Query 030222
Match_columns 181
No_of_seqs 204 out of 1928
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 10:25:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030222.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030222hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0910 Thioredoxin-like prote 100.0 2.3E-31 5.1E-36 192.2 12.4 105 77-181 44-148 (150)
2 cd03065 PDI_b_Calsequestrin_N 99.9 1.1E-25 2.5E-30 159.7 12.3 104 77-181 10-119 (120)
3 cd03006 PDI_a_EFP1_N PDIa fami 99.9 8.2E-25 1.8E-29 154.0 11.8 102 76-177 9-113 (113)
4 PF00085 Thioredoxin: Thioredo 99.9 3.2E-24 6.8E-29 147.4 14.3 102 79-180 2-103 (103)
5 cd02954 DIM1 Dim1 family; Dim1 99.9 2.1E-25 4.6E-30 156.4 8.5 87 84-170 3-90 (114)
6 PHA02278 thioredoxin-like prot 99.9 1.9E-24 4E-29 149.9 12.2 93 83-176 4-100 (103)
7 cd03004 PDI_a_ERdj5_C PDIa fam 99.9 1.6E-24 3.5E-29 150.0 10.9 99 79-177 4-104 (104)
8 cd02956 ybbN ybbN protein fami 99.9 7E-24 1.5E-28 144.7 12.3 94 85-178 2-96 (96)
9 cd03003 PDI_a_ERdj5_N PDIa fam 99.9 3.4E-24 7.3E-29 147.8 10.8 98 78-176 3-100 (101)
10 PRK09381 trxA thioredoxin; Pro 99.9 1.3E-23 2.7E-28 146.8 13.6 105 77-181 4-108 (109)
11 COG3118 Thioredoxin domain-con 99.9 3.1E-24 6.6E-29 170.4 11.0 104 78-181 25-130 (304)
12 cd02963 TRX_DnaJ TRX domain, D 99.9 6.9E-24 1.5E-28 149.0 11.5 102 79-180 7-111 (111)
13 cd02985 TRX_CDSP32 TRX family, 99.9 2.1E-23 4.6E-28 144.6 12.7 96 82-179 2-101 (103)
14 KOG0907 Thioredoxin [Posttrans 99.9 2.4E-23 5.2E-28 144.7 11.2 88 91-180 18-105 (106)
15 cd02965 HyaE HyaE family; HyaE 99.9 3.8E-23 8.2E-28 144.2 12.0 95 80-175 14-110 (111)
16 PRK10996 thioredoxin 2; Provis 99.9 5.9E-23 1.3E-27 149.8 13.7 103 78-181 37-139 (139)
17 cd02948 TRX_NDPK TRX domain, T 99.9 5.6E-23 1.2E-27 142.3 12.7 98 80-180 4-102 (102)
18 PLN00410 U5 snRNP protein, DIM 99.9 9.3E-23 2E-27 148.2 12.1 99 82-180 10-119 (142)
19 cd03002 PDI_a_MPD1_like PDI fa 99.9 6.8E-23 1.5E-27 142.7 11.0 100 79-178 3-109 (109)
20 cd02999 PDI_a_ERp44_like PDIa 99.9 7.7E-23 1.7E-27 141.2 10.3 84 92-177 16-100 (100)
21 cd02996 PDI_a_ERp44 PDIa famil 99.9 1.2E-22 2.5E-27 141.8 11.0 99 78-177 3-108 (108)
22 cd02994 PDI_a_TMX PDIa family, 99.9 3.2E-22 6.9E-27 137.8 12.0 98 78-179 3-101 (101)
23 TIGR01068 thioredoxin thioredo 99.9 5.3E-22 1.1E-26 135.6 12.7 100 82-181 2-101 (101)
24 cd03005 PDI_a_ERp46 PDIa famil 99.9 3.6E-22 7.9E-27 137.2 11.6 97 79-177 3-102 (102)
25 PTZ00443 Thioredoxin domain-co 99.9 4.9E-22 1.1E-26 155.1 12.7 105 76-180 30-138 (224)
26 cd03001 PDI_a_P5 PDIa family, 99.9 8.3E-22 1.8E-26 135.7 11.6 99 79-177 3-102 (103)
27 cd02950 TxlA TRX-like protein 99.9 7.2E-22 1.6E-26 144.6 11.6 98 83-181 10-110 (142)
28 TIGR01126 pdi_dom protein disu 99.9 9.2E-22 2E-26 134.9 11.2 100 81-181 1-102 (102)
29 cd02949 TRX_NTR TRX domain, no 99.9 2.9E-21 6.2E-26 132.3 12.5 93 86-178 5-97 (97)
30 cd02957 Phd_like Phosducin (Ph 99.9 1.4E-21 3.1E-26 137.6 10.4 90 77-168 5-96 (113)
31 cd02997 PDI_a_PDIR PDIa family 99.9 3.7E-21 8.1E-26 132.5 11.9 98 79-177 3-104 (104)
32 cd02984 TRX_PICOT TRX domain, 99.9 6.3E-21 1.4E-25 130.1 11.8 94 83-177 2-96 (97)
33 cd02986 DLP Dim1 family, Dim1- 99.9 8.1E-21 1.7E-25 132.5 12.3 96 84-179 3-109 (114)
34 cd02962 TMX2 TMX2 family; comp 99.9 1.2E-20 2.7E-25 139.2 12.8 91 76-166 28-126 (152)
35 cd02989 Phd_like_TxnDC9 Phosdu 99.9 1.4E-20 3.1E-25 132.6 12.0 88 79-168 7-95 (113)
36 cd02953 DsbDgamma DsbD gamma f 99.8 4.9E-21 1.1E-25 132.6 9.0 94 84-178 2-104 (104)
37 cd02995 PDI_a_PDI_a'_C PDIa fa 99.8 1.1E-20 2.3E-25 130.2 10.5 99 78-177 2-104 (104)
38 cd03000 PDI_a_TMX3 PDIa family 99.8 1.7E-20 3.6E-25 130.0 11.4 95 83-180 6-103 (104)
39 cd02998 PDI_a_ERp38 PDIa famil 99.8 1.1E-20 2.3E-25 130.3 10.3 99 79-177 3-105 (105)
40 cd02975 PfPDO_like_N Pyrococcu 99.8 4.2E-20 9E-25 130.2 10.5 89 92-181 20-110 (113)
41 cd02987 Phd_like_Phd Phosducin 99.8 9.3E-20 2E-24 137.7 12.9 103 75-179 61-173 (175)
42 cd02993 PDI_a_APS_reductase PD 99.8 6.3E-20 1.4E-24 128.3 10.8 100 78-177 3-109 (109)
43 PTZ00051 thioredoxin; Provisio 99.8 2E-19 4.3E-24 123.0 12.0 90 82-174 7-96 (98)
44 cd02961 PDI_a_family Protein D 99.8 1E-19 2.2E-24 123.6 9.3 97 80-177 2-101 (101)
45 cd02951 SoxW SoxW family; SoxW 99.8 2.4E-19 5.2E-24 128.1 11.2 92 90-181 9-119 (125)
46 KOG0908 Thioredoxin-like prote 99.8 9.8E-20 2.1E-24 141.0 9.5 100 80-181 6-106 (288)
47 KOG0190 Protein disulfide isom 99.8 1.6E-19 3.4E-24 153.3 10.0 107 73-180 22-131 (493)
48 TIGR01295 PedC_BrcD bacterioci 99.8 1E-18 2.3E-23 124.7 12.0 96 80-178 10-121 (122)
49 cd02947 TRX_family TRX family; 99.8 1.8E-18 3.8E-23 115.3 12.0 92 85-178 2-93 (93)
50 cd02988 Phd_like_VIAF Phosduci 99.8 2.1E-18 4.6E-23 132.0 11.9 102 74-179 80-190 (192)
51 TIGR00411 redox_disulf_1 small 99.8 3.7E-18 7.9E-23 112.8 11.2 81 97-181 2-82 (82)
52 cd02992 PDI_a_QSOX PDIa family 99.8 2.5E-18 5.5E-23 121.3 10.3 84 78-161 3-91 (114)
53 TIGR00424 APS_reduc 5'-adenyly 99.8 3.5E-18 7.5E-23 145.5 12.1 106 75-180 350-462 (463)
54 TIGR01130 ER_PDI_fam protein d 99.8 4.2E-18 9.2E-23 145.2 12.5 103 78-181 3-109 (462)
55 PTZ00102 disulphide isomerase; 99.8 7E-18 1.5E-22 145.0 13.1 105 76-180 357-464 (477)
56 PTZ00102 disulphide isomerase; 99.8 9.9E-18 2.1E-22 144.0 12.9 104 76-181 32-138 (477)
57 PLN02309 5'-adenylylsulfate re 99.8 9.4E-18 2E-22 142.8 12.4 107 74-180 343-456 (457)
58 cd03007 PDI_a_ERp29_N PDIa fam 99.8 5.7E-18 1.2E-22 119.2 8.9 98 78-180 3-115 (116)
59 cd02982 PDI_b'_family Protein 99.8 6.7E-18 1.5E-22 116.3 8.9 88 94-181 12-103 (103)
60 cd02952 TRP14_like Human TRX-r 99.7 2.1E-17 4.7E-22 117.0 9.3 96 81-177 7-118 (119)
61 PTZ00062 glutaredoxin; Provisi 99.7 5.7E-17 1.2E-21 124.8 10.9 89 82-180 5-93 (204)
62 PRK15412 thiol:disulfide inter 99.7 1.8E-16 4E-21 120.7 12.2 87 92-181 66-176 (185)
63 PRK14018 trifunctional thiored 99.7 1.3E-16 2.9E-21 137.5 11.6 99 81-179 43-171 (521)
64 TIGR02738 TrbB type-F conjugat 99.7 2.6E-16 5.6E-21 116.4 11.4 86 94-181 50-153 (153)
65 TIGR02187 GlrX_arch Glutaredox 99.7 1.4E-16 3E-21 124.2 10.4 87 94-180 19-110 (215)
66 TIGR00385 dsbE periplasmic pro 99.7 6.1E-16 1.3E-20 116.6 12.1 87 92-181 61-171 (173)
67 cd02959 ERp19 Endoplasmic reti 99.7 8.1E-17 1.7E-21 114.1 6.1 79 88-166 13-95 (117)
68 PF13098 Thioredoxin_2: Thiore 99.7 9.9E-17 2.2E-21 112.1 6.5 86 92-177 3-112 (112)
69 TIGR01130 ER_PDI_fam protein d 99.7 4.9E-16 1.1E-20 132.5 12.0 103 76-180 346-453 (462)
70 cd03010 TlpA_like_DsbE TlpA-li 99.7 6.9E-16 1.5E-20 110.3 9.9 79 93-173 24-126 (127)
71 TIGR00412 redox_disulf_2 small 99.7 6.7E-16 1.5E-20 101.2 8.9 73 98-177 2-75 (76)
72 TIGR02187 GlrX_arch Glutaredox 99.7 1.4E-15 3E-20 118.5 11.7 96 80-179 119-214 (215)
73 PHA02125 thioredoxin-like prot 99.7 1.1E-15 2.5E-20 99.8 9.3 71 98-177 2-73 (75)
74 KOG0190 Protein disulfide isom 99.6 2.7E-16 5.9E-21 133.7 7.2 102 76-179 366-471 (493)
75 KOG0912 Thiol-disulfide isomer 99.6 4.4E-16 9.6E-21 123.9 7.9 98 83-181 3-106 (375)
76 TIGR02740 TraF-like TraF-like 99.6 3.5E-15 7.6E-20 120.0 12.7 86 93-180 165-263 (271)
77 PRK11509 hydrogenase-1 operon 99.6 9.2E-15 2E-19 104.9 12.4 100 81-181 22-124 (132)
78 cd02955 SSP411 TRX domain, SSP 99.6 4.7E-15 1E-19 105.9 10.6 91 89-179 10-117 (124)
79 PRK00293 dipZ thiol:disulfide 99.6 2.6E-15 5.6E-20 131.9 11.0 98 82-180 459-569 (571)
80 cd03008 TryX_like_RdCVF Trypar 99.6 4.7E-15 1E-19 108.7 9.7 72 92-163 23-128 (146)
81 PLN02919 haloacid dehalogenase 99.6 8.1E-15 1.7E-19 136.4 12.0 89 93-181 419-536 (1057)
82 PRK03147 thiol-disulfide oxido 99.6 1.9E-14 4.2E-19 107.8 12.0 89 92-180 59-171 (173)
83 KOG4277 Uncharacterized conser 99.6 2.1E-15 4.5E-20 120.2 6.8 86 93-179 42-130 (468)
84 KOG0191 Thioredoxin/protein di 99.6 6.7E-15 1.5E-19 123.8 9.7 100 81-180 34-133 (383)
85 PRK13728 conjugal transfer pro 99.6 2E-14 4.4E-19 108.5 10.9 82 98-181 73-171 (181)
86 cd03009 TryX_like_TryX_NRX Try 99.6 1.4E-14 3.1E-19 104.0 9.3 71 93-163 17-115 (131)
87 cd02964 TryX_like_family Trypa 99.6 1.4E-14 3E-19 104.4 9.1 71 93-163 16-115 (132)
88 PF13905 Thioredoxin_8: Thiore 99.6 1.6E-14 3.4E-19 98.0 8.8 67 94-160 1-95 (95)
89 PF08534 Redoxin: Redoxin; In 99.6 2.9E-14 6.4E-19 104.1 10.3 78 92-169 26-136 (146)
90 PLN02399 phospholipid hydroper 99.6 6.9E-14 1.5E-18 110.1 12.6 90 92-181 97-234 (236)
91 cd03011 TlpA_like_ScsD_MtbDsbE 99.6 4.8E-14 1E-18 99.9 10.2 84 92-177 18-122 (123)
92 cd02973 TRX_GRX_like Thioredox 99.5 6.5E-14 1.4E-18 89.2 8.6 63 97-162 2-64 (67)
93 PTZ00056 glutathione peroxidas 99.5 6.5E-14 1.4E-18 107.9 9.7 89 93-181 38-178 (199)
94 cd03026 AhpF_NTD_C TRX-GRX-lik 99.5 1.5E-13 3.3E-18 92.7 10.3 76 94-174 12-87 (89)
95 cd02958 UAS UAS family; UAS is 99.5 2.3E-13 5E-18 95.7 10.6 92 89-180 12-110 (114)
96 cd03012 TlpA_like_DipZ_like Tl 99.5 1.8E-13 3.8E-18 97.8 9.8 75 93-167 22-125 (126)
97 cd02966 TlpA_like_family TlpA- 99.5 2.9E-13 6.2E-18 93.3 9.5 74 93-166 18-116 (116)
98 cd02967 mauD Methylamine utili 99.5 2.5E-13 5.4E-18 95.0 8.8 71 93-163 20-111 (114)
99 KOG0191 Thioredoxin/protein di 99.5 2.1E-13 4.6E-18 114.7 9.3 104 77-180 145-251 (383)
100 TIGR01626 ytfJ_HI0045 conserve 99.5 4.1E-13 8.9E-18 101.8 9.6 82 93-177 58-176 (184)
101 TIGR02540 gpx7 putative glutat 99.4 1E-12 2.2E-17 97.0 10.1 90 92-181 20-153 (153)
102 TIGR02661 MauD methylamine deh 99.4 1.7E-12 3.8E-17 99.2 10.7 84 93-179 73-177 (189)
103 PLN02412 probable glutathione 99.4 1.4E-12 3E-17 97.9 10.0 89 93-181 28-164 (167)
104 KOG1731 FAD-dependent sulfhydr 99.4 1.3E-13 2.8E-18 117.8 3.4 105 76-180 39-152 (606)
105 cd00340 GSH_Peroxidase Glutath 99.4 2.5E-12 5.4E-17 94.9 8.8 83 93-176 21-151 (152)
106 cd02969 PRX_like1 Peroxiredoxi 99.3 1.3E-11 2.9E-16 92.5 10.9 89 93-181 24-152 (171)
107 COG0526 TrxA Thiol-disulfide i 99.3 6.4E-12 1.4E-16 86.0 8.3 86 94-179 32-122 (127)
108 smart00594 UAS UAS domain. 99.3 1.5E-11 3.3E-16 87.6 10.3 89 90-178 23-122 (122)
109 cd02960 AGR Anterior Gradient 99.3 5.2E-12 1.1E-16 90.6 6.9 80 88-169 17-101 (130)
110 PTZ00256 glutathione peroxidas 99.3 1.7E-11 3.6E-16 93.3 9.1 89 93-181 39-181 (183)
111 COG4232 Thiol:disulfide interc 99.3 1.2E-11 2.7E-16 106.6 8.2 95 85-180 464-567 (569)
112 cd03017 PRX_BCP Peroxiredoxin 99.3 5.7E-11 1.2E-15 85.8 10.0 86 93-178 22-140 (140)
113 PF13899 Thioredoxin_7: Thiore 99.2 3.7E-11 8.1E-16 79.6 6.4 68 88-156 11-81 (82)
114 PRK00522 tpx lipid hydroperoxi 99.2 2.5E-10 5.4E-15 85.6 10.7 85 93-178 43-166 (167)
115 TIGR02196 GlrX_YruB Glutaredox 99.2 2.7E-10 6E-15 72.8 8.3 69 98-178 2-74 (74)
116 PF00578 AhpC-TSA: AhpC/TSA fa 99.2 1.9E-10 4E-15 81.3 8.1 70 93-162 24-123 (124)
117 KOG2501 Thioredoxin, nucleored 99.1 1.4E-10 3E-15 85.1 7.1 70 93-162 32-130 (157)
118 cd03015 PRX_Typ2cys Peroxiredo 99.1 8.3E-10 1.8E-14 83.1 10.9 88 93-180 28-156 (173)
119 cd03014 PRX_Atyp2cys Peroxired 99.1 3.7E-10 8.1E-15 82.1 8.7 84 93-177 25-141 (143)
120 PF13728 TraF: F plasmid trans 99.1 1E-09 2.2E-14 85.6 11.4 83 93-177 119-214 (215)
121 PRK09437 bcp thioredoxin-depen 99.1 1.2E-09 2.6E-14 80.4 10.8 86 93-178 29-150 (154)
122 TIGR03137 AhpC peroxiredoxin. 99.1 1.2E-09 2.7E-14 83.3 10.8 87 93-179 30-154 (187)
123 TIGR02200 GlrX_actino Glutared 99.1 9.4E-10 2E-14 71.3 8.2 70 98-178 2-76 (77)
124 PF02114 Phosducin: Phosducin; 99.1 8.4E-10 1.8E-14 88.4 9.3 103 75-179 124-236 (265)
125 PF13192 Thioredoxin_3: Thiore 99.1 2.1E-09 4.5E-14 70.2 9.1 73 99-178 3-76 (76)
126 COG2143 Thioredoxin-related pr 99.0 3.1E-09 6.6E-14 77.5 10.0 90 90-179 38-147 (182)
127 cd03018 PRX_AhpE_like Peroxire 99.0 2.7E-09 5.8E-14 77.9 10.0 86 93-178 26-148 (149)
128 KOG1672 ATP binding protein [P 99.0 8.8E-10 1.9E-14 82.9 7.2 88 79-168 70-157 (211)
129 PRK13190 putative peroxiredoxi 99.0 4.9E-09 1.1E-13 81.0 11.7 88 93-180 26-153 (202)
130 cd02971 PRX_family Peroxiredox 99.0 2.1E-09 4.5E-14 77.5 8.7 77 93-169 21-131 (140)
131 cd02970 PRX_like2 Peroxiredoxi 99.0 3.9E-09 8.4E-14 76.7 10.1 72 95-166 25-148 (149)
132 PRK10606 btuE putative glutath 99.0 1.5E-09 3.3E-14 82.5 7.9 90 91-181 22-181 (183)
133 cd01659 TRX_superfamily Thiore 99.0 2.2E-09 4.8E-14 65.4 7.3 60 98-158 1-63 (69)
134 PRK10382 alkyl hydroperoxide r 99.0 7.8E-09 1.7E-13 78.9 11.4 88 93-180 30-155 (187)
135 cd02968 SCO SCO (an acronym fo 99.0 3E-09 6.5E-14 76.9 7.9 44 93-136 21-69 (142)
136 TIGR02180 GRX_euk Glutaredoxin 99.0 4.3E-09 9.2E-14 69.4 7.9 61 98-162 1-66 (84)
137 PF14595 Thioredoxin_9: Thiore 99.0 1.4E-09 2.9E-14 78.3 5.6 96 81-179 28-127 (129)
138 TIGR02739 TraF type-F conjugat 98.9 1.1E-08 2.5E-13 81.3 11.0 86 93-180 149-247 (256)
139 PF03190 Thioredox_DsbH: Prote 98.9 5.9E-09 1.3E-13 77.4 8.8 82 83-165 27-120 (163)
140 PRK15000 peroxidase; Provision 98.9 1.3E-08 2.8E-13 78.6 10.7 87 93-179 33-160 (200)
141 KOG0914 Thioredoxin-like prote 98.9 2.5E-09 5.5E-14 81.9 5.9 84 82-165 131-222 (265)
142 cd03016 PRX_1cys Peroxiredoxin 98.9 1.8E-08 4E-13 77.8 10.7 85 96-180 28-153 (203)
143 PRK13703 conjugal pilus assemb 98.9 2.6E-08 5.6E-13 78.9 11.2 85 94-180 143-240 (248)
144 PF06110 DUF953: Eukaryotic pr 98.8 2E-08 4.4E-13 71.0 8.3 75 85-159 7-100 (119)
145 PTZ00137 2-Cys peroxiredoxin; 98.8 5.9E-08 1.3E-12 77.6 11.8 88 93-180 97-224 (261)
146 PRK10877 protein disulfide iso 98.8 3.1E-08 6.8E-13 78.1 9.3 81 93-180 106-230 (232)
147 PRK13189 peroxiredoxin; Provis 98.8 6.5E-08 1.4E-12 75.8 11.0 88 93-180 34-162 (222)
148 PRK11200 grxA glutaredoxin 1; 98.8 5.6E-08 1.2E-12 64.7 8.9 75 97-180 2-82 (85)
149 PRK13599 putative peroxiredoxi 98.8 9.6E-08 2.1E-12 74.5 11.3 88 93-180 27-155 (215)
150 cd02991 UAS_ETEA UAS family, E 98.8 8.1E-08 1.7E-12 67.8 9.8 90 90-180 13-112 (116)
151 KOG0913 Thiol-disulfide isomer 98.8 1.7E-09 3.8E-14 83.6 1.1 99 77-179 25-124 (248)
152 TIGR03143 AhpF_homolog putativ 98.8 7.2E-08 1.6E-12 84.9 10.7 79 94-177 475-554 (555)
153 PRK13191 putative peroxiredoxi 98.7 1.2E-07 2.7E-12 73.9 10.5 88 93-180 32-160 (215)
154 cd03020 DsbA_DsbC_DsbG DsbA fa 98.7 7.6E-08 1.6E-12 73.9 7.5 77 93-177 76-197 (197)
155 PTZ00253 tryparedoxin peroxida 98.7 1E-07 2.2E-12 73.4 7.5 87 93-179 35-162 (199)
156 PF13848 Thioredoxin_6: Thiore 98.6 8.7E-07 1.9E-11 66.5 11.8 104 76-179 77-184 (184)
157 cd03023 DsbA_Com1_like DsbA fa 98.6 2.3E-07 5.1E-12 67.4 8.4 80 93-178 4-154 (154)
158 KOG3414 Component of the U4/U6 98.6 8E-07 1.7E-11 62.6 10.5 88 91-178 20-117 (142)
159 PRK11657 dsbG disulfide isomer 98.6 2.4E-07 5.3E-12 73.8 8.8 84 93-179 116-250 (251)
160 KOG0911 Glutaredoxin-related p 98.6 2.2E-08 4.8E-13 77.1 2.6 80 93-173 16-95 (227)
161 PF02966 DIM1: Mitosis protein 98.6 2E-06 4.3E-11 61.2 12.2 93 86-179 11-115 (133)
162 PRK15317 alkyl hydroperoxide r 98.6 4.5E-07 9.7E-12 79.3 10.7 95 80-179 102-196 (517)
163 KOG3425 Uncharacterized conser 98.6 2.1E-07 4.5E-12 65.0 6.8 74 84-157 13-104 (128)
164 PF07449 HyaE: Hydrogenase-1 e 98.6 3.5E-07 7.6E-12 63.4 7.9 92 79-172 12-106 (107)
165 cd02976 NrdH NrdH-redoxin (Nrd 98.6 3.6E-07 7.7E-12 58.0 7.5 67 98-176 2-72 (73)
166 TIGR02183 GRXA Glutaredoxin, G 98.6 5.2E-07 1.1E-11 60.2 8.1 73 98-179 2-80 (86)
167 PF13462 Thioredoxin_4: Thiore 98.5 7.7E-07 1.7E-11 65.5 9.2 82 93-179 11-162 (162)
168 cd03019 DsbA_DsbA DsbA family, 98.5 6.6E-07 1.4E-11 66.9 7.6 38 93-130 14-51 (178)
169 COG1225 Bcp Peroxiredoxin [Pos 98.5 2.4E-06 5.3E-11 63.1 9.8 94 87-180 23-155 (157)
170 cd03419 GRX_GRXh_1_2_like Glut 98.4 1.7E-06 3.7E-11 56.6 7.8 58 98-161 2-64 (82)
171 TIGR02190 GlrX-dom Glutaredoxi 98.4 2.3E-06 5E-11 56.1 8.2 70 94-177 6-78 (79)
172 PF00462 Glutaredoxin: Glutare 98.4 1.5E-06 3.3E-11 53.8 6.6 56 98-161 1-60 (60)
173 PF01216 Calsequestrin: Calseq 98.4 5.2E-06 1.1E-10 68.0 11.4 103 76-181 34-144 (383)
174 TIGR03140 AhpF alkyl hydropero 98.4 3E-06 6.6E-11 74.1 10.7 95 80-179 103-197 (515)
175 PRK10954 periplasmic protein d 98.4 2E-06 4.3E-11 66.6 8.0 39 94-132 37-78 (207)
176 cd03072 PDI_b'_ERp44 PDIb' fam 98.3 6.5E-06 1.4E-10 57.6 8.7 99 80-181 3-108 (111)
177 PF05768 DUF836: Glutaredoxin- 98.2 3.4E-06 7.4E-11 55.6 5.7 78 98-178 2-81 (81)
178 cd02983 P5_C P5 family, C-term 98.2 7E-06 1.5E-10 59.1 7.7 72 110-181 40-115 (130)
179 cd02066 GRX_family Glutaredoxi 98.2 8.9E-06 1.9E-10 51.1 6.9 57 98-162 2-62 (72)
180 cd03029 GRX_hybridPRX5 Glutare 98.2 2E-05 4.3E-10 50.5 8.3 66 98-177 3-71 (72)
181 PF11009 DUF2847: Protein of u 98.2 2.6E-05 5.7E-10 53.8 9.2 92 82-173 6-104 (105)
182 TIGR02194 GlrX_NrdH Glutaredox 98.2 1.2E-05 2.5E-10 51.7 7.1 67 98-175 1-70 (72)
183 cd03073 PDI_b'_ERp72_ERp57 PDI 98.2 1.6E-05 3.5E-10 55.6 8.3 75 107-181 31-111 (111)
184 TIGR02181 GRX_bact Glutaredoxi 98.1 1.8E-05 4E-10 51.5 7.4 57 98-162 1-61 (79)
185 PHA03050 glutaredoxin; Provisi 98.1 1.9E-05 4.1E-10 55.0 7.6 60 98-162 15-81 (108)
186 cd03418 GRX_GRXb_1_3_like Glut 98.1 2.8E-05 6E-10 50.0 7.6 57 98-162 2-63 (75)
187 TIGR02189 GlrX-like_plant Glut 98.1 1.3E-05 2.9E-10 54.9 6.2 57 98-162 10-73 (99)
188 PRK10329 glutaredoxin-like pro 98.1 5.3E-05 1.2E-09 50.0 8.8 69 98-178 3-74 (81)
189 cd03027 GRX_DEP Glutaredoxin ( 98.0 3.2E-05 7E-10 49.7 7.1 57 98-162 3-63 (73)
190 TIGR03143 AhpF_homolog putativ 97.9 7.9E-05 1.7E-09 65.9 10.3 95 86-181 357-454 (555)
191 cd02972 DsbA_family DsbA famil 97.9 3.7E-05 8E-10 51.0 6.4 59 98-156 1-91 (98)
192 cd02981 PDI_b_family Protein D 97.9 0.00014 3.1E-09 48.9 9.1 83 90-179 13-96 (97)
193 KOG3171 Conserved phosducin-li 97.9 1.9E-05 4.2E-10 60.7 5.1 103 75-179 137-249 (273)
194 TIGR00365 monothiol glutaredox 97.9 0.00018 3.9E-09 49.1 9.0 61 94-162 11-79 (97)
195 cd03028 GRX_PICOT_like Glutare 97.9 0.00019 4.1E-09 48.2 8.8 61 94-162 7-75 (90)
196 KOG2603 Oligosaccharyltransfer 97.8 0.00018 3.9E-09 58.3 9.3 105 75-180 39-165 (331)
197 PRK10638 glutaredoxin 3; Provi 97.7 0.00018 4E-09 47.3 6.9 57 98-162 4-64 (83)
198 COG0695 GrxC Glutaredoxin and 97.7 0.00031 6.8E-09 46.2 7.9 55 98-160 3-63 (80)
199 KOG3170 Conserved phosducin-li 97.6 0.00011 2.4E-09 56.0 5.3 101 74-178 89-198 (240)
200 PRK10824 glutaredoxin-4; Provi 97.6 0.00023 5.1E-09 50.0 6.3 61 94-162 14-82 (115)
201 COG1331 Highly conserved prote 97.6 0.00019 4.1E-09 63.7 7.1 86 77-163 27-124 (667)
202 cd03013 PRX5_like Peroxiredoxi 97.6 0.00081 1.8E-08 49.7 9.4 75 94-168 29-141 (155)
203 PF00837 T4_deiodinase: Iodoth 97.5 0.00066 1.4E-08 53.4 8.7 109 69-180 76-236 (237)
204 KOG1752 Glutaredoxin and relat 97.5 0.00052 1.1E-08 47.4 6.8 59 98-162 16-79 (104)
205 PF07912 ERp29_N: ERp29, N-ter 97.5 0.0043 9.4E-08 43.9 11.4 99 79-180 7-118 (126)
206 PF13743 Thioredoxin_5: Thiore 97.3 0.00054 1.2E-08 51.7 5.3 31 100-130 2-32 (176)
207 COG1651 DsbG Protein-disulfide 97.2 0.0019 4.1E-08 50.9 7.9 37 139-180 206-242 (244)
208 PF01323 DSBA: DSBA-like thior 97.2 0.0029 6.2E-08 47.7 8.5 35 140-178 159-193 (193)
209 PF13848 Thioredoxin_6: Thiore 97.1 0.0045 9.7E-08 46.2 8.6 65 112-180 8-74 (184)
210 cd03067 PDI_b_PDIR_N PDIb fami 97.1 0.0053 1.1E-07 41.9 7.8 98 80-179 6-110 (112)
211 PRK12759 bifunctional gluaredo 97.1 0.0019 4.2E-08 55.1 7.0 57 98-162 4-72 (410)
212 PTZ00062 glutaredoxin; Provisi 97.0 0.0033 7.2E-08 48.6 7.5 61 94-162 112-180 (204)
213 KOG2640 Thioredoxin [Function 96.8 0.00045 9.7E-09 56.0 1.0 88 93-181 75-162 (319)
214 COG0386 BtuE Glutathione perox 96.4 0.035 7.5E-07 40.9 8.5 92 89-181 20-160 (162)
215 cd03031 GRX_GRX_like Glutaredo 96.3 0.041 8.8E-07 40.4 8.6 57 98-162 2-72 (147)
216 cd02974 AhpF_NTD_N Alkyl hydro 96.1 0.13 2.7E-06 34.9 9.6 75 94-181 18-94 (94)
217 COG0450 AhpC Peroxiredoxin [Po 96.0 0.082 1.8E-06 40.4 9.1 87 94-180 33-160 (194)
218 cd03066 PDI_b_Calsequestrin_mi 95.9 0.12 2.5E-06 35.2 8.9 91 82-179 7-99 (102)
219 cd03040 GST_N_mPGES2 GST_N fam 95.8 0.08 1.7E-06 33.7 7.2 73 98-181 2-76 (77)
220 cd03041 GST_N_2GST_N GST_N fam 95.6 0.16 3.4E-06 32.6 8.0 72 98-179 2-75 (77)
221 cd02978 KaiB_like KaiB-like fa 95.4 0.062 1.3E-06 34.5 5.5 59 97-155 3-62 (72)
222 PRK15317 alkyl hydroperoxide r 95.4 0.13 2.9E-06 45.1 9.4 82 87-180 11-93 (517)
223 cd03037 GST_N_GRX2 GST_N famil 95.4 0.12 2.6E-06 32.4 6.8 68 100-178 3-70 (71)
224 COG3019 Predicted metal-bindin 95.3 0.2 4.4E-06 36.2 8.2 73 96-179 26-102 (149)
225 COG1999 Uncharacterized protei 95.2 0.29 6.2E-06 38.0 9.7 89 93-181 66-204 (207)
226 cd03060 GST_N_Omega_like GST_N 95.2 0.16 3.4E-06 31.9 7.0 58 99-161 2-60 (71)
227 KOG0855 Alkyl hydroperoxide re 95.0 0.16 3.5E-06 38.0 7.3 81 66-150 63-169 (211)
228 cd03069 PDI_b_ERp57 PDIb famil 95.0 0.24 5.3E-06 33.8 7.9 88 84-180 9-103 (104)
229 TIGR03140 AhpF alkyl hydropero 94.9 0.23 5E-06 43.6 9.4 82 88-180 12-94 (515)
230 TIGR02654 circ_KaiB circadian 94.7 0.17 3.7E-06 33.7 6.1 74 95-169 3-77 (87)
231 cd02990 UAS_FAF1 UAS family, F 94.5 1.3 2.8E-05 32.1 11.4 90 91-180 18-132 (136)
232 PF09673 TrbC_Ftype: Type-F co 94.4 0.14 2.9E-06 35.9 5.5 60 111-172 36-107 (113)
233 TIGR02742 TrbC_Ftype type-F co 94.4 0.14 3E-06 36.8 5.6 47 132-178 55-112 (130)
234 PRK09301 circadian clock prote 94.2 0.33 7.2E-06 33.3 6.8 75 94-169 5-80 (103)
235 KOG2507 Ubiquitin regulatory p 93.9 0.56 1.2E-05 40.0 8.9 87 94-180 18-110 (506)
236 COG4545 Glutaredoxin-related p 93.8 0.17 3.7E-06 32.7 4.5 57 99-162 5-77 (85)
237 KOG1651 Glutathione peroxidase 93.7 0.38 8.1E-06 35.9 6.8 97 85-181 25-169 (171)
238 PF13417 GST_N_3: Glutathione 93.7 1.1 2.4E-05 28.3 8.9 69 100-180 1-70 (75)
239 PHA03075 glutaredoxin-like pro 93.7 0.79 1.7E-05 32.1 8.0 30 95-124 2-31 (123)
240 cd03074 PDI_b'_Calsequestrin_C 93.4 1.9 4E-05 30.0 9.8 88 94-181 20-120 (120)
241 COG2761 FrnE Predicted dithiol 93.0 0.18 3.9E-06 39.5 4.5 39 139-181 175-213 (225)
242 cd00570 GST_N_family Glutathio 92.8 0.24 5.2E-06 29.8 4.1 57 99-161 2-60 (71)
243 COG3531 Predicted protein-disu 92.7 0.2 4.4E-06 38.4 4.3 43 139-181 165-209 (212)
244 KOG2792 Putative cytochrome C 92.7 0.65 1.4E-05 37.2 7.2 88 93-180 138-274 (280)
245 PF09822 ABC_transp_aux: ABC-t 92.6 3.2 7E-05 33.1 11.4 74 76-150 7-90 (271)
246 PF13778 DUF4174: Domain of un 92.1 2.4 5.2E-05 29.7 9.0 76 105-180 21-111 (118)
247 cd03051 GST_N_GTT2_like GST_N 91.9 0.31 6.6E-06 30.3 3.9 57 99-160 2-62 (74)
248 cd02977 ArsC_family Arsenate R 91.8 0.18 3.8E-06 34.5 2.8 75 99-179 2-85 (105)
249 cd03036 ArsC_like Arsenate Red 91.6 0.1 2.2E-06 36.2 1.5 55 99-159 2-61 (111)
250 cd03059 GST_N_SspA GST_N famil 91.5 1.1 2.4E-05 27.8 6.1 69 99-179 2-71 (73)
251 COG3634 AhpF Alkyl hydroperoxi 91.4 0.72 1.6E-05 38.9 6.3 87 87-178 109-195 (520)
252 cd03024 DsbA_FrnE DsbA family, 91.1 0.24 5.3E-06 37.4 3.3 38 137-178 164-201 (201)
253 PF02630 SCO1-SenC: SCO1/SenC; 90.0 0.79 1.7E-05 34.4 5.1 45 93-137 51-99 (174)
254 TIGR01617 arsC_related transcr 89.9 0.64 1.4E-05 32.4 4.3 34 99-138 2-35 (117)
255 cd03045 GST_N_Delta_Epsilon GS 89.7 0.63 1.4E-05 29.1 3.8 56 99-160 2-61 (74)
256 PRK01655 spxA transcriptional 89.3 0.68 1.5E-05 33.2 4.1 34 98-137 2-35 (131)
257 KOG0852 Alkyl hydroperoxide re 89.1 2.7 5.9E-05 31.8 7.2 78 85-162 22-138 (196)
258 cd03068 PDI_b_ERp72 PDIb famil 88.4 6.2 0.00014 27.0 9.5 90 83-179 8-106 (107)
259 PF07689 KaiB: KaiB domain; I 87.9 0.16 3.5E-06 33.5 0.1 52 103-154 5-57 (82)
260 cd03035 ArsC_Yffb Arsenate Red 87.9 0.64 1.4E-05 32.0 3.1 34 98-137 1-34 (105)
261 PF04592 SelP_N: Selenoprotein 87.4 6.2 0.00013 31.2 8.6 59 75-135 9-71 (238)
262 cd03022 DsbA_HCCA_Iso DsbA fam 87.2 0.76 1.6E-05 34.3 3.4 35 138-177 157-191 (192)
263 PF04134 DUF393: Protein of un 86.9 0.88 1.9E-05 31.3 3.4 57 101-159 2-61 (114)
264 cd03025 DsbA_FrnE_like DsbA fa 86.7 0.97 2.1E-05 33.8 3.8 28 98-125 3-30 (193)
265 PF06053 DUF929: Domain of unk 86.5 2.5 5.5E-05 33.7 6.1 57 91-155 55-112 (249)
266 cd03055 GST_N_Omega GST_N fami 85.4 4.5 9.7E-05 26.5 6.1 59 98-161 19-78 (89)
267 PRK12559 transcriptional regul 84.3 1.4 2.9E-05 31.6 3.4 22 98-119 2-23 (131)
268 cd03052 GST_N_GDAP1 GST_N fami 84.1 8.2 0.00018 24.2 7.8 57 99-161 2-62 (73)
269 PRK13730 conjugal transfer pil 84.1 2.5 5.5E-05 32.7 4.8 37 136-173 150-186 (212)
270 cd03032 ArsC_Spx Arsenate Redu 84.0 2.2 4.8E-05 29.6 4.3 34 98-137 2-35 (115)
271 PRK00366 ispG 4-hydroxy-3-meth 82.9 2.3 5E-05 35.6 4.5 83 93-180 263-356 (360)
272 cd03056 GST_N_4 GST_N family, 82.7 1.8 4E-05 26.6 3.2 57 99-161 2-62 (73)
273 cd03053 GST_N_Phi GST_N family 80.2 7.8 0.00017 24.1 5.5 69 98-178 2-74 (76)
274 PF09695 YtfJ_HI0045: Bacteria 80.0 4.8 0.0001 29.9 4.9 44 135-178 110-155 (160)
275 cd03061 GST_N_CLIC GST_N famil 79.3 16 0.00035 24.4 7.5 64 104-179 20-84 (91)
276 PRK13344 spxA transcriptional 78.4 3.6 7.7E-05 29.5 3.8 32 98-135 2-33 (132)
277 PF06953 ArsD: Arsenical resis 78.0 17 0.00037 25.8 7.1 50 126-178 40-99 (123)
278 PF06764 DUF1223: Protein of u 77.1 14 0.0003 28.6 7.0 77 97-180 1-97 (202)
279 cd03025 DsbA_FrnE_like DsbA fa 76.8 3.3 7.1E-05 30.9 3.4 22 138-159 159-180 (193)
280 COG3011 Predicted thiol-disulf 75.3 15 0.00033 26.6 6.3 68 93-162 5-74 (137)
281 PF00255 GSHPx: Glutathione pe 74.7 10 0.00022 26.2 5.1 46 90-136 17-63 (108)
282 COG5429 Uncharacterized secret 72.9 5.2 0.00011 31.7 3.6 81 95-178 42-138 (261)
283 PF00352 TBP: Transcription fa 69.6 6.5 0.00014 25.8 3.1 59 115-180 20-78 (86)
284 KOG1364 Predicted ubiquitin re 69.6 6.1 0.00013 33.0 3.5 55 127-181 133-189 (356)
285 KOG1422 Intracellular Cl- chan 68.0 37 0.00081 26.5 7.3 65 105-181 20-85 (221)
286 PF05988 DUF899: Bacterial pro 66.7 27 0.00058 27.2 6.3 80 86-165 60-173 (211)
287 cd03049 GST_N_3 GST_N family, 66.4 22 0.00048 21.8 5.1 60 99-161 2-62 (73)
288 cd03021 DsbA_GSTK DsbA family, 66.4 7.2 0.00016 29.9 3.2 39 139-177 170-208 (209)
289 PRK09481 sspA stringent starva 66.4 28 0.0006 26.4 6.5 62 94-161 7-69 (211)
290 PRK10387 glutaredoxin 2; Provi 65.1 46 0.001 24.9 7.5 57 100-161 3-59 (210)
291 TIGR02743 TraW type-F conjugat 62.8 16 0.00036 28.2 4.5 41 116-162 158-198 (202)
292 TIGR02182 GRXB Glutaredoxin, G 62.0 56 0.0012 24.8 7.5 56 101-161 3-58 (209)
293 PF04551 GcpE: GcpE protein; 62.0 6.7 0.00015 32.9 2.4 83 93-180 263-358 (359)
294 COG0821 gcpE 1-hydroxy-2-methy 61.0 14 0.00031 30.8 4.1 75 106-180 264-350 (361)
295 COG0278 Glutaredoxin-related p 60.2 37 0.00079 23.3 5.3 55 103-162 27-83 (105)
296 cd03058 GST_N_Tau GST_N family 57.3 43 0.00092 20.5 8.1 69 99-179 2-72 (74)
297 TIGR00612 ispG_gcpE 1-hydroxy- 56.8 9.5 0.00021 31.8 2.4 79 92-179 253-343 (346)
298 PF08806 Sep15_SelM: Sep15/Sel 56.5 21 0.00047 23.1 3.6 33 148-180 41-75 (78)
299 cd03054 GST_N_Metaxin GST_N fa 55.6 45 0.00099 20.3 6.1 58 104-179 14-71 (72)
300 cd07973 Spt4 Transcription elo 55.4 23 0.0005 24.1 3.8 68 101-178 18-92 (98)
301 PF01216 Calsequestrin: Calseq 55.1 1.3E+02 0.0028 25.5 9.1 89 93-181 267-368 (383)
302 COG2101 SPT15 TATA-box binding 54.1 23 0.00049 26.8 3.8 28 151-180 55-82 (185)
303 cd04518 TBP_archaea archaeal T 52.5 24 0.00052 26.6 3.9 28 151-180 140-167 (174)
304 cd03033 ArsC_15kD Arsenate Red 52.3 16 0.00035 25.3 2.7 22 98-119 2-23 (113)
305 PRK00394 transcription factor; 52.2 24 0.00053 26.6 3.9 28 151-180 141-168 (179)
306 cd00652 TBP_TLF TATA box bindi 50.6 26 0.00057 26.3 3.8 28 151-180 141-168 (174)
307 PLN00062 TATA-box-binding prot 50.5 26 0.00057 26.5 3.8 28 151-180 140-167 (179)
308 PF05176 ATP-synt_10: ATP10 pr 49.4 1.3E+02 0.0029 24.0 7.9 41 138-178 204-247 (252)
309 cd04516 TBP_eukaryotes eukaryo 48.3 30 0.00065 26.0 3.8 28 151-180 140-167 (174)
310 COG3411 Ferredoxin [Energy pro 48.0 39 0.00085 21.1 3.6 29 149-181 17-45 (64)
311 cd04516 TBP_eukaryotes eukaryo 47.4 32 0.0007 25.9 3.9 28 151-180 49-76 (174)
312 cd00652 TBP_TLF TATA box bindi 47.4 32 0.00069 25.8 3.8 29 150-180 48-76 (174)
313 PRK00394 transcription factor; 47.0 33 0.00071 25.9 3.9 29 150-180 47-75 (179)
314 cd03034 ArsC_ArsC Arsenate Red 46.5 26 0.00056 24.1 3.0 31 99-135 2-32 (112)
315 KOG0912 Thiol-disulfide isomer 46.4 80 0.0017 26.3 6.1 98 74-180 208-318 (375)
316 KOG2244 Highly conserved prote 45.9 61 0.0013 29.2 5.7 76 79-155 98-184 (786)
317 PLN00062 TATA-box-binding prot 45.9 34 0.00074 25.9 3.8 28 151-180 49-76 (179)
318 cd04517 TLF TBP-like factors ( 45.8 34 0.00074 25.7 3.8 28 151-180 141-168 (174)
319 TIGR00014 arsC arsenate reduct 45.7 27 0.00058 24.1 3.0 32 99-136 2-33 (114)
320 cd04517 TLF TBP-like factors ( 45.6 37 0.0008 25.5 3.9 28 151-180 49-76 (174)
321 cd04518 TBP_archaea archaeal T 45.6 36 0.00077 25.6 3.9 29 150-180 48-76 (174)
322 PF07511 DUF1525: Protein of u 45.2 50 0.0011 23.1 4.2 15 141-155 76-90 (114)
323 TIGR03757 conj_TIGR03757 integ 45.0 55 0.0012 22.9 4.4 34 141-178 77-110 (113)
324 PRK13738 conjugal transfer pil 44.6 36 0.00077 26.5 3.8 31 132-162 167-198 (209)
325 cd03050 GST_N_Theta GST_N fami 44.4 44 0.00096 20.6 3.7 57 99-161 2-62 (76)
326 cd03022 DsbA_HCCA_Iso DsbA fam 44.1 39 0.00085 24.9 4.0 30 100-129 3-32 (192)
327 COG4604 CeuD ABC-type enteroch 43.2 75 0.0016 25.0 5.3 49 107-163 169-217 (252)
328 cd03038 GST_N_etherase_LigE GS 42.6 86 0.0019 19.7 5.9 66 103-179 13-81 (84)
329 cd03044 GST_N_EF1Bgamma GST_N 41.0 86 0.0019 19.3 7.5 57 100-161 3-62 (75)
330 PF13409 GST_N_2: Glutathione 40.8 85 0.0018 19.2 5.6 66 105-179 1-69 (70)
331 PF10589 NADH_4Fe-4S: NADH-ubi 39.4 18 0.00038 20.9 1.1 20 105-124 18-37 (46)
332 TIGR03765 ICE_PFL_4695 integra 39.2 31 0.00068 23.8 2.4 36 115-154 64-99 (105)
333 COG1393 ArsC Arsenate reductas 38.6 36 0.00079 23.8 2.8 23 97-119 2-24 (117)
334 PF07700 HNOB: Heme NO binding 38.2 81 0.0018 23.3 4.8 42 94-135 127-169 (171)
335 PF11072 DUF2859: Protein of u 38.1 36 0.00077 24.8 2.7 36 115-154 102-137 (142)
336 PF04908 SH3BGR: SH3-binding, 37.2 45 0.00098 22.6 3.0 67 99-165 3-81 (99)
337 PF11287 DUF3088: Protein of u 37.1 56 0.0012 22.8 3.4 51 105-156 23-76 (112)
338 cd03048 GST_N_Ure2p_like GST_N 36.5 1.1E+02 0.0023 19.1 5.2 68 101-179 4-77 (81)
339 PF06491 Disulph_isomer: Disul 35.2 1.7E+02 0.0037 21.1 8.6 96 80-179 21-130 (136)
340 TIGR02174 CXXU_selWTH selT/sel 35.0 73 0.0016 20.0 3.6 26 152-177 43-71 (72)
341 COG2077 Tpx Peroxiredoxin [Pos 34.5 1E+02 0.0022 22.9 4.6 56 79-135 27-85 (158)
342 PF00708 Acylphosphatase: Acyl 34.0 90 0.002 20.4 4.1 37 139-179 25-61 (91)
343 COG3054 Predicted transcriptio 33.4 1.9E+02 0.0041 21.6 5.8 39 140-178 136-177 (184)
344 TIGR03107 glu_aminopep glutamy 33.3 2.3E+02 0.0049 23.8 7.2 81 95-177 251-331 (350)
345 COG5309 Exo-beta-1,3-glucanase 32.7 84 0.0018 25.7 4.2 81 93-179 73-160 (305)
346 TIGR00862 O-ClC intracellular 32.6 2.5E+02 0.0054 22.1 7.8 52 104-161 17-69 (236)
347 cd03030 GRX_SH3BGR Glutaredoxi 32.6 1.5E+02 0.0033 19.6 7.7 35 126-162 30-72 (92)
348 PRK15113 glutathione S-transfe 32.4 2.2E+02 0.0048 21.5 7.5 61 95-161 3-69 (214)
349 COG5494 Predicted thioredoxin/ 32.1 2.5E+02 0.0055 22.1 6.7 70 101-178 16-85 (265)
350 cd03042 GST_N_Zeta GST_N famil 31.9 96 0.0021 18.5 3.8 55 100-160 3-61 (73)
351 KOG0868 Glutathione S-transfer 30.6 18 0.00038 27.7 0.1 66 93-161 3-68 (217)
352 cd03039 GST_N_Sigma_like GST_N 29.9 60 0.0013 19.7 2.5 56 100-161 3-60 (72)
353 PF05679 CHGN: Chondroitin N-a 28.9 2.9E+02 0.0063 24.4 7.4 71 85-155 269-347 (499)
354 COG1519 KdtA 3-deoxy-D-manno-o 28.2 1.7E+02 0.0037 25.4 5.6 29 97-125 50-78 (419)
355 PF09499 RE_ApaLI: ApaLI-like 27.5 1.3E+02 0.0029 22.8 4.3 45 82-126 130-175 (191)
356 PF07315 DUF1462: Protein of u 27.2 2E+02 0.0043 19.3 8.7 70 105-178 8-93 (93)
357 COG2326 Uncharacterized conser 27.1 3.4E+02 0.0074 22.0 6.7 94 83-179 61-165 (270)
358 PRK14449 acylphosphatase; Prov 27.0 1.8E+02 0.0039 19.1 4.6 36 139-178 24-59 (90)
359 cd03024 DsbA_FrnE DsbA family, 26.6 1.1E+02 0.0024 22.7 3.9 25 100-124 3-27 (201)
360 cd03047 GST_N_2 GST_N family, 26.5 1.4E+02 0.003 18.1 3.9 51 100-154 3-57 (73)
361 PF03227 GILT: Gamma interfero 26.5 1.3E+02 0.0029 20.4 4.0 29 98-126 3-34 (108)
362 TIGR03759 conj_TIGR03759 integ 26.3 1.7E+02 0.0036 22.7 4.7 38 96-137 110-147 (200)
363 PF02591 DUF164: Putative zinc 26.2 68 0.0015 19.0 2.2 35 85-119 4-40 (56)
364 PF10262 Rdx: Rdx family; Int 25.9 1.8E+02 0.0038 18.3 5.6 62 106-179 11-75 (76)
365 PF11211 DUF2997: Protein of u 25.8 1.5E+02 0.0032 17.3 3.7 30 152-181 3-34 (48)
366 PRK10853 putative reductase; P 25.6 69 0.0015 22.3 2.4 22 98-119 2-23 (118)
367 PRK09864 putative peptidase; P 25.1 4.2E+02 0.0091 22.3 7.4 82 94-177 249-331 (356)
368 PF10865 DUF2703: Domain of un 24.9 1.3E+02 0.0029 21.2 3.8 54 104-162 13-73 (120)
369 TIGR01616 nitro_assoc nitrogen 24.8 90 0.0019 22.1 2.9 23 97-119 2-24 (126)
370 COG0295 Cdd Cytidine deaminase 24.2 95 0.0021 22.4 2.9 9 105-113 87-95 (134)
371 KOG2990 C2C2-type Zn-finger pr 24.1 50 0.0011 27.0 1.6 21 94-114 40-63 (317)
372 COG2093 DNA-directed RNA polym 24.0 50 0.0011 20.5 1.2 28 118-148 28-55 (64)
373 KOG1420 Ca2+-activated K+ chan 23.5 55 0.0012 29.7 1.9 15 1-15 1-15 (1103)
374 cd03021 DsbA_GSTK DsbA family, 23.5 1.7E+02 0.0037 22.1 4.5 36 97-132 2-37 (209)
375 PRK10026 arsenate reductase; P 23.2 90 0.0019 22.6 2.7 22 98-119 4-25 (141)
376 PF02484 Rhabdo_NV: Rhabdoviru 22.9 89 0.0019 20.9 2.4 38 142-179 17-54 (111)
377 KOG1731 FAD-dependent sulfhydr 22.7 67 0.0015 28.9 2.3 53 128-181 217-269 (606)
378 PRK14420 acylphosphatase; Prov 22.7 2.3E+02 0.005 18.5 4.5 37 139-179 23-59 (91)
379 PF10405 BHD_3: Rad4 beta-hair 22.3 1.7E+02 0.0037 18.8 3.6 49 130-178 22-73 (76)
380 cd02979 PHOX_C FAD-dependent P 22.1 3.3E+02 0.0071 20.0 5.7 42 138-179 124-166 (167)
381 PF03960 ArsC: ArsC family; I 22.0 1.3E+02 0.0028 20.3 3.2 31 101-137 1-31 (110)
382 KOG0095 GTPase Rab30, small G 21.6 1.1E+02 0.0024 22.8 2.9 43 83-125 66-110 (213)
383 cd03062 TRX_Fd_Sucrase TRX-lik 21.5 1.6E+02 0.0036 19.5 3.6 65 104-181 14-83 (97)
384 cd05855 Ig_TrkB_d5 Fifth domai 21.0 68 0.0015 20.6 1.5 19 144-162 5-25 (79)
385 PRK11752 putative S-transferas 20.6 3.5E+02 0.0077 21.3 6.0 55 101-155 47-107 (264)
386 TIGR03521 GldG gliding-associa 20.1 6.3E+02 0.014 22.6 9.5 77 74-151 28-117 (552)
No 1
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.3e-31 Score=192.24 Aligned_cols=105 Identities=50% Similarity=0.957 Sum_probs=100.7
Q ss_pred ceeeeccchhhHHHhhCCCcEEEEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEe
Q 030222 77 QETAVEDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFK 156 (181)
Q Consensus 77 ~~~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~y~V~~~Ptl~i~~ 156 (181)
.....+..+|++.+++++.||+|+|||+||+||+.+.|.++++..+|.+++++++||+|++.+++.+|+|.++||+++|+
T Consensus 44 ~~~~~s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~ela~~Y~I~avPtvlvfk 123 (150)
T KOG0910|consen 44 LFNVQSDSEFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPELAEDYEISAVPTVLVFK 123 (150)
T ss_pred cccccCHHHHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccchHhhcceeeeeEEEEEE
Confidence 44456789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEeCCCCHHHHHHHHHhhC
Q 030222 157 NGEKKDTVIGAVPKSTLTTSIEKFL 181 (181)
Q Consensus 157 ~G~~~~~~~G~~~~~~l~~~i~~~L 181 (181)
||++++++.|..+.+.|.++|+++|
T Consensus 124 nGe~~d~~vG~~~~~~l~~~i~k~l 148 (150)
T KOG0910|consen 124 NGEKVDRFVGAVPKEQLRSLIKKFL 148 (150)
T ss_pred CCEEeeeecccCCHHHHHHHHHHHh
Confidence 9999999999999999999999985
No 2
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.93 E-value=1.1e-25 Score=159.71 Aligned_cols=104 Identities=13% Similarity=0.195 Sum_probs=97.1
Q ss_pred ceeeeccchhhHHHhhCCCcEEEEEECCCChh--hh--hhhhhHHHHHHHh--cCceEEEEEeCCCChHHHHHcCCCccc
Q 030222 77 QETAVEDATWQSLVLDSGSPVLVEFWAPWCGP--CR--MIHPIIDELSKQY--VGKLKCYKVNTDESPSIATRYGIRSIP 150 (181)
Q Consensus 77 ~~~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~--C~--~~~p~l~~la~~~--~~~v~~~~vd~d~~~~l~~~y~V~~~P 150 (181)
....+++++|++.+.+++.++|++||++||++ |+ ++.|.+.+++.++ .+++.|++||+|++++++++|||+++|
T Consensus 10 ~v~~lt~~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~La~~~~I~~iP 89 (120)
T cd03065 10 RVIDLNEKNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAKVAKKLGLDEED 89 (120)
T ss_pred ceeeCChhhHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHcCCcccc
Confidence 34457899999999999999999999999987 99 8999999999999 778999999999999999999999999
Q ss_pred EEEEEeCCeEEEEEeCCCCHHHHHHHHHhhC
Q 030222 151 TVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 181 (181)
Q Consensus 151 tl~i~~~G~~~~~~~G~~~~~~l~~~i~~~L 181 (181)
|+++|++|+++. +.|.++.+.|.+||++++
T Consensus 90 Tl~lfk~G~~v~-~~G~~~~~~l~~~l~~~~ 119 (120)
T cd03065 90 SIYVFKDDEVIE-YDGEFAADTLVEFLLDLI 119 (120)
T ss_pred EEEEEECCEEEE-eeCCCCHHHHHHHHHHHh
Confidence 999999999887 999999999999999874
No 3
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.92 E-value=8.2e-25 Score=154.05 Aligned_cols=102 Identities=8% Similarity=0.124 Sum_probs=93.1
Q ss_pred cceeeeccchhhHHH--hhCCCcEEEEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCCCChHHH-HHcCCCcccEE
Q 030222 76 AQETAVEDATWQSLV--LDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIA-TRYGIRSIPTV 152 (181)
Q Consensus 76 ~~~~~l~~~~~~~~~--~~~~~~vlV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~-~~y~V~~~Ptl 152 (181)
.....+++++|+... ..++++++|+||++||++|+.+.|.++++++++.+.+.+++||+|++.+++ ++|+|+++|||
T Consensus 9 ~~v~~l~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l~~~~~~I~~~PTl 88 (113)
T cd03006 9 SPVLDFYKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQGKCRKQKHFFYFPVI 88 (113)
T ss_pred CCeEEechhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChHHHHHhcCCcccCEE
Confidence 445678899999863 577889999999999999999999999999999988999999999999999 59999999999
Q ss_pred EEEeCCeEEEEEeCCCCHHHHHHHH
Q 030222 153 MIFKNGEKKDTVIGAVPKSTLTTSI 177 (181)
Q Consensus 153 ~i~~~G~~~~~~~G~~~~~~l~~~i 177 (181)
++|++|+...++.|.++.+.|..|+
T Consensus 89 ~lf~~g~~~~~y~G~~~~~~i~~~~ 113 (113)
T cd03006 89 HLYYRSRGPIEYKGPMRAPYMEKFV 113 (113)
T ss_pred EEEECCccceEEeCCCCHHHHHhhC
Confidence 9999999989999999999998763
No 4
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.92 E-value=3.2e-24 Score=147.35 Aligned_cols=102 Identities=35% Similarity=0.775 Sum_probs=97.3
Q ss_pred eeeccchhhHHHhhCCCcEEEEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEeCC
Q 030222 79 TAVEDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNG 158 (181)
Q Consensus 79 ~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~y~V~~~Ptl~i~~~G 158 (181)
..+++++|+..+.+++++++|+||++||++|+.+.|.++++++++.+++.++.+|+++++.++++|+|+++||++++++|
T Consensus 2 ~~lt~~~f~~~i~~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g 81 (103)
T PF00085_consen 2 IVLTDENFEKFINESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKELCKKYGVKSVPTIIFFKNG 81 (103)
T ss_dssp EEESTTTHHHHHTTTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHHHHHHTTCSSSSEEEEEETT
T ss_pred EECCHHHHHHHHHccCCCEEEEEeCCCCCccccccceecccccccccccccchhhhhccchhhhccCCCCCCEEEEEECC
Confidence 46789999998887789999999999999999999999999999998899999999999999999999999999999999
Q ss_pred eEEEEEeCCCCHHHHHHHHHhh
Q 030222 159 EKKDTVIGAVPKSTLTTSIEKF 180 (181)
Q Consensus 159 ~~~~~~~G~~~~~~l~~~i~~~ 180 (181)
+...++.|..+.+.|.+||++.
T Consensus 82 ~~~~~~~g~~~~~~l~~~i~~~ 103 (103)
T PF00085_consen 82 KEVKRYNGPRNAESLIEFIEKH 103 (103)
T ss_dssp EEEEEEESSSSHHHHHHHHHHH
T ss_pred cEEEEEECCCCHHHHHHHHHcC
Confidence 9999999999999999999974
No 5
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.92 E-value=2.1e-25 Score=156.42 Aligned_cols=87 Identities=20% Similarity=0.350 Sum_probs=79.5
Q ss_pred chhhHHHhh-CCCcEEEEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEeCCeEEE
Q 030222 84 ATWQSLVLD-SGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKD 162 (181)
Q Consensus 84 ~~~~~~~~~-~~~~vlV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~y~V~~~Ptl~i~~~G~~~~ 162 (181)
++|+..+.. .+++++|+|||+||++|+.+.|.++++++++++.+.|++||+|++++++++|+|+++||+++|++|+.+.
T Consensus 3 ~~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~la~~~~V~~iPTf~~fk~G~~v~ 82 (114)
T cd02954 3 WAVDQAILSEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPDFNKMYELYDPPTVMFFFRNKHMK 82 (114)
T ss_pred HHHHHHHhccCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHHHHHHcCCCCCCEEEEEECCEEEE
Confidence 456666654 5789999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred EEeCCCCH
Q 030222 163 TVIGAVPK 170 (181)
Q Consensus 163 ~~~G~~~~ 170 (181)
+..|..+.
T Consensus 83 ~~~G~~~~ 90 (114)
T cd02954 83 IDLGTGNN 90 (114)
T ss_pred EEcCCCCC
Confidence 99987654
No 6
>PHA02278 thioredoxin-like protein
Probab=99.92 E-value=1.9e-24 Score=149.89 Aligned_cols=93 Identities=17% Similarity=0.244 Sum_probs=83.2
Q ss_pred cchhhHHHhhCCCcEEEEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCCCC----hHHHHHcCCCcccEEEEEeCC
Q 030222 83 DATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDES----PSIATRYGIRSIPTVMIFKNG 158 (181)
Q Consensus 83 ~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~----~~l~~~y~V~~~Ptl~i~~~G 158 (181)
..+|...+ .++++++|+|||+||++|+.+.|.++++++++..++.++.+|+|.+ ++++++|+|+++||+++|++|
T Consensus 4 ~~~~~~~i-~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk~G 82 (103)
T PHA02278 4 LVDLNTAI-RQKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYKDG 82 (103)
T ss_pred HHHHHHHH-hCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEEEEECC
Confidence 45676655 5788999999999999999999999999998766688999999986 689999999999999999999
Q ss_pred eEEEEEeCCCCHHHHHHH
Q 030222 159 EKKDTVIGAVPKSTLTTS 176 (181)
Q Consensus 159 ~~~~~~~G~~~~~~l~~~ 176 (181)
+.+.++.|..+.+.|.++
T Consensus 83 ~~v~~~~G~~~~~~l~~~ 100 (103)
T PHA02278 83 QLVKKYEDQVTPMQLQEL 100 (103)
T ss_pred EEEEEEeCCCCHHHHHhh
Confidence 999999999999887764
No 7
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.92 E-value=1.6e-24 Score=150.00 Aligned_cols=99 Identities=27% Similarity=0.569 Sum_probs=91.9
Q ss_pred eeeccchhhHHHhhCCCcEEEEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEeCC
Q 030222 79 TAVEDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNG 158 (181)
Q Consensus 79 ~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~y~V~~~Ptl~i~~~G 158 (181)
..++.++|++.+...+++++|+||++||++|+.+.|.++++++++.+.+.++.+|++++++++++|+|+++||+++|++|
T Consensus 4 ~~l~~~~f~~~i~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g 83 (104)
T cd03004 4 ITLTPEDFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYESLCQQANIRAYPTIRLYPGN 83 (104)
T ss_pred eEcCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHHHHHHcCCCcccEEEEEcCC
Confidence 45778899998888888999999999999999999999999999988899999999999999999999999999999887
Q ss_pred -eEEEEEeCCCC-HHHHHHHH
Q 030222 159 -EKKDTVIGAVP-KSTLTTSI 177 (181)
Q Consensus 159 -~~~~~~~G~~~-~~~l~~~i 177 (181)
+.+.++.|..+ .++|.+||
T Consensus 84 ~~~~~~~~G~~~~~~~l~~~i 104 (104)
T cd03004 84 ASKYHSYNGWHRDADSILEFI 104 (104)
T ss_pred CCCceEccCCCCCHHHHHhhC
Confidence 89999999987 88888875
No 8
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.91 E-value=7e-24 Score=144.68 Aligned_cols=94 Identities=34% Similarity=0.740 Sum_probs=87.6
Q ss_pred hhhHHHhhC-CCcEEEEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEeCCeEEEE
Q 030222 85 TWQSLVLDS-GSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDT 163 (181)
Q Consensus 85 ~~~~~~~~~-~~~vlV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~y~V~~~Ptl~i~~~G~~~~~ 163 (181)
+|+..+.+. +++++|+||++||++|+.+.|.++++++.+.+.+.++.+|++++++++++|+|+++||+++|++|+.+.+
T Consensus 2 ~f~~~i~~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~ 81 (96)
T cd02956 2 NFQQVLQESTQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQIAQQFGVQALPTVYLFAAGQPVDG 81 (96)
T ss_pred ChHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHHHHHHcCCCCCCEEEEEeCCEEeee
Confidence 567767655 7899999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred EeCCCCHHHHHHHHH
Q 030222 164 VIGAVPKSTLTTSIE 178 (181)
Q Consensus 164 ~~G~~~~~~l~~~i~ 178 (181)
+.|..+.++|.++|+
T Consensus 82 ~~g~~~~~~l~~~l~ 96 (96)
T cd02956 82 FQGAQPEEQLRQMLD 96 (96)
T ss_pred ecCCCCHHHHHHHhC
Confidence 999999999999885
No 9
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.91 E-value=3.4e-24 Score=147.81 Aligned_cols=98 Identities=22% Similarity=0.475 Sum_probs=90.4
Q ss_pred eeeeccchhhHHHhhCCCcEEEEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEeC
Q 030222 78 ETAVEDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKN 157 (181)
Q Consensus 78 ~~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~y~V~~~Ptl~i~~~ 157 (181)
...++.++|+..+ .++++++|+||++||++|+.+.|.++++++++++++.|+.||+|++++++++|+|+++||+++|++
T Consensus 3 ~~~l~~~~f~~~v-~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~ 81 (101)
T cd03003 3 IVTLDRGDFDAAV-NSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRMLCRSQGVNSYPSLYVFPS 81 (101)
T ss_pred eEEcCHhhHHHHh-cCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHHHHHHcCCCccCEEEEEcC
Confidence 3467888999866 456899999999999999999999999999999889999999999999999999999999999999
Q ss_pred CeEEEEEeCCCCHHHHHHH
Q 030222 158 GEKKDTVIGAVPKSTLTTS 176 (181)
Q Consensus 158 G~~~~~~~G~~~~~~l~~~ 176 (181)
|+.+.++.|.++.+.|.+|
T Consensus 82 g~~~~~~~G~~~~~~l~~f 100 (101)
T cd03003 82 GMNPEKYYGDRSKESLVKF 100 (101)
T ss_pred CCCcccCCCCCCHHHHHhh
Confidence 9999999999999988876
No 10
>PRK09381 trxA thioredoxin; Provisional
Probab=99.91 E-value=1.3e-23 Score=146.77 Aligned_cols=105 Identities=44% Similarity=0.896 Sum_probs=97.4
Q ss_pred ceeeeccchhhHHHhhCCCcEEEEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEe
Q 030222 77 QETAVEDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFK 156 (181)
Q Consensus 77 ~~~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~y~V~~~Ptl~i~~ 156 (181)
....++.++|+..+.+.+++++|+||++||++|+.+.|.++++++++++++.++.+|++.++.++++|+|+++||+++|+
T Consensus 4 ~v~~~~~~~~~~~v~~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~ 83 (109)
T PRK09381 4 KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFK 83 (109)
T ss_pred cceeeChhhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhHHHhCCCCcCCEEEEEe
Confidence 34456778899877777889999999999999999999999999999988999999999999999999999999999999
Q ss_pred CCeEEEEEeCCCCHHHHHHHHHhhC
Q 030222 157 NGEKKDTVIGAVPKSTLTTSIEKFL 181 (181)
Q Consensus 157 ~G~~~~~~~G~~~~~~l~~~i~~~L 181 (181)
+|+++.+..|..+.++|.++|++.|
T Consensus 84 ~G~~~~~~~G~~~~~~l~~~i~~~~ 108 (109)
T PRK09381 84 NGEVAATKVGALSKGQLKEFLDANL 108 (109)
T ss_pred CCeEEEEecCCCCHHHHHHHHHHhc
Confidence 9999999999999999999999865
No 11
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=3.1e-24 Score=170.36 Aligned_cols=104 Identities=44% Similarity=0.890 Sum_probs=98.5
Q ss_pred eeeeccchhhHHHhhC--CCcEEEEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEE
Q 030222 78 ETAVEDATWQSLVLDS--GSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIF 155 (181)
Q Consensus 78 ~~~l~~~~~~~~~~~~--~~~vlV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~y~V~~~Ptl~i~ 155 (181)
...+++.+|...++.+ .+||+|+||+|||++|+.+.|.|++++.+|+|++.+.+||+|+++.++.+|||+++||++.|
T Consensus 25 I~dvT~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~vAaqfgiqsIPtV~af 104 (304)
T COG3118 25 IKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMVAAQFGVQSIPTVYAF 104 (304)
T ss_pred ceechHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchhHHHHhCcCcCCeEEEe
Confidence 5667889999988765 45999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCeEEEEEeCCCCHHHHHHHHHhhC
Q 030222 156 KNGEKKDTVIGAVPKSTLTTSIEKFL 181 (181)
Q Consensus 156 ~~G~~~~~~~G~~~~~~l~~~i~~~L 181 (181)
++|+.++.+.|..+++.+++||++++
T Consensus 105 ~dGqpVdgF~G~qPesqlr~~ld~~~ 130 (304)
T COG3118 105 KDGQPVDGFQGAQPESQLRQFLDKVL 130 (304)
T ss_pred eCCcCccccCCCCcHHHHHHHHHHhc
Confidence 99999999999999999999999875
No 12
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.91 E-value=6.9e-24 Score=149.03 Aligned_cols=102 Identities=18% Similarity=0.333 Sum_probs=92.6
Q ss_pred eeeccchhhHHHhh--CCCcEEEEEECCCChhhhhhhhhHHHHHHHhcC-ceEEEEEeCCCChHHHHHcCCCcccEEEEE
Q 030222 79 TAVEDATWQSLVLD--SGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVG-KLKCYKVNTDESPSIATRYGIRSIPTVMIF 155 (181)
Q Consensus 79 ~~l~~~~~~~~~~~--~~~~vlV~F~a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~d~~~~l~~~y~V~~~Ptl~i~ 155 (181)
..++.++|.+.+.. .+++++|+||++||++|+.+.|.++++++++.+ ++.++.||+|.++.++++|+|+++||+++|
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~i~ 86 (111)
T cd02963 7 YSLTFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRLARKLGAHSVPAIVGI 86 (111)
T ss_pred heeeHHHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHHHHHHcCCccCCEEEEE
Confidence 34567788766653 578999999999999999999999999999975 589999999999999999999999999999
Q ss_pred eCCeEEEEEeCCCCHHHHHHHHHhh
Q 030222 156 KNGEKKDTVIGAVPKSTLTTSIEKF 180 (181)
Q Consensus 156 ~~G~~~~~~~G~~~~~~l~~~i~~~ 180 (181)
++|+.+.++.|..+.+.|.++|+++
T Consensus 87 ~~g~~~~~~~G~~~~~~l~~~i~~~ 111 (111)
T cd02963 87 INGQVTFYHDSSFTKQHVVDFVRKL 111 (111)
T ss_pred ECCEEEEEecCCCCHHHHHHHHhcC
Confidence 9999999999999999999999875
No 13
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.91 E-value=2.1e-23 Score=144.62 Aligned_cols=96 Identities=24% Similarity=0.335 Sum_probs=84.1
Q ss_pred ccchhhHHHhhC-CCcEEEEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCCCCh---HHHHHcCCCcccEEEEEeC
Q 030222 82 EDATWQSLVLDS-GSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESP---SIATRYGIRSIPTVMIFKN 157 (181)
Q Consensus 82 ~~~~~~~~~~~~-~~~vlV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~---~l~~~y~V~~~Ptl~i~~~ 157 (181)
+.++|++.+.+. +++++|+||++||++|+.++|.++++++++ +++.|+.||.|++. +++++|+|+++||+++|++
T Consensus 2 ~~~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~-~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~ 80 (103)
T cd02985 2 SVEELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC-NDVVFLLVNGDENDSTMELCRREKIIEVPHFLFYKD 80 (103)
T ss_pred CHHHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC-CCCEEEEEECCCChHHHHHHHHcCCCcCCEEEEEeC
Confidence 356777877654 889999999999999999999999999999 56999999999874 7999999999999999999
Q ss_pred CeEEEEEeCCCCHHHHHHHHHh
Q 030222 158 GEKKDTVIGAVPKSTLTTSIEK 179 (181)
Q Consensus 158 G~~~~~~~G~~~~~~l~~~i~~ 179 (181)
|+++.++.|.. .++|.+.|.+
T Consensus 81 G~~v~~~~G~~-~~~l~~~~~~ 101 (103)
T cd02985 81 GEKIHEEEGIG-PDELIGDVLY 101 (103)
T ss_pred CeEEEEEeCCC-HHHHHHHHHh
Confidence 99999999965 5567777654
No 14
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=2.4e-23 Score=144.73 Aligned_cols=88 Identities=34% Similarity=0.739 Sum_probs=81.3
Q ss_pred hhCCCcEEEEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEeCCeEEEEEeCCCCH
Q 030222 91 LDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPK 170 (181)
Q Consensus 91 ~~~~~~vlV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~y~V~~~Ptl~i~~~G~~~~~~~G~~~~ 170 (181)
...+++++|+|||+|||+|+.+.|.+.+++++|++ +.|+++|+|+..++++.|+|+.+|||+++++|+.+.++.|....
T Consensus 18 ~~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~-v~Flkvdvde~~~~~~~~~V~~~PTf~f~k~g~~~~~~vGa~~~ 96 (106)
T KOG0907|consen 18 EAGDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD-VVFLKVDVDELEEVAKEFNVKAMPTFVFYKGGEEVDEVVGANKA 96 (106)
T ss_pred hCCCCeEEEEEECCCCcchhhhhhHHHHHHHHCCC-CEEEEEecccCHhHHHhcCceEeeEEEEEECCEEEEEEecCCHH
Confidence 33468999999999999999999999999999998 99999999999999999999999999999999999999998544
Q ss_pred HHHHHHHHhh
Q 030222 171 STLTTSIEKF 180 (181)
Q Consensus 171 ~~l~~~i~~~ 180 (181)
++++.|++.
T Consensus 97 -~l~~~i~~~ 105 (106)
T KOG0907|consen 97 -ELEKKIAKH 105 (106)
T ss_pred -HHHHHHHhc
Confidence 788888764
No 15
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.90 E-value=3.8e-23 Score=144.15 Aligned_cols=95 Identities=17% Similarity=0.334 Sum_probs=88.8
Q ss_pred eeccchhhHHHhhCCCcEEEEEECCC--ChhhhhhhhhHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEeC
Q 030222 80 AVEDATWQSLVLDSGSPVLVEFWAPW--CGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKN 157 (181)
Q Consensus 80 ~l~~~~~~~~~~~~~~~vlV~F~a~w--C~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~y~V~~~Ptl~i~~~ 157 (181)
.++..+|++.+ +.+.+++|+||++| ||+|+.+.|.+++++++|++.+.|+.+|+|++++++.+|+|+++||+++|++
T Consensus 14 ~~~~~~~~~~~-~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~~la~~f~V~sIPTli~fkd 92 (111)
T cd02965 14 RVDAATLDDWL-AAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQALAARFGVLRTPALLFFRD 92 (111)
T ss_pred ccccccHHHHH-hCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCHHHHHHcCCCcCCEEEEEEC
Confidence 46788999755 77889999999997 9999999999999999999889999999999999999999999999999999
Q ss_pred CeEEEEEeCCCCHHHHHH
Q 030222 158 GEKKDTVIGAVPKSTLTT 175 (181)
Q Consensus 158 G~~~~~~~G~~~~~~l~~ 175 (181)
|+++.+..|..+.+++.+
T Consensus 93 Gk~v~~~~G~~~~~e~~~ 110 (111)
T cd02965 93 GRYVGVLAGIRDWDEYVA 110 (111)
T ss_pred CEEEEEEeCccCHHHHhh
Confidence 999999999999998864
No 16
>PRK10996 thioredoxin 2; Provisional
Probab=99.90 E-value=5.9e-23 Score=149.80 Aligned_cols=103 Identities=41% Similarity=0.838 Sum_probs=95.1
Q ss_pred eeeeccchhhHHHhhCCCcEEEEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEeC
Q 030222 78 ETAVEDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKN 157 (181)
Q Consensus 78 ~~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~y~V~~~Ptl~i~~~ 157 (181)
...++..+|+..+ .++++++|+||++||++|+.+.|.++++++++.+++.++.+|.+++++++++|+|+++||+++|++
T Consensus 37 ~i~~~~~~~~~~i-~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~V~~~Ptlii~~~ 115 (139)
T PRK10996 37 VINATGETLDKLL-QDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERELSARFRIRSIPTIMIFKN 115 (139)
T ss_pred CEEcCHHHHHHHH-hCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHHHHHhcCCCccCEEEEEEC
Confidence 3446778888754 568899999999999999999999999999998889999999999999999999999999999999
Q ss_pred CeEEEEEeCCCCHHHHHHHHHhhC
Q 030222 158 GEKKDTVIGAVPKSTLTTSIEKFL 181 (181)
Q Consensus 158 G~~~~~~~G~~~~~~l~~~i~~~L 181 (181)
|+++.++.|..+.+.+.++|++++
T Consensus 116 G~~v~~~~G~~~~e~l~~~l~~~~ 139 (139)
T PRK10996 116 GQVVDMLNGAVPKAPFDSWLNEAL 139 (139)
T ss_pred CEEEEEEcCCCCHHHHHHHHHHhC
Confidence 999999999999999999999875
No 17
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.90 E-value=5.6e-23 Score=142.26 Aligned_cols=98 Identities=22% Similarity=0.533 Sum_probs=87.7
Q ss_pred eeccchhhHHHhhCCCcEEEEEECCCChhhhhhhhhHHHHHHHhcC-ceEEEEEeCCCChHHHHHcCCCcccEEEEEeCC
Q 030222 80 AVEDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVG-KLKCYKVNTDESPSIATRYGIRSIPTVMIFKNG 158 (181)
Q Consensus 80 ~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~d~~~~l~~~y~V~~~Ptl~i~~~G 158 (181)
..+.++|+.++ .++++++|+||++||++|+.+.|.++++++++++ .+.++.+|.| +++++++|+|+++||+++|++|
T Consensus 4 i~~~~~~~~~i-~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~~~~~~~~v~~~Pt~~~~~~g 81 (102)
T cd02948 4 INNQEEWEELL-SNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TIDTLKRYRGKCEPTFLFYKNG 81 (102)
T ss_pred ccCHHHHHHHH-ccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CHHHHHHcCCCcCcEEEEEECC
Confidence 34577788854 5788999999999999999999999999999985 4789999999 7889999999999999999999
Q ss_pred eEEEEEeCCCCHHHHHHHHHhh
Q 030222 159 EKKDTVIGAVPKSTLTTSIEKF 180 (181)
Q Consensus 159 ~~~~~~~G~~~~~~l~~~i~~~ 180 (181)
+++.+..|. +.+.+.++|+++
T Consensus 82 ~~~~~~~G~-~~~~~~~~i~~~ 102 (102)
T cd02948 82 ELVAVIRGA-NAPLLNKTITEL 102 (102)
T ss_pred EEEEEEecC-ChHHHHHHHhhC
Confidence 999999996 778899999874
No 18
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.89 E-value=9.3e-23 Score=148.17 Aligned_cols=99 Identities=20% Similarity=0.301 Sum_probs=88.4
Q ss_pred ccchhhHHHhh-CCCcEEEEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEE-EEeCCe
Q 030222 82 EDATWQSLVLD-SGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVM-IFKNGE 159 (181)
Q Consensus 82 ~~~~~~~~~~~-~~~~vlV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~y~V~~~Ptl~-i~~~G~ 159 (181)
+..+|++.+.. .+++|+|.||++||++|+.+.|.|+++++++.+.+.|++||+|+++++++.|+|++.|+++ +|++|+
T Consensus 10 s~~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~dla~~y~I~~~~t~~~ffk~g~ 89 (142)
T PLN00410 10 SGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPCTVMFFFRNKH 89 (142)
T ss_pred CHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHcCccCCCcEEEEEECCe
Confidence 46778887764 4779999999999999999999999999999988999999999999999999999887655 889999
Q ss_pred -EEEEEeC--------CCCHHHHHHHHHhh
Q 030222 160 -KKDTVIG--------AVPKSTLTTSIEKF 180 (181)
Q Consensus 160 -~~~~~~G--------~~~~~~l~~~i~~~ 180 (181)
.+.+.+| ..+.++|++.|+.+
T Consensus 90 ~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~ 119 (142)
T PLN00410 90 IMIDLGTGNNNKINWALKDKQEFIDIVETV 119 (142)
T ss_pred EEEEEecccccccccccCCHHHHHHHHHHH
Confidence 8889999 68889999998865
No 19
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.89 E-value=6.8e-23 Score=142.72 Aligned_cols=100 Identities=23% Similarity=0.547 Sum_probs=91.8
Q ss_pred eeeccchhhHHHhhCCCcEEEEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCCC--ChHHHHHcCCCcccEEEEEe
Q 030222 79 TAVEDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDE--SPSIATRYGIRSIPTVMIFK 156 (181)
Q Consensus 79 ~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~--~~~l~~~y~V~~~Ptl~i~~ 156 (181)
..++.++|+..+.+.+++++|+||++||++|+.+.|.++++++++.+.+.++.+|+++ +++++++|+|+++||+++|+
T Consensus 3 ~~l~~~~~~~~i~~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~~~~ 82 (109)
T cd03002 3 YELTPKNFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGVQGFPTLKVFR 82 (109)
T ss_pred EEcchhhHHHHHhcCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCCCcCCEEEEEe
Confidence 4678899999888889999999999999999999999999999999889999999998 88999999999999999998
Q ss_pred CCe-----EEEEEeCCCCHHHHHHHHH
Q 030222 157 NGE-----KKDTVIGAVPKSTLTTSIE 178 (181)
Q Consensus 157 ~G~-----~~~~~~G~~~~~~l~~~i~ 178 (181)
+|+ ....+.|..+.+.|.+||.
T Consensus 83 ~~~~~~~~~~~~~~G~~~~~~l~~fi~ 109 (109)
T cd03002 83 PPKKASKHAVEDYNGERSAKAIVDFVL 109 (109)
T ss_pred CCCcccccccccccCccCHHHHHHHhC
Confidence 886 4568899999999999984
No 20
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.89 E-value=7.7e-23 Score=141.18 Aligned_cols=84 Identities=21% Similarity=0.464 Sum_probs=78.5
Q ss_pred hCCCcEEEEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCC-CChHHHHHcCCCcccEEEEEeCCeEEEEEeCCCCH
Q 030222 92 DSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTD-ESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPK 170 (181)
Q Consensus 92 ~~~~~vlV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d-~~~~l~~~y~V~~~Ptl~i~~~G~~~~~~~G~~~~ 170 (181)
.+|++++|+||++||++|+.+.|.++++++++++ +.++.||.+ ++++++++|+|+++||+++|++| .+.++.|.++.
T Consensus 16 ~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~-~~~~~vd~~~~~~~l~~~~~V~~~PT~~lf~~g-~~~~~~G~~~~ 93 (100)
T cd02999 16 NREDYTAVLFYASWCPFSASFRPHFNALSSMFPQ-IRHLAIEESSIKPSLLSRYGVVGFPTILLFNST-PRVRYNGTRTL 93 (100)
T ss_pred cCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhcc-CceEEEECCCCCHHHHHhcCCeecCEEEEEcCC-ceeEecCCCCH
Confidence 4689999999999999999999999999999975 889999999 89999999999999999999999 77899999999
Q ss_pred HHHHHHH
Q 030222 171 STLTTSI 177 (181)
Q Consensus 171 ~~l~~~i 177 (181)
+.|.+||
T Consensus 94 ~~l~~f~ 100 (100)
T cd02999 94 DSLAAFY 100 (100)
T ss_pred HHHHhhC
Confidence 9998875
No 21
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.89 E-value=1.2e-22 Score=141.80 Aligned_cols=99 Identities=31% Similarity=0.555 Sum_probs=87.7
Q ss_pred eeeeccchhhHHHhhCCCcEEEEEECCCChhhhhhhhhHHHHHHHhc------CceEEEEEeCCCChHHHHHcCCCcccE
Q 030222 78 ETAVEDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYV------GKLKCYKVNTDESPSIATRYGIRSIPT 151 (181)
Q Consensus 78 ~~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~la~~~~------~~v~~~~vd~d~~~~l~~~y~V~~~Pt 151 (181)
...++.++|+..+ ..+++++|+||++||++|+.+.|.++++++++. +++.++.+|+|++++++++|+|+++||
T Consensus 3 v~~l~~~~f~~~i-~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt 81 (108)
T cd02996 3 IVSLTSGNIDDIL-QSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRINKYPT 81 (108)
T ss_pred eEEcCHhhHHHHH-hcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCCcCCE
Confidence 4567888999854 677899999999999999999999999998763 248899999999999999999999999
Q ss_pred EEEEeCCe-EEEEEeCCCCHHHHHHHH
Q 030222 152 VMIFKNGE-KKDTVIGAVPKSTLTTSI 177 (181)
Q Consensus 152 l~i~~~G~-~~~~~~G~~~~~~l~~~i 177 (181)
+++|++|+ ....+.|.++.+.|.+||
T Consensus 82 l~~~~~g~~~~~~~~g~~~~~~l~~fi 108 (108)
T cd02996 82 LKLFRNGMMMKREYRGQRSVEALAEFV 108 (108)
T ss_pred EEEEeCCcCcceecCCCCCHHHHHhhC
Confidence 99999999 457888999999998875
No 22
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.89 E-value=3.2e-22 Score=137.76 Aligned_cols=98 Identities=26% Similarity=0.566 Sum_probs=87.3
Q ss_pred eeeeccchhhHHHhhCCCcEEEEEECCCChhhhhhhhhHHHHHHHhcC-ceEEEEEeCCCChHHHHHcCCCcccEEEEEe
Q 030222 78 ETAVEDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVG-KLKCYKVNTDESPSIATRYGIRSIPTVMIFK 156 (181)
Q Consensus 78 ~~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~d~~~~l~~~y~V~~~Ptl~i~~ 156 (181)
+..++.++|+.++ +++ ++|+||++||++|+.+.|.++++++.+.+ ++.++.+|+++++.++++|+|+++||+++++
T Consensus 3 v~~l~~~~f~~~~--~~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~ 79 (101)
T cd02994 3 VVELTDSNWTLVL--EGE-WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGLSGRFFVTALPTIYHAK 79 (101)
T ss_pred eEEcChhhHHHHh--CCC-EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHhHHHHcCCcccCEEEEeC
Confidence 4467888999865 333 78999999999999999999999998764 5999999999999999999999999999999
Q ss_pred CCeEEEEEeCCCCHHHHHHHHHh
Q 030222 157 NGEKKDTVIGAVPKSTLTTSIEK 179 (181)
Q Consensus 157 ~G~~~~~~~G~~~~~~l~~~i~~ 179 (181)
+|++ .++.|..+.++|.++|++
T Consensus 80 ~g~~-~~~~G~~~~~~l~~~i~~ 101 (101)
T cd02994 80 DGVF-RRYQGPRDKEDLISFIEE 101 (101)
T ss_pred CCCE-EEecCCCCHHHHHHHHhC
Confidence 9985 789999999999999874
No 23
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.89 E-value=5.3e-22 Score=135.63 Aligned_cols=100 Identities=55% Similarity=1.079 Sum_probs=92.8
Q ss_pred ccchhhHHHhhCCCcEEEEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEeCCeEE
Q 030222 82 EDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKK 161 (181)
Q Consensus 82 ~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~y~V~~~Ptl~i~~~G~~~ 161 (181)
+.++|...+...+++++|+||++||++|+.+.+.++++++++++++.++.+|+++++.++++|+|..+|+++++++|+++
T Consensus 2 ~~~~~~~~~~~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~~~ 81 (101)
T TIGR01068 2 TDANFDETIASSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDIAAKYGIRSIPTLLLFKNGKEV 81 (101)
T ss_pred CHHHHHHHHhhcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCcCCEEEEEeCCcEe
Confidence 45677777776678999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred EEEeCCCCHHHHHHHHHhhC
Q 030222 162 DTVIGAVPKSTLTTSIEKFL 181 (181)
Q Consensus 162 ~~~~G~~~~~~l~~~i~~~L 181 (181)
.++.|..+.+.+.++|++.|
T Consensus 82 ~~~~g~~~~~~l~~~l~~~~ 101 (101)
T TIGR01068 82 DRSVGALPKAALKQLINKNL 101 (101)
T ss_pred eeecCCCCHHHHHHHHHhhC
Confidence 99999999999999999875
No 24
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.88 E-value=3.6e-22 Score=137.25 Aligned_cols=97 Identities=27% Similarity=0.651 Sum_probs=88.1
Q ss_pred eeeccchhhHHHhhCCCcEEEEEECCCChhhhhhhhhHHHHHHHhcC---ceEEEEEeCCCChHHHHHcCCCcccEEEEE
Q 030222 79 TAVEDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVG---KLKCYKVNTDESPSIATRYGIRSIPTVMIF 155 (181)
Q Consensus 79 ~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~la~~~~~---~v~~~~vd~d~~~~l~~~y~V~~~Ptl~i~ 155 (181)
..++.++|+..+.. + +++|+||++||++|+.+.|.++++++++.+ ++.++.+|++++.+++++|+|.++||++++
T Consensus 3 ~~l~~~~f~~~~~~-~-~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~ 80 (102)
T cd03005 3 LELTEDNFDHHIAE-G-NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRGYPTLLLF 80 (102)
T ss_pred eECCHHHHHHHhhc-C-CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCcCCEEEEE
Confidence 46778889987743 3 599999999999999999999999999976 699999999999999999999999999999
Q ss_pred eCCeEEEEEeCCCCHHHHHHHH
Q 030222 156 KNGEKKDTVIGAVPKSTLTTSI 177 (181)
Q Consensus 156 ~~G~~~~~~~G~~~~~~l~~~i 177 (181)
++|+.+.++.|..+.++|.+||
T Consensus 81 ~~g~~~~~~~G~~~~~~l~~~i 102 (102)
T cd03005 81 KDGEKVDKYKGTRDLDSLKEFV 102 (102)
T ss_pred eCCCeeeEeeCCCCHHHHHhhC
Confidence 9999999999999999888775
No 25
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.88 E-value=4.9e-22 Score=155.11 Aligned_cols=105 Identities=24% Similarity=0.501 Sum_probs=96.4
Q ss_pred cceeeeccchhhHHHhhC----CCcEEEEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccE
Q 030222 76 AQETAVEDATWQSLVLDS----GSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPT 151 (181)
Q Consensus 76 ~~~~~l~~~~~~~~~~~~----~~~vlV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~y~V~~~Pt 151 (181)
....++++++|++++... +++++|+||++||++|+.+.|.++++++++++.+.+..+|++++++++++|+|+++||
T Consensus 30 ~~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~~l~~~~~I~~~PT 109 (224)
T PTZ00443 30 NALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRALNLAKRFAIKGYPT 109 (224)
T ss_pred CCcEECCHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccHHHHHHcCCCcCCE
Confidence 356678899999987653 5799999999999999999999999999999889999999999999999999999999
Q ss_pred EEEEeCCeEEEEEeCCCCHHHHHHHHHhh
Q 030222 152 VMIFKNGEKKDTVIGAVPKSTLTTSIEKF 180 (181)
Q Consensus 152 l~i~~~G~~~~~~~G~~~~~~l~~~i~~~ 180 (181)
+++|++|+.+.+..|..+.++|.+|+++.
T Consensus 110 l~~f~~G~~v~~~~G~~s~e~L~~fi~~~ 138 (224)
T PTZ00443 110 LLLFDKGKMYQYEGGDRSTEKLAAFALGD 138 (224)
T ss_pred EEEEECCEEEEeeCCCCCHHHHHHHHHHH
Confidence 99999999998888999999999998764
No 26
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.88 E-value=8.3e-22 Score=135.69 Aligned_cols=99 Identities=30% Similarity=0.618 Sum_probs=90.9
Q ss_pred eeeccchhhHHHhhCCCcEEEEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEeCC
Q 030222 79 TAVEDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNG 158 (181)
Q Consensus 79 ~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~y~V~~~Ptl~i~~~G 158 (181)
..++..+|+..+.+.+++++|+||++||++|+.+.|.+.++++++.+++.++.+|++++++++++|+|+++|++++|++|
T Consensus 3 ~~l~~~~~~~~i~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~~~~~~ 82 (103)
T cd03001 3 VELTDSNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQSLAQQYGVRGFPTIKVFGAG 82 (103)
T ss_pred EEcCHHhHHHHHhcCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHHHHHHCCCCccCEEEEECCC
Confidence 45778899998887788899999999999999999999999999988899999999999999999999999999999888
Q ss_pred -eEEEEEeCCCCHHHHHHHH
Q 030222 159 -EKKDTVIGAVPKSTLTTSI 177 (181)
Q Consensus 159 -~~~~~~~G~~~~~~l~~~i 177 (181)
+....+.|..+.++|.+|+
T Consensus 83 ~~~~~~~~g~~~~~~l~~~~ 102 (103)
T cd03001 83 KNSPQDYQGGRTAKAIVSAA 102 (103)
T ss_pred CcceeecCCCCCHHHHHHHh
Confidence 5566888999999999886
No 27
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.88 E-value=7.2e-22 Score=144.57 Aligned_cols=98 Identities=27% Similarity=0.610 Sum_probs=87.1
Q ss_pred cchhhHHHhhCCCcEEEEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCCCC--hHHHHHcCCCcccEEEEE-eCCe
Q 030222 83 DATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDES--PSIATRYGIRSIPTVMIF-KNGE 159 (181)
Q Consensus 83 ~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~--~~l~~~y~V~~~Ptl~i~-~~G~ 159 (181)
..+|+. .+..+++++|+||++||++|+.+.|.+.++++++.+++.|+.||+|.. ..++++|+|+++||+++| ++|+
T Consensus 10 ~~~~~~-a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~G~ 88 (142)
T cd02950 10 STPPEV-ALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDREGN 88 (142)
T ss_pred cCCHHH-HHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCCCC
Confidence 445555 456789999999999999999999999999999987788999988865 578999999999999999 5899
Q ss_pred EEEEEeCCCCHHHHHHHHHhhC
Q 030222 160 KKDTVIGAVPKSTLTTSIEKFL 181 (181)
Q Consensus 160 ~~~~~~G~~~~~~l~~~i~~~L 181 (181)
++.++.|..+.++|.++|++++
T Consensus 89 ~v~~~~G~~~~~~l~~~l~~l~ 110 (142)
T cd02950 89 EEGQSIGLQPKQVLAQNLDALV 110 (142)
T ss_pred EEEEEeCCCCHHHHHHHHHHHH
Confidence 9999999999999999998864
No 28
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.87 E-value=9.2e-22 Score=134.91 Aligned_cols=100 Identities=29% Similarity=0.618 Sum_probs=91.2
Q ss_pred eccchhhHHHhhCCCcEEEEEECCCChhhhhhhhhHHHHHHHhcC--ceEEEEEeCCCChHHHHHcCCCcccEEEEEeCC
Q 030222 81 VEDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVG--KLKCYKVNTDESPSIATRYGIRSIPTVMIFKNG 158 (181)
Q Consensus 81 l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~la~~~~~--~v~~~~vd~d~~~~l~~~y~V~~~Ptl~i~~~G 158 (181)
++.++|+..+. ++++++|+||++||++|+.+.+.++++++.+.+ ++.++.+|++++++++++|+|+++|++++|++|
T Consensus 1 l~~~~~~~~~~-~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~~~~~~ 79 (102)
T TIGR01126 1 LTASNFDDIVL-SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSGFPTIKFFPKG 79 (102)
T ss_pred CchhhHHHHhc-cCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCcCCEEEEecCC
Confidence 35678888665 788999999999999999999999999999987 699999999999999999999999999999888
Q ss_pred eEEEEEeCCCCHHHHHHHHHhhC
Q 030222 159 EKKDTVIGAVPKSTLTTSIEKFL 181 (181)
Q Consensus 159 ~~~~~~~G~~~~~~l~~~i~~~L 181 (181)
+....+.|..+.++|..+|++.+
T Consensus 80 ~~~~~~~g~~~~~~l~~~i~~~~ 102 (102)
T TIGR01126 80 KKPVDYEGGRDLEAIVEFVNEKS 102 (102)
T ss_pred CcceeecCCCCHHHHHHHHHhcC
Confidence 77788999999999999999864
No 29
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.87 E-value=2.9e-21 Score=132.34 Aligned_cols=93 Identities=32% Similarity=0.567 Sum_probs=86.7
Q ss_pred hhHHHhhCCCcEEEEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEeCCeEEEEEe
Q 030222 86 WQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVI 165 (181)
Q Consensus 86 ~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~y~V~~~Ptl~i~~~G~~~~~~~ 165 (181)
.+..+.+.+++++++||++||++|+.+.|.++++++++.+++.++.+|.|+++++..+|+|.++||++++++|+++.++.
T Consensus 5 ~~~~~~~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~g~~v~~~~ 84 (97)
T cd02949 5 LRKLYHESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEIAEAAGIMGTPTVQFFKDKELVKEIS 84 (97)
T ss_pred HHHHHHhCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCCeeccEEEEEECCeEEEEEe
Confidence 34556678899999999999999999999999999999888999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHH
Q 030222 166 GAVPKSTLTTSIE 178 (181)
Q Consensus 166 G~~~~~~l~~~i~ 178 (181)
|..+.+++.++|+
T Consensus 85 g~~~~~~~~~~l~ 97 (97)
T cd02949 85 GVKMKSEYREFIE 97 (97)
T ss_pred CCccHHHHHHhhC
Confidence 9999999998874
No 30
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.87 E-value=1.4e-21 Score=137.61 Aligned_cols=90 Identities=24% Similarity=0.538 Sum_probs=81.1
Q ss_pred ceeeeccchhhHHHhhC--CCcEEEEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEE
Q 030222 77 QETAVEDATWQSLVLDS--GSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMI 154 (181)
Q Consensus 77 ~~~~l~~~~~~~~~~~~--~~~vlV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~y~V~~~Ptl~i 154 (181)
....++.++|.+.+... +++++|+||++||++|+.+.|.++++++++++ +.|++||++++ +++++|+|+++||+++
T Consensus 5 ~v~~i~~~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~-v~f~~vd~~~~-~l~~~~~i~~~Pt~~~ 82 (113)
T cd02957 5 EVREISSKEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYPE-TKFVKINAEKA-FLVNYLDIKVLPTLLV 82 (113)
T ss_pred eEEEEcHHHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCC-cEEEEEEchhh-HHHHhcCCCcCCEEEE
Confidence 34556778898888766 48999999999999999999999999999974 89999999999 9999999999999999
Q ss_pred EeCCeEEEEEeCCC
Q 030222 155 FKNGEKKDTVIGAV 168 (181)
Q Consensus 155 ~~~G~~~~~~~G~~ 168 (181)
|++|+.+.++.|..
T Consensus 83 f~~G~~v~~~~G~~ 96 (113)
T cd02957 83 YKNGELIDNIVGFE 96 (113)
T ss_pred EECCEEEEEEecHH
Confidence 99999999999853
No 31
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.86 E-value=3.7e-21 Score=132.52 Aligned_cols=98 Identities=22% Similarity=0.511 Sum_probs=87.7
Q ss_pred eeeccchhhHHHhhCCCcEEEEEECCCChhhhhhhhhHHHHHHHhc--CceEEEEEeCCC--ChHHHHHcCCCcccEEEE
Q 030222 79 TAVEDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYV--GKLKCYKVNTDE--SPSIATRYGIRSIPTVMI 154 (181)
Q Consensus 79 ~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~la~~~~--~~v~~~~vd~d~--~~~l~~~y~V~~~Ptl~i 154 (181)
..++..+|+..+ .++++++|+||++||++|+.+.|.++++++.+. +.+.++.+|+++ ++.++++|+|+++||+++
T Consensus 3 ~~l~~~~~~~~~-~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~~~ 81 (104)
T cd02997 3 VHLTDEDFRKFL-KKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPTFKY 81 (104)
T ss_pred EEechHhHHHHH-hhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccccEEEE
Confidence 456777888755 456699999999999999999999999999887 568899999998 999999999999999999
Q ss_pred EeCCeEEEEEeCCCCHHHHHHHH
Q 030222 155 FKNGEKKDTVIGAVPKSTLTTSI 177 (181)
Q Consensus 155 ~~~G~~~~~~~G~~~~~~l~~~i 177 (181)
|++|+++.++.|..+.+.+.+||
T Consensus 82 ~~~g~~~~~~~g~~~~~~l~~~l 104 (104)
T cd02997 82 FENGKFVEKYEGERTAEDIIEFM 104 (104)
T ss_pred EeCCCeeEEeCCCCCHHHHHhhC
Confidence 99999999999999999998875
No 32
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.86 E-value=6.3e-21 Score=130.10 Aligned_cols=94 Identities=27% Similarity=0.672 Sum_probs=83.8
Q ss_pred cchhhHHHhhC-CCcEEEEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEeCCeEE
Q 030222 83 DATWQSLVLDS-GSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKK 161 (181)
Q Consensus 83 ~~~~~~~~~~~-~~~vlV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~y~V~~~Ptl~i~~~G~~~ 161 (181)
.++|++++... +++++|+||++||++|+.+.+.++++++++..++.++.+|.+++++++++|+|+++||+++|++|+++
T Consensus 2 ~~~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~ 81 (97)
T cd02984 2 EEEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEISEKFEITAVPTFVFFRNGTIV 81 (97)
T ss_pred HHHHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHHHHHhcCCccccEEEEEECCEEE
Confidence 45677777666 68999999999999999999999999999766799999999999999999999999999999999999
Q ss_pred EEEeCCCCHHHHHHHH
Q 030222 162 DTVIGAVPKSTLTTSI 177 (181)
Q Consensus 162 ~~~~G~~~~~~l~~~i 177 (181)
.++.|. ..++|.+.|
T Consensus 82 ~~~~g~-~~~~l~~~~ 96 (97)
T cd02984 82 DRVSGA-DPKELAKKV 96 (97)
T ss_pred EEEeCC-CHHHHHHhh
Confidence 999996 556677665
No 33
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.86 E-value=8.1e-21 Score=132.51 Aligned_cols=96 Identities=19% Similarity=0.290 Sum_probs=81.5
Q ss_pred chhhHHHhhC-CCcEEEEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEeCCeEEE
Q 030222 84 ATWQSLVLDS-GSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKD 162 (181)
Q Consensus 84 ~~~~~~~~~~-~~~vlV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~y~V~~~Ptl~i~~~G~~~~ 162 (181)
++|++.+... +++|+|.||++||++|+.+.|.+++++++|++.+.|++||.|+.+++++.|+|++.||+++|++|+.+.
T Consensus 3 ~~~d~~i~~~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~dva~~y~I~amPtfvffkngkh~~ 82 (114)
T cd02986 3 KEVDQAIKSTAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPVYTQYFDISYIPSTIFFFNGQHMK 82 (114)
T ss_pred HHHHHHHHhcCCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccccHHHHHhcCceeCcEEEEEECCcEEE
Confidence 4566666554 889999999999999999999999999999866999999999999999999999999999999999886
Q ss_pred EEeCC----------CCHHHHHHHHHh
Q 030222 163 TVIGA----------VPKSTLTTSIEK 179 (181)
Q Consensus 163 ~~~G~----------~~~~~l~~~i~~ 179 (181)
.-.|. -+++++++.|+-
T Consensus 83 ~d~gt~~~~k~~~~~~~k~~~idi~e~ 109 (114)
T cd02986 83 VDYGSPDHTKFVGSFKTKQDFIDLIEV 109 (114)
T ss_pred EecCCCCCcEEEEEcCchhHHHHHHHH
Confidence 43332 235777777664
No 34
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.85 E-value=1.2e-20 Score=139.18 Aligned_cols=91 Identities=23% Similarity=0.447 Sum_probs=81.5
Q ss_pred cceeeeccchhhHHHhhC-CCcEEEEEECCCChhhhhhhhhHHHHHHHhcC-ceEEEEEeCCCChHHHHHcCCCc-----
Q 030222 76 AQETAVEDATWQSLVLDS-GSPVLVEFWAPWCGPCRMIHPIIDELSKQYVG-KLKCYKVNTDESPSIATRYGIRS----- 148 (181)
Q Consensus 76 ~~~~~l~~~~~~~~~~~~-~~~vlV~F~a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~d~~~~l~~~y~V~~----- 148 (181)
.....++.++|++.+... +++++|+||++||++|+.+.|.++++++++.+ ++.|+.||+|++++++++|+|.+
T Consensus 28 ~~v~~l~~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V~~~~~v~ 107 (152)
T cd02962 28 EHIKYFTPKTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRVSTSPLSK 107 (152)
T ss_pred CccEEcCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCceecCCcC
Confidence 344567788899876544 57999999999999999999999999999975 59999999999999999999988
Q ss_pred -ccEEEEEeCCeEEEEEeC
Q 030222 149 -IPTVMIFKNGEKKDTVIG 166 (181)
Q Consensus 149 -~Ptl~i~~~G~~~~~~~G 166 (181)
+||+++|++|+.+.++.|
T Consensus 108 ~~PT~ilf~~Gk~v~r~~G 126 (152)
T cd02962 108 QLPTIILFQGGKEVARRPY 126 (152)
T ss_pred CCCEEEEEECCEEEEEEec
Confidence 999999999999999997
No 35
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.85 E-value=1.4e-20 Score=132.58 Aligned_cols=88 Identities=28% Similarity=0.552 Sum_probs=78.2
Q ss_pred eeecc-chhhHHHhhCCCcEEEEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEeC
Q 030222 79 TAVED-ATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKN 157 (181)
Q Consensus 79 ~~l~~-~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~y~V~~~Ptl~i~~~ 157 (181)
..++. ++|.+.+ .++++++|+||++||++|+.+.|.++++++++++ ++|+.||.+++++++++|+|+++||+++|++
T Consensus 7 ~~i~~~~~~~~~i-~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~-i~f~~Vd~~~~~~l~~~~~v~~vPt~l~fk~ 84 (113)
T cd02989 7 REVSDEKEFFEIV-KSSERVVCHFYHPEFFRCKIMDKHLEILAKKHLE-TKFIKVNAEKAPFLVEKLNIKVLPTVILFKN 84 (113)
T ss_pred EEeCCHHHHHHHH-hCCCcEEEEEECCCCccHHHHHHHHHHHHHHcCC-CEEEEEEcccCHHHHHHCCCccCCEEEEEEC
Confidence 34444 7787765 4567999999999999999999999999999975 8999999999999999999999999999999
Q ss_pred CeEEEEEeCCC
Q 030222 158 GEKKDTVIGAV 168 (181)
Q Consensus 158 G~~~~~~~G~~ 168 (181)
|++++++.|..
T Consensus 85 G~~v~~~~g~~ 95 (113)
T cd02989 85 GKTVDRIVGFE 95 (113)
T ss_pred CEEEEEEECcc
Confidence 99999888753
No 36
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.85 E-value=4.9e-21 Score=132.62 Aligned_cols=94 Identities=19% Similarity=0.438 Sum_probs=82.8
Q ss_pred chhhHHHhhCCCcEEEEEECCCChhhhhhhhhH---HHHHHHhcCceEEEEEeCCC----ChHHHHHcCCCcccEEEEEe
Q 030222 84 ATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPII---DELSKQYVGKLKCYKVNTDE----SPSIATRYGIRSIPTVMIFK 156 (181)
Q Consensus 84 ~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l---~~la~~~~~~v~~~~vd~d~----~~~l~~~y~V~~~Ptl~i~~ 156 (181)
+.|.+ ..+++++++|+||++||++|+.+.+.+ .++++.+.+++.++.+|.++ .++++++|+|.++||+++|+
T Consensus 2 ~~~~~-~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~~~ 80 (104)
T cd02953 2 AALAQ-ALAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTYLFYG 80 (104)
T ss_pred HHHHH-HHHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEEEC
Confidence 34555 446789999999999999999999988 67888888789999999987 57899999999999999997
Q ss_pred --CCeEEEEEeCCCCHHHHHHHHH
Q 030222 157 --NGEKKDTVIGAVPKSTLTTSIE 178 (181)
Q Consensus 157 --~G~~~~~~~G~~~~~~l~~~i~ 178 (181)
+|+++.++.|..+.++|.++|+
T Consensus 81 ~~~g~~~~~~~G~~~~~~l~~~l~ 104 (104)
T cd02953 81 PGGEPEPLRLPGFLTADEFLEALE 104 (104)
T ss_pred CCCCCCCcccccccCHHHHHHHhC
Confidence 7999999999999999998874
No 37
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.85 E-value=1.1e-20 Score=130.15 Aligned_cols=99 Identities=29% Similarity=0.615 Sum_probs=88.8
Q ss_pred eeeeccchhhHHHhhCCCcEEEEEECCCChhhhhhhhhHHHHHHHhcC--ceEEEEEeCCCChHHHHHcCCCcccEEEEE
Q 030222 78 ETAVEDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVG--KLKCYKVNTDESPSIATRYGIRSIPTVMIF 155 (181)
Q Consensus 78 ~~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~la~~~~~--~v~~~~vd~d~~~~l~~~y~V~~~Ptl~i~ 155 (181)
...++.++|++.+...+++++|+||++||++|+.+.|.++++++.+++ ++.++.+|++++ +++..+++.++||+++|
T Consensus 2 v~~l~~~~f~~~i~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~~~~Pt~~~~ 80 (104)
T cd02995 2 VKVVVGKNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN-DVPSEFVVDGFPTILFF 80 (104)
T ss_pred eEEEchhhhHHHHhCCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch-hhhhhccCCCCCEEEEE
Confidence 346788899998888889999999999999999999999999999876 589999999987 68899999999999999
Q ss_pred eCCe--EEEEEeCCCCHHHHHHHH
Q 030222 156 KNGE--KKDTVIGAVPKSTLTTSI 177 (181)
Q Consensus 156 ~~G~--~~~~~~G~~~~~~l~~~i 177 (181)
++|+ ...++.|..+.+.|.+||
T Consensus 81 ~~~~~~~~~~~~g~~~~~~l~~fi 104 (104)
T cd02995 81 PAGDKSNPIKYEGDRTLEDLIKFI 104 (104)
T ss_pred cCCCcCCceEccCCcCHHHHHhhC
Confidence 9887 567899999999998875
No 38
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.85 E-value=1.7e-20 Score=130.05 Aligned_cols=95 Identities=25% Similarity=0.573 Sum_probs=82.9
Q ss_pred cchhhHHHhhCCCcEEEEEECCCChhhhhhhhhHHHHHHHhcC---ceEEEEEeCCCChHHHHHcCCCcccEEEEEeCCe
Q 030222 83 DATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVG---KLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGE 159 (181)
Q Consensus 83 ~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~la~~~~~---~v~~~~vd~d~~~~l~~~y~V~~~Ptl~i~~~G~ 159 (181)
+++|+. + .++++++|+||++||++|+.+.|.++++++++.+ ++.+..+|++.+++++++|+|+++||+++|++|.
T Consensus 6 ~~~~~~-~-~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l~~~~~ 83 (104)
T cd03000 6 DDSFKD-V-RKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIKLLKGDL 83 (104)
T ss_pred hhhhhh-h-ccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCccccEEEEEcCCC
Confidence 356665 3 3467999999999999999999999999999843 4889999999999999999999999999997774
Q ss_pred EEEEEeCCCCHHHHHHHHHhh
Q 030222 160 KKDTVIGAVPKSTLTTSIEKF 180 (181)
Q Consensus 160 ~~~~~~G~~~~~~l~~~i~~~ 180 (181)
...+.|..+.+.|.+++++.
T Consensus 84 -~~~~~G~~~~~~l~~~~~~~ 103 (104)
T cd03000 84 -AYNYRGPRTKDDIVEFANRV 103 (104)
T ss_pred -ceeecCCCCHHHHHHHHHhh
Confidence 46789999999999999874
No 39
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.85 E-value=1.1e-20 Score=130.26 Aligned_cols=99 Identities=29% Similarity=0.616 Sum_probs=88.4
Q ss_pred eeeccchhhHHHhhCCCcEEEEEECCCChhhhhhhhhHHHHHHHhc--CceEEEEEeCCC-ChHHHHHcCCCcccEEEEE
Q 030222 79 TAVEDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYV--GKLKCYKVNTDE-SPSIATRYGIRSIPTVMIF 155 (181)
Q Consensus 79 ~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~la~~~~--~~v~~~~vd~d~-~~~l~~~y~V~~~Ptl~i~ 155 (181)
..++.++|+..+...+++++|+||++||++|+.+.|.+.++++++. +++.++.+|+++ +++++++|+|.++|++++|
T Consensus 3 ~~l~~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P~~~~~ 82 (105)
T cd02998 3 VELTDSNFDKVVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFPTLKFF 82 (105)
T ss_pred EEcchhcHHHHhcCCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCcCEEEEE
Confidence 3567788988777677899999999999999999999999999987 469999999999 9999999999999999999
Q ss_pred eCC-eEEEEEeCCCCHHHHHHHH
Q 030222 156 KNG-EKKDTVIGAVPKSTLTTSI 177 (181)
Q Consensus 156 ~~G-~~~~~~~G~~~~~~l~~~i 177 (181)
++| +....+.|..+.++|.+||
T Consensus 83 ~~~~~~~~~~~g~~~~~~l~~~i 105 (105)
T cd02998 83 PKGSTEPVKYEGGRDLEDLVKFV 105 (105)
T ss_pred eCCCCCccccCCccCHHHHHhhC
Confidence 766 6677888999999998875
No 40
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.83 E-value=4.2e-20 Score=130.22 Aligned_cols=89 Identities=24% Similarity=0.385 Sum_probs=80.3
Q ss_pred hCCCcEEEEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEeCCeEEE--EEeCCCC
Q 030222 92 DSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKD--TVIGAVP 169 (181)
Q Consensus 92 ~~~~~vlV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~y~V~~~Ptl~i~~~G~~~~--~~~G~~~ 169 (181)
..+..++|+||++||++|+.+.|.++++++++ +++.+..+|.|++++++++|+|+++||+++|++|+... ++.|..+
T Consensus 20 ~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~~i~~~~vd~d~~~~l~~~~~v~~vPt~~i~~~g~~~~~~~~~G~~~ 98 (113)
T cd02975 20 KNPVDLVVFSSKEGCQYCEVTKQLLEELSELS-DKLKLEIYDFDEDKEKAEKYGVERVPTTIFLQDGGKDGGIRYYGLPA 98 (113)
T ss_pred CCCeEEEEEeCCCCCCChHHHHHHHHHHHHhc-CceEEEEEeCCcCHHHHHHcCCCcCCEEEEEeCCeecceEEEEecCc
Confidence 34667999999999999999999999999988 57999999999999999999999999999999876554 7889999
Q ss_pred HHHHHHHHHhhC
Q 030222 170 KSTLTTSIEKFL 181 (181)
Q Consensus 170 ~~~l~~~i~~~L 181 (181)
..++.++|+.++
T Consensus 99 ~~el~~~i~~i~ 110 (113)
T cd02975 99 GYEFASLIEDIV 110 (113)
T ss_pred hHHHHHHHHHHH
Confidence 999999998764
No 41
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.83 E-value=9.3e-20 Score=137.71 Aligned_cols=103 Identities=14% Similarity=0.332 Sum_probs=87.9
Q ss_pred ccceeeecc-chhhHHHhhCC--CcEEEEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccE
Q 030222 75 EAQETAVED-ATWQSLVLDSG--SPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPT 151 (181)
Q Consensus 75 ~~~~~~l~~-~~~~~~~~~~~--~~vlV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~y~V~~~Pt 151 (181)
.+....++. ++|...+...+ .+|+|+||++||++|+.+.|.|.+++++|+ .++|++||+++. +++.+|+|+++||
T Consensus 61 ~g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~-~vkF~kVd~d~~-~l~~~f~v~~vPT 138 (175)
T cd02987 61 FGKVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYP-AVKFCKIRASAT-GASDEFDTDALPA 138 (175)
T ss_pred CCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCC-CeEEEEEeccch-hhHHhCCCCCCCE
Confidence 445556666 88998887654 499999999999999999999999999997 599999999988 8999999999999
Q ss_pred EEEEeCCeEEEEEeCC-------CCHHHHHHHHHh
Q 030222 152 VMIFKNGEKKDTVIGA-------VPKSTLTTSIEK 179 (181)
Q Consensus 152 l~i~~~G~~~~~~~G~-------~~~~~l~~~i~~ 179 (181)
|++|++|+.+.++.|. .+.+.|+.+|.+
T Consensus 139 lllyk~G~~v~~~vG~~~~~g~~f~~~~le~~L~~ 173 (175)
T cd02987 139 LLVYKGGELIGNFVRVTEDLGEDFDAEDLESFLVE 173 (175)
T ss_pred EEEEECCEEEEEEechHHhcCCCCCHHHHHHHHHh
Confidence 9999999999988875 335666666654
No 42
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.83 E-value=6.3e-20 Score=128.35 Aligned_cols=100 Identities=22% Similarity=0.425 Sum_probs=84.8
Q ss_pred eeeeccchhhHHHh--hCCCcEEEEEECCCChhhhhhhhhHHHHHHHhcC-ceEEEEEeCCC-ChHHHH-HcCCCcccEE
Q 030222 78 ETAVEDATWQSLVL--DSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVG-KLKCYKVNTDE-SPSIAT-RYGIRSIPTV 152 (181)
Q Consensus 78 ~~~l~~~~~~~~~~--~~~~~vlV~F~a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~d~-~~~l~~-~y~V~~~Ptl 152 (181)
+.+++.++|+.++. .++++++|+||++||++|+.+.|.+.++++++.+ ++.++.||+|. +..++. .|+|+++||+
T Consensus 3 v~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v~~~Pti 82 (109)
T cd02993 3 VVTLSRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQLKSFPTI 82 (109)
T ss_pred ceeccHHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCCCcCCEE
Confidence 34577789998875 4588999999999999999999999999999986 48999999998 577876 5999999999
Q ss_pred EEEeCC-eEEEEEeCC-CCHHHHHHHH
Q 030222 153 MIFKNG-EKKDTVIGA-VPKSTLTTSI 177 (181)
Q Consensus 153 ~i~~~G-~~~~~~~G~-~~~~~l~~~i 177 (181)
++|++| .....|.|. ++.+.|..||
T Consensus 83 ~~f~~~~~~~~~y~g~~~~~~~l~~f~ 109 (109)
T cd02993 83 LFFPKNSRQPIKYPSEQRDVDSLLMFV 109 (109)
T ss_pred EEEcCCCCCceeccCCCCCHHHHHhhC
Confidence 999755 466678884 7888888775
No 43
>PTZ00051 thioredoxin; Provisional
Probab=99.82 E-value=2e-19 Score=122.97 Aligned_cols=90 Identities=40% Similarity=0.759 Sum_probs=79.6
Q ss_pred ccchhhHHHhhCCCcEEEEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEeCCeEE
Q 030222 82 EDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKK 161 (181)
Q Consensus 82 ~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~y~V~~~Ptl~i~~~G~~~ 161 (181)
+.++|.. +.+.+++++|+||++||++|+.+.+.++++++++++ +.++.+|.+++.+++++|+|+++||++++++|+++
T Consensus 7 ~~~~~~~-~~~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~-~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~ 84 (98)
T PTZ00051 7 SQAEFES-TLSQNELVIVDFYAEWCGPCKRIAPFYEECSKEYTK-MVFVKVDVDELSEVAEKENITSMPTFKVFKNGSVV 84 (98)
T ss_pred CHHHHHH-HHhcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCC-cEEEEEECcchHHHHHHCCCceeeEEEEEeCCeEE
Confidence 3556666 456788999999999999999999999999999874 89999999999999999999999999999999999
Q ss_pred EEEeCCCCHHHHH
Q 030222 162 DTVIGAVPKSTLT 174 (181)
Q Consensus 162 ~~~~G~~~~~~l~ 174 (181)
.++.|. ..++|.
T Consensus 85 ~~~~G~-~~~~~~ 96 (98)
T PTZ00051 85 DTLLGA-NDEALK 96 (98)
T ss_pred EEEeCC-CHHHhh
Confidence 999996 555554
No 44
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.82 E-value=1e-19 Score=123.55 Aligned_cols=97 Identities=34% Similarity=0.682 Sum_probs=85.5
Q ss_pred eeccchhhHHHhhCCCcEEEEEECCCChhhhhhhhhHHHHHHHh--cCceEEEEEeCCCChHHHHHcCCCcccEEEEEeC
Q 030222 80 AVEDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQY--VGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKN 157 (181)
Q Consensus 80 ~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~la~~~--~~~v~~~~vd~d~~~~l~~~y~V~~~Ptl~i~~~ 157 (181)
.++..+|.+.+.+ +++++|+||++||++|+.+.+.++++++.+ .+++.++.+|+++++.++++|+|+++||++++++
T Consensus 2 ~l~~~~~~~~i~~-~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~ 80 (101)
T cd02961 2 ELTDDNFDELVKD-SKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRGYPTIKLFPN 80 (101)
T ss_pred cccHHHHHHHHhC-CCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCCCCEEEEEcC
Confidence 3566788875554 449999999999999999999999999999 5679999999999999999999999999999987
Q ss_pred C-eEEEEEeCCCCHHHHHHHH
Q 030222 158 G-EKKDTVIGAVPKSTLTTSI 177 (181)
Q Consensus 158 G-~~~~~~~G~~~~~~l~~~i 177 (181)
| +...++.|..+.+++.+||
T Consensus 81 ~~~~~~~~~g~~~~~~i~~~~ 101 (101)
T cd02961 81 GSKEPVKYEGPRTLESLVEFI 101 (101)
T ss_pred CCcccccCCCCcCHHHHHhhC
Confidence 7 7888899998898888764
No 45
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.81 E-value=2.4e-19 Score=128.11 Aligned_cols=92 Identities=21% Similarity=0.372 Sum_probs=80.2
Q ss_pred HhhCC-CcEEEEEECCCChhhhhhhhhHH---HHHHHhcCceEEEEEeCCCC-------------hHHHHHcCCCcccEE
Q 030222 90 VLDSG-SPVLVEFWAPWCGPCRMIHPIID---ELSKQYVGKLKCYKVNTDES-------------PSIATRYGIRSIPTV 152 (181)
Q Consensus 90 ~~~~~-~~vlV~F~a~wC~~C~~~~p~l~---~la~~~~~~v~~~~vd~d~~-------------~~l~~~y~V~~~Ptl 152 (181)
.++++ ++++|+||++||++|+.+++.+. ++.+.+.+++.++.+|.|.+ .+++.+|+|+++||+
T Consensus 9 a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt~ 88 (125)
T cd02951 9 AAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRVRFTPTV 88 (125)
T ss_pred HHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCCccccEE
Confidence 45667 99999999999999999999884 66777766788999999865 689999999999998
Q ss_pred EEEe-C-CeEEEEEeCCCCHHHHHHHHHhhC
Q 030222 153 MIFK-N-GEKKDTVIGAVPKSTLTTSIEKFL 181 (181)
Q Consensus 153 ~i~~-~-G~~~~~~~G~~~~~~l~~~i~~~L 181 (181)
++++ + |+++.++.|..+.+.+.++|++++
T Consensus 89 ~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~~ 119 (125)
T cd02951 89 IFLDPEGGKEIARLPGYLPPDEFLAYLEYVQ 119 (125)
T ss_pred EEEcCCCCceeEEecCCCCHHHHHHHHHHHH
Confidence 8886 4 699999999999999999998764
No 46
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=9.8e-20 Score=140.97 Aligned_cols=100 Identities=36% Similarity=0.702 Sum_probs=89.9
Q ss_pred eeccchhhHHHhhC-CCcEEEEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEeCC
Q 030222 80 AVEDATWQSLVLDS-GSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNG 158 (181)
Q Consensus 80 ~l~~~~~~~~~~~~-~~~vlV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~y~V~~~Ptl~i~~~G 158 (181)
+.++.+|+..+... ++.|+|+|++.||+||+++.|.+..++.+|++ ..|++||+|+....+..|||.+.|||++|+||
T Consensus 6 v~~d~df~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~-aVFlkVdVd~c~~taa~~gV~amPTFiff~ng 84 (288)
T KOG0908|consen 6 VNSDSDFQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPG-AVFLKVDVDECRGTAATNGVNAMPTFIFFRNG 84 (288)
T ss_pred ecCcHHHHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCcc-cEEEEEeHHHhhchhhhcCcccCceEEEEecC
Confidence 34567788776655 57999999999999999999999999999985 88999999999999999999999999999999
Q ss_pred eEEEEEeCCCCHHHHHHHHHhhC
Q 030222 159 EKKDTVIGAVPKSTLTTSIEKFL 181 (181)
Q Consensus 159 ~~~~~~~G~~~~~~l~~~i~~~L 181 (181)
..++.+.|+ +...|++.|.+++
T Consensus 85 ~kid~~qGA-d~~gLe~kv~~~~ 106 (288)
T KOG0908|consen 85 VKIDQIQGA-DASGLEEKVAKYA 106 (288)
T ss_pred eEeeeecCC-CHHHHHHHHHHHh
Confidence 999999997 7777998888763
No 47
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=1.6e-19 Score=153.32 Aligned_cols=107 Identities=26% Similarity=0.545 Sum_probs=97.1
Q ss_pred ccccceeeeccchhhHHHhhCCCcEEEEEECCCChhhhhhhhhHHHHHHHhcC---ceEEEEEeCCCChHHHHHcCCCcc
Q 030222 73 VCEAQETAVEDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVG---KLKCYKVNTDESPSIATRYGIRSI 149 (181)
Q Consensus 73 ~~~~~~~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~la~~~~~---~v~~~~vd~d~~~~l~~~y~V~~~ 149 (181)
.....+.+++.++|+..+ .....++|.||||||+||+.++|.+.+.+..+.. .+.+++||+.++.+++.+|+|+++
T Consensus 22 ~~~~~Vl~Lt~dnf~~~i-~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~~~~~~y~v~gy 100 (493)
T KOG0190|consen 22 KAEEDVLVLTKDNFKETI-NGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEESDLASKYEVRGY 100 (493)
T ss_pred CcccceEEEecccHHHHh-ccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhhhhHhhhcCCCC
Confidence 346677889999999854 5667899999999999999999999999998875 589999999999999999999999
Q ss_pred cEEEEEeCCeEEEEEeCCCCHHHHHHHHHhh
Q 030222 150 PTVMIFKNGEKKDTVIGAVPKSTLTTSIEKF 180 (181)
Q Consensus 150 Ptl~i~~~G~~~~~~~G~~~~~~l~~~i~~~ 180 (181)
||+.+|+||+....|.|.+..+.+..||.+.
T Consensus 101 PTlkiFrnG~~~~~Y~G~r~adgIv~wl~kq 131 (493)
T KOG0190|consen 101 PTLKIFRNGRSAQDYNGPREADGIVKWLKKQ 131 (493)
T ss_pred CeEEEEecCCcceeccCcccHHHHHHHHHhc
Confidence 9999999999878899999999999999874
No 48
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.80 E-value=1e-18 Score=124.67 Aligned_cols=96 Identities=15% Similarity=0.241 Sum_probs=78.3
Q ss_pred eeccchhhHHHhhCCCcEEEEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCCCCh-----------HHHHHcC---
Q 030222 80 AVEDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESP-----------SIATRYG--- 145 (181)
Q Consensus 80 ~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~-----------~l~~~y~--- 145 (181)
.++.+++.+.+ .+++.++|+||++|||+|+++.|.|.+++++. ++.++.+|+|.++ ++.++|+
T Consensus 10 ~it~~~~~~~i-~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~--~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~ 86 (122)
T TIGR01295 10 VTTVVRALEAL-DKKETATFFIGRKTCPYCRKFSGTLSGVVAQT--KAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPT 86 (122)
T ss_pred ecCHHHHHHHH-HcCCcEEEEEECCCChhHHHHhHHHHHHHHhc--CCcEEEEECCCccCcCcccHHHHHHHHHHcCCcc
Confidence 35566777744 46778999999999999999999999999983 4778888888543 4556765
Q ss_pred -CCcccEEEEEeCCeEEEEEeC-CCCHHHHHHHHH
Q 030222 146 -IRSIPTVMIFKNGEKKDTVIG-AVPKSTLTTSIE 178 (181)
Q Consensus 146 -V~~~Ptl~i~~~G~~~~~~~G-~~~~~~l~~~i~ 178 (181)
|.++||+++|++|+.+.+..| ..+.++|.+++.
T Consensus 87 ~i~~~PT~v~~k~Gk~v~~~~G~~~~~~~l~~~~~ 121 (122)
T TIGR01295 87 SFMGTPTFVHITDGKQVSVRCGSSTTAQELQDIAA 121 (122)
T ss_pred cCCCCCEEEEEeCCeEEEEEeCCCCCHHHHHHHhh
Confidence 556999999999999999999 567888988764
No 49
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.80 E-value=1.8e-18 Score=115.29 Aligned_cols=92 Identities=49% Similarity=1.020 Sum_probs=82.4
Q ss_pred hhhHHHhhCCCcEEEEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEeCCeEEEEE
Q 030222 85 TWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTV 164 (181)
Q Consensus 85 ~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~y~V~~~Ptl~i~~~G~~~~~~ 164 (181)
+|+..+. .+++++|+||++||++|+.+.+.+++++++ .+++.++.+|++.+++++++|++.++|+++++++|+.+..+
T Consensus 2 ~~~~~~~-~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~~~~~~ 79 (93)
T cd02947 2 EFEELIK-SAKPVVVDFWAPWCGPCKAIAPVLEELAEE-YPKVKFVKVDVDENPELAEEYGVRSIPTFLFFKNGKEVDRV 79 (93)
T ss_pred chHHHHh-cCCcEEEEEECCCChhHHHhhHHHHHHHHH-CCCceEEEEECCCChhHHHhcCcccccEEEEEECCEEEEEE
Confidence 4555443 348999999999999999999999999988 55799999999999999999999999999999999999999
Q ss_pred eCCCCHHHHHHHHH
Q 030222 165 IGAVPKSTLTTSIE 178 (181)
Q Consensus 165 ~G~~~~~~l~~~i~ 178 (181)
.|..+.+.|.++|+
T Consensus 80 ~g~~~~~~l~~~i~ 93 (93)
T cd02947 80 VGADPKEELEEFLE 93 (93)
T ss_pred ecCCCHHHHHHHhC
Confidence 99999899998874
No 50
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.78 E-value=2.1e-18 Score=131.99 Aligned_cols=102 Identities=17% Similarity=0.344 Sum_probs=86.8
Q ss_pred cccceeeeccchhhHHHhhCC--CcEEEEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccE
Q 030222 74 CEAQETAVEDATWQSLVLDSG--SPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPT 151 (181)
Q Consensus 74 ~~~~~~~l~~~~~~~~~~~~~--~~vlV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~y~V~~~Pt 151 (181)
..+....++..+|...+...+ .+|+|+||++||++|+.+.|.|.+++++|+ .++|++||.+.. ..+|+|+++||
T Consensus 80 ~~G~v~eis~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~-~vkFvkI~ad~~---~~~~~i~~lPT 155 (192)
T cd02988 80 KFGEVYEISKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFP-DTKFVKIISTQC---IPNYPDKNLPT 155 (192)
T ss_pred CCCeEEEeCHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCC-CCEEEEEEhHHh---HhhCCCCCCCE
Confidence 356677788889988776654 489999999999999999999999999997 599999999853 68999999999
Q ss_pred EEEEeCCeEEEEEeCC-------CCHHHHHHHHHh
Q 030222 152 VMIFKNGEKKDTVIGA-------VPKSTLTTSIEK 179 (181)
Q Consensus 152 l~i~~~G~~~~~~~G~-------~~~~~l~~~i~~ 179 (181)
|++|++|+.+.++.|. .+.+.|+.+|.+
T Consensus 156 lliyk~G~~v~~ivG~~~~gg~~~~~~~lE~~L~~ 190 (192)
T cd02988 156 ILVYRNGDIVKQFIGLLEFGGMNTTMEDLEWLLVQ 190 (192)
T ss_pred EEEEECCEEEEEEeCchhhCCCCCCHHHHHHHHHh
Confidence 9999999999999985 445667766654
No 51
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.78 E-value=3.7e-18 Score=112.85 Aligned_cols=81 Identities=31% Similarity=0.534 Sum_probs=74.5
Q ss_pred EEEEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEeCCeEEEEEeCCCCHHHHHHH
Q 030222 97 VLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTS 176 (181)
Q Consensus 97 vlV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~y~V~~~Ptl~i~~~G~~~~~~~G~~~~~~l~~~ 176 (181)
.+..||++||++|+.+.+.+++++++++.++.+..||.+++++++++||++++||+++ +|+. ++.|..+.+++.++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~vPt~~~--~g~~--~~~G~~~~~~l~~~ 77 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQKAMEYGIMAVPAIVI--NGDV--EFIGAPTKEELVEA 77 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHHHHHcCCccCCEEEE--CCEE--EEecCCCHHHHHHH
Confidence 4778999999999999999999999998779999999999999999999999999886 7763 78899999999999
Q ss_pred HHhhC
Q 030222 177 IEKFL 181 (181)
Q Consensus 177 i~~~L 181 (181)
|++.|
T Consensus 78 l~~~~ 82 (82)
T TIGR00411 78 IKKRL 82 (82)
T ss_pred HHhhC
Confidence 99876
No 52
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.78 E-value=2.5e-18 Score=121.27 Aligned_cols=84 Identities=29% Similarity=0.564 Sum_probs=73.8
Q ss_pred eeeeccchhhHHHhhCCCcEEEEEECCCChhhhhhhhhHHHHHHHhcC---ceEEEEEeCC--CChHHHHHcCCCcccEE
Q 030222 78 ETAVEDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVG---KLKCYKVNTD--ESPSIATRYGIRSIPTV 152 (181)
Q Consensus 78 ~~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~la~~~~~---~v~~~~vd~d--~~~~l~~~y~V~~~Ptl 152 (181)
...++..+|+..+...+++++|+||++||++|+.+.|.++++++++.+ .+.+..+|++ .+++++++|+|+++||+
T Consensus 3 v~~l~~~~f~~~i~~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~Pt~ 82 (114)
T cd02992 3 VIVLDAASFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGYPTL 82 (114)
T ss_pred eEECCHHhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCCCEE
Confidence 456788899998888888999999999999999999999999998753 4888999975 46789999999999999
Q ss_pred EEEeCCeEE
Q 030222 153 MIFKNGEKK 161 (181)
Q Consensus 153 ~i~~~G~~~ 161 (181)
++|++|+..
T Consensus 83 ~lf~~~~~~ 91 (114)
T cd02992 83 RYFPPFSKE 91 (114)
T ss_pred EEECCCCcc
Confidence 999988743
No 53
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.77 E-value=3.5e-18 Score=145.51 Aligned_cols=106 Identities=19% Similarity=0.348 Sum_probs=89.4
Q ss_pred ccceeeeccchhhHHHh--hCCCcEEEEEECCCChhhhhhhhhHHHHHHHhcCc-eEEEEEeCCCCh-HHH-HHcCCCcc
Q 030222 75 EAQETAVEDATWQSLVL--DSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGK-LKCYKVNTDESP-SIA-TRYGIRSI 149 (181)
Q Consensus 75 ~~~~~~l~~~~~~~~~~--~~~~~vlV~F~a~wC~~C~~~~p~l~~la~~~~~~-v~~~~vd~d~~~-~l~-~~y~V~~~ 149 (181)
...+..++..+|+.++. ..+++++|+||++||++|+.+.|.++++++++.++ +.|+.||+|.+. .++ ++|+|+++
T Consensus 350 ~~~Vv~L~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~I~~~ 429 (463)
T TIGR00424 350 SNNVVSLSRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSF 429 (463)
T ss_pred CCCeEECCHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcCCCcc
Confidence 44566788999999874 46889999999999999999999999999999864 899999999764 454 78999999
Q ss_pred cEEEEEeCCeE-EEEEe-CCCCHHHHHHHHHhh
Q 030222 150 PTVMIFKNGEK-KDTVI-GAVPKSTLTTSIEKF 180 (181)
Q Consensus 150 Ptl~i~~~G~~-~~~~~-G~~~~~~l~~~i~~~ 180 (181)
||+++|++|+. ...|. |.++.+.|..||+.+
T Consensus 430 PTii~Fk~g~~~~~~Y~~g~R~~e~L~~Fv~~~ 462 (463)
T TIGR00424 430 PTILFFPKHSSRPIKYPSEKRDVDSLMSFVNLL 462 (463)
T ss_pred ceEEEEECCCCCceeCCCCCCCHHHHHHHHHhh
Confidence 99999998852 33465 589999999999864
No 54
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.77 E-value=4.2e-18 Score=145.19 Aligned_cols=103 Identities=28% Similarity=0.569 Sum_probs=92.6
Q ss_pred eeeeccchhhHHHhhCCCcEEEEEECCCChhhhhhhhhHHHHHHHhcC---ceEEEEEeCCCChHHHHHcCCCcccEEEE
Q 030222 78 ETAVEDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVG---KLKCYKVNTDESPSIATRYGIRSIPTVMI 154 (181)
Q Consensus 78 ~~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~la~~~~~---~v~~~~vd~d~~~~l~~~y~V~~~Ptl~i 154 (181)
...++.++|+.++ .++++++|+||++||++|+.+.|.+.++++.+.+ ++.++.||++++++++++|+|.++||+++
T Consensus 3 v~~l~~~~~~~~i-~~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~ 81 (462)
T TIGR01130 3 VLVLTKDNFDDFI-KSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQKYGVSGYPTLKI 81 (462)
T ss_pred ceECCHHHHHHHH-hcCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHHHHhCCCccccEEEE
Confidence 3467888998865 5677999999999999999999999999988764 38999999999999999999999999999
Q ss_pred EeCCeE-EEEEeCCCCHHHHHHHHHhhC
Q 030222 155 FKNGEK-KDTVIGAVPKSTLTTSIEKFL 181 (181)
Q Consensus 155 ~~~G~~-~~~~~G~~~~~~l~~~i~~~L 181 (181)
|++|+. +..+.|..+.+.|.+||++.+
T Consensus 82 ~~~g~~~~~~~~g~~~~~~l~~~i~~~~ 109 (462)
T TIGR01130 82 FRNGEDSVSDYNGPRDADGIVKYMKKQS 109 (462)
T ss_pred EeCCccceeEecCCCCHHHHHHHHHHhc
Confidence 999998 788999999999999998764
No 55
>PTZ00102 disulphide isomerase; Provisional
Probab=99.76 E-value=7e-18 Score=144.95 Aligned_cols=105 Identities=25% Similarity=0.527 Sum_probs=94.5
Q ss_pred cceeeeccchhhHHHhhCCCcEEEEEECCCChhhhhhhhhHHHHHHHhcC--ceEEEEEeCCCChHHHHHcCCCcccEEE
Q 030222 76 AQETAVEDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVG--KLKCYKVNTDESPSIATRYGIRSIPTVM 153 (181)
Q Consensus 76 ~~~~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~la~~~~~--~v~~~~vd~d~~~~l~~~y~V~~~Ptl~ 153 (181)
.....+...+|+..+.+.+++++|+||++||++|+.+.|.++++++.+.+ .+.++.+|++.+..++++|+|+++||++
T Consensus 357 ~~v~~l~~~~f~~~v~~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~~~~~~~v~~~Pt~~ 436 (477)
T PTZ00102 357 GPVKVVVGNTFEEIVFKSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANETPLEEFSWSAFPTIL 436 (477)
T ss_pred CCeEEecccchHHHHhcCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCccchhcCCCcccCeEE
Confidence 34556789999998888899999999999999999999999999999875 4889999999999999999999999999
Q ss_pred EEeCCeEE-EEEeCCCCHHHHHHHHHhh
Q 030222 154 IFKNGEKK-DTVIGAVPKSTLTTSIEKF 180 (181)
Q Consensus 154 i~~~G~~~-~~~~G~~~~~~l~~~i~~~ 180 (181)
+|++|+.+ .++.|.++.+.+.++|++.
T Consensus 437 ~~~~~~~~~~~~~G~~~~~~l~~~i~~~ 464 (477)
T PTZ00102 437 FVKAGERTPIPYEGERTVEGFKEFVNKH 464 (477)
T ss_pred EEECCCcceeEecCcCCHHHHHHHHHHc
Confidence 99877654 5799999999999999875
No 56
>PTZ00102 disulphide isomerase; Provisional
Probab=99.76 E-value=9.9e-18 Score=144.02 Aligned_cols=104 Identities=26% Similarity=0.562 Sum_probs=92.8
Q ss_pred cceeeeccchhhHHHhhCCCcEEEEEECCCChhhhhhhhhHHHHHHHhc---CceEEEEEeCCCChHHHHHcCCCcccEE
Q 030222 76 AQETAVEDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYV---GKLKCYKVNTDESPSIATRYGIRSIPTV 152 (181)
Q Consensus 76 ~~~~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~la~~~~---~~v~~~~vd~d~~~~l~~~y~V~~~Ptl 152 (181)
.....++..+|+..+ .+++.++|+||++||++|+.+.|.+.++++.+. .++.++.||++++.+++++|+|.++||+
T Consensus 32 ~~v~~l~~~~f~~~i-~~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~~i~~~Pt~ 110 (477)
T PTZ00102 32 EHVTVLTDSTFDKFI-TENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFGVRGYPTI 110 (477)
T ss_pred CCcEEcchhhHHHHH-hcCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHHHhcCCCcccEE
Confidence 345678888998865 557799999999999999999999999988774 3599999999999999999999999999
Q ss_pred EEEeCCeEEEEEeCCCCHHHHHHHHHhhC
Q 030222 153 MIFKNGEKKDTVIGAVPKSTLTTSIEKFL 181 (181)
Q Consensus 153 ~i~~~G~~~~~~~G~~~~~~l~~~i~~~L 181 (181)
++|++|+.+ .+.|.++.+.|.+||++++
T Consensus 111 ~~~~~g~~~-~y~g~~~~~~l~~~l~~~~ 138 (477)
T PTZ00102 111 KFFNKGNPV-NYSGGRTADGIVSWIKKLT 138 (477)
T ss_pred EEEECCceE-EecCCCCHHHHHHHHHHhh
Confidence 999999887 8999999999999999863
No 57
>PLN02309 5'-adenylylsulfate reductase
Probab=99.76 E-value=9.4e-18 Score=142.78 Aligned_cols=107 Identities=21% Similarity=0.417 Sum_probs=91.0
Q ss_pred cccceeeeccchhhHHHh--hCCCcEEEEEECCCChhhhhhhhhHHHHHHHhcCc-eEEEEEeCC-CChHHHH-HcCCCc
Q 030222 74 CEAQETAVEDATWQSLVL--DSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGK-LKCYKVNTD-ESPSIAT-RYGIRS 148 (181)
Q Consensus 74 ~~~~~~~l~~~~~~~~~~--~~~~~vlV~F~a~wC~~C~~~~p~l~~la~~~~~~-v~~~~vd~d-~~~~l~~-~y~V~~ 148 (181)
....+..++.++|+.++. ..+++++|+||++||++|+.+.|.+++++++|.+. +.|+++|+| ++.+++. +|+|++
T Consensus 343 ~~~~Vv~Lt~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~la~~~~~I~~ 422 (457)
T PLN02309 343 NSQNVVALSRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGS 422 (457)
T ss_pred CCCCcEECCHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHHHHhhCCCce
Confidence 344566788899998774 46889999999999999999999999999999764 999999999 7788886 699999
Q ss_pred ccEEEEEeCCeE-EEEEe-CCCCHHHHHHHHHhh
Q 030222 149 IPTVMIFKNGEK-KDTVI-GAVPKSTLTTSIEKF 180 (181)
Q Consensus 149 ~Ptl~i~~~G~~-~~~~~-G~~~~~~l~~~i~~~ 180 (181)
+|||++|++|.. ...|. |.++.+.|.+||+.+
T Consensus 423 ~PTil~f~~g~~~~v~Y~~~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 423 FPTILLFPKNSSRPIKYPSEKRDVDSLLSFVNSL 456 (457)
T ss_pred eeEEEEEeCCCCCeeecCCCCcCHHHHHHHHHHh
Confidence 999999987753 33465 579999999999875
No 58
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.75 E-value=5.7e-18 Score=119.19 Aligned_cols=98 Identities=17% Similarity=0.255 Sum_probs=79.7
Q ss_pred eeeeccchhhHHHhhCCCcEEEEEEC--CCCh---hhhhhhhhHHHHHHHhcCceEEEEEeCC-----CChHHHHHcCCC
Q 030222 78 ETAVEDATWQSLVLDSGSPVLVEFWA--PWCG---PCRMIHPIIDELSKQYVGKLKCYKVNTD-----ESPSIATRYGIR 147 (181)
Q Consensus 78 ~~~l~~~~~~~~~~~~~~~vlV~F~a--~wC~---~C~~~~p~l~~la~~~~~~v~~~~vd~d-----~~~~l~~~y~V~ 147 (181)
...++..+|+..+ .+.+.+||.||+ +||+ +|+.++|.+.+.+. .+.+.+||++ ++.+|+++|+|+
T Consensus 3 ~v~L~~~nF~~~v-~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~----~v~lakVd~~d~~~~~~~~L~~~y~I~ 77 (116)
T cd03007 3 CVDLDTVTFYKVI-PKFKYSLVKFDTAYPYGEKHEAFTRLAESSASATD----DLLVAEVGIKDYGEKLNMELGERYKLD 77 (116)
T ss_pred eeECChhhHHHHH-hcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcC----ceEEEEEecccccchhhHHHHHHhCCC
Confidence 3568899999955 667889999999 8888 66666665555432 3889999994 578899999999
Q ss_pred --cccEEEEEeCCe--EEEEEeCC-CCHHHHHHHHHhh
Q 030222 148 --SIPTVMIFKNGE--KKDTVIGA-VPKSTLTTSIEKF 180 (181)
Q Consensus 148 --~~Ptl~i~~~G~--~~~~~~G~-~~~~~l~~~i~~~ 180 (181)
++|||.+|++|+ ....|.|. ++.+.|.+||++.
T Consensus 78 ~~gyPTl~lF~~g~~~~~~~Y~G~~r~~~~lv~~v~~~ 115 (116)
T cd03007 78 KESYPVIYLFHGGDFENPVPYSGADVTVDALQRFLKGN 115 (116)
T ss_pred cCCCCEEEEEeCCCcCCCccCCCCcccHHHHHHHHHhc
Confidence 999999999985 33578896 9999999999863
No 59
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.75 E-value=6.7e-18 Score=116.26 Aligned_cols=88 Identities=24% Similarity=0.395 Sum_probs=81.3
Q ss_pred CCcEEEEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCCCChHHHHHcCCC--cccEEEEEeC--CeEEEEEeCCCC
Q 030222 94 GSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIR--SIPTVMIFKN--GEKKDTVIGAVP 169 (181)
Q Consensus 94 ~~~vlV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~y~V~--~~Ptl~i~~~--G~~~~~~~G~~~ 169 (181)
++++++.||++||++|+.+.+.+.++++++.+++.|+.+|.|+++++++.|||. ++|+++++++ |+......|..+
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~~~~~~~~k~~~~~~~~~ 91 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDFGRHLEYFGLKEEDLPVIAIINLSDGKKYLMPEEELT 91 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHHHHHHcCCChhhCCEEEEEecccccccCCCccccC
Confidence 689999999999999999999999999999999999999999999999999999 9999999987 766666666679
Q ss_pred HHHHHHHHHhhC
Q 030222 170 KSTLTTSIEKFL 181 (181)
Q Consensus 170 ~~~l~~~i~~~L 181 (181)
.+.|.+||++++
T Consensus 92 ~~~l~~fi~~~~ 103 (103)
T cd02982 92 AESLEEFVEDFL 103 (103)
T ss_pred HHHHHHHHHhhC
Confidence 999999999875
No 60
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.73 E-value=2.1e-17 Score=117.02 Aligned_cols=96 Identities=15% Similarity=0.320 Sum_probs=76.9
Q ss_pred eccchhhHHHhhC-CCcEEEEEEC-------CCChhhhhhhhhHHHHHHHhcCceEEEEEeCCC-------ChHHHHHcC
Q 030222 81 VEDATWQSLVLDS-GSPVLVEFWA-------PWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDE-------SPSIATRYG 145 (181)
Q Consensus 81 l~~~~~~~~~~~~-~~~vlV~F~a-------~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~-------~~~l~~~y~ 145 (181)
.+.++|...+... +++++|+||| +||++|+.+.|.++++++++++++.|+.||+++ +.++..+|+
T Consensus 7 ~~~~~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~ 86 (119)
T cd02952 7 RGYEEFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPK 86 (119)
T ss_pred cCHHHHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccC
Confidence 3456777766654 6899999999 999999999999999999999779999999976 468999999
Q ss_pred CC-cccEEEEEeCCeEEEEEeCCCCHHHHHHHH
Q 030222 146 IR-SIPTVMIFKNGEKKDTVIGAVPKSTLTTSI 177 (181)
Q Consensus 146 V~-~~Ptl~i~~~G~~~~~~~G~~~~~~l~~~i 177 (181)
|+ ++||++++++|+.+.. ..-.+.+.+..++
T Consensus 87 I~~~iPT~~~~~~~~~l~~-~~c~~~~~~~~~~ 118 (119)
T cd02952 87 LTTGVPTLLRWKTPQRLVE-DECLQADLVEMFF 118 (119)
T ss_pred cccCCCEEEEEcCCceecc-hhhcCHHHHHHhh
Confidence 99 9999999987765432 1124555555543
No 61
>PTZ00062 glutaredoxin; Provisional
Probab=99.72 E-value=5.7e-17 Score=124.84 Aligned_cols=89 Identities=13% Similarity=0.182 Sum_probs=76.6
Q ss_pred ccchhhHHHhhCCCcEEEEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEeCCeEE
Q 030222 82 EDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKK 161 (181)
Q Consensus 82 ~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~y~V~~~Ptl~i~~~G~~~ 161 (181)
+.+++..++....+.++++||++||++|+.+.|.+++++++|+ ++.|+.||.| |+|.++|||++|++|+++
T Consensus 5 ~~ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~-~~~F~~V~~d--------~~V~~vPtfv~~~~g~~i 75 (204)
T PTZ00062 5 KKEEKDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFP-SLEFYVVNLA--------DANNEYGVFEFYQNSQLI 75 (204)
T ss_pred CHHHHHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCC-CcEEEEEccc--------cCcccceEEEEEECCEEE
Confidence 3456666554444689999999999999999999999999997 5999999987 999999999999999999
Q ss_pred EEEeCCCCHHHHHHHHHhh
Q 030222 162 DTVIGAVPKSTLTTSIEKF 180 (181)
Q Consensus 162 ~~~~G~~~~~~l~~~i~~~ 180 (181)
.++.|. +..+|..+|+++
T Consensus 76 ~r~~G~-~~~~~~~~~~~~ 93 (204)
T PTZ00062 76 NSLEGC-NTSTLVSFIRGW 93 (204)
T ss_pred eeeeCC-CHHHHHHHHHHH
Confidence 999997 466688777664
No 62
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.71 E-value=1.8e-16 Score=120.74 Aligned_cols=87 Identities=25% Similarity=0.535 Sum_probs=72.5
Q ss_pred hCCCcEEEEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCCCCh-----------------------HHHHHcCCCc
Q 030222 92 DSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESP-----------------------SIATRYGIRS 148 (181)
Q Consensus 92 ~~~~~vlV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~-----------------------~l~~~y~V~~ 148 (181)
..+++++|+||++||++|+.++|.++++.++ .+.++.|+.++++ .+.+.|||.+
T Consensus 66 ~~gk~vvv~FwatwC~~C~~e~p~l~~l~~~---~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~ 142 (185)
T PRK15412 66 TQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ---GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYG 142 (185)
T ss_pred cCCCEEEEEEECCCCHHHHHHHHHHHHHHHc---CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCCc
Confidence 3689999999999999999999999998653 4777888765432 3556899999
Q ss_pred ccE-EEEEeCCeEEEEEeCCCCHHHHHHHHHhhC
Q 030222 149 IPT-VMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 181 (181)
Q Consensus 149 ~Pt-l~i~~~G~~~~~~~G~~~~~~l~~~i~~~L 181 (181)
+|+ +++.++|+++.++.|..+.++++++|+.+|
T Consensus 143 ~P~t~vid~~G~i~~~~~G~~~~~~l~~~i~~~~ 176 (185)
T PRK15412 143 APETFLIDGNGIIRYRHAGDLNPRVWESEIKPLW 176 (185)
T ss_pred CCeEEEECCCceEEEEEecCCCHHHHHHHHHHHH
Confidence 996 555579999999999999999999998764
No 63
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.70 E-value=1.3e-16 Score=137.47 Aligned_cols=99 Identities=23% Similarity=0.380 Sum_probs=80.9
Q ss_pred eccchhhHHHhhCCCcEEEEEECCCChhhhhhhhhHHHHHHHhcC-ceEEEEE---------------------------
Q 030222 81 VEDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVG-KLKCYKV--------------------------- 132 (181)
Q Consensus 81 l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~la~~~~~-~v~~~~v--------------------------- 132 (181)
+.+.+...+.+.++++|+|+|||+||++|+.++|.|++++++++. ++.++.|
T Consensus 43 l~D~dG~~v~lskGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~p 122 (521)
T PRK14018 43 TADNRPASVYLKKDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLP 122 (521)
T ss_pred eecCCCceeeccCCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccc
Confidence 333444444556789999999999999999999999999999873 3555444
Q ss_pred -eCCCChHHHHHcCCCcccEEEE-EeCCeEEEEEeCCCCHHHHHHHHHh
Q 030222 133 -NTDESPSIATRYGIRSIPTVMI-FKNGEKKDTVIGAVPKSTLTTSIEK 179 (181)
Q Consensus 133 -d~d~~~~l~~~y~V~~~Ptl~i-~~~G~~~~~~~G~~~~~~l~~~i~~ 179 (181)
+.|.+..+.+.|+|.++||+++ +++|+++.++.|.++.++|.++|+.
T Consensus 123 V~~D~~~~lak~fgV~giPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie~ 171 (521)
T PRK14018 123 VLTDNGGTLAQSLNISVYPSWAIIGKDGDVQRIVKGSISEAQALALIRN 171 (521)
T ss_pred eeccccHHHHHHcCCCCcCeEEEEcCCCeEEEEEeCCCCHHHHHHHHHH
Confidence 4456678999999999999755 4799999999999999999999984
No 64
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.70 E-value=2.6e-16 Score=116.38 Aligned_cols=86 Identities=24% Similarity=0.459 Sum_probs=69.2
Q ss_pred CCcEEEEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCCCC------------hHHH-HHc---CCCcccEEEEE-e
Q 030222 94 GSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDES------------PSIA-TRY---GIRSIPTVMIF-K 156 (181)
Q Consensus 94 ~~~vlV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~------------~~l~-~~y---~V~~~Ptl~i~-~ 156 (181)
++..+|+||++||++|+.++|.+++++++|+ +.++.|+.|+. .+.. ..| ++.++||.+++ +
T Consensus 50 ~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~--~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LID~ 127 (153)
T TIGR02738 50 DDYALVFFYQSTCPYCHQFAPVLKRFSQQFG--LPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLVNV 127 (153)
T ss_pred CCCEEEEEECCCChhHHHHHHHHHHHHHHcC--CcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEEeC
Confidence 5667999999999999999999999999985 56667776643 2333 345 89999996666 5
Q ss_pred CCeE-EEEEeCCCCHHHHHHHHHhhC
Q 030222 157 NGEK-KDTVIGAVPKSTLTTSIEKFL 181 (181)
Q Consensus 157 ~G~~-~~~~~G~~~~~~l~~~i~~~L 181 (181)
+|++ ...+.|.++.+++.+.|+++|
T Consensus 128 ~G~~i~~~~~G~~s~~~l~~~I~~ll 153 (153)
T TIGR02738 128 NTRKAYPVLQGAVDEAELANRMDEIL 153 (153)
T ss_pred CCCEEEEEeecccCHHHHHHHHHHhC
Confidence 7665 557899999999999999876
No 65
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.70 E-value=1.4e-16 Score=124.17 Aligned_cols=87 Identities=25% Similarity=0.447 Sum_probs=75.7
Q ss_pred CCcEEEEEEC---CCChhhhhhhhhHHHHHHHhcC-ceEEEEEeCCCChHHHHHcCCCcccEEEEEeCCeEEE-EEeCCC
Q 030222 94 GSPVLVEFWA---PWCGPCRMIHPIIDELSKQYVG-KLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKD-TVIGAV 168 (181)
Q Consensus 94 ~~~vlV~F~a---~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~d~~~~l~~~y~V~~~Ptl~i~~~G~~~~-~~~G~~ 168 (181)
+...++.|++ +||++|+.+.|.++++++++++ .+.++.+|.|++++++++|+|+++||+++|++|+.+. ++.|..
T Consensus 19 ~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~g~~~~~~~~G~~ 98 (215)
T TIGR02187 19 NPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDKEEAEKYGVERVPTTIILEEGKDGGIRYTGIP 98 (215)
T ss_pred CCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcccHHHHHHcCCCccCEEEEEeCCeeeEEEEeecC
Confidence 4455667888 9999999999999999999963 2456677777999999999999999999999999984 899999
Q ss_pred CHHHHHHHHHhh
Q 030222 169 PKSTLTTSIEKF 180 (181)
Q Consensus 169 ~~~~l~~~i~~~ 180 (181)
+.+++.++|+++
T Consensus 99 ~~~~l~~~i~~~ 110 (215)
T TIGR02187 99 AGYEFAALIEDI 110 (215)
T ss_pred CHHHHHHHHHHH
Confidence 999999999876
No 66
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.68 E-value=6.1e-16 Score=116.63 Aligned_cols=87 Identities=29% Similarity=0.552 Sum_probs=72.3
Q ss_pred hCCCcEEEEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeC-----------------------CCChHHHHHcCCCc
Q 030222 92 DSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNT-----------------------DESPSIATRYGIRS 148 (181)
Q Consensus 92 ~~~~~vlV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~-----------------------d~~~~l~~~y~V~~ 148 (181)
..+++++|+||++||++|+.+.|.++++.++ ++.++.|+. |.+..+.+.|++.+
T Consensus 61 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~---~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~~ 137 (173)
T TIGR00385 61 IQGKPVLLNVWASWCPPCRAEHPYLNELAKD---GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGVYG 137 (173)
T ss_pred cCCCEEEEEEECCcCHHHHHHHHHHHHHHHc---CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCCee
Confidence 3588999999999999999999999998764 355555553 44456788999999
Q ss_pred ccE-EEEEeCCeEEEEEeCCCCHHHHHHHHHhhC
Q 030222 149 IPT-VMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 181 (181)
Q Consensus 149 ~Pt-l~i~~~G~~~~~~~G~~~~~~l~~~i~~~L 181 (181)
+|+ ++++++|+++.++.|..+.+++.++|+++|
T Consensus 138 ~P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~~~ 171 (173)
T TIGR00385 138 APETFLVDGNGVILYRHAGPLNNEVWTEGFLPAM 171 (173)
T ss_pred CCeEEEEcCCceEEEEEeccCCHHHHHHHHHHHh
Confidence 996 555589999999999999999999999875
No 67
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.67 E-value=8.1e-17 Score=114.12 Aligned_cols=79 Identities=20% Similarity=0.479 Sum_probs=63.3
Q ss_pred HHHhhCCCcEEEEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCCCCh-HHHHHcCCCc--ccEEEEEe-CCeEEEE
Q 030222 88 SLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESP-SIATRYGIRS--IPTVMIFK-NGEKKDT 163 (181)
Q Consensus 88 ~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~-~l~~~y~V~~--~Ptl~i~~-~G~~~~~ 163 (181)
+....++++++|+||++||++|+.+.|.+.+..+....+..|+.++.|.+. .+.++|++.+ +||++++. +|+++.+
T Consensus 13 ~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~~Gk~~~~ 92 (117)
T cd02959 13 KEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSPDGGYIPRILFLDPSGDVHPE 92 (117)
T ss_pred HHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhcccCCCccceEEEECCCCCCchh
Confidence 335567899999999999999999999999987765444567777777664 4568999986 99999995 9999885
Q ss_pred EeC
Q 030222 164 VIG 166 (181)
Q Consensus 164 ~~G 166 (181)
+.+
T Consensus 93 ~~~ 95 (117)
T cd02959 93 IIN 95 (117)
T ss_pred hcc
Confidence 443
No 68
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.67 E-value=9.9e-17 Score=112.08 Aligned_cols=86 Identities=24% Similarity=0.551 Sum_probs=67.5
Q ss_pred hCCCcEEEEEECCCChhhhhhhhhHHH---HHHHhcCceEEEEEeCCCC--------------------hHHHHHcCCCc
Q 030222 92 DSGSPVLVEFWAPWCGPCRMIHPIIDE---LSKQYVGKLKCYKVNTDES--------------------PSIATRYGIRS 148 (181)
Q Consensus 92 ~~~~~vlV~F~a~wC~~C~~~~p~l~~---la~~~~~~v~~~~vd~d~~--------------------~~l~~~y~V~~ 148 (181)
.++++++++||++||++|+.+.+.+.+ +...+.+++.++.++++.. .+++++|||.+
T Consensus 3 ~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~g 82 (112)
T PF13098_consen 3 GNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNG 82 (112)
T ss_dssp TTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--S
T ss_pred CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCc
Confidence 468899999999999999999998875 4455555688888888653 35899999999
Q ss_pred ccEEEEEe-CCeEEEEEeCCCCHHHHHHHH
Q 030222 149 IPTVMIFK-NGEKKDTVIGAVPKSTLTTSI 177 (181)
Q Consensus 149 ~Ptl~i~~-~G~~~~~~~G~~~~~~l~~~i 177 (181)
+||+++++ +|+++.++.|.++.++|.++|
T Consensus 83 tPt~~~~d~~G~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 83 TPTIVFLDKDGKIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp SSEEEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred cCEEEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence 99999995 899999999999999998875
No 69
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.67 E-value=4.9e-16 Score=132.53 Aligned_cols=103 Identities=26% Similarity=0.558 Sum_probs=91.2
Q ss_pred cceeeeccchhhHHHhhCCCcEEEEEECCCChhhhhhhhhHHHHHHHhcC---ceEEEEEeCCCChHHHHHcCCCcccEE
Q 030222 76 AQETAVEDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVG---KLKCYKVNTDESPSIATRYGIRSIPTV 152 (181)
Q Consensus 76 ~~~~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~la~~~~~---~v~~~~vd~d~~~~l~~~y~V~~~Ptl 152 (181)
.....+...+|..++...++.++|+||++||++|+.+.|.++++++.+.+ ++.++.+|++.+. +.. |+|+++||+
T Consensus 346 ~~v~~l~~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~-~~~-~~i~~~Pt~ 423 (462)
T TIGR01130 346 GPVKVLVGKNFDEIVLDETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAND-VPP-FEVEGFPTI 423 (462)
T ss_pred CccEEeeCcCHHHHhccCCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCc-cCC-CCccccCEE
Confidence 34556889999999888899999999999999999999999999999987 6999999999774 444 999999999
Q ss_pred EEEeCCeEE--EEEeCCCCHHHHHHHHHhh
Q 030222 153 MIFKNGEKK--DTVIGAVPKSTLTTSIEKF 180 (181)
Q Consensus 153 ~i~~~G~~~--~~~~G~~~~~~l~~~i~~~ 180 (181)
++|++|+.. ..+.|..+.+.|.++|++.
T Consensus 424 ~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~ 453 (462)
T TIGR01130 424 KFVPAGKKSEPVPYDGDRTLEDFSKFIAKH 453 (462)
T ss_pred EEEeCCCCcCceEecCcCCHHHHHHHHHhc
Confidence 999988753 5788999999999999875
No 70
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.66 E-value=6.9e-16 Score=110.26 Aligned_cols=79 Identities=28% Similarity=0.648 Sum_probs=66.7
Q ss_pred CCCcEEEEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEe-----------------------CCCChHHHHHcCCCcc
Q 030222 93 SGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVN-----------------------TDESPSIATRYGIRSI 149 (181)
Q Consensus 93 ~~~~vlV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd-----------------------~d~~~~l~~~y~V~~~ 149 (181)
++++++|+||++||++|+.+.|.++++.++++ +.++.|+ .|.+..+++.|++.++
T Consensus 24 ~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~~--~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v~~~ 101 (127)
T cd03010 24 KGKPYLLNVWASWCAPCREEHPVLMALARQGR--VPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLGVYGV 101 (127)
T ss_pred CCCEEEEEEEcCcCHHHHHHHHHHHHHHHhcC--cEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcCCCCC
Confidence 58899999999999999999999999988873 5555555 3556678899999999
Q ss_pred cE-EEEEeCCeEEEEEeCCCCHHHH
Q 030222 150 PT-VMIFKNGEKKDTVIGAVPKSTL 173 (181)
Q Consensus 150 Pt-l~i~~~G~~~~~~~G~~~~~~l 173 (181)
|+ +++.++|+++.++.|..+++.|
T Consensus 102 P~~~~ld~~G~v~~~~~G~~~~~~~ 126 (127)
T cd03010 102 PETFLIDGDGIIRYKHVGPLTPEVW 126 (127)
T ss_pred CeEEEECCCceEEEEEeccCChHhc
Confidence 96 5555799999999999988765
No 71
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=99.66 E-value=6.7e-16 Score=101.23 Aligned_cols=73 Identities=16% Similarity=0.329 Sum_probs=61.7
Q ss_pred EEEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEeCCeEEEEEeCC-CCHHHHHHH
Q 030222 98 LVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGA-VPKSTLTTS 176 (181)
Q Consensus 98 lV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~y~V~~~Ptl~i~~~G~~~~~~~G~-~~~~~l~~~ 176 (181)
.|.||++||++|+.+.|.+++++++++..+.++.+| +.+.+.+||+.++||+++ ||+++ +.|. .+.+++.++
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~---~~~~a~~~~v~~vPti~i--~G~~~--~~G~~~~~~~l~~~ 74 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELGIDAEFEKVT---DMNEILEAGVTATPGVAV--DGELV--IMGKIPSKEEIKEI 74 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcCCCeEEEEeC---CHHHHHHcCCCcCCEEEE--CCEEE--EEeccCCHHHHHHH
Confidence 478999999999999999999999998878887777 345588899999999998 89887 7775 445778777
Q ss_pred H
Q 030222 177 I 177 (181)
Q Consensus 177 i 177 (181)
|
T Consensus 75 l 75 (76)
T TIGR00412 75 L 75 (76)
T ss_pred h
Confidence 6
No 72
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.66 E-value=1.4e-15 Score=118.50 Aligned_cols=96 Identities=22% Similarity=0.354 Sum_probs=78.5
Q ss_pred eeccchhhHHHhhCCCcEEEEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEeCCe
Q 030222 80 AVEDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGE 159 (181)
Q Consensus 80 ~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~y~V~~~Ptl~i~~~G~ 159 (181)
.++.++.+.+...++..+++.||++||++|+.+.+.+++++.+++ ++.+..+|.+++++++++|||+++||++++++|+
T Consensus 119 ~L~~~~~~~l~~~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~-~i~~~~vD~~~~~~~~~~~~V~~vPtl~i~~~~~ 197 (215)
T TIGR02187 119 GLSEKTVELLQSLDEPVRIEVFVTPTCPYCPYAVLMAHKFALAND-KILGEMIEANENPDLAEKYGVMSVPKIVINKGVE 197 (215)
T ss_pred CCCHHHHHHHHhcCCCcEEEEEECCCCCCcHHHHHHHHHHHHhcC-ceEEEEEeCCCCHHHHHHhCCccCCEEEEecCCE
Confidence 344444444332233345555999999999999999999998864 6999999999999999999999999999998886
Q ss_pred EEEEEeCCCCHHHHHHHHHh
Q 030222 160 KKDTVIGAVPKSTLTTSIEK 179 (181)
Q Consensus 160 ~~~~~~G~~~~~~l~~~i~~ 179 (181)
. +.|..+.++|.++|++
T Consensus 198 ~---~~G~~~~~~l~~~l~~ 214 (215)
T TIGR02187 198 E---FVGAYPEEQFLEYILS 214 (215)
T ss_pred E---EECCCCHHHHHHHHHh
Confidence 4 8899999999999976
No 73
>PHA02125 thioredoxin-like protein
Probab=99.65 E-value=1.1e-15 Score=99.83 Aligned_cols=71 Identities=28% Similarity=0.594 Sum_probs=60.2
Q ss_pred EEEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEeCCeEEEEEeCCCC-HHHHHHH
Q 030222 98 LVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVP-KSTLTTS 176 (181)
Q Consensus 98 lV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~y~V~~~Ptl~i~~~G~~~~~~~G~~~-~~~l~~~ 176 (181)
+++||++||++|+.+.|.|+++. +.++.||.+++.+++++|+|+++||++ +|+.+.++.|... ..+|++.
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~------~~~~~vd~~~~~~l~~~~~v~~~PT~~---~g~~~~~~~G~~~~~~~l~~~ 72 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE------YTYVDVDTDEGVELTAKHHIRSLPTLV---NTSTLDRFTGVPRNVAELKEK 72 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh------heEEeeeCCCCHHHHHHcCCceeCeEE---CCEEEEEEeCCCCcHHHHHHH
Confidence 78999999999999999997652 467899999999999999999999987 7898889999633 3666655
Q ss_pred H
Q 030222 177 I 177 (181)
Q Consensus 177 i 177 (181)
|
T Consensus 73 ~ 73 (75)
T PHA02125 73 L 73 (75)
T ss_pred h
Confidence 4
No 74
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=2.7e-16 Score=133.68 Aligned_cols=102 Identities=29% Similarity=0.602 Sum_probs=88.0
Q ss_pred cceeeeccchhhHHHhhCCCcEEEEEECCCChhhhhhhhhHHHHHHHhcC--ceEEEEEeCCCChHHHHHcCCCcccEEE
Q 030222 76 AQETAVEDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVG--KLKCYKVNTDESPSIATRYGIRSIPTVM 153 (181)
Q Consensus 76 ~~~~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~la~~~~~--~v~~~~vd~d~~~~l~~~y~V~~~Ptl~ 153 (181)
..+..+-..+|+.++.+++|-|||.||||||+||+.+.|.+++|++.|++ ++.++++|...|. ....++.++|||+
T Consensus 366 ~pVkvvVgknfd~iv~de~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKmDaTaNd--~~~~~~~~fPTI~ 443 (493)
T KOG0190|consen 366 SPVKVVVGKNFDDIVLDEGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKMDATAND--VPSLKVDGFPTIL 443 (493)
T ss_pred CCeEEEeecCHHHHhhccccceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEecccccc--CccccccccceEE
Confidence 45677889999999999999999999999999999999999999999986 4888899887764 3445778899999
Q ss_pred EEeCCe--EEEEEeCCCCHHHHHHHHHh
Q 030222 154 IFKNGE--KKDTVIGAVPKSTLTTSIEK 179 (181)
Q Consensus 154 i~~~G~--~~~~~~G~~~~~~l~~~i~~ 179 (181)
+++.|. ....|.|.+..++|..+|++
T Consensus 444 ~~pag~k~~pv~y~g~R~le~~~~fi~~ 471 (493)
T KOG0190|consen 444 FFPAGHKSNPVIYNGDRTLEDLKKFIKK 471 (493)
T ss_pred EecCCCCCCCcccCCCcchHHHHhhhcc
Confidence 998776 34468899999999999875
No 75
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.64 E-value=4.4e-16 Score=123.86 Aligned_cols=98 Identities=36% Similarity=0.601 Sum_probs=87.1
Q ss_pred cchhhHHHhhCCCcEEEEEECCCChhhhhhhhhHHHHHHHh----c-CceEEEEEeCCCChHHHHHcCCCcccEEEEEeC
Q 030222 83 DATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQY----V-GKLKCYKVNTDESPSIATRYGIRSIPTVMIFKN 157 (181)
Q Consensus 83 ~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~la~~~----~-~~v~~~~vd~d~~~~l~~~y~V~~~Ptl~i~~~ 157 (181)
.++++.+ +.....|+|.|||+||+..++++|.+.+.++.+ + +++.+..||||.+..|+.+|.|.-+||+.+|+|
T Consensus 3 ~~N~~~i-l~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~KyPTlKvfrn 81 (375)
T KOG0912|consen 3 SENIDSI-LDSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKYPTLKVFRN 81 (375)
T ss_pred cccHHHh-hccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccCceeeeeec
Confidence 4556664 445789999999999999999999999988765 3 468899999999999999999999999999999
Q ss_pred CeEEE-EEeCCCCHHHHHHHHHhhC
Q 030222 158 GEKKD-TVIGAVPKSTLTTSIEKFL 181 (181)
Q Consensus 158 G~~~~-~~~G~~~~~~l~~~i~~~L 181 (181)
|+.+. .|.|.++.+.|.++|++.+
T Consensus 82 G~~~~rEYRg~RsVeaL~efi~kq~ 106 (375)
T KOG0912|consen 82 GEMMKREYRGQRSVEALIEFIEKQL 106 (375)
T ss_pred cchhhhhhccchhHHHHHHHHHHHh
Confidence 99988 7999999999999999864
No 76
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.64 E-value=3.5e-15 Score=119.97 Aligned_cols=86 Identities=20% Similarity=0.333 Sum_probs=72.6
Q ss_pred CCCcEEEEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCCC-----------ChHHHHHcCCCcccEEEEEeC-CeE
Q 030222 93 SGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDE-----------SPSIATRYGIRSIPTVMIFKN-GEK 160 (181)
Q Consensus 93 ~~~~vlV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~-----------~~~l~~~y~V~~~Ptl~i~~~-G~~ 160 (181)
.++++||+||++||++|+.++|.|++++++|+ +.++.|+.|. +..++++|||+++||++++++ |+.
T Consensus 165 ~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg--~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~~~~~ 242 (271)
T TIGR02740 165 AKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG--IEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADPDPNQ 242 (271)
T ss_pred cCCeEEEEEECCCCccHHHHhHHHHHHHHHcC--cEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEECCCCE
Confidence 48899999999999999999999999999996 5677777765 357899999999999988864 554
Q ss_pred E-EEEeCCCCHHHHHHHHHhh
Q 030222 161 K-DTVIGAVPKSTLTTSIEKF 180 (181)
Q Consensus 161 ~-~~~~G~~~~~~l~~~i~~~ 180 (181)
+ ....|.++.++|.+.|..+
T Consensus 243 v~~v~~G~~s~~eL~~~i~~~ 263 (271)
T TIGR02740 243 FTPIGFGVMSADELVDRILLA 263 (271)
T ss_pred EEEEEeCCCCHHHHHHHHHHH
Confidence 4 4566999999999988754
No 77
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=99.63 E-value=9.2e-15 Score=104.87 Aligned_cols=100 Identities=15% Similarity=0.284 Sum_probs=85.1
Q ss_pred eccchhhHHHhhCCCcEEEEEECC--CChhhhhhhhhHHHHHHHhcC-ceEEEEEeCCCChHHHHHcCCCcccEEEEEeC
Q 030222 81 VEDATWQSLVLDSGSPVLVEFWAP--WCGPCRMIHPIIDELSKQYVG-KLKCYKVNTDESPSIATRYGIRSIPTVMIFKN 157 (181)
Q Consensus 81 l~~~~~~~~~~~~~~~vlV~F~a~--wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~d~~~~l~~~y~V~~~Ptl~i~~~ 157 (181)
++..+.+..+. .+...+++|-.+ -++.+....-.|++++++|++ ++++++||.|++++++.+|||+++||+++|++
T Consensus 22 ~~~~~~~~~~~-~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~~LA~~fgV~siPTLl~Fkd 100 (132)
T PRK11509 22 VSESRLDDWLT-QAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGVFRFPATLVFTG 100 (132)
T ss_pred cccccHHHHHh-CCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCHHHHHHcCCccCCEEEEEEC
Confidence 44566777554 344455555443 568899999999999999984 59999999999999999999999999999999
Q ss_pred CeEEEEEeCCCCHHHHHHHHHhhC
Q 030222 158 GEKKDTVIGAVPKSTLTTSIEKFL 181 (181)
Q Consensus 158 G~~~~~~~G~~~~~~l~~~i~~~L 181 (181)
|+.+.++.|..+++++.++|+++|
T Consensus 101 Gk~v~~i~G~~~k~~l~~~I~~~L 124 (132)
T PRK11509 101 GNYRGVLNGIHPWAELINLMRGLV 124 (132)
T ss_pred CEEEEEEeCcCCHHHHHHHHHHHh
Confidence 999999999999999999999875
No 78
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=99.62 E-value=4.7e-15 Score=105.94 Aligned_cols=91 Identities=14% Similarity=0.160 Sum_probs=71.9
Q ss_pred HHhhCCCcEEEEEECCCChhhhhhhhhH---HHHHHHhcCceEEEEEeCCCChHHHHH--------cCCCcccEEEEE-e
Q 030222 89 LVLDSGSPVLVEFWAPWCGPCRMIHPII---DELSKQYVGKLKCYKVNTDESPSIATR--------YGIRSIPTVMIF-K 156 (181)
Q Consensus 89 ~~~~~~~~vlV~F~a~wC~~C~~~~p~l---~~la~~~~~~v~~~~vd~d~~~~l~~~--------y~V~~~Ptl~i~-~ 156 (181)
...+++|+|+|+||++||++|+.+.+.. .++++.+..++.++.+|.++.+++.++ ||+.++||++++ .
T Consensus 10 ~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~vfl~~ 89 (124)
T cd02955 10 KARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLNVFLTP 89 (124)
T ss_pred HHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEEEEECC
Confidence 3667799999999999999999998743 467777766789999999998887653 589999998888 6
Q ss_pred CCeEEEEEeCC-----CCHHHHHHHHHh
Q 030222 157 NGEKKDTVIGA-----VPKSTLTTSIEK 179 (181)
Q Consensus 157 ~G~~~~~~~G~-----~~~~~l~~~i~~ 179 (181)
+|+++....+. .+...+.+++++
T Consensus 90 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (124)
T cd02955 90 DLKPFFGGTYFPPEDRYGRPGFKTVLEK 117 (124)
T ss_pred CCCEEeeeeecCCCCcCCCcCHHHHHHH
Confidence 89999877655 333455555554
No 79
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=99.62 E-value=2.6e-15 Score=131.92 Aligned_cols=98 Identities=15% Similarity=0.464 Sum_probs=82.0
Q ss_pred ccchhhHHHh---hCCCcEEEEEECCCChhhhhhhhhH---HHHHHHhcCceEEEEEeCCC----ChHHHHHcCCCcccE
Q 030222 82 EDATWQSLVL---DSGSPVLVEFWAPWCGPCRMIHPII---DELSKQYVGKLKCYKVNTDE----SPSIATRYGIRSIPT 151 (181)
Q Consensus 82 ~~~~~~~~~~---~~~~~vlV~F~a~wC~~C~~~~p~l---~~la~~~~~~v~~~~vd~d~----~~~l~~~y~V~~~Pt 151 (181)
+.+++++.+. +++|+|+|+||++||++|+.+.+.+ +++.++++ ++.++++|.++ +.+++++|+|.++||
T Consensus 459 s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~-~~~~v~vDvt~~~~~~~~l~~~~~v~g~Pt 537 (571)
T PRK00293 459 TVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA-DTVLLQADVTANNAEDVALLKHYNVLGLPT 537 (571)
T ss_pred CHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc-CCEEEEEECCCCChhhHHHHHHcCCCCCCE
Confidence 3455655443 3578999999999999999998875 67888886 58899999975 367899999999999
Q ss_pred EEEEe-CCeEE--EEEeCCCCHHHHHHHHHhh
Q 030222 152 VMIFK-NGEKK--DTVIGAVPKSTLTTSIEKF 180 (181)
Q Consensus 152 l~i~~-~G~~~--~~~~G~~~~~~l~~~i~~~ 180 (181)
+++|+ +|+++ .++.|..+.+++.++|+++
T Consensus 538 ~~~~~~~G~~i~~~r~~G~~~~~~f~~~L~~~ 569 (571)
T PRK00293 538 ILFFDAQGQEIPDARVTGFMDAAAFAAHLRQL 569 (571)
T ss_pred EEEECCCCCCcccccccCCCCHHHHHHHHHHh
Confidence 99995 88884 6889999999999999986
No 80
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.61 E-value=4.7e-15 Score=108.67 Aligned_cols=72 Identities=18% Similarity=0.377 Sum_probs=59.8
Q ss_pred hCCCcEEEEEECCCChhhhhhhhhHHHHHHHhcC--------ceEEEEEeCCCCh-------------------------
Q 030222 92 DSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVG--------KLKCYKVNTDESP------------------------- 138 (181)
Q Consensus 92 ~~~~~vlV~F~a~wC~~C~~~~p~l~~la~~~~~--------~v~~~~vd~d~~~------------------------- 138 (181)
-++++++|+|||+||++|+.++|.|+++++++.+ ++.++.|+.|++.
T Consensus 23 ~kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~ 102 (146)
T cd03008 23 LENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRR 102 (146)
T ss_pred hCCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHH
Confidence 3689999999999999999999999998876653 4788888876432
Q ss_pred HHHHHcCCCcccEEEEE-eCCeEEEE
Q 030222 139 SIATRYGIRSIPTVMIF-KNGEKKDT 163 (181)
Q Consensus 139 ~l~~~y~V~~~Ptl~i~-~~G~~~~~ 163 (181)
.+.++|+|.++||++++ ++|+++.+
T Consensus 103 ~l~~~y~v~~iPt~vlId~~G~Vv~~ 128 (146)
T cd03008 103 ELEAQFSVEELPTVVVLKPDGDVLAA 128 (146)
T ss_pred HHHHHcCCCCCCEEEEECCCCcEEee
Confidence 47789999999997776 69999875
No 81
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.59 E-value=8.1e-15 Score=136.41 Aligned_cols=89 Identities=25% Similarity=0.453 Sum_probs=77.7
Q ss_pred CCCcEEEEEECCCChhhhhhhhhHHHHHHHhcCc-eEEEEEeC---------------------------CCChHHHHHc
Q 030222 93 SGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGK-LKCYKVNT---------------------------DESPSIATRY 144 (181)
Q Consensus 93 ~~~~vlV~F~a~wC~~C~~~~p~l~~la~~~~~~-v~~~~vd~---------------------------d~~~~l~~~y 144 (181)
++|+|||+|||+||++|+.+.|.|++++++|+++ +.++.|.. |.+..+.++|
T Consensus 419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~ 498 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWREL 498 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHhc
Confidence 5899999999999999999999999999999865 77777742 2345678899
Q ss_pred CCCcccEEEEE-eCCeEEEEEeCCCCHHHHHHHHHhhC
Q 030222 145 GIRSIPTVMIF-KNGEKKDTVIGAVPKSTLTTSIEKFL 181 (181)
Q Consensus 145 ~V~~~Ptl~i~-~~G~~~~~~~G~~~~~~l~~~i~~~L 181 (181)
+|.++|+++++ ++|+++.++.|....++|.++|+++|
T Consensus 499 ~V~~iPt~ilid~~G~iv~~~~G~~~~~~l~~~l~~~l 536 (1057)
T PLN02919 499 GVSSWPTFAVVSPNGKLIAQLSGEGHRKDLDDLVEAAL 536 (1057)
T ss_pred CCCccceEEEECCCCeEEEEEecccCHHHHHHHHHHHH
Confidence 99999998888 79999999999999999999998764
No 82
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.59 E-value=1.9e-14 Score=107.76 Aligned_cols=89 Identities=30% Similarity=0.691 Sum_probs=77.9
Q ss_pred hCCCcEEEEEECCCChhhhhhhhhHHHHHHHhcCc-eEEEEEeCCC----------------------ChHHHHHcCCCc
Q 030222 92 DSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGK-LKCYKVNTDE----------------------SPSIATRYGIRS 148 (181)
Q Consensus 92 ~~~~~vlV~F~a~wC~~C~~~~p~l~~la~~~~~~-v~~~~vd~d~----------------------~~~l~~~y~V~~ 148 (181)
..+++++|+||++||++|+...+.+.++++++++. +.++.|+.|. +..+.++|||..
T Consensus 59 ~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~ 138 (173)
T PRK03147 59 LKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGVGP 138 (173)
T ss_pred cCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcCCCC
Confidence 35789999999999999999999999999999764 8888888753 457789999999
Q ss_pred ccEEEEE-eCCeEEEEEeCCCCHHHHHHHHHhh
Q 030222 149 IPTVMIF-KNGEKKDTVIGAVPKSTLTTSIEKF 180 (181)
Q Consensus 149 ~Ptl~i~-~~G~~~~~~~G~~~~~~l~~~i~~~ 180 (181)
+|+++++ ++|+++..+.|..+.+++.++++++
T Consensus 139 ~P~~~lid~~g~i~~~~~g~~~~~~l~~~l~~~ 171 (173)
T PRK03147 139 LPTTFLIDKDGKVVKVITGEMTEEQLEEYLEKI 171 (173)
T ss_pred cCeEEEECCCCcEEEEEeCCCCHHHHHHHHHHh
Confidence 9986666 6999999999999999999999874
No 83
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=99.59 E-value=2.1e-15 Score=120.20 Aligned_cols=86 Identities=29% Similarity=0.621 Sum_probs=76.3
Q ss_pred CCCcEEEEEECCCChhhhhhhhhHHHHHHHhcC---ceEEEEEeCCCChHHHHHcCCCcccEEEEEeCCeEEEEEeCCCC
Q 030222 93 SGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVG---KLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVP 169 (181)
Q Consensus 93 ~~~~vlV~F~a~wC~~C~~~~p~l~~la~~~~~---~v~~~~vd~d~~~~l~~~y~V~~~Ptl~i~~~G~~~~~~~G~~~ 169 (181)
.+..++|+||||||++|+++.|.|+++.-++.+ -+++.++|+...+.++.+|||+++||+.+|++|-.+. |.|.+.
T Consensus 42 dddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTIk~~kgd~a~d-YRG~R~ 120 (468)
T KOG4277|consen 42 DDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTIKFFKGDHAID-YRGGRE 120 (468)
T ss_pred cCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCceEEEecCCeeee-cCCCcc
Confidence 467999999999999999999999999877654 3899999999999999999999999999998777665 788899
Q ss_pred HHHHHHHHHh
Q 030222 170 KSTLTTSIEK 179 (181)
Q Consensus 170 ~~~l~~~i~~ 179 (181)
++.+..+-.+
T Consensus 121 Kd~iieFAhR 130 (468)
T KOG4277|consen 121 KDAIIEFAHR 130 (468)
T ss_pred HHHHHHHHHh
Confidence 9999887654
No 84
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=6.7e-15 Score=123.78 Aligned_cols=100 Identities=33% Similarity=0.637 Sum_probs=89.6
Q ss_pred eccchhhHHHhhCCCcEEEEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEeCCeE
Q 030222 81 VEDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEK 160 (181)
Q Consensus 81 l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~y~V~~~Ptl~i~~~G~~ 160 (181)
.....|.......+++++|+||++||++|+.+.|.+.+++..+.+.+.+..||++++.+++.+|+|+++||+.+|.+|..
T Consensus 34 ~~~~~~~~~~~~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~~~~~~~y~i~gfPtl~~f~~~~~ 113 (383)
T KOG0191|consen 34 LTLDSFFDFLLKDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDEHKDLCEKYGIQGFPTLKVFRPGKK 113 (383)
T ss_pred hhccccHHHhhccCCceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchhhHHHHHhcCCccCcEEEEEcCCCc
Confidence 33566677777788999999999999999999999999999999999999999999999999999999999999998855
Q ss_pred EEEEeCCCCHHHHHHHHHhh
Q 030222 161 KDTVIGAVPKSTLTTSIEKF 180 (181)
Q Consensus 161 ~~~~~G~~~~~~l~~~i~~~ 180 (181)
...+.|....+.+.+++.+.
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~ 133 (383)
T KOG0191|consen 114 PIDYSGPRNAESLAEFLIKE 133 (383)
T ss_pred eeeccCcccHHHHHHHHHHh
Confidence 66788888999998888764
No 85
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.58 E-value=2e-14 Score=108.46 Aligned_cols=82 Identities=20% Similarity=0.380 Sum_probs=68.1
Q ss_pred EEEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCCCC-------------hHHHHHcCC--CcccEEEEE-eCCeEE
Q 030222 98 LVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDES-------------PSIATRYGI--RSIPTVMIF-KNGEKK 161 (181)
Q Consensus 98 lV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~-------------~~l~~~y~V--~~~Ptl~i~-~~G~~~ 161 (181)
+|+||++||++|+.++|.+++++++|+ +.++.|+.|+. ..+.+.||+ .++|+.+++ ++|+++
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g--~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~i~ 150 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYG--FSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLEA 150 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcC--CEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCcEE
Confidence 778999999999999999999999995 67777776633 236778995 699985555 799986
Q ss_pred -EEEeCCCCHHHHHHHHHhhC
Q 030222 162 -DTVIGAVPKSTLTTSIEKFL 181 (181)
Q Consensus 162 -~~~~G~~~~~~l~~~i~~~L 181 (181)
..+.|.++.++|.+.|++++
T Consensus 151 ~~~~~G~~~~~~L~~~I~~ll 171 (181)
T PRK13728 151 LPLLQGATDAAGFMARMDTVL 171 (181)
T ss_pred EEEEECCCCHHHHHHHHHHHH
Confidence 57999999999999998864
No 86
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.57 E-value=1.4e-14 Score=103.99 Aligned_cols=71 Identities=28% Similarity=0.564 Sum_probs=60.4
Q ss_pred CCCcEEEEEECCCChhhhhhhhhHHHHHHHhcC---ceEEEEEeCCCC------------------------hHHHHHcC
Q 030222 93 SGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVG---KLKCYKVNTDES------------------------PSIATRYG 145 (181)
Q Consensus 93 ~~~~vlV~F~a~wC~~C~~~~p~l~~la~~~~~---~v~~~~vd~d~~------------------------~~l~~~y~ 145 (181)
.+++++|+||++||++|+.+.|.+.++++++.+ ++.++.|+.|.+ ..++++|+
T Consensus 17 ~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (131)
T cd03009 17 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFK 96 (131)
T ss_pred CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcC
Confidence 588999999999999999999999999988863 477888887754 35778999
Q ss_pred CCcccEEEEE-eCCeEEEE
Q 030222 146 IRSIPTVMIF-KNGEKKDT 163 (181)
Q Consensus 146 V~~~Ptl~i~-~~G~~~~~ 163 (181)
|.++|+++++ ++|+++.+
T Consensus 97 v~~~P~~~lid~~G~i~~~ 115 (131)
T cd03009 97 IEGIPTLIILDADGEVVTT 115 (131)
T ss_pred CCCCCEEEEECCCCCEEcc
Confidence 9999998888 49998764
No 87
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.57 E-value=1.4e-14 Score=104.44 Aligned_cols=71 Identities=27% Similarity=0.569 Sum_probs=60.1
Q ss_pred CCCcEEEEEECCCChhhhhhhhhHHHHHHHhcC---ceEEEEEeCCCCh-------------------------HHHHHc
Q 030222 93 SGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVG---KLKCYKVNTDESP-------------------------SIATRY 144 (181)
Q Consensus 93 ~~~~vlV~F~a~wC~~C~~~~p~l~~la~~~~~---~v~~~~vd~d~~~-------------------------~l~~~y 144 (181)
+|++++|+||++||++|+.++|.++++++++.+ ++.++.|+.|... .+.+.|
T Consensus 16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 95 (132)
T cd02964 16 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQF 95 (132)
T ss_pred CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHc
Confidence 589999999999999999999999999998875 4778888877542 456779
Q ss_pred CCCcccEEEEE-eCCeEEEE
Q 030222 145 GIRSIPTVMIF-KNGEKKDT 163 (181)
Q Consensus 145 ~V~~~Ptl~i~-~~G~~~~~ 163 (181)
+|.++|+++++ ++|+++.+
T Consensus 96 ~v~~iPt~~lid~~G~iv~~ 115 (132)
T cd02964 96 KVEGIPTLVVLKPDGDVVTT 115 (132)
T ss_pred CCCCCCEEEEECCCCCEEch
Confidence 99999998877 58888764
No 88
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.57 E-value=1.6e-14 Score=98.03 Aligned_cols=67 Identities=39% Similarity=0.860 Sum_probs=56.3
Q ss_pred CCcEEEEEECCCChhhhhhhhhHHHHHHHhc--CceEEEEEeCCCCh-------------------------HHHHHcCC
Q 030222 94 GSPVLVEFWAPWCGPCRMIHPIIDELSKQYV--GKLKCYKVNTDESP-------------------------SIATRYGI 146 (181)
Q Consensus 94 ~~~vlV~F~a~wC~~C~~~~p~l~~la~~~~--~~v~~~~vd~d~~~-------------------------~l~~~y~V 146 (181)
||+++|+||++||++|+++.|.+.++.++|+ +++.++.|+.|++. .+.+.|+|
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i 80 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGI 80 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCC
Confidence 6899999999999999999999999999999 67999999997652 47889999
Q ss_pred CcccEEEEE-eCCeE
Q 030222 147 RSIPTVMIF-KNGEK 160 (181)
Q Consensus 147 ~~~Ptl~i~-~~G~~ 160 (181)
.++|+++++ ++|++
T Consensus 81 ~~iP~~~lld~~G~I 95 (95)
T PF13905_consen 81 NGIPTLVLLDPDGKI 95 (95)
T ss_dssp TSSSEEEEEETTSBE
T ss_pred CcCCEEEEECCCCCC
Confidence 999997777 57764
No 89
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.56 E-value=2.9e-14 Score=104.09 Aligned_cols=78 Identities=37% Similarity=0.759 Sum_probs=66.5
Q ss_pred hCCCcEEEEEECC-CChhhhhhhhhHHHHHHHhcCc-eEEEEEeCC---------------------CChHHHHHcCCC-
Q 030222 92 DSGSPVLVEFWAP-WCGPCRMIHPIIDELSKQYVGK-LKCYKVNTD---------------------ESPSIATRYGIR- 147 (181)
Q Consensus 92 ~~~~~vlV~F~a~-wC~~C~~~~p~l~~la~~~~~~-v~~~~vd~d---------------------~~~~l~~~y~V~- 147 (181)
-++++++|+||+. |||+|+..+|.+++++++|.++ +.++.|..+ .+..+.++|++.
T Consensus 26 ~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 105 (146)
T PF08534_consen 26 FKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAKALGVTI 105 (146)
T ss_dssp GTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHHHTTCEE
T ss_pred hCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHHHhCCcc
Confidence 4689999999999 9999999999999999997654 888777764 334688899988
Q ss_pred --------cccEE-EEEeCCeEEEEEeCCCC
Q 030222 148 --------SIPTV-MIFKNGEKKDTVIGAVP 169 (181)
Q Consensus 148 --------~~Ptl-~i~~~G~~~~~~~G~~~ 169 (181)
++|++ ++.++|++++...|..+
T Consensus 106 ~~~~~~~~~~P~~~lId~~G~V~~~~~g~~~ 136 (146)
T PF08534_consen 106 MEDPGNGFGIPTTFLIDKDGKVVYRHVGPDP 136 (146)
T ss_dssp ECCTTTTSSSSEEEEEETTSBEEEEEESSBT
T ss_pred ccccccCCeecEEEEEECCCEEEEEEeCCCC
Confidence 99985 55589999999999877
No 90
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=99.56 E-value=6.9e-14 Score=110.09 Aligned_cols=90 Identities=19% Similarity=0.228 Sum_probs=71.6
Q ss_pred hCCCcEEEEEECCCChhhhhhhhhHHHHHHHhcCc-eEEEEEeCCC-------C----hHHH-HHcCC------------
Q 030222 92 DSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGK-LKCYKVNTDE-------S----PSIA-TRYGI------------ 146 (181)
Q Consensus 92 ~~~~~vlV~F~a~wC~~C~~~~p~l~~la~~~~~~-v~~~~vd~d~-------~----~~l~-~~y~V------------ 146 (181)
..|+++||+||++||++|+..+|.|++++++|.++ +.++.|++|. . .+++ ++|++
T Consensus 97 ~kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~~~g~~fPvl~~~D~~G 176 (236)
T PLN02399 97 FKGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKQFACTRFKAEFPIFDKVDVNG 176 (236)
T ss_pred hCCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCccccccCCCc
Confidence 35899999999999999999999999999999764 8888888641 1 1222 23321
Q ss_pred ----------------------CcccE-EEEEeCCeEEEEEeCCCCHHHHHHHHHhhC
Q 030222 147 ----------------------RSIPT-VMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 181 (181)
Q Consensus 147 ----------------------~~~Pt-l~i~~~G~~~~~~~G~~~~~~l~~~i~~~L 181 (181)
+..|+ +++.++|+++.++.|..+.++|++.|+++|
T Consensus 177 ~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~~~~~~le~~I~~lL 234 (236)
T PLN02399 177 PSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPTTSPFQIEKDIQKLL 234 (236)
T ss_pred chhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCCCCHHHHHHHHHHHh
Confidence 23476 556689999999999999999999999876
No 91
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.55 E-value=4.8e-14 Score=99.93 Aligned_cols=84 Identities=30% Similarity=0.625 Sum_probs=66.9
Q ss_pred hCCCcEEEEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEe---------------------CCCChHHHHHcCCCccc
Q 030222 92 DSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVN---------------------TDESPSIATRYGIRSIP 150 (181)
Q Consensus 92 ~~~~~vlV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd---------------------~d~~~~l~~~y~V~~~P 150 (181)
..+++++|+||++||++|+.+.|.+.++++++. +..+.+| .|.+..++++|+|.++|
T Consensus 18 ~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P 95 (123)
T cd03011 18 LSGKPVLVYFWATWCPVCRFTSPTVNQLAADYP--VVSVALRSGDDGAVARFMQKKGYGFPVINDPDGVISARWGVSVTP 95 (123)
T ss_pred hCCCEEEEEEECCcChhhhhhChHHHHHHhhCC--EEEEEccCCCHHHHHHHHHHcCCCccEEECCCcHHHHhCCCCccc
Confidence 356899999999999999999999999988743 1111111 24556899999999999
Q ss_pred EEEEEeCCeEEEEEeCCCCHHHHHHHH
Q 030222 151 TVMIFKNGEKKDTVIGAVPKSTLTTSI 177 (181)
Q Consensus 151 tl~i~~~G~~~~~~~G~~~~~~l~~~i 177 (181)
+++++++|+++..+.|..+.++|.+.+
T Consensus 96 ~~~vid~~gi~~~~~g~~~~~~~~~~~ 122 (123)
T cd03011 96 AIVIVDPGGIVFVTTGVTSEWGLRLRL 122 (123)
T ss_pred EEEEEcCCCeEEEEeccCCHHHHHhhc
Confidence 988886555888999999999987653
No 92
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=99.53 E-value=6.5e-14 Score=89.17 Aligned_cols=63 Identities=22% Similarity=0.436 Sum_probs=55.8
Q ss_pred EEEEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEeCCeEEE
Q 030222 97 VLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKD 162 (181)
Q Consensus 97 vlV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~y~V~~~Ptl~i~~~G~~~~ 162 (181)
-++.||++||++|+.+.+.+++++++++ ++.+..+|.+++++++++||+.++||+++ +|+.+.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~-~i~~~~id~~~~~~l~~~~~i~~vPti~i--~~~~~~ 64 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNP-NISAEMIDAAEFPDLADEYGVMSVPAIVI--NGKVEF 64 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCC-ceEEEEEEcccCHhHHHHcCCcccCEEEE--CCEEEE
Confidence 4778999999999999999999988764 69999999999999999999999999876 666543
No 93
>PTZ00056 glutathione peroxidase; Provisional
Probab=99.53 E-value=6.5e-14 Score=107.93 Aligned_cols=89 Identities=15% Similarity=0.199 Sum_probs=71.6
Q ss_pred CCCcEEEEEECCCChhhhhhhhhHHHHHHHhcC-ceEEEEEeCCC-------C----hHHHHHcCC--------------
Q 030222 93 SGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVG-KLKCYKVNTDE-------S----PSIATRYGI-------------- 146 (181)
Q Consensus 93 ~~~~vlV~F~a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~d~-------~----~~l~~~y~V-------------- 146 (181)
.|+++||+||++||++|+..+|.|++++++|.+ .+.++.|++++ + ..+++++++
T Consensus 38 kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~e~~~~f~~~~~~~fpvl~d~~v~g~~ 117 (199)
T PTZ00056 38 KNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNTKDIRKFNDKNKIKYNFFEPIEVNGEN 117 (199)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCCCHHHHHHHHHHcCCCceeeeeeeccCCc
Confidence 589999999999999999999999999999986 48899998642 1 234445443
Q ss_pred ----------------------Cccc----EEEEEeCCeEEEEEeCCCCHHHHHHHHHhhC
Q 030222 147 ----------------------RSIP----TVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 181 (181)
Q Consensus 147 ----------------------~~~P----tl~i~~~G~~~~~~~G~~~~~~l~~~i~~~L 181 (181)
..+| |+++.++|+++.++.|..+.+.+.+.|+++|
T Consensus 118 ~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~~g~~~~~~l~~~I~~ll 178 (199)
T PTZ00056 118 THELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYFSPRTEPLELEKKIAELL 178 (199)
T ss_pred cCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEeCCCCCHHHHHHHHHHHH
Confidence 1223 5777799999999999999999999998874
No 94
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=99.52 E-value=1.5e-13 Score=92.71 Aligned_cols=76 Identities=14% Similarity=0.253 Sum_probs=66.1
Q ss_pred CCcEEEEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEeCCeEEEEEeCCCCHHHH
Q 030222 94 GSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTL 173 (181)
Q Consensus 94 ~~~vlV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~y~V~~~Ptl~i~~~G~~~~~~~G~~~~~~l 173 (181)
+.+-+..|+++||++|....+.+++++++++ ++.+..+|.++.++++++|||.++||+++ ||+++. .|..+.+++
T Consensus 12 ~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~-~i~~~~vd~~~~~e~a~~~~V~~vPt~vi--dG~~~~--~G~~~~~e~ 86 (89)
T cd03026 12 GPINFETYVSLSCHNCPDVVQALNLMAVLNP-NIEHEMIDGALFQDEVEERGIMSVPAIFL--NGELFG--FGRMTLEEI 86 (89)
T ss_pred CCEEEEEEECCCCCCcHHHHHHHHHHHHHCC-CceEEEEEhHhCHHHHHHcCCccCCEEEE--CCEEEE--eCCCCHHHH
Confidence 4567888999999999999999999999887 59999999999999999999999999975 888776 476666654
Q ss_pred H
Q 030222 174 T 174 (181)
Q Consensus 174 ~ 174 (181)
.
T Consensus 87 ~ 87 (89)
T cd03026 87 L 87 (89)
T ss_pred h
Confidence 3
No 95
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=99.51 E-value=2.3e-13 Score=95.74 Aligned_cols=92 Identities=13% Similarity=0.188 Sum_probs=77.4
Q ss_pred HHhhCCCcEEEEEECCCChhhhhhhhhH---HHHHHHhcCceEEEEEeCC--CChHHHHHcCCCcccEEEEEe--CCeEE
Q 030222 89 LVLDSGSPVLVEFWAPWCGPCRMIHPII---DELSKQYVGKLKCYKVNTD--ESPSIATRYGIRSIPTVMIFK--NGEKK 161 (181)
Q Consensus 89 ~~~~~~~~vlV~F~a~wC~~C~~~~p~l---~~la~~~~~~v~~~~vd~d--~~~~l~~~y~V~~~Ptl~i~~--~G~~~ 161 (181)
....++|+++|+|+++||++|+.+...+ .++.+.+..+..++.+|.+ +..+++..|++.++|+++++. +|+++
T Consensus 12 ~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~~g~~l 91 (114)
T cd02958 12 EAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDPRTGEVL 91 (114)
T ss_pred HHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccHHHHHHHhCccCCCeEEEEeCccCcEe
Confidence 3455689999999999999999998754 5677777666777778876 456789999999999988884 79999
Q ss_pred EEEeCCCCHHHHHHHHHhh
Q 030222 162 DTVIGAVPKSTLTTSIEKF 180 (181)
Q Consensus 162 ~~~~G~~~~~~l~~~i~~~ 180 (181)
.++.|..+.+++...|++.
T Consensus 92 ~~~~G~~~~~~f~~~L~~~ 110 (114)
T cd02958 92 KVWSGNITPEDLLSQLIEF 110 (114)
T ss_pred EEEcCCCCHHHHHHHHHHH
Confidence 9999999999999998875
No 96
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.50 E-value=1.8e-13 Score=97.83 Aligned_cols=75 Identities=24% Similarity=0.506 Sum_probs=63.4
Q ss_pred CCCcEEEEEECCCChhhhhhhhhHHHHHHHhcC-ceEEEEEeC---------------------------CCChHHHHHc
Q 030222 93 SGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVG-KLKCYKVNT---------------------------DESPSIATRY 144 (181)
Q Consensus 93 ~~~~vlV~F~a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~---------------------------d~~~~l~~~y 144 (181)
++++++|+||+.||++|+...|.|++++++|++ ++.++.|+. |.+..+.+.|
T Consensus 22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~ 101 (126)
T cd03012 22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWRAY 101 (126)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHHHh
Confidence 578999999999999999999999999999985 477777754 2234577889
Q ss_pred CCCcccEEEEE-eCCeEEEEEeCC
Q 030222 145 GIRSIPTVMIF-KNGEKKDTVIGA 167 (181)
Q Consensus 145 ~V~~~Ptl~i~-~~G~~~~~~~G~ 167 (181)
++.++|+.+++ ++|+++..+.|.
T Consensus 102 ~v~~~P~~~vid~~G~v~~~~~G~ 125 (126)
T cd03012 102 GNQYWPALYLIDPTGNVRHVHFGE 125 (126)
T ss_pred CCCcCCeEEEECCCCcEEEEEecC
Confidence 99999997767 699999998885
No 97
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.49 E-value=2.9e-13 Score=93.29 Aligned_cols=74 Identities=36% Similarity=0.852 Sum_probs=66.3
Q ss_pred CCCcEEEEEECCCChhhhhhhhhHHHHHHHhc-CceEEEEEeCCCC-----------------------hHHHHHcCCCc
Q 030222 93 SGSPVLVEFWAPWCGPCRMIHPIIDELSKQYV-GKLKCYKVNTDES-----------------------PSIATRYGIRS 148 (181)
Q Consensus 93 ~~~~vlV~F~a~wC~~C~~~~p~l~~la~~~~-~~v~~~~vd~d~~-----------------------~~l~~~y~V~~ 148 (181)
.+++++|+||++||++|+...+.+.++.+++. .++.++.|+.|.+ ..+.+.|++.+
T Consensus 18 ~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (116)
T cd02966 18 KGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGVRG 97 (116)
T ss_pred CCCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCcCc
Confidence 47899999999999999999999999999996 3599999999986 78899999999
Q ss_pred ccEEEEE-eCCeEEEEEeC
Q 030222 149 IPTVMIF-KNGEKKDTVIG 166 (181)
Q Consensus 149 ~Ptl~i~-~~G~~~~~~~G 166 (181)
+|+++++ ++|+++.++.|
T Consensus 98 ~P~~~l~d~~g~v~~~~~g 116 (116)
T cd02966 98 LPTTFLIDRDGRIRARHVG 116 (116)
T ss_pred cceEEEECCCCcEEEEecC
Confidence 9998777 58999988766
No 98
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.48 E-value=2.5e-13 Score=94.98 Aligned_cols=71 Identities=21% Similarity=0.485 Sum_probs=55.6
Q ss_pred CCCcEEEEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCCC--------------------ChHHHHHcCCCcccEE
Q 030222 93 SGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDE--------------------SPSIATRYGIRSIPTV 152 (181)
Q Consensus 93 ~~~~vlV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~--------------------~~~l~~~y~V~~~Ptl 152 (181)
++++++|+||++||++|+.+.|.++++++++.+++.++.+..+. +.++.++|++..+|+.
T Consensus 20 ~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~P~~ 99 (114)
T cd02967 20 PGRPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLASDGEKAEHQRFLKKHGLEAFPYVLSAELGMAYQVSKLPYA 99 (114)
T ss_pred CCCeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEeCCCHHHHHHHHHHhCCCCCcEEecHHHHhhcCCCCcCeE
Confidence 47899999999999999999999999999887767776663211 1246678889999986
Q ss_pred EEE-eCCeEEEE
Q 030222 153 MIF-KNGEKKDT 163 (181)
Q Consensus 153 ~i~-~~G~~~~~ 163 (181)
+++ ++|+++.+
T Consensus 100 ~vid~~G~v~~~ 111 (114)
T cd02967 100 VLLDEAGVIAAK 111 (114)
T ss_pred EEECCCCeEEec
Confidence 666 58887754
No 99
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=2.1e-13 Score=114.72 Aligned_cols=104 Identities=28% Similarity=0.505 Sum_probs=95.2
Q ss_pred ceeeeccchhhHHHhhCCCcEEEEEECCCChhhhhhhhhHHHHHHHhc--CceEEEEEeCCCChHHHHHcCCCcccEEEE
Q 030222 77 QETAVEDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYV--GKLKCYKVNTDESPSIATRYGIRSIPTVMI 154 (181)
Q Consensus 77 ~~~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~la~~~~--~~v~~~~vd~d~~~~l~~~y~V~~~Ptl~i 154 (181)
....++..+|...+...+..++|.||+|||++|+.+.|.+++++..+. ..+.+..+|++.+..++.+++|+++||+.+
T Consensus 145 ~v~~l~~~~~~~~~~~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~~~~~~~~~~v~~~Pt~~~ 224 (383)
T KOG0191|consen 145 EVFELTKDNFDETVKDSDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATVHKSLASRLEVRGYPTLKL 224 (383)
T ss_pred ceEEccccchhhhhhccCcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccchHHHHhhhhcccCCceEEE
Confidence 367788899999888889999999999999999999999999999885 569999999999999999999999999999
Q ss_pred EeCCeE-EEEEeCCCCHHHHHHHHHhh
Q 030222 155 FKNGEK-KDTVIGAVPKSTLTTSIEKF 180 (181)
Q Consensus 155 ~~~G~~-~~~~~G~~~~~~l~~~i~~~ 180 (181)
|++|+. ...+.|.++.+.+..|+++.
T Consensus 225 f~~~~~~~~~~~~~R~~~~i~~~v~~~ 251 (383)
T KOG0191|consen 225 FPPGEEDIYYYSGLRDSDSIVSFVEKK 251 (383)
T ss_pred ecCCCcccccccccccHHHHHHHHHhh
Confidence 998888 78899999999999999864
No 100
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=99.46 E-value=4.1e-13 Score=101.82 Aligned_cols=82 Identities=21% Similarity=0.259 Sum_probs=64.7
Q ss_pred CCCcEEEEEECCCChhhhhhhhhHHHHHHHhcCceEE------EEEeCC-----------------------------CC
Q 030222 93 SGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKC------YKVNTD-----------------------------ES 137 (181)
Q Consensus 93 ~~~~vlV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~------~~vd~d-----------------------------~~ 137 (181)
.||+.+|+|||.||++|+..+|.++++.++ ++.+ ..||.| .+
T Consensus 58 ~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~---~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~~ 134 (184)
T TIGR01626 58 AGKVRVVHHIAGRTSAKEXNASLIDAIKAA---KFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDDK 134 (184)
T ss_pred CCCEEEEEEEecCCChhhccchHHHHHHHc---CCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECCc
Confidence 499999999999999999999999999653 1333 445544 33
Q ss_pred hHHHHHcCCCcccE--EEEEeCCeEEEEEeCCCCHHHHHHHH
Q 030222 138 PSIATRYGIRSIPT--VMIFKNGEKKDTVIGAVPKSTLTTSI 177 (181)
Q Consensus 138 ~~l~~~y~V~~~Pt--l~i~~~G~~~~~~~G~~~~~~l~~~i 177 (181)
..+..+||+.++|+ +++.++|+++.++.|.++.+++.+.+
T Consensus 135 g~v~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~ee~e~~~ 176 (184)
T TIGR01626 135 GAVKNAWQLNSEDSAIIVLDKTGKVKFVKEGALSDSDIQTVI 176 (184)
T ss_pred chHHHhcCCCCCCceEEEECCCCcEEEEEeCCCCHHHHHHHH
Confidence 45677999999974 46668999999999999988776643
No 101
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=99.44 E-value=1e-12 Score=97.02 Aligned_cols=90 Identities=19% Similarity=0.245 Sum_probs=72.0
Q ss_pred hCCCcEEEEEECCCChhhhhhhhhHHHHHHHhcC-ceEEEEEeCC--------C---ChHHHHH-cCC------------
Q 030222 92 DSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVG-KLKCYKVNTD--------E---SPSIATR-YGI------------ 146 (181)
Q Consensus 92 ~~~~~vlV~F~a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~d--------~---~~~l~~~-y~V------------ 146 (181)
-.||+++|+||++||++|+..+|.+++++++|++ .+.++.|+++ . ..+.+++ +++
T Consensus 20 ~~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~~~~~f~~~~~~~~fp~~~d~~~~~ 99 (153)
T TIGR02540 20 YRGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPDSSKEIESFARRNYGVTFPMFSKIKILG 99 (153)
T ss_pred hCCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccCCCCCHHHHHHHHHHhcCCCCCccceEecCC
Confidence 3588999999999999999999999999999975 5888888851 1 1222322 221
Q ss_pred --------------Cccc-----EEEEEeCCeEEEEEeCCCCHHHHHHHHHhhC
Q 030222 147 --------------RSIP-----TVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 181 (181)
Q Consensus 147 --------------~~~P-----tl~i~~~G~~~~~~~G~~~~~~l~~~i~~~L 181 (181)
..+| ++++.++|+++.++.|..+.++|.+.|+++|
T Consensus 100 ~~~~~~~~~~~~~~~~~p~~~~~tflID~~G~v~~~~~g~~~~~~l~~~i~~l~ 153 (153)
T TIGR02540 100 SEAEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRPEEPVEEIRPEITALV 153 (153)
T ss_pred CCCCcHHHHHHhcCCCCCCCccEEEEEcCCCcEEEEECCCCCHHHHHHHHHHhC
Confidence 1478 5777799999999999999999999999876
No 102
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=99.42 E-value=1.7e-12 Score=99.18 Aligned_cols=84 Identities=21% Similarity=0.395 Sum_probs=62.7
Q ss_pred CCCcEEEEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCC--------------------CChHHHHHcCCCcccEE
Q 030222 93 SGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTD--------------------ESPSIATRYGIRSIPTV 152 (181)
Q Consensus 93 ~~~~vlV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d--------------------~~~~l~~~y~V~~~Ptl 152 (181)
.+++++|+||++||++|+.+.|.+.++.+++. +.++.++.+ ...++.+.|++..+|+.
T Consensus 73 ~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~~--~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P~~ 150 (189)
T TIGR02661 73 PGRPTLLMFTAPSCPVCDKLFPIIKSIARAEE--TDVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKIPYG 150 (189)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHhcC--CcEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCccceE
Confidence 57899999999999999999999999988764 344444421 23467889999999985
Q ss_pred EE-EeCCeEEEEEeCCCCHHHHHHHHHh
Q 030222 153 MI-FKNGEKKDTVIGAVPKSTLTTSIEK 179 (181)
Q Consensus 153 ~i-~~~G~~~~~~~G~~~~~~l~~~i~~ 179 (181)
++ .++|+++.+. .....+.+++.++.
T Consensus 151 ~lID~~G~I~~~g-~~~~~~~le~ll~~ 177 (189)
T TIGR02661 151 VLLDQDGKIRAKG-LTNTREHLESLLEA 177 (189)
T ss_pred EEECCCCeEEEcc-CCCCHHHHHHHHHH
Confidence 55 5799888752 23456677777664
No 103
>PLN02412 probable glutathione peroxidase
Probab=99.42 E-value=1.4e-12 Score=97.87 Aligned_cols=89 Identities=19% Similarity=0.263 Sum_probs=70.9
Q ss_pred CCCcEEEEEECCCChhhhhhhhhHHHHHHHhcCc-eEEEEEeCCC-------C-hHH----HHHcC--------------
Q 030222 93 SGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGK-LKCYKVNTDE-------S-PSI----ATRYG-------------- 145 (181)
Q Consensus 93 ~~~~vlV~F~a~wC~~C~~~~p~l~~la~~~~~~-v~~~~vd~d~-------~-~~l----~~~y~-------------- 145 (181)
.++++||+||++||++|+..+|.+++++++|.++ +.++.|++|. . .++ .++++
T Consensus 28 ~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~~~~~~~~~~~~~~fpvl~~~d~~g~ 107 (167)
T PLN02412 28 KGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSNEEIQQTVCTRFKAEFPIFDKVDVNGK 107 (167)
T ss_pred CCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCCHHHHHHHHHHccCCCCceEeEEeeCCC
Confidence 5799999999999999999999999999999864 8899988642 1 121 22221
Q ss_pred --------------------CCcccE-EEEEeCCeEEEEEeCCCCHHHHHHHHHhhC
Q 030222 146 --------------------IRSIPT-VMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 181 (181)
Q Consensus 146 --------------------V~~~Pt-l~i~~~G~~~~~~~G~~~~~~l~~~i~~~L 181 (181)
|...|+ +++.++|+++.++.|..+.+++.+.|+++|
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~g~~~~~~l~~~i~~~l 164 (167)
T PLN02412 108 NTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYAPTTSPLKIEKDIQNLL 164 (167)
T ss_pred CCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEECCCCCHHHHHHHHHHHH
Confidence 334577 555589999999999999999999998875
No 104
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.40 E-value=1.3e-13 Score=117.83 Aligned_cols=105 Identities=22% Similarity=0.459 Sum_probs=83.1
Q ss_pred cceeeeccchhhHHHhhCCCcEEEEEECCCChhhhhhhhhHHHHHHHhcC---ceEEEEEeCC--CChHHHHHcCCCccc
Q 030222 76 AQETAVEDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVG---KLKCYKVNTD--ESPSIATRYGIRSIP 150 (181)
Q Consensus 76 ~~~~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~la~~~~~---~v~~~~vd~d--~~~~l~~~y~V~~~P 150 (181)
....+++.++|...+..+.+..+|+||++|||+|+.++|.++++++...+ -+.++.|||. +|..+|+.|+|+++|
T Consensus 39 D~ii~Ld~~tf~~~v~~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~~~P 118 (606)
T KOG1731|consen 39 DPIIELDVDTFNAAVFGSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVSGYP 118 (606)
T ss_pred CCeEEeehhhhHHHhcccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCCCCc
Confidence 56678899999999988888899999999999999999999999987765 3788899995 567899999999999
Q ss_pred EEEEEeCCeEE----EEEeCCCCHHHHHHHHHhh
Q 030222 151 TVMIFKNGEKK----DTVIGAVPKSTLTTSIEKF 180 (181)
Q Consensus 151 tl~i~~~G~~~----~~~~G~~~~~~l~~~i~~~ 180 (181)
++.+|..+-.- ..+.|.....++.+.+.+.
T Consensus 119 tlryf~~~~~~~~~G~~~~~~~~~~ei~~~l~~~ 152 (606)
T KOG1731|consen 119 TLRYFPPDSQNKTDGSDVSGPVIPSEIRDQLIRT 152 (606)
T ss_pred eeeecCCccccCcCCCcccCCcchhhHHHHHHHH
Confidence 99999533111 2344544455566655543
No 105
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=99.38 E-value=2.5e-12 Score=94.86 Aligned_cols=83 Identities=18% Similarity=0.276 Sum_probs=64.6
Q ss_pred CCCcEEEEEECCCChhhhhhhhhHHHHHHHhcC-ceEEEEEeCCC-------C----hHHHHH-cC--------------
Q 030222 93 SGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVG-KLKCYKVNTDE-------S----PSIATR-YG-------------- 145 (181)
Q Consensus 93 ~~~~vlV~F~a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~d~-------~----~~l~~~-y~-------------- 145 (181)
.|++|+|+||++||+ |+..+|.+++++++|.+ ++.++.|+.+. . ..++++ ++
T Consensus 21 ~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~f~~~~~~~~fp~~~d~d~~~~ 99 (152)
T cd00340 21 KGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCNQFGGQEPGSNEEIKEFCETNYGVTFPMFAKIDVNGE 99 (152)
T ss_pred CCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccCccccCCCCCHHHHHHHHHHhcCCCceeeeeEeccCC
Confidence 589999999999999 99999999999999974 58888887642 1 123332 32
Q ss_pred ---------CCccc------------EEEEEeCCeEEEEEeCCCCHHHHHHH
Q 030222 146 ---------IRSIP------------TVMIFKNGEKKDTVIGAVPKSTLTTS 176 (181)
Q Consensus 146 ---------V~~~P------------tl~i~~~G~~~~~~~G~~~~~~l~~~ 176 (181)
+..+| ++++.++|+++.++.|..+.++|.+.
T Consensus 100 ~~~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~i~~~~~G~~~~~~l~~~ 151 (152)
T cd00340 100 NAHPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVVKRFAPTTDPEELEKD 151 (152)
T ss_pred CCChHHHHHHhcCCCCCCCccccccEEEEECCCCcEEEEECCCCCHHHHHhc
Confidence 23466 46666899999999999999887654
No 106
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=99.34 E-value=1.3e-11 Score=92.54 Aligned_cols=89 Identities=20% Similarity=0.419 Sum_probs=71.6
Q ss_pred CCCcEEEEEECCCChhhhhhhhhHHHHHHHhcC-ceEEEEEeCCC-----------------------------ChHHHH
Q 030222 93 SGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVG-KLKCYKVNTDE-----------------------------SPSIAT 142 (181)
Q Consensus 93 ~~~~vlV~F~a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~d~-----------------------------~~~l~~ 142 (181)
.++++||+||++||+.|....+.+.++.++|++ ++.++.|+.|. +..+.+
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~ 103 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVAK 103 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHHH
Confidence 578999999999999999999999999999974 68899888754 224677
Q ss_pred HcCCCcccEEEEE-eCCeEEEEEe---------CCCCHHHHHHHHHhhC
Q 030222 143 RYGIRSIPTVMIF-KNGEKKDTVI---------GAVPKSTLTTSIEKFL 181 (181)
Q Consensus 143 ~y~V~~~Ptl~i~-~~G~~~~~~~---------G~~~~~~l~~~i~~~L 181 (181)
.|++..+|+++++ ++|+++.... +..+.+++.+.|+++|
T Consensus 104 ~~~v~~~P~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l 152 (171)
T cd02969 104 AYGAACTPDFFLFDPDGKLVYRGRIDDSRPGNDPPVTGRDLRAALDALL 152 (171)
T ss_pred HcCCCcCCcEEEECCCCeEEEeecccCCcccccccccHHHHHHHHHHHH
Confidence 8999999987777 6998886531 2345688998888764
No 107
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=99.34 E-value=6.4e-12 Score=85.96 Aligned_cols=86 Identities=45% Similarity=1.061 Sum_probs=74.6
Q ss_pred CCcEEEEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCC-CChHHHHHcC--CCcccEEEEEeCCeEEEEEeC--CC
Q 030222 94 GSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTD-ESPSIATRYG--IRSIPTVMIFKNGEKKDTVIG--AV 168 (181)
Q Consensus 94 ~~~vlV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d-~~~~l~~~y~--V~~~Ptl~i~~~G~~~~~~~G--~~ 168 (181)
++++++.||++||++|+.++|.+.++++++...+.+..+|.. .+.++...|+ +..+|+++++.+|+.+....+ ..
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 111 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENPDLAAEFGVAVRSIPTLLLFKDGKEVDRLVGGKVL 111 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCCChHHHHHHhhhhccCCeEEEEeCcchhhhhhhcccC
Confidence 779999999999999999999999999999877899999997 8899999999 999999999988887666666 56
Q ss_pred CHHHHHHHHHh
Q 030222 169 PKSTLTTSIEK 179 (181)
Q Consensus 169 ~~~~l~~~i~~ 179 (181)
+...+.....+
T Consensus 112 ~~~~~~~~~~~ 122 (127)
T COG0526 112 PKEALIDALGE 122 (127)
T ss_pred CHHHHHHHhcc
Confidence 77766665544
No 108
>smart00594 UAS UAS domain.
Probab=99.34 E-value=1.5e-11 Score=87.63 Aligned_cols=89 Identities=16% Similarity=0.208 Sum_probs=71.7
Q ss_pred HhhCCCcEEEEEECCCChhhhhhhhhH---HHHHHHhcCceEEEEEeCC--CChHHHHHcCCCcccEEEEE-eCC-----
Q 030222 90 VLDSGSPVLVEFWAPWCGPCRMIHPII---DELSKQYVGKLKCYKVNTD--ESPSIATRYGIRSIPTVMIF-KNG----- 158 (181)
Q Consensus 90 ~~~~~~~vlV~F~a~wC~~C~~~~p~l---~~la~~~~~~v~~~~vd~d--~~~~l~~~y~V~~~Ptl~i~-~~G----- 158 (181)
...++|+++|+|+++||++|+.+...+ .++.+.++.+..+..+|.+ +...++.+|+++++|+++++ .+|
T Consensus 23 Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~l~~~~g~~~~ 102 (122)
T smart00594 23 ASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEGQRVSQFYKLDSFPYVAIVDPRTGQRVI 102 (122)
T ss_pred HHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhHHHHHHhcCcCCCCEEEEEecCCCceeE
Confidence 455688999999999999999998865 5566667666777777765 44578999999999998888 455
Q ss_pred eEEEEEeCCCCHHHHHHHHH
Q 030222 159 EKKDTVIGAVPKSTLTTSIE 178 (181)
Q Consensus 159 ~~~~~~~G~~~~~~l~~~i~ 178 (181)
+++.++.|..+.++|...|+
T Consensus 103 ~~~~~~~G~~~~~~l~~~l~ 122 (122)
T smart00594 103 EWVGVVEGEISPEELMTFLE 122 (122)
T ss_pred EEeccccCCCCHHHHHHhhC
Confidence 46778999999999988763
No 109
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=99.32 E-value=5.2e-12 Score=90.58 Aligned_cols=80 Identities=13% Similarity=0.222 Sum_probs=56.3
Q ss_pred HHHhhCCCcEEEEEECCCChhhhhhhhhH---HHHHHHhcCceEEEEEeCCCCh-HHHHHcCCCcccEEEEE-eCCeEEE
Q 030222 88 SLVLDSGSPVLVEFWAPWCGPCRMIHPII---DELSKQYVGKLKCYKVNTDESP-SIATRYGIRSIPTVMIF-KNGEKKD 162 (181)
Q Consensus 88 ~~~~~~~~~vlV~F~a~wC~~C~~~~p~l---~~la~~~~~~v~~~~vd~d~~~-~l~~~y~V~~~Ptl~i~-~~G~~~~ 162 (181)
....+++|+++|+||++||++|+.+...+ .++.+..+.+...+.++.|... +.. ..| .++||++++ .+|+++.
T Consensus 17 ~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td~~~~-~~g-~~vPtivFld~~g~vi~ 94 (130)
T cd02960 17 YKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTDKNLS-PDG-QYVPRIMFVDPSLTVRA 94 (130)
T ss_pred HHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCCCCcC-ccC-cccCeEEEECCCCCCcc
Confidence 34566799999999999999999999876 4455555444544556654221 111 244 689998888 6999998
Q ss_pred EEeCCCC
Q 030222 163 TVIGAVP 169 (181)
Q Consensus 163 ~~~G~~~ 169 (181)
++.|..+
T Consensus 95 ~i~Gy~~ 101 (130)
T cd02960 95 DITGRYS 101 (130)
T ss_pred ccccccc
Confidence 8887643
No 110
>PTZ00256 glutathione peroxidase; Provisional
Probab=99.29 E-value=1.7e-11 Score=93.30 Aligned_cols=89 Identities=25% Similarity=0.301 Sum_probs=69.0
Q ss_pred CCCcE-EEEEECCCChhhhhhhhhHHHHHHHhcC-ceEEEEEeCCC-------C-hH---H-HHHc--------------
Q 030222 93 SGSPV-LVEFWAPWCGPCRMIHPIIDELSKQYVG-KLKCYKVNTDE-------S-PS---I-ATRY-------------- 144 (181)
Q Consensus 93 ~~~~v-lV~F~a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~d~-------~-~~---l-~~~y-------------- 144 (181)
.|+++ ++.+|++||++|+..+|.+++++++|.+ .+.++.|++|. + .+ . .+++
T Consensus 39 ~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~~~~~~~~~~~~~~~~f~~~~~~~~fpv~~d~d~~g 118 (183)
T PTZ00256 39 KGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCNQFMEQEPWDEPEIKEYVQKKFNVDFPLFQKIEVNG 118 (183)
T ss_pred CCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCCCceEEecCC
Confidence 57754 4566999999999999999999999975 48888887531 0 10 1 1121
Q ss_pred ----------------------CCCcccE----EEEEeCCeEEEEEeCCCCHHHHHHHHHhhC
Q 030222 145 ----------------------GIRSIPT----VMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 181 (181)
Q Consensus 145 ----------------------~V~~~Pt----l~i~~~G~~~~~~~G~~~~~~l~~~i~~~L 181 (181)
++.++|+ +++.++|+++.++.|..+.+.+.+.|+++|
T Consensus 119 ~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~~~g~~~~~~l~~~I~~ll 181 (183)
T PTZ00256 119 ENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKYFSPKVNPNEMIQDIEKLL 181 (183)
T ss_pred CCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEEECCCCCHHHHHHHHHHHh
Confidence 3457893 777799999999999999999999998875
No 111
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=99.28 E-value=1.2e-11 Score=106.61 Aligned_cols=95 Identities=16% Similarity=0.458 Sum_probs=77.0
Q ss_pred hhhHHHhhC-CCcEEEEEECCCChhhhhhhhhHH---HHHHHhcCceEEEEEeCCCC----hHHHHHcCCCcccEEEEEe
Q 030222 85 TWQSLVLDS-GSPVLVEFWAPWCGPCRMIHPIID---ELSKQYVGKLKCYKVNTDES----PSIATRYGIRSIPTVMIFK 156 (181)
Q Consensus 85 ~~~~~~~~~-~~~vlV~F~a~wC~~C~~~~p~l~---~la~~~~~~v~~~~vd~d~~----~~l~~~y~V~~~Ptl~i~~ 156 (181)
..++...+. +|+|+|+|||+||-.||++++..- +.+.+.+ ++..+++|..++ .++.++||+-++|++++|.
T Consensus 464 ~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~-~~vlLqaDvT~~~p~~~~lLk~~~~~G~P~~~ff~ 542 (569)
T COG4232 464 ELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQ-DVVLLQADVTANDPAITALLKRLGVFGVPTYLFFG 542 (569)
T ss_pred HHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcC-CeEEEEeeecCCCHHHHHHHHHcCCCCCCEEEEEC
Confidence 555544333 459999999999999999999763 4444555 488899988654 4678999999999999996
Q ss_pred -CCeEEEEEeCCCCHHHHHHHHHhh
Q 030222 157 -NGEKKDTVIGAVPKSTLTTSIEKF 180 (181)
Q Consensus 157 -~G~~~~~~~G~~~~~~l~~~i~~~ 180 (181)
+|++.....|.++.+.+.++|++.
T Consensus 543 ~~g~e~~~l~gf~~a~~~~~~l~~~ 567 (569)
T COG4232 543 PQGSEPEILTGFLTADAFLEHLERA 567 (569)
T ss_pred CCCCcCcCCcceecHHHHHHHHHHh
Confidence 888888899999999999999875
No 112
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=99.26 E-value=5.7e-11 Score=85.79 Aligned_cols=86 Identities=17% Similarity=0.276 Sum_probs=70.6
Q ss_pred CCCcEEEEEE-CCCChhhhhhhhhHHHHHHHhcC-ceEEEEEeCC---------------------CChHHHHHcCCCcc
Q 030222 93 SGSPVLVEFW-APWCGPCRMIHPIIDELSKQYVG-KLKCYKVNTD---------------------ESPSIATRYGIRSI 149 (181)
Q Consensus 93 ~~~~vlV~F~-a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~d---------------------~~~~l~~~y~V~~~ 149 (181)
.+++++|+|| +.||+.|....+.+.++++++.+ ++.++.|..| .+..+.+.||+...
T Consensus 22 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~ 101 (140)
T cd03017 22 RGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKAYGVWGE 101 (140)
T ss_pred CCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCccc
Confidence 4889999999 58999999999999999998864 4777777653 34468888999988
Q ss_pred ---------cEEEEE-eCCeEEEEEeCCCCHHHHHHHHH
Q 030222 150 ---------PTVMIF-KNGEKKDTVIGAVPKSTLTTSIE 178 (181)
Q Consensus 150 ---------Ptl~i~-~~G~~~~~~~G~~~~~~l~~~i~ 178 (181)
|+.+++ ++|+++..+.|..+...+.+.++
T Consensus 102 ~~~~~~~~~p~~~lid~~G~v~~~~~g~~~~~~~~~~~~ 140 (140)
T cd03017 102 KKKKYMGIERSTFLIDPDGKIVKVWRKVKPKGHAEEVLE 140 (140)
T ss_pred cccccCCcceeEEEECCCCEEEEEEecCCccchHHHHhC
Confidence 886666 68999999999998888877653
No 113
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=99.21 E-value=3.7e-11 Score=79.59 Aligned_cols=68 Identities=26% Similarity=0.506 Sum_probs=53.3
Q ss_pred HHHhhCCCcEEEEEECCCChhhhhhhhhH---HHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEe
Q 030222 88 SLVLDSGSPVLVEFWAPWCGPCRMIHPII---DELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFK 156 (181)
Q Consensus 88 ~~~~~~~~~vlV~F~a~wC~~C~~~~p~l---~~la~~~~~~v~~~~vd~d~~~~l~~~y~V~~~Ptl~i~~ 156 (181)
....+++|+++|+|+++||++|+.+...+ .++.+.+.+++.++.+|.++.......++ +++|++++++
T Consensus 11 ~~A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~~~~~-~~~P~~~~ld 81 (82)
T PF13899_consen 11 AEAKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNAQFDR-QGYPTFFFLD 81 (82)
T ss_dssp HHHHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHHHHHH-CSSSEEEEEE
T ss_pred HHHHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhHHhCC-ccCCEEEEeC
Confidence 33566799999999999999999999877 55666566779999999987665443222 7799998875
No 114
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=99.19 E-value=2.5e-10 Score=85.62 Aligned_cols=85 Identities=11% Similarity=0.187 Sum_probs=64.7
Q ss_pred CCCcEEEEEECCC-ChhhhhhhhhHHHHHHHhcCceEEEEEeCC-----------------------CChHHHHHcCCCc
Q 030222 93 SGSPVLVEFWAPW-CGPCRMIHPIIDELSKQYVGKLKCYKVNTD-----------------------ESPSIATRYGIRS 148 (181)
Q Consensus 93 ~~~~vlV~F~a~w-C~~C~~~~p~l~~la~~~~~~v~~~~vd~d-----------------------~~~~l~~~y~V~~ 148 (181)
.|++++|+||+.| |++|...++.++++++++. ++.++.|+.| ....+++.||+..
T Consensus 43 ~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~-~~~vv~vs~D~~~~~~~f~~~~~~~~~~~lsD~~~~~~~~~~gv~~ 121 (167)
T PRK00522 43 AGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD-NTVVLCISADLPFAQKRFCGAEGLENVITLSDFRDHSFGKAYGVAI 121 (167)
T ss_pred CCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC-CcEEEEEeCCCHHHHHHHHHhCCCCCceEeecCCccHHHHHhCCee
Confidence 5889999999999 9999999999999999985 5777777663 2236888999987
Q ss_pred cc---------EE-EEEeCCeEEEEEeCC-----CCHHHHHHHHH
Q 030222 149 IP---------TV-MIFKNGEKKDTVIGA-----VPKSTLTTSIE 178 (181)
Q Consensus 149 ~P---------tl-~i~~~G~~~~~~~G~-----~~~~~l~~~i~ 178 (181)
.| +. ++.++|+++..+.+. ...+++.+.|+
T Consensus 122 ~~~~~~g~~~r~tfvId~~G~I~~~~~~~~~~~~~~~~~~l~~l~ 166 (167)
T PRK00522 122 AEGPLKGLLARAVFVLDENNKVVYSELVPEITNEPDYDAALAALK 166 (167)
T ss_pred cccccCCceeeEEEEECCCCeEEEEEECCCcCCCCCHHHHHHHhh
Confidence 77 64 444799999987543 23455555443
No 115
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=99.16 E-value=2.7e-10 Score=72.81 Aligned_cols=69 Identities=17% Similarity=0.492 Sum_probs=54.4
Q ss_pred EEEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCCCChH----HHHHcCCCcccEEEEEeCCeEEEEEeCCCCHHHH
Q 030222 98 LVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPS----IATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTL 173 (181)
Q Consensus 98 lV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~----l~~~y~V~~~Ptl~i~~~G~~~~~~~G~~~~~~l 173 (181)
+..||++||++|+...+.+++. ++.+..+|+++++. +.+++++.++|+++++ |+. +.|. +.+.|
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~~------~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~--~~~---~~g~-~~~~i 69 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTSK------GIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIG--HKI---IVGF-DPEKL 69 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHHC------CCeEEEEeccCCHHHHHHHHHHhCCCcccEEEEC--CEE---EeeC-CHHHH
Confidence 5789999999999999887652 47888899987754 5577999999999874 654 5664 67788
Q ss_pred HHHHH
Q 030222 174 TTSIE 178 (181)
Q Consensus 174 ~~~i~ 178 (181)
.++|+
T Consensus 70 ~~~i~ 74 (74)
T TIGR02196 70 DQLLE 74 (74)
T ss_pred HHHhC
Confidence 88764
No 116
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=99.16 E-value=1.9e-10 Score=81.27 Aligned_cols=70 Identities=30% Similarity=0.727 Sum_probs=59.4
Q ss_pred CCCcEEEEEECC-CChhhhhhhhhHHHHHHHhcC-ceEEEEEeCC---------------------CChHHHHHcCCC--
Q 030222 93 SGSPVLVEFWAP-WCGPCRMIHPIIDELSKQYVG-KLKCYKVNTD---------------------ESPSIATRYGIR-- 147 (181)
Q Consensus 93 ~~~~vlV~F~a~-wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~d---------------------~~~~l~~~y~V~-- 147 (181)
.+++++|.||+. ||++|+...+.++++.++++. ++.++.|+.| .+..+.+.|++.
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 103 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELAKAFGIEDE 103 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHHHHTTCEET
T ss_pred CCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhhhccccccccCcchHHHHHcCCccc
Confidence 579999999999 999999999999999999985 5888888874 344688899999
Q ss_pred ----cccEEEEE-eCCeEEE
Q 030222 148 ----SIPTVMIF-KNGEKKD 162 (181)
Q Consensus 148 ----~~Ptl~i~-~~G~~~~ 162 (181)
.+|+++++ ++|++++
T Consensus 104 ~~~~~~p~~~lid~~g~I~~ 123 (124)
T PF00578_consen 104 KDTLALPAVFLIDPDGKIRY 123 (124)
T ss_dssp TTSEESEEEEEEETTSBEEE
T ss_pred cCCceEeEEEEECCCCEEEe
Confidence 99985555 6888775
No 117
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=99.15 E-value=1.4e-10 Score=85.06 Aligned_cols=70 Identities=26% Similarity=0.617 Sum_probs=60.7
Q ss_pred CCCcEEEEEECCCChhhhhhhhhHHHHHHHhcCc---eEEEEEeCCCCh-------------------------HHHHHc
Q 030222 93 SGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGK---LKCYKVNTDESP-------------------------SIATRY 144 (181)
Q Consensus 93 ~~~~vlV~F~a~wC~~C~~~~p~l~~la~~~~~~---v~~~~vd~d~~~-------------------------~l~~~y 144 (181)
.||.|.++|-|.||++|+.+.|.+.+++++..++ ..++.|+.|.+. ++.++|
T Consensus 32 ~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky 111 (157)
T KOG2501|consen 32 QGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKY 111 (157)
T ss_pred CCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhc
Confidence 5799999999999999999999999999998876 888888887543 578899
Q ss_pred CCCcccEEEEE-eCCeEEE
Q 030222 145 GIRSIPTVMIF-KNGEKKD 162 (181)
Q Consensus 145 ~V~~~Ptl~i~-~~G~~~~ 162 (181)
+|.++|++++. .+|+.+.
T Consensus 112 ~v~~iP~l~i~~~dG~~v~ 130 (157)
T KOG2501|consen 112 EVKGIPALVILKPDGTVVT 130 (157)
T ss_pred ccCcCceeEEecCCCCEeh
Confidence 99999998887 5887765
No 118
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=99.13 E-value=8.3e-10 Score=83.08 Aligned_cols=88 Identities=14% Similarity=0.262 Sum_probs=67.4
Q ss_pred CCCcEEEEEE-CCCChhhhhhhhhHHHHHHHhcC-ceEEEEEeCCC----------------------------ChHHHH
Q 030222 93 SGSPVLVEFW-APWCGPCRMIHPIIDELSKQYVG-KLKCYKVNTDE----------------------------SPSIAT 142 (181)
Q Consensus 93 ~~~~vlV~F~-a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~d~----------------------------~~~l~~ 142 (181)
.|++++|+|| +.||++|....+.++++++++.+ ++.++.|+.|. ...+++
T Consensus 28 ~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~ 107 (173)
T cd03015 28 KGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKISR 107 (173)
T ss_pred CCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCchhHHH
Confidence 5789999999 89999999999999999999964 47777666542 335677
Q ss_pred HcCCC------cccEEEEE-eCCeEEEEEeCCC----CHHHHHHHHHhh
Q 030222 143 RYGIR------SIPTVMIF-KNGEKKDTVIGAV----PKSTLTTSIEKF 180 (181)
Q Consensus 143 ~y~V~------~~Ptl~i~-~~G~~~~~~~G~~----~~~~l~~~i~~~ 180 (181)
.||+. .+|+.+++ ++|+++..+.+.. +.+++.+.|+++
T Consensus 108 ~~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~il~~l~~~ 156 (173)
T cd03015 108 DYGVLDEEEGVALRGTFIIDPEGIIRHITVNDLPVGRSVDETLRVLDAL 156 (173)
T ss_pred HhCCccccCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 88886 56775555 7999999886643 466777777654
No 119
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=99.13 E-value=3.7e-10 Score=82.07 Aligned_cols=84 Identities=11% Similarity=0.198 Sum_probs=64.5
Q ss_pred CCCcEEEEEECCC-ChhhhhhhhhHHHHHHHhcCceEEEEEeCCC----------------------C-hHHHHHcCCCc
Q 030222 93 SGSPVLVEFWAPW-CGPCRMIHPIIDELSKQYVGKLKCYKVNTDE----------------------S-PSIATRYGIRS 148 (181)
Q Consensus 93 ~~~~vlV~F~a~w-C~~C~~~~p~l~~la~~~~~~v~~~~vd~d~----------------------~-~~l~~~y~V~~ 148 (181)
.+++++|+||+.| |++|+..++.++++++++. ++.++.|+.|. . ..+++.||+..
T Consensus 25 ~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~-~~~vi~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~~ 103 (143)
T cd03014 25 AGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD-NTVVLTISADLPFAQKRWCGAEGVDNVTTLSDFRDHSFGKAYGVLI 103 (143)
T ss_pred CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC-CCEEEEEECCCHHHHHHHHHhcCCCCceEeecCcccHHHHHhCCee
Confidence 5889999999998 6999999999999999986 58888887752 1 45778888863
Q ss_pred ------ccEEEEE-eCCeEEEEEeCCC--CHHHHHHHH
Q 030222 149 ------IPTVMIF-KNGEKKDTVIGAV--PKSTLTTSI 177 (181)
Q Consensus 149 ------~Ptl~i~-~~G~~~~~~~G~~--~~~~l~~~i 177 (181)
.|+.+++ ++|+++....|.. ...++.+.|
T Consensus 104 ~~~~~~~~~~~iid~~G~I~~~~~~~~~~~~~~~~~~~ 141 (143)
T cd03014 104 KDLGLLARAVFVIDENGKVIYVELVPEITDEPDYEAAL 141 (143)
T ss_pred ccCCccceEEEEEcCCCeEEEEEECCCcccCCCHHHHh
Confidence 6775555 7999999988753 334455444
No 120
>PF13728 TraF: F plasmid transfer operon protein
Probab=99.12 E-value=1e-09 Score=85.59 Aligned_cols=83 Identities=22% Similarity=0.392 Sum_probs=70.6
Q ss_pred CCCcEEEEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCC-----------CChHHHHHcCCCcccEEEEEe-CC-e
Q 030222 93 SGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTD-----------ESPSIATRYGIRSIPTVMIFK-NG-E 159 (181)
Q Consensus 93 ~~~~vlV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d-----------~~~~l~~~y~V~~~Ptl~i~~-~G-~ 159 (181)
.++.-|++||...|++|+.+.|.+..++++|+ +.++.|+.| .+..+++++||..+|+++++. ++ +
T Consensus 119 a~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg--~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~~~~~ 196 (215)
T PF13728_consen 119 AQKYGLFFFYRSDCPYCQQQAPILQQFADKYG--FSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNPNTKK 196 (215)
T ss_pred hhCeEEEEEEcCCCchhHHHHHHHHHHHHHhC--CEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEECCCCe
Confidence 36788999999999999999999999999996 677777777 457899999999999977774 44 5
Q ss_pred EEEEEeCCCCHHHHHHHH
Q 030222 160 KKDTVIGAVPKSTLTTSI 177 (181)
Q Consensus 160 ~~~~~~G~~~~~~l~~~i 177 (181)
......|.++.++|.+.|
T Consensus 197 ~~pv~~G~~s~~~L~~ri 214 (215)
T PF13728_consen 197 WYPVSQGFMSLDELEDRI 214 (215)
T ss_pred EEEEeeecCCHHHHHHhh
Confidence 556677999999998765
No 121
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=99.10 E-value=1.2e-09 Score=80.43 Aligned_cols=86 Identities=15% Similarity=0.226 Sum_probs=66.5
Q ss_pred CCCcEEEEEECC-CChhhhhhhhhHHHHHHHhcC-ceEEEEEeCC---------------------CChHHHHHcCCCcc
Q 030222 93 SGSPVLVEFWAP-WCGPCRMIHPIIDELSKQYVG-KLKCYKVNTD---------------------ESPSIATRYGIRSI 149 (181)
Q Consensus 93 ~~~~vlV~F~a~-wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~d---------------------~~~~l~~~y~V~~~ 149 (181)
.+++++|+||+. ||+.|....+.+.++++++.+ ++.++.|+.| ....+.+.||+...
T Consensus 29 ~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~ 108 (154)
T PRK09437 29 QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKLSRFAEKELLNFTLLSDEDHQVAEQFGVWGE 108 (154)
T ss_pred CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCCeEEECCCchHHHHhCCCcc
Confidence 578999999976 688899999999999999864 4777777663 33467888998754
Q ss_pred ------------cE-EEEEeCCeEEEEEeCCCCHHHHHHHHH
Q 030222 150 ------------PT-VMIFKNGEKKDTVIGAVPKSTLTTSIE 178 (181)
Q Consensus 150 ------------Pt-l~i~~~G~~~~~~~G~~~~~~l~~~i~ 178 (181)
|+ +++.++|+++..+.|....+.+.+.++
T Consensus 109 ~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~~~~~~~ 150 (154)
T PRK09437 109 KKFMGKTYDGIHRISFLIDADGKIEHVFDKFKTSNHHDVVLD 150 (154)
T ss_pred cccccccccCcceEEEEECCCCEEEEEEcCCCcchhHHHHHH
Confidence 55 444479999999999877776555444
No 122
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=99.09 E-value=1.2e-09 Score=83.29 Aligned_cols=87 Identities=17% Similarity=0.203 Sum_probs=66.3
Q ss_pred CCCcEEEEEE-CCCChhhhhhhhhHHHHHHHhcC-ceEEEEEeCCC-------------------------ChHHHHHcC
Q 030222 93 SGSPVLVEFW-APWCGPCRMIHPIIDELSKQYVG-KLKCYKVNTDE-------------------------SPSIATRYG 145 (181)
Q Consensus 93 ~~~~vlV~F~-a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~d~-------------------------~~~l~~~y~ 145 (181)
.|+++||+|| +.||++|....+.++++.+++.+ ++.++.|+.|. +..+++.||
T Consensus 30 ~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~~g 109 (187)
T TIGR03137 30 KGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTRNFG 109 (187)
T ss_pred CCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHHHhC
Confidence 5889999999 99999999999999999998863 47777776543 346778999
Q ss_pred CC------cccE-EEEEeCCeEEEEEeCC----CCHHHHHHHHHh
Q 030222 146 IR------SIPT-VMIFKNGEKKDTVIGA----VPKSTLTTSIEK 179 (181)
Q Consensus 146 V~------~~Pt-l~i~~~G~~~~~~~G~----~~~~~l~~~i~~ 179 (181)
+. ..|+ +++.++|+++..+.+. ...+++.+.|+.
T Consensus 110 v~~~~~g~~~p~tfiID~~G~I~~~~~~~~~~~~~~~~ll~~l~~ 154 (187)
T TIGR03137 110 VLIEEAGLADRGTFVIDPEGVIQAVEITDNGIGRDASELLRKIKA 154 (187)
T ss_pred CcccCCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHH
Confidence 86 4686 4444799999876542 356777776654
No 123
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=99.08 E-value=9.4e-10 Score=71.28 Aligned_cols=70 Identities=23% Similarity=0.466 Sum_probs=52.5
Q ss_pred EEEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCCCChHHHHH-----cCCCcccEEEEEeCCeEEEEEeCCCCHHH
Q 030222 98 LVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATR-----YGIRSIPTVMIFKNGEKKDTVIGAVPKST 172 (181)
Q Consensus 98 lV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~-----y~V~~~Ptl~i~~~G~~~~~~~G~~~~~~ 172 (181)
++.||++||++|+.+.+.+.++. +.+-.+|+++++..... +++.++|++ ++.+|+.+. ....++
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~~------~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i-~~~~g~~l~----~~~~~~ 70 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKLG------AAYEWVDIEEDEGAADRVVSVNNGNMTVPTV-KFADGSFLT----NPSAAQ 70 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHcC------CceEEEeCcCCHhHHHHHHHHhCCCceeCEE-EECCCeEec----CCCHHH
Confidence 57899999999999999887763 44557888877766655 389999997 467886654 345566
Q ss_pred HHHHHH
Q 030222 173 LTTSIE 178 (181)
Q Consensus 173 l~~~i~ 178 (181)
+.+.|+
T Consensus 71 ~~~~l~ 76 (77)
T TIGR02200 71 VKAKLQ 76 (77)
T ss_pred HHHHhh
Confidence 777665
No 124
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=99.07 E-value=8.4e-10 Score=88.42 Aligned_cols=103 Identities=16% Similarity=0.384 Sum_probs=76.8
Q ss_pred ccceeeec-cchhhHHHhhC--CCcEEEEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccE
Q 030222 75 EAQETAVE-DATWQSLVLDS--GSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPT 151 (181)
Q Consensus 75 ~~~~~~l~-~~~~~~~~~~~--~~~vlV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~y~V~~~Pt 151 (181)
.+....++ .+.|...+... +..|||+||.+.++.|..+...|..||.+|+. ++|++|.....+ +..+|.++.+||
T Consensus 124 fG~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~-vKFvkI~a~~~~-~~~~f~~~~LPt 201 (265)
T PF02114_consen 124 FGEVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKYPE-VKFVKIRASKCP-ASENFPDKNLPT 201 (265)
T ss_dssp --SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TT-SEEEEEEECGCC-TTTTS-TTC-SE
T ss_pred CceEEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCc-eEEEEEehhccC-cccCCcccCCCE
Confidence 44555664 36676666544 34799999999999999999999999999994 999999998776 788999999999
Q ss_pred EEEEeCCeEEEEEeCCC-------CHHHHHHHHHh
Q 030222 152 VMIFKNGEKKDTVIGAV-------PKSTLTTSIEK 179 (181)
Q Consensus 152 l~i~~~G~~~~~~~G~~-------~~~~l~~~i~~ 179 (181)
|++|++|+.+..++|.. ..++|+.+|.+
T Consensus 202 llvYk~G~l~~~~V~l~~~~g~df~~~dlE~~L~~ 236 (265)
T PF02114_consen 202 LLVYKNGDLIGNFVGLTDLLGDDFFTEDLEAFLIE 236 (265)
T ss_dssp EEEEETTEEEEEECTGGGCT-TT--HHHHHHHHHT
T ss_pred EEEEECCEEEEeEEehHHhcCCCCCHHHHHHHHHH
Confidence 99999999999988752 24456666654
No 125
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=99.06 E-value=2.1e-09 Score=70.23 Aligned_cols=73 Identities=22% Similarity=0.529 Sum_probs=57.5
Q ss_pred EEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEeCCeEEEEEeC-CCCHHHHHHHH
Q 030222 99 VEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIG-AVPKSTLTTSI 177 (181)
Q Consensus 99 V~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~y~V~~~Ptl~i~~~G~~~~~~~G-~~~~~~l~~~i 177 (181)
|.+++++|++|......+++++++++ +.+-.+|..+.+++ .+|||.++|++++ ||+++ +.| ..+.++|.++|
T Consensus 3 I~v~~~~C~~C~~~~~~~~~~~~~~~--i~~ei~~~~~~~~~-~~ygv~~vPalvI--ng~~~--~~G~~p~~~el~~~l 75 (76)
T PF13192_consen 3 IKVFSPGCPYCPELVQLLKEAAEELG--IEVEIIDIEDFEEI-EKYGVMSVPALVI--NGKVV--FVGRVPSKEELKELL 75 (76)
T ss_dssp EEEECSSCTTHHHHHHHHHHHHHHTT--EEEEEEETTTHHHH-HHTT-SSSSEEEE--TTEEE--EESS--HHHHHHHHH
T ss_pred EEEeCCCCCCcHHHHHHHHHHHHhcC--CeEEEEEccCHHHH-HHcCCCCCCEEEE--CCEEE--EEecCCCHHHHHHHh
Confidence 44478899999999999999999985 66666677666666 9999999999977 78765 678 77889999888
Q ss_pred H
Q 030222 178 E 178 (181)
Q Consensus 178 ~ 178 (181)
+
T Consensus 76 ~ 76 (76)
T PF13192_consen 76 E 76 (76)
T ss_dssp H
T ss_pred C
Confidence 5
No 126
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=3.1e-09 Score=77.52 Aligned_cols=90 Identities=19% Similarity=0.368 Sum_probs=74.5
Q ss_pred HhhCCCcEEEEEECCCChhhhhhhhhH---HHHHHHhcCceEEEEEeCCC----------------ChHHHHHcCCCccc
Q 030222 90 VLDSGSPVLVEFWAPWCGPCRMIHPII---DELSKQYVGKLKCYKVNTDE----------------SPSIATRYGIRSIP 150 (181)
Q Consensus 90 ~~~~~~~vlV~F~a~wC~~C~~~~p~l---~~la~~~~~~v~~~~vd~d~----------------~~~l~~~y~V~~~P 150 (181)
+...++..+++|-.+.|.+|..+...+ .++.+-+.++..++.+++.. ..+|++.|+|+++|
T Consensus 38 i~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrstP 117 (182)
T COG2143 38 ISPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRSTP 117 (182)
T ss_pred cCccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccccCc
Confidence 344688999999999999999998877 55666666667777776621 24899999999999
Q ss_pred EEEEE-eCCeEEEEEeCCCCHHHHHHHHHh
Q 030222 151 TVMIF-KNGEKKDTVIGAVPKSTLTTSIEK 179 (181)
Q Consensus 151 tl~i~-~~G~~~~~~~G~~~~~~l~~~i~~ 179 (181)
|+++| ++|+.+....|+++.+++...++-
T Consensus 118 tfvFfdk~Gk~Il~lPGY~ppe~Fl~vlkY 147 (182)
T COG2143 118 TFVFFDKTGKTILELPGYMPPEQFLAVLKY 147 (182)
T ss_pred eEEEEcCCCCEEEecCCCCCHHHHHHHHHH
Confidence 99988 589999999999999999887764
No 127
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=99.03 E-value=2.7e-09 Score=77.85 Aligned_cols=86 Identities=13% Similarity=0.258 Sum_probs=63.8
Q ss_pred CC-CcEEEEEE-CCCChhhhhhhhhHHHHHHHhcC-ceEEEEEeC---------------------CCC--hHHHHHcCC
Q 030222 93 SG-SPVLVEFW-APWCGPCRMIHPIIDELSKQYVG-KLKCYKVNT---------------------DES--PSIATRYGI 146 (181)
Q Consensus 93 ~~-~~vlV~F~-a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~---------------------d~~--~~l~~~y~V 146 (181)
.+ ++++|.|| ++||+.|....|.+.++++++.+ ++.++.|+. |.. ..+.+.||+
T Consensus 26 ~g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~g~ 105 (149)
T cd03018 26 RGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLRAWAEENGLTFPLLSDFWPHGEVAKAYGV 105 (149)
T ss_pred cCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcCCCceEecCCCchhHHHHHhCC
Confidence 35 78888887 99999999999999999999964 477777765 333 567888998
Q ss_pred Cc----cc--E-EEEEeCCeEEEEEeCCC----CHHHHHHHHH
Q 030222 147 RS----IP--T-VMIFKNGEKKDTVIGAV----PKSTLTTSIE 178 (181)
Q Consensus 147 ~~----~P--t-l~i~~~G~~~~~~~G~~----~~~~l~~~i~ 178 (181)
.. +| + +++.++|+++..+.|.. +..++.+.|+
T Consensus 106 ~~~~~~~~~~~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~ 148 (149)
T cd03018 106 FDEDLGVAERAVFVIDRDGIIRYAWVSDDGEPRDLPDYDEALD 148 (149)
T ss_pred ccccCCCccceEEEECCCCEEEEEEecCCcccccchhHHHHhh
Confidence 73 33 5 44447999999988864 3555555554
No 128
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.03 E-value=8.8e-10 Score=82.94 Aligned_cols=88 Identities=28% Similarity=0.505 Sum_probs=78.2
Q ss_pred eeeccchhhHHHhhCCCcEEEEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEeCC
Q 030222 79 TAVEDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNG 158 (181)
Q Consensus 79 ~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~y~V~~~Ptl~i~~~G 158 (181)
.+.++..|-.....+. -|++.||-+.-..|+-+..+|+.+++.+-+ .+|++||....|-++.+++|+.+|++++|+||
T Consensus 70 ev~~Ekdf~~~~~kS~-kVVcHFY~~~f~RCKimDkhLe~LAk~h~e-TrFikvnae~~PFlv~kL~IkVLP~v~l~k~g 147 (211)
T KOG1672|consen 70 EVASEKDFFEEVKKSE-KVVCHFYRPEFFRCKIMDKHLEILAKRHVE-TRFIKVNAEKAPFLVTKLNIKVLPTVALFKNG 147 (211)
T ss_pred EeccHHHHHHHhhcCc-eEEEEEEcCCCcceehHHHHHHHHHHhccc-ceEEEEecccCceeeeeeeeeEeeeEEEEEcC
Confidence 3445777777665444 589999999999999999999999999985 99999999999999999999999999999999
Q ss_pred eEEEEEeCCC
Q 030222 159 EKKDTVIGAV 168 (181)
Q Consensus 159 ~~~~~~~G~~ 168 (181)
+.++++.|+.
T Consensus 148 ~~~D~iVGF~ 157 (211)
T KOG1672|consen 148 KTVDYVVGFT 157 (211)
T ss_pred EEEEEEeeHh
Confidence 9999999873
No 129
>PRK13190 putative peroxiredoxin; Provisional
Probab=99.03 E-value=4.9e-09 Score=81.00 Aligned_cols=88 Identities=13% Similarity=0.139 Sum_probs=66.5
Q ss_pred CCCcEEE-EEECCCChhhhhhhhhHHHHHHHhcC-ceEEEEEeCC---------------------------CChHHHHH
Q 030222 93 SGSPVLV-EFWAPWCGPCRMIHPIIDELSKQYVG-KLKCYKVNTD---------------------------ESPSIATR 143 (181)
Q Consensus 93 ~~~~vlV-~F~a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~d---------------------------~~~~l~~~ 143 (181)
.|+.++| +||++||+.|....+.+.++++++.+ ++.++.|+.| .+..+++.
T Consensus 26 ~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~~ 105 (202)
T PRK13190 26 KGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELARE 105 (202)
T ss_pred CCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHHHH
Confidence 5676655 68999999999999999999998864 4666666554 34467888
Q ss_pred cCCC------cccEEEEE-eCCeEEEEE----eCCCCHHHHHHHHHhh
Q 030222 144 YGIR------SIPTVMIF-KNGEKKDTV----IGAVPKSTLTTSIEKF 180 (181)
Q Consensus 144 y~V~------~~Ptl~i~-~~G~~~~~~----~G~~~~~~l~~~i~~~ 180 (181)
||+. .+|+.+++ ++|++.... .+.++.+++...|+.+
T Consensus 106 ygv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l~~l 153 (202)
T PRK13190 106 YNLIDENSGATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKAL 153 (202)
T ss_pred cCCccccCCcEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence 8984 58986666 688888765 3346888888888765
No 130
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=99.02 E-value=2.1e-09 Score=77.52 Aligned_cols=77 Identities=18% Similarity=0.341 Sum_probs=61.9
Q ss_pred CCCcEEEEEE-CCCChhhhhhhhhHHHHHHHhc-CceEEEEEeCC----------------------CChHHHHHcCCCc
Q 030222 93 SGSPVLVEFW-APWCGPCRMIHPIIDELSKQYV-GKLKCYKVNTD----------------------ESPSIATRYGIRS 148 (181)
Q Consensus 93 ~~~~vlV~F~-a~wC~~C~~~~p~l~~la~~~~-~~v~~~~vd~d----------------------~~~~l~~~y~V~~ 148 (181)
.+++++|+|| +.||+.|....+.+.++++++. +++.++.|..| .+..+.+.||+..
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~g~~~ 100 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSPFSHKAWAEKEGGLNFPLLSDPDGEFAKAYGVLI 100 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcccCCCceEEECCChHHHHHcCCcc
Confidence 5889999999 7899999999999999999984 35777777663 3346778888887
Q ss_pred cc---------E-EEEEeCCeEEEEEeCCCC
Q 030222 149 IP---------T-VMIFKNGEKKDTVIGAVP 169 (181)
Q Consensus 149 ~P---------t-l~i~~~G~~~~~~~G~~~ 169 (181)
.| + +++.++|+++..+.|...
T Consensus 101 ~~~~~~~~~~p~~~lid~~g~i~~~~~~~~~ 131 (140)
T cd02971 101 EKSAGGGLAARATFIIDPDGKIRYVEVEPLP 131 (140)
T ss_pred ccccccCceeEEEEEECCCCcEEEEEecCCC
Confidence 76 5 445568999999998865
No 131
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=99.01 E-value=3.9e-09 Score=76.72 Aligned_cols=72 Identities=15% Similarity=0.244 Sum_probs=55.5
Q ss_pred CcEEEEEECCCChhhhhhhhhHHHHHHHhcC-ceEEEEEeCC---------------------CChHHHHHcCCC-----
Q 030222 95 SPVLVEFWAPWCGPCRMIHPIIDELSKQYVG-KLKCYKVNTD---------------------ESPSIATRYGIR----- 147 (181)
Q Consensus 95 ~~vlV~F~a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~d---------------------~~~~l~~~y~V~----- 147 (181)
..++++||+.||++|+..++.|+++.+++.+ ++.++.|+.| .+..+.+.||+.
T Consensus 25 ~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~g~~~~~~~ 104 (149)
T cd02970 25 PVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESPEKLEAFDKGKFLPFPVYADPDRKLYRALGLVRSLPW 104 (149)
T ss_pred CEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHHHHHHHHHhcCCCCeEEECCchhHHHHcCceecCcH
Confidence 3445555699999999999999999999963 4888888763 445678888884
Q ss_pred ------------------------cccEEEEE-eCCeEEEEEeC
Q 030222 148 ------------------------SIPTVMIF-KNGEKKDTVIG 166 (181)
Q Consensus 148 ------------------------~~Ptl~i~-~~G~~~~~~~G 166 (181)
.+|+.+++ ++|+++..+.|
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~fvid~~g~i~~~~~~ 148 (149)
T cd02970 105 SNTPRALWKNAAIGFRGNDEGDGLQLPGVFVIGPDGTILFAHVD 148 (149)
T ss_pred HHHHHHHhhCcccccccCCCCcccccceEEEECCCCeEEEEecC
Confidence 78975555 68888887765
No 132
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=99.00 E-value=1.5e-09 Score=82.49 Aligned_cols=90 Identities=13% Similarity=0.249 Sum_probs=68.0
Q ss_pred hhCCCcEEEEEECCCChhhhhhhhhHHHHHHHhcC-ceEEEEEeCCC--------C---hHHHH-HcCCC----------
Q 030222 91 LDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVG-KLKCYKVNTDE--------S---PSIAT-RYGIR---------- 147 (181)
Q Consensus 91 ~~~~~~vlV~F~a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~d~--------~---~~l~~-~y~V~---------- 147 (181)
.-.|+++||.|||+||++|+ ..+.|++++++|.+ .+.++.+.+++ . .++++ +|++.
T Consensus 22 ~~~GKvvLVvf~AS~C~~~~-q~~~L~~L~~~y~~~gl~Vlg~p~nqf~~qe~~~~~ei~~f~~~~~g~~Fpv~~k~dvn 100 (183)
T PRK10606 22 KYAGNVLLIVNVASKCGLTP-QYEQLENIQKAWADQGFVVLGFPCNQFLGQEPGSDEEIKTYCRTTWGVTFPMFSKIEVN 100 (183)
T ss_pred HhCCCEEEEEEEeCCCCCcH-HHHHHHHHHHHHhhCCeEEEEeeccccccCCCCCHHHHHHHHHHccCCCceeEEEEccC
Confidence 34589999999999999997 58899999999975 48888887742 1 23343 56541
Q ss_pred -------------ccc--------------------------------EEEEEeCCeEEEEEeCCCCHHH--HHHHHHhh
Q 030222 148 -------------SIP--------------------------------TVMIFKNGEKKDTVIGAVPKST--LTTSIEKF 180 (181)
Q Consensus 148 -------------~~P--------------------------------tl~i~~~G~~~~~~~G~~~~~~--l~~~i~~~ 180 (181)
..| -+++.++|+++.++.......+ |++.|+++
T Consensus 101 G~~~~pl~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~WNF~KFLv~~~G~vv~r~~~~~~p~~~~i~~~i~~~ 180 (183)
T PRK10606 101 GEGRHPLYQKLIAAAPTAVAPEESGFYARMVSKGRAPLYPDDILWNFEKFLVGRDGQVIQRFSPDMTPEDPIVMESIKLA 180 (183)
T ss_pred CCCCCHHHHHHHHhCCCCcCccccchhhhhhccccccccCCcccccCEEEEECCCCcEEEEECCCCCCCHHHHHHHHHHH
Confidence 233 4667789999999987766555 88999887
Q ss_pred C
Q 030222 181 L 181 (181)
Q Consensus 181 L 181 (181)
|
T Consensus 181 l 181 (183)
T PRK10606 181 L 181 (183)
T ss_pred h
Confidence 5
No 133
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=99.00 E-value=2.2e-09 Score=65.35 Aligned_cols=60 Identities=38% Similarity=0.867 Sum_probs=52.4
Q ss_pred EEEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCCCChHHHH---HcCCCcccEEEEEeCC
Q 030222 98 LVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIAT---RYGIRSIPTVMIFKNG 158 (181)
Q Consensus 98 lV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~---~y~V~~~Ptl~i~~~G 158 (181)
++.||..||++|+.+.+.+.++ +....++.+..++.+...+... .+++..+|+++++.+|
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL-ALLNKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH-HhhCCCcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeCC
Confidence 5789999999999999999998 5555579999999998887665 8999999999999876
No 134
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=98.99 E-value=7.8e-09 Score=78.94 Aligned_cols=88 Identities=15% Similarity=0.206 Sum_probs=67.2
Q ss_pred CCCcEEEEEE-CCCChhhhhhhhhHHHHHHHhcC-ceEEEEEeCC-------------------------CChHHHHHcC
Q 030222 93 SGSPVLVEFW-APWCGPCRMIHPIIDELSKQYVG-KLKCYKVNTD-------------------------ESPSIATRYG 145 (181)
Q Consensus 93 ~~~~vlV~F~-a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~d-------------------------~~~~l~~~y~ 145 (181)
.|++++++|| +.||+.|....+.+.++++++.+ ++.++.|+.| .+..+++.||
T Consensus 30 ~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~yg 109 (187)
T PRK10382 30 EGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFD 109 (187)
T ss_pred CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHHcC
Confidence 5789999999 99999999999999999999963 4666666653 3457889999
Q ss_pred C----Ccc--cEEEEE-eCCeEEEEEeCC----CCHHHHHHHHHhh
Q 030222 146 I----RSI--PTVMIF-KNGEKKDTVIGA----VPKSTLTTSIEKF 180 (181)
Q Consensus 146 V----~~~--Ptl~i~-~~G~~~~~~~G~----~~~~~l~~~i~~~ 180 (181)
+ .++ |+.+++ ++|++++.+... ...+++.+.|+.+
T Consensus 110 v~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l~al 155 (187)
T PRK10382 110 NMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAA 155 (187)
T ss_pred CCcccCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHhh
Confidence 8 356 874444 699998876432 4677787777653
No 135
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=98.97 E-value=3e-09 Score=76.91 Aligned_cols=44 Identities=25% Similarity=0.368 Sum_probs=38.8
Q ss_pred CCCcEEEEEECCCChh-hhhhhhhHHHHHHHhcC----ceEEEEEeCCC
Q 030222 93 SGSPVLVEFWAPWCGP-CRMIHPIIDELSKQYVG----KLKCYKVNTDE 136 (181)
Q Consensus 93 ~~~~vlV~F~a~wC~~-C~~~~p~l~~la~~~~~----~v~~~~vd~d~ 136 (181)
.+++++|.||++||++ |....+.++++++++.+ ++.++.|+.|.
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~ 69 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDP 69 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECC
Confidence 5789999999999998 99999999999999975 38888888753
No 136
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.96 E-value=4.3e-09 Score=69.36 Aligned_cols=61 Identities=21% Similarity=0.418 Sum_probs=47.7
Q ss_pred EEEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCCCChH-----HHHHcCCCcccEEEEEeCCeEEE
Q 030222 98 LVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPS-----IATRYGIRSIPTVMIFKNGEKKD 162 (181)
Q Consensus 98 lV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~-----l~~~y~V~~~Ptl~i~~~G~~~~ 162 (181)
++.|+++||++|+.+.+.++++. .++.+.++.+|.+++.. +.+.+|+..+|++++ +|+.+.
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i--~g~~ig 66 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFI--NGKFIG 66 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEE--CCEEEc
Confidence 47899999999999999999976 33347788888775542 667789999999854 776543
No 137
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=98.95 E-value=1.4e-09 Score=78.30 Aligned_cols=96 Identities=20% Similarity=0.408 Sum_probs=58.5
Q ss_pred eccchhhHHHhhCCCcEEEEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCCCChHHHHHc---CCCcccEEEEE-e
Q 030222 81 VEDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRY---GIRSIPTVMIF-K 156 (181)
Q Consensus 81 l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~y---~V~~~Ptl~i~-~ 156 (181)
++++....+....++.-++.|..+|||.|....|.+.++++..+ ++.+-.+.-|+++++.++| |.+.+|+++++ +
T Consensus 28 l~~~~~~~l~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p-~i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~~d~ 106 (129)
T PF14595_consen 28 LSEEQIEKLKSIQKPYNILVITETWCGDCARNVPVLAKIAEANP-NIEVRIILRDENKELMDQYLTNGGRSIPTFIFLDK 106 (129)
T ss_dssp --HHHHHHHHT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-T-TEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-T
T ss_pred CCHHHHHHHHhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCC-CCeEEEEEecCChhHHHHHHhCCCeecCEEEEEcC
Confidence 34444444444456678888999999999999999999999976 5777777778888877765 68999999988 4
Q ss_pred CCeEEEEEeCCCCHHHHHHHHHh
Q 030222 157 NGEKKDTVIGAVPKSTLTTSIEK 179 (181)
Q Consensus 157 ~G~~~~~~~G~~~~~~l~~~i~~ 179 (181)
+|++++++.. ++.. +.+.+++
T Consensus 107 ~~~~lg~wge-rP~~-~~~~~~~ 127 (129)
T PF14595_consen 107 DGKELGRWGE-RPKE-VQELVDE 127 (129)
T ss_dssp T--EEEEEES-S-HH-HH-----
T ss_pred CCCEeEEEcC-CCHH-Hhhcccc
Confidence 6788887764 3443 4444443
No 138
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=98.94 E-value=1.1e-08 Score=81.32 Aligned_cols=86 Identities=17% Similarity=0.308 Sum_probs=71.8
Q ss_pred CCCcEEEEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCCCC-----------hHHHHHcCCCcccEEEEEe-C-Ce
Q 030222 93 SGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDES-----------PSIATRYGIRSIPTVMIFK-N-GE 159 (181)
Q Consensus 93 ~~~~vlV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~-----------~~l~~~y~V~~~Ptl~i~~-~-G~ 159 (181)
.++.-+++||...|++|+.+.|.+..++++|+ +.++.|+.|.. ..+++++||..+|++++.. + ++
T Consensus 149 a~~~gL~fFy~~~C~~C~~~apil~~fa~~yg--i~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~t~~ 226 (256)
T TIGR02739 149 SQSYGLFFFYRGKSPISQKMAPVIQAFAKEYG--ISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPKSQK 226 (256)
T ss_pred HhceeEEEEECCCCchhHHHHHHHHHHHHHhC--CeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECCCCc
Confidence 35688999999999999999999999999997 67777777754 4589999999999977774 4 55
Q ss_pred EEEEEeCCCCHHHHHHHHHhh
Q 030222 160 KKDTVIGAVPKSTLTTSIEKF 180 (181)
Q Consensus 160 ~~~~~~G~~~~~~l~~~i~~~ 180 (181)
....-.|.++.++|.+.|...
T Consensus 227 ~~pv~~G~iS~deL~~Ri~~v 247 (256)
T TIGR02739 227 MSPLAYGFISQDELKERILNV 247 (256)
T ss_pred EEEEeeccCCHHHHHHHHHHH
Confidence 555677999999999988654
No 139
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=98.94 E-value=5.9e-09 Score=77.41 Aligned_cols=82 Identities=17% Similarity=0.357 Sum_probs=58.0
Q ss_pred cchhhHHHhhCCCcEEEEEECCCChhhhhhhh-hH--HHHHHHhcCceEEEEEeCCCChHHHHHc--------CCCcccE
Q 030222 83 DATWQSLVLDSGSPVLVEFWAPWCGPCRMIHP-II--DELSKQYVGKLKCYKVNTDESPSIATRY--------GIRSIPT 151 (181)
Q Consensus 83 ~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p-~l--~~la~~~~~~v~~~~vd~d~~~~l~~~y--------~V~~~Pt 151 (181)
++.++. ..+++|+++|.++.+||..|+.|.. .+ .++++-++.+..-++||.++.+++...| |..++|+
T Consensus 27 ~ea~~~-Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~Pdid~~y~~~~~~~~~~gGwPl 105 (163)
T PF03190_consen 27 EEALEK-AKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREERPDIDKIYMNAVQAMSGSGGWPL 105 (163)
T ss_dssp HHHHHH-HHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-HHHHHHHHHHHHHHHS---SSE
T ss_pred HHHHHH-HHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccCccHHHHHHHHHHHhcCCCCCCc
Confidence 344544 6778999999999999999999986 33 5678888877888999999999999998 8899998
Q ss_pred EEEE-eCCeEEEEEe
Q 030222 152 VMIF-KNGEKKDTVI 165 (181)
Q Consensus 152 l~i~-~~G~~~~~~~ 165 (181)
.+++ .+|+++...+
T Consensus 106 ~vfltPdg~p~~~~t 120 (163)
T PF03190_consen 106 TVFLTPDGKPFFGGT 120 (163)
T ss_dssp EEEE-TTS-EEEEES
T ss_pred eEEECCCCCeeeeee
Confidence 5555 7999887543
No 140
>PRK15000 peroxidase; Provisional
Probab=98.93 E-value=1.3e-08 Score=78.56 Aligned_cols=87 Identities=16% Similarity=0.316 Sum_probs=67.5
Q ss_pred CCCcEEEEEEC-CCChhhhhhhhhHHHHHHHhcC-ceEEEEEeCC----------------------------CChHHHH
Q 030222 93 SGSPVLVEFWA-PWCGPCRMIHPIIDELSKQYVG-KLKCYKVNTD----------------------------ESPSIAT 142 (181)
Q Consensus 93 ~~~~vlV~F~a-~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~d----------------------------~~~~l~~ 142 (181)
.+++++|+||. .||+.|....+.+.++++++.+ ++.++.|+.| .+..+++
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~ 112 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQK 112 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHHH
Confidence 57899999999 5999999999999999999974 4677766664 2335777
Q ss_pred HcCCC------cccEEEEE-eCCeEEEEEeCC----CCHHHHHHHHHh
Q 030222 143 RYGIR------SIPTVMIF-KNGEKKDTVIGA----VPKSTLTTSIEK 179 (181)
Q Consensus 143 ~y~V~------~~Ptl~i~-~~G~~~~~~~G~----~~~~~l~~~i~~ 179 (181)
.||+. .+|+.+++ ++|++...+.|. ++.+++...|+.
T Consensus 113 ~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~gr~~~eilr~l~a 160 (200)
T PRK15000 113 AYGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRMVDA 160 (200)
T ss_pred HcCCccCCCCcEEeEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHH
Confidence 88987 78975555 699999887764 456777776654
No 141
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=2.5e-09 Score=81.94 Aligned_cols=84 Identities=27% Similarity=0.465 Sum_probs=71.0
Q ss_pred ccchhhHHHhhC-CCcEEEEEECCCChhhhhhhhhHHHHHHHhcC-ceEEEEEeCCCChHHHHHcCC------CcccEEE
Q 030222 82 EDATWQSLVLDS-GSPVLVEFWAPWCGPCRMIHPIIDELSKQYVG-KLKCYKVNTDESPSIATRYGI------RSIPTVM 153 (181)
Q Consensus 82 ~~~~~~~~~~~~-~~~vlV~F~a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~d~~~~l~~~y~V------~~~Ptl~ 153 (181)
+.+.++..+..+ .+.++|.||+.|.+.|+...|.+.++..+|.. .++|.+||+-..++.+.+|+| +..||++
T Consensus 131 ~~q~~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrfpd~a~kfris~s~~srQLPT~i 210 (265)
T KOG0914|consen 131 NMQLEDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRFPDVAAKFRISLSPGSRQLPTYI 210 (265)
T ss_pred chhhHHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccCcChHHheeeccCcccccCCeEE
Confidence 444455444333 45899999999999999999999999999975 599999999999999999988 4799999
Q ss_pred EEeCCeEEEEEe
Q 030222 154 IFKNGEKKDTVI 165 (181)
Q Consensus 154 i~~~G~~~~~~~ 165 (181)
+|++|+++.|..
T Consensus 211 lFq~gkE~~RrP 222 (265)
T KOG0914|consen 211 LFQKGKEVSRRP 222 (265)
T ss_pred EEccchhhhcCc
Confidence 999999887643
No 142
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=98.90 E-value=1.8e-08 Score=77.80 Aligned_cols=85 Identities=11% Similarity=0.138 Sum_probs=64.2
Q ss_pred cEEEEEECCCChhhhhhhhhHHHHHHHhcC-ceEEEEEeCCC---------------------------ChHHHHHcCCC
Q 030222 96 PVLVEFWAPWCGPCRMIHPIIDELSKQYVG-KLKCYKVNTDE---------------------------SPSIATRYGIR 147 (181)
Q Consensus 96 ~vlV~F~a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~d~---------------------------~~~l~~~y~V~ 147 (181)
.+|++||++||+.|....+.+.++++++.+ ++.++.|+.|. +..+++.||+.
T Consensus 28 vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~~~~~~~~~~i~~~~~~~~~fpil~D~~~~ia~~yg~~ 107 (203)
T cd03016 28 GILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSVESHIKWIEDIEEYTGVEIPFPIIADPDREVAKLLGMI 107 (203)
T ss_pred EEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceeEEECchHHHHHHcCCc
Confidence 456689999999999999999999999964 47888877653 34678889986
Q ss_pred ----ccc----E-EEEEeCCeEEEEEeCC----CCHHHHHHHHHhh
Q 030222 148 ----SIP----T-VMIFKNGEKKDTVIGA----VPKSTLTTSIEKF 180 (181)
Q Consensus 148 ----~~P----t-l~i~~~G~~~~~~~G~----~~~~~l~~~i~~~ 180 (181)
+.| + ++|.++|++...+.+. +..+++.+.|+++
T Consensus 108 ~~~~~~~~~~r~~fiID~~G~I~~~~~~~~~~gr~~~ell~~l~~l 153 (203)
T cd03016 108 DPDAGSTLTVRAVFIIDPDKKIRLILYYPATTGRNFDEILRVVDAL 153 (203)
T ss_pred cccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHH
Confidence 334 3 5555799998877653 4567788777654
No 143
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=98.89 E-value=2.6e-08 Score=78.90 Aligned_cols=85 Identities=18% Similarity=0.287 Sum_probs=70.1
Q ss_pred CCcEEEEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCCC-----------ChHHHHHcCCCcccEEEEEe--CCeE
Q 030222 94 GSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDE-----------SPSIATRYGIRSIPTVMIFK--NGEK 160 (181)
Q Consensus 94 ~~~vlV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~-----------~~~l~~~y~V~~~Ptl~i~~--~G~~ 160 (181)
++.-|++||...|++|+.+.|.+..++++|+ +.++.|+.|. +...++++||..+|+++++. .++.
T Consensus 143 ~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg--~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~t~~~ 220 (248)
T PRK13703 143 EHYGLMFFYRGQDPIDGQLAQVINDFRDTYG--LSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPKSGSV 220 (248)
T ss_pred hcceEEEEECCCCchhHHHHHHHHHHHHHhC--CeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECCCCcE
Confidence 5688999999999999999999999999997 5666666653 33477899999999977774 4466
Q ss_pred EEEEeCCCCHHHHHHHHHhh
Q 030222 161 KDTVIGAVPKSTLTTSIEKF 180 (181)
Q Consensus 161 ~~~~~G~~~~~~l~~~i~~~ 180 (181)
.-.-.|.++.++|.+.|...
T Consensus 221 ~pv~~G~iS~deL~~Ri~~v 240 (248)
T PRK13703 221 RPLSYGFITQDDLAKRFLNV 240 (248)
T ss_pred EEEeeccCCHHHHHHHHHHH
Confidence 66777999999999988654
No 144
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=98.85 E-value=2e-08 Score=70.97 Aligned_cols=75 Identities=25% Similarity=0.563 Sum_probs=52.4
Q ss_pred hhhHHHh---hCCCcEEEEEEC-------CCChhhhhhhhhHHHHHHHhcCceEEEEEeC-------CCChHHHH--HcC
Q 030222 85 TWQSLVL---DSGSPVLVEFWA-------PWCGPCRMIHPIIDELSKQYVGKLKCYKVNT-------DESPSIAT--RYG 145 (181)
Q Consensus 85 ~~~~~~~---~~~~~vlV~F~a-------~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~-------d~~~~l~~--~y~ 145 (181)
+|.+.+. .++++++|+|++ +|||.|+...|.+++..+..+++..++.+.+ |.+..+.. +++
T Consensus 7 ~~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~ 86 (119)
T PF06110_consen 7 EFEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDPDLK 86 (119)
T ss_dssp HHHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--CC-
T ss_pred HHHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEcceee
Confidence 4444443 346799999986 4999999999999998888777788888876 33334555 699
Q ss_pred CCcccEEEEEeCCe
Q 030222 146 IRSIPTVMIFKNGE 159 (181)
Q Consensus 146 V~~~Ptl~i~~~G~ 159 (181)
++++|||+-+..++
T Consensus 87 l~~IPTLi~~~~~~ 100 (119)
T PF06110_consen 87 LKGIPTLIRWETGE 100 (119)
T ss_dssp --SSSEEEECTSS-
T ss_pred eeecceEEEECCCC
Confidence 99999999997663
No 145
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=98.84 E-value=5.9e-08 Score=77.58 Aligned_cols=88 Identities=17% Similarity=0.188 Sum_probs=65.4
Q ss_pred CCCcEEEEEE-CCCChhhhhhhhhHHHHHHHhcC-ceEEEEEeCCC----------------------------ChHHHH
Q 030222 93 SGSPVLVEFW-APWCGPCRMIHPIIDELSKQYVG-KLKCYKVNTDE----------------------------SPSIAT 142 (181)
Q Consensus 93 ~~~~vlV~F~-a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~d~----------------------------~~~l~~ 142 (181)
.++++|++|| +.||+.|..+.+.+.++++++.+ ++.++.|..|. +..+++
T Consensus 97 kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~iak 176 (261)
T PTZ00137 97 KDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREVSK 176 (261)
T ss_pred CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHHHH
Confidence 4667777777 89999999999999999999964 36677666643 346888
Q ss_pred HcCCC-----cccEEEEE-eCCeEEEEEeC----CCCHHHHHHHHHhh
Q 030222 143 RYGIR-----SIPTVMIF-KNGEKKDTVIG----AVPKSTLTTSIEKF 180 (181)
Q Consensus 143 ~y~V~-----~~Ptl~i~-~~G~~~~~~~G----~~~~~~l~~~i~~~ 180 (181)
.||+. ..|+.+++ ++|+++..+.. ....+++...|+.+
T Consensus 177 ayGv~~~~g~a~R~tFIID~dG~I~~~~~~~~~~gr~v~eiLr~l~al 224 (261)
T PTZ00137 177 SFGLLRDEGFSHRASVLVDKAGVVKHVAVYDLGLGRSVDETLRLFDAV 224 (261)
T ss_pred HcCCCCcCCceecEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence 99985 58975555 69999886632 24667777776543
No 146
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=98.81 E-value=3.1e-08 Score=78.07 Aligned_cols=81 Identities=14% Similarity=0.354 Sum_probs=62.4
Q ss_pred CCCcEEEEEECCCChhhhhhhhhHHHHHHHhcCceEEEEE----------------------------------------
Q 030222 93 SGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKV---------------------------------------- 132 (181)
Q Consensus 93 ~~~~vlV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~v---------------------------------------- 132 (181)
+++.+++.|..+.||+|+++.+.+.++.+. .+.+..+
T Consensus 106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~~---~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~~ 182 (232)
T PRK10877 106 QEKHVITVFTDITCGYCHKLHEQMKDYNAL---GITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSPA 182 (232)
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHhcC---CeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCcc
Confidence 467889999999999999999998887441 2333221
Q ss_pred ----eCCCChHHHHHcCCCcccEEEEEeCCeEEEEEeCCCCHHHHHHHHHhh
Q 030222 133 ----NTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKF 180 (181)
Q Consensus 133 ----d~d~~~~l~~~y~V~~~Ptl~i~~~G~~~~~~~G~~~~~~l~~~i~~~ 180 (181)
+++++..+++++||+++||++ +.||+.+ .|..+.++|.++|++.
T Consensus 183 ~c~~~v~~~~~la~~lgi~gTPtiv-~~~G~~~---~G~~~~~~L~~~l~~~ 230 (232)
T PRK10877 183 SCDVDIADHYALGVQFGVQGTPAIV-LSNGTLV---PGYQGPKEMKAFLDEH 230 (232)
T ss_pred cccchHHHhHHHHHHcCCccccEEE-EcCCeEe---eCCCCHHHHHHHHHHc
Confidence 112344688999999999998 6788865 7999999999999863
No 147
>PRK13189 peroxiredoxin; Provisional
Probab=98.81 E-value=6.5e-08 Score=75.79 Aligned_cols=88 Identities=14% Similarity=0.206 Sum_probs=64.5
Q ss_pred CCC-cEEEEEECCCChhhhhhhhhHHHHHHHhcC-ceEEEEEeCC---------------------------CChHHHHH
Q 030222 93 SGS-PVLVEFWAPWCGPCRMIHPIIDELSKQYVG-KLKCYKVNTD---------------------------ESPSIATR 143 (181)
Q Consensus 93 ~~~-~vlV~F~a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~d---------------------------~~~~l~~~ 143 (181)
.|+ .+|++||++||+.|....+.++++++++.+ ++.++.|++| .+..+++.
T Consensus 34 ~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia~~ 113 (222)
T PRK13189 34 KGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIAKK 113 (222)
T ss_pred CCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHHHH
Confidence 466 455678899999999999999999999864 4677766654 23457788
Q ss_pred cCCC-------cccEEEEE-eCCeEEEEEeC----CCCHHHHHHHHHhh
Q 030222 144 YGIR-------SIPTVMIF-KNGEKKDTVIG----AVPKSTLTTSIEKF 180 (181)
Q Consensus 144 y~V~-------~~Ptl~i~-~~G~~~~~~~G----~~~~~~l~~~i~~~ 180 (181)
||+. .+|+.+++ ++|++.....+ .+..+++...|+.+
T Consensus 114 ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al 162 (222)
T PRK13189 114 LGMISPGKGTNTVRAVFIIDPKGIIRAILYYPQEVGRNMDEILRLVKAL 162 (222)
T ss_pred hCCCccccCCCceeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 8875 46865555 69998877653 34567777777654
No 148
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=98.80 E-value=5.6e-08 Score=64.68 Aligned_cols=75 Identities=13% Similarity=0.307 Sum_probs=58.1
Q ss_pred EEEEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCCCCh----HHHHHcC--CCcccEEEEEeCCeEEEEEeCCCCH
Q 030222 97 VLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESP----SIATRYG--IRSIPTVMIFKNGEKKDTVIGAVPK 170 (181)
Q Consensus 97 vlV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~----~l~~~y~--V~~~Ptl~i~~~G~~~~~~~G~~~~ 170 (181)
-++.|+.+||++|+.....|+++..++. ++.+..+|+++++ ++.+.++ +..+|++++ +|+.+. ..
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~-~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~ifi--~g~~ig------g~ 72 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERD-DFDYRYVDIHAEGISKADLEKTVGKPVETVPQIFV--DQKHIG------GC 72 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhccccc-CCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEEE--CCEEEc------CH
Confidence 3678999999999999999999998874 5888899888753 5665555 589999875 787653 45
Q ss_pred HHHHHHHHhh
Q 030222 171 STLTTSIEKF 180 (181)
Q Consensus 171 ~~l~~~i~~~ 180 (181)
++|.++++..
T Consensus 73 ~~~~~~~~~~ 82 (85)
T PRK11200 73 TDFEAYVKEN 82 (85)
T ss_pred HHHHHHHHHh
Confidence 6677776654
No 149
>PRK13599 putative peroxiredoxin; Provisional
Probab=98.79 E-value=9.6e-08 Score=74.50 Aligned_cols=88 Identities=11% Similarity=0.186 Sum_probs=65.7
Q ss_pred CCCc-EEEEEECCCChhhhhhhhhHHHHHHHhcC-ceEEEEEeCCC---------------------------ChHHHHH
Q 030222 93 SGSP-VLVEFWAPWCGPCRMIHPIIDELSKQYVG-KLKCYKVNTDE---------------------------SPSIATR 143 (181)
Q Consensus 93 ~~~~-vlV~F~a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~d~---------------------------~~~l~~~ 143 (181)
.|++ ||+.||++||+.|....+.+.++++++.+ ++.++.|+.|. +..+++.
T Consensus 27 ~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va~~ 106 (215)
T PRK13599 27 AGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVSNQ 106 (215)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHHHH
Confidence 4665 56799999999999999999999999964 47777776653 3457788
Q ss_pred cCCC-------cccEEEEE-eCCeEEEEEeCC----CCHHHHHHHHHhh
Q 030222 144 YGIR-------SIPTVMIF-KNGEKKDTVIGA----VPKSTLTTSIEKF 180 (181)
Q Consensus 144 y~V~-------~~Ptl~i~-~~G~~~~~~~G~----~~~~~l~~~i~~~ 180 (181)
||+. .+|+++++ ++|+++..+... +..+++...|+.+
T Consensus 107 yg~~~~~~~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~eilr~l~~l 155 (215)
T PRK13599 107 LGMIHPGKGTNTVRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRALKAL 155 (215)
T ss_pred cCCCccCCCCceeeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHHh
Confidence 8873 68986555 689988765422 4577777777653
No 150
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=98.79 E-value=8.1e-08 Score=67.84 Aligned_cols=90 Identities=11% Similarity=0.079 Sum_probs=69.3
Q ss_pred HhhCCCcEEEEEECC----CChhhhhhhhhHHHHHHHhcCceEEEEEeCCC--ChHHHHHcCCCcccEEEEE--e--CCe
Q 030222 90 VLDSGSPVLVEFWAP----WCGPCRMIHPIIDELSKQYVGKLKCYKVNTDE--SPSIATRYGIRSIPTVMIF--K--NGE 159 (181)
Q Consensus 90 ~~~~~~~vlV~F~a~----wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~--~~~l~~~y~V~~~Ptl~i~--~--~G~ 159 (181)
..+++|.++|++|++ ||..|+.... =+++.+-++.+..+...|++. ...++..++++++|+++++ + +.+
T Consensus 13 ak~e~K~llVylhs~~~~~~~~fc~~~l~-~~~v~~~ln~~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~l~~~~~~~~ 91 (116)
T cd02991 13 AKQELRFLLVYLHGDDHQDTDEFCRNTLC-APEVIEYINTRMLFWACSVAKPEGYRVSQALRERTYPFLAMIMLKDNRMT 91 (116)
T ss_pred HHhhCCEEEEEEeCCCCccHHHHHHHHcC-CHHHHHHHHcCEEEEEEecCChHHHHHHHHhCCCCCCEEEEEEecCCceE
Confidence 456789999999999 8999976542 134444455567777778764 3568899999999998777 2 345
Q ss_pred EEEEEeCCCCHHHHHHHHHhh
Q 030222 160 KKDTVIGAVPKSTLTTSIEKF 180 (181)
Q Consensus 160 ~~~~~~G~~~~~~l~~~i~~~ 180 (181)
++.++.|.++.++|...|+.+
T Consensus 92 vv~~i~G~~~~~~ll~~L~~~ 112 (116)
T cd02991 92 IVGRLEGLIQPEDLINRLTFI 112 (116)
T ss_pred EEEEEeCCCCHHHHHHHHHHH
Confidence 788999999999999998865
No 151
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.78 E-value=1.7e-09 Score=83.60 Aligned_cols=99 Identities=25% Similarity=0.560 Sum_probs=86.3
Q ss_pred ceeeeccchhhHHHhhCCCcEEEEEECCCChhhhhhhhhHHHHHHHhcC-ceEEEEEeCCCChHHHHHcCCCcccEEEEE
Q 030222 77 QETAVEDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVG-KLKCYKVNTDESPSIATRYGIRSIPTVMIF 155 (181)
Q Consensus 77 ~~~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~d~~~~l~~~y~V~~~Ptl~i~ 155 (181)
....+++++|..+. ..-.+++|+++|||.|+...|.++..+.--.+ .+++.+||...++.+.-||-+...|||.-.
T Consensus 25 ~~~~~~eenw~~~l---~gewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~npgLsGRF~vtaLptIYHv 101 (248)
T KOG0913|consen 25 KLTRIDEENWKELL---TGEWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNPGLSGRFLVTALPTIYHV 101 (248)
T ss_pred eeEEecccchhhhh---chHHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEeccccceeeEEEecceEEEe
Confidence 56678899998865 34578999999999999999999998765443 489999999999999999999999999999
Q ss_pred eCCeEEEEEeCCCCHHHHHHHHHh
Q 030222 156 KNGEKKDTVIGAVPKSTLTTSIEK 179 (181)
Q Consensus 156 ~~G~~~~~~~G~~~~~~l~~~i~~ 179 (181)
++|+.. +|.|.+++++++.+++.
T Consensus 102 kDGeFr-rysgaRdk~dfisf~~~ 124 (248)
T KOG0913|consen 102 KDGEFR-RYSGARDKNDFISFEEH 124 (248)
T ss_pred eccccc-cccCcccchhHHHHHHh
Confidence 999875 69999999999988864
No 152
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.75 E-value=7.2e-08 Score=84.94 Aligned_cols=79 Identities=15% Similarity=0.304 Sum_probs=68.8
Q ss_pred CCcE-EEEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEeCCeEEEEEeCCCCHHH
Q 030222 94 GSPV-LVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKST 172 (181)
Q Consensus 94 ~~~v-lV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~y~V~~~Ptl~i~~~G~~~~~~~G~~~~~~ 172 (181)
++++ +-.|.++||++|......+++++.+.+ ++..-.+|..+.++++++|+|.++|++++ ||+++ +.|..+.++
T Consensus 475 ~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~-~i~~~~i~~~~~~~~~~~~~v~~vP~~~i--~~~~~--~~G~~~~~~ 549 (555)
T TIGR03143 475 TKPVNIKIGVSLSCTLCPDVVLAAQRIASLNP-NVEAEMIDVSHFPDLKDEYGIMSVPAIVV--DDQQV--YFGKKTIEE 549 (555)
T ss_pred CCCeEEEEEECCCCCCcHHHHHHHHHHHHhCC-CceEEEEECcccHHHHHhCCceecCEEEE--CCEEE--EeeCCCHHH
Confidence 4555 556689999999999999999999987 69999999999999999999999999998 67765 558889999
Q ss_pred HHHHH
Q 030222 173 LTTSI 177 (181)
Q Consensus 173 l~~~i 177 (181)
+.++|
T Consensus 550 ~~~~~ 554 (555)
T TIGR03143 550 MLELI 554 (555)
T ss_pred HHHhh
Confidence 98876
No 153
>PRK13191 putative peroxiredoxin; Provisional
Probab=98.74 E-value=1.2e-07 Score=73.89 Aligned_cols=88 Identities=11% Similarity=0.171 Sum_probs=64.5
Q ss_pred CCCcEEE-EEECCCChhhhhhhhhHHHHHHHhcC-ceEEEEEeCCC---------------------------ChHHHHH
Q 030222 93 SGSPVLV-EFWAPWCGPCRMIHPIIDELSKQYVG-KLKCYKVNTDE---------------------------SPSIATR 143 (181)
Q Consensus 93 ~~~~vlV-~F~a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~d~---------------------------~~~l~~~ 143 (181)
.|++++| +||++||+.|..+.+.|+++++++.+ ++.++.|++|. +..+++.
T Consensus 32 ~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia~~ 111 (215)
T PRK13191 32 KGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVAKR 111 (215)
T ss_pred CCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHHHHH
Confidence 4665554 88999999999999999999999963 47777776652 3467778
Q ss_pred cCCC-------cccEEEEE-eCCeEEEEEeCC----CCHHHHHHHHHhh
Q 030222 144 YGIR-------SIPTVMIF-KNGEKKDTVIGA----VPKSTLTTSIEKF 180 (181)
Q Consensus 144 y~V~-------~~Ptl~i~-~~G~~~~~~~G~----~~~~~l~~~i~~~ 180 (181)
||+. .+|+.+++ ++|++...+.+. +..+++...|+.+
T Consensus 112 ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al 160 (215)
T PRK13191 112 LGMIHAESSTATVRAVFIVDDKGTVRLILYYPMEIGRNIDEILRAIRAL 160 (215)
T ss_pred cCCcccccCCceeEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 8873 46764444 699988876543 4567777777653
No 154
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=98.68 E-value=7.6e-08 Score=73.88 Aligned_cols=77 Identities=21% Similarity=0.403 Sum_probs=56.8
Q ss_pred CCCcEEEEEECCCChhhhhhhhhHHHHHHHhcCceEEEEE----------------------------------------
Q 030222 93 SGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKV---------------------------------------- 132 (181)
Q Consensus 93 ~~~~vlV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~v---------------------------------------- 132 (181)
++++.++.|..+.||+|+.+.+.+.+ ..+++.+..+
T Consensus 76 ~~~~~i~~f~D~~Cp~C~~~~~~l~~----~~~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~~ 151 (197)
T cd03020 76 NGKRVVYVFTDPDCPYCRKLEKELKP----NADGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPPA 151 (197)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHhh----ccCceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCCc
Confidence 36799999999999999999998876 1222322211
Q ss_pred -----eCCCChHHHHHcCCCcccEEEEEeCCeEEEEEeCCCCHHHHHHHH
Q 030222 133 -----NTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSI 177 (181)
Q Consensus 133 -----d~d~~~~l~~~y~V~~~Ptl~i~~~G~~~~~~~G~~~~~~l~~~i 177 (181)
+.+++..+++++||+++|+++ +++|+. +.|..+.++|.++|
T Consensus 152 ~~~~~~i~~~~~l~~~~gi~gtPtii-~~~G~~---~~G~~~~~~l~~~L 197 (197)
T cd03020 152 ASCDNPVAANLALGRQLGVNGTPTIV-LADGRV---VPGAPPAAQLEALL 197 (197)
T ss_pred cccCchHHHHHHHHHHcCCCcccEEE-ECCCeE---ecCCCCHHHHHhhC
Confidence 112334688999999999997 778876 56888888887764
No 155
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=98.65 E-value=1e-07 Score=73.40 Aligned_cols=87 Identities=16% Similarity=0.252 Sum_probs=63.7
Q ss_pred CCCcEEEEEEC-CCChhhhhhhhhHHHHHHHhcC-ceEEEEEeCCC----------------------------ChHHHH
Q 030222 93 SGSPVLVEFWA-PWCGPCRMIHPIIDELSKQYVG-KLKCYKVNTDE----------------------------SPSIAT 142 (181)
Q Consensus 93 ~~~~vlV~F~a-~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~d~----------------------------~~~l~~ 142 (181)
.|++++|+||. .||+.|....+.+.++++++.+ ++.++.|+.|. +.++++
T Consensus 35 ~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~ia~ 114 (199)
T PTZ00253 35 KGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKSIAR 114 (199)
T ss_pred CCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECcHhHHHH
Confidence 57899999994 8899999999999999999974 47787777652 235778
Q ss_pred HcCCC------cccEEEEE-eCCeEEEEEeCC----CCHHHHHHHHHh
Q 030222 143 RYGIR------SIPTVMIF-KNGEKKDTVIGA----VPKSTLTTSIEK 179 (181)
Q Consensus 143 ~y~V~------~~Ptl~i~-~~G~~~~~~~G~----~~~~~l~~~i~~ 179 (181)
.||+. .+|+.+++ ++|+++....+. +..+++...|+.
T Consensus 115 ~ygv~~~~~g~~~r~~fiID~~G~i~~~~~~~~~~~r~~~e~l~~l~a 162 (199)
T PTZ00253 115 SYGVLEEEQGVAYRGLFIIDPKGMLRQITVNDMPVGRNVEEVLRLLEA 162 (199)
T ss_pred HcCCcccCCCceEEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHh
Confidence 88985 46775544 699988876653 234455555543
No 156
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=98.62 E-value=8.7e-07 Score=66.48 Aligned_cols=104 Identities=17% Similarity=0.357 Sum_probs=84.3
Q ss_pred cceeeeccchhhHHHhhCCCcEEEEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCCCChHHHHHcCCC--cccEEE
Q 030222 76 AQETAVEDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIR--SIPTVM 153 (181)
Q Consensus 76 ~~~~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~y~V~--~~Ptl~ 153 (181)
.....++.+++..+......++++.|..........+...+.++++++.+++.|+.+|++..+.+.+.||+. .+|+++
T Consensus 77 P~v~~~t~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~~~~~~~~~~~i~~~~~P~~v 156 (184)
T PF13848_consen 77 PLVPELTPENFEKLFSSPKPPVLILFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDADDFPRLLKYFGIDEDDLPALV 156 (184)
T ss_dssp TSCEEESTTHHHHHHSTSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEETTTTHHHHHHTTTTTSSSSEEE
T ss_pred ccccccchhhHHHHhcCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeehHHhHHHHHHcCCCCccCCEEE
Confidence 445677888888755433334888888777888899999999999999999999999999999999999998 999999
Q ss_pred EEe--CCeEEEEEeCCCCHHHHHHHHHh
Q 030222 154 IFK--NGEKKDTVIGAVPKSTLTTSIEK 179 (181)
Q Consensus 154 i~~--~G~~~~~~~G~~~~~~l~~~i~~ 179 (181)
+++ +++......|..+.+.|.+||++
T Consensus 157 i~~~~~~~~~~~~~~~~~~~~i~~Fl~d 184 (184)
T PF13848_consen 157 IFDSNKGKYYYLPEGEITPESIEKFLND 184 (184)
T ss_dssp EEETTTSEEEE--SSCGCHHHHHHHHHH
T ss_pred EEECCCCcEEcCCCCCCCHHHHHHHhcC
Confidence 886 45543334889999999999975
No 157
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=98.62 E-value=2.3e-07 Score=67.40 Aligned_cols=80 Identities=28% Similarity=0.523 Sum_probs=59.3
Q ss_pred CCCcEEEEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCC----------------------------------C--
Q 030222 93 SGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTD----------------------------------E-- 136 (181)
Q Consensus 93 ~~~~vlV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d----------------------------------~-- 136 (181)
+.++++++|+.++||+|+.+.+.+.++..+++ ++.+...+.. .
T Consensus 4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~-~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~ 82 (154)
T cd03023 4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKEDP-DVRVVFKEFPILGESSVLAARVALAVWKNGPGKYLEFHNALMATRGR 82 (154)
T ss_pred CCCEEEEEEECCCChhHHHhhHHHHHHHHHCC-CceEEEEeCCccCcchHHHHHHHHHHHHhChhHHHHHHHHHHhcCCC
Confidence 46789999999999999999999999887775 3434332220 0
Q ss_pred -----------------------------------ChHHHHHcCCCcccEEEEEeCCeEEEEEeCCCCHHHHHHHHH
Q 030222 137 -----------------------------------SPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIE 178 (181)
Q Consensus 137 -----------------------------------~~~l~~~y~V~~~Ptl~i~~~G~~~~~~~G~~~~~~l~~~i~ 178 (181)
+.+++.++||.++||+++ +|+ .+.|..+.+.|.+.|+
T Consensus 83 ~~~~~l~~~a~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~gtPt~~v--~g~---~~~G~~~~~~l~~~i~ 154 (154)
T cd03023 83 LNEESLLRIAKKAGLDEAKLKKDMDDPEIEATIDKNRQLARALGITGTPAFII--GDT---VIPGAVPADTLKEAID 154 (154)
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHhhChHHHHHHHHHHHHHHHcCCCcCCeEEE--CCE---EecCCCCHHHHHHHhC
Confidence 012455779999999887 565 4678999999988774
No 158
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=98.62 E-value=8e-07 Score=62.59 Aligned_cols=88 Identities=23% Similarity=0.389 Sum_probs=73.4
Q ss_pred hhCCCcEEEEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEeCCeEEEEEeCC---
Q 030222 91 LDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGA--- 167 (181)
Q Consensus 91 ~~~~~~vlV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~y~V~~~Ptl~i~~~G~~~~~~~G~--- 167 (181)
....+.|++-|...|-|.|..+...|.++++...+-+.++-+|.|+-+++.+-|++...||+++|-|++.+.--.|.
T Consensus 20 ~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~IylvdideV~~~~~~~~l~~p~tvmfFfn~kHmkiD~gtgdn 99 (142)
T KOG3414|consen 20 STEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDEVPDFVKMYELYDPPTVMFFFNNKHMKIDLGTGDN 99 (142)
T ss_pred cccceEEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecchhhhhhhhhcccCCceEEEEEcCceEEEeeCCCCC
Confidence 34578999999999999999999999999999998889999999999999999999999998888777765432222
Q ss_pred -------CCHHHHHHHHH
Q 030222 168 -------VPKSTLTTSIE 178 (181)
Q Consensus 168 -------~~~~~l~~~i~ 178 (181)
-+++++++.|+
T Consensus 100 ~Kin~~~~~kq~~Idiie 117 (142)
T KOG3414|consen 100 NKINFAFEDKQEFIDIIE 117 (142)
T ss_pred ceEEEEeccHHHHHHHHH
Confidence 24566666665
No 159
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=98.61 E-value=2.4e-07 Score=73.85 Aligned_cols=84 Identities=14% Similarity=0.322 Sum_probs=61.3
Q ss_pred CCCcEEEEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeC--------------------------------------
Q 030222 93 SGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNT-------------------------------------- 134 (181)
Q Consensus 93 ~~~~vlV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~-------------------------------------- 134 (181)
+++.+++.|..+.||+|+++.+.+.++.+. +++.+..+..
T Consensus 116 ~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~--g~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~~~~ 193 (251)
T PRK11657 116 DAPRIVYVFADPNCPYCKQFWQQARPWVDS--GKVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLGLKP 193 (251)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHhhc--CceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccCCCc
Confidence 356789999999999999999988876554 2343332221
Q ss_pred ------------CCChHHHHHcCCCcccEEEEEe-CCeEEEEEeCCCCHHHHHHHHHh
Q 030222 135 ------------DESPSIATRYGIRSIPTVMIFK-NGEKKDTVIGAVPKSTLTTSIEK 179 (181)
Q Consensus 135 ------------d~~~~l~~~y~V~~~Ptl~i~~-~G~~~~~~~G~~~~~~l~~~i~~ 179 (181)
+++..+++++||+++|++++-+ +|+ +..+.|+.+.++|.+.|.+
T Consensus 194 ~~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G~-~~~v~G~~~~~~L~~~l~~ 250 (251)
T PRK11657 194 PASIPAAVRKQLADNQKLMDDLGANATPAIYYMDKDGT-LQQVVGLPDPAQLAEIMGP 250 (251)
T ss_pred cccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCC-EEEecCCCCHHHHHHHhCC
Confidence 1122477889999999998875 453 3457899999999998864
No 160
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=2.2e-08 Score=77.15 Aligned_cols=80 Identities=25% Similarity=0.525 Sum_probs=73.9
Q ss_pred CCCcEEEEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEeCCeEEEEEeCCCCHHH
Q 030222 93 SGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKST 172 (181)
Q Consensus 93 ~~~~vlV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~y~V~~~Ptl~i~~~G~~~~~~~G~~~~~~ 172 (181)
+++.+++.||+.||..|+.+...++.+++.. .++.+++++.++.++++..+.+.++|++.++..|+.+.+..|..+...
T Consensus 16 ~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~-~~~~~~k~~a~~~~eis~~~~v~~vp~~~~~~~~~~v~~l~~~~~~~~ 94 (227)
T KOG0911|consen 16 KGKLLVLHFWAIWAVVQKQMDQVFDHLAEYF-KNAQFLKLEAEEFPEISNLIAVEAVPYFVFFFLGEKVDRLSGADPPFL 94 (227)
T ss_pred ccchhhhhhhhhhhhhhhhHHHHHHHHHHhh-hhheeeeehhhhhhHHHHHHHHhcCceeeeeecchhhhhhhccCcHHH
Confidence 6789999999999999999999999999988 579999999999999999999999999999999999999999877654
Q ss_pred H
Q 030222 173 L 173 (181)
Q Consensus 173 l 173 (181)
.
T Consensus 95 ~ 95 (227)
T KOG0911|consen 95 V 95 (227)
T ss_pred H
Confidence 3
No 161
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=98.60 E-value=2e-06 Score=61.23 Aligned_cols=93 Identities=22% Similarity=0.338 Sum_probs=73.2
Q ss_pred hhHHH-hhCCCcEEEEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCccc-EEEEEeCCeEEEE
Q 030222 86 WQSLV-LDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIP-TVMIFKNGEKKDT 163 (181)
Q Consensus 86 ~~~~~-~~~~~~vlV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~y~V~~~P-tl~i~~~G~~~~~ 163 (181)
.++.+ .++++.|++-|..+|-+.|..+...|.+++++...-..++.+|.++-+++.+-|.+. -| |+++|-+|+.+..
T Consensus 11 VDqAI~~e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~a~IY~vDi~~Vpdfn~~yel~-dP~tvmFF~rnkhm~v 89 (133)
T PF02966_consen 11 VDQAILSEEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNFAVIYLVDIDEVPDFNQMYELY-DPCTVMFFFRNKHMMV 89 (133)
T ss_dssp HHHHHHH-SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTTHCCHHHTTS--SSEEEEEEETTEEEEE
T ss_pred HHHHHhccCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcceEEEEEEcccchhhhcccccC-CCeEEEEEecCeEEEE
Confidence 33434 455889999999999999999999999999999988999999999999999999999 78 5777777887764
Q ss_pred EeCC----------CCHHHHHHHHHh
Q 030222 164 VIGA----------VPKSTLTTSIEK 179 (181)
Q Consensus 164 ~~G~----------~~~~~l~~~i~~ 179 (181)
-.|. .+++++.+.|+-
T Consensus 90 D~GtgnnnKin~~~~~kqe~iDiie~ 115 (133)
T PF02966_consen 90 DFGTGNNNKINWAFEDKQEFIDIIET 115 (133)
T ss_dssp ESSSSSSSSBCS--SCHHHHHHHHHH
T ss_pred EecCCCccEEEEEcCcHHHHHHHHHH
Confidence 4442 236777777653
No 162
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.59 E-value=4.5e-07 Score=79.28 Aligned_cols=95 Identities=12% Similarity=0.195 Sum_probs=76.1
Q ss_pred eeccchhhHHHhhCCCcEEEEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEeCCe
Q 030222 80 AVEDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGE 159 (181)
Q Consensus 80 ~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~y~V~~~Ptl~i~~~G~ 159 (181)
.++++..+.+..-.+..-+..|+.++|++|......+++++...+ ++..-.+|..+.++++++|+|.++|++++ ||+
T Consensus 102 ~l~~~~~~~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~-~i~~~~id~~~~~~~~~~~~v~~VP~~~i--~~~ 178 (517)
T PRK15317 102 KLDQEVIEQIKALDGDFHFETYVSLSCHNCPDVVQALNLMAVLNP-NITHTMIDGALFQDEVEARNIMAVPTVFL--NGE 178 (517)
T ss_pred CCCHHHHHHHHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCC-CceEEEEEchhCHhHHHhcCCcccCEEEE--CCc
Confidence 344444444332234455889999999999999999999999876 69999999999999999999999999976 666
Q ss_pred EEEEEeCCCCHHHHHHHHHh
Q 030222 160 KKDTVIGAVPKSTLTTSIEK 179 (181)
Q Consensus 160 ~~~~~~G~~~~~~l~~~i~~ 179 (181)
.+ +.|..+.+++.+.+.+
T Consensus 179 ~~--~~g~~~~~~~~~~~~~ 196 (517)
T PRK15317 179 EF--GQGRMTLEEILAKLDT 196 (517)
T ss_pred EE--EecCCCHHHHHHHHhc
Confidence 44 6688899888888764
No 163
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.59 E-value=2.1e-07 Score=64.99 Aligned_cols=74 Identities=23% Similarity=0.525 Sum_probs=59.2
Q ss_pred chhhHHHhh--CCCcEEEEEEC--------CCChhhhhhhhhHHHHHHHhcCceEEEEEeC-------CCChHHHHHcCC
Q 030222 84 ATWQSLVLD--SGSPVLVEFWA--------PWCGPCRMIHPIIDELSKQYVGKLKCYKVNT-------DESPSIATRYGI 146 (181)
Q Consensus 84 ~~~~~~~~~--~~~~vlV~F~a--------~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~-------d~~~~l~~~y~V 146 (181)
+.|++++.. +++.++|+|++ +|||.|....|.+++..+..+.+++|+.++. |.+..+....++
T Consensus 13 e~~~~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR~d~~~ 92 (128)
T KOG3425|consen 13 ESFEETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFRKDPGI 92 (128)
T ss_pred HHHHHHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCccccCCCc
Confidence 445554432 46679999986 5999999999999999998888899999988 445567778888
Q ss_pred -CcccEEEEEeC
Q 030222 147 -RSIPTVMIFKN 157 (181)
Q Consensus 147 -~~~Ptl~i~~~ 157 (181)
.++||++-+++
T Consensus 93 lt~vPTLlrw~~ 104 (128)
T KOG3425|consen 93 LTAVPTLLRWKR 104 (128)
T ss_pred eeecceeeEEcC
Confidence 99999988864
No 164
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=98.59 E-value=3.5e-07 Score=63.38 Aligned_cols=92 Identities=18% Similarity=0.315 Sum_probs=71.3
Q ss_pred eeeccchhhHHHhhCCCcEEEEEECCCC---hhhhhhhhhHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEE
Q 030222 79 TAVEDATWQSLVLDSGSPVLVEFWAPWC---GPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIF 155 (181)
Q Consensus 79 ~~l~~~~~~~~~~~~~~~vlV~F~a~wC---~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~y~V~~~Ptl~i~ 155 (181)
..++.+++++.+.. +...+++ ++..| +.+....=++.|+.+.+++......++.+....|..+||+..+|+++++
T Consensus 12 ~~vd~~~ld~~l~~-~~~~vlf-~~gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~~~~e~~L~~r~gv~~~PaLvf~ 89 (107)
T PF07449_consen 12 PRVDADTLDAFLAA-PGDAVLF-FAGDPARFPETADVAVILPELVKAFPGRFRGAVVARAAERALAARFGVRRWPALVFF 89 (107)
T ss_dssp EEE-CCCHHHHHHC-CSCEEEE-ESS-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEEHHHHHHHHHHHT-TSSSEEEEE
T ss_pred eeechhhHHHHHhC-CCcEEEE-ECCCCCcCcccccceeEcHHHHHhhhCccceEEECchhHHHHHHHhCCccCCeEEEE
Confidence 35667888886554 4344444 44444 5556666688999999999888888887788899999999999999999
Q ss_pred eCCeEEEEEeCCCCHHH
Q 030222 156 KNGEKKDTVIGAVPKST 172 (181)
Q Consensus 156 ~~G~~~~~~~G~~~~~~ 172 (181)
++|+.++.+.|..+.++
T Consensus 90 R~g~~lG~i~gi~dW~d 106 (107)
T PF07449_consen 90 RDGRYLGAIEGIRDWAD 106 (107)
T ss_dssp ETTEEEEEEESSSTHHH
T ss_pred ECCEEEEEecCeecccc
Confidence 99999999999988765
No 165
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=98.59 E-value=3.6e-07 Score=58.02 Aligned_cols=67 Identities=27% Similarity=0.469 Sum_probs=48.0
Q ss_pred EEEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCCCChHHHHHc----CCCcccEEEEEeCCeEEEEEeCCCCHHHH
Q 030222 98 LVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRY----GIRSIPTVMIFKNGEKKDTVIGAVPKSTL 173 (181)
Q Consensus 98 lV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~y----~V~~~Ptl~i~~~G~~~~~~~G~~~~~~l 173 (181)
++.|+.+||++|+.+...+.+. ++.+..+|.+.++...+.| ++..+|++++ +|+ .+.|. +.++|
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~------~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~--~~~---~i~g~-~~~~l 69 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDER------GIPFEEVDVDEDPEALEELKKLNGYRSVPVVVI--GDE---HLSGF-RPDKL 69 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHC------CCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEE--CCE---EEecC-CHHHH
Confidence 5789999999999998877662 3667778888776555444 7899999976 453 34454 55566
Q ss_pred HHH
Q 030222 174 TTS 176 (181)
Q Consensus 174 ~~~ 176 (181)
.++
T Consensus 70 ~~~ 72 (73)
T cd02976 70 RAL 72 (73)
T ss_pred Hhh
Confidence 655
No 166
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=98.57 E-value=5.2e-07 Score=60.24 Aligned_cols=73 Identities=11% Similarity=0.300 Sum_probs=54.7
Q ss_pred EEEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCCCCh----HHHHHcCC--CcccEEEEEeCCeEEEEEeCCCCHH
Q 030222 98 LVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESP----SIATRYGI--RSIPTVMIFKNGEKKDTVIGAVPKS 171 (181)
Q Consensus 98 lV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~----~l~~~y~V--~~~Ptl~i~~~G~~~~~~~G~~~~~ 171 (181)
++.|..+|||+|+.....|+++..++. .+.+..+|.+.+. ++.+.+|- +.+|.+++ +|+.++ ..+
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~-~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi--~g~~ig------G~~ 72 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERA-DFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFV--DEKHVG------GCT 72 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccC-CCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEE--CCEEec------CHH
Confidence 678899999999999999999876654 3677777877533 56677774 89999965 676642 456
Q ss_pred HHHHHHHh
Q 030222 172 TLTTSIEK 179 (181)
Q Consensus 172 ~l~~~i~~ 179 (181)
+|.+++++
T Consensus 73 dl~~~~~~ 80 (86)
T TIGR02183 73 DFEQLVKE 80 (86)
T ss_pred HHHHHHHh
Confidence 77777665
No 167
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=98.54 E-value=7.7e-07 Score=65.48 Aligned_cols=82 Identities=28% Similarity=0.459 Sum_probs=65.9
Q ss_pred CCCcEEEEEECCCChhhhhhhhhHHHHHHHh--cCceEEEEEeCCCC---------------------------------
Q 030222 93 SGSPVLVEFWAPWCGPCRMIHPIIDELSKQY--VGKLKCYKVNTDES--------------------------------- 137 (181)
Q Consensus 93 ~~~~vlV~F~a~wC~~C~~~~p~l~~la~~~--~~~v~~~~vd~d~~--------------------------------- 137 (181)
..+++|+.|+...||+|..+.+.+.++.+++ ++++.+...+....
T Consensus 11 ~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (162)
T PF13462_consen 11 DAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVPLDKHSSLRAAMAAECVADQGKYFWFFHELLFSQQE 90 (162)
T ss_dssp TTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESSSSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHCH
T ss_pred CCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEccccchhHHHHHHHHHHHHHHhHHHHHHHHHHHHhhh
Confidence 4578999999999999999999999999999 77788877766111
Q ss_pred -----------------------------------hHHHHHcCCCcccEEEEEeCCeEEEEEeCCCCHHHHHHHHHh
Q 030222 138 -----------------------------------PSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEK 179 (181)
Q Consensus 138 -----------------------------------~~l~~~y~V~~~Ptl~i~~~G~~~~~~~G~~~~~~l~~~i~~ 179 (181)
...++++||.++|||++ ||+.+ .|..+.++|.+.|++
T Consensus 91 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~tPt~~i--nG~~~---~~~~~~~~l~~~Id~ 162 (162)
T PF13462_consen 91 NFENKKDIAANAGGSNEQFNKCLNSDEIKAQLEADSQLARQLGITGTPTFFI--NGKYV---VGPYTIEELKELIDK 162 (162)
T ss_dssp STSSHHHHHHHTTSHHHHHHHHHTSHHHHHHHHHHHHHHHHHT-SSSSEEEE--TTCEE---ETTTSHHHHHHHHHH
T ss_pred ccchhHHHHHHcCCCHHHHHHHhhchHHHHHHHHHHHHHHHcCCccccEEEE--CCEEe---CCCCCHHHHHHHHcC
Confidence 02456779999999998 89884 788999999999986
No 168
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=98.47 E-value=6.6e-07 Score=66.91 Aligned_cols=38 Identities=29% Similarity=0.567 Sum_probs=33.4
Q ss_pred CCCcEEEEEECCCChhhhhhhhhHHHHHHHhcCceEEE
Q 030222 93 SGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCY 130 (181)
Q Consensus 93 ~~~~vlV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~ 130 (181)
.+++.+++|+...||+|+.+.+.+.++.+++++++.+.
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~v~~~ 51 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKDVKFE 51 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCCCceEE
Confidence 46799999999999999999999999999887765553
No 169
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=2.4e-06 Score=63.13 Aligned_cols=94 Identities=18% Similarity=0.255 Sum_probs=71.4
Q ss_pred hHHHhhCCCcEEEEEE-CCCChhhhhhhhhHHHHHHHhcC-ceEEEEEeC---------------------CCChHHHHH
Q 030222 87 QSLVLDSGSPVLVEFW-APWCGPCRMIHPIIDELSKQYVG-KLKCYKVNT---------------------DESPSIATR 143 (181)
Q Consensus 87 ~~~~~~~~~~vlV~F~-a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~---------------------d~~~~l~~~ 143 (181)
-.+....|++||++|| ..|+|.|-.++-.+++..+++.. ++.++.|.. |.+..+++.
T Consensus 23 v~Lsd~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~~~~~~F~~k~~L~f~LLSD~~~~v~~~ 102 (157)
T COG1225 23 VSLSDLRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPKSHKKFAEKHGLTFPLLSDEDGEVAEA 102 (157)
T ss_pred EehHHhcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCCceeeECCcHHHHHH
Confidence 4455566889999999 78999999999999999988875 577777766 556678999
Q ss_pred cCCCc------------cc-EEEEEeCCeEEEEEeCCCC---HHHHHHHHHhh
Q 030222 144 YGIRS------------IP-TVMIFKNGEKKDTVIGAVP---KSTLTTSIEKF 180 (181)
Q Consensus 144 y~V~~------------~P-tl~i~~~G~~~~~~~G~~~---~~~l~~~i~~~ 180 (181)
||+.. .+ |++|.++|++...+..... .+++.+.|+++
T Consensus 103 ygv~~~k~~~gk~~~~~~R~TfvId~dG~I~~~~~~v~~~~h~~~vl~~l~~l 155 (157)
T COG1225 103 YGVWGEKKMYGKEYMGIERSTFVIDPDGKIRYVWRKVKVKGHADEVLAALKKL 155 (157)
T ss_pred hCcccccccCccccccccceEEEECCCCeEEEEecCCCCcccHHHHHHHHHHh
Confidence 99843 23 5777789999998865433 45666666554
No 170
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=98.43 E-value=1.7e-06 Score=56.60 Aligned_cols=58 Identities=22% Similarity=0.431 Sum_probs=44.6
Q ss_pred EEEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCCCCh-----HHHHHcCCCcccEEEEEeCCeEE
Q 030222 98 LVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESP-----SIATRYGIRSIPTVMIFKNGEKK 161 (181)
Q Consensus 98 lV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~-----~l~~~y~V~~~Ptl~i~~~G~~~ 161 (181)
++.|+++|||+|+.+...++++.. ...++.++.+.+. .+.+.+|+.++|+++ .+|+.+
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~--~~g~~i 64 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV----KPAVVELDQHEDGSEIQDYLQELTGQRTVPNVF--IGGKFI 64 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC----CcEEEEEeCCCChHHHHHHHHHHhCCCCCCeEE--ECCEEE
Confidence 578999999999999999988755 3567778877652 355677999999974 377664
No 171
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=98.42 E-value=2.3e-06 Score=56.08 Aligned_cols=70 Identities=19% Similarity=0.300 Sum_probs=49.5
Q ss_pred CCcEEEEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCCCC---hHHHHHcCCCcccEEEEEeCCeEEEEEeCCCCH
Q 030222 94 GSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDES---PSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPK 170 (181)
Q Consensus 94 ~~~vlV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~---~~l~~~y~V~~~Ptl~i~~~G~~~~~~~G~~~~ 170 (181)
++.-++.|+.+||++|++....|++. ++.+-.+|++++ ..+.+.+|...+|.+++ +|+.+. ..
T Consensus 6 ~~~~V~ly~~~~Cp~C~~ak~~L~~~------gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~i--~g~~ig------G~ 71 (79)
T TIGR02190 6 KPESVVVFTKPGCPFCAKAKATLKEK------GYDFEEIPLGNDARGRSLRAVTGATTVPQVFI--GGKLIG------GS 71 (79)
T ss_pred CCCCEEEEECCCCHhHHHHHHHHHHc------CCCcEEEECCCChHHHHHHHHHCCCCcCeEEE--CCEEEc------CH
Confidence 34457789999999999999888653 355666777655 34556679999999965 777643 23
Q ss_pred HHHHHHH
Q 030222 171 STLTTSI 177 (181)
Q Consensus 171 ~~l~~~i 177 (181)
++|.++|
T Consensus 72 ~~l~~~l 78 (79)
T TIGR02190 72 DELEAYL 78 (79)
T ss_pred HHHHHHh
Confidence 5565554
No 172
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=98.40 E-value=1.5e-06 Score=53.79 Aligned_cols=56 Identities=27% Similarity=0.507 Sum_probs=43.4
Q ss_pred EEEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCCCChHH----HHHcCCCcccEEEEEeCCeEE
Q 030222 98 LVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSI----ATRYGIRSIPTVMIFKNGEKK 161 (181)
Q Consensus 98 lV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l----~~~y~V~~~Ptl~i~~~G~~~ 161 (181)
++.|+.+||++|+.....|++. ++.+-.+|++++++. .+.+|..++|++++ +|+.+
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~------~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i--~g~~I 60 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEK------GIPYEEVDVDEDEEAREELKELSGVRTVPQVFI--DGKFI 60 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT------TBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE--TTEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHc------CCeeeEcccccchhHHHHHHHHcCCCccCEEEE--CCEEC
Confidence 5789999999999999888543 377788888777543 34459999999987 77754
No 173
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=98.40 E-value=5.2e-06 Score=68.00 Aligned_cols=103 Identities=16% Similarity=0.292 Sum_probs=71.6
Q ss_pred cceeeeccchhhHHHhhCCCcEEEEEECCCChhhhhhhh------hHHHHHHHhc--CceEEEEEeCCCChHHHHHcCCC
Q 030222 76 AQETAVEDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHP------IIDELSKQYV--GKLKCYKVNTDESPSIATRYGIR 147 (181)
Q Consensus 76 ~~~~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p------~l~~la~~~~--~~v~~~~vd~d~~~~l~~~y~V~ 147 (181)
..+..+++.+|.+ +.++.+.++|+||.+- +.-+.... .+-+|+.+.- ..+.|..||...+..+++++|+.
T Consensus 34 DRVi~LneKNfk~-~lKkyd~l~l~yh~p~-~~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd~klAKKLgv~ 111 (383)
T PF01216_consen 34 DRVIDLNEKNFKR-ALKKYDVLVLYYHEPV-ESDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKDAKLAKKLGVE 111 (383)
T ss_dssp --CEEE-TTTHHH-HHHH-SEEEEEEE--S-TSSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTTHHHHHHHT--
T ss_pred cceEEcchhHHHH-HHHhhcEEEEEEecCC-ccCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHHHHHHHhcCcc
Confidence 3455788999999 5556668888888876 33333322 2334444442 24999999999999999999999
Q ss_pred cccEEEEEeCCeEEEEEeCCCCHHHHHHHHHhhC
Q 030222 148 SIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 181 (181)
Q Consensus 148 ~~Ptl~i~~~G~~~~~~~G~~~~~~l~~~i~~~L 181 (181)
..+++.+|++|+++. |.|.++++.|..||-+++
T Consensus 112 E~~SiyVfkd~~~IE-ydG~~saDtLVeFl~dl~ 144 (383)
T PF01216_consen 112 EEGSIYVFKDGEVIE-YDGERSADTLVEFLLDLL 144 (383)
T ss_dssp STTEEEEEETTEEEE-E-S--SHHHHHHHHHHHH
T ss_pred ccCcEEEEECCcEEE-ecCccCHHHHHHHHHHhc
Confidence 999999999999997 669999999999997753
No 174
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.39 E-value=3e-06 Score=74.08 Aligned_cols=95 Identities=14% Similarity=0.254 Sum_probs=76.0
Q ss_pred eeccchhhHHHhhCCCcEEEEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEeCCe
Q 030222 80 AVEDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGE 159 (181)
Q Consensus 80 ~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~y~V~~~Ptl~i~~~G~ 159 (181)
.++++..+.+..-.+..-+..|+.+.||+|......+++++.+.+ ++..-.+|..+.++++++|+|.++|++++ ||+
T Consensus 103 ~l~~~~~~~~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p-~i~~~~id~~~~~~~~~~~~v~~VP~~~i--~~~ 179 (515)
T TIGR03140 103 KLDEGIIDRIRRLNGPLHFETYVSLTCQNCPDVVQALNQMALLNP-NISHTMIDGALFQDEVEALGIQGVPAVFL--NGE 179 (515)
T ss_pred CCCHHHHHHHHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCC-CceEEEEEchhCHHHHHhcCCcccCEEEE--CCc
Confidence 344454444333234556888999999999999999999999987 68888999999999999999999999987 666
Q ss_pred EEEEEeCCCCHHHHHHHHHh
Q 030222 160 KKDTVIGAVPKSTLTTSIEK 179 (181)
Q Consensus 160 ~~~~~~G~~~~~~l~~~i~~ 179 (181)
.+ +.|..+.+++.+.+.+
T Consensus 180 ~~--~~g~~~~~~~~~~l~~ 197 (515)
T TIGR03140 180 EF--HNGRMDLAELLEKLEE 197 (515)
T ss_pred EE--EecCCCHHHHHHHHhh
Confidence 44 6688888888777654
No 175
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=98.36 E-value=2e-06 Score=66.61 Aligned_cols=39 Identities=26% Similarity=0.536 Sum_probs=31.9
Q ss_pred CCcEEEEEECCCChhhhhhhhhH---HHHHHHhcCceEEEEE
Q 030222 94 GSPVLVEFWAPWCGPCRMIHPII---DELSKQYVGKLKCYKV 132 (181)
Q Consensus 94 ~~~vlV~F~a~wC~~C~~~~p~l---~~la~~~~~~v~~~~v 132 (181)
+++.+|+|+...||+|..+.+.+ ..+.+.+++++.+..+
T Consensus 37 ~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~~v~~~~~ 78 (207)
T PRK10954 37 GEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPEGTKMTKY 78 (207)
T ss_pred CCCeEEEEeCCCCccHHHhcccccchHHHHHhCCCCCeEEEe
Confidence 56789999999999999999876 7888888876555443
No 176
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=98.30 E-value=6.5e-06 Score=57.64 Aligned_cols=99 Identities=11% Similarity=0.098 Sum_probs=76.1
Q ss_pred eeccchhhHHHhhCCCcEEEEEECCCChhhhhhhhhHHHHHHH---hcCceEEEEEeCCCChHHHHHcCCCc--ccEEEE
Q 030222 80 AVEDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQ---YVGKLKCYKVNTDESPSIATRYGIRS--IPTVMI 154 (181)
Q Consensus 80 ~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~la~~---~~~~v~~~~vd~d~~~~l~~~y~V~~--~Ptl~i 154 (181)
+++.+++.. +...+.+..++|| .=..-..+...+.+++++ +.+++.|+.+|.++.....+.||+.. +|.+.+
T Consensus 3 e~t~e~~~~-~~~~~~~~~~l~f--~~~~~~~~~~~~~~vAk~~~~~kgki~Fv~~d~~~~~~~~~~fgl~~~~~P~i~i 79 (111)
T cd03072 3 EITFENAEE-LTEEGLPFLILFH--DKDDLESLKEFKQAVARQLISEKGAINFLTADGDKFRHPLLHLGKTPADLPVIAI 79 (111)
T ss_pred ccccccHHH-HhcCCCCeEEEEe--cchHHHHHHHHHHHHHHHHHhcCceEEEEEEechHhhhHHHHcCCCHhHCCEEEE
Confidence 455666654 4555666666777 223346788899999999 99999999999999888999999997 999998
Q ss_pred EeCCe-EEEE-EeCCCCHHHHHHHHHhhC
Q 030222 155 FKNGE-KKDT-VIGAVPKSTLTTSIEKFL 181 (181)
Q Consensus 155 ~~~G~-~~~~-~~G~~~~~~l~~~i~~~L 181 (181)
..... ..+. ..+..+.+.|.+|+++++
T Consensus 80 ~~~~~~~Ky~~~~~~~t~~~i~~Fv~~~~ 108 (111)
T cd03072 80 DSFRHMYLFPDFEDVYVPGKLKQFVLDLH 108 (111)
T ss_pred EcchhcCcCCCCccccCHHHHHHHHHHHh
Confidence 86432 2333 567889999999999874
No 177
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=98.23 E-value=3.4e-06 Score=55.64 Aligned_cols=78 Identities=22% Similarity=0.419 Sum_probs=61.0
Q ss_pred EEEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEeCC--eEEEEEeCCCCHHHHHH
Q 030222 98 LVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNG--EKKDTVIGAVPKSTLTT 175 (181)
Q Consensus 98 lV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~y~V~~~Ptl~i~~~G--~~~~~~~G~~~~~~l~~ 175 (181)
+++|..+.|.-|......+.++..+.+ +.+-.||+++++++..+|+. .+|.+.+...+ .......+..+.++|.+
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~~--~~l~~vDI~~d~~l~~~Y~~-~IPVl~~~~~~~~~~~~~~~~~~d~~~L~~ 78 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEFP--FELEEVDIDEDPELFEKYGY-RIPVLHIDGIRQFKEQEELKWRFDEEQLRA 78 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTST--CEEEEEETTTTHHHHHHSCT-STSEEEETT-GGGCTSEEEESSB-HHHHHH
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhcC--ceEEEEECCCCHHHHHHhcC-CCCEEEEcCcccccccceeCCCCCHHHHHH
Confidence 678999999999999999988766654 88999999999999999996 79997775311 11234557789999999
Q ss_pred HHH
Q 030222 176 SIE 178 (181)
Q Consensus 176 ~i~ 178 (181)
+|+
T Consensus 79 ~L~ 81 (81)
T PF05768_consen 79 WLE 81 (81)
T ss_dssp HHH
T ss_pred HhC
Confidence 986
No 178
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=98.23 E-value=7e-06 Score=59.09 Aligned_cols=72 Identities=8% Similarity=0.159 Sum_probs=60.7
Q ss_pred hhhhhhHHHHHHHhcCc-eEEEEEeCCCChHHHHHcCCC--cccEEEEEeCCeEEEE-EeCCCCHHHHHHHHHhhC
Q 030222 110 RMIHPIIDELSKQYVGK-LKCYKVNTDESPSIATRYGIR--SIPTVMIFKNGEKKDT-VIGAVPKSTLTTSIEKFL 181 (181)
Q Consensus 110 ~~~~p~l~~la~~~~~~-v~~~~vd~d~~~~l~~~y~V~--~~Ptl~i~~~G~~~~~-~~G~~~~~~l~~~i~~~L 181 (181)
......+.++|++|.++ +.|+.+|.+++..+.+.|||. .+|+++++...+..+. +.|..+.+.+.+|+++++
T Consensus 40 ~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~~~~~~~fgl~~~~~P~v~i~~~~~~KY~~~~~~~t~e~i~~Fv~~~l 115 (130)
T cd02983 40 NKYLEILKSVAEKFKKKPWGWLWTEAGAQLDLEEALNIGGFGYPAMVAINFRKMKFATLKGSFSEDGINEFLRELS 115 (130)
T ss_pred HHHHHHHHHHHHHhcCCcEEEEEEeCcccHHHHHHcCCCccCCCEEEEEecccCccccccCccCHHHHHHHHHHHH
Confidence 45677889999999999 999999999999999999996 4999988864332444 678999999999999874
No 179
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=98.19 E-value=8.9e-06 Score=51.13 Aligned_cols=57 Identities=21% Similarity=0.419 Sum_probs=43.2
Q ss_pred EEEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCCCChHH----HHHcCCCcccEEEEEeCCeEEE
Q 030222 98 LVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSI----ATRYGIRSIPTVMIFKNGEKKD 162 (181)
Q Consensus 98 lV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l----~~~y~V~~~Ptl~i~~~G~~~~ 162 (181)
++.|+.+||++|+.....|.+.. +.+..+|.+.+++. .+..+...+|++++ +|+.+.
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~------i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~~--~~~~ig 62 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG------IEFEEIDILEDGELREELKELSGWPTVPQIFI--NGEFIG 62 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC------CcEEEEECCCCHHHHHHHHHHhCCCCcCEEEE--CCEEEe
Confidence 56789999999999999888763 66778888776643 44457788998754 777665
No 180
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=98.18 E-value=2e-05 Score=50.50 Aligned_cols=66 Identities=18% Similarity=0.303 Sum_probs=46.9
Q ss_pred EEEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCCCChH---HHHHcCCCcccEEEEEeCCeEEEEEeCCCCHHHHH
Q 030222 98 LVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPS---IATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLT 174 (181)
Q Consensus 98 lV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~---l~~~y~V~~~Ptl~i~~~G~~~~~~~G~~~~~~l~ 174 (181)
++.|..+||++|......|++. ++.+..+|++++.. +....|...+|.+++ +|+.+. ..++|.
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~~------~i~~~~~~v~~~~~~~~~~~~~g~~~vP~ifi--~g~~ig------g~~~l~ 68 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQEN------GISYEEIPLGKDITGRSLRAVTGAMTVPQVFI--DGELIG------GSDDLE 68 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc------CCCcEEEECCCChhHHHHHHHhCCCCcCeEEE--CCEEEe------CHHHHH
Confidence 6778999999999998887753 35666677765542 344569999999854 677653 356666
Q ss_pred HHH
Q 030222 175 TSI 177 (181)
Q Consensus 175 ~~i 177 (181)
+++
T Consensus 69 ~~l 71 (72)
T cd03029 69 KYF 71 (72)
T ss_pred HHh
Confidence 665
No 181
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=98.17 E-value=2.6e-05 Score=53.83 Aligned_cols=92 Identities=18% Similarity=0.310 Sum_probs=66.0
Q ss_pred ccchhhHHHhhC-CCcEEEEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCCCCh----HHHHHcCCC-cccEEEEE
Q 030222 82 EDATWQSLVLDS-GSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESP----SIATRYGIR-SIPTVMIF 155 (181)
Q Consensus 82 ~~~~~~~~~~~~-~~~vlV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~----~l~~~y~V~-~~Ptl~i~ 155 (181)
+.++++.++..+ +++++|+=+++.||-..+....+++.....++.+.++.+|.-+++ .++++|||+ .-|-++++
T Consensus 6 t~eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ~ili 85 (105)
T PF11009_consen 6 TEEQLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHESPQVILI 85 (105)
T ss_dssp SHHHHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----SSEEEEE
T ss_pred CHHHHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCcCCCcEEEE
Confidence 467788876654 678888889999999999999999999998877999999997765 578999996 78999999
Q ss_pred eCCeEEEEEe-CCCCHHHH
Q 030222 156 KNGEKKDTVI-GAVPKSTL 173 (181)
Q Consensus 156 ~~G~~~~~~~-G~~~~~~l 173 (181)
+||+++.... +..+.+.|
T Consensus 86 ~~g~~v~~aSH~~It~~~l 104 (105)
T PF11009_consen 86 KNGKVVWHASHWDITAEAL 104 (105)
T ss_dssp ETTEEEEEEEGGG-SHHHH
T ss_pred ECCEEEEECccccCCHHhc
Confidence 9999998544 34555544
No 182
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=98.17 E-value=1.2e-05 Score=51.69 Aligned_cols=67 Identities=21% Similarity=0.443 Sum_probs=48.8
Q ss_pred EEEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCCCChHHHHHc---CCCcccEEEEEeCCeEEEEEeCCCCHHHHH
Q 030222 98 LVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRY---GIRSIPTVMIFKNGEKKDTVIGAVPKSTLT 174 (181)
Q Consensus 98 lV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~y---~V~~~Ptl~i~~~G~~~~~~~G~~~~~~l~ 174 (181)
+..|..++|++|+.....|++. ++.+-.+|+++++...+.+ |...+|++++ +|+. .+.|+ ..+.|.
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~~------~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~--~g~~--~~~G~-~~~~~~ 69 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEEH------GIAFEEINIDEQPEAIDYVKAQGFRQVPVIVA--DGDL--SWSGF-RPDKLK 69 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHHC------CCceEEEECCCCHHHHHHHHHcCCcccCEEEE--CCCc--EEecc-CHHHHH
Confidence 3568899999999999888752 4778888998887766555 8889999866 4432 35554 555555
Q ss_pred H
Q 030222 175 T 175 (181)
Q Consensus 175 ~ 175 (181)
+
T Consensus 70 ~ 70 (72)
T TIGR02194 70 A 70 (72)
T ss_pred h
Confidence 4
No 183
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=98.16 E-value=1.6e-05 Score=55.61 Aligned_cols=75 Identities=16% Similarity=0.191 Sum_probs=61.7
Q ss_pred hhhhhhhhhHHHHHHHhc-CceEEEEEeCCCChHHHHHcCCCc----ccEEEEEeCCeEEEEEeCCC-CHHHHHHHHHhh
Q 030222 107 GPCRMIHPIIDELSKQYV-GKLKCYKVNTDESPSIATRYGIRS----IPTVMIFKNGEKKDTVIGAV-PKSTLTTSIEKF 180 (181)
Q Consensus 107 ~~C~~~~p~l~~la~~~~-~~v~~~~vd~d~~~~l~~~y~V~~----~Ptl~i~~~G~~~~~~~G~~-~~~~l~~~i~~~ 180 (181)
..-..+...+.++|+++. +++.|+.+|.++...+.+.||+.. +|+++++......+...+.. +.+.|.+|++++
T Consensus 31 ~~~~~~~~~~~~vAk~fk~gki~Fv~~D~~~~~~~l~~fgl~~~~~~~P~~~i~~~~~~KY~~~~~~~t~e~i~~F~~~f 110 (111)
T cd03073 31 KGTNYWRNRVLKVAKDFPDRKLNFAVADKEDFSHELEEFGLDFSGGEKPVVAIRTAKGKKYVMEEEFSDVDALEEFLEDF 110 (111)
T ss_pred hHHHHHHHHHHHHHHHCcCCeEEEEEEcHHHHHHHHHHcCCCcccCCCCEEEEEeCCCCccCCCcccCCHHHHHHHHHHh
Confidence 445678889999999999 799999999999888999999985 99999886333344456677 899999999986
Q ss_pred C
Q 030222 181 L 181 (181)
Q Consensus 181 L 181 (181)
+
T Consensus 111 ~ 111 (111)
T cd03073 111 F 111 (111)
T ss_pred C
Confidence 4
No 184
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=98.12 E-value=1.8e-05 Score=51.50 Aligned_cols=57 Identities=18% Similarity=0.473 Sum_probs=41.7
Q ss_pred EEEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCCCChHH----HHHcCCCcccEEEEEeCCeEEE
Q 030222 98 LVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSI----ATRYGIRSIPTVMIFKNGEKKD 162 (181)
Q Consensus 98 lV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l----~~~y~V~~~Ptl~i~~~G~~~~ 162 (181)
++.|+.+||++|+.....+++. ++.+-.+|++.++.. .+..|...+|++++ +|+.+.
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~------~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~i--~g~~ig 61 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSK------GVTFTEIRVDGDPALRDEMMQRSGRRTVPQIFI--GDVHVG 61 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHc------CCCcEEEEecCCHHHHHHHHHHhCCCCcCEEEE--CCEEEc
Confidence 4578999999999999988764 355666677766544 44458899999855 676543
No 185
>PHA03050 glutaredoxin; Provisional
Probab=98.11 E-value=1.9e-05 Score=55.04 Aligned_cols=60 Identities=18% Similarity=0.221 Sum_probs=42.7
Q ss_pred EEEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCCC---C----hHHHHHcCCCcccEEEEEeCCeEEE
Q 030222 98 LVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDE---S----PSIATRYGIRSIPTVMIFKNGEKKD 162 (181)
Q Consensus 98 lV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~---~----~~l~~~y~V~~~Ptl~i~~~G~~~~ 162 (181)
++.|..+|||+|+.....|++..-+++ .+-.+|+++ . ..+.+..|-+.+|++++ +|+.+.
T Consensus 15 V~vys~~~CPyC~~ak~~L~~~~i~~~---~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI--~g~~iG 81 (108)
T PHA03050 15 VTIFVKFTCPFCRNALDILNKFSFKRG---AYEIVDIKEFKPENELRDYFEQITGGRTVPRIFF--GKTSIG 81 (108)
T ss_pred EEEEECCCChHHHHHHHHHHHcCCCcC---CcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEE--CCEEEe
Confidence 667899999999999988877643322 344555554 2 23556678899999965 687765
No 186
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=98.08 E-value=2.8e-05 Score=49.95 Aligned_cols=57 Identities=19% Similarity=0.437 Sum_probs=42.4
Q ss_pred EEEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCCCChHHH----HHcCCC-cccEEEEEeCCeEEE
Q 030222 98 LVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIA----TRYGIR-SIPTVMIFKNGEKKD 162 (181)
Q Consensus 98 lV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~----~~y~V~-~~Ptl~i~~~G~~~~ 162 (181)
++.|..+||++|+.....|++. ++.+-.+|++.+++.. +++|.. .+|++++ +|+.+.
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~------~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i--~g~~ig 63 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKK------GVDYEEIDVDGDPALREEMINRSGGRRTVPQIFI--GDVHIG 63 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHC------CCcEEEEECCCCHHHHHHHHHHhCCCCccCEEEE--CCEEEe
Confidence 5678999999999999888763 3677778888765543 446777 9998865 676653
No 187
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=98.07 E-value=1.3e-05 Score=54.86 Aligned_cols=57 Identities=18% Similarity=0.323 Sum_probs=39.7
Q ss_pred EEEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCCCChH-------HHHHcCCCcccEEEEEeCCeEEE
Q 030222 98 LVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPS-------IATRYGIRSIPTVMIFKNGEKKD 162 (181)
Q Consensus 98 lV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~-------l~~~y~V~~~Ptl~i~~~G~~~~ 162 (181)
++.|..+|||+|++....|++. + +.+..+|+|++++ +.+..|.+.+|.+++ +|+.++
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~~----~--i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vfi--~g~~iG 73 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLTL----G--VNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVFV--GGKLVG 73 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHHc----C--CCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEEE--CCEEEc
Confidence 5668999999999999877765 2 4445566655432 334457899999854 777664
No 188
>PRK10329 glutaredoxin-like protein; Provisional
Probab=98.07 E-value=5.3e-05 Score=49.97 Aligned_cols=69 Identities=16% Similarity=0.263 Sum_probs=50.5
Q ss_pred EEEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCCCChHHH---HHcCCCcccEEEEEeCCeEEEEEeCCCCHHHHH
Q 030222 98 LVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIA---TRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLT 174 (181)
Q Consensus 98 lV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~---~~y~V~~~Ptl~i~~~G~~~~~~~G~~~~~~l~ 174 (181)
++.|..+||++|+.....|.+. ++.+-.+|++++++.. ...|...+|++++ +|+ .+.|+ ..+.|.
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~~------gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i--~~~---~~~Gf-~~~~l~ 70 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMESR------GFDFEMINVDRVPEAAETLRAQGFRQLPVVIA--GDL---SWSGF-RPDMIN 70 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHHC------CCceEEEECCCCHHHHHHHHHcCCCCcCEEEE--CCE---EEecC-CHHHHH
Confidence 5678999999999999888552 4788888998877643 3457889999976 443 34565 666677
Q ss_pred HHHH
Q 030222 175 TSIE 178 (181)
Q Consensus 175 ~~i~ 178 (181)
+.+.
T Consensus 71 ~~~~ 74 (81)
T PRK10329 71 RLHP 74 (81)
T ss_pred HHHH
Confidence 6654
No 189
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=98.03 E-value=3.2e-05 Score=49.67 Aligned_cols=57 Identities=19% Similarity=0.365 Sum_probs=44.1
Q ss_pred EEEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCCCChH----HHHHcCCCcccEEEEEeCCeEEE
Q 030222 98 LVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPS----IATRYGIRSIPTVMIFKNGEKKD 162 (181)
Q Consensus 98 lV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~----l~~~y~V~~~Ptl~i~~~G~~~~ 162 (181)
++.|+.+||++|+.....|++. ++.+-.+|+++++. +.+..+-..+|++++ +|+.++
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~~------gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~i--~~~~iG 63 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLREK------GLPYVEINIDIFPERKAELEERTGSSVVPQIFF--NEKLVG 63 (73)
T ss_pred EEEEecCCChhHHHHHHHHHHC------CCceEEEECCCCHHHHHHHHHHhCCCCcCEEEE--CCEEEe
Confidence 5678999999999999888863 36677788887664 556668889999865 677655
No 190
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.94 E-value=7.9e-05 Score=65.86 Aligned_cols=95 Identities=19% Similarity=0.202 Sum_probs=76.0
Q ss_pred hhHHHhhCCC-cEEEEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEe-CCeEE-E
Q 030222 86 WQSLVLDSGS-PVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFK-NGEKK-D 162 (181)
Q Consensus 86 ~~~~~~~~~~-~vlV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~y~V~~~Ptl~i~~-~G~~~-~ 162 (181)
+...+.+-.+ +.++.|+.+.|..|.++...++++++- .+++.+...|.+.+.+++++|+|...|++.+++ +|+.. -
T Consensus 357 l~~~~~~l~~~v~l~~~~~~~~~~~~e~~~~l~e~~~~-s~~i~~~~~~~~~~~~~~~~~~v~~~P~~~i~~~~~~~~~i 435 (555)
T TIGR03143 357 LVGIFGRLENPVTLLLFLDGSNEKSAELQSFLGEFASL-SEKLNSEAVNRGEEPESETLPKITKLPTVALLDDDGNYTGL 435 (555)
T ss_pred HHHHHHhcCCCEEEEEEECCCchhhHHHHHHHHHHHhc-CCcEEEEEeccccchhhHhhcCCCcCCEEEEEeCCCcccce
Confidence 3333333344 467788888999999999999999854 567999889999999999999999999999985 66543 4
Q ss_pred EEeCCCCHHHHHHHHHhhC
Q 030222 163 TVIGAVPKSTLTTSIEKFL 181 (181)
Q Consensus 163 ~~~G~~~~~~l~~~i~~~L 181 (181)
+|.|.....++..+|..++
T Consensus 436 ~f~g~P~G~Ef~s~i~~i~ 454 (555)
T TIGR03143 436 KFHGVPSGHELNSFILALY 454 (555)
T ss_pred EEEecCccHhHHHHHHHHH
Confidence 7889988889998887653
No 191
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=97.94 E-value=3.7e-05 Score=50.96 Aligned_cols=59 Identities=22% Similarity=0.450 Sum_probs=45.7
Q ss_pred EEEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCC--CC------------------------------hHHHHHcC
Q 030222 98 LVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTD--ES------------------------------PSIATRYG 145 (181)
Q Consensus 98 lV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d--~~------------------------------~~l~~~y~ 145 (181)
+++|+.+.|++|..+.+.+.++.+...+++.+...... .. ..++.++|
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 80 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALARALG 80 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHcC
Confidence 46899999999999999999998777777666555432 21 23567889
Q ss_pred CCcccEEEEEe
Q 030222 146 IRSIPTVMIFK 156 (181)
Q Consensus 146 V~~~Ptl~i~~ 156 (181)
+.++||+++..
T Consensus 81 ~~g~Pt~v~~~ 91 (98)
T cd02972 81 VTGTPTFVVNG 91 (98)
T ss_pred CCCCCEEEECC
Confidence 99999999864
No 192
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=97.92 E-value=0.00014 Score=48.90 Aligned_cols=83 Identities=16% Similarity=0.209 Sum_probs=64.9
Q ss_pred HhhCCCcEEEEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEeCC-eEEEEEeCCC
Q 030222 90 VLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNG-EKKDTVIGAV 168 (181)
Q Consensus 90 ~~~~~~~vlV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~y~V~~~Ptl~i~~~G-~~~~~~~G~~ 168 (181)
....+++++|-|+..+|. .....+.++|..+.+.+.|+.+. +.++.++|++.. |++++|++. +....+.|..
T Consensus 13 ~~~~~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~~~~F~~~~---~~~~~~~~~~~~-~~i~l~~~~~~~~~~y~g~~ 85 (97)
T cd02981 13 FLDKDDVVVVGFFKDEES---EEYKTFEKVAESLRDDYGFGHTS---DKEVAKKLKVKP-GSVVLFKPFEEEPVEYDGEF 85 (97)
T ss_pred HhccCCeEEEEEECCCCc---HHHHHHHHHHHhcccCCeEEEEC---hHHHHHHcCCCC-CceEEeCCcccCCccCCCCC
Confidence 345678899999999987 47778889999997778887776 457888888765 888888754 4445588888
Q ss_pred CHHHHHHHHHh
Q 030222 169 PKSTLTTSIEK 179 (181)
Q Consensus 169 ~~~~l~~~i~~ 179 (181)
..+.|.+||..
T Consensus 86 ~~~~l~~fi~~ 96 (97)
T cd02981 86 TEESLVEFIKD 96 (97)
T ss_pred CHHHHHHHHHh
Confidence 88999999974
No 193
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=97.92 E-value=1.9e-05 Score=60.70 Aligned_cols=103 Identities=15% Similarity=0.312 Sum_probs=79.4
Q ss_pred ccceeeec-cchhhHHHhhCC--CcEEEEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccE
Q 030222 75 EAQETAVE-DATWQSLVLDSG--SPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPT 151 (181)
Q Consensus 75 ~~~~~~l~-~~~~~~~~~~~~--~~vlV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~y~V~~~Pt 151 (181)
...+++++ ..+|...+..+- ..++|+.|-+.-+.|..+...+.-||.+|+ .++|+++-.... ...++|...++||
T Consensus 137 ~~~V~El~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP-~vKFckikss~~-gas~~F~~n~lP~ 214 (273)
T KOG3171|consen 137 YGFVYELETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEYP-IVKFCKIKSSNT-GASDRFSLNVLPT 214 (273)
T ss_pred cceEEEeccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccCC-ceeEEEeeeccc-cchhhhcccCCce
Confidence 34555554 566777665552 378899999999999999999999999999 599999977654 4689999999999
Q ss_pred EEEEeCCeEEEEEeC-------CCCHHHHHHHHHh
Q 030222 152 VMIFKNGEKKDTVIG-------AVPKSTLTTSIEK 179 (181)
Q Consensus 152 l~i~~~G~~~~~~~G-------~~~~~~l~~~i~~ 179 (181)
++||++|+.+..++. .....+|..||+.
T Consensus 215 LliYkgGeLIgNFv~va~qlgedffa~dle~FL~e 249 (273)
T KOG3171|consen 215 LLIYKGGELIGNFVSVAEQLGEDFFAGDLESFLNE 249 (273)
T ss_pred EEEeeCCchhHHHHHHHHHHhhhhhhhhHHHHHHH
Confidence 999999999875442 1334556666654
No 194
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=97.88 E-value=0.00018 Score=49.06 Aligned_cols=61 Identities=25% Similarity=0.339 Sum_probs=42.9
Q ss_pred CCcEEEEEEC----CCChhhhhhhhhHHHHHHHhcCceEEEEEeCCCChHHH----HHcCCCcccEEEEEeCCeEEE
Q 030222 94 GSPVLVEFWA----PWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIA----TRYGIRSIPTVMIFKNGEKKD 162 (181)
Q Consensus 94 ~~~vlV~F~a----~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~----~~y~V~~~Ptl~i~~~G~~~~ 162 (181)
+.+|+|+-.. +|||+|+.....|++. ++.+..+|+++++++. +..|-..+|.+++ +|+.++
T Consensus 11 ~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~------~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vfi--~g~~iG 79 (97)
T TIGR00365 11 ENPVVLYMKGTPQFPQCGFSARAVQILKAC------GVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLYV--KGEFVG 79 (97)
T ss_pred cCCEEEEEccCCCCCCCchHHHHHHHHHHc------CCCEEEEECCCCHHHHHHHHHHhCCCCCCEEEE--CCEEEe
Confidence 3455555443 8999999999888774 3566777887766543 4567789999865 677654
No 195
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=97.86 E-value=0.00019 Score=48.15 Aligned_cols=61 Identities=21% Similarity=0.375 Sum_probs=42.6
Q ss_pred CCcEEEEEEC----CCChhhhhhhhhHHHHHHHhcCceEEEEEeCCCChHH----HHHcCCCcccEEEEEeCCeEEE
Q 030222 94 GSPVLVEFWA----PWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSI----ATRYGIRSIPTVMIFKNGEKKD 162 (181)
Q Consensus 94 ~~~vlV~F~a----~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l----~~~y~V~~~Ptl~i~~~G~~~~ 162 (181)
+.+|+|+-.. +||++|+.....|++. ++.+..+|+++++++ .+..|-..+|.+++ +|+.+.
T Consensus 7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~------~i~y~~idv~~~~~~~~~l~~~~g~~tvP~vfi--~g~~iG 75 (90)
T cd03028 7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQL------GVDFGTFDILEDEEVRQGLKEYSNWPTFPQLYV--NGELVG 75 (90)
T ss_pred cCCEEEEEcCCCCCCCCcHHHHHHHHHHHc------CCCeEEEEcCCCHHHHHHHHHHhCCCCCCEEEE--CCEEEe
Confidence 3456655443 7999999999888775 256677777766654 44568889999854 777653
No 196
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.81 E-value=0.00018 Score=58.30 Aligned_cols=105 Identities=20% Similarity=0.348 Sum_probs=80.2
Q ss_pred ccceeeeccchhhHHHhhCCC--cEEEEEEC----CCChhhhhhhhhHHHHHHHhcC--------ceEEEEEeCCCChHH
Q 030222 75 EAQETAVEDATWQSLVLDSGS--PVLVEFWA----PWCGPCRMIHPIIDELSKQYVG--------KLKCYKVNTDESPSI 140 (181)
Q Consensus 75 ~~~~~~l~~~~~~~~~~~~~~--~vlV~F~a----~wC~~C~~~~p~l~~la~~~~~--------~v~~~~vd~d~~~~l 140 (181)
+..+..++++.|..++....+ .++|+|.| ..|.-|+.+..++.-++..+.. ++-|..||.|+.+++
T Consensus 39 ~~~VI~~n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p~~ 118 (331)
T KOG2603|consen 39 ESGVIRMNDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESPQV 118 (331)
T ss_pred CCCeEEecCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccHHH
Confidence 445667889999998875543 67888876 4799999999999888876632 477899999999999
Q ss_pred HHHcCCCcccEEEEEe--CCeEEE------EEeCCCCHHHHHHHHHhh
Q 030222 141 ATRYGIRSIPTVMIFK--NGEKKD------TVIGAVPKSTLTTSIEKF 180 (181)
Q Consensus 141 ~~~y~V~~~Ptl~i~~--~G~~~~------~~~G~~~~~~l~~~i~~~ 180 (181)
.+++++..+|++++|. .|++.. ...|. .+|++.+|+++.
T Consensus 119 Fq~l~ln~~P~l~~f~P~~~n~~~s~~~d~~~~g~-~Ae~iaqfv~~~ 165 (331)
T KOG2603|consen 119 FQQLNLNNVPHLVLFSPAKGNKKRSDQMDQQDLGF-EAEQIAQFVADR 165 (331)
T ss_pred HHHhcccCCCeEEEeCCCccccccCccchhhhcch-hHHHHHHHHHHh
Confidence 9999999999999993 333331 12233 388888888763
No 197
>PRK10638 glutaredoxin 3; Provisional
Probab=97.72 E-value=0.00018 Score=47.33 Aligned_cols=57 Identities=12% Similarity=0.335 Sum_probs=42.1
Q ss_pred EEEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCCCChH----HHHHcCCCcccEEEEEeCCeEEE
Q 030222 98 LVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPS----IATRYGIRSIPTVMIFKNGEKKD 162 (181)
Q Consensus 98 lV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~----l~~~y~V~~~Ptl~i~~~G~~~~ 162 (181)
++.|..+||++|+.....|++. ++.+..+|++++++ +.+..|...+|++++ +|+.+.
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~------gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~~--~g~~ig 64 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSK------GVSFQEIPIDGDAAKREEMIKRSGRTTVPQIFI--DAQHIG 64 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHc------CCCcEEEECCCCHHHHHHHHHHhCCCCcCEEEE--CCEEEe
Confidence 5678889999999999888864 35566677776654 445568889998855 677664
No 198
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=0.00031 Score=46.17 Aligned_cols=55 Identities=20% Similarity=0.518 Sum_probs=39.7
Q ss_pred EEEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCCCCh-----HHHHHc-CCCcccEEEEEeCCeE
Q 030222 98 LVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESP-----SIATRY-GIRSIPTVMIFKNGEK 160 (181)
Q Consensus 98 lV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~-----~l~~~y-~V~~~Ptl~i~~~G~~ 160 (181)
++.|..+|||+|++....|++. .+.+..++.+.+. +..++. |.+.+|.+++ +|+.
T Consensus 3 v~iyt~~~CPyC~~ak~~L~~~------g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i--~~~~ 63 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLDRK------GVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFI--GGKH 63 (80)
T ss_pred EEEEECCCCchHHHHHHHHHHc------CCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEE--CCEE
Confidence 5678899999999999888743 3556666665544 344555 8999999987 5553
No 199
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=97.64 E-value=0.00011 Score=56.05 Aligned_cols=101 Identities=15% Similarity=0.296 Sum_probs=80.0
Q ss_pred cccceeeeccchhhHHHhhC--CCcEEEEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccE
Q 030222 74 CEAQETAVEDATWQSLVLDS--GSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPT 151 (181)
Q Consensus 74 ~~~~~~~l~~~~~~~~~~~~--~~~vlV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~y~V~~~Pt 151 (181)
-.+.++.++...|...+... +-.|+|..|...-+.|.-+...+++++.+|+. ++|+++-... -...|--...||
T Consensus 89 kfG~V~~ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~-iKFVki~at~---cIpNYPe~nlPT 164 (240)
T KOG3170|consen 89 KFGEVFPISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQ-IKFVKIPATT---CIPNYPESNLPT 164 (240)
T ss_pred cccceeeccchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcCCc-ceEEeccccc---ccCCCcccCCCe
Confidence 35677788888888877655 45899999999999999999999999999995 8998886542 234566778999
Q ss_pred EEEEeCCeEEEEEeCC-------CCHHHHHHHHH
Q 030222 152 VMIFKNGEKKDTVIGA-------VPKSTLTTSIE 178 (181)
Q Consensus 152 l~i~~~G~~~~~~~G~-------~~~~~l~~~i~ 178 (181)
+++|..|.+...++|. .+.+++..+|-
T Consensus 165 l~VY~~G~lk~q~igll~lgG~n~t~ed~e~~L~ 198 (240)
T KOG3170|consen 165 LLVYHHGALKKQMIGLLELGGMNLTMEDVEDFLV 198 (240)
T ss_pred EEEeecchHHhheehhhhhcCCcCCHHHHHHHHH
Confidence 9999999988887764 34566666554
No 200
>PRK10824 glutaredoxin-4; Provisional
Probab=97.61 E-value=0.00023 Score=50.05 Aligned_cols=61 Identities=18% Similarity=0.299 Sum_probs=41.4
Q ss_pred CCcEEEEEEC----CCChhhhhhhhhHHHHHHHhcCceEEEEEeCCCChHHH----HHcCCCcccEEEEEeCCeEEE
Q 030222 94 GSPVLVEFWA----PWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIA----TRYGIRSIPTVMIFKNGEKKD 162 (181)
Q Consensus 94 ~~~vlV~F~a----~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~----~~y~V~~~Ptl~i~~~G~~~~ 162 (181)
..+|+|+-.. +|||+|+.....|+++. +.+..+|+++++++. +.-|-..+|.+++ +|+.++
T Consensus 14 ~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~------i~~~~idi~~d~~~~~~l~~~sg~~TVPQIFI--~G~~IG 82 (115)
T PRK10824 14 ENPILLYMKGSPKLPSCGFSAQAVQALSACG------ERFAYVDILQNPDIRAELPKYANWPTFPQLWV--DGELVG 82 (115)
T ss_pred cCCEEEEECCCCCCCCCchHHHHHHHHHHcC------CCceEEEecCCHHHHHHHHHHhCCCCCCeEEE--CCEEEc
Confidence 3455555444 69999999998887762 344456666665543 3346778888776 888776
No 201
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.60 E-value=0.00019 Score=63.74 Aligned_cols=86 Identities=16% Similarity=0.247 Sum_probs=71.2
Q ss_pred ceeeeccchhhHHHhhCCCcEEEEEECCCChhhhhhhhhH---HHHHHHhcCceEEEEEeCCCChHHHHHcC--------
Q 030222 77 QETAVEDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPII---DELSKQYVGKLKCYKVNTDESPSIATRYG-------- 145 (181)
Q Consensus 77 ~~~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l---~~la~~~~~~v~~~~vd~d~~~~l~~~y~-------- 145 (181)
..+...++.|.. ..+++||+++-...+||--|+.|...- .++|+-++.+...++||-++-|++-+.|+
T Consensus 27 ~W~pW~~eAf~~-A~~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~~FV~IKVDREERPDvD~~Ym~~~q~~tG 105 (667)
T COG1331 27 DWYPWGEEAFAK-AKEEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNENFVPVKVDREERPDVDSLYMNASQAITG 105 (667)
T ss_pred cccccCHHHHHH-HHHhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHhCceeeeEChhhccCHHHHHHHHHHHhcc
Confidence 344556777765 677899999999999999999998754 67888888889999999999999988885
Q ss_pred CCccc-EEEEEeCCeEEEE
Q 030222 146 IRSIP-TVMIFKNGEKKDT 163 (181)
Q Consensus 146 V~~~P-tl~i~~~G~~~~~ 163 (181)
-.+.| |+++-.+|++...
T Consensus 106 ~GGWPLtVfLTPd~kPFfa 124 (667)
T COG1331 106 QGGWPLTVFLTPDGKPFFA 124 (667)
T ss_pred CCCCceeEEECCCCceeee
Confidence 67999 5776789998864
No 202
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=97.59 E-value=0.00081 Score=49.68 Aligned_cols=75 Identities=15% Similarity=0.194 Sum_probs=51.7
Q ss_pred CC-cEEEEEECCCChhhhhh-hhhHHHHHHHhcC-ce-EEEEEeC-----------------------CCChHHHHHcCC
Q 030222 94 GS-PVLVEFWAPWCGPCRMI-HPIIDELSKQYVG-KL-KCYKVNT-----------------------DESPSIATRYGI 146 (181)
Q Consensus 94 ~~-~vlV~F~a~wC~~C~~~-~p~l~~la~~~~~-~v-~~~~vd~-----------------------d~~~~l~~~y~V 146 (181)
++ .+|++|.+.||+.|... .+.+.+.++++.. ++ .++.|.. |.+.++++.||+
T Consensus 29 gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~~~~~~~~~~~~~~~~~f~lLsD~~~~~~~~ygv 108 (155)
T cd03013 29 GKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVNDPFVMKAWGKALGAKDKIRFLADGNGEFTKALGL 108 (155)
T ss_pred CCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCCHHHHHHHHHhhCCCCcEEEEECCCHHHHHHcCC
Confidence 44 55555569999999999 9999999888863 24 3555544 455678889987
Q ss_pred C------c-----ccEEEEEeCCeEEEEEeCCC
Q 030222 147 R------S-----IPTVMIFKNGEKKDTVIGAV 168 (181)
Q Consensus 147 ~------~-----~Ptl~i~~~G~~~~~~~G~~ 168 (181)
. + ....+++++|++++.+....
T Consensus 109 ~~~~~~~~~~~~~~R~~fiId~g~I~~~~~~~~ 141 (155)
T cd03013 109 TLDLSAAGGGIRSKRYALIVDDGKVKYLFVEED 141 (155)
T ss_pred CccccccCCcceeeeEEEEECCCEEEEEEEecC
Confidence 3 1 23445556898888766543
No 203
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=97.55 E-value=0.00066 Score=53.35 Aligned_cols=109 Identities=16% Similarity=0.261 Sum_probs=74.9
Q ss_pred CcccccccceeeeccchhhHHHh--hCCCcEEEEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCCC----------
Q 030222 69 GAQIVCEAQETAVEDATWQSLVL--DSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDE---------- 136 (181)
Q Consensus 69 ~~~~~~~~~~~~l~~~~~~~~~~--~~~~~vlV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~---------- 136 (181)
|..++ ......++......+.. +.++|.|++|.+-.||+=+.-...+++++++|.+.+.|+.|.+.|
T Consensus 76 G~~AP-ns~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~adFl~VYI~EAHpsDgW~~~ 154 (237)
T PF00837_consen 76 GGPAP-NSPVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDVADFLIVYIEEAHPSDGWAFG 154 (237)
T ss_pred CCCCC-CCceEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhhhheehhhHhhhCcCCCccCC
Confidence 33433 44555566665444443 347899999999999999999999999999999877777665532
Q ss_pred --------ChHH----------------------------HHHcCCCcccE-EEEEeCCeEEEEEe-CC--CCHHHHHHH
Q 030222 137 --------SPSI----------------------------ATRYGIRSIPT-VMIFKNGEKKDTVI-GA--VPKSTLTTS 176 (181)
Q Consensus 137 --------~~~l----------------------------~~~y~V~~~Pt-l~i~~~G~~~~~~~-G~--~~~~~l~~~ 176 (181)
+..+ .+.| .++|. ++++++|++++.-. |. ...+++++|
T Consensus 155 ~~~~~i~qh~sledR~~aA~~l~~~~~~~pi~vD~mdN~~~~~Y--gA~PeRlyIi~~gkv~Y~Gg~GP~~y~~~e~r~~ 232 (237)
T PF00837_consen 155 NNPYEIPQHRSLEDRLRAAKLLKEEFPQCPIVVDTMDNNFNKAY--GALPERLYIIQDGKVVYKGGPGPFGYSPEELREW 232 (237)
T ss_pred CCceeecCCCCHHHHHHHHHHHHhhCCCCCEEEEccCCHHHHHh--CCCcceEEEEECCEEEEeCCCCCCcCCHHHHHHH
Confidence 1111 1222 36886 88889999876321 22 457889999
Q ss_pred HHhh
Q 030222 177 IEKF 180 (181)
Q Consensus 177 i~~~ 180 (181)
|+++
T Consensus 233 L~~~ 236 (237)
T PF00837_consen 233 LEKY 236 (237)
T ss_pred HHhc
Confidence 9985
No 204
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=97.50 E-value=0.00052 Score=47.40 Aligned_cols=59 Identities=24% Similarity=0.397 Sum_probs=42.2
Q ss_pred EEEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCCCCh-HHHHH----cCCCcccEEEEEeCCeEEE
Q 030222 98 LVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESP-SIATR----YGIRSIPTVMIFKNGEKKD 162 (181)
Q Consensus 98 lV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~-~l~~~----y~V~~~Ptl~i~~~G~~~~ 162 (181)
+|.|-.+||++|+.+...|.+ +..+..++.+|-+++. +|-+. -|-+.+|.+++ +|+.++
T Consensus 16 VVifSKs~C~~c~~~k~ll~~----~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI--~Gk~iG 79 (104)
T KOG1752|consen 16 VVIFSKSSCPYCHRAKELLSD----LGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFI--GGKFIG 79 (104)
T ss_pred EEEEECCcCchHHHHHHHHHh----CCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEE--CCEEEc
Confidence 455889999999997766666 5556777888877665 33322 34678999877 788774
No 205
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=97.50 E-value=0.0043 Score=43.86 Aligned_cols=99 Identities=20% Similarity=0.301 Sum_probs=67.0
Q ss_pred eeeccchhhHHHhhCCCcEEEEEECCCChhhhhhhhhHHHHH-HHhc--CceEEEEEeCC-----CChHHHHHcCC--Cc
Q 030222 79 TAVEDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELS-KQYV--GKLKCYKVNTD-----ESPSIATRYGI--RS 148 (181)
Q Consensus 79 ~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~la-~~~~--~~v~~~~vd~d-----~~~~l~~~y~V--~~ 148 (181)
..+++-+|+.++. .-+.+||.|=... | --+-+..+.+++ +... ..+.+..|.+. +|.+|+++|+| ..
T Consensus 7 v~LD~~tFdKvi~-kf~~~LVKFD~ay-P-yGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~ke~ 83 (126)
T PF07912_consen 7 VPLDELTFDKVIP-KFKYVLVKFDVAY-P-YGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKIDKED 83 (126)
T ss_dssp EEESTTHHHHHGG-GSSEEEEEEEESS----CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-SCCC
T ss_pred eeccceehhheec-cCceEEEEEeccC-C-CcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCCccc
Confidence 3578899998654 4579999995443 2 223445667777 4432 35788888663 57899999999 67
Q ss_pred ccEEEEEe-CCeEEEEE--eCCCCHHHHHHHHHhh
Q 030222 149 IPTVMIFK-NGEKKDTV--IGAVPKSTLTTSIEKF 180 (181)
Q Consensus 149 ~Ptl~i~~-~G~~~~~~--~G~~~~~~l~~~i~~~ 180 (181)
+|.+.+|. +.+.-.++ .|..+.+.|..|+...
T Consensus 84 fPv~~LF~~~~~~pv~~p~~~~~t~~~l~~fvk~~ 118 (126)
T PF07912_consen 84 FPVIYLFVGDKEEPVRYPFDGDVTADNLQRFVKSN 118 (126)
T ss_dssp -SEEEEEESSTTSEEEE-TCS-S-HHHHHHHHHHT
T ss_pred CCEEEEecCCCCCCccCCccCCccHHHHHHHHHhC
Confidence 99999997 44444456 8889999999999763
No 206
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=97.28 E-value=0.00054 Score=51.74 Aligned_cols=31 Identities=26% Similarity=0.517 Sum_probs=25.1
Q ss_pred EEECCCChhhhhhhhhHHHHHHHhcCceEEE
Q 030222 100 EFWAPWCGPCRMIHPIIDELSKQYVGKLKCY 130 (181)
Q Consensus 100 ~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~ 130 (181)
+|..|+|+.|-...|.+.++..+|+.++.+-
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~~i~~~ 32 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGNKIEFR 32 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-TTEEEE
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCCcEEEE
Confidence 5899999999999999999999999876553
No 207
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.21 E-value=0.0019 Score=50.93 Aligned_cols=37 Identities=27% Similarity=0.480 Sum_probs=30.3
Q ss_pred HHHHHcCCCcccEEEEEeCCeEEEEEeCCCCHHHHHHHHHhh
Q 030222 139 SIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKF 180 (181)
Q Consensus 139 ~l~~~y~V~~~Ptl~i~~~G~~~~~~~G~~~~~~l~~~i~~~ 180 (181)
.++.++||.++||+++ +|+ .+.|..+.++|.+.|+..
T Consensus 206 ~~a~~~gv~gTPt~~v--~~~---~~~g~~~~~~l~~~i~~~ 242 (244)
T COG1651 206 KLAQQLGVNGTPTFIV--NGK---LVPGLPDLDELKAIIDEA 242 (244)
T ss_pred HHHHhcCCCcCCeEEE--CCe---eecCCCCHHHHHHHHHHh
Confidence 3667889999999988 444 678888899999998875
No 208
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=97.20 E-value=0.0029 Score=47.69 Aligned_cols=35 Identities=26% Similarity=0.464 Sum_probs=29.3
Q ss_pred HHHHcCCCcccEEEEEeCCeEEEEEeCCCCHHHHHHHHH
Q 030222 140 IATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIE 178 (181)
Q Consensus 140 l~~~y~V~~~Ptl~i~~~G~~~~~~~G~~~~~~l~~~i~ 178 (181)
.+.++||.++||+++ +|+ ..+.|....+.|.+.|+
T Consensus 159 ~a~~~gv~GvP~~vv--~g~--~~~~G~~~~~~l~~~l~ 193 (193)
T PF01323_consen 159 EARQLGVFGVPTFVV--NGK--YRFFGADRLDELEDALQ 193 (193)
T ss_dssp HHHHTTCSSSSEEEE--TTT--EEEESCSSHHHHHHHH-
T ss_pred HHHHcCCcccCEEEE--CCE--EEEECCCCHHHHHHHhC
Confidence 556789999999998 777 67889999999998874
No 209
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=97.10 E-value=0.0045 Score=46.16 Aligned_cols=65 Identities=25% Similarity=0.392 Sum_probs=54.1
Q ss_pred hhhhHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEeCC-eEEEEEeCC-CCHHHHHHHHHhh
Q 030222 112 IHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNG-EKKDTVIGA-VPKSTLTTSIEKF 180 (181)
Q Consensus 112 ~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~y~V~~~Ptl~i~~~G-~~~~~~~G~-~~~~~l~~~i~~~ 180 (181)
....+.++|+.+.+.+.|+.+. ++++++++++.. |++++++++ +....+.|. .+.+.|.+||++.
T Consensus 8 ~~~~f~~~A~~~~~~~~F~~~~---~~~~~~~~~~~~-p~i~~~k~~~~~~~~y~~~~~~~~~l~~fI~~~ 74 (184)
T PF13848_consen 8 LFEIFEEAAEKLKGDYQFGVTF---NEELAKKYGIKE-PTIVVYKKFDEKPVVYDGDKFTPEELKKFIKKN 74 (184)
T ss_dssp HHHHHHHHHHHHTTTSEEEEEE----HHHHHHCTCSS-SEEEEEECTTTSEEEESSSTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcCCcEEEEEc---HHHHHHHhCCCC-CcEEEeccCCCCceecccccCCHHHHHHHHHHh
Confidence 4567889999999889999888 568999999999 999999874 445678887 7999999999864
No 210
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=97.09 E-value=0.0053 Score=41.95 Aligned_cols=98 Identities=9% Similarity=0.215 Sum_probs=75.5
Q ss_pred eeccchhhHHHhhCCCcEEEEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCCC--ChHHHHHcCCC----cccE-E
Q 030222 80 AVEDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDE--SPSIATRYGIR----SIPT-V 152 (181)
Q Consensus 80 ~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~--~~~l~~~y~V~----~~Pt-l 152 (181)
..+-.+|..++ ...+-|+|.|..+- ..-......+.++|++..|.-.+..|||.+ ...||+++.|. --|. +
T Consensus 6 i~d~KdfKKLL-RTr~NVLvLy~ks~-k~a~~~Lk~~~~~A~~vkG~gT~~~vdCgd~e~kKLCKKlKv~~~~kp~~~~L 83 (112)
T cd03067 6 ISDHKDFKKLL-RTRNNVLVLYSKSA-KSAEALLKLLSDVAQAVKGQGTIAWIDCGDSESRKLCKKLKVDPSSKPKPVEL 83 (112)
T ss_pred ccchHHHHHHH-hhcCcEEEEEecch-hhHHHHHHHHHHHHHHhcCceeEEEEecCChHHHHHHHHHccCCCCCCCcchh
Confidence 44566787754 44556777766553 333445558889999999999999999976 67899999998 5564 7
Q ss_pred EEEeCCeEEEEEeCCCCHHHHHHHHHh
Q 030222 153 MIFKNGEKKDTVIGAVPKSTLTTSIEK 179 (181)
Q Consensus 153 ~i~~~G~~~~~~~G~~~~~~l~~~i~~ 179 (181)
.-|++|..-..|....+...+..|+++
T Consensus 84 kHYKdG~fHkdYdR~~t~kSmv~FlrD 110 (112)
T cd03067 84 KHYKDGDFHTEYNRQLTFKSMVAFLRD 110 (112)
T ss_pred hcccCCCccccccchhhHHHHHHHhhC
Confidence 777999999999989999999999864
No 211
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=97.07 E-value=0.0019 Score=55.12 Aligned_cols=57 Identities=11% Similarity=0.256 Sum_probs=42.6
Q ss_pred EEEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCCCChH---HHHH---------cCCCcccEEEEEeCCeEEE
Q 030222 98 LVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPS---IATR---------YGIRSIPTVMIFKNGEKKD 162 (181)
Q Consensus 98 lV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~---l~~~---------y~V~~~Ptl~i~~~G~~~~ 162 (181)
++.|..+|||+|++....|++. ++.+-.+|+|+++. +..+ .|.+.+|++++ +|+.+.
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~~------gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi--~~~~ig 72 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGAN------DIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFV--GDVHIG 72 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC------CCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEE--CCEEEe
Confidence 6778999999999999888774 36777888887763 2222 47889999976 666543
No 212
>PTZ00062 glutaredoxin; Provisional
Probab=97.04 E-value=0.0033 Score=48.64 Aligned_cols=61 Identities=18% Similarity=0.294 Sum_probs=42.0
Q ss_pred CCcEEEEEE----CCCChhhhhhhhhHHHHHHHhcCceEEEEEeCCCChHHH----HHcCCCcccEEEEEeCCeEEE
Q 030222 94 GSPVLVEFW----APWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIA----TRYGIRSIPTVMIFKNGEKKD 162 (181)
Q Consensus 94 ~~~vlV~F~----a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~----~~y~V~~~Ptl~i~~~G~~~~ 162 (181)
..+|+|+-. .+||++|+.....|++. ++.+..+|+++++++. +..|-..+|.+++ +|+.++
T Consensus 112 ~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~------~i~y~~~DI~~d~~~~~~l~~~sg~~TvPqVfI--~G~~IG 180 (204)
T PTZ00062 112 NHKILLFMKGSKTFPFCRFSNAVVNMLNSS------GVKYETYNIFEDPDLREELKVYSNWPTYPQLYV--NGELIG 180 (204)
T ss_pred cCCEEEEEccCCCCCCChhHHHHHHHHHHc------CCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEE--CCEEEc
Confidence 345555544 37999999998888764 3566677887776543 3346678898876 787765
No 213
>KOG2640 consensus Thioredoxin [Function unknown]
Probab=96.81 E-value=0.00045 Score=56.00 Aligned_cols=88 Identities=22% Similarity=0.347 Sum_probs=69.4
Q ss_pred CCCcEEEEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEeCCeEEEEEeCCCCHHH
Q 030222 93 SGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKST 172 (181)
Q Consensus 93 ~~~~vlV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~y~V~~~Ptl~i~~~G~~~~~~~G~~~~~~ 172 (181)
+..+|-+.||+.|||.-+.+.|.++-...-+....++..-+.-..+.+..+||+.+.|++.+. +-.--.++.|...-+.
T Consensus 75 ~~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~~i~h~~vee~~~lpsv~s~~~~~~~ps~~~~-n~t~~~~~~~~r~l~s 153 (319)
T KOG2640|consen 75 KNDYVSLLFYASWCPFSRAVRPEFDVRSSLFSSIQHFAVEESQALPSVFSSYGIHSEPSNLML-NQTCPASYRGERDLAS 153 (319)
T ss_pred cCCcccccchhcccCcccccCcccchhhhhccccccccHHHHhhcccchhccccccCCcceee-ccccchhhcccccHHH
Confidence 356899999999999999999999888877774334443344456788999999999998766 5555567889999999
Q ss_pred HHHHHHhhC
Q 030222 173 LTTSIEKFL 181 (181)
Q Consensus 173 l~~~i~~~L 181 (181)
|.++..+++
T Consensus 154 Lv~fy~~i~ 162 (319)
T KOG2640|consen 154 LVNFYTEIT 162 (319)
T ss_pred HHHHHHhhc
Confidence 999887753
No 214
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=96.42 E-value=0.035 Score=40.88 Aligned_cols=92 Identities=20% Similarity=0.290 Sum_probs=63.8
Q ss_pred HHhhCCCcEEEEEECCCChhhhhhhhhHHHHHHHhcCc-eEEEEEeCCC--------ChHH---H-HHcCCC--------
Q 030222 89 LVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGK-LKCYKVNTDE--------SPSI---A-TRYGIR-------- 147 (181)
Q Consensus 89 ~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~la~~~~~~-v~~~~vd~d~--------~~~l---~-~~y~V~-------- 147 (181)
+..-.|+++||.=.|+-|+.-- ....|+.|+++|.++ ..++..-+++ +.+| | ..|||+
T Consensus 20 l~~~~GkVlLIVNtASkCGfTp-QYegLe~Ly~ky~~~Gf~VLgFPcNQF~~QEPg~~eEI~~fC~~~YgVtFp~f~Ki~ 98 (162)
T COG0386 20 LSDYKGKVLLIVNTASKCGFTP-QYEGLEALYKKYKDKGFEVLGFPCNQFGGQEPGSDEEIAKFCQLNYGVTFPMFSKID 98 (162)
T ss_pred HHHhCCcEEEEEEcccccCCcH-hHHHHHHHHHHHhhCCcEEEeccccccccCCCCCHHHHHHHHHhccCceeeeeeEEe
Confidence 3445799999999999999766 444678888888764 4454444432 1111 1 233331
Q ss_pred ----------------------------cccEEEEEeCCeEEEEEeCCCCHHHHHHHHHhhC
Q 030222 148 ----------------------------SIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 181 (181)
Q Consensus 148 ----------------------------~~Ptl~i~~~G~~~~~~~G~~~~~~l~~~i~~~L 181 (181)
.+=-+++.++|+++.|+.-....+++...|+++|
T Consensus 99 VnG~~a~PLy~~L~~~~~g~~~~~~IkWNFtKFLvdr~G~VV~Rf~p~t~P~d~~~~Ie~lL 160 (162)
T COG0386 99 VNGKNAHPLYKYLKEQKPGKLGGKDIKWNFTKFLVDRDGNVVKRFSPKTKPEDIELAIEKLL 160 (162)
T ss_pred ecCCCCCcHHHHHHhcCCCCccCCccceeeEEEEEcCCCcEEEeeCCCCChhhHHHHHHHHh
Confidence 1223788899999999999899999999999876
No 215
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=96.33 E-value=0.041 Score=40.41 Aligned_cols=57 Identities=16% Similarity=0.337 Sum_probs=40.7
Q ss_pred EEEEECC------CChhhhhhhhhHHHHHHHhcCceEEEEEeCCCChHH----HHHcCC----CcccEEEEEeCCeEEE
Q 030222 98 LVEFWAP------WCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSI----ATRYGI----RSIPTVMIFKNGEKKD 162 (181)
Q Consensus 98 lV~F~a~------wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l----~~~y~V----~~~Ptl~i~~~G~~~~ 162 (181)
+|.|.++ +|++|+.....|+++ ++.+-.+|++.++++ .+.++- ..+|.+++ +|+.+.
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~------~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI--~G~~IG 72 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESF------RVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFV--DGRYLG 72 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHC------CCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEE--CCEEEe
Confidence 3456666 899999999888764 377788888877654 344454 68888876 676654
No 216
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=96.14 E-value=0.13 Score=34.86 Aligned_cols=75 Identities=21% Similarity=0.239 Sum_probs=54.1
Q ss_pred CCcE-EEEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEeCCeEE-EEEeCCCCHH
Q 030222 94 GSPV-LVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKK-DTVIGAVPKS 171 (181)
Q Consensus 94 ~~~v-lV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~y~V~~~Ptl~i~~~G~~~-~~~~G~~~~~ 171 (181)
.++| ++.|..+. ..|.+....++++++-.. ++.+-..+.+. ..|++.+.++|+.. -++.|.....
T Consensus 18 ~~pV~l~~f~~~~-~~~~e~~~ll~e~a~lSd-kI~~~~~~~~~-----------~~P~~~i~~~~~~~gIrF~GiP~Gh 84 (94)
T cd02974 18 ENPVELVASLDDS-EKSAELLELLEEIASLSD-KITLEEDNDDE-----------RKPSFSINRPGEDTGIRFAGIPMGH 84 (94)
T ss_pred CCCEEEEEEeCCC-cchHHHHHHHHHHHHhCC-ceEEEEecCCC-----------CCCEEEEecCCCcccEEEEecCCch
Confidence 4455 44555555 999999999999888764 56665444322 47999998777432 4789999999
Q ss_pred HHHHHHHhhC
Q 030222 172 TLTTSIEKFL 181 (181)
Q Consensus 172 ~l~~~i~~~L 181 (181)
++..+|..++
T Consensus 85 Ef~Slilai~ 94 (94)
T cd02974 85 EFTSLVLALL 94 (94)
T ss_pred hHHHHHHHhC
Confidence 9999988764
No 217
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=96.03 E-value=0.082 Score=40.40 Aligned_cols=87 Identities=18% Similarity=0.283 Sum_probs=60.3
Q ss_pred CCcEEEEEE-CCCChhhhhhhhhHHHHHHHhcC-ceEEEEEeC----------------------------CCChHHHHH
Q 030222 94 GSPVLVEFW-APWCGPCRMIHPIIDELSKQYVG-KLKCYKVNT----------------------------DESPSIATR 143 (181)
Q Consensus 94 ~~~vlV~F~-a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~----------------------------d~~~~l~~~ 143 (181)
+|.++++|| ++.-+-|-.+...+.+.++++.. ++.++.+.+ |.+.++++.
T Consensus 33 gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g~eVigvS~Ds~fsH~aW~~~~~~~~gi~~i~~PmiaD~~~~vs~~ 112 (194)
T COG0450 33 GKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRGVEVIGVSTDSVFSHKAWKATIREAGGIGKIKFPMIADPKGEIARA 112 (194)
T ss_pred CcEEEEEeccCCCCccCcchHHHHHhhhHHHHHcCCEEEEEecCcHHHHHHHHhcHHhcCCccceecceEEcCchhHHHH
Confidence 577888887 56667777788888888888864 477777766 445678999
Q ss_pred cCCCc----cc---EEEEEeCCeEEEEEeCC----CCHHHHHHHHHhh
Q 030222 144 YGIRS----IP---TVMIFKNGEKKDTVIGA----VPKSTLTTSIEKF 180 (181)
Q Consensus 144 y~V~~----~P---tl~i~~~G~~~~~~~G~----~~~~~l~~~i~~~ 180 (181)
||+-. .- +|++.++|.+.....-. +..+++...|+.+
T Consensus 113 ygvl~~~~g~a~R~~FIIDp~g~ir~~~v~~~~iGRn~dEilR~idAl 160 (194)
T COG0450 113 YGVLHPEEGLALRGTFIIDPDGVIRHILVNPLTIGRNVDEILRVIDAL 160 (194)
T ss_pred cCCcccCCCcceeEEEEECCCCeEEEEEEecCCCCcCHHHHHHHHHHH
Confidence 99853 22 46666788877644422 4567777766643
No 218
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=95.92 E-value=0.12 Score=35.23 Aligned_cols=91 Identities=12% Similarity=0.182 Sum_probs=60.8
Q ss_pred ccchhhHHHhhCCCcEEEEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEeC-CeE
Q 030222 82 EDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKN-GEK 160 (181)
Q Consensus 82 ~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~y~V~~~Ptl~i~~~-G~~ 160 (181)
+.++.+.++...+..++|-|+..--. .....+.++|..+.+.+.|+.... .++...+++. .|.++++++ .+.
T Consensus 7 ~~~~~e~~~~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~~~---~~~~~~~~~~-~~~i~l~~~~~e~ 79 (102)
T cd03066 7 SERELQAFENIEDDIKLIGYFKSEDS---EHYKAFEEAAEEFHPYIKFFATFD---SKVAKKLGLK-MNEVDFYEPFMEE 79 (102)
T ss_pred CHHHHHHHhcccCCeEEEEEECCCCC---HHHHHHHHHHHhhhcCCEEEEECc---HHHHHHcCCC-CCcEEEeCCCCCC
Confidence 34456665531455666666655333 356678888998866677755443 3677888776 688888865 444
Q ss_pred EEEE-eCCCCHHHHHHHHHh
Q 030222 161 KDTV-IGAVPKSTLTTSIEK 179 (181)
Q Consensus 161 ~~~~-~G~~~~~~l~~~i~~ 179 (181)
...+ .|..+.+.|.+||..
T Consensus 80 ~~~y~~g~~~~~~l~~fi~~ 99 (102)
T cd03066 80 PVTIPDKPYSEEELVDFVEE 99 (102)
T ss_pred CcccCCCCCCHHHHHHHHHH
Confidence 4456 778899999999975
No 219
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=95.77 E-value=0.08 Score=33.75 Aligned_cols=73 Identities=14% Similarity=0.280 Sum_probs=44.2
Q ss_pred EEEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEe--CCeEEEEEeCCCCHHHHHH
Q 030222 98 LVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFK--NGEKKDTVIGAVPKSTLTT 175 (181)
Q Consensus 98 lV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~y~V~~~Ptl~i~~--~G~~~~~~~G~~~~~~l~~ 175 (181)
+..|+.++|++|++.+-.+.+..-. ..+..+|.....++ +.-+-..+|+++... +|+.+. ....+.+
T Consensus 2 i~Ly~~~~~p~c~kv~~~L~~~gi~----y~~~~~~~~~~~~~-~~~~~~~vP~l~~~~~~~~~~l~------eS~~I~~ 70 (77)
T cd03040 2 ITLYQYKTCPFCCKVRAFLDYHGIP----YEVVEVNPVSRKEI-KWSSYKKVPILRVESGGDGQQLV------DSSVIIS 70 (77)
T ss_pred EEEEEcCCCHHHHHHHHHHHHCCCc----eEEEECCchhHHHH-HHhCCCccCEEEECCCCCccEEE------cHHHHHH
Confidence 4567889999999999766664222 22333333222333 345667899998653 244432 4566777
Q ss_pred HHHhhC
Q 030222 176 SIEKFL 181 (181)
Q Consensus 176 ~i~~~L 181 (181)
+|++.|
T Consensus 71 yL~~~~ 76 (77)
T cd03040 71 TLKTYL 76 (77)
T ss_pred HHHHHc
Confidence 777654
No 220
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=95.58 E-value=0.16 Score=32.57 Aligned_cols=72 Identities=14% Similarity=0.177 Sum_probs=42.6
Q ss_pred EEEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCCC--ChHHHHHcCCCcccEEEEEeCCeEEEEEeCCCCHHHHHH
Q 030222 98 LVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDE--SPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTT 175 (181)
Q Consensus 98 lV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~--~~~l~~~y~V~~~Ptl~i~~~G~~~~~~~G~~~~~~l~~ 175 (181)
+..|+.++|++|++..-.+.+..-. .....++.++ .+++.+..+-..+|+++...+|..+. ....+.+
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~~~gi~----y~~~~v~~~~~~~~~~~~~~p~~~vP~l~~~~~~~~l~------es~~I~~ 71 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLTELELD----VILYPCPKGSPKRDKFLEKGGKVQVPYLVDPNTGVQMF------ESADIVK 71 (77)
T ss_pred ceEecCCCCchHHHHHHHHHHcCCc----EEEEECCCChHHHHHHHHhCCCCcccEEEeCCCCeEEE------cHHHHHH
Confidence 4567788999999988777665222 2333333222 23444445667899986433454332 4566777
Q ss_pred HHHh
Q 030222 176 SIEK 179 (181)
Q Consensus 176 ~i~~ 179 (181)
+|++
T Consensus 72 yL~~ 75 (77)
T cd03041 72 YLFK 75 (77)
T ss_pred HHHH
Confidence 7765
No 221
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=95.43 E-value=0.062 Score=34.51 Aligned_cols=59 Identities=15% Similarity=0.150 Sum_probs=48.2
Q ss_pred EEEEEECCCChhhhhhhhhHHHHHHHh-cCceEEEEEeCCCChHHHHHcCCCcccEEEEE
Q 030222 97 VLVEFWAPWCGPCRMIHPIIDELSKQY-VGKLKCYKVNTDESPSIATRYGIRSIPTVMIF 155 (181)
Q Consensus 97 vlV~F~a~wC~~C~~~~p~l~~la~~~-~~~v~~~~vd~d~~~~l~~~y~V~~~Ptl~i~ 155 (181)
.+..|-+..-+..+.....+.++-+++ ++.+.+-.||..+++++++.++|-++||++-.
T Consensus 3 ~L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~~P~lAe~~~ivAtPtLvk~ 62 (72)
T cd02978 3 VLRLYVAGRTPKSERALQNLKRILEELLGGPYELEVIDVLKQPQLAEEDKIVATPTLVKV 62 (72)
T ss_pred EEEEEECCCCchHHHHHHHHHHHHHHhcCCcEEEEEEEcccCHhHHhhCCEEEechhhhc
Confidence 345555555588888888888888777 55689999999999999999999999997654
No 222
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=95.38 E-value=0.13 Score=45.09 Aligned_cols=82 Identities=12% Similarity=0.097 Sum_probs=58.9
Q ss_pred hHHHhhCCCcEEEEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEeCCeEE-EEEe
Q 030222 87 QSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKK-DTVI 165 (181)
Q Consensus 87 ~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~y~V~~~Ptl~i~~~G~~~-~~~~ 165 (181)
..+..+-.++|-+.++.+.|..|.++...++++++--+ ++.+-..+.+ ...|++.+.++|+.. -+|.
T Consensus 11 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~s~-~i~~~~~~~~-----------~~~p~~~~~~~~~~~~i~f~ 78 (517)
T PRK15317 11 KQYLELLERPIELVASLDDSEKSAELKELLEEIASLSD-KITVEEDSLD-----------VRKPSFSITRPGEDTGVRFA 78 (517)
T ss_pred HHHHHhCCCCEEEEEEeCCCchHHHHHHHHHHHHHhCC-ceEEEEccCC-----------CCCCEEEEEcCCccceEEEE
Confidence 33333335667666666689999999999999988764 5666443321 247999988777654 4888
Q ss_pred CCCCHHHHHHHHHhh
Q 030222 166 GAVPKSTLTTSIEKF 180 (181)
Q Consensus 166 G~~~~~~l~~~i~~~ 180 (181)
|.....++..+|+.+
T Consensus 79 g~P~g~Ef~s~i~~i 93 (517)
T PRK15317 79 GIPMGHEFTSLVLAL 93 (517)
T ss_pred ecCccHHHHHHHHHH
Confidence 999999999988765
No 223
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=95.37 E-value=0.12 Score=32.36 Aligned_cols=68 Identities=12% Similarity=0.176 Sum_probs=40.1
Q ss_pred EEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEeCCeEEEEEeCCCCHHHHHHHHH
Q 030222 100 EFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIE 178 (181)
Q Consensus 100 ~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~y~V~~~Ptl~i~~~G~~~~~~~G~~~~~~l~~~i~ 178 (181)
.++.++|++|++..-.+....-. +....++.++.....+..+-..+|++.. .+|+.+. ....+.++|+
T Consensus 3 Ly~~~~~p~~~rvr~~L~~~gl~----~~~~~~~~~~~~~~~~~~~~~~vP~L~~-~~~~~l~------es~aI~~yL~ 70 (71)
T cd03037 3 LYIYEHCPFCVKARMIAGLKNIP----VEQIILQNDDEATPIRMIGAKQVPILEK-DDGSFMA------ESLDIVAFID 70 (71)
T ss_pred eEecCCCcHhHHHHHHHHHcCCC----eEEEECCCCchHHHHHhcCCCccCEEEe-CCCeEee------hHHHHHHHHh
Confidence 57789999999888776664222 3334455444334445555678999854 3454432 3445555554
No 224
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=95.27 E-value=0.2 Score=36.21 Aligned_cols=73 Identities=27% Similarity=0.417 Sum_probs=54.4
Q ss_pred cEEEEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCCCChHHHHHcCCC----cccEEEEEeCCeEEEEEeCCCCHH
Q 030222 96 PVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIR----SIPTVMIFKNGEKKDTVIGAVPKS 171 (181)
Q Consensus 96 ~vlV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~y~V~----~~Ptl~i~~~G~~~~~~~G~~~~~ 171 (181)
.-++.|+.|.|+=|......++. + .+.+-.+..|+...+-++|||. +-=|.+| +|.. +.|-.+.+
T Consensus 26 ~~~~vyksPnCGCC~~w~~~mk~-----~-Gf~Vk~~~~~d~~alK~~~gIp~e~~SCHT~VI--~Gy~---vEGHVPa~ 94 (149)
T COG3019 26 TEMVVYKSPNCGCCDEWAQHMKA-----N-GFEVKVVETDDFLALKRRLGIPYEMQSCHTAVI--NGYY---VEGHVPAE 94 (149)
T ss_pred eeEEEEeCCCCccHHHHHHHHHh-----C-CcEEEEeecCcHHHHHHhcCCChhhccccEEEE--cCEE---EeccCCHH
Confidence 34677899999999988876663 2 3677778888888888889885 3335554 6665 45788999
Q ss_pred HHHHHHHh
Q 030222 172 TLTTSIEK 179 (181)
Q Consensus 172 ~l~~~i~~ 179 (181)
.+..++++
T Consensus 95 aI~~ll~~ 102 (149)
T COG3019 95 AIARLLAE 102 (149)
T ss_pred HHHHHHhC
Confidence 99888764
No 225
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=95.22 E-value=0.29 Score=37.96 Aligned_cols=89 Identities=22% Similarity=0.385 Sum_probs=62.5
Q ss_pred CCCcEEEEEECCCCh-hhhhhhhhHHHHHHHhc-C---ceEEEEEeCCCC---h--------------------------
Q 030222 93 SGSPVLVEFWAPWCG-PCRMIHPIIDELSKQYV-G---KLKCYKVNTDES---P-------------------------- 138 (181)
Q Consensus 93 ~~~~vlV~F~a~wC~-~C~~~~p~l~~la~~~~-~---~v~~~~vd~d~~---~-------------------------- 138 (181)
+|++++|+|.-+.|| -|-.....+..+.++.. . ++.++.|.+|.+ +
T Consensus 66 ~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~~~~~~~~~~~ltg~~~~~~ 145 (207)
T COG1999 66 KGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYAELNFDPRWIGLTGTPEQIE 145 (207)
T ss_pred CCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHHhcccCCCCeeeeeCCHHHHH
Confidence 689999999999995 79999988888887776 2 355665555432 2
Q ss_pred HHHHHcCCCc--c-------------cEEEEE-eCCeEEEEEeCCCCHHHHHHHHHhhC
Q 030222 139 SIATRYGIRS--I-------------PTVMIF-KNGEKKDTVIGAVPKSTLTTSIEKFL 181 (181)
Q Consensus 139 ~l~~~y~V~~--~-------------Ptl~i~-~~G~~~~~~~G~~~~~~l~~~i~~~L 181 (181)
+++++|+|.. + ..++++ .+|++...+.+..+.+++.+.|++++
T Consensus 146 ~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~~~~~~~~~~~i~~~l~~l~ 204 (207)
T COG1999 146 EVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLGTYDYGEPPEEIAADLKKLL 204 (207)
T ss_pred HHHHHhcceeeecccCCCCCceeeeeeEEEEECCCCeEEEEecCCCChHHHHHHHHHHh
Confidence 3445555542 1 123333 58999988888777888988888764
No 226
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=95.21 E-value=0.16 Score=31.93 Aligned_cols=58 Identities=9% Similarity=0.092 Sum_probs=39.1
Q ss_pred EEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCCC-ChHHHHHcCCCcccEEEEEeCCeEE
Q 030222 99 VEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDE-SPSIATRYGIRSIPTVMIFKNGEKK 161 (181)
Q Consensus 99 V~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~-~~~l~~~y~V~~~Ptl~i~~~G~~~ 161 (181)
+.|+.+||++|++..-.+.+..- .+....+|... .+++.+......+|++.. .+|..+
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl----~~e~~~v~~~~~~~~~~~~np~~~vP~L~~-~~g~~l 60 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGI----TVELREVELKNKPAEMLAASPKGTVPVLVL-GNGTVI 60 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCC----CcEEEEeCCCCCCHHHHHHCCCCCCCEEEE-CCCcEE
Confidence 45789999999998876665422 24455666543 356667777889999964 346554
No 227
>KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=95.00 E-value=0.16 Score=37.97 Aligned_cols=81 Identities=16% Similarity=0.228 Sum_probs=47.6
Q ss_pred cccCcccccccceeeeccchhhHHHhh---CCCcEEEEEE-CCCChhhhhhhhhHHHHHHHhcC-ceEEEEEeC------
Q 030222 66 LRRGAQIVCEAQETAVEDATWQSLVLD---SGSPVLVEFW-APWCGPCRMIHPIIDELSKQYVG-KLKCYKVNT------ 134 (181)
Q Consensus 66 ~~~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~vlV~F~-a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~------ 134 (181)
...|+.++.. .+-+++-+.+.+. .+++|+++|| +..-|.|-...--+..-+++++. ...++.+..
T Consensus 63 v~~Gd~iPD~----tL~dedg~sisLkkit~nk~vV~f~YP~asTPGCTkQaCgFRDnY~k~kka~aeV~GlS~D~s~sq 138 (211)
T KOG0855|consen 63 VNKGDAIPDF----TLKDEDGKSISLKKITGNKPVVLFFYPAASTPGCTKQACGFRDNYEKFKKAGAEVIGLSGDDSASQ 138 (211)
T ss_pred eecCCcCCCc----ccccCCCCeeeeeeecCCCcEEEEEeccCCCCCcccccccccccHHHHhhcCceEEeeccCchHHH
Confidence 4455555443 3334444444443 2558888888 44456777776666666666653 345555544
Q ss_pred ---------------CCChHHHHHcCCCccc
Q 030222 135 ---------------DESPSIATRYGIRSIP 150 (181)
Q Consensus 135 ---------------d~~~~l~~~y~V~~~P 150 (181)
|...++...+|+...|
T Consensus 139 KaF~sKqnlPYhLLSDpk~e~ik~lGa~k~p 169 (211)
T KOG0855|consen 139 KAFASKQNLPYHLLSDPKNEVIKDLGAPKDP 169 (211)
T ss_pred HHhhhhccCCeeeecCcchhHHHHhCCCCCC
Confidence 4455778888887644
No 228
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=94.96 E-value=0.24 Score=33.79 Aligned_cols=88 Identities=11% Similarity=0.199 Sum_probs=58.7
Q ss_pred chhhHHHhhCCCcEEEEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEeC------
Q 030222 84 ATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKN------ 157 (181)
Q Consensus 84 ~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~y~V~~~Ptl~i~~~------ 157 (181)
++.+.++ ..+++++|-|+..--. .....+.++|..+.+.+.|..... .++...|++ .|++++|+.
T Consensus 9 ~~l~~f~-~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~~~---~~~~~~~~~--~~~ivl~~p~~~~~k 79 (104)
T cd03069 9 AEFEKFL-SDDDASVVGFFEDEDS---KLLSEFLKAADTLRESFRFAHTSD---KQLLEKYGY--GEGVVLFRPPRLSNK 79 (104)
T ss_pred HHHHHHh-ccCCcEEEEEEcCCCc---hHHHHHHHHHHhhhhcCEEEEECh---HHHHHhcCC--CCceEEEechhhhcc
Confidence 3444433 3566677766655433 466778888998876677755543 367889998 688888832
Q ss_pred -CeEEEEEeCCCCHHHHHHHHHhh
Q 030222 158 -GEKKDTVIGAVPKSTLTTSIEKF 180 (181)
Q Consensus 158 -G~~~~~~~G~~~~~~l~~~i~~~ 180 (181)
.+....+.|..+.+.|.+||...
T Consensus 80 ~de~~~~y~g~~~~~~l~~fi~~~ 103 (104)
T cd03069 80 FEDSSVKFDGDLDSSKIKKFIREN 103 (104)
T ss_pred cCcccccccCcCCHHHHHHHHHhh
Confidence 12223478888899999999763
No 229
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=94.88 E-value=0.23 Score=43.58 Aligned_cols=82 Identities=16% Similarity=0.197 Sum_probs=58.3
Q ss_pred HHHhhCCCcEEEEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEeCCeEE-EEEeC
Q 030222 88 SLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKK-DTVIG 166 (181)
Q Consensus 88 ~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~y~V~~~Ptl~i~~~G~~~-~~~~G 166 (181)
.+..+-.++|-+.++.+.|..|.++...++++++-.+ ++.+...+.+. ...|++.++++|+.. -+|.|
T Consensus 12 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~s~-ki~~~~~~~~~----------~~~p~~~~~~~~~~~~i~f~g 80 (515)
T TIGR03140 12 SYLASLENPVTLVLSAGSHEKSKELLELLDEIASLSD-KISLTQNTADT----------LRKPSFTILRDGADTGIRFAG 80 (515)
T ss_pred HHHHhcCCCEEEEEEeCCCchhHHHHHHHHHHHHhCC-CeEEEEecCCc----------CCCCeEEEecCCcccceEEEe
Confidence 3333335566565555579999999999999887764 67765544332 346999888877643 47889
Q ss_pred CCCHHHHHHHHHhh
Q 030222 167 AVPKSTLTTSIEKF 180 (181)
Q Consensus 167 ~~~~~~l~~~i~~~ 180 (181)
.....++..+|+.+
T Consensus 81 ~P~g~Ef~s~i~~i 94 (515)
T TIGR03140 81 IPGGHEFTSLVLAI 94 (515)
T ss_pred cCCcHHHHHHHHHH
Confidence 98888899888765
No 230
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=94.67 E-value=0.17 Score=33.70 Aligned_cols=74 Identities=15% Similarity=0.115 Sum_probs=58.5
Q ss_pred CcEEEEEECCCChhhhhhhhhHHHHHHHh-cCceEEEEEeCCCChHHHHHcCCCcccEEEEEeCCeEEEEEeCCCC
Q 030222 95 SPVLVEFWAPWCGPCRMIHPIIDELSKQY-VGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVP 169 (181)
Q Consensus 95 ~~vlV~F~a~wC~~C~~~~p~l~~la~~~-~~~v~~~~vd~d~~~~l~~~y~V~~~Ptl~i~~~G~~~~~~~G~~~ 169 (181)
..++=.|.+..-+..+.....+.++-+++ ++.+.+-.||..++|++++.++|-++||++-.. -....++.|.++
T Consensus 3 ~~~LrLyvag~~p~S~~ai~nl~~i~e~~l~g~y~LeVIDv~~qP~lAE~~~IvATPtLIK~~-P~P~rriiGdls 77 (87)
T TIGR02654 3 TYVLKLYVAGNTPNSVRALKTLKNILETEFQGVYALKVIDVLKNPQLAEEDKILATPTLSKIL-PPPVRKIIGDLS 77 (87)
T ss_pred eEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCEEEecHHhhcC-CCCcceeecccc
Confidence 35666777888888999888898887755 556888899999999999999999999976553 445567777654
No 231
>cd02990 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. It is widely expressed in adult and embryonic tissues, and in tumor cell lines, and is localized not only in the cytoplasm where it interacts with Fas, but also in the nucleus. FAF1 contains phosphorylation sites for protein kinase CK2 within the nuclear targeting domain. Phosphorylation influences nuclear localization of FAF1 but does not affect its potentiation of Fas-induced apoptosis. Other functions have also been attributed to FAF1. It inhibits nuclear factor-kB (NF-kB) by interfering with the nuclear
Probab=94.51 E-value=1.3 Score=32.11 Aligned_cols=90 Identities=6% Similarity=0.079 Sum_probs=61.5
Q ss_pred hhCCCcEEEEEECCCChhhhhhhhhH---HHHHHHhcCceEEEEEeCCCCh------------------HHHHHcCCCcc
Q 030222 91 LDSGSPVLVEFWAPWCGPCRMIHPII---DELSKQYVGKLKCYKVNTDESP------------------SIATRYGIRSI 149 (181)
Q Consensus 91 ~~~~~~vlV~F~a~wC~~C~~~~p~l---~~la~~~~~~v~~~~vd~d~~~------------------~l~~~y~V~~~ 149 (181)
.++.|+.+|+.+.+--..+..+-..+ +++.+-++.+..+..-|+.... ..++.++...+
T Consensus 18 ~~e~K~L~VYLH~~~~~~t~~Fc~~~L~se~Vi~fl~~nfv~Wg~dvt~~~~~~~fl~~~~~~~g~~a~~~~~~~~~~~f 97 (136)
T cd02990 18 ARDRKLLAIYLHHDESVLSNVFCSQLLCAESIVQYLSQNFITWGWDMTKESNKARFLSSCTRHFGSVAAQTIRNIKTDQL 97 (136)
T ss_pred hhhcceEEEEEcCCCCccHHHHHHHHhcCHHHHHHHHcCEEEEeeeccchhhhhHHHHhhhhhhhHHHHHHHHhcCcCCC
Confidence 34588999999988765444443332 3344444556777777765432 24566789999
Q ss_pred cEEEEE-eCC---eEEEEEeCCCCHHHHHHHHHhh
Q 030222 150 PTVMIF-KNG---EKKDTVIGAVPKSTLTTSIEKF 180 (181)
Q Consensus 150 Ptl~i~-~~G---~~~~~~~G~~~~~~l~~~i~~~ 180 (181)
|.+.++ +.. +++.++.|..+.+++...|...
T Consensus 98 P~~avI~~~~~~~~vl~~i~G~~~~~ell~~L~~~ 132 (136)
T cd02990 98 PAILIIMGKRSSNEVLNVIQGNTGVDELLMRLIEA 132 (136)
T ss_pred CeEEEEEecCCceEEEEEEECCCCHHHHHHHHHHH
Confidence 987766 322 6778999999999999888653
No 232
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=94.41 E-value=0.14 Score=35.88 Aligned_cols=60 Identities=20% Similarity=0.387 Sum_probs=36.6
Q ss_pred hhhhhHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEeC------------CeEEEEEeCCCCHHH
Q 030222 111 MIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKN------------GEKKDTVIGAVPKST 172 (181)
Q Consensus 111 ~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~y~V~~~Ptl~i~~~------------G~~~~~~~G~~~~~~ 172 (181)
.+.+.+..+.+-....-.. .++.-+|.+.++|+|+.+|++++.++ .+..+...|..+.+.
T Consensus 36 ~~~~t~~~~~~l~~~~~~~--~~v~IdP~~F~~y~I~~VPa~V~~~~~~~~~~~~~~~~~~~~~~~~Gdvsl~~ 107 (113)
T PF09673_consen 36 SFKPTAKAIQELLRKDDPC--PGVQIDPRLFRQYNITAVPAFVVVKDRVCVCLSCGCCSPEDYDVVYGDVSLDY 107 (113)
T ss_pred CHHHHHHHHHHHhhccCCC--cceeEChhHHhhCCceEcCEEEEEcCcccccccCCcCCCCcceEEEccccHHH
Confidence 4444444444433321111 44455788999999999999999877 134455666665443
No 233
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=94.38 E-value=0.14 Score=36.80 Aligned_cols=47 Identities=19% Similarity=0.368 Sum_probs=34.2
Q ss_pred EeCCCChHHHHHcCCCcccEEEEEeCCe-----------EEEEEeCCCCHHHHHHHHH
Q 030222 132 VNTDESPSIATRYGIRSIPTVMIFKNGE-----------KKDTVIGAVPKSTLTTSIE 178 (181)
Q Consensus 132 vd~d~~~~l~~~y~V~~~Ptl~i~~~G~-----------~~~~~~G~~~~~~l~~~i~ 178 (181)
.+..-+|.+.++|+|+.+|++++.+++. ..+.+.|..+-+.-.+.|.
T Consensus 55 ~~v~IdP~lF~~f~I~~VPa~V~~~~~~~c~~~~~~~~~~~d~v~Gdvsl~~ALe~ia 112 (130)
T TIGR02742 55 SGVQIDPQWFKQFDITAVPAFVVVKDGLACLPEQPCPESDYDVVYGNVSLKGALEKMA 112 (130)
T ss_pred CcEEEChHHHhhcCceEcCEEEEECCCCcccccCCCCCCCeeEEEecccHHHHHHHHH
Confidence 3444578999999999999999998774 3456777777655554443
No 234
>PRK09301 circadian clock protein KaiB; Provisional
Probab=94.16 E-value=0.33 Score=33.33 Aligned_cols=75 Identities=13% Similarity=0.109 Sum_probs=60.1
Q ss_pred CCcEEEEEECCCChhhhhhhhhHHHHHHHh-cCceEEEEEeCCCChHHHHHcCCCcccEEEEEeCCeEEEEEeCCCC
Q 030222 94 GSPVLVEFWAPWCGPCRMIHPIIDELSKQY-VGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVP 169 (181)
Q Consensus 94 ~~~vlV~F~a~wC~~C~~~~p~l~~la~~~-~~~v~~~~vd~d~~~~l~~~y~V~~~Ptl~i~~~G~~~~~~~G~~~ 169 (181)
+..++=.|.+..-+..+.....+.++-+++ ++.+.+-.||+.++|++++.++|-++||++-.. -..+.+++|.++
T Consensus 5 ~~~~LrLyVag~tp~S~~ai~nL~~icE~~l~g~y~LeVIDv~~qPelAE~~~IvATPTLIK~~-P~P~rriiGDls 80 (103)
T PRK09301 5 KTYILKLYVAGNTPNSVRALKTLKNILETEFKGVYALKVIDVLKNPQLAEEDKILATPTLAKIL-PPPVRKIIGDLS 80 (103)
T ss_pred ceEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCeEEecHHhhcC-CCCcceeecccc
Confidence 456777888888899999999998887755 556888899999999999999999999966553 445567777654
No 235
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=93.85 E-value=0.56 Score=40.00 Aligned_cols=87 Identities=16% Similarity=0.247 Sum_probs=56.1
Q ss_pred CCcEEEEEECCCChhhhhhh--hhHHHHHHH-hcCceEEEEEeCC--CChHHHHHcCCCcccEEEEE-eCCeEEEEEeCC
Q 030222 94 GSPVLVEFWAPWCGPCRMIH--PIIDELSKQ-YVGKLKCYKVNTD--ESPSIATRYGIRSIPTVMIF-KNGEKKDTVIGA 167 (181)
Q Consensus 94 ~~~vlV~F~a~wC~~C~~~~--p~l~~la~~-~~~~v~~~~vd~d--~~~~l~~~y~V~~~Ptl~i~-~~G~~~~~~~G~ 167 (181)
++.++|.|-+-.-.....+. ........+ .-..+.-++|+.. ....++.-|-+-.+|.++++ ++|..+..+.|.
T Consensus 18 kkalfVVyI~gddE~s~kl~r~~w~d~~vs~~ls~~fVaIkiqags~aa~qFs~IYp~v~vPs~ffIg~sGtpLevitg~ 97 (506)
T KOG2507|consen 18 KKALFVVYISGDDEESDKLNRLTWTDASVSDSLSKYFVAIKIQAGSVAATQFSAIYPYVSVPSIFFIGFSGTPLEVITGF 97 (506)
T ss_pred CCeEEEEEEecCchHhhHHhhccchhhhhhhhhhcceEEEEeccCchhhhhhhhhcccccccceeeecCCCceeEEeecc
Confidence 44566666555445555444 222222222 2212333444433 24567889999999996666 899999999999
Q ss_pred CCHHHHHHHHHhh
Q 030222 168 VPKSTLTTSIEKF 180 (181)
Q Consensus 168 ~~~~~l~~~i~~~ 180 (181)
...|+|...|+|.
T Consensus 98 v~adeL~~~i~Kv 110 (506)
T KOG2507|consen 98 VTADELASSIEKV 110 (506)
T ss_pred ccHHHHHHHHHHH
Confidence 9999999999885
No 236
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.81 E-value=0.17 Score=32.67 Aligned_cols=57 Identities=21% Similarity=0.315 Sum_probs=38.1
Q ss_pred EEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeC--------------CCChH--HHHHcCCCcccEEEEEeCCeEEE
Q 030222 99 VEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNT--------------DESPS--IATRYGIRSIPTVMIFKNGEKKD 162 (181)
Q Consensus 99 V~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~--------------d~~~~--l~~~y~V~~~Ptl~i~~~G~~~~ 162 (181)
++|++.-||.|..+...++++--.| -.|++ |..++ -.+..|--++|.+++. +|+++.
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~v~y------d~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~~-d~~vVl 77 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLNVDY------DFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLTD-DGKVVL 77 (85)
T ss_pred eeeccccCcchHHHHHHHHHcCCCc------eeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEeC-CCcEEE
Confidence 5699999999999988887763333 33333 22222 2456677899999875 666553
No 237
>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=93.70 E-value=0.38 Score=35.91 Aligned_cols=97 Identities=22% Similarity=0.330 Sum_probs=65.4
Q ss_pred hhhHHHhhCCCcEEEEEECCCChhhhhhhhhHHHHHHHhcCc-eEEEEEeCCC--------ChH----HHHHcCCC----
Q 030222 85 TWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGK-LKCYKVNTDE--------SPS----IATRYGIR---- 147 (181)
Q Consensus 85 ~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~la~~~~~~-v~~~~vd~d~--------~~~----l~~~y~V~---- 147 (181)
+.-++-...|+++||.=-|+.|+.-..--..+++|.++|.+. +.++.--|+. +.+ +..+|+..
T Consensus 25 ~~v~l~~yrGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~Gl~ILaFPCNQFg~QEp~~n~Ei~~f~~~r~~~~f~if 104 (171)
T KOG1651|consen 25 EYVSLSQYRGKVVLIVNVASQCGLTESQYTELNELYEKYKDQGLEILAFPCNQFGNQEPGSNEEILNFVKVRYGAEFPIF 104 (171)
T ss_pred CCccHHHhCCeEEEEEEcccccccchhcchhHHHHHHHHhhCCeEEEEeccccccCcCCCCcHHHHHHHHhccCCCCccE
Confidence 333445567999999889999999988888999999999653 4444443321 111 22334320
Q ss_pred ---------------------------c----ccEEEEEeCCeEEEEEeCCCCHHHHHHHHHhhC
Q 030222 148 ---------------------------S----IPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 181 (181)
Q Consensus 148 ---------------------------~----~Ptl~i~~~G~~~~~~~G~~~~~~l~~~i~~~L 181 (181)
. +=-|++.++|+++.|+.-..+..++..-|+++|
T Consensus 105 ~KidVNG~~~~PlykfLK~~~~~~lg~~IkWNF~KFLVd~~G~vv~Ry~ptt~p~~~~~dIe~lL 169 (171)
T KOG1651|consen 105 QKIDVNGDNADPLYKFLKKVKGGPLGDDIKWNFTKFLVDKDGHVVKRFSPTTSPLDIEKDIEKLL 169 (171)
T ss_pred eEEecCCCCCchHHHHHhhcCCCcccccceeeeEEEeECCCCcEEEeeCCCCCccccchhHHHHh
Confidence 1 223777799999999987777777777777765
No 238
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=93.68 E-value=1.1 Score=28.34 Aligned_cols=69 Identities=13% Similarity=0.189 Sum_probs=48.3
Q ss_pred EEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCCC-ChHHHHHcCCCcccEEEEEeCCeEEEEEeCCCCHHHHHHHHH
Q 030222 100 EFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDE-SPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIE 178 (181)
Q Consensus 100 ~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~-~~~l~~~y~V~~~Ptl~i~~~G~~~~~~~G~~~~~~l~~~i~ 178 (181)
+++.++|++|++..-.++...- .+.+..++..+ .+++.+...-..+|++. .+|..+. +...+.++|+
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~i----~~~~~~v~~~~~~~~~~~~~p~~~vPvL~--~~g~~l~------dS~~I~~yL~ 68 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKGI----PYELVPVDPEEKRPEFLKLNPKGKVPVLV--DDGEVLT------DSAAIIEYLE 68 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHTE----EEEEEEEBTTSTSHHHHHHSTTSBSSEEE--ETTEEEE------SHHHHHHHHH
T ss_pred CCCcCCChHHHHHHHHHHHcCC----eEEEeccCcccchhHHHhhcccccceEEE--ECCEEEe------CHHHHHHHHH
Confidence 4688999999999866655421 35566666655 46677778888999997 4577654 5566777776
Q ss_pred hh
Q 030222 179 KF 180 (181)
Q Consensus 179 ~~ 180 (181)
+.
T Consensus 69 ~~ 70 (75)
T PF13417_consen 69 ER 70 (75)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 239
>PHA03075 glutaredoxin-like protein; Provisional
Probab=93.67 E-value=0.79 Score=32.13 Aligned_cols=30 Identities=30% Similarity=0.607 Sum_probs=26.0
Q ss_pred CcEEEEEECCCChhhhhhhhhHHHHHHHhc
Q 030222 95 SPVLVEFWAPWCGPCRMIHPIIDELSKQYV 124 (181)
Q Consensus 95 ~~vlV~F~a~wC~~C~~~~p~l~~la~~~~ 124 (181)
|.+++.|.-|.|+-|+.....+.++..+|.
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY~ 31 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEYD 31 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhcccc
Confidence 568999999999999999988877777764
No 240
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=93.36 E-value=1.9 Score=29.99 Aligned_cols=88 Identities=16% Similarity=0.188 Sum_probs=65.6
Q ss_pred CCcEEEEEECCCChhhhhhhhhHHHHHHHhcC--ceEEEEEeCCCChHHH----HHcCCC-cccEEEEEe--CCeEEE-E
Q 030222 94 GSPVLVEFWAPWCGPCRMIHPIIDELSKQYVG--KLKCYKVNTDESPSIA----TRYGIR-SIPTVMIFK--NGEKKD-T 163 (181)
Q Consensus 94 ~~~vlV~F~a~wC~~C~~~~p~l~~la~~~~~--~v~~~~vd~d~~~~l~----~~y~V~-~~Ptl~i~~--~G~~~~-~ 163 (181)
++..++-|-.+--+.-.++.+.+.++|+++.. ++.++.||-|+-|-+. +.|+|. .-|.+-+.+ +.+-+. .
T Consensus 20 ~g~~IvAFaee~dpdG~eFl~ilk~vA~~nt~np~LsiIWIDPD~FPllv~yWektF~IDl~~PqIGVV~vtdadSvW~~ 99 (120)
T cd03074 20 DGIHIVAFAEEEDPDGYEFLEILKEVARDNTDNPDLSIIWIDPDDFPLLVPYWEKTFGIDLFRPQIGVVNVTDADSVWME 99 (120)
T ss_pred CCceEEEEeccCCccHHHHHHHHHHHHHhcCcCCCceEEEECCccCchhhHHHHhhcCcccCCCceeeEecccccceeEe
Confidence 56788889889999999999999999999965 5999999999988665 455654 347655553 333222 2
Q ss_pred Ee---CCCCHHHHHHHHHhhC
Q 030222 164 VI---GAVPKSTLTTSIEKFL 181 (181)
Q Consensus 164 ~~---G~~~~~~l~~~i~~~L 181 (181)
.. ...+.++|..||+..|
T Consensus 100 m~~~~d~~t~~~Le~WiedVL 120 (120)
T cd03074 100 MDDDEDLPTAEELEDWIEDVL 120 (120)
T ss_pred cccccccCcHHHHHHHHHhhC
Confidence 22 3367899999999876
No 241
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=92.98 E-value=0.18 Score=39.53 Aligned_cols=39 Identities=33% Similarity=0.625 Sum_probs=32.1
Q ss_pred HHHHHcCCCcccEEEEEeCCeEEEEEeCCCCHHHHHHHHHhhC
Q 030222 139 SIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 181 (181)
Q Consensus 139 ~l~~~y~V~~~Ptl~i~~~G~~~~~~~G~~~~~~l~~~i~~~L 181 (181)
..+++.||+++|||++ +|+ ..+.|..+.+.+...|++++
T Consensus 175 ~~A~e~gI~gVP~fv~--d~~--~~V~Gaq~~~v~~~al~~~~ 213 (225)
T COG2761 175 AAAQEMGIRGVPTFVF--DGK--YAVSGAQPYDVLEDALRQLL 213 (225)
T ss_pred HHHHHCCCccCceEEE--cCc--EeecCCCCHHHHHHHHHHHH
Confidence 3678999999999998 333 35789999999999998864
No 242
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=92.79 E-value=0.24 Score=29.84 Aligned_cols=57 Identities=11% Similarity=0.092 Sum_probs=37.1
Q ss_pred EEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCCCCh--HHHHHcCCCcccEEEEEeCCeEE
Q 030222 99 VEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESP--SIATRYGIRSIPTVMIFKNGEKK 161 (181)
Q Consensus 99 V~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~--~l~~~y~V~~~Ptl~i~~~G~~~ 161 (181)
..|+.++|+.|+...-.++...- .+....++.++.. ++.+..+-..+|++.. +|+.+
T Consensus 2 ~ly~~~~~~~~~~~~~~l~~~~i----~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~--~~~~~ 60 (71)
T cd00570 2 KLYYFPGSPRSLRVRLALEEKGL----PYELVPVDLGEGEQEEFLALNPLGKVPVLED--GGLVL 60 (71)
T ss_pred EEEeCCCCccHHHHHHHHHHcCC----CcEEEEeCCCCCCCHHHHhcCCCCCCCEEEE--CCEEE
Confidence 35788999999988877766522 2344455544332 2566678889998865 36544
No 243
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=92.68 E-value=0.2 Score=38.36 Aligned_cols=43 Identities=19% Similarity=0.235 Sum_probs=35.5
Q ss_pred HHHHHcCCCcccEEEEEeCCeEEEEEeC--CCCHHHHHHHHHhhC
Q 030222 139 SIATRYGIRSIPTVMIFKNGEKKDTVIG--AVPKSTLTTSIEKFL 181 (181)
Q Consensus 139 ~l~~~y~V~~~Ptl~i~~~G~~~~~~~G--~~~~~~l~~~i~~~L 181 (181)
.+++++|+.++|||++-+||+...--.| +...+.+..++.+.+
T Consensus 165 ~l~~rlg~~GfPTl~le~ng~~~~l~~g~y~~~~~~~~arl~~~~ 209 (212)
T COG3531 165 RLMQRLGAAGFPTLALERNGTMYVLGTGAYFGSPDAWLARLAQRL 209 (212)
T ss_pred HHHHHhccCCCCeeeeeeCCceEeccCCcccCCcHHHHHHHHHHH
Confidence 4788999999999999999998776667 566788888887653
No 244
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=92.67 E-value=0.65 Score=37.15 Aligned_cols=88 Identities=18% Similarity=0.219 Sum_probs=58.2
Q ss_pred CCCcEEEEEECCCCh-hhhhhhhhHHHHHHHhcCc----e--EEEEEeCCCC--------------------------hH
Q 030222 93 SGSPVLVEFWAPWCG-PCRMIHPIIDELSKQYVGK----L--KCYKVNTDES--------------------------PS 139 (181)
Q Consensus 93 ~~~~vlV~F~a~wC~-~C~~~~p~l~~la~~~~~~----v--~~~~vd~d~~--------------------------~~ 139 (181)
.||.++++|.-+.|| -|-.+...+..+.++...+ + .|+.||-..+ .+
T Consensus 138 ~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~~eY~~eF~pkllGLTGT~eqvk~ 217 (280)
T KOG2792|consen 138 LGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVVAEYVSEFHPKLLGLTGTTEQVKQ 217 (280)
T ss_pred ccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccCCHHHHHHHHHhcChhhhcccCCHHHHHH
Confidence 389999999999997 6887777776666655443 2 3344444222 24
Q ss_pred HHHHcCCCccc-------------EEEEE---eCCeEEEEEeCCCCHHHHHHHHHhh
Q 030222 140 IATRYGIRSIP-------------TVMIF---KNGEKKDTVIGAVPKSTLTTSIEKF 180 (181)
Q Consensus 140 l~~~y~V~~~P-------------tl~i~---~~G~~~~~~~G~~~~~~l~~~i~~~ 180 (181)
+++.|.|-.-+ ++++| .+|+.++.+.-..+.+++.+.|.+.
T Consensus 218 vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~~GrN~~~~~~~~~I~~~ 274 (280)
T KOG2792|consen 218 VAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVDYYGRNYDADELADSILKH 274 (280)
T ss_pred HHHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcceehhhcccCCHHHHHHHHHHH
Confidence 66777653211 23333 6899998777778899998888764
No 245
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=92.57 E-value=3.2 Score=33.13 Aligned_cols=74 Identities=24% Similarity=0.405 Sum_probs=42.4
Q ss_pred cceeeeccchhhHHHhhCCCcEEEEEECCC------ChhhhhhhhhHHHHHHHhcCceEEEEEeCCCChHHHHH----cC
Q 030222 76 AQETAVEDATWQSLVLDSGSPVLVEFWAPW------CGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATR----YG 145 (181)
Q Consensus 76 ~~~~~l~~~~~~~~~~~~~~~vlV~F~a~w------C~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~----y~ 145 (181)
...+.+.+.+-+-+. .=+++|-|.+|.+- -..=+.+...|++.+..-++++++-.+|.+.+++..++ ||
T Consensus 7 ~k~ysLS~~T~~~L~-~L~~pV~i~~~~s~~l~~~~~~~~~~v~~lL~~y~~~s~g~i~v~~iDp~~~~~~~~~~~~~~G 85 (271)
T PF09822_consen 7 NKRYSLSDQTKKVLK-SLDEPVTITVYFSRELPPELSPLRKQVRDLLDEYARYSPGKIKVEFIDPDENPSEAEEKAKEYG 85 (271)
T ss_pred CCCccCCHHHHHHHH-hCCCCEEEEEEECCCcchhhhHHHHHHHHHHHHHHHhCCCceEEEEECCCCChHHHHHHHHhcC
Confidence 344455555554332 23556666666554 22333333334443333344799999999888877666 88
Q ss_pred CCccc
Q 030222 146 IRSIP 150 (181)
Q Consensus 146 V~~~P 150 (181)
|..++
T Consensus 86 i~~~~ 90 (271)
T PF09822_consen 86 IQPVQ 90 (271)
T ss_pred CCccc
Confidence 87733
No 246
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=92.11 E-value=2.4 Score=29.74 Aligned_cols=76 Identities=12% Similarity=0.053 Sum_probs=50.5
Q ss_pred CChhhhhhhhhHHHHHHHhcC-ceEEEEE-eCCCCh-----------HHHHHcCCC--cccEEEEEeCCeEEEEEeCCCC
Q 030222 105 WCGPCRMIHPIIDELSKQYVG-KLKCYKV-NTDESP-----------SIATRYGIR--SIPTVMIFKNGEKKDTVIGAVP 169 (181)
Q Consensus 105 wC~~C~~~~p~l~~la~~~~~-~v~~~~v-d~d~~~-----------~l~~~y~V~--~~Ptl~i~~~G~~~~~~~G~~~ 169 (181)
.-+.-+.....+.+....+.. ++.++.+ +..... .+.++|++. ++-.+++-++|.+..++....+
T Consensus 21 ~d~~~~~q~~~L~~~~~~l~eRdi~v~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~~~~f~~vLiGKDG~vK~r~~~p~~ 100 (118)
T PF13778_consen 21 DDPRYQQQLEELQNNRCGLDERDIVVIVITGDGARSPGKPLSPEDIQALRKRLRIPPGGFTVVLIGKDGGVKLRWPEPID 100 (118)
T ss_pred CCHHHHHHHHHHHhhhhccccCceEEEEEeCCccccccCcCCHHHHHHHHHHhCCCCCceEEEEEeCCCcEEEecCCCCC
Confidence 444555555555554444443 3555555 222222 788999965 4335666699999999999999
Q ss_pred HHHHHHHHHhh
Q 030222 170 KSTLTTSIEKF 180 (181)
Q Consensus 170 ~~~l~~~i~~~ 180 (181)
.++|.+.|+.+
T Consensus 101 ~~~lf~~ID~M 111 (118)
T PF13778_consen 101 PEELFDTIDAM 111 (118)
T ss_pred HHHHHHHHhCC
Confidence 99999999864
No 247
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=91.93 E-value=0.31 Score=30.32 Aligned_cols=57 Identities=14% Similarity=0.192 Sum_probs=37.8
Q ss_pred EEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCC----CChHHHHHcCCCcccEEEEEeCCeE
Q 030222 99 VEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTD----ESPSIATRYGIRSIPTVMIFKNGEK 160 (181)
Q Consensus 99 V~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d----~~~~l~~~y~V~~~Ptl~i~~~G~~ 160 (181)
..|+.++|++|+...-.+.+..-. .....++.. ..+++.+......+|++... +|+.
T Consensus 2 ~Ly~~~~s~~~~~~~~~L~~~~l~----~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~-~~~~ 62 (74)
T cd03051 2 KLYDSPTAPNPRRVRIFLAEKGID----VPLVTVDLAAGEQRSPEFLAKNPAGTVPVLELD-DGTV 62 (74)
T ss_pred EEEeCCCCcchHHHHHHHHHcCCC----ceEEEeecccCccCCHHHHhhCCCCCCCEEEeC-CCCE
Confidence 467889999999999877765322 334455542 23456666777899999753 4544
No 248
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=91.82 E-value=0.18 Score=34.49 Aligned_cols=75 Identities=9% Similarity=0.153 Sum_probs=41.9
Q ss_pred EEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCCCCh----HHHHHcCCCcccEEEEE-eCCeEEEEE----eCCCC
Q 030222 99 VEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESP----SIATRYGIRSIPTVMIF-KNGEKKDTV----IGAVP 169 (181)
Q Consensus 99 V~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~----~l~~~y~V~~~Ptl~i~-~~G~~~~~~----~G~~~ 169 (181)
..|+.++|++|+.....+++. ++.+-.+|+.+++ ++.+-++-.+.+.--++ ++|...... ...++
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~------~i~~~~idi~~~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~l~~~~~~~ls 75 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEEH------GIEYEFIDYLKEPPTKEELKELLAKLGLGVEDLFNTRGTPYRKLGLADKDELS 75 (105)
T ss_pred EEEECCCCHHHHHHHHHHHHc------CCCcEEEeeccCCCCHHHHHHHHHhcCCCHHHHHhcCCchHHHcCCccccCCC
Confidence 568999999999998777763 3555566664432 34443444343332222 343322211 23456
Q ss_pred HHHHHHHHHh
Q 030222 170 KSTLTTSIEK 179 (181)
Q Consensus 170 ~~~l~~~i~~ 179 (181)
.+++.+.|.+
T Consensus 76 ~~e~~~~l~~ 85 (105)
T cd02977 76 DEEALELMAE 85 (105)
T ss_pred HHHHHHHHHh
Confidence 7777777654
No 249
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=91.58 E-value=0.1 Score=36.21 Aligned_cols=55 Identities=20% Similarity=0.385 Sum_probs=33.5
Q ss_pred EEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCCCCh----HHHHHcCCCcccEEEEE-eCCe
Q 030222 99 VEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESP----SIATRYGIRSIPTVMIF-KNGE 159 (181)
Q Consensus 99 V~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~----~l~~~y~V~~~Ptl~i~-~~G~ 159 (181)
..|+.++|+.|++....|++. ++.+-.+|..+++ ++.+-++-.+.|.--++ ++|+
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~------~i~~~~idi~~~~~~~~el~~~~~~~~~~~~~l~~~~~~ 61 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDEH------GVDYTAIDIVEEPPSKEELKKWLEKSGLPLKKFFNTSGK 61 (111)
T ss_pred EEEECCCCHHHHHHHHHHHHc------CCceEEecccCCcccHHHHHHHHHHcCCCHHHHHhcCCc
Confidence 468999999999999777663 3566666665443 33333344445543333 3443
No 250
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=91.50 E-value=1.1 Score=27.82 Aligned_cols=69 Identities=10% Similarity=0.133 Sum_probs=41.9
Q ss_pred EEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCCC-ChHHHHHcCCCcccEEEEEeCCeEEEEEeCCCCHHHHHHHH
Q 030222 99 VEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDE-SPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSI 177 (181)
Q Consensus 99 V~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~-~~~l~~~y~V~~~Ptl~i~~~G~~~~~~~G~~~~~~l~~~i 177 (181)
..|+.++|+.|++..-.+.+..-+ .....+|... .+++.+......+|++. .+|..+ .....+.++|
T Consensus 2 ~ly~~~~~~~~~~v~~~l~~~gi~----~~~~~v~~~~~~~~~~~~~p~~~vP~l~--~~~~~l------~es~aI~~yL 69 (73)
T cd03059 2 TLYSGPDDVYSHRVRIVLAEKGVS----VEIIDVDPDNPPEDLAELNPYGTVPTLV--DRDLVL------YESRIIMEYL 69 (73)
T ss_pred EEEECCCChhHHHHHHHHHHcCCc----cEEEEcCCCCCCHHHHhhCCCCCCCEEE--ECCEEE------EcHHHHHHHH
Confidence 467889999999998776554322 3334455443 34555666677999774 345433 2445566666
Q ss_pred Hh
Q 030222 178 EK 179 (181)
Q Consensus 178 ~~ 179 (181)
++
T Consensus 70 ~~ 71 (73)
T cd03059 70 DE 71 (73)
T ss_pred Hh
Confidence 54
No 251
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=91.36 E-value=0.72 Score=38.86 Aligned_cols=87 Identities=16% Similarity=0.268 Sum_probs=65.0
Q ss_pred hHHHhhCCCcEEEEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEeCCeEEEEEeC
Q 030222 87 QSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIG 166 (181)
Q Consensus 87 ~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~y~V~~~Ptl~i~~~G~~~~~~~G 166 (181)
+++..-++..-+--|++-.|..|-.....++-++--.+ ++.-..||....++-.+.-+|+++||+++ ||+... .|
T Consensus 109 eqik~i~g~~~FETy~SltC~nCPDVVQALN~msvlNp-~I~H~~IdGa~Fq~Evear~IMaVPtvfl--nGe~fg--~G 183 (520)
T COG3634 109 EQIKAIDGDFHFETYFSLTCHNCPDVVQALNLMSVLNP-RIKHTAIDGALFQDEVEARNIMAVPTVFL--NGEEFG--QG 183 (520)
T ss_pred HHHHhcCCceeEEEEEEeeccCChHHHHHHHHHHhcCC-CceeEEecchhhHhHHHhccceecceEEE--cchhhc--cc
Confidence 33333456677778889999999999988887655544 68888888877777777789999999876 787764 36
Q ss_pred CCCHHHHHHHHH
Q 030222 167 AVPKSTLTTSIE 178 (181)
Q Consensus 167 ~~~~~~l~~~i~ 178 (181)
.++-+++.+.|+
T Consensus 184 Rmtleeilaki~ 195 (520)
T COG3634 184 RMTLEEILAKID 195 (520)
T ss_pred ceeHHHHHHHhc
Confidence 677777766654
No 252
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=91.12 E-value=0.24 Score=37.44 Aligned_cols=38 Identities=26% Similarity=0.490 Sum_probs=30.2
Q ss_pred ChHHHHHcCCCcccEEEEEeCCeEEEEEeCCCCHHHHHHHHH
Q 030222 137 SPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIE 178 (181)
Q Consensus 137 ~~~l~~~y~V~~~Ptl~i~~~G~~~~~~~G~~~~~~l~~~i~ 178 (181)
+.+.+.++||.++||+++ +|+. .+.|..+.+.+.+.|+
T Consensus 164 ~~~~a~~~gv~G~Pt~vv--~g~~--~~~G~~~~~~~~~~i~ 201 (201)
T cd03024 164 DEARARQLGISGVPFFVF--NGKY--AVSGAQPPEVFLQALR 201 (201)
T ss_pred HHHHHHHCCCCcCCEEEE--CCeE--eecCCCCHHHHHHHhC
Confidence 345678899999999998 5653 4789999999988764
No 253
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=89.99 E-value=0.79 Score=34.36 Aligned_cols=45 Identities=24% Similarity=0.301 Sum_probs=35.4
Q ss_pred CCCcEEEEEECCCC-hhhhhhhhhHHHHHHHhc---CceEEEEEeCCCC
Q 030222 93 SGSPVLVEFWAPWC-GPCRMIHPIIDELSKQYV---GKLKCYKVNTDES 137 (181)
Q Consensus 93 ~~~~vlV~F~a~wC-~~C~~~~p~l~~la~~~~---~~v~~~~vd~d~~ 137 (181)
.||+++|.|.-+.| ..|-.....+.++.+++. .++.++.|.+|..
T Consensus 51 ~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP~ 99 (174)
T PF02630_consen 51 KGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDPE 99 (174)
T ss_dssp TTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESSTT
T ss_pred CCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCCC
Confidence 58999999999999 589988888888777664 3588888888743
No 254
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=89.87 E-value=0.64 Score=32.42 Aligned_cols=34 Identities=12% Similarity=0.298 Sum_probs=25.9
Q ss_pred EEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCCCCh
Q 030222 99 VEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESP 138 (181)
Q Consensus 99 V~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~ 138 (181)
..|+.++|+.|+.....+++. ++.+-.+|..+++
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~------~i~~~~idi~~~~ 35 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEAN------GIEYQFIDIGEDG 35 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHHc------CCceEEEecCCCh
Confidence 468999999999999877762 3667777776654
No 255
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=89.74 E-value=0.63 Score=29.09 Aligned_cols=56 Identities=23% Similarity=0.334 Sum_probs=37.0
Q ss_pred EEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCCC----ChHHHHHcCCCcccEEEEEeCCeE
Q 030222 99 VEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDE----SPSIATRYGIRSIPTVMIFKNGEK 160 (181)
Q Consensus 99 V~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~----~~~l~~~y~V~~~Ptl~i~~~G~~ 160 (181)
..|+.++|+.|++..-.+.+..- .+....++..+ .+++.+......+|++.. +|..
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~gi----~~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~--~~~~ 61 (74)
T cd03045 2 DLYYLPGSPPCRAVLLTAKALGL----ELNLKEVNLMKGEHLKPEFLKLNPQHTVPTLVD--NGFV 61 (74)
T ss_pred EEEeCCCCCcHHHHHHHHHHcCC----CCEEEEecCccCCcCCHHHHhhCcCCCCCEEEE--CCEE
Confidence 46889999999988876666422 24445555422 356666667779999963 4544
No 256
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=89.26 E-value=0.68 Score=33.16 Aligned_cols=34 Identities=24% Similarity=0.386 Sum_probs=24.1
Q ss_pred EEEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCCCC
Q 030222 98 LVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDES 137 (181)
Q Consensus 98 lV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~ 137 (181)
+..|+.+||+.|+.....|++. ++.+-.+|+.++
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~------gi~~~~idi~~~ 35 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEH------DIPFTERNIFSS 35 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc------CCCcEEeeccCC
Confidence 5678999999999988776654 245555665443
No 257
>KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=89.09 E-value=2.7 Score=31.80 Aligned_cols=78 Identities=17% Similarity=0.317 Sum_probs=45.8
Q ss_pred hhhHHHhh--CCCcEEEEEE-CCCChhhhhhhhhHHHHHHHhcC-ceEEEEEeC--------------------------
Q 030222 85 TWQSLVLD--SGSPVLVEFW-APWCGPCRMIHPIIDELSKQYVG-KLKCYKVNT-------------------------- 134 (181)
Q Consensus 85 ~~~~~~~~--~~~~vlV~F~-a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~-------------------------- 134 (181)
.|+.+.+. .++.|++.|| .++---|-..--.+.+.++++.. +..++.+.+
T Consensus 22 ~f~e~~L~dy~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~~n~eVig~S~DS~fshlAW~ntprk~gGlg~~~iPl 101 (196)
T KOG0852|consen 22 EFKEIKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRKLNTEVLGISTDSVFSHLAWINTPRKQGGLGPLNIPL 101 (196)
T ss_pred cceEEeehhhcccEEEEEecCCceeeECchhhhhhhhhHHHHHhcCCeEEEEeccchhhhhhHhcCchhhCCcCccccce
Confidence 44443333 4788998888 44444554455555555655543 234444433
Q ss_pred --CCChHHHHHcCC----Cccc---EEEEEeCCeEEE
Q 030222 135 --DESPSIATRYGI----RSIP---TVMIFKNGEKKD 162 (181)
Q Consensus 135 --d~~~~l~~~y~V----~~~P---tl~i~~~G~~~~ 162 (181)
|.+.+|++.||| .+++ .+++.++|-...
T Consensus 102 lsD~~~~IsrdyGvL~~~~G~~lRglfIId~~gi~R~ 138 (196)
T KOG0852|consen 102 LSDLNHEISRDYGVLKEDEGIALRGLFIIDPDGILRQ 138 (196)
T ss_pred eeccchhhHHhcCceecCCCcceeeeEEEccccceEE
Confidence 556689999998 4676 244446666554
No 258
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=88.41 E-value=6.2 Score=27.02 Aligned_cols=90 Identities=8% Similarity=0.087 Sum_probs=55.5
Q ss_pred cchhhHHHhhCCCcEEEEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEeCC----
Q 030222 83 DATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNG---- 158 (181)
Q Consensus 83 ~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~y~V~~~Ptl~i~~~G---- 158 (181)
.++.+.++...++.++|-|+..--. .....+.++|+.+.+.+.|+.... .++..++++.. |.+++|+.-
T Consensus 8 ~~ele~f~~~~~~~~VVG~F~~~~~---~~~~~F~~vA~~~Rdd~~F~~t~~---~~~~~~~~~~~-~~vvl~rp~~~~~ 80 (107)
T cd03068 8 LKQVQEFLRDGDDVIIIGVFSGEED---PAYQLYQDAANSLREDYKFHHTFD---SEIFKSLKVSP-GQLVVFQPEKFQS 80 (107)
T ss_pred HHHHHHHHhcCCCEEEEEEECCCCC---HHHHHHHHHHHhcccCCEEEEECh---HHHHHhcCCCC-CceEEECcHHHhh
Confidence 3445554444436666666655433 356678889999977788765543 37788888864 556666221
Q ss_pred ---eEEEEEeCC-CCHHH-HHHHHHh
Q 030222 159 ---EKKDTVIGA-VPKST-LTTSIEK 179 (181)
Q Consensus 159 ---~~~~~~~G~-~~~~~-l~~~i~~ 179 (181)
+....|.|. ...+. |.+||++
T Consensus 81 k~e~~~~~~~~~~~~~~~~~~~f~~~ 106 (107)
T cd03068 81 KYEPKSHVLNKKDSTSEDELKDFFKE 106 (107)
T ss_pred hcCcceeeeeccccchHHHHHHHHhc
Confidence 222345666 56555 9999875
No 259
>PF07689 KaiB: KaiB domain; InterPro: IPR011649 The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria. Mutations in both proteins have been reported to alter or abolish circadian rhythmicity. KaiB adopts an alpha-beta meander motif and is found to be a dimer [].; GO: 0048511 rhythmic process; PDB: 1T4Y_A 1T4Z_A 1R5P_B 2QKE_F 1VGL_A 1WWJ_D.
Probab=87.93 E-value=0.16 Score=33.46 Aligned_cols=52 Identities=19% Similarity=0.248 Sum_probs=41.7
Q ss_pred CCCChhhhhhhhhHHHHHHHh-cCceEEEEEeCCCChHHHHHcCCCcccEEEE
Q 030222 103 APWCGPCRMIHPIIDELSKQY-VGKLKCYKVNTDESPSIATRYGIRSIPTVMI 154 (181)
Q Consensus 103 a~wC~~C~~~~p~l~~la~~~-~~~v~~~~vd~d~~~~l~~~y~V~~~Ptl~i 154 (181)
+..-+..+.....+..+.+++ ++.+.+-.||+.+++++++.++|-++||++-
T Consensus 5 ~g~~~~s~~a~~~l~~l~~~~l~~~~~LeVIDv~~~P~lAe~~~ivAtPtLik 57 (82)
T PF07689_consen 5 AGRTPSSERAIENLRRLCEEYLGGRYELEVIDVLEQPELAEEDRIVATPTLIK 57 (82)
T ss_dssp SSBHHHHHHHHHHHHHHHHCHCTTTEEEEEEETTTSHSHHTTTEEECHHHHHT
T ss_pred CCCChHHHHHHHHHHHHHHhhCCCcEEEEEEEcccCHhHHhHCCeeecceEee
Confidence 334455667777888888775 4579999999999999999999999999753
No 260
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=87.92 E-value=0.64 Score=31.96 Aligned_cols=34 Identities=3% Similarity=0.043 Sum_probs=24.4
Q ss_pred EEEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCCCC
Q 030222 98 LVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDES 137 (181)
Q Consensus 98 lV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~ 137 (181)
+..|+.+||+.|+.....|++- ++.+-.+|..++
T Consensus 1 i~iy~~~~C~~crka~~~L~~~------~i~~~~~di~~~ 34 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEAR------GVAYTFHDYRKD 34 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHHc------CCCeEEEecccC
Confidence 3578999999999998777664 355556665544
No 261
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=87.44 E-value=6.2 Score=31.21 Aligned_cols=59 Identities=12% Similarity=0.221 Sum_probs=43.8
Q ss_pred ccceeeeccchhhHHHhhCCCcEEEEEECCCChhhhhhhhhHHHHHHHhcC----ceEEEEEeCC
Q 030222 75 EAQETAVEDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVG----KLKCYKVNTD 135 (181)
Q Consensus 75 ~~~~~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~la~~~~~----~v~~~~vd~d 135 (181)
....+.+.+.+ -+....|.++||-+-..+|..|......|+.|..++.. ++.|+.||--
T Consensus 9 ~~p~W~i~~~~--pm~~~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~ 71 (238)
T PF04592_consen 9 PPPPWKIGGQD--PMLNSLGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQ 71 (238)
T ss_pred CCCCceECCch--HhhhcCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCC
Confidence 34455555543 33445688999999999999999999999888866643 5888888864
No 262
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=87.21 E-value=0.76 Score=34.34 Aligned_cols=35 Identities=23% Similarity=0.383 Sum_probs=26.9
Q ss_pred hHHHHHcCCCcccEEEEEeCCeEEEEEeCCCCHHHHHHHH
Q 030222 138 PSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSI 177 (181)
Q Consensus 138 ~~l~~~y~V~~~Ptl~i~~~G~~~~~~~G~~~~~~l~~~i 177 (181)
...+.++||.++||+++ ||+ .+.|....+.+.+.|
T Consensus 157 ~~~a~~~gi~gvPtfvv--~g~---~~~G~~~l~~~~~~l 191 (192)
T cd03022 157 TEEAIARGVFGVPTFVV--DGE---MFWGQDRLDMLEEAL 191 (192)
T ss_pred HHHHHHcCCCcCCeEEE--CCe---eecccccHHHHHHHh
Confidence 35677899999999998 675 456887777777665
No 263
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=86.90 E-value=0.88 Score=31.28 Aligned_cols=57 Identities=19% Similarity=0.465 Sum_probs=39.1
Q ss_pred EECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCCCChHHHHHcCCC--cccE-EEEEeCCe
Q 030222 101 FWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIR--SIPT-VMIFKNGE 159 (181)
Q Consensus 101 F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~y~V~--~~Pt-l~i~~~G~ 159 (181)
||..+|+.|......+.+. ...+.+.++.+..++..++.+.+++. ..-+ +.+.++|+
T Consensus 2 ~YDg~C~lC~~~~~~l~~~--d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~ 61 (114)
T PF04134_consen 2 FYDGDCPLCRREVRFLRRR--DRGGRLRFVDIQSEPDQALLASYGISPEDADSRLHLIDDGE 61 (114)
T ss_pred EECCCCHhHHHHHHHHHhc--CCCCCEEEEECCChhhhhHHHhcCcCHHHHcCeeEEecCCC
Confidence 7999999999999888876 22234666666445555667778875 3444 44357887
No 264
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=86.69 E-value=0.97 Score=33.82 Aligned_cols=28 Identities=36% Similarity=0.808 Sum_probs=25.5
Q ss_pred EEEEECCCChhhhhhhhhHHHHHHHhcC
Q 030222 98 LVEFWAPWCGPCRMIHPIIDELSKQYVG 125 (181)
Q Consensus 98 lV~F~a~wC~~C~~~~p~l~~la~~~~~ 125 (181)
+.+|+.+.||.|-...+.+.++.++++.
T Consensus 3 i~~~~D~~cp~c~~~~~~l~~l~~~~~~ 30 (193)
T cd03025 3 LYYFIDPLCGWCYGFEPLLEKLKEEYGG 30 (193)
T ss_pred EEEEECCCCchhhCchHHHHHHHHHhCC
Confidence 6789999999999999999999999843
No 265
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=86.45 E-value=2.5 Score=33.72 Aligned_cols=57 Identities=14% Similarity=0.145 Sum_probs=39.3
Q ss_pred hhCCCcEEEEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCCCChHHHHHcC-CCcccEEEEE
Q 030222 91 LDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYG-IRSIPTVMIF 155 (181)
Q Consensus 91 ~~~~~~vlV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~y~-V~~~Ptl~i~ 155 (181)
...||+.+++..+.|||+|-...=.|-....+|.. +.+..-..|. +. --.+|||++.
T Consensus 55 ~~~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfGn-~~l~~~~S~~-------~d~~pn~Ptl~F~ 112 (249)
T PF06053_consen 55 APNGKPEVIFIGWEGCPYCAAESWALYIALSRFGN-FSLEYHYSDP-------YDNYPNTPTLIFN 112 (249)
T ss_pred CCCCeeEEEEEecccCccchhhHHHHHHHHHhcCC-eeeEEeecCc-------ccCCCCCCeEEEe
Confidence 35689999999999999999887766666677764 4333333222 22 2467887766
No 266
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=85.35 E-value=4.5 Score=26.49 Aligned_cols=59 Identities=8% Similarity=0.143 Sum_probs=38.0
Q ss_pred EEEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCCCC-hHHHHHcCCCcccEEEEEeCCeEE
Q 030222 98 LVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDES-PSIATRYGIRSIPTVMIFKNGEKK 161 (181)
Q Consensus 98 lV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~-~~l~~~y~V~~~Ptl~i~~~G~~~ 161 (181)
+..|+.+.|++|+...-.+.+..- .+....++.+.. +++.+......+|++... +|..+
T Consensus 19 ~~Ly~~~~sp~~~kv~~~L~~~gl----~~~~~~v~~~~~~~~~~~~np~~~vPvL~~~-~g~~l 78 (89)
T cd03055 19 IRLYSMRFCPYAQRARLVLAAKNI----PHEVININLKDKPDWFLEKNPQGKVPALEID-EGKVV 78 (89)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCC----CCeEEEeCCCCCcHHHHhhCCCCCcCEEEEC-CCCEE
Confidence 555778889999988766655422 244555665443 346666677899998752 35543
No 267
>PRK12559 transcriptional regulator Spx; Provisional
Probab=84.32 E-value=1.4 Score=31.64 Aligned_cols=22 Identities=23% Similarity=0.504 Sum_probs=18.1
Q ss_pred EEEEECCCChhhhhhhhhHHHH
Q 030222 98 LVEFWAPWCGPCRMIHPIIDEL 119 (181)
Q Consensus 98 lV~F~a~wC~~C~~~~p~l~~l 119 (181)
+..|+.++|+.|+.....|++.
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~ 23 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEEN 23 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc
Confidence 5678999999999988766653
No 268
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=84.11 E-value=8.2 Score=24.24 Aligned_cols=57 Identities=12% Similarity=0.142 Sum_probs=37.5
Q ss_pred EEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCC----CChHHHHHcCCCcccEEEEEeCCeEE
Q 030222 99 VEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTD----ESPSIATRYGIRSIPTVMIFKNGEKK 161 (181)
Q Consensus 99 V~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d----~~~~l~~~y~V~~~Ptl~i~~~G~~~ 161 (181)
..|+.+.|+.|++.+-.+.+..- ...+..+|.. ..+++.+...-..+|++. .+|+.+
T Consensus 2 ~ly~~~~s~~s~rv~~~L~e~gl----~~e~~~v~~~~~~~~~~~~~~inP~g~vP~L~--~~g~~l 62 (73)
T cd03052 2 VLYHWTQSFSSQKVRLVIAEKGL----RCEEYDVSLPLSEHNEPWFMRLNPTGEVPVLI--HGDNII 62 (73)
T ss_pred EEecCCCCccHHHHHHHHHHcCC----CCEEEEecCCcCccCCHHHHHhCcCCCCCEEE--ECCEEE
Confidence 46788899999888755555432 3455566552 234577667778999985 367654
No 269
>PRK13730 conjugal transfer pilus assembly protein TrbC; Provisional
Probab=84.06 E-value=2.5 Score=32.67 Aligned_cols=37 Identities=27% Similarity=0.600 Sum_probs=28.0
Q ss_pred CChHHHHHcCCCcccEEEEEeCCeEEEEEeCCCCHHHH
Q 030222 136 ESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTL 173 (181)
Q Consensus 136 ~~~~l~~~y~V~~~Ptl~i~~~G~~~~~~~G~~~~~~l 173 (181)
-+|.+.++|+|+.+|+|++... .-.+.+.|-++-+.-
T Consensus 150 IDP~lF~~F~I~~VPafVv~C~-~~yD~I~GNIsl~~A 186 (212)
T PRK13730 150 IDPTLFSQYGIRSVPALVVFCS-QGYDIIRGNLRVGQA 186 (212)
T ss_pred ECHHHHHhcCCccccEEEEEcC-CCCCEEEecccHHHH
Confidence 4789999999999999999854 344677777665433
No 270
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=83.96 E-value=2.2 Score=29.60 Aligned_cols=34 Identities=18% Similarity=0.356 Sum_probs=24.4
Q ss_pred EEEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCCCC
Q 030222 98 LVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDES 137 (181)
Q Consensus 98 lV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~ 137 (181)
+..|+.++|+.|+.....|++. ++.+-.+|..++
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~------gi~~~~idi~~~ 35 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEH------QIPFEERNLFKQ 35 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC------CCceEEEecCCC
Confidence 4578899999999998777763 255556666444
No 271
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=82.85 E-value=2.3 Score=35.60 Aligned_cols=83 Identities=20% Similarity=0.234 Sum_probs=49.1
Q ss_pred CCCcEEEEEECCCChhhhhhhhhHHHHHH----HhcCc---eEEEEEeCC-CCh--HHHHHcCCCcccE-EEEEeCCeEE
Q 030222 93 SGSPVLVEFWAPWCGPCRMIHPIIDELSK----QYVGK---LKCYKVNTD-ESP--SIATRYGIRSIPT-VMIFKNGEKK 161 (181)
Q Consensus 93 ~~~~vlV~F~a~wC~~C~~~~p~l~~la~----~~~~~---v~~~~vd~d-~~~--~l~~~y~V~~~Pt-l~i~~~G~~~ 161 (181)
+..+.++- ||.|....-.+..++. .|.+. +++...-|- +.+ .--..+||.+-+. .++|++|+++
T Consensus 263 ~~g~~Iis-----CPgCgR~~~D~~~la~~vee~~~~~~~PlkIAVmGC~VNgpGEa~~aDIGIaG~~~~~~vf~~Gk~v 337 (360)
T PRK00366 263 SRGPEVIS-----CPTCGRTEFDVIQELAEVEQRLEHIKMPLKVAVMGCVVNGPGEAKEADIGIAGGNPKGPVFVDGEKI 337 (360)
T ss_pred cCCCeEEE-----CCCCCCCcccHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCCchhhCcEeEecCCCceEEEECCEEe
Confidence 44555554 7777776665555444 44331 444444442 111 2235678877664 8889999999
Q ss_pred EEEeCCCCHHHHHHHHHhh
Q 030222 162 DTVIGAVPKSTLTTSIEKF 180 (181)
Q Consensus 162 ~~~~G~~~~~~l~~~i~~~ 180 (181)
..+.+..-.++|.+.|+++
T Consensus 338 ~kv~~~~~~~~l~~~i~~~ 356 (360)
T PRK00366 338 KTLPEENIVEELEAEIEAY 356 (360)
T ss_pred eeeChHhHHHHHHHHHHHH
Confidence 9876655555666666543
No 272
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=82.72 E-value=1.8 Score=26.65 Aligned_cols=57 Identities=14% Similarity=0.255 Sum_probs=36.1
Q ss_pred EEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCCC----ChHHHHHcCCCcccEEEEEeCCeEE
Q 030222 99 VEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDE----SPSIATRYGIRSIPTVMIFKNGEKK 161 (181)
Q Consensus 99 V~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~----~~~l~~~y~V~~~Ptl~i~~~G~~~ 161 (181)
..|+.++|+.|+...-.+.+..-+ .....++... .+++.+...-..+|++.. +|+.+
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~~~~----~~~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~--~~~~i 62 (73)
T cd03056 2 KLYGFPLSGNCYKVRLLLALLGIP----YEWVEVDILKGETRTPEFLALNPNGEVPVLEL--DGRVL 62 (73)
T ss_pred EEEeCCCCccHHHHHHHHHHcCCC----cEEEEecCCCcccCCHHHHHhCCCCCCCEEEE--CCEEE
Confidence 457889999999887766664322 4445555422 244555556678999874 46544
No 273
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=80.23 E-value=7.8 Score=24.06 Aligned_cols=69 Identities=17% Similarity=0.131 Sum_probs=41.9
Q ss_pred EEEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCC----CChHHHHHcCCCcccEEEEEeCCeEEEEEeCCCCHHHH
Q 030222 98 LVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTD----ESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTL 173 (181)
Q Consensus 98 lV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d----~~~~l~~~y~V~~~Ptl~i~~~G~~~~~~~G~~~~~~l 173 (181)
+..|+.+.|+.|+...-.+.+..-. +....++.. ..+++.+......+|++.. +|..+. ....+
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~i~----~~~~~~~~~~~~~~~~~~~~~~P~~~vP~l~~--~g~~l~------es~aI 69 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKGVD----YELVPVDLTKGEHKSPEHLARNPFGQIPALED--GDLKLF------ESRAI 69 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcCCC----cEEEEeCccccccCCHHHHhhCCCCCCCEEEE--CCEEEE------cHHHH
Confidence 4566677799999988776665332 344444442 2345666677889998753 565432 34445
Q ss_pred HHHHH
Q 030222 174 TTSIE 178 (181)
Q Consensus 174 ~~~i~ 178 (181)
.++|.
T Consensus 70 ~~yL~ 74 (76)
T cd03053 70 TRYLA 74 (76)
T ss_pred HHHHh
Confidence 55554
No 274
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=80.02 E-value=4.8 Score=29.88 Aligned_cols=44 Identities=14% Similarity=0.252 Sum_probs=30.9
Q ss_pred CCChHHHHHcCCCccc-E-EEEEeCCeEEEEEeCCCCHHHHHHHHH
Q 030222 135 DESPSIATRYGIRSIP-T-VMIFKNGEKKDTVIGAVPKSTLTTSIE 178 (181)
Q Consensus 135 d~~~~l~~~y~V~~~P-t-l~i~~~G~~~~~~~G~~~~~~l~~~i~ 178 (181)
|.+..+...|+...-- + +++.++|++.+...|.++.+++.++|+
T Consensus 110 D~~G~~~~aW~L~~~~SaiiVlDK~G~V~F~k~G~Ls~~Ev~qVi~ 155 (160)
T PF09695_consen 110 DSNGVVRKAWQLQEESSAIIVLDKQGKVQFVKEGALSPAEVQQVIA 155 (160)
T ss_pred cCCCceeccccCCCCCceEEEEcCCccEEEEECCCCCHHHHHHHHH
Confidence 3344455555555332 3 444489999999999999999998875
No 275
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=79.25 E-value=16 Score=24.40 Aligned_cols=64 Identities=16% Similarity=0.191 Sum_probs=40.8
Q ss_pred CCChhhhhhhhhHHHHHHHhcCceEEEEEeCCCCh-HHHHHcCCCcccEEEEEeCCeEEEEEeCCCCHHHHHHHHHh
Q 030222 104 PWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESP-SIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEK 179 (181)
Q Consensus 104 ~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~-~l~~~y~V~~~Ptl~i~~~G~~~~~~~G~~~~~~l~~~i~~ 179 (181)
.+|++|++..-.+.+. +-...+..+|..+.+ ++.+..-...+|++. .+|..+. +...+.+.|++
T Consensus 20 g~cpf~~rvrl~L~eK----gi~ye~~~vd~~~~p~~~~~~nP~g~vPvL~--~~~~~i~------eS~~I~eYLde 84 (91)
T cd03061 20 GNCPFCQRLFMVLWLK----GVVFNVTTVDMKRKPEDLKDLAPGTQPPFLL--YNGEVKT------DNNKIEEFLEE 84 (91)
T ss_pred CCChhHHHHHHHHHHC----CCceEEEEeCCCCCCHHHHHhCCCCCCCEEE--ECCEEec------CHHHHHHHHHH
Confidence 5799999988766654 223556777766544 455555667899665 3565543 55566666665
No 276
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=78.44 E-value=3.6 Score=29.50 Aligned_cols=32 Identities=13% Similarity=0.277 Sum_probs=22.3
Q ss_pred EEEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCC
Q 030222 98 LVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTD 135 (181)
Q Consensus 98 lV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d 135 (181)
+..|+.++|+.|+.....|++- ++.+-.+|..
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~------~i~~~~~d~~ 33 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAH------QLSYKEQNLG 33 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHc------CCCeEEEECC
Confidence 4578889999999988666553 2455555554
No 277
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=77.95 E-value=17 Score=25.77 Aligned_cols=50 Identities=14% Similarity=0.261 Sum_probs=32.9
Q ss_pred ceEEEEEeCCCChH----------HHHHcCCCcccEEEEEeCCeEEEEEeCCCCHHHHHHHHH
Q 030222 126 KLKCYKVNTDESPS----------IATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIE 178 (181)
Q Consensus 126 ~v~~~~vd~d~~~~----------l~~~y~V~~~Ptl~i~~~G~~~~~~~G~~~~~~l~~~i~ 178 (181)
.+.+..-|...++. +.++-|...+|-+++ +|+++. ...+.+.++|.+|+.
T Consensus 40 gv~v~RyNL~~~P~aF~~n~~V~~~L~~~G~e~LPitlV--dGeiv~-~G~YPt~eEl~~~~~ 99 (123)
T PF06953_consen 40 GVEVERYNLAQNPQAFVENPEVNQLLQTEGAEALPITLV--DGEIVK-TGRYPTNEELAEWLG 99 (123)
T ss_dssp T-EEEEEETTT-TTHHHHSHHHHHHHHHH-GGG-SEEEE--TTEEEE-ESS---HHHHHHHHT
T ss_pred CceEEEEccccCHHHHHhCHHHHHHHHHcCcccCCEEEE--CCEEEE-ecCCCCHHHHHHHhC
Confidence 48888888887753 556679999998777 899876 344678899998874
No 278
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=77.14 E-value=14 Score=28.56 Aligned_cols=77 Identities=22% Similarity=0.476 Sum_probs=46.4
Q ss_pred EEEEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCC------------------CChHHHHHcCCC--cccEEEEEe
Q 030222 97 VLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTD------------------ESPSIATRYGIR--SIPTVMIFK 156 (181)
Q Consensus 97 vlV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d------------------~~~~l~~~y~V~--~~Ptl~i~~ 156 (181)
||=+|.+..|..|-.....|.+++.+- ++..+...+| .+...+++++.+ .+|-+++
T Consensus 1 vVELFTSQGCsSCPpAD~~L~~l~~~~--~Vi~LafHVDYWDylGWkD~fa~~~~t~RQr~Y~~~~~~~~vYTPQ~vV-- 76 (202)
T PF06764_consen 1 VVELFTSQGCSSCPPADRLLSELAARP--DVIALAFHVDYWDYLGWKDPFASPEFTQRQRAYARRFGLRSVYTPQVVV-- 76 (202)
T ss_dssp EEEEEE-TT-TT-HHHHHHHHHHHHHT--SSEEEEEE-STT-SSSS--TT--HHHHHHHHHHHHHTT-S---SSEEEE--
T ss_pred CeeEecCCCCCCCcHHHHHHHHhhcCC--CEEEEEecCCcccCCCCCCccCChhHHHHHHHHHHHhCCCCCcCCeEEE--
Confidence 456788999999999999999999983 4555444432 112355566655 4677776
Q ss_pred CCeEEEEEeCCCCHHHHHHHHHhh
Q 030222 157 NGEKKDTVIGAVPKSTLTTSIEKF 180 (181)
Q Consensus 157 ~G~~~~~~~G~~~~~~l~~~i~~~ 180 (181)
||..-. .| .+.+.+...|++.
T Consensus 77 nG~~~~--~g-~~~~~~~~ai~~~ 97 (202)
T PF06764_consen 77 NGREHR--VG-SDRAAVEAAIQAA 97 (202)
T ss_dssp TTTEEE--ET-T-HHHHHHHHHHH
T ss_pred CCeeee--ec-cCHHHHHHHHHHh
Confidence 777643 34 3666677776653
No 279
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=76.77 E-value=3.3 Score=30.90 Aligned_cols=22 Identities=23% Similarity=0.490 Sum_probs=18.3
Q ss_pred hHHHHHcCCCcccEEEEEeCCe
Q 030222 138 PSIATRYGIRSIPTVMIFKNGE 159 (181)
Q Consensus 138 ~~l~~~y~V~~~Ptl~i~~~G~ 159 (181)
...+.++||.++||+++..+++
T Consensus 159 ~~~a~~~gv~g~Ptfvv~~~~~ 180 (193)
T cd03025 159 QKLARELGINGFPTLVLEDDNG 180 (193)
T ss_pred HHHHHHcCCCccCEEEEEeCCe
Confidence 3567789999999999997766
No 280
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=75.32 E-value=15 Score=26.57 Aligned_cols=68 Identities=13% Similarity=0.242 Sum_probs=50.2
Q ss_pred CCCcEEEEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcc-c-EEEEEeCCeEEE
Q 030222 93 SGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSI-P-TVMIFKNGEKKD 162 (181)
Q Consensus 93 ~~~~vlV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~y~V~~~-P-tl~i~~~G~~~~ 162 (181)
.+++-.|.+|.--|+.|-.....+.+.- -++.+.|..+.......+.+.+++..- + ++++.++|+...
T Consensus 5 ~~~p~~vvlyDG~C~lC~~~vrfLi~~D--~~~~i~f~~~q~e~g~~~l~~~~l~~~~~~s~~~~~~g~~~~ 74 (137)
T COG3011 5 MKKPDLVVLYDGVCPLCDGWVRFLIRRD--QGGRIRFAALQSEPGQALLEAAGLDPEDVDSVLLVEAGQLLV 74 (137)
T ss_pred CCCCCEEEEECCcchhHHHHHHHHHHhc--cCCcEEEEeccCchhhhHHhhcCCChhhhheeeEecCCceEe
Confidence 3567788899999999999777665542 234588888888888888888887644 4 466667777653
No 281
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=74.70 E-value=10 Score=26.25 Aligned_cols=46 Identities=20% Similarity=0.256 Sum_probs=37.8
Q ss_pred HhhCCCcEEEEEECCCChhhhhhhhhHHHHHHHhcC-ceEEEEEeCCC
Q 030222 90 VLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVG-KLKCYKVNTDE 136 (181)
Q Consensus 90 ~~~~~~~vlV~F~a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~d~ 136 (181)
..-+|+++||.=.|+-|+.-. ....|+++.++|.+ .+.++..-+++
T Consensus 17 ~~y~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~gl~ILaFPcnq 63 (108)
T PF00255_consen 17 SKYKGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDKGLEILAFPCNQ 63 (108)
T ss_dssp GGGTTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGGTEEEEEEEBST
T ss_pred HHcCCCEEEEEecccccCCcc-ccHHHHHHHHHHhcCCeEEEeeehHH
Confidence 445689999999999999999 78899999999984 47777777754
No 282
>COG5429 Uncharacterized secreted protein [Function unknown]
Probab=72.94 E-value=5.2 Score=31.69 Aligned_cols=81 Identities=20% Similarity=0.274 Sum_probs=52.6
Q ss_pred CcEEEEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeC----------------CCChHHHHHcCCCcccEEEEEeCC
Q 030222 95 SPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNT----------------DESPSIATRYGIRSIPTVMIFKNG 158 (181)
Q Consensus 95 ~~vlV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~----------------d~~~~l~~~y~V~~~Ptl~i~~~G 158 (181)
..|+-+|.+..|..|-.....+.+++++-.=-..-+.||. +.+....+.|+-++++|=-.+-||
T Consensus 42 ~~VVELfTSQGCsSCPPAd~~l~k~a~~~~vlALsyhVdYWdYlGWkDtlar~enTeRQ~aY~~a~g~~~vyTPQavvnG 121 (261)
T COG5429 42 LGVVELFTSQGCSSCPPADANLAKLADDPGVLALSYHVDYWDYLGWKDTLARKENTERQRAYARAFGARGVYTPQAVVNG 121 (261)
T ss_pred ceEEEEeecCCcCCCChHHHHHHHhccCCCEEEEEEeecccccCCccccccchhhhHHHHHHHHhhccCCCCCchheeec
Confidence 4577778899999999999888888776431112233433 334567788899998884445577
Q ss_pred eEEEEEeCCCCHHHHHHHHH
Q 030222 159 EKKDTVIGAVPKSTLTTSIE 178 (181)
Q Consensus 159 ~~~~~~~G~~~~~~l~~~i~ 178 (181)
..... |. +..++.+.|+
T Consensus 122 r~~~~--Ga-d~~~i~~~i~ 138 (261)
T COG5429 122 RVHAN--GA-DPGAIEDAIA 138 (261)
T ss_pred hhhhc--CC-CHHHHHHHHH
Confidence 66543 32 4455666554
No 283
>PF00352 TBP: Transcription factor TFIID (or TATA-binding protein, TBP); InterPro: IPR000814 The TATA-box binding protein (TBP) is required for the initiation of transcription by RNA polymerases I, II and III, from promoters with or without a TATA box [, ]. TBP associates with a host of factors, including the general transcription factors TFIIA, -B, -D, -E, and -H, to form huge multi-subunit pre-initiation complexes on the core promoter. Through its association with different transcription factors, TBP can initiate transcription from different RNA polymerases. There are several related TBPs, including TBP-like (TBPL) proteins []. The C-terminal core of TBP (~180 residues) is highly conserved and contains two 77-amino acid repeats that produce a saddle-shaped structure that straddles the DNA; this region binds to the TATA box and interacts with transcription factors and regulatory proteins []. By contrast, the N-terminal region varies in both length and sequence.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0006367 transcription initiation from RNA polymerase II promoter; PDB: 1D3U_A 1PCZ_B 1AIS_A 1NGM_A 1TBP_A 1TBA_B 1YTB_A 1RM1_A 1YTF_A 1NH2_A ....
Probab=69.60 E-value=6.5 Score=25.79 Aligned_cols=59 Identities=24% Similarity=0.402 Sum_probs=35.6
Q ss_pred hHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEeCCeEEEEEeCCCCHHHHHHHHHhh
Q 030222 115 IIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKF 180 (181)
Q Consensus 115 ~l~~la~~~~~~v~~~~vd~d~~~~l~~~y~V~~~Ptl~i~~~G~~~~~~~G~~~~~~l~~~i~~~ 180 (181)
.|.+++..+.. ..-|-+..+.+.-+.. .--.|+.+|.+|+++ +.|..+.+++.+.++++
T Consensus 20 dL~~la~~~~~----~~YePe~fpgl~~r~~-~p~~t~~IF~sGki~--itGaks~~~~~~a~~~i 78 (86)
T PF00352_consen 20 DLEELAEELEN----VEYEPERFPGLIYRLR-NPKATVLIFSSGKIV--ITGAKSEEEAKKAIEKI 78 (86)
T ss_dssp -HHHHHHHSTT----EEEETTTESSEEEEET-TTTEEEEEETTSEEE--EEEESSHHHHHHHHHHH
T ss_pred CHHHHHhhccC----cEEeeccCCeEEEeec-CCcEEEEEEcCCEEE--EEecCCHHHHHHHHHHH
Confidence 56677776632 2223333333221111 123579999999987 66888998888888775
No 284
>KOG1364 consensus Predicted ubiquitin regulatory protein, contains UAS and UBX domains [Posttranslational modification, protein turnover, chaperones]
Probab=69.58 E-value=6.1 Score=32.97 Aligned_cols=55 Identities=20% Similarity=0.366 Sum_probs=43.7
Q ss_pred eEEEEEeCCCChHHHHHcCCCcccEEEEE--eCCeEEEEEeCCCCHHHHHHHHHhhC
Q 030222 127 LKCYKVNTDESPSIATRYGIRSIPTVMIF--KNGEKKDTVIGAVPKSTLTTSIEKFL 181 (181)
Q Consensus 127 v~~~~vd~d~~~~l~~~y~V~~~Ptl~i~--~~G~~~~~~~G~~~~~~l~~~i~~~L 181 (181)
...+..|..+...+..-|.+..+|.+.++ .-|+.+.++.|..+.+++..-+++++
T Consensus 133 wllV~~Dtseg~~~~~Fy~~~~~P~i~iiDp~Tge~v~~ws~vi~~~~fl~~l~~Fi 189 (356)
T KOG1364|consen 133 WLLVLDDTSEGQPFSAFYHISSLPHIAIIDPITGERVKRWSGVIEPEQFLSDLNEFI 189 (356)
T ss_pred EEEEeeccCCCCchhhheeccCCceEEEECCchhhhhhhhccccCHHHHHHHHHHHH
Confidence 33345566667778899999999988777 48999999999988888888777764
No 285
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=67.99 E-value=37 Score=26.49 Aligned_cols=65 Identities=14% Similarity=0.159 Sum_probs=40.1
Q ss_pred CChhhhhhhhhHHHHHHHhcCceEEEEEeCCCChHHHHHc-CCCcccEEEEEeCCeEEEEEeCCCCHHHHHHHHHhhC
Q 030222 105 WCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRY-GIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 181 (181)
Q Consensus 105 wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~y-~V~~~Ptl~i~~~G~~~~~~~G~~~~~~l~~~i~~~L 181 (181)
.|+.|+++.-.+. .+.. ..++-.||....++-.... .-...|-+.+ +|+.+ .+.+.++++|++.|
T Consensus 20 dcpf~qr~~m~L~---~k~~-~f~vttVd~~~kp~~f~~~sp~~~~P~l~~--d~~~~------tDs~~Ie~~Lee~l 85 (221)
T KOG1422|consen 20 DCPFCQRLFMTLE---LKGV-PFKVTTVDLSRKPEWFLDISPGGKPPVLKF--DEKWV------TDSDKIEEFLEEKL 85 (221)
T ss_pred CChhHHHHHHHHH---HcCC-CceEEEeecCCCcHHHHhhCCCCCCCeEEe--CCcee------ccHHHHHHHHHHhc
Confidence 3777777665554 3333 5888999998877766544 4455555554 44332 35667777777643
No 286
>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like.
Probab=66.69 E-value=27 Score=27.21 Aligned_cols=80 Identities=15% Similarity=0.283 Sum_probs=49.5
Q ss_pred hhHHHhhCCCcEEEEEE-----CCCChhhhhhhhhHHHHHHHhcCc-eEEEEEeCCCCh---------------------
Q 030222 86 WQSLVLDSGSPVLVEFW-----APWCGPCRMIHPIIDELSKQYVGK-LKCYKVNTDESP--------------------- 138 (181)
Q Consensus 86 ~~~~~~~~~~~vlV~F~-----a~wC~~C~~~~p~l~~la~~~~~~-v~~~~vd~d~~~--------------------- 138 (181)
+.++.....+.++-.|. ...|+.|-.+.-.++.....+... +.|+.|.-....
T Consensus 60 L~dLF~Gr~qLivyhfM~~p~~~~~C~gCs~~~D~~~g~l~hL~~rd~tfa~vSraP~~~i~afk~rmGW~~pw~Ss~gs 139 (211)
T PF05988_consen 60 LADLFEGRRQLIVYHFMFGPDWDEGCPGCSFWADHIDGALRHLHARDTTFAVVSRAPLEKIEAFKRRMGWTFPWYSSYGS 139 (211)
T ss_pred HHHHcCCCceEEEEeeccCCCCCCCCCchhhhHhhhhhhHHHHHhCCceEEEEeCCCHHHHHHHHHhcCCCceEEEcCCC
Confidence 33444434556666665 678999999999996655555544 788777664332
Q ss_pred HHHHHcCC-----CcccEEEEE-eCCeEE-EEEe
Q 030222 139 SIATRYGI-----RSIPTVMIF-KNGEKK-DTVI 165 (181)
Q Consensus 139 ~l~~~y~V-----~~~Ptl~i~-~~G~~~-~~~~ 165 (181)
++...|++ ...|.+-+| ++|..| ..|.
T Consensus 140 ~Fn~D~~~~~~~~~~~~g~svF~Rdg~~VfhTys 173 (211)
T PF05988_consen 140 DFNYDFGVSFDEGGEMPGLSVFLRDGGRVFHTYS 173 (211)
T ss_pred cccccccceeccCCCceeEEEEEEcCCEEEEEee
Confidence 23345566 577876656 555444 4444
No 287
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=66.42 E-value=22 Score=21.78 Aligned_cols=60 Identities=17% Similarity=0.221 Sum_probs=35.5
Q ss_pred EEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCC-CChHHHHHcCCCcccEEEEEeCCeEE
Q 030222 99 VEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTD-ESPSIATRYGIRSIPTVMIFKNGEKK 161 (181)
Q Consensus 99 V~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d-~~~~l~~~y~V~~~Ptl~i~~~G~~~ 161 (181)
..|+.+.|++|.+..-.+.+.. .+-.+....+|.. ..+++.+......+|++.. .+|..+
T Consensus 2 ~Ly~~~~s~~~~~~~~~l~~~~--~~i~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~-~~g~~l 62 (73)
T cd03049 2 KLLYSPTSPYVRKVRVAAHETG--LGDDVELVLVNPWSDDESLLAVNPLGKIPALVL-DDGEAL 62 (73)
T ss_pred EEecCCCCcHHHHHHHHHHHhC--CCCCcEEEEcCcccCChHHHHhCCCCCCCEEEE-CCCCEE
Confidence 3567889999998776555421 1112444555432 2345666666788998764 355543
No 288
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=66.42 E-value=7.2 Score=29.86 Aligned_cols=39 Identities=15% Similarity=0.307 Sum_probs=24.6
Q ss_pred HHHHHcCCCcccEEEEEeCCeEEEEEeCCCCHHHHHHHH
Q 030222 139 SIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSI 177 (181)
Q Consensus 139 ~l~~~y~V~~~Ptl~i~~~G~~~~~~~G~~~~~~l~~~i 177 (181)
+-+.+.||.++|++++..++..-..+-|.--.+.+.++|
T Consensus 170 ~~A~~~Gv~GVP~fvv~~~~~~~e~fwG~Drl~~~~~~l 208 (209)
T cd03021 170 DEALKYGAFGLPWIVVTNDKGKTEMFFGSDRFEQVADFL 208 (209)
T ss_pred HHHHHcCCCCCCEEEEEcCCCCccceecCCcHHHHHHHh
Confidence 345677999999999975322122455665556555554
No 289
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=66.39 E-value=28 Score=26.43 Aligned_cols=62 Identities=15% Similarity=0.148 Sum_probs=40.3
Q ss_pred CCcEEEEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCCCC-hHHHHHcCCCcccEEEEEeCCeEE
Q 030222 94 GSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDES-PSIATRYGIRSIPTVMIFKNGEKK 161 (181)
Q Consensus 94 ~~~vlV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~-~~l~~~y~V~~~Ptl~i~~~G~~~ 161 (181)
+...+..|+.++|+.|+...-.+++..- .+....+|.... +++.+..--..+|++. .+|..+
T Consensus 7 ~~~~~~Ly~~~~s~~~~rv~~~L~e~gl----~~e~~~v~~~~~~~~~~~~nP~g~VPvL~--~~g~~l 69 (211)
T PRK09481 7 KRSVMTLFSGPTDIYSHQVRIVLAEKGV----SVEIEQVEKDNLPQDLIDLNPYQSVPTLV--DRELTL 69 (211)
T ss_pred CCCeeEEeCCCCChhHHHHHHHHHHCCC----CCEEEeCCcccCCHHHHHhCCCCCCCEEE--ECCEEe
Confidence 3445667777899999999876666422 345556665433 4566655677899996 356544
No 290
>PRK10387 glutaredoxin 2; Provisional
Probab=65.08 E-value=46 Score=24.90 Aligned_cols=57 Identities=12% Similarity=0.172 Sum_probs=32.7
Q ss_pred EEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEeCCeEE
Q 030222 100 EFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKK 161 (181)
Q Consensus 100 ~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~y~V~~~Ptl~i~~~G~~~ 161 (181)
.++.+.|++|.+..-.+++..-. +....++..++.......+...+|+++.. +|..+
T Consensus 3 Ly~~~~sp~~~kv~~~L~~~gi~----y~~~~~~~~~~~~~~~~~p~~~VPvL~~~-~g~~l 59 (210)
T PRK10387 3 LYIYDHCPFCVKARMIFGLKNIP----VELIVLANDDEATPIRMIGQKQVPILQKD-DGSYM 59 (210)
T ss_pred EEeCCCCchHHHHHHHHHHcCCC----eEEEEcCCCchhhHHHhcCCcccceEEec-CCeEe
Confidence 45677899999988766654322 33344444333222233345679998643 56543
No 291
>TIGR02743 TraW type-F conjugative transfer system protein TraW. This protein is an essential component of the F-type conjugative transfer sytem for plasmid DNA transfer and has been shown to be localized to the periplasm.
Probab=62.83 E-value=16 Score=28.20 Aligned_cols=41 Identities=20% Similarity=0.506 Sum_probs=29.1
Q ss_pred HHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEeCCeEEE
Q 030222 116 IDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKD 162 (181)
Q Consensus 116 l~~la~~~~~~v~~~~vd~d~~~~l~~~y~V~~~Ptl~i~~~G~~~~ 162 (181)
+.++.++++. .+..|.++.|.++|||+.+|.++. .+|+...
T Consensus 158 ~~~l~~~l~~-----~vYfdQ~g~Lt~rF~I~~VPavV~-q~g~~l~ 198 (202)
T TIGR02743 158 VNELEKRLDS-----RIYFDQHGKLTQKFGIKHVPARVS-QEGLRLR 198 (202)
T ss_pred HHHHHHHhCC-----ceEEcCCchHhhccCceeeceEEE-ecCCEEE
Confidence 4555666542 344577788999999999999885 5666543
No 292
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=61.97 E-value=56 Score=24.82 Aligned_cols=56 Identities=13% Similarity=0.183 Sum_probs=31.8
Q ss_pred EECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEeCCeEE
Q 030222 101 FWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKK 161 (181)
Q Consensus 101 F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~y~V~~~Ptl~i~~~G~~~ 161 (181)
++...||+|++..-.+.+..-.| ....++.+++....+......+|++.. .+|..+
T Consensus 3 y~~~~sp~~~kvr~~L~~~gl~~----e~~~~~~~~~~~~~~~np~g~vP~l~~-~~g~~l 58 (209)
T TIGR02182 3 YIYDHCPFCVRARMIFGLKNIPV----EKHVLLNDDEETPIRMIGAKQVPILQK-DDGRAM 58 (209)
T ss_pred ecCCCCChHHHHHHHHHHcCCCe----EEEECCCCcchhHHHhcCCCCcceEEe-eCCeEe
Confidence 56677999998877666543222 223333333333334444578998754 366544
No 293
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=61.96 E-value=6.7 Score=32.94 Aligned_cols=83 Identities=20% Similarity=0.219 Sum_probs=46.9
Q ss_pred CCCcEEEEEECCCChhhhhhhhhHHHHHHHhcC-------ceEEEEEeCCCCh--HH-HHHcCCC-cccE-EEEEeCCeE
Q 030222 93 SGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVG-------KLKCYKVNTDESP--SI-ATRYGIR-SIPT-VMIFKNGEK 160 (181)
Q Consensus 93 ~~~~vlV~F~a~wC~~C~~~~p~l~~la~~~~~-------~v~~~~vd~d~~~--~l-~~~y~V~-~~Pt-l~i~~~G~~ 160 (181)
..++-+|- ||.|-+..=.+.+++++... .+++...-|--|. +. -..||+- +-+- ..+|++|++
T Consensus 263 ~~g~~~IS-----CPtCGRt~~Dl~~~~~~ie~~l~~l~~~lkIAVMGCiVNGPGEa~~AD~GiaGgg~g~~~lf~~g~~ 337 (359)
T PF04551_consen 263 KRGPEIIS-----CPTCGRTEFDLQELVAEIEERLKHLKKGLKIAVMGCIVNGPGEAKDADIGIAGGGKGKGILFKKGEV 337 (359)
T ss_dssp -SS-EEEE---------TT--SHHHHHHHHHHHHCCCHHCG-EEEEESSTCCCHHHCTTSSEEEE-E-TTCEEEECTTEE
T ss_pred cCCceeee-----CCCCCCccchHHHHHHHHHHHHhcCCCCceEEEEeeeecCCchhhhCceeeecCCCCeEEEEECCEE
Confidence 34555544 88888776667666655432 3666666664432 11 1346776 5554 899999999
Q ss_pred EEEE-eCCCCHHHHHHHHHhh
Q 030222 161 KDTV-IGAVPKSTLTTSIEKF 180 (181)
Q Consensus 161 ~~~~-~G~~~~~~l~~~i~~~ 180 (181)
+.+. ....-.++|.+.|++.
T Consensus 338 v~k~~~ee~~vd~L~~~I~~~ 358 (359)
T PF04551_consen 338 VKKVIPEEEIVDELIELIEEH 358 (359)
T ss_dssp EEEE-CSTCHHHHHHHHHHHH
T ss_pred EEecCCHHHHHHHHHHHHHhh
Confidence 9988 6666677788887764
No 294
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=61.01 E-value=14 Score=30.79 Aligned_cols=75 Identities=16% Similarity=0.163 Sum_probs=45.6
Q ss_pred ChhhhhhhhhHHHH----HHHhcC---ceEEEEEeC--CCChH-HHHHcCCCc--ccEEEEEeCCeEEEEEeCCCCHHHH
Q 030222 106 CGPCRMIHPIIDEL----SKQYVG---KLKCYKVNT--DESPS-IATRYGIRS--IPTVMIFKNGEKKDTVIGAVPKSTL 173 (181)
Q Consensus 106 C~~C~~~~p~l~~l----a~~~~~---~v~~~~vd~--d~~~~-l~~~y~V~~--~Ptl~i~~~G~~~~~~~G~~~~~~l 173 (181)
||.|-+..-.+.+. .+.+.. .+++..+-| +--.+ --..+||.+ -|...+|++|+++.+..+..-.++|
T Consensus 264 CP~CGR~~~dv~~~~~~~~~~~~~~~~pl~VAVMGCVVNGPGEak~AdiGia~~~~~~~~~f~~g~~~~~~~~~~~~eel 343 (361)
T COG0821 264 CPTCGRTEFDVIQTLNEVEQRLEHLKTPLKVAVMGCVVNGPGEAKHADIGIAGGGKGSGPVFVKGEIIKKLPEEDIVEEL 343 (361)
T ss_pred CCCCCceeehHHHHHHHHHHHhhccCCCceEEEEEeEecCCcchhccceeeecCCCCeeEEEECCeEEEecChhhHHHHH
Confidence 99998776555443 333332 133333332 21111 123456654 5789999999999988777777777
Q ss_pred HHHHHhh
Q 030222 174 TTSIEKF 180 (181)
Q Consensus 174 ~~~i~~~ 180 (181)
.+.|+++
T Consensus 344 ~~~i~~~ 350 (361)
T COG0821 344 EALIEAY 350 (361)
T ss_pred HHHHHHH
Confidence 7777664
No 295
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=60.15 E-value=37 Score=23.33 Aligned_cols=55 Identities=22% Similarity=0.280 Sum_probs=38.5
Q ss_pred CCCChhhhhhhhhHHHHHHHhcCceEEEEEeCCCChHHHHHcC-CCcccEE-EEEeCCeEEE
Q 030222 103 APWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYG-IRSIPTV-MIFKNGEKKD 162 (181)
Q Consensus 103 a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~y~-V~~~Ptl-~i~~~G~~~~ 162 (181)
.|-|+........|... . -+.|..+|+=.++++.+.+. ....||+ -+|-+|+.++
T Consensus 27 ~P~CGFS~~~vqiL~~~----g-~v~~~~vnVL~d~eiR~~lk~~s~WPT~PQLyi~GEfvG 83 (105)
T COG0278 27 FPQCGFSAQAVQILSAC----G-VVDFAYVDVLQDPEIRQGLKEYSNWPTFPQLYVNGEFVG 83 (105)
T ss_pred CCCCCccHHHHHHHHHc----C-CcceeEEeeccCHHHHhccHhhcCCCCCceeeECCEEec
Confidence 57888888877766654 2 27889999988999887553 2356663 3345898876
No 296
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=57.34 E-value=43 Score=20.54 Aligned_cols=69 Identities=9% Similarity=0.017 Sum_probs=39.5
Q ss_pred EEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCCCC-hHHHHHcCC-CcccEEEEEeCCeEEEEEeCCCCHHHHHHH
Q 030222 99 VEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDES-PSIATRYGI-RSIPTVMIFKNGEKKDTVIGAVPKSTLTTS 176 (181)
Q Consensus 99 V~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~-~~l~~~y~V-~~~Ptl~i~~~G~~~~~~~G~~~~~~l~~~ 176 (181)
..|+.+.|++|++..-.+.+..-. .....++.... +++.+.... ..+|++.. +|..+. ....+.++
T Consensus 2 ~Ly~~~~sp~~~~v~~~l~~~gl~----~~~~~~~~~~~~~~~~~~~p~~~~vP~l~~--~~~~l~------eS~aI~~y 69 (74)
T cd03058 2 KLLGAWASPFVLRVRIALALKGVP----YEYVEEDLGNKSELLLASNPVHKKIPVLLH--NGKPIC------ESLIIVEY 69 (74)
T ss_pred EEEECCCCchHHHHHHHHHHcCCC----CEEEEeCcccCCHHHHHhCCCCCCCCEEEE--CCEEee------hHHHHHHH
Confidence 356678899999988766665322 33444544332 333333333 68998863 554432 44556666
Q ss_pred HHh
Q 030222 177 IEK 179 (181)
Q Consensus 177 i~~ 179 (181)
|++
T Consensus 70 L~~ 72 (74)
T cd03058 70 IDE 72 (74)
T ss_pred HHh
Confidence 654
No 297
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=56.79 E-value=9.5 Score=31.83 Aligned_cols=79 Identities=15% Similarity=0.276 Sum_probs=43.1
Q ss_pred hCCCcEEEEEECCCChhhhhhhhhHHHHHHHh-------cCceEEEEEeCCCC--hH-HHHHcCCCcc-c-EEEEEeCCe
Q 030222 92 DSGSPVLVEFWAPWCGPCRMIHPIIDELSKQY-------VGKLKCYKVNTDES--PS-IATRYGIRSI-P-TVMIFKNGE 159 (181)
Q Consensus 92 ~~~~~vlV~F~a~wC~~C~~~~p~l~~la~~~-------~~~v~~~~vd~d~~--~~-l~~~y~V~~~-P-tl~i~~~G~ 159 (181)
....+-+|- ||.|-+..-.+.+++++. +..+++...-|--| .+ --..+||-+- + ..++|++|+
T Consensus 253 r~~g~~iiS-----CPtCGR~~~dl~~~~~~ve~~l~~~~~~l~VAVMGCvVNGPGEak~ADiGIaggg~g~~~lF~~G~ 327 (346)
T TIGR00612 253 RARGVEIVA-----CPSCGRTGFDVEKVVRRVQEALFHLKTPLKVAVMGCVVNGPGEAKHADIGISGGGTGSAILFKRGK 327 (346)
T ss_pred CcCCCeEEE-----CCCCCCcCCCHHHHHHHHHHHHhcCCCCCEEEEECceecCCchhhccCeeeecCCCCceEEEECCE
Confidence 345566654 777766655554444433 22245544433222 11 1235677754 4 488899999
Q ss_pred EEEEEeCCCCHHHHHHHHHh
Q 030222 160 KKDTVIGAVPKSTLTTSIEK 179 (181)
Q Consensus 160 ~~~~~~G~~~~~~l~~~i~~ 179 (181)
++.. .+.+++.+.+.+
T Consensus 328 ~~~k----v~~~~~~~~l~~ 343 (346)
T TIGR00612 328 PKAK----QPETDMADELIR 343 (346)
T ss_pred EeEe----cCHHHHHHHHHH
Confidence 9875 455555555544
No 298
>PF08806 Sep15_SelM: Sep15/SelM redox domain; InterPro: IPR014912 Sep15 and SelM are eukaryotic selenoproteins that have a thioredoxin-like domain and a surface accessible active site redox motif []. This suggests that they function as thiol-disulphide isomerases involved in disulphide bond formation in the endoplasmic reticulum []. ; PDB: 2A4H_A 2A2P_A.
Probab=56.47 E-value=21 Score=23.10 Aligned_cols=33 Identities=9% Similarity=0.273 Sum_probs=20.7
Q ss_pred cccEEEEEe-CCeEEEEEe-CCCCHHHHHHHHHhh
Q 030222 148 SIPTVMIFK-NGEKKDTVI-GAVPKSTLTTSIEKF 180 (181)
Q Consensus 148 ~~Ptl~i~~-~G~~~~~~~-G~~~~~~l~~~i~~~ 180 (181)
.-|++++++ +|+++.++. ...+.+++.++|++.
T Consensus 41 ~~P~L~l~d~~g~~~E~i~i~~w~~d~i~efL~~k 75 (78)
T PF08806_consen 41 APPELVLLDEDGEEVERINIEKWKTDEIEEFLNEK 75 (78)
T ss_dssp ---EEEEE-SSS--SEEEE-SSSSHCHHHHHHHHH
T ss_pred CCCEEEEEcCCCCEEEEEEcccCCHHHHHHHHHHh
Confidence 457888875 888776544 456899999999864
No 299
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=55.56 E-value=45 Score=20.32 Aligned_cols=58 Identities=16% Similarity=0.203 Sum_probs=32.5
Q ss_pred CCChhhhhhhhhHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEeCCeEEEEEeCCCCHHHHHHHHHh
Q 030222 104 PWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEK 179 (181)
Q Consensus 104 ~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~y~V~~~Ptl~i~~~G~~~~~~~G~~~~~~l~~~i~~ 179 (181)
+||++|++..-.+... ++.+-.++.+... .-.-..+|++.. +|+.+. ....+.++|++
T Consensus 14 s~sp~~~~v~~~L~~~------~i~~~~~~~~~~~----~~p~g~vP~l~~--~g~~l~------es~~I~~yL~~ 71 (72)
T cd03054 14 SLSPECLKVETYLRMA------GIPYEVVFSSNPW----RSPTGKLPFLEL--NGEKIA------DSEKIIEYLKK 71 (72)
T ss_pred CCCHHHHHHHHHHHhC------CCceEEEecCCcc----cCCCcccCEEEE--CCEEEc------CHHHHHHHHhh
Confidence 5999999998777663 2333333333221 123457898864 455432 33556666654
No 300
>cd07973 Spt4 Transcription elongation factor Spt4. Spt4 is a transcription elongation factor. Three transcription-elongation factors Spt4, Spt5, and Spt6, are conserved among eukaryotes and are essential for transcription via the modulation of chromatin structure. It is known that Spt4, Spt5, and Spt6 are general transcription-elongation factors, controlling transcription both positively and negatively in important regulatory and developmental roles. Spt4 functions entirely in the context of the Spt4-Spt5 heterodimer and it has been found only as a complex to Spt5 in Yeast and Human. Spt4 is a small protein that has zinc finger at the N-terminus. Spt5 is a large protein that has several interesting structural features of an acidic N-terminus, a single NGN domain, five or six KOW domains, and a set of simple C-termianl repeats. Spt4 binds to Spt5 NGN domain. Unlike Spt5, Spt4 is not essential for viability in yeast, however Spt4 is critical for normal function of the Spt4-Spt5 compl
Probab=55.36 E-value=23 Score=24.10 Aligned_cols=68 Identities=22% Similarity=0.297 Sum_probs=37.7
Q ss_pred EECCCChhhhhhhh-------hHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEeCCeEEEEEeCCCCHHHH
Q 030222 101 FWAPWCGPCRMIHP-------IIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTL 173 (181)
Q Consensus 101 F~a~wC~~C~~~~p-------~l~~la~~~~~~v~~~~vd~d~~~~l~~~y~V~~~Ptl~i~~~G~~~~~~~G~~~~~~l 173 (181)
|....|+.|..+.. ..+.....|.+ ++.+--.+...+++.++|.. +..|.-.-.+.|.++.+ +
T Consensus 18 f~~~gCpnC~~~l~~~g~~~~v~~~tT~~f~G---~i~i~dP~~SwVAk~l~i~~------~~pG~YAi~V~g~lp~~-i 87 (98)
T cd07973 18 FERDGCPNCEGYLDMKGNHERVYDCTSPNFEG---IIALMDPEKSWVARWQRIDK------FVPGIYAISVSGRLPED-I 87 (98)
T ss_pred ccCCCCCCCcchhccCCCccccccccCCCcce---EEEEECCchhHHHHHhCCCC------CCCCeEEEEecCcCCHH-H
Confidence 88899999963321 11123334443 22222234557899999973 23454445577776665 4
Q ss_pred HHHHH
Q 030222 174 TTSIE 178 (181)
Q Consensus 174 ~~~i~ 178 (181)
.+.++
T Consensus 88 ~~~l~ 92 (98)
T cd07973 88 VEELE 92 (98)
T ss_pred HHHHH
Confidence 44444
No 301
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=55.13 E-value=1.3e+02 Score=25.48 Aligned_cols=89 Identities=16% Similarity=0.184 Sum_probs=56.9
Q ss_pred CCCcEEEEEECCCChhhhhhhhhHHHHHHHhcC--ceEEEEEeCCCChHHH----HHcCCC-cccEEEEEe--CCeEEE-
Q 030222 93 SGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVG--KLKCYKVNTDESPSIA----TRYGIR-SIPTVMIFK--NGEKKD- 162 (181)
Q Consensus 93 ~~~~vlV~F~a~wC~~C~~~~p~l~~la~~~~~--~v~~~~vd~d~~~~l~----~~y~V~-~~Ptl~i~~--~G~~~~- 162 (181)
-++..+|-|-..--+.-.++...+.++|+...+ .+.++.||-|+-|-+. +.|+|. .-|.+-+.. +.+-+.
T Consensus 267 ~~g~hIvaFaee~dpdG~efleilk~va~~nt~np~LsivwIDPD~fPllv~yWE~tF~Idl~~PqIGvVnvtdadsvW~ 346 (383)
T PF01216_consen 267 IDGIHIVAFAEEEDPDGFEFLEILKQVARDNTDNPDLSIVWIDPDDFPLLVPYWEKTFGIDLSRPQIGVVNVTDADSVWM 346 (383)
T ss_dssp SSSEEEEEE--TTSHHHHHHHHHHHHHHHHCTT-TT--EEEE-GGG-HHHHHHHHHHHTT-TTS-EEEEEETTTSEEEEC
T ss_pred CCCceEEEEecCCCCchHHHHHHHHHHHHhcCcCCceeEEEECCCCCchhHHHHHhhcCccccCCceeEEeccccccchh
Confidence 356778888888889999999999999998865 4899999999988654 456764 348877764 333332
Q ss_pred EEe---CCCCHHHHHHHHHhhC
Q 030222 163 TVI---GAVPKSTLTTSIEKFL 181 (181)
Q Consensus 163 ~~~---G~~~~~~l~~~i~~~L 181 (181)
... ...+.+.|..||++.|
T Consensus 347 dm~d~~d~pt~~~LedWieDVl 368 (383)
T PF01216_consen 347 DMDDDDDLPTAEELEDWIEDVL 368 (383)
T ss_dssp -STTTSS---HHHHHHHHHHHH
T ss_pred ccCCcccCCcHHHHHHHHHHHh
Confidence 111 2346889999999764
No 302
>COG2101 SPT15 TATA-box binding protein (TBP), component of TFIID and TFIIIB [Transcription]
Probab=54.11 E-value=23 Score=26.82 Aligned_cols=28 Identities=21% Similarity=0.477 Sum_probs=23.9
Q ss_pred EEEEEeCCeEEEEEeCCCCHHHHHHHHHhh
Q 030222 151 TVMIFKNGEKKDTVIGAVPKSTLTTSIEKF 180 (181)
Q Consensus 151 tl~i~~~G~~~~~~~G~~~~~~l~~~i~~~ 180 (181)
++++|+.||.+ .+|..+.++++..++++
T Consensus 55 a~LIF~SGK~V--cTGaKs~ed~~~av~~~ 82 (185)
T COG2101 55 AALIFRSGKVV--CTGAKSVEDVHRAVKKL 82 (185)
T ss_pred eEEEEecCcEE--EeccCcHHHHHHHHHHH
Confidence 57889999986 68999999999888775
No 303
>cd04518 TBP_archaea archaeal TATA box binding protein (TBP): TBPs are transcription factors present in archaea and eukaryotes, that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=52.47 E-value=24 Score=26.55 Aligned_cols=28 Identities=21% Similarity=0.517 Sum_probs=23.6
Q ss_pred EEEEEeCCeEEEEEeCCCCHHHHHHHHHhh
Q 030222 151 TVMIFKNGEKKDTVIGAVPKSTLTTSIEKF 180 (181)
Q Consensus 151 tl~i~~~G~~~~~~~G~~~~~~l~~~i~~~ 180 (181)
|+++|..|+++ .+|..+.+++...++++
T Consensus 140 ~~lIF~SGKvv--itGaks~~~~~~a~~~i 167 (174)
T cd04518 140 VLLLFSSGKMV--ITGAKSEEDAKRAVEKL 167 (174)
T ss_pred EEEEeCCCEEE--EEecCCHHHHHHHHHHH
Confidence 68888999986 67999999999888765
No 304
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=52.29 E-value=16 Score=25.32 Aligned_cols=22 Identities=9% Similarity=0.291 Sum_probs=17.6
Q ss_pred EEEEECCCChhhhhhhhhHHHH
Q 030222 98 LVEFWAPWCGPCRMIHPIIDEL 119 (181)
Q Consensus 98 lV~F~a~wC~~C~~~~p~l~~l 119 (181)
+..|+.+.|..|+.....|++-
T Consensus 2 i~iy~~p~C~~crkA~~~L~~~ 23 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEAA 23 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHc
Confidence 4578899999999988766653
No 305
>PRK00394 transcription factor; Reviewed
Probab=52.21 E-value=24 Score=26.64 Aligned_cols=28 Identities=25% Similarity=0.503 Sum_probs=23.6
Q ss_pred EEEEEeCCeEEEEEeCCCCHHHHHHHHHhh
Q 030222 151 TVMIFKNGEKKDTVIGAVPKSTLTTSIEKF 180 (181)
Q Consensus 151 tl~i~~~G~~~~~~~G~~~~~~l~~~i~~~ 180 (181)
|+++|..|+++ .+|..+.+++.+.++++
T Consensus 141 ~~lIF~SGKvv--itGaks~~~~~~a~~~i 168 (179)
T PRK00394 141 VVLLFGSGKLV--ITGAKSEEDAEKAVEKI 168 (179)
T ss_pred EEEEEcCCEEE--EEecCCHHHHHHHHHHH
Confidence 68888999986 67999999998888765
No 306
>cd00652 TBP_TLF TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA. New members of the TBP family, called TBP-like proteins (TBLP, TLF, TLP) or TBP-related factors (TRF1, TRF2,TRP), are similar to the core domain of TBPs, with identical or chemically similar amino acids at many
Probab=50.57 E-value=26 Score=26.29 Aligned_cols=28 Identities=25% Similarity=0.533 Sum_probs=23.4
Q ss_pred EEEEEeCCeEEEEEeCCCCHHHHHHHHHhh
Q 030222 151 TVMIFKNGEKKDTVIGAVPKSTLTTSIEKF 180 (181)
Q Consensus 151 tl~i~~~G~~~~~~~G~~~~~~l~~~i~~~ 180 (181)
|+++|..|+++ ++|..+.+++.+.++++
T Consensus 141 t~lIF~sGkvv--itGaks~~~~~~a~~~i 168 (174)
T cd00652 141 VLLIFVSGKIV--ITGAKSREDIYEAVEKI 168 (174)
T ss_pred EEEEEcCCEEE--EEecCCHHHHHHHHHHH
Confidence 57888899986 67899999999888765
No 307
>PLN00062 TATA-box-binding protein; Provisional
Probab=50.53 E-value=26 Score=26.51 Aligned_cols=28 Identities=25% Similarity=0.483 Sum_probs=23.0
Q ss_pred EEEEEeCCeEEEEEeCCCCHHHHHHHHHhh
Q 030222 151 TVMIFKNGEKKDTVIGAVPKSTLTTSIEKF 180 (181)
Q Consensus 151 tl~i~~~G~~~~~~~G~~~~~~l~~~i~~~ 180 (181)
++++|..|+++ ++|..+.+++.+.++.+
T Consensus 140 ~~liF~sGkvv--itGaks~~~~~~ai~~i 167 (179)
T PLN00062 140 VLLIFVSGKIV--ITGAKVREEIYTAFENI 167 (179)
T ss_pred EEEEeCCCEEE--EEecCCHHHHHHHHHHH
Confidence 57788888886 67889999999988765
No 308
>PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex. A yeast nuclear gene (ATP10) encodes a product that is essential for the assembly of a functional mitochondrial ATPase complex. Mutations in ATP10 induce a loss of rutamycin sensitivity in the mitochondrial ATPase, but do not affect the respiratory enzymes. ATP10 has an Mr of 30,293 and its primary structure is not related to any known subunit of the yeast or mammalian mitochondrial ATPase complexes. ATP10 is associated with the mitochondrial membrane. It is suggested that the ATP10 product is not a subunit of the ATPase complex but rather a protein required for the assembly of the F0 sector of the complex [].; GO: 0033615 mitochondrial proton-transporting ATP synthase complex assembly, 0005743 mitochondrial inner membrane
Probab=49.43 E-value=1.3e+02 Score=24.00 Aligned_cols=41 Identities=20% Similarity=0.212 Sum_probs=30.0
Q ss_pred hHHHHHcCCCcccE--EEEE-eCCeEEEEEeCCCCHHHHHHHHH
Q 030222 138 PSIATRYGIRSIPT--VMIF-KNGEKKDTVIGAVPKSTLTTSIE 178 (181)
Q Consensus 138 ~~l~~~y~V~~~Pt--l~i~-~~G~~~~~~~G~~~~~~l~~~i~ 178 (181)
.++.+.+|+...=+ ++++ .+|++...-.|..+.+++....+
T Consensus 204 ~~iRe~Lgi~N~~~GYvyLVD~~grIRWagsG~At~~E~~~L~k 247 (252)
T PF05176_consen 204 DDIREALGINNSYVGYVYLVDPNGRIRWAGSGPATPEELESLWK 247 (252)
T ss_pred HHHHHHhCCCCCCcCeEEEECCCCeEEeCccCCCCHHHHHHHHH
Confidence 46778888876554 4444 69999999999999888876543
No 309
>cd04516 TBP_eukaryotes eukaryotic TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=48.31 E-value=30 Score=26.05 Aligned_cols=28 Identities=21% Similarity=0.464 Sum_probs=22.9
Q ss_pred EEEEEeCCeEEEEEeCCCCHHHHHHHHHhh
Q 030222 151 TVMIFKNGEKKDTVIGAVPKSTLTTSIEKF 180 (181)
Q Consensus 151 tl~i~~~G~~~~~~~G~~~~~~l~~~i~~~ 180 (181)
++++|..|+++ ++|..+.+++.+.++.+
T Consensus 140 ~~liF~sGkvv--itGaks~~~~~~a~~~i 167 (174)
T cd04516 140 VLLIFVSGKIV--LTGAKSREEIYQAFENI 167 (174)
T ss_pred EEEEeCCCEEE--EEecCCHHHHHHHHHHH
Confidence 46788899886 67889999999988775
No 310
>COG3411 Ferredoxin [Energy production and conversion]
Probab=48.04 E-value=39 Score=21.09 Aligned_cols=29 Identities=14% Similarity=0.281 Sum_probs=21.6
Q ss_pred ccEEEEEeCCeEEEEEeCCCCHHHHHHHHHhhC
Q 030222 149 IPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 181 (181)
Q Consensus 149 ~Ptl~i~~~G~~~~~~~G~~~~~~l~~~i~~~L 181 (181)
=|+++++.+| .+-+.++.+...+.++++|
T Consensus 17 gPvl~vYpeg----vWY~~V~p~~a~rIv~~hl 45 (64)
T COG3411 17 GPVLVVYPEG----VWYTRVDPEDARRIVQSHL 45 (64)
T ss_pred CCEEEEecCC----eeEeccCHHHHHHHHHHHH
Confidence 4889999888 4455678888888887754
No 311
>cd04516 TBP_eukaryotes eukaryotic TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=47.43 E-value=32 Score=25.86 Aligned_cols=28 Identities=25% Similarity=0.437 Sum_probs=22.9
Q ss_pred EEEEEeCCeEEEEEeCCCCHHHHHHHHHhh
Q 030222 151 TVMIFKNGEKKDTVIGAVPKSTLTTSIEKF 180 (181)
Q Consensus 151 tl~i~~~G~~~~~~~G~~~~~~l~~~i~~~ 180 (181)
|+.+|.+|+++ .+|..+.++....++++
T Consensus 49 t~lIF~SGKiv--iTGaks~e~a~~a~~~i 76 (174)
T cd04516 49 TALIFSSGKMV--CTGAKSEDDSKLAARKY 76 (174)
T ss_pred EEEEECCCeEE--EEecCCHHHHHHHHHHH
Confidence 68899999986 67888998888777664
No 312
>cd00652 TBP_TLF TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA. New members of the TBP family, called TBP-like proteins (TBLP, TLF, TLP) or TBP-related factors (TRF1, TRF2,TRP), are similar to the core domain of TBPs, with identical or chemically similar amino acids at many
Probab=47.35 E-value=32 Score=25.84 Aligned_cols=29 Identities=24% Similarity=0.465 Sum_probs=23.9
Q ss_pred cEEEEEeCCeEEEEEeCCCCHHHHHHHHHhh
Q 030222 150 PTVMIFKNGEKKDTVIGAVPKSTLTTSIEKF 180 (181)
Q Consensus 150 Ptl~i~~~G~~~~~~~G~~~~~~l~~~i~~~ 180 (181)
.|+.+|.+|+++ .+|..+.+++...++++
T Consensus 48 ~t~lIf~sGKiv--itGaks~~~~~~a~~~~ 76 (174)
T cd00652 48 TTALIFSSGKMV--ITGAKSEEDAKLAARKY 76 (174)
T ss_pred EEEEEECCCEEE--EEecCCHHHHHHHHHHH
Confidence 378999999986 67888998888887765
No 313
>PRK00394 transcription factor; Reviewed
Probab=46.95 E-value=33 Score=25.95 Aligned_cols=29 Identities=21% Similarity=0.385 Sum_probs=24.8
Q ss_pred cEEEEEeCCeEEEEEeCCCCHHHHHHHHHhh
Q 030222 150 PTVMIFKNGEKKDTVIGAVPKSTLTTSIEKF 180 (181)
Q Consensus 150 Ptl~i~~~G~~~~~~~G~~~~~~l~~~i~~~ 180 (181)
.|+.+|.+|+++ .+|..+.+++...++++
T Consensus 47 ~t~lIf~sGKiv--~tGa~S~~~a~~a~~~~ 75 (179)
T PRK00394 47 IAALIFRSGKVV--CTGAKSVEDLHEAVKII 75 (179)
T ss_pred eEEEEEcCCcEE--EEccCCHHHHHHHHHHH
Confidence 579999999986 67999999998888775
No 314
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=46.47 E-value=26 Score=24.09 Aligned_cols=31 Identities=16% Similarity=0.248 Sum_probs=21.6
Q ss_pred EEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCC
Q 030222 99 VEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTD 135 (181)
Q Consensus 99 V~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d 135 (181)
..|+-+.|..|+.....+++. ++.+-.+|.-
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~~------~i~~~~~di~ 32 (112)
T cd03034 2 TIYHNPRCSKSRNALALLEEA------GIEPEIVEYL 32 (112)
T ss_pred EEEECCCCHHHHHHHHHHHHC------CCCeEEEecc
Confidence 568899999999988666553 2445555553
No 315
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=46.36 E-value=80 Score=26.32 Aligned_cols=98 Identities=11% Similarity=0.184 Sum_probs=59.4
Q ss_pred cccceeeeccchhhHHHhhCCCcEEEEEECCCChhhhhhhhhHHHHHHHhcC---ceEEEEEeCCCChHHHHHcCC--Cc
Q 030222 74 CEAQETAVEDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVG---KLKCYKVNTDESPSIATRYGI--RS 148 (181)
Q Consensus 74 ~~~~~~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~la~~~~~---~v~~~~vd~d~~~~l~~~y~V--~~ 148 (181)
|...+.+++-++... +.++|.|.+|+|+-+.--...+. .-+.+++++.+ .++++..|.+.-..-...+|- ..
T Consensus 208 cvpLVREiTFeN~EE-LtEEGlPflILf~~kdD~~s~k~--F~~aI~ReL~~e~~~in~l~ADG~~f~hpL~HlgKs~~D 284 (375)
T KOG0912|consen 208 CVPLVREITFENAEE-LTEEGLPFLILFRKKDDKESEKI--FKNAIARELDDETLAINFLTADGKVFKHPLRHLGKSPDD 284 (375)
T ss_pred chhhhhhhhhccHHH-HhhcCCceEEEEecCCcccHHHH--HHHHHHHHhhhhhhccceeecCcceecchHHHhCCCccc
Confidence 556667777777766 45689999999998876443332 22344444433 388888888876666666652 34
Q ss_pred ccEEEE--------EeCCeEEEEEeCCCCHHHHHHHHHhh
Q 030222 149 IPTVMI--------FKNGEKKDTVIGAVPKSTLTTSIEKF 180 (181)
Q Consensus 149 ~Ptl~i--------~~~G~~~~~~~G~~~~~~l~~~i~~~ 180 (181)
.|.+.| |.+++-+. ....|.+++.++
T Consensus 285 LPviaIDsF~Hmylfp~f~di~------~pGkLkqFv~DL 318 (375)
T KOG0912|consen 285 LPVIAIDSFRHMYLFPDFNDIN------IPGKLKQFVADL 318 (375)
T ss_pred CcEEEeeccceeeecCchhhhc------CccHHHHHHHHH
Confidence 555544 44443332 233577776553
No 316
>KOG2244 consensus Highly conserved protein containing a thioredoxin domain [General function prediction only]
Probab=45.87 E-value=61 Score=29.19 Aligned_cols=76 Identities=13% Similarity=0.241 Sum_probs=53.1
Q ss_pred eeeccchhhHHHhhCCCcEEEEEECCCChhhhhhhhhH---HHHHHHhcCceEEEEEeCCCChHHHH--------HcCCC
Q 030222 79 TAVEDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPII---DELSKQYVGKLKCYKVNTDESPSIAT--------RYGIR 147 (181)
Q Consensus 79 ~~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l---~~la~~~~~~v~~~~vd~d~~~~l~~--------~y~V~ 147 (181)
+....+.|+. ...++||+++-..-..|-.|..+...= ++.++....+..-++||-++-|++-+ .+|-.
T Consensus 98 ypwgqeaf~k-ar~enkpifLsvgystchwchvmekesfeneet~~ilnenfv~ikVDREERPDVDK~YM~Fv~assg~G 176 (786)
T KOG2244|consen 98 YPWGQEAFNK-ARAENKPIFLSVGYSTCHWCHVMEKESFENEETGEILNENFVKIKVDREERPDVDKLYMAFVVASSGGG 176 (786)
T ss_pred CcchHHHHHH-HHhcCCCEEEEcccccchheeeeecccccCHHHHHHHhhhhhhhccChhhcCchHHHHHHHHHhccCCC
Confidence 3444666766 566789999999888899999887633 45677777655556777777776554 44667
Q ss_pred cccEEEEE
Q 030222 148 SIPTVMIF 155 (181)
Q Consensus 148 ~~Ptl~i~ 155 (181)
+.|.-+++
T Consensus 177 GWPmsV~L 184 (786)
T KOG2244|consen 177 GWPMSVFL 184 (786)
T ss_pred CCceeEEe
Confidence 88875554
No 317
>PLN00062 TATA-box-binding protein; Provisional
Probab=45.86 E-value=34 Score=25.88 Aligned_cols=28 Identities=25% Similarity=0.423 Sum_probs=23.3
Q ss_pred EEEEEeCCeEEEEEeCCCCHHHHHHHHHhh
Q 030222 151 TVMIFKNGEKKDTVIGAVPKSTLTTSIEKF 180 (181)
Q Consensus 151 tl~i~~~G~~~~~~~G~~~~~~l~~~i~~~ 180 (181)
|+.+|.+|+++ .+|..+.+++...++++
T Consensus 49 t~lIF~SGKiv--iTGaks~e~a~~a~~~~ 76 (179)
T PLN00062 49 TALIFASGKMV--CTGAKSEHDSKLAARKY 76 (179)
T ss_pred EEEEECCCeEE--EEecCCHHHHHHHHHHH
Confidence 78999999987 67888998888777765
No 318
>cd04517 TLF TBP-like factors (TLF; also called TLP, TRF, TRP), which are found in most metazoans. TLFs and TBPs have well-conserved core domains; however, they only share about 60% similarity. TLFs, like TBPs, interact with TFIIA and TFIIB, which are part of the basal transcription machinery. Yet, in contrast to TBPs, TLFs seem not to interact with the TATA-box and even have a negative effect on the transcription of TATA-containing promoters. Recent results indicate that TLFs are involved in the transcription via TATA-less promoters.
Probab=45.85 E-value=34 Score=25.71 Aligned_cols=28 Identities=32% Similarity=0.503 Sum_probs=23.2
Q ss_pred EEEEEeCCeEEEEEeCCCCHHHHHHHHHhh
Q 030222 151 TVMIFKNGEKKDTVIGAVPKSTLTTSIEKF 180 (181)
Q Consensus 151 tl~i~~~G~~~~~~~G~~~~~~l~~~i~~~ 180 (181)
|+++|..|+++ ++|..+.+++.+.++++
T Consensus 141 t~lIF~sGkiv--itGaks~~~~~~a~~~i 168 (174)
T cd04517 141 TLSIFSTGSVT--VTGARSMEDVREAVEKI 168 (174)
T ss_pred EEEEeCCCEEE--EEecCCHHHHHHHHHHH
Confidence 57788888886 67889999999988875
No 319
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=45.67 E-value=27 Score=24.12 Aligned_cols=32 Identities=13% Similarity=0.239 Sum_probs=22.6
Q ss_pred EEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCCC
Q 030222 99 VEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDE 136 (181)
Q Consensus 99 V~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~ 136 (181)
..|+-+.|..|++....+++. ++.+-.+|..+
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~~------~i~~~~~di~~ 33 (114)
T TIGR00014 2 TIYHNPRCSKSRNTLALLEDK------GIEPEVVKYLK 33 (114)
T ss_pred EEEECCCCHHHHHHHHHHHHC------CCCeEEEeccC
Confidence 468899999999998777663 24455555543
No 320
>cd04517 TLF TBP-like factors (TLF; also called TLP, TRF, TRP), which are found in most metazoans. TLFs and TBPs have well-conserved core domains; however, they only share about 60% similarity. TLFs, like TBPs, interact with TFIIA and TFIIB, which are part of the basal transcription machinery. Yet, in contrast to TBPs, TLFs seem not to interact with the TATA-box and even have a negative effect on the transcription of TATA-containing promoters. Recent results indicate that TLFs are involved in the transcription via TATA-less promoters.
Probab=45.62 E-value=37 Score=25.52 Aligned_cols=28 Identities=14% Similarity=0.334 Sum_probs=23.3
Q ss_pred EEEEEeCCeEEEEEeCCCCHHHHHHHHHhh
Q 030222 151 TVMIFKNGEKKDTVIGAVPKSTLTTSIEKF 180 (181)
Q Consensus 151 tl~i~~~G~~~~~~~G~~~~~~l~~~i~~~ 180 (181)
|+.+|.+|+++ .+|..+.++++..++++
T Consensus 49 t~lIF~sGKiv--iTGaks~~~~~~a~~~~ 76 (174)
T cd04517 49 TASVWSSGKIT--ITGATSEEEAKQAARRA 76 (174)
T ss_pred EEEEECCCeEE--EEccCCHHHHHHHHHHH
Confidence 68889999986 67888998888887765
No 321
>cd04518 TBP_archaea archaeal TATA box binding protein (TBP): TBPs are transcription factors present in archaea and eukaryotes, that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=45.56 E-value=36 Score=25.64 Aligned_cols=29 Identities=21% Similarity=0.425 Sum_probs=24.1
Q ss_pred cEEEEEeCCeEEEEEeCCCCHHHHHHHHHhh
Q 030222 150 PTVMIFKNGEKKDTVIGAVPKSTLTTSIEKF 180 (181)
Q Consensus 150 Ptl~i~~~G~~~~~~~G~~~~~~l~~~i~~~ 180 (181)
.++.+|.+|+++ .+|..+.++....++++
T Consensus 48 ~t~lIF~SGKiv--~tGaks~~~a~~a~~~~ 76 (174)
T cd04518 48 IAALIFRSGKMV--CTGAKSVEDLHRAVKEI 76 (174)
T ss_pred EEEEEECCCeEE--EEccCCHHHHHHHHHHH
Confidence 378999999987 67999998888887765
No 322
>PF07511 DUF1525: Protein of unknown function (DUF1525); InterPro: IPR011090 This family of proteins is restricted to the Gammaproteobacteria. Members belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=45.16 E-value=50 Score=23.12 Aligned_cols=15 Identities=33% Similarity=0.406 Sum_probs=13.3
Q ss_pred HHHcCCCcccEEEEE
Q 030222 141 ATRYGIRSIPTVMIF 155 (181)
Q Consensus 141 ~~~y~V~~~Ptl~i~ 155 (181)
+..|||+.+|.++|.
T Consensus 76 Aw~lgi~k~PAVVfD 90 (114)
T PF07511_consen 76 AWSLGITKYPAVVFD 90 (114)
T ss_pred HHHhCccccCEEEEc
Confidence 568899999999986
No 323
>TIGR03757 conj_TIGR03757 integrating conjugative element protein, PFL_4709 family. Members of this protein belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=44.97 E-value=55 Score=22.90 Aligned_cols=34 Identities=24% Similarity=0.349 Sum_probs=21.7
Q ss_pred HHHcCCCcccEEEEEeCCeEEEEEeCCCCHHHHHHHHH
Q 030222 141 ATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIE 178 (181)
Q Consensus 141 ~~~y~V~~~Ptl~i~~~G~~~~~~~G~~~~~~l~~~i~ 178 (181)
+..|||+.+|.+++.+. +.+-|..+-..=...++
T Consensus 77 Aw~lGi~k~PAVV~D~~----~VVYG~~DV~~A~~~~~ 110 (113)
T TIGR03757 77 AWQLGVTKIPAVVVDRR----YVVYGETDVARALALIQ 110 (113)
T ss_pred HHHcCCccCCEEEEcCC----eEEecCccHHHHHHHHH
Confidence 56889999999998632 33446555544444433
No 324
>PRK13738 conjugal transfer pilus assembly protein TraW; Provisional
Probab=44.64 E-value=36 Score=26.51 Aligned_cols=31 Identities=19% Similarity=0.419 Sum_probs=24.0
Q ss_pred EeCCCChHHHHHcCCCcccEEEE-EeCCeEEE
Q 030222 132 VNTDESPSIATRYGIRSIPTVMI-FKNGEKKD 162 (181)
Q Consensus 132 vd~d~~~~l~~~y~V~~~Ptl~i-~~~G~~~~ 162 (181)
+..|.++.|.++|||+.+|.++. ..+|+...
T Consensus 167 vYfdQ~G~Lt~rF~I~~VPAvV~~~q~G~~l~ 198 (209)
T PRK13738 167 IYFDQNGVLCQRFGIDQVPARVSAVPGGRFLK 198 (209)
T ss_pred eEEcCcchHHHhcCCeeeceEEEEcCCCCEEE
Confidence 34467778999999999999885 26777654
No 325
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=44.40 E-value=44 Score=20.60 Aligned_cols=57 Identities=7% Similarity=0.131 Sum_probs=35.8
Q ss_pred EEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCCC----ChHHHHHcCCCcccEEEEEeCCeEE
Q 030222 99 VEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDE----SPSIATRYGIRSIPTVMIFKNGEKK 161 (181)
Q Consensus 99 V~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~----~~~l~~~y~V~~~Ptl~i~~~G~~~ 161 (181)
..|+.+.++.|+...-.+.+..-+ .....++..+ .+++........+|++.. +|..+
T Consensus 2 ~ly~~~~s~~~~~v~~~l~~~g~~----~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~--~~~~l 62 (76)
T cd03050 2 KLYYDLMSQPSRAVYIFLKLNKIP----FEECPIDLRKGEQLTPEFKKINPFGKVPAIVD--GDFTL 62 (76)
T ss_pred EEeeCCCChhHHHHHHHHHHcCCC----cEEEEecCCCCCcCCHHHHHhCcCCCCCEEEE--CCEEE
Confidence 357778899998887666654332 3445555432 245666667789999863 55543
No 326
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=44.13 E-value=39 Score=24.87 Aligned_cols=30 Identities=7% Similarity=0.042 Sum_probs=25.1
Q ss_pred EEECCCChhhhhhhhhHHHHHHHhcCceEE
Q 030222 100 EFWAPWCGPCRMIHPIIDELSKQYVGKLKC 129 (181)
Q Consensus 100 ~F~a~wC~~C~~~~p~l~~la~~~~~~v~~ 129 (181)
+|+..-||.|-...+.++++.++++-.+.+
T Consensus 3 ~~~D~~cP~cy~~~~~l~~~~~~~~~~i~~ 32 (192)
T cd03022 3 FYFDFSSPYSYLAHERLPALAARHGATVRY 32 (192)
T ss_pred EEEeCCChHHHHHHHHHHHHHHHhCCeeEE
Confidence 578889999999999999999988644444
No 327
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=43.15 E-value=75 Score=25.03 Aligned_cols=49 Identities=16% Similarity=0.205 Sum_probs=36.1
Q ss_pred hhhhhhhhhHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEeCCeEEEE
Q 030222 107 GPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDT 163 (181)
Q Consensus 107 ~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~y~V~~~Ptl~i~~~G~~~~~ 163 (181)
.||..++..+.+++++++..+.++-=|+ +++..|.- .++-+++|+++..
T Consensus 169 kHsv~iMk~Lrrla~el~KtiviVlHDI----NfAS~YsD----~IVAlK~G~vv~~ 217 (252)
T COG4604 169 KHSVQIMKILRRLADELGKTIVVVLHDI----NFASCYSD----HIVALKNGKVVKQ 217 (252)
T ss_pred HHHHHHHHHHHHHHHHhCCeEEEEEecc----cHHHhhhh----heeeecCCEEEec
Confidence 5999999999999999986554444455 35555532 4677899998864
No 328
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=42.61 E-value=86 Score=19.74 Aligned_cols=66 Identities=14% Similarity=0.198 Sum_probs=36.6
Q ss_pred CCCChhhhhhhhhHHHHHHHhcCceEEEEEeCCCChHHHHH---cCCCcccEEEEEeCCeEEEEEeCCCCHHHHHHHHHh
Q 030222 103 APWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATR---YGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEK 179 (181)
Q Consensus 103 a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~---y~V~~~Ptl~i~~~G~~~~~~~G~~~~~~l~~~i~~ 179 (181)
.+||++|.+..-.+.+..-. .....++..+....... -....+|++.. .+|+.+. ....+.++|++
T Consensus 13 ~~~Sp~~~kv~~~L~~~~i~----~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~-~~~~~l~------eS~aI~~yL~~ 81 (84)
T cd03038 13 RAFSPNVWKTRLALNHKGLE----YKTVPVEFPDIPPILGELTSGGFYTVPVIVD-GSGEVIG------DSFAIAEYLEE 81 (84)
T ss_pred CCcCChhHHHHHHHHhCCCC----CeEEEecCCCcccccccccCCCCceeCeEEE-CCCCEEe------CHHHHHHHHHH
Confidence 46899999988776664333 33445554332222222 23568898853 3265532 45556666654
No 329
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=41.03 E-value=86 Score=19.28 Aligned_cols=57 Identities=9% Similarity=0.049 Sum_probs=36.2
Q ss_pred EEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCC---CChHHHHHcCCCcccEEEEEeCCeEE
Q 030222 100 EFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTD---ESPSIATRYGIRSIPTVMIFKNGEKK 161 (181)
Q Consensus 100 ~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d---~~~~l~~~y~V~~~Ptl~i~~~G~~~ 161 (181)
.|+.+.|+.|....-.+++.. -.+....+|.. ..+++.+..-...+|++... +|..+
T Consensus 3 Ly~~~~~~~~~~~~~~l~~~g----i~~~~~~v~~~~~~~~~~~~~~nP~~~vP~L~~~-~g~~l 62 (75)
T cd03044 3 LYTYPGNPRSLKILAAAKYNG----LDVEIVDFQPGKENKTPEFLKKFPLGKVPAFEGA-DGFCL 62 (75)
T ss_pred EecCCCCccHHHHHHHHHHcC----CceEEEecccccccCCHHHHHhCCCCCCCEEEcC-CCCEE
Confidence 467778899988876666542 22445555553 24556666667899999653 45544
No 330
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=40.78 E-value=85 Score=19.17 Aligned_cols=66 Identities=11% Similarity=0.186 Sum_probs=37.9
Q ss_pred CChhhhhhhhhHHHHHHHhcCceEEEEEe---CCCChHHHHHcCCCcccEEEEEeCCeEEEEEeCCCCHHHHHHHHHh
Q 030222 105 WCGPCRMIHPIIDELSKQYVGKLKCYKVN---TDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEK 179 (181)
Q Consensus 105 wC~~C~~~~p~l~~la~~~~~~v~~~~vd---~d~~~~l~~~y~V~~~Ptl~i~~~G~~~~~~~G~~~~~~l~~~i~~ 179 (181)
+||+|++..=.+++..-.+. +.++... .+..+.+.+--+-..+|++.. .+|+++. +-..+.+.|++
T Consensus 1 ~sP~a~Rv~i~l~~~gl~~~--~~~v~~~~~~~~~~~~~~~~~p~~~VP~L~~-~~g~vi~------eS~~I~~yL~~ 69 (70)
T PF13409_consen 1 FSPFAHRVRIALEEKGLPYE--IKVVPLIPKGEQKPPEFLALNPRGKVPVLVD-PDGTVIN------ESLAILEYLEE 69 (70)
T ss_dssp T-HHHHHHHHHHHHHTGTCE--EEEEETTTTBCTTCHBHHHHSTT-SSSEEEE-TTTEEEE------SHHHHHHHHHH
T ss_pred CchHhHHHHHHHHHhCCCCE--EEEEeeecCccccChhhhccCcCeEEEEEEE-CCCCEee------CHHHHHHHHhc
Confidence 59999998877776633332 3333111 112246766667788999886 4777443 45556666654
No 331
>PF10589 NADH_4Fe-4S: NADH-ubiquinone oxidoreductase-F iron-sulfur binding region; InterPro: IPR019575 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry describes the F subunit of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoF. This family does not have any members in chloroplast or cyanobacteria, where the quinone may be plastoquinone and NADH may be replaced by NADPH, nor in Methanosarcina, where NADH is replaced by F420H2. This entry represents the iron-sulphur binding domain of the F subunit.; GO: 0055114 oxidation-reduction process; PDB: 3IAS_S 2FUG_A 3I9V_A 3M9S_1 3IAM_A 2YBB_1.
Probab=39.41 E-value=18 Score=20.87 Aligned_cols=20 Identities=30% Similarity=0.556 Sum_probs=15.2
Q ss_pred CChhhhhhhhhHHHHHHHhc
Q 030222 105 WCGPCRMIHPIIDELSKQYV 124 (181)
Q Consensus 105 wC~~C~~~~p~l~~la~~~~ 124 (181)
+|.||+.-.+.+.++.++..
T Consensus 18 kC~PCR~Gt~~l~~~l~~i~ 37 (46)
T PF10589_consen 18 KCTPCREGTRQLAEILEKIV 37 (46)
T ss_dssp --HHHHCCCCHHHHHHHHHT
T ss_pred CCCCcHhHHHHHHHHHHHHH
Confidence 69999999999988877664
No 332
>TIGR03765 ICE_PFL_4695 integrating conjugative element protein, PFL_4695 family. This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=39.15 E-value=31 Score=23.76 Aligned_cols=36 Identities=25% Similarity=0.408 Sum_probs=25.1
Q ss_pred hHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEE
Q 030222 115 IIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMI 154 (181)
Q Consensus 115 ~l~~la~~~~~~v~~~~vd~d~~~~l~~~y~V~~~Ptl~i 154 (181)
.++++.+-.+ ++.+.-++.| ++++++|++.||.++-
T Consensus 64 ~l~~Lr~lap-gl~l~P~sgd---dLa~rL~l~hYPvLit 99 (105)
T TIGR03765 64 ALQRLRALAP-GLPLLPVSGD---DLAERLGLRHYPVLIT 99 (105)
T ss_pred HHHHHHHHcC-CCcccCCCHH---HHHHHhCCCcccEEEe
Confidence 4555544444 3566666665 8999999999998763
No 333
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=38.61 E-value=36 Score=23.79 Aligned_cols=23 Identities=22% Similarity=0.527 Sum_probs=19.0
Q ss_pred EEEEEECCCChhhhhhhhhHHHH
Q 030222 97 VLVEFWAPWCGPCRMIHPIIDEL 119 (181)
Q Consensus 97 vlV~F~a~wC~~C~~~~p~l~~l 119 (181)
.+..|+.+.|..|+.....+++.
T Consensus 2 ~itiy~~p~C~t~rka~~~L~~~ 24 (117)
T COG1393 2 MITIYGNPNCSTCRKALAWLEEH 24 (117)
T ss_pred eEEEEeCCCChHHHHHHHHHHHc
Confidence 46678999999999998777664
No 334
>PF07700 HNOB: Heme NO binding; InterPro: IPR011644 This ligand-binding domain is found in soluble guanylate cyclases. In soluble guanylate cyclases this domain binds heme via a covalent linkage to histidine []. Soluble guanylate cyclases are nitric oxide-responsive signaling proteins.; GO: 0020037 heme binding; PDB: 3TFE_A 2O0C_B 3TFA_A 2O09_B 2O0G_B 3L6J_A 3TFG_B 3TF8_A 3TFF_A 3TF9_B ....
Probab=38.22 E-value=81 Score=23.28 Aligned_cols=42 Identities=14% Similarity=0.321 Sum_probs=35.3
Q ss_pred CCcEEEEEECCCChhhhhhhhhHHHHHHHhcC-ceEEEEEeCC
Q 030222 94 GSPVLVEFWAPWCGPCRMIHPIIDELSKQYVG-KLKCYKVNTD 135 (181)
Q Consensus 94 ~~~vlV~F~a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~d 135 (181)
++-+.+.++++.++.|.-+...+..+++.+.+ ++.+-.++..
T Consensus 127 ~~~l~l~Y~S~R~gl~~~~~Gli~g~A~~f~~~~v~i~~~~~~ 169 (171)
T PF07700_consen 127 DNELTLHYRSPRPGLCPYVIGLIRGAAKHFFELDVEIEHVECM 169 (171)
T ss_dssp TTEEEEEEEESSSSTHHHHHHHHHHHHHHTTEEEEEEEEEECC
T ss_pred CCEEEEEEECCCcCHHHHHHHHHHHHHHHhCCCCeEEEEeccc
Confidence 45678888999999999999999999999987 6777666653
No 335
>PF11072 DUF2859: Protein of unknown function (DUF2859); InterPro: IPR021300 This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=38.14 E-value=36 Score=24.83 Aligned_cols=36 Identities=22% Similarity=0.380 Sum_probs=24.6
Q ss_pred hHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEE
Q 030222 115 IIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMI 154 (181)
Q Consensus 115 ~l~~la~~~~~~v~~~~vd~d~~~~l~~~y~V~~~Ptl~i 154 (181)
.++++.+--+ .+.+.-++.| +|+++++++.||.++-
T Consensus 102 ~L~~Lr~lap-gl~l~P~sgd---dLA~rL~l~HYPvLIt 137 (142)
T PF11072_consen 102 ALQRLRQLAP-GLPLLPVSGD---DLARRLGLSHYPVLIT 137 (142)
T ss_pred HHHHHHHHcC-CCeecCCCHH---HHHHHhCCCcccEEee
Confidence 4444444433 3666666655 8999999999998763
No 336
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=37.22 E-value=45 Score=22.65 Aligned_cols=67 Identities=12% Similarity=0.053 Sum_probs=33.8
Q ss_pred EEEECCCChhhhhhhhhHHHHHHHhc-CceEEEEEeCCCChHHHHHcC--C--------CcccEE-EEEeCCeEEEEEe
Q 030222 99 VEFWAPWCGPCRMIHPIIDELSKQYV-GKLKCYKVNTDESPSIATRYG--I--------RSIPTV-MIFKNGEKKDTVI 165 (181)
Q Consensus 99 V~F~a~wC~~C~~~~p~l~~la~~~~-~~v~~~~vd~d~~~~l~~~y~--V--------~~~Ptl-~i~~~G~~~~~~~ 165 (181)
|..|-+.+..-..+...-+++..-+. .++.+-.+|+..+++..+.+. + .+.|-. -+|.+++.++.|.
T Consensus 3 I~vy~ss~sg~~~ikk~q~~v~~iL~a~kI~fe~vDIa~~e~~r~~mr~~~g~~~~~~~~~~~lpPqiF~~~~Y~Gdye 81 (99)
T PF04908_consen 3 IKVYISSISGSREIKKRQQRVLMILEAKKIPFEEVDIAMDEEARQWMRENAGPEEKDPGNGKPLPPQIFNGDEYCGDYE 81 (99)
T ss_dssp EEEEE-SS-SSHHHHHHHHHHHHHHHHTT--EEEEETTT-HHHHHHHHHHT--CCCS-TSTT--S-EEEETTEEEEEHH
T ss_pred EEEEEecccCCHHHHHHHHHHHHHHHHcCCCcEEEeCcCCHHHHHHHHHhccccccCCCCCCCCCCEEEeCCEEEeeHH
Confidence 44444556656666666666555444 358999999987765332221 1 222221 3456888776544
No 337
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=37.07 E-value=56 Score=22.79 Aligned_cols=51 Identities=16% Similarity=0.400 Sum_probs=35.6
Q ss_pred CChhhhhhhhhHHHHHHHhcCceEEEEEeCCCCh-HHHHHcCC--CcccEEEEEe
Q 030222 105 WCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESP-SIATRYGI--RSIPTVMIFK 156 (181)
Q Consensus 105 wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~-~l~~~y~V--~~~Ptl~i~~ 156 (181)
.|++|..+...|.- .-.+...+.+..|+...-. .+....|- ++.|++++-.
T Consensus 23 ~Cp~c~~iEGlLa~-~P~l~~~ldV~rV~f~RPR~~vi~llGE~~QslPvLVL~~ 76 (112)
T PF11287_consen 23 YCPHCAAIEGLLAS-FPDLRERLDVRRVDFPRPRQAVIALLGEANQSLPVLVLAD 76 (112)
T ss_pred ECCchHHHHhHHhh-ChhhhhcccEEEeCCCCchHHHHHHhChhccCCCEEEeCC
Confidence 49999999877654 2333446888999987643 45555554 6899988764
No 338
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=36.51 E-value=1.1e+02 Score=19.06 Aligned_cols=68 Identities=10% Similarity=0.092 Sum_probs=38.2
Q ss_pred EECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCC----CChHHHHHcCCCcccEEEEEeC--CeEEEEEeCCCCHHHHH
Q 030222 101 FWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTD----ESPSIATRYGIRSIPTVMIFKN--GEKKDTVIGAVPKSTLT 174 (181)
Q Consensus 101 F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d----~~~~l~~~y~V~~~Ptl~i~~~--G~~~~~~~G~~~~~~l~ 174 (181)
+|...++.|+...-.+++..-+ +....++.. ..+++.+......+|++.. .+ |..+. ....+.
T Consensus 4 Ly~~~~~~~~~v~~~l~~~gl~----~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~-~~~~g~~l~------eS~aI~ 72 (81)
T cd03048 4 LYTHGTPNGFKVSIMLEELGLP----YEIHPVDISKGEQKKPEFLKINPNGRIPAIVD-HNGTPLTVF------ESGAIL 72 (81)
T ss_pred EEeCCCCChHHHHHHHHHcCCC----cEEEEecCcCCcccCHHHHHhCcCCCCCEEEe-CCCCceEEE------cHHHHH
Confidence 3433359999888777765333 344455532 2345666566778999854 32 54432 334455
Q ss_pred HHHHh
Q 030222 175 TSIEK 179 (181)
Q Consensus 175 ~~i~~ 179 (181)
.+|.+
T Consensus 73 ~yL~~ 77 (81)
T cd03048 73 LYLAE 77 (81)
T ss_pred HHHHH
Confidence 55543
No 339
>PF06491 Disulph_isomer: Disulphide isomerase; InterPro: IPR009474 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 3FHK_F.
Probab=35.24 E-value=1.7e+02 Score=21.08 Aligned_cols=96 Identities=17% Similarity=0.250 Sum_probs=47.5
Q ss_pred eeccchhhHHHhhCCCcEEEEEECCCChhhhh--hhhhHHHHHH--HhcCceEEEEEeCCCChH---HHHHcCCC---cc
Q 030222 80 AVEDATWQSLVLDSGSPVLVEFWAPWCGPCRM--IHPIIDELSK--QYVGKLKCYKVNTDESPS---IATRYGIR---SI 149 (181)
Q Consensus 80 ~l~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~--~~p~l~~la~--~~~~~v~~~~vd~d~~~~---l~~~y~V~---~~ 149 (181)
..+.++.+..+...++.++|..- +-|| |-. ..|-...... +-++ +++.|-.-.+.+ -++.|=.. +-
T Consensus 21 L~T~e~Vd~~~~~~~GTtlVvVN-SVCG-CAag~ARPa~~~al~~~kkPD--~lvTVFAGqDkEAt~~aR~yf~~~pPSS 96 (136)
T PF06491_consen 21 LTTAEEVDEALKNKEGTTLVVVN-SVCG-CAAGNARPAAAMALQNDKKPD--HLVTVFAGQDKEATAKAREYFEPYPPSS 96 (136)
T ss_dssp --SHHHHHHHHHH--SEEEEEEE--SSH-HHHHTHHHHHHHHHHHSS--S--EEEEEETTTSHHHHHHHHHTSTTS---S
T ss_pred cCCHHHHHHHHhCCCCcEEEEEe-cccc-ccccccCHHHHHHHhCCCCCC--ceEEeccCCCHHHHHHHHHhcCCCCCCC
Confidence 34556666655545555665544 4575 322 3444333222 2233 455555544443 24555433 45
Q ss_pred cEEEEEeCCeEEEEEe----CCCCHHHHHHHHHh
Q 030222 150 PTVMIFKNGEKKDTVI----GAVPKSTLTTSIEK 179 (181)
Q Consensus 150 Ptl~i~~~G~~~~~~~----G~~~~~~l~~~i~~ 179 (181)
|.+.+||+|++++-+. .-.+.+.+.+.|..
T Consensus 97 PS~ALfKdGelvh~ieRh~IEGr~a~~Ia~~L~~ 130 (136)
T PF06491_consen 97 PSIALFKDGELVHFIERHHIEGRPAEEIAENLQD 130 (136)
T ss_dssp SEEEEEETTEEEEEE-GGGTTTS-HHHHHHHHHH
T ss_pred chheeeeCCEEEEEeehhhcCCCCHHHHHHHHHH
Confidence 5899999999998543 12566666666654
No 340
>TIGR02174 CXXU_selWTH selT/selW/selH selenoprotein domain. This model represents a domain found in both bacteria and animals, including animal proteins SelT, SelW, and SelH, all of which are selenoproteins. In a CXXC motif near the N-terminus of the domain, selenocysteine may replace the second Cys. Proteins with this domain may include an insert of about 70 amino acids. This model is broader than the current SelW model pfam05169 in Pfam.
Probab=35.05 E-value=73 Score=20.01 Aligned_cols=26 Identities=19% Similarity=0.044 Sum_probs=17.5
Q ss_pred EEEEeCCeEEEEE---eCCCCHHHHHHHH
Q 030222 152 VMIFKNGEKKDTV---IGAVPKSTLTTSI 177 (181)
Q Consensus 152 l~i~~~G~~~~~~---~G~~~~~~l~~~i 177 (181)
|-+.-||+.+..- .|+.+.+++.+.|
T Consensus 43 Fev~~~g~~v~sk~~~~~fp~~~~~~~~i 71 (72)
T TIGR02174 43 FEVTVNGQLVWSKLRGGGFPEPEELKQLI 71 (72)
T ss_pred EEEEECCEEEEEeccCCCCCCHHHHHHhh
Confidence 5555688887733 3667778777765
No 341
>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=34.49 E-value=1e+02 Score=22.88 Aligned_cols=56 Identities=13% Similarity=0.085 Sum_probs=36.9
Q ss_pred eeeccchhhHHHhh--CCC-cEEEEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCC
Q 030222 79 TAVEDATWQSLVLD--SGS-PVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTD 135 (181)
Q Consensus 79 ~~l~~~~~~~~~~~--~~~-~vlV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d 135 (181)
..+...+...+.+. .+| .++..|=+-.-+-|-.....+++.+.++.+ ..++.|..|
T Consensus 27 ftl~~~dL~~v~l~~~~gk~~vi~v~PSiDT~VC~~qvr~Fn~~aa~~~~-~~Vl~IS~D 85 (158)
T COG2077 27 FTLVGKDLNDVSLADFAGKKKVISVFPSIDTPVCATQVRKFNEEAAKLGN-TVVLCISMD 85 (158)
T ss_pred eEEEcCcccceeccccCCceEEEEEccCCCCchhhHHHHHHHHHHhccCC-cEEEEEeCC
Confidence 33333444443333 355 445555566679999999999999999985 667777664
No 342
>PF00708 Acylphosphatase: Acylphosphatase; InterPro: IPR001792 Acylphosphatase (3.6.1.7 from EC) is an enzyme of approximately 98 amino acid residues that specifically catalyses the hydrolysis of the carboxyl-phosphate bond of acylphosphates [], its substrates including 1,3-diphosphoglycerate and carbamyl phosphate []. The enzyme has a mainly beta-sheet structure with 2 short alpha-helical segments. It is distributed in a tissue-specific manner in a wide variety of species, although its physiological role is as yet unknown []: it may, however, play a part in the regulation of the glycolytic pathway and pyrimidine biosynthesis []. There are two known isozymes. One seems to be specific to muscular tissues, the other, called 'organ-common type', is found in many different tissues. While bacterial and archebacterial hypothetical proteins that are highly similar to that enzyme and that probably possess the same activity. These proteins include: Escherichia coli putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yccX). Bacillus subtilis putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yflL). Archaeoglobus fulgidus putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (O29440 from SWISSPROT). An acylphosphatase-like domain is also found in some prokaryotic hydrogenase maturation HypF carbamoyltransferases [, ].; PDB: 1APS_A 1GXT_A 1GXU_A 2HLT_A 2FHM_A 2HLU_A 3BR8_A 1ULR_A 3TRG_A 2BJD_A ....
Probab=34.04 E-value=90 Score=20.36 Aligned_cols=37 Identities=22% Similarity=0.263 Sum_probs=23.2
Q ss_pred HHHHHcCCCcccEEEEEeCCeEEEEEeCCCCHHHHHHHHHh
Q 030222 139 SIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEK 179 (181)
Q Consensus 139 ~l~~~y~V~~~Ptl~i~~~G~~~~~~~G~~~~~~l~~~i~~ 179 (181)
.++.++|+.++ +.-..+|.+.....| +.+.+.++++.
T Consensus 25 ~~A~~~gl~G~--V~N~~dg~V~i~~~G--~~~~l~~f~~~ 61 (91)
T PF00708_consen 25 RIARKLGLTGW--VRNLPDGSVEIEAEG--EEEQLEEFIKW 61 (91)
T ss_dssp HHHHHTT-EEE--EEE-TTSEEEEEEEE--EHHHHHHHHHH
T ss_pred HHHHHhCCceE--EEECCCCEEEEEEEe--CHHHHHHHHHH
Confidence 57888888887 333357767777777 55556666554
No 343
>COG3054 Predicted transcriptional regulator [General function prediction only]
Probab=33.42 E-value=1.9e+02 Score=21.57 Aligned_cols=39 Identities=21% Similarity=0.362 Sum_probs=29.4
Q ss_pred HHH-HcCCCcccE--EEEEeCCeEEEEEeCCCCHHHHHHHHH
Q 030222 140 IAT-RYGIRSIPT--VMIFKNGEKKDTVIGAVPKSTLTTSIE 178 (181)
Q Consensus 140 l~~-~y~V~~~Pt--l~i~~~G~~~~~~~G~~~~~~l~~~i~ 178 (181)
.++ .|+.+.--. +++.++|++.....|.++..++.+.|+
T Consensus 136 vak~AWqL~e~~SaivVlDk~G~VkfvkeGaLt~aevQ~Vi~ 177 (184)
T COG3054 136 VAKNAWQLKEESSAVVVLDKDGRVKFVKEGALTQAEVQQVID 177 (184)
T ss_pred hhhhhhccccccceEEEEcCCCcEEEEecCCccHHHHHHHHH
Confidence 444 677765553 555689999999999999888877765
No 344
>TIGR03107 glu_aminopep glutamyl aminopeptidase. This model represents the M42.001 clade within MEROPS family M42. M42 includes glutamyl aminopeptidase as in the present model, deblocking aminopeptidases as from Pyrococcus horikoshii and related species, and endo-1,4-beta-glucanase (cellulase M) as from Clostridium thermocellum. The current family includes
Probab=33.33 E-value=2.3e+02 Score=23.83 Aligned_cols=81 Identities=10% Similarity=0.051 Sum_probs=51.8
Q ss_pred CcEEEEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEeCCeEEEEEeCCCCHHHHH
Q 030222 95 SPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLT 174 (181)
Q Consensus 95 ~~vlV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~y~V~~~Ptl~i~~~G~~~~~~~G~~~~~~l~ 174 (181)
.|++ .++.....+-+.+...+.++|++.+-.++......-.+.+ +-.+.-.++||+.+--.-+.++...+..+.+++.
T Consensus 251 Gp~i-~~~D~~~i~~~~l~~~l~~~A~~~~I~~Q~~~~~gGtDa~-~~~~~~~Gvpt~~i~ip~Ry~Hs~~e~i~~~D~~ 328 (350)
T TIGR03107 251 GTLL-RFFDPGHIMLPRMKDFLLTTAEEAGIKYQYYVAKGGTDAG-AAHLKNSGVPSTTIGVCARYIHSHQTLYSIDDFL 328 (350)
T ss_pred CceE-EEecCCCCCCHHHHHHHHHHHHHcCCCcEEecCCCCchHH-HHHHhCCCCcEEEEccCcccccChhheeeHHHHH
Confidence 3554 5777888889999999999999987666652211111222 2245667999988765555555555555665555
Q ss_pred HHH
Q 030222 175 TSI 177 (181)
Q Consensus 175 ~~i 177 (181)
+.+
T Consensus 329 ~~~ 331 (350)
T TIGR03107 329 AAQ 331 (350)
T ss_pred HHH
Confidence 544
No 345
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=32.73 E-value=84 Score=25.65 Aligned_cols=81 Identities=12% Similarity=0.067 Sum_probs=46.6
Q ss_pred CCCcEEEEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeC------CCChHHHHHcCCC-cccEEEEEeCCeEEEEEe
Q 030222 93 SGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNT------DESPSIATRYGIR-SIPTVMIFKNGEKKDTVI 165 (181)
Q Consensus 93 ~~~~vlV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~------d~~~~l~~~y~V~-~~Ptl~i~~~G~~~~~~~ 165 (181)
......|..|+.-|..-..+.| +++..+-+ .++.|-. +.++.+..+|... +.|.+..+-=|++.- +.
T Consensus 73 ~~~t~~IR~Y~sDCn~le~v~p----Aa~~~g~k-v~lGiw~tdd~~~~~~~til~ay~~~~~~d~v~~v~VGnEal-~r 146 (305)
T COG5309 73 ASYTHSIRTYGSDCNTLENVLP----AAEASGFK-VFLGIWPTDDIHDAVEKTILSAYLPYNGWDDVTTVTVGNEAL-NR 146 (305)
T ss_pred ccCCceEEEeeccchhhhhhHH----HHHhcCce-EEEEEeeccchhhhHHHHHHHHHhccCCCCceEEEEechhhh-hc
Confidence 3445588889977665433333 34444422 2233321 1233566777664 678766665444432 45
Q ss_pred CCCCHHHHHHHHHh
Q 030222 166 GAVPKSTLTTSIEK 179 (181)
Q Consensus 166 G~~~~~~l~~~i~~ 179 (181)
|..+.++|.+.|+.
T Consensus 147 ~~~tasql~~~I~~ 160 (305)
T COG5309 147 NDLTASQLIEYIDD 160 (305)
T ss_pred CCCCHHHHHHHHHH
Confidence 67899999998875
No 346
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=32.62 E-value=2.5e+02 Score=22.12 Aligned_cols=52 Identities=13% Similarity=-0.003 Sum_probs=35.0
Q ss_pred CCChhhhhhhhhHHHHHHHhcCceEEEEEeCCCC-hHHHHHcCCCcccEEEEEeCCeEE
Q 030222 104 PWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDES-PSIATRYGIRSIPTVMIFKNGEKK 161 (181)
Q Consensus 104 ~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~-~~l~~~y~V~~~Ptl~i~~~G~~~ 161 (181)
.-|++|+...-.+.+. +-.+.+..+|.... +++.+..-...+|++.- +|..+
T Consensus 17 ~~cp~~~rv~i~L~ek----gi~~e~~~vd~~~~~~~fl~inP~g~vPvL~~--~g~~l 69 (236)
T TIGR00862 17 GNCPFSQRLFMILWLK----GVVFNVTTVDLKRKPEDLQNLAPGTHPPFLTY--NTEVK 69 (236)
T ss_pred CCCHhHHHHHHHHHHc----CCCcEEEEECCCCCCHHHHHHCcCCCCCEEEE--CCEEe
Confidence 4599999988776652 22366777777654 56666666678999863 56544
No 347
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=32.61 E-value=1.5e+02 Score=19.64 Aligned_cols=35 Identities=14% Similarity=0.112 Sum_probs=22.8
Q ss_pred ceEEEEEeCCCChHHHHHc--------CCCcccEEEEEeCCeEEE
Q 030222 126 KLKCYKVNTDESPSIATRY--------GIRSIPTVMIFKNGEKKD 162 (181)
Q Consensus 126 ~v~~~~vd~d~~~~l~~~y--------~V~~~Ptl~i~~~G~~~~ 162 (181)
++.+-.+|++.+++..+.. +-..+|-+++ +|+.++
T Consensus 30 ~I~f~eiDI~~d~~~r~em~~~~~~~~g~~tvPQIFi--~~~~iG 72 (92)
T cd03030 30 KIEFEEVDISMNEENRQWMRENVPNENGKPLPPQIFN--GDEYCG 72 (92)
T ss_pred CCceEEEecCCCHHHHHHHHHhcCCCCCCCCCCEEEE--CCEEee
Confidence 4889999998776644332 3456777664 666654
No 348
>PRK15113 glutathione S-transferase; Provisional
Probab=32.40 E-value=2.2e+02 Score=21.45 Aligned_cols=61 Identities=13% Similarity=0.146 Sum_probs=38.8
Q ss_pred CcEEEEEECC--CChhhhhhhhhHHHHHHHhcCceEEEEEeCCC----ChHHHHHcCCCcccEEEEEeCCeEE
Q 030222 95 SPVLVEFWAP--WCGPCRMIHPIIDELSKQYVGKLKCYKVNTDE----SPSIATRYGIRSIPTVMIFKNGEKK 161 (181)
Q Consensus 95 ~~vlV~F~a~--wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~----~~~l~~~y~V~~~Ptl~i~~~G~~~ 161 (181)
++.+..|+.+ .|++|+...-.+.+..-+ +.+..+|... .+++.+..-...+|++.. +|..+
T Consensus 3 ~~~~~Ly~~~~~~s~~~~rv~~~l~e~gi~----~e~~~v~~~~~~~~~~~~~~~nP~g~VP~L~~--~~~~l 69 (214)
T PRK15113 3 KPAITLYSDAHFFSPYVMSAFVALQEKGLP----FELKTVDLDAGEHLQPTYQGYSLTRRVPTLQH--DDFEL 69 (214)
T ss_pred CCeEEEEeCCCCCCchHHHHHHHHHHcCCC----CeEEEeCCCCccccCHHHHhcCCCCCCCEEEE--CCEEE
Confidence 4566777765 599998887766665322 4455666532 245666556678999863 55544
No 349
>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=32.10 E-value=2.5e+02 Score=22.11 Aligned_cols=70 Identities=23% Similarity=0.414 Sum_probs=45.5
Q ss_pred EECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEeCCeEEEEEeCCCCHHHHHHHHH
Q 030222 101 FWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIE 178 (181)
Q Consensus 101 F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~y~V~~~Ptl~i~~~G~~~~~~~G~~~~~~l~~~i~ 178 (181)
|.-..|..|..+...+++- -+-++++ .++....+.++-+-+|-++|.+++ +|+.+ +.+..+.++++..|+
T Consensus 16 ~~HktC~ssy~Lf~~L~nk--gll~~Vk--ii~a~~p~f~~~~~~V~SvP~Vf~--DGel~--~~dpVdp~~ies~~~ 85 (265)
T COG5494 16 FTHKTCVSSYMLFEYLENK--GLLGKVK--IIDAELPPFLAFEKGVISVPSVFI--DGELV--YADPVDPEEIESILS 85 (265)
T ss_pred EEecchHHHHHHHHHHHhc--CCCCCce--EEEcCCChHHHhhcceeecceEEE--cCeEE--EcCCCCHHHHHHHHc
Confidence 4445688888776655441 1112343 456666777777889999999766 78876 446677777766553
No 350
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=31.95 E-value=96 Score=18.55 Aligned_cols=55 Identities=15% Similarity=0.033 Sum_probs=30.3
Q ss_pred EEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCC----CChHHHHHcCCCcccEEEEEeCCeE
Q 030222 100 EFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTD----ESPSIATRYGIRSIPTVMIFKNGEK 160 (181)
Q Consensus 100 ~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d----~~~~l~~~y~V~~~Ptl~i~~~G~~ 160 (181)
.|+...|+.|....-.+.+. +-.+....+|.. ..+++.+......+|++.. +|..
T Consensus 3 L~~~~~~~~~~~~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~--~~~~ 61 (73)
T cd03042 3 LYSYFRSSASYRVRIALNLK----GLDYEYVPVNLLKGEQLSPAYRALNPQGLVPTLVI--DGLV 61 (73)
T ss_pred EecCCCCcchHHHHHHHHHc----CCCCeEEEecCccCCcCChHHHHhCCCCCCCEEEE--CCEE
Confidence 34455666676664444443 223455556542 2345666666789998853 4544
No 351
>KOG0868 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=30.56 E-value=18 Score=27.68 Aligned_cols=66 Identities=17% Similarity=0.357 Sum_probs=39.4
Q ss_pred CCCcEEEEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEeCCeEE
Q 030222 93 SGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKK 161 (181)
Q Consensus 93 ~~~~vlV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~y~V~~~Ptl~i~~~G~~~ 161 (181)
.+|+++--+|.+.|..=.+++-.+..+--+|.. +.+++-.-..+.++-+-.-...+|++++ +|-.+
T Consensus 3 ~~KpiLYSYWrSSCswRVRiALaLK~iDYey~P-vnLlk~~~q~~~ef~~iNPm~kVP~L~i--~g~tl 68 (217)
T KOG0868|consen 3 AAKPILYSYWRSSCSWRVRIALALKGIDYEYKP-VNLLKEEDQSDSEFKEINPMEKVPTLVI--DGLTL 68 (217)
T ss_pred cccchhhhhhcccchHHHHHHHHHcCCCcceee-hhhhcchhhhhhHHhhcCchhhCCeEEE--CCEEe
Confidence 357888888999998877776666666545442 3333322111223333334678999987 56544
No 352
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=29.86 E-value=60 Score=19.70 Aligned_cols=56 Identities=13% Similarity=0.191 Sum_probs=30.8
Q ss_pred EEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCCCC--hHHHHHcCCCcccEEEEEeCCeEE
Q 030222 100 EFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDES--PSIATRYGIRSIPTVMIFKNGEKK 161 (181)
Q Consensus 100 ~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~--~~l~~~y~V~~~Ptl~i~~~G~~~ 161 (181)
.+|.+.|+.|+...-.+.+..-+ .....++..+. .++........+|++.. +|..+
T Consensus 3 Ly~~~~~~~~~~v~~~l~~~gi~----~e~~~~~~~~~~~~~~~~~~p~~~vP~L~~--~~~~l 60 (72)
T cd03039 3 LTYFNIRGRGEPIRLLLADAGVE----YEDVRITYEEWPELDLKPTLPFGQLPVLEI--DGKKL 60 (72)
T ss_pred EEEEcCcchHHHHHHHHHHCCCC----cEEEEeCHHHhhhhhhccCCcCCCCCEEEE--CCEEE
Confidence 35567788998777666554333 33344444322 22333345568998853 45443
No 353
>PF05679 CHGN: Chondroitin N-acetylgalactosaminyltransferase; InterPro: IPR008428 This family represents Chondroitin N-acetylgalactosaminyltransferase. Proteins have a type II transmembrane topology. The enzyme is involved in the biosynthetic initiation and elongation of chondroitin sulphate and is the key enzyme responsible for the selective chain assembly of chondroitin/dermatan sulphate on the linkage region tetrasaccharide common to various proteoglycans containing chondroitin/dermatan sulphate or heparin/heparan sulphate chains. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0032580 Golgi cisterna membrane
Probab=28.93 E-value=2.9e+02 Score=24.40 Aligned_cols=71 Identities=21% Similarity=0.452 Sum_probs=41.2
Q ss_pred hhhHHHhhCCC---cEEEEEECCC-ChhhhhhhhhHHHHHHHhcC-ceEEEEEe-CCCChHHHHHcCCCccc--EEEEE
Q 030222 85 TWQSLVLDSGS---PVLVEFWAPW-CGPCRMIHPIIDELSKQYVG-KLKCYKVN-TDESPSIATRYGIRSIP--TVMIF 155 (181)
Q Consensus 85 ~~~~~~~~~~~---~vlV~F~a~w-C~~C~~~~p~l~~la~~~~~-~v~~~~vd-~d~~~~l~~~y~V~~~P--tl~i~ 155 (181)
+|..+.+..++ .++|+|+.+- ...=..+...+.++.++|+. ++.++.+. ..-....+-+.|++..+ +|+++
T Consensus 269 ~~~~~~l~~~~~~~L~vV~~~~~~~~~~~~~ik~~l~~l~~k~~~~~i~~i~~~~~~fsr~~~Ld~g~~~~~~d~L~f~ 347 (499)
T PF05679_consen 269 NFEKVCLETDDNVFLTVVLFYDPSDSDSISQIKELLEELERKYPFSRIKWISVKTGEFSRGAALDVGAKKFPPDSLLFF 347 (499)
T ss_pred HHHHHhcccCCceEEEEEEecCcccchhHHHHHHHHHHHHHhCCccceEEEEecCCCccHHHHHHhhcccCCCCcEEEE
Confidence 56665544433 6888888733 22223345566777777753 46666666 44445556666777666 35555
No 354
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=28.19 E-value=1.7e+02 Score=25.38 Aligned_cols=29 Identities=21% Similarity=0.283 Sum_probs=22.9
Q ss_pred EEEEEECCCChhhhhhhhhHHHHHHHhcC
Q 030222 97 VLVEFWAPWCGPCRMIHPIIDELSKQYVG 125 (181)
Q Consensus 97 vlV~F~a~wC~~C~~~~p~l~~la~~~~~ 125 (181)
=+|+|++..-|.-+...|.++++.+++++
T Consensus 50 p~vWiHaaSVGEv~a~~pLv~~l~~~~P~ 78 (419)
T COG1519 50 PLVWIHAASVGEVLAALPLVRALRERFPD 78 (419)
T ss_pred CeEEEEecchhHHHHHHHHHHHHHHhCCC
Confidence 36678888888888888888888888765
No 355
>PF09499 RE_ApaLI: ApaLI-like restriction endonuclease; InterPro: IPR019036 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry includes R.ApaLI and R.XbaI restriction endonucleases. ApaLI recognises and cleaves the sequence GTGCAC.
Probab=27.53 E-value=1.3e+02 Score=22.81 Aligned_cols=45 Identities=18% Similarity=0.314 Sum_probs=34.6
Q ss_pred ccchhhHHHhhCC-CcEEEEEECCCChhhhhhhhhHHHHHHHhcCc
Q 030222 82 EDATWQSLVLDSG-SPVLVEFWAPWCGPCRMIHPIIDELSKQYVGK 126 (181)
Q Consensus 82 ~~~~~~~~~~~~~-~~vlV~F~a~wC~~C~~~~p~l~~la~~~~~~ 126 (181)
.+.++-..+...| +|+.|+||-|.-..-..+...|+.++....+.
T Consensus 130 kEhtrikvi~~aGy~PIrimf~~P~r~~~~~iq~~L~tlY~gvgG~ 175 (191)
T PF09499_consen 130 KEHTRIKVIKSAGYKPIRIMFYYPNREQAIRIQTTLKTLYNGVGGE 175 (191)
T ss_pred hHHHHHHHHHHCCCcceEEEEeCCCHHHHHHHHHHHHHHHHhcCce
Confidence 3555666565554 69999999998888888888888888877763
No 356
>PF07315 DUF1462: Protein of unknown function (DUF1462); InterPro: IPR009190 There are currently no experimental data for members of this group of bacterial proteins or their homologues. A crystal structure of Q7A6J8 from SWISSPROT revealed a thioredoxin-like fold, its core consisting of three layers alpha/beta/alpha.; PDB: 1XG8_A.
Probab=27.19 E-value=2e+02 Score=19.32 Aligned_cols=70 Identities=20% Similarity=0.350 Sum_probs=40.7
Q ss_pred CChhhhhh------hhhHH-HHHHHhcCc-eEEEEEeCCCCh------HHHHHc--CCCcccEEEEEeCCeEEEEEeCCC
Q 030222 105 WCGPCRMI------HPIID-ELSKQYVGK-LKCYKVNTDESP------SIATRY--GIRSIPTVMIFKNGEKKDTVIGAV 168 (181)
Q Consensus 105 wC~~C~~~------~p~l~-~la~~~~~~-v~~~~vd~d~~~------~l~~~y--~V~~~Ptl~i~~~G~~~~~~~G~~ 168 (181)
-|+.|..+ ...|+ .+.++|++. +.+-.||+.+.+ +++++. .---+|-+++ +|++++ .|..
T Consensus 8 ~CASCVn~PsSkeTyeWL~aal~RKyp~~~f~~~YiDi~~p~~~~~~~~~a~~I~ede~fYPlV~i--~~eiV~--EGnp 83 (93)
T PF07315_consen 8 ICASCVNAPSSKETYEWLEAALKRKYPDQPFEFTYIDIENPPENDHDQQFAERILEDELFYPLVVI--NDEIVA--EGNP 83 (93)
T ss_dssp --GGGSSS--HHHHHHHHHHHHHHH-TTS-EEEEEEETTT----HHHHHHHHHHHTTSS-SSEEEE--TTEEEE--ESS-
T ss_pred cchhhcCCCCchhHHHHHHHHHhCcCCCCceEEEEEecCCCCccHHHHHHHHHHHhcccccceEEE--CCEEEe--cCCc
Confidence 58888655 22332 245788864 888899987543 344333 3357898776 899886 4777
Q ss_pred CHHHHHHHHH
Q 030222 169 PKSTLTTSIE 178 (181)
Q Consensus 169 ~~~~l~~~i~ 178 (181)
..+.+.++|+
T Consensus 84 ~LK~I~~~~e 93 (93)
T PF07315_consen 84 QLKDIYEEME 93 (93)
T ss_dssp -HHHHHHHHH
T ss_pred cHHHHHHhhC
Confidence 7777777764
No 357
>COG2326 Uncharacterized conserved protein [Function unknown]
Probab=27.12 E-value=3.4e+02 Score=22.01 Aligned_cols=94 Identities=14% Similarity=0.201 Sum_probs=59.1
Q ss_pred cchhhHHHhhCCCcEEEEEECCCChhhhhhhhhHHHHHHHhcC-ceEEEEEeCCCChHHHHHc---CCCcccE---EEEE
Q 030222 83 DATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVG-KLKCYKVNTDESPSIATRY---GIRSIPT---VMIF 155 (181)
Q Consensus 83 ~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~d~~~~l~~~y---~V~~~Pt---l~i~ 155 (181)
....+..+...+..+|+.|-+-.-.. =-..+..+.+.++. .+.++.+-.-...+..+-| -+..+|+ +++|
T Consensus 61 l~klq~~~~~~~~~vvivfEGrDAAG---KgG~Ikri~~~lNPR~~rvval~aPt~~E~~qwY~qRy~~~lPa~GeiviF 137 (270)
T COG2326 61 LVKLQRWVAETGQRVVIVFEGRDAAG---KGGAIKRITEALNPRGARVVALPAPTDRERGQWYFQRYVAHLPAAGEIVIF 137 (270)
T ss_pred HHHHHHHHHhcCCeEEEEEecccccC---CCchhHHHhhhcCCceeEEeecCCCChHhhccHHHHHHHHhCCCCCeEEEe
Confidence 34455555667878888886533211 12356666666654 3666666554444444333 2677885 8888
Q ss_pred e----CCeEEEEEeCCCCHHHHHHHHHh
Q 030222 156 K----NGEKKDTVIGAVPKSTLTTSIEK 179 (181)
Q Consensus 156 ~----~G~~~~~~~G~~~~~~l~~~i~~ 179 (181)
+ |--.+.++.|+-+.++...++++
T Consensus 138 dRSwYnr~gVeRVmGfct~~q~~rfl~e 165 (270)
T COG2326 138 DRSWYNRAGVERVMGFCTPKQYKRFLRE 165 (270)
T ss_pred chhhccccCeeeccccCCHHHHHHHHHH
Confidence 4 55677899999999888887765
No 358
>PRK14449 acylphosphatase; Provisional
Probab=27.01 E-value=1.8e+02 Score=19.08 Aligned_cols=36 Identities=17% Similarity=0.206 Sum_probs=15.9
Q ss_pred HHHHHcCCCcccEEEEEeCCeEEEEEeCCCCHHHHHHHHH
Q 030222 139 SIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIE 178 (181)
Q Consensus 139 ~l~~~y~V~~~Ptl~i~~~G~~~~~~~G~~~~~~l~~~i~ 178 (181)
.++.++++.++ +.=..+|.+.-...| +.+.+.++++
T Consensus 24 ~~A~~lgl~G~--V~N~~dG~Vei~~~G--~~~~v~~f~~ 59 (90)
T PRK14449 24 QKAVSLGITGY--AENLYDGSVEVVAEG--DEENIKELIN 59 (90)
T ss_pred HHHHHcCCEEE--EEECCCCeEEEEEEe--CHHHHHHHHH
Confidence 34555555554 122235544444444 3344444443
No 359
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=26.57 E-value=1.1e+02 Score=22.68 Aligned_cols=25 Identities=8% Similarity=0.058 Sum_probs=22.8
Q ss_pred EEECCCChhhhhhhhhHHHHHHHhc
Q 030222 100 EFWAPWCGPCRMIHPIIDELSKQYV 124 (181)
Q Consensus 100 ~F~a~wC~~C~~~~p~l~~la~~~~ 124 (181)
+|+..-||.|-...+.+.++.++++
T Consensus 3 ~~~D~~cP~cyl~~~~l~~~~~~~~ 27 (201)
T cd03024 3 IWSDVVCPWCYIGKRRLEKALAELG 27 (201)
T ss_pred EEecCcCccHHHHHHHHHHHHHhCC
Confidence 5788899999999999999999995
No 360
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=26.55 E-value=1.4e+02 Score=18.06 Aligned_cols=51 Identities=10% Similarity=0.059 Sum_probs=31.5
Q ss_pred EEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCC----CChHHHHHcCCCcccEEEE
Q 030222 100 EFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTD----ESPSIATRYGIRSIPTVMI 154 (181)
Q Consensus 100 ~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d----~~~~l~~~y~V~~~Ptl~i 154 (181)
.++.++++.|....-.+++..-+ ..+..++.. ..+++.+......+|++..
T Consensus 3 l~~~~~s~~~~~v~~~L~~~~l~----~~~~~~~~~~~~~~~~~~~~~nP~~~vP~L~~ 57 (73)
T cd03047 3 IWGRRSSINVQKVLWLLDELGLP----YERIDAGGQFGGLDTPEFLAMNPNGRVPVLED 57 (73)
T ss_pred EEecCCCcchHHHHHHHHHcCCC----CEEEEeccccccccCHHHHhhCCCCCCCEEEE
Confidence 46677788888887766665333 334444432 2345566666778999843
No 361
>PF03227 GILT: Gamma interferon inducible lysosomal thiol reductase (GILT); InterPro: IPR004911 This family includes the two characterised human gamma-interferon-inducible lysosomal thiol reductase (GILT) sequences [, ]. It also contains several other eukaryotic putative proteins with similarity to GILT []. The aligned region contains three conserved cysteine residues. In addition, the two GILT sequences possess a C-X(2)-C motif that is shared by some of the other sequences in the family. This motif is thought to be associated with disulphide bond reduction.
Probab=26.45 E-value=1.3e+02 Score=20.37 Aligned_cols=29 Identities=10% Similarity=0.277 Sum_probs=19.0
Q ss_pred EEEEECCCChhhhhhh-hhHHHH--HHHhcCc
Q 030222 98 LVEFWAPWCGPCRMIH-PIIDEL--SKQYVGK 126 (181)
Q Consensus 98 lV~F~a~wC~~C~~~~-p~l~~l--a~~~~~~ 126 (181)
|-.||-+-||.|+.+. ..|..+ .+++.+.
T Consensus 3 v~vyyESlCPd~~~fi~~~L~p~~~~~~~~~~ 34 (108)
T PF03227_consen 3 VEVYYESLCPDCRRFITNQLFPVWTYEKLSDI 34 (108)
T ss_pred EEEEEEecCHhHHHHHHHHHHHHHHHhhccce
Confidence 5568999999999873 345542 3455543
No 362
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=26.34 E-value=1.7e+02 Score=22.69 Aligned_cols=38 Identities=18% Similarity=0.143 Sum_probs=25.7
Q ss_pred cEEEEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCCCC
Q 030222 96 PVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDES 137 (181)
Q Consensus 96 ~vlV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~ 137 (181)
--+.+|-.+.|+.|......+.. -...+.++.|+.+.+
T Consensus 110 ~rlalFvkd~C~~C~~~~~~l~a----~~~~~Diylvgs~~d 147 (200)
T TIGR03759 110 GRLALFVKDDCVACDARVQRLLA----DNAPLDLYLVGSQGD 147 (200)
T ss_pred CeEEEEeCCCChHHHHHHHHHhc----CCCceeEEEecCCCC
Confidence 34566777999999988776622 123588888884433
No 363
>PF02591 DUF164: Putative zinc ribbon domain; InterPro: IPR003743 This entry describes proteins of unknown function.
Probab=26.19 E-value=68 Score=18.98 Aligned_cols=35 Identities=20% Similarity=0.405 Sum_probs=26.6
Q ss_pred hhhHHHhhCCCcEEEEEECCCChhhhhhhh--hHHHH
Q 030222 85 TWQSLVLDSGSPVLVEFWAPWCGPCRMIHP--IIDEL 119 (181)
Q Consensus 85 ~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p--~l~~l 119 (181)
.|+.+....+...++.....-|..|....| .+.++
T Consensus 4 ~Y~rl~~~~~g~~va~v~~~~C~gC~~~l~~~~~~~i 40 (56)
T PF02591_consen 4 EYERLRKRKGGVAVARVEGGTCSGCHMELPPQELNEI 40 (56)
T ss_pred HHHHHHhhcCCcEEEEeeCCccCCCCEEcCHHHHHHH
Confidence 466666555778999999999999999877 33444
No 364
>PF10262 Rdx: Rdx family; InterPro: IPR011893 This entry represents the Rdx family of selenoproteins, which includes mammalian selenoproteins SelW, SelV, SelT and SelH, bacterial SelW-like proteins and cysteine-containing proteins of unknown function in all three domains of life. Mammalian Rdx12 and its fish selenoprotein orthologues are also members of this family []. These proteins possess a thioredoxin-like fold and a conserved CXXC or CxxU (U is selenocysteine) motif near the N terminus, suggesting a redox function. Rdx proteins can use catalytic cysteine (or selenocysteine) to form transient mixed disulphides with substrate proteins. Selenium (Se) plays an essential role in cell survival and most of the effects of Se are probably mediated by selenoproteins. Selenoprotein W (SelW) plays an important role in protection of neurons from oxidative stress during neuronal development [], []. Selenoprotein T (SelT) is conserved from plants to humans. SelT is localized to the endoplasmic reticulum through a hydrophobic domain. The protein binds to UDP-glucose:glycoprotein glucosyltransferase (UGTR), the endoplasmic reticulum (ER)-resident protein, which is known to be involved in the quality control of protein folding [, ]. The function of SelT is unknown, although it may have a role in PACAP signaling during PC12 cell differentiation [, ]. Selenoprotein H (SelH) protects neurons against UVB-induced damage by inhibiting apoptotic cell death pathways, by preventing mitochondrial depolarization, and by promoting cell survival pathways [].; GO: 0008430 selenium binding, 0045454 cell redox homeostasis; PDB: 2OJL_B 2FA8_A 2P0G_C 2NPB_A 3DEX_C 2OKA_A 2OBK_G.
Probab=25.90 E-value=1.8e+02 Score=18.30 Aligned_cols=62 Identities=15% Similarity=0.108 Sum_probs=35.3
Q ss_pred ChhhhhhhhhHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEeCCeEEEEE---eCCCCHHHHHHHHHh
Q 030222 106 CGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTV---IGAVPKSTLTTSIEK 179 (181)
Q Consensus 106 C~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~y~V~~~Ptl~i~~~G~~~~~~---~G~~~~~~l~~~i~~ 179 (181)
|++=....-.-+++...|++++.-+... ....-+|-+.-+|+.+..- .|+.+.+++.+.|++
T Consensus 11 C~~~~~a~~l~~~l~~~fp~~~~~v~~~------------~~~~G~FEV~v~g~lI~SK~~~g~fP~~~~i~~~I~~ 75 (76)
T PF10262_consen 11 CGYRPRALELAQELLQTFPDRIAEVELS------------PGSTGAFEVTVNGELIFSKLESGRFPDPDEIVQLIRD 75 (76)
T ss_dssp TTCHHHHHHHHHHHHHHSTTTCSEEEEE------------EESTT-EEEEETTEEEEEHHHHTSSS-HHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCcceEEEEE------------eccCCEEEEEEccEEEEEehhcCCCCCHHHHHHHHhc
Confidence 4444455555566777888643222221 0112247777889988732 267788888888875
No 365
>PF11211 DUF2997: Protein of unknown function (DUF2997); InterPro: IPR021375 This family of proteins has no known function.
Probab=25.81 E-value=1.5e+02 Score=17.29 Aligned_cols=30 Identities=23% Similarity=0.316 Sum_probs=20.4
Q ss_pred EEEEeCCeEEEEEeCCCC--HHHHHHHHHhhC
Q 030222 152 VMIFKNGEKKDTVIGAVP--KSTLTTSIEKFL 181 (181)
Q Consensus 152 l~i~~~G~~~~~~~G~~~--~~~l~~~i~~~L 181 (181)
|.+..+|++.....|... -.++.+.|++.|
T Consensus 3 ~~I~~dG~V~~~v~G~~G~~C~~~t~~lE~~L 34 (48)
T PF11211_consen 3 FTIYPDGRVEEEVEGFKGSSCLEATAALEEAL 34 (48)
T ss_pred EEECCCcEEEEEEEeccChhHHHHHHHHHHHh
Confidence 556789999888888644 345666666554
No 366
>PRK10853 putative reductase; Provisional
Probab=25.58 E-value=69 Score=22.32 Aligned_cols=22 Identities=5% Similarity=0.123 Sum_probs=18.0
Q ss_pred EEEEECCCChhhhhhhhhHHHH
Q 030222 98 LVEFWAPWCGPCRMIHPIIDEL 119 (181)
Q Consensus 98 lV~F~a~wC~~C~~~~p~l~~l 119 (181)
+..|+-+.|..|+.....|++-
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~~ 23 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEAQ 23 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHHc
Confidence 4578899999999998777653
No 367
>PRK09864 putative peptidase; Provisional
Probab=25.06 E-value=4.2e+02 Score=22.35 Aligned_cols=82 Identities=10% Similarity=0.031 Sum_probs=50.5
Q ss_pred CCcEEEEEECCCChhhhhhhhhHHHHHHHhcCceEEEEEe-CCCChHHHHHcCCCcccEEEEEeCCeEEEEEeCCCCHHH
Q 030222 94 GSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVN-TDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKST 172 (181)
Q Consensus 94 ~~~vlV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd-~d~~~~l~~~y~V~~~Ptl~i~~~G~~~~~~~G~~~~~~ 172 (181)
+.|++ .++....-.-+.+...+.++|++.+-.++.-... .-.+.... ++.-.++||..+--.-+-++...+..+.++
T Consensus 249 ~Gp~i-~~~D~~~i~~~~l~~~l~~~A~~~~Ip~Q~~~~~~ggTDa~~i-~~~~~Gvpt~~isiP~RY~Hs~~e~~~~~D 326 (356)
T PRK09864 249 QGPGL-MLFDKRYFPNQKLVAALKSCAAHNDLPLQFSTMKTGATDGGRY-NVMGGGRPVVALCLPTRYLHANSGMISKAD 326 (356)
T ss_pred CCCeE-EEccCCccCCHHHHHHHHHHHHHcCCCceEEEcCCCCchHHHH-HHhCCCCcEEEEeeccCcCCCcceEeEHHH
Confidence 34555 4667777788889999999999987555543222 12222222 344568999877755555555555556555
Q ss_pred HHHHH
Q 030222 173 LTTSI 177 (181)
Q Consensus 173 l~~~i 177 (181)
+.+.+
T Consensus 327 ~e~~~ 331 (356)
T PRK09864 327 YDALL 331 (356)
T ss_pred HHHHH
Confidence 55544
No 368
>PF10865 DUF2703: Domain of unknown function (DUF2703); InterPro: IPR021219 This family of protein has no known function.
Probab=24.90 E-value=1.3e+02 Score=21.15 Aligned_cols=54 Identities=22% Similarity=0.345 Sum_probs=35.9
Q ss_pred CCChhhhhhhhhHHHHHHHh----cC---ceEEEEEeCCCChHHHHHcCCCcccEEEEEeCCeEEE
Q 030222 104 PWCGPCRMIHPIIDELSKQY----VG---KLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKD 162 (181)
Q Consensus 104 ~wC~~C~~~~p~l~~la~~~----~~---~v~~~~vd~d~~~~l~~~y~V~~~Ptl~i~~~G~~~~ 162 (181)
..|..|..-...+.++.+++ .. .+.+-++..+.. +++.+| -.-|++.+ ||..+.
T Consensus 13 ~tC~RC~~Tg~~L~~av~~l~~~L~~~Giev~l~~~~l~~~-~~~~~~--~~S~~I~i--nG~piE 73 (120)
T PF10865_consen 13 KTCERCGDTGETLREAVKELAPVLAPLGIEVRLEEIELDEE-EFARQP--LESPTIRI--NGRPIE 73 (120)
T ss_pred CcCCchhhHHHHHHHHHHHHHHHHHhCCcEEEEEEEECChH-HHhhcc--cCCCeeeE--CCEehh
Confidence 37999988777666655543 32 366777777654 677777 66677766 676664
No 369
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=24.76 E-value=90 Score=22.07 Aligned_cols=23 Identities=9% Similarity=0.182 Sum_probs=18.5
Q ss_pred EEEEEECCCChhhhhhhhhHHHH
Q 030222 97 VLVEFWAPWCGPCRMIHPIIDEL 119 (181)
Q Consensus 97 vlV~F~a~wC~~C~~~~p~l~~l 119 (181)
.+..|+-+.|..|+.....|++-
T Consensus 2 ~i~iY~~p~Cst~RKA~~~L~~~ 24 (126)
T TIGR01616 2 TIIFYEKPGCANNARQKAALKAS 24 (126)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHC
Confidence 35678889999999998877664
No 370
>COG0295 Cdd Cytidine deaminase [Nucleotide transport and metabolism]
Probab=24.22 E-value=95 Score=22.40 Aligned_cols=9 Identities=44% Similarity=1.102 Sum_probs=5.1
Q ss_pred CChhhhhhh
Q 030222 105 WCGPCRMIH 113 (181)
Q Consensus 105 wC~~C~~~~ 113 (181)
=|+.|+.++
T Consensus 87 PCG~CRQ~i 95 (134)
T COG0295 87 PCGACRQVL 95 (134)
T ss_pred CcHHHHHHH
Confidence 366666554
No 371
>KOG2990 consensus C2C2-type Zn-finger protein [Function unknown]
Probab=24.05 E-value=50 Score=26.96 Aligned_cols=21 Identities=19% Similarity=0.672 Sum_probs=16.0
Q ss_pred CCcEEEEE---ECCCChhhhhhhh
Q 030222 94 GSPVLVEF---WAPWCGPCRMIHP 114 (181)
Q Consensus 94 ~~~vlV~F---~a~wC~~C~~~~p 114 (181)
....||-| |.-||..|+....
T Consensus 40 ~gilvIRFEMPynIWC~gC~nhIg 63 (317)
T KOG2990|consen 40 QGILVIRFEMPYNIWCDGCKNHIG 63 (317)
T ss_pred cceEEEEEecccchhhccHHHhhh
Confidence 34677788 6789999998754
No 372
>COG2093 DNA-directed RNA polymerase, subunit E'' [Transcription]
Probab=23.96 E-value=50 Score=20.54 Aligned_cols=28 Identities=25% Similarity=0.560 Sum_probs=16.3
Q ss_pred HHHHHhcCceEEEEEeCCCChHHHHHcCCCc
Q 030222 118 ELSKQYVGKLKCYKVNTDESPSIATRYGIRS 148 (181)
Q Consensus 118 ~la~~~~~~v~~~~vd~d~~~~l~~~y~V~~ 148 (181)
++.+++.+ -++.+|.+ ..+|++++||.-
T Consensus 28 ~~te~W~G--~~iIidpe-~SeIAkrlgi~~ 55 (64)
T COG2093 28 DLTEEWFG--LLIIIDPE-KSEIAKRLGIKI 55 (64)
T ss_pred ccchhhcc--EEEEEcCc-HHHHHHHhCCCC
Confidence 35556655 22333433 348999999863
No 373
>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=23.54 E-value=55 Score=29.72 Aligned_cols=15 Identities=20% Similarity=0.375 Sum_probs=8.9
Q ss_pred Ccccccccccccccc
Q 030222 1 MATVLECVAVPRASA 15 (181)
Q Consensus 1 ~~~~~~~~~~~~~~~ 15 (181)
|++.++..++.++++
T Consensus 1 mss~l~~s~~sss~s 15 (1103)
T KOG1420|consen 1 MSSSLDASSSSSSSS 15 (1103)
T ss_pred CCccccccccccccc
Confidence 677777666444443
No 374
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=23.53 E-value=1.7e+02 Score=22.11 Aligned_cols=36 Identities=3% Similarity=0.025 Sum_probs=27.0
Q ss_pred EEEEEECCCChhhhhhhhhHHHHHHHhcCceEEEEE
Q 030222 97 VLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKV 132 (181)
Q Consensus 97 vlV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~v 132 (181)
.+-+||..-||.|---...++++++.++-.+...-+
T Consensus 2 ~Id~~~D~vcPwcylg~~~l~~~~~~~~v~i~~~P~ 37 (209)
T cd03021 2 KIELYYDVVSPYSYLAFEVLCRYQTAWNVDITYVPV 37 (209)
T ss_pred ceEEEEeCCChHHHHHHHHHHHHHHHhCCeEEEEee
Confidence 455678889999999999999988876544444333
No 375
>PRK10026 arsenate reductase; Provisional
Probab=23.20 E-value=90 Score=22.64 Aligned_cols=22 Identities=23% Similarity=0.469 Sum_probs=18.2
Q ss_pred EEEEECCCChhhhhhhhhHHHH
Q 030222 98 LVEFWAPWCGPCRMIHPIIDEL 119 (181)
Q Consensus 98 lV~F~a~wC~~C~~~~p~l~~l 119 (181)
+..|+-+.|..|+.....|++.
T Consensus 4 i~iY~~p~Cst~RKA~~wL~~~ 25 (141)
T PRK10026 4 ITIYHNPACGTSRNTLEMIRNS 25 (141)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC
Confidence 5678899999999998777664
No 376
>PF02484 Rhabdo_NV: Rhabdovirus Non-virion protein; InterPro: IPR003490 Infectious hematopoietic necrosis virus (IHNV) is a member of the family Rhabdoviridae. The non-virion protein (NV) is coded for by one of the six genes of the IHNV genome [], but is absent in vesiculovirus-like rhabdovirus [].
Probab=22.92 E-value=89 Score=20.93 Aligned_cols=38 Identities=13% Similarity=0.115 Sum_probs=27.3
Q ss_pred HHcCCCcccEEEEEeCCeEEEEEeCCCCHHHHHHHHHh
Q 030222 142 TRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEK 179 (181)
Q Consensus 142 ~~y~V~~~Ptl~i~~~G~~~~~~~G~~~~~~l~~~i~~ 179 (181)
-+|.+..--.=++|++|+++.+..|.-.+..|-..+..
T Consensus 17 lryk~~va~hgflfddg~~vw~e~~d~~w~rl~~vv~a 54 (111)
T PF02484_consen 17 LRYKNEVARHGFLFDDGDIVWSEDDDETWNRLCDVVNA 54 (111)
T ss_pred HHHHhhccccceEecCCcEEEecCChHHHHHHHHHHHH
Confidence 46666666666788999999988887666666555543
No 377
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=22.72 E-value=67 Score=28.91 Aligned_cols=53 Identities=15% Similarity=0.250 Sum_probs=35.9
Q ss_pred EEEEEeCCCChHHHHHcCCCcccEEEEEeCCeEEEEEeCCCCHHHHHHHHHhhC
Q 030222 128 KCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 181 (181)
Q Consensus 128 ~~~~vd~d~~~~l~~~y~V~~~Ptl~i~~~G~~~~~~~G~~~~~~l~~~i~~~L 181 (181)
.+..+-.+++..+.. +++...|+.++|+||+.........+.+...+.|+++|
T Consensus 217 ~vr~~~d~q~~~~~~-l~~~~~~~~llfrnG~~q~l~~~~~s~~~y~~~I~~~l 269 (606)
T KOG1731|consen 217 GVRARLDTQNFPLFG-LKPDNFPLALLFRNGEQQPLWPSSSSRSAYVKKIDDLL 269 (606)
T ss_pred ceEEEecchhccccc-cCCCCchhhhhhcCCcccccccccccHHHHHHHHHHHh
Confidence 333333333334455 89999999999999998876665566666777776654
No 378
>PRK14420 acylphosphatase; Provisional
Probab=22.67 E-value=2.3e+02 Score=18.51 Aligned_cols=37 Identities=11% Similarity=0.058 Sum_probs=19.8
Q ss_pred HHHHHcCCCcccEEEEEeCCeEEEEEeCCCCHHHHHHHHHh
Q 030222 139 SIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEK 179 (181)
Q Consensus 139 ~l~~~y~V~~~Ptl~i~~~G~~~~~~~G~~~~~~l~~~i~~ 179 (181)
.++.++|+.++- .=..+|.+.....|. .+.|.++++.
T Consensus 23 ~~A~~~gl~G~V--~N~~dG~Vei~~qG~--~~~i~~f~~~ 59 (91)
T PRK14420 23 MEADKRKLTGWV--KNRDDGTVEIEAEGP--EEALQLFLDA 59 (91)
T ss_pred HHHHHcCCEEEE--EECCCCcEEEEEEEC--HHHHHHHHHH
Confidence 456667766651 112466555556663 4555555554
No 379
>PF10405 BHD_3: Rad4 beta-hairpin domain 3; InterPro: IPR018328 Mutations in the nucleotide excision repair (NER) pathway can cause the xeroderma pigmentosum skin cancer predisposition syndrome. NER lesions are limited to one DNA strand, but otherwise they are chemically and structurally diverse, being caused by a wide variety of genotoxic chemicals and ultraviolet radiation. The xeroderma pigmentosum C (XPC) protein has a central role in initiating global-genome NER by recognising the lesion and recruiting downstream factors. In NER in eukaryotes, DNA is incised on both sides of the lesion, resulting in the removal of a fragment ~25-30 nucleotides long. This is followed by repair synthesis and ligation. This reaction, in yeast, requires the damage binding factors Rad14, RPA, and the Rad4-Rad23 complex, the transcription factor TFIIH which contains the two DNA helicases Rad3 and Rad25, essential for creating a bubble structure, and the two endonucleases, the Rad1-Rad10 complex and Rad2, which incise the damaged DNA strand on the 5'- and 3'-side of the lesion, respectively []. The crystal structure of the yeast XPC orthologue Rad4 bound to DNA containing a cyclobutane pyrimidine dimer lesion has been determined. The structure shows that Rad4 inserts a beta-hairpin through the DNA duplex, causing the two damaged base pairs to flip out of the double helix. The expelled nucleotides of the undamaged strand are recognised by Rad4, whereas the two cyclobutane pyrimidine dimer-linked nucleotides become disordered. This indicates that the lesions recognised by Rad4/XPC thermodynamically destabilise the double helix in a manner that facilitates the flipping-out of two base pairs []. Homologues of all the above mentioned yeast genes, except for RAD7, RAD16, and MMS19, have been identified in humans, and mutations in these human genes affect NER in a similar fashion as they do in yeast, with the exception of XPC, the human counterpart of yeast RAD4. Deletion of RAD4 causes the same high level of UV sensitivity as do mutations in the other class 1 genes, and rad4 mutants are completely defective in incision. By contrast, XPC is required for the repair of nontranscribed regions of the genome but not for the repair of the transcribed DNA strand. This entry represents the DNA-binding domain of Rad4, which has a beta-hairpin structure []. Rad4 inserts a beta-hairpin through the DNA duplex, causing the two damaged base pairs to flip out of the double helix. ; GO: 0003684 damaged DNA binding, 0006289 nucleotide-excision repair, 0005634 nucleus; PDB: 2QSG_A 2QSF_A 2QSH_A.
Probab=22.29 E-value=1.7e+02 Score=18.79 Aligned_cols=49 Identities=20% Similarity=0.314 Sum_probs=28.5
Q ss_pred EEEeCCCChHHHHHcCCCcccEEEEE---eCCeEEEEEeCCCCHHHHHHHHH
Q 030222 130 YKVNTDESPSIATRYGIRSIPTVMIF---KNGEKKDTVIGAVPKSTLTTSIE 178 (181)
Q Consensus 130 ~~vd~d~~~~l~~~y~V~~~Ptl~i~---~~G~~~~~~~G~~~~~~l~~~i~ 178 (181)
+.+.......++++++|...|.+.=| ++|.....+.|..=.++..+.|.
T Consensus 22 vhi~~~~~~~~a~~l~Idya~AV~GF~f~~~g~~~Pv~~GiVV~~e~~~~v~ 73 (76)
T PF10405_consen 22 VHIKLPGIEKVAKKLGIDYAPAVVGFDFQKGGRAVPVIDGIVVAEEDEEAVQ 73 (76)
T ss_dssp EEEE-TTHHHHHHHTT---EEEEEEEEE-STT-EEEEEEEEEEEGGGHHHHH
T ss_pred EEEecccHHHHHHHcCCcEEeeecceeEccCCCCeEEECeEEEEhhHHHHHH
Confidence 44455556678899999999987766 36677777777644444444443
No 380
>cd02979 PHOX_C FAD-dependent Phenol hydoxylase (PHOX) family, C-terminal TRX-fold domain; composed of proteins similar to PHOX from the aerobic topsoil yeast Trichosporon cutaneum. PHOX is a flavoprotein monooxygenase that catalyzes the hydroxylation of phenol and simple phenol derivatives in the ortho position with the consumption of NADPH and oxygen. This is the first step in the biodegradation and detoxification of phenolic compounds. PHOX contains three domains. The substrate and FAD/NAD(P) binding sites are contained in the first two domains, which adopt a complicated folding pattern. The third or C-terminal domain contains a TRX fold and is involved in dimerization. The functional unit of PHOX is a dimer, although active tetramers of the recombinant enzyme can be isolated when overproduced in bacteria.
Probab=22.08 E-value=3.3e+02 Score=20.05 Aligned_cols=42 Identities=14% Similarity=0.112 Sum_probs=32.0
Q ss_pred hHHHHHcCCC-cccEEEEEeCCeEEEEEeCCCCHHHHHHHHHh
Q 030222 138 PSIATRYGIR-SIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEK 179 (181)
Q Consensus 138 ~~l~~~y~V~-~~Ptl~i~~~G~~~~~~~G~~~~~~l~~~i~~ 179 (181)
...-++|||. .-+.+++.+....+..+...-..+.|.+++++
T Consensus 124 ~~~~~~~gv~~~~g~vvvvRPDgyVg~~~~~~~~~~l~~yf~~ 166 (167)
T cd02979 124 GDAYEKYGIDPERGAVVVVRPDQYVALVGPLDDVEALEAYFAG 166 (167)
T ss_pred ccHHHhhCCCCCCCCEEEECCCCeEEEEeccccHHHHHHHHhh
Confidence 5688999997 56789999877777766666666778877764
No 381
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=22.01 E-value=1.3e+02 Score=20.32 Aligned_cols=31 Identities=16% Similarity=0.370 Sum_probs=19.9
Q ss_pred EECCCChhhhhhhhhHHHHHHHhcCceEEEEEeCCCC
Q 030222 101 FWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDES 137 (181)
Q Consensus 101 F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~ 137 (181)
|+-+.|..|+.....+++- ++.+-.+|.-++
T Consensus 1 Y~~~~C~t~rka~~~L~~~------gi~~~~~d~~k~ 31 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEEN------GIEYEFIDYKKE 31 (110)
T ss_dssp EE-TT-HHHHHHHHHHHHT------T--EEEEETTTS
T ss_pred CcCCCCHHHHHHHHHHHHc------CCCeEeehhhhC
Confidence 5778999999999777662 356667777654
No 382
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.65 E-value=1.1e+02 Score=22.75 Aligned_cols=43 Identities=16% Similarity=0.222 Sum_probs=32.5
Q ss_pred cchhhHHHhh--CCCcEEEEEECCCChhhhhhhhhHHHHHHHhcC
Q 030222 83 DATWQSLVLD--SGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVG 125 (181)
Q Consensus 83 ~~~~~~~~~~--~~~~vlV~F~a~wC~~C~~~~p~l~~la~~~~~ 125 (181)
.+.|.++.+. .....+|..|.-.|.+.-...|.|-+-.++|..
T Consensus 66 qerfrsitqsyyrsahalilvydiscqpsfdclpewlreie~yan 110 (213)
T KOG0095|consen 66 QERFRSITQSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYAN 110 (213)
T ss_pred hHHHHHHHHHHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhh
Confidence 4556665443 245788889999999999999998777788875
No 383
>cd03062 TRX_Fd_Sucrase TRX-like [2Fe-2S] Ferredoxin (Fd) family, Sucrase subfamily; composed of proteins with similarity to a novel plant enzyme, isolated from potato, which contains a Fd-like domain and exhibits sucrolytic activity. The putative active site of the Fd-like domain of the enzyme contains two cysteines and two histidines for possible binding to iron-sulfur clusters, compared to four cysteines present in the active site of Fd.
Probab=21.47 E-value=1.6e+02 Score=19.54 Aligned_cols=65 Identities=20% Similarity=0.489 Sum_probs=36.1
Q ss_pred CCChhhhhhhhhHHHHHHHhcC----ceEEEEEeCCCChHHHHHcC-CCcccEEEEEeCCeEEEEEeCCCCHHHHHHHHH
Q 030222 104 PWCGPCRMIHPIIDELSKQYVG----KLKCYKVNTDESPSIATRYG-IRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIE 178 (181)
Q Consensus 104 ~wC~~C~~~~p~l~~la~~~~~----~v~~~~vd~d~~~~l~~~y~-V~~~Ptl~i~~~G~~~~~~~G~~~~~~l~~~i~ 178 (181)
.-|..+- .+.++++.+++.. .+.+....+ +| =+.=|+++++.+++ ..+-|..+.+++...|+
T Consensus 14 ~~C~~~g--~~l~~~l~~~l~~~~~~~v~v~~~~c---------lG~c~~gp~vvvyP~~~--g~wy~~v~p~~v~~Iv~ 80 (97)
T cd03062 14 KRCGICG--PPLAAELRAELPEHGPGGVRVWEVSH---------VGGHKFAGNVIIYPKGD--GIWYGRVTPEHVPPIVD 80 (97)
T ss_pred cChhhcC--HHHHHHHHHHHHHhCCCceEEEeCCc---------CCccCcCCEEEEEeCCC--eeEEeecCHHHHHHHHH
Confidence 3455443 3456666666542 233333322 22 23458999997321 23445678888888887
Q ss_pred hhC
Q 030222 179 KFL 181 (181)
Q Consensus 179 ~~L 181 (181)
+.+
T Consensus 81 ~hl 83 (97)
T cd03062 81 RLI 83 (97)
T ss_pred HHh
Confidence 653
No 384
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=20.97 E-value=68 Score=20.56 Aligned_cols=19 Identities=21% Similarity=0.520 Sum_probs=13.9
Q ss_pred cCCCccc--EEEEEeCCeEEE
Q 030222 144 YGIRSIP--TVMIFKNGEKKD 162 (181)
Q Consensus 144 y~V~~~P--tl~i~~~G~~~~ 162 (181)
+.|.+.| ++.+|++|+.+.
T Consensus 5 ~~v~G~P~Pti~W~kng~~l~ 25 (79)
T cd05855 5 FTVKGNPKPTLQWFHEGAILN 25 (79)
T ss_pred EEEeEeCCCceEEEECCEECC
Confidence 3455555 799999998774
No 385
>PRK11752 putative S-transferase; Provisional
Probab=20.63 E-value=3.5e+02 Score=21.34 Aligned_cols=55 Identities=13% Similarity=0.183 Sum_probs=35.8
Q ss_pred EECCCChhhhhhhhhHHHH-HHHhcC-ceEEEEEeCCC----ChHHHHHcCCCcccEEEEE
Q 030222 101 FWAPWCGPCRMIHPIIDEL-SKQYVG-KLKCYKVNTDE----SPSIATRYGIRSIPTVMIF 155 (181)
Q Consensus 101 F~a~wC~~C~~~~p~l~~l-a~~~~~-~v~~~~vd~d~----~~~l~~~y~V~~~Ptl~i~ 155 (181)
+|..+++.|+...-.++++ +...++ .+....||... .+++.+..-...+|+++..
T Consensus 47 Ly~~~s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~~~~~~e~~~iNP~GkVP~Lv~~ 107 (264)
T PRK11752 47 LYSLGTPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEGDQFSSGFVEINPNSKIPALLDR 107 (264)
T ss_pred EecCCCCchHHHHHHHHHHHhccCCCCceEEEEecCccccccCHHHHhhCCCCCCCEEEeC
Confidence 3345699999999888874 333322 35566666533 3466666667789999754
No 386
>TIGR03521 GldG gliding-associated putative ABC transporter substrate-binding component GldG. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldG is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldG abolish the gliding phenotype. GldG, along with GldA and GldF are believed to compose an ABC transporter and are observed as an operon. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=20.13 E-value=6.3e+02 Score=22.57 Aligned_cols=77 Identities=18% Similarity=0.218 Sum_probs=43.1
Q ss_pred cccceeeeccchhhHHHhhCCCcEEEEEECCCC-h-hhhhhhhhHHHHHHHh---cCceEEEEEeCCCChHH--------
Q 030222 74 CEAQETAVEDATWQSLVLDSGSPVLVEFWAPWC-G-PCRMIHPIIDELSKQY---VGKLKCYKVNTDESPSI-------- 140 (181)
Q Consensus 74 ~~~~~~~l~~~~~~~~~~~~~~~vlV~F~a~wC-~-~C~~~~p~l~~la~~~---~~~v~~~~vd~d~~~~l-------- 140 (181)
.....+.+.+.+-+- +..=+++|-|.+|.+.- + .-......+.++.++| .+++++-.+|-+.+++.
T Consensus 28 T~~k~ytLS~~T~~~-L~~L~~pV~I~~~~s~~~~~~~~~~~~~v~~lL~eY~~~s~~i~~~~iDP~~~~~~e~~~~~~~ 106 (552)
T TIGR03521 28 TEDKRYTLSPASKEV-VKKLDDPVSIDIFLDGELPADFRRLQKETRQLLEEFAAYNPNIKFRFVNPLEEEDEQGEEILDS 106 (552)
T ss_pred CCCCceecCHHHHHH-HHhCCCCEEEEEEEcCCCchHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCcchhhhhHHHHH
Confidence 345566676666543 33336677776665432 1 1223333444444444 33588999998776433
Q ss_pred HHHcCCCcccE
Q 030222 141 ATRYGIRSIPT 151 (181)
Q Consensus 141 ~~~y~V~~~Pt 151 (181)
+.+|||...+.
T Consensus 107 ~~~~gi~~~~~ 117 (552)
T TIGR03521 107 LAQYGIKPANV 117 (552)
T ss_pred HHHcCCCccee
Confidence 34588886663
Done!