BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030225
(181 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 233 bits (594), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 106/159 (66%), Positives = 128/159 (80%)
Query: 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPM 60
+G GK+SLVLRFVK QF +FQESTIGAAFF+Q L++N+ T+KF+IWDTAGQERYHSLAPM
Sbjct: 21 VGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPM 80
Query: 61 YYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEG 120
YYRG +D+T+ SFERAKKWVQELQ QGNPN++M L NK DL + RKV E+
Sbjct: 81 YYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDA 140
Query: 121 ELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVNPS 159
+ YAQENGL F+ETSAK+A NV E+FYEIA+RL V P+
Sbjct: 141 QTYAQENGLFFMETSAKTATNVKEIFYEIARRLPRVQPT 179
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 210 bits (535), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 95/152 (62%), Positives = 118/152 (77%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
GK+SLVLRFVKGQF ++QESTIGAAF TQ + L++ T+KF+IWDTAGQERYHSLAPMY
Sbjct: 13 AVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMY 72
Query: 62 YRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGE 121
YRG YDIT+ D+F RAK WV+ELQRQ +PN+++ L NK DL KR V+ +E +
Sbjct: 73 YRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASKRAVEFQEAQ 132
Query: 122 LYAQENGLSFLETSAKSAHNVNELFYEIAKRL 153
YA +N L F+ETSAK+A NVNE+F IAK+L
Sbjct: 133 AYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 164
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 209 bits (531), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 96/162 (59%), Positives = 121/162 (74%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
GK+SLVLRFVKGQF ++QESTIGAAF TQ + L++ T+KF+IWDTAGQERYHSLAPMY
Sbjct: 18 AVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQERYHSLAPMY 77
Query: 62 YRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGE 121
YRG YDIT+ ++F RAK WV+ELQRQ +P++++ L NK DL KR V+ EE +
Sbjct: 78 YRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADLANKRMVEYEEAQ 137
Query: 122 LYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVNPSRQTG 163
YA +N L F+ETSAK+A NVN+LF IAK+L + P G
Sbjct: 138 AYADDNSLLFMETSAKTAMNVNDLFLAIAKKLPKSEPQNLGG 179
>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
Length = 166
Score = 207 bits (528), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 94/152 (61%), Positives = 117/152 (76%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
GK+SLVLRFVKGQF ++QESTI AAF TQ + L++ T+KF+IWDTAGQERYHSLAPMY
Sbjct: 15 AVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMY 74
Query: 62 YRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGE 121
YRG YDIT+ D+F RAK WV+ELQRQ +PN+++ L NK DL KR V+ +E +
Sbjct: 75 YRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASKRAVEFQEAQ 134
Query: 122 LYAQENGLSFLETSAKSAHNVNELFYEIAKRL 153
YA +N L F+ETSAK+A NVNE+F IAK+L
Sbjct: 135 AYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166
>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase
pdb|1Z0D|C Chain C, Gdp-bound Rab5c Gtpase
Length = 167
Score = 207 bits (527), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 94/152 (61%), Positives = 117/152 (76%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
GK+SLVLRFVKGQF ++QESTIGAAF TQ + L++ T+KF+IWDTAG ERYHSLAPMY
Sbjct: 15 AVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLERYHSLAPMY 74
Query: 62 YRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGE 121
YRG YDIT+ D+F RAK WV+ELQRQ +PN+++ L NK DL KR V+ +E +
Sbjct: 75 YRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASKRAVEFQEAQ 134
Query: 122 LYAQENGLSFLETSAKSAHNVNELFYEIAKRL 153
YA +N L F+ETSAK+A NVNE+F IAK+L
Sbjct: 135 AYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166
>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 206 bits (524), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 95/152 (62%), Positives = 117/152 (76%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
GK+SLVLRFVKGQF +FQESTIGAAF TQ + L++ T+KF+IWDTAGQERYHSLAPMY
Sbjct: 17 AVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMY 76
Query: 62 YRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGE 121
YRG YDIT+ +SF RAK WV+ELQRQ +PN+++ L NK DL KR V +E +
Sbjct: 77 YRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQ 136
Query: 122 LYAQENGLSFLETSAKSAHNVNELFYEIAKRL 153
YA +N L F+ETSAK++ NVNE+F IAK+L
Sbjct: 137 SYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 168
>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 206 bits (524), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 95/152 (62%), Positives = 117/152 (76%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
GK+SLVLRFVKGQF +FQESTIGAAF TQ + L++ T+KF+IWDTAGQERYHSLAPMY
Sbjct: 16 AVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMY 75
Query: 62 YRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGE 121
YRG YDIT+ +SF RAK WV+ELQRQ +PN+++ L NK DL KR V +E +
Sbjct: 76 YRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQ 135
Query: 122 LYAQENGLSFLETSAKSAHNVNELFYEIAKRL 153
YA +N L F+ETSAK++ NVNE+F IAK+L
Sbjct: 136 SYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp
pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp And Aluminum Fluoride
pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gtp
Length = 170
Score = 205 bits (522), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 95/151 (62%), Positives = 117/151 (77%)
Query: 3 TGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYY 62
GK+SLVLRFVKGQF +FQESTIGAAF TQ + L++ T+KF+IWDTAGQERYHSLAPMYY
Sbjct: 17 VGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYY 76
Query: 63 RGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGEL 122
RG YDIT+ +SF RAK WV+ELQRQ +PN+++ L NK DL KR V +E +
Sbjct: 77 RGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQS 136
Query: 123 YAQENGLSFLETSAKSAHNVNELFYEIAKRL 153
YA +N L F+ETSAK++ NVNE+F IAK+L
Sbjct: 137 YADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With
Gppnhp
Length = 170
Score = 205 bits (522), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 95/151 (62%), Positives = 117/151 (77%)
Query: 3 TGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYY 62
GK+SLVLRFVKGQF +FQESTIGAAF TQ + L++ T+KF+IWDTAGQERYHSLAPMYY
Sbjct: 17 VGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYY 76
Query: 63 RGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGEL 122
RG YDIT+ +SF RAK WV+ELQRQ +PN+++ L NK DL KR V +E +
Sbjct: 77 RGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQS 136
Query: 123 YAQENGLSFLETSAKSAHNVNELFYEIAKRL 153
YA +N L F+ETSAK++ NVNE+F IAK+L
Sbjct: 137 YADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With
Gppnhp
Length = 170
Score = 205 bits (522), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 95/151 (62%), Positives = 117/151 (77%)
Query: 3 TGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYY 62
GK+SLVLRFVKGQF +FQESTIGAAF TQ + L++ T+KF+IWDTAGQERYHSLAPMYY
Sbjct: 17 VGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYY 76
Query: 63 RGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGEL 122
RG YDIT+ +SF RAK WV+ELQRQ +PN+++ L NK DL KR V +E +
Sbjct: 77 RGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQS 136
Query: 123 YAQENGLSFLETSAKSAHNVNELFYEIAKRL 153
YA +N L F+ETSAK++ NVNE+F IAK+L
Sbjct: 137 YADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With
Gppnhp
Length = 170
Score = 205 bits (522), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 95/151 (62%), Positives = 117/151 (77%)
Query: 3 TGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYY 62
GK+SLVLRFVKGQF +FQESTIGAAF TQ + L++ T+KF+IWDTAGQERYHSLAPMYY
Sbjct: 17 VGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYY 76
Query: 63 RGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGEL 122
RG YDIT+ +SF RAK WV+ELQRQ +PN+++ L NK DL KR V +E +
Sbjct: 77 RGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQS 136
Query: 123 YAQENGLSFLETSAKSAHNVNELFYEIAKRL 153
YA +N L F+ETSAK++ NVNE+F IAK+L
Sbjct: 137 YADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With
Gppnhp
Length = 170
Score = 205 bits (522), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 95/151 (62%), Positives = 117/151 (77%)
Query: 3 TGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYY 62
GK+SLVLRFVKGQF +FQESTIGAAF TQ + L++ T+KF+IWDTAGQERYHSLAPMYY
Sbjct: 17 VGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYY 76
Query: 63 RGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGEL 122
RG YDIT+ +SF RAK WV+ELQRQ +PN+++ L NK DL KR V +E +
Sbjct: 77 RGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQS 136
Query: 123 YAQENGLSFLETSAKSAHNVNELFYEIAKRL 153
YA +N L F+ETSAK++ NVNE+F IAK+L
Sbjct: 137 YADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
pdb|3MJH|C Chain C, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
Length = 168
Score = 203 bits (516), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 94/152 (61%), Positives = 116/152 (76%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
GK+SLVLRFVKGQF +FQESTIGAAF TQ + L++ T+KF+IWDTAG ERYHSLAPMY
Sbjct: 15 AVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLERYHSLAPMY 74
Query: 62 YRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGE 121
YRG YDIT+ +SF RAK WV+ELQRQ +PN+++ L NK DL KR V +E +
Sbjct: 75 YRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQ 134
Query: 122 LYAQENGLSFLETSAKSAHNVNELFYEIAKRL 153
YA +N L F+ETSAK++ NVNE+F IAK+L
Sbjct: 135 SYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 166
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 202 bits (513), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 94/152 (61%), Positives = 115/152 (75%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
GK+SLVLRFVKGQF +FQESTIGAAF TQ + L++ T+KF+IWDTAGQERYHSLAP Y
Sbjct: 17 AVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPXY 76
Query: 62 YRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGE 121
YRG YDIT+ +SF RAK WV+ELQRQ +PN+++ L NK DL KR V +E +
Sbjct: 77 YRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQ 136
Query: 122 LYAQENGLSFLETSAKSAHNVNELFYEIAKRL 153
YA +N L F ETSAK++ NVNE+F IAK+L
Sbjct: 137 SYADDNSLLFXETSAKTSXNVNEIFXAIAKKL 168
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 160 bits (406), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 80/155 (51%), Positives = 108/155 (69%), Gaps = 3/155 (1%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
GK+S+VLRFV F + +E TIGAAF TQ +++NE T+KF+IWDTAGQER+ SLAP Y
Sbjct: 13 AVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXY 72
Query: 62 YRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVD-LEE--KRKVKNE 118
YR YD+T SF +A+ WV+EL Q + ++I+ LV NK+D L+E +RKV E
Sbjct: 73 YRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVARE 132
Query: 119 EGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 153
EGE A+E GL F ETSAK+ NVN++F I +++
Sbjct: 133 EGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 151 bits (381), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 73/157 (46%), Positives = 100/157 (63%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
G GK+S+V RFV+ F TIGA+F T+ + KF IWDTAGQER+HSLAPMY
Sbjct: 33 GVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMY 92
Query: 62 YRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGE 121
YRG YDIT DSF KKWV+EL+ G N++M + NK DL + R+V ++ +
Sbjct: 93 YRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAK 152
Query: 122 LYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVNP 158
YA+ G +ETSAK+A N+ ELF I++++ ++P
Sbjct: 153 EYAESIGAIVVETSAKNAINIEELFQGISRQIPPLDP 189
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 142 bits (358), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 69/152 (45%), Positives = 97/152 (63%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
G GK+S+V RFV+ F TIGA+F T+ + KF IWDTAGQER+ +LAPMY
Sbjct: 15 GVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQERFRALAPMY 74
Query: 62 YRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGE 121
YRG YDIT ++F K WV+EL++ G P++++ + NK DL + R+V + +
Sbjct: 75 YRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAK 134
Query: 122 LYAQENGLSFLETSAKSAHNVNELFYEIAKRL 153
YA F+ETSAK+A N+NELF EI++R+
Sbjct: 135 DYADSIHAIFVETSAKNAININELFIEISRRI 166
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 140 bits (353), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 66/153 (43%), Positives = 96/153 (62%)
Query: 3 TGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYY 62
GKTSLVLR+ + +F D +T+GA+F T+ L++ + IWDTAGQER+H+L P+YY
Sbjct: 17 VGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYY 76
Query: 63 RGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGEL 122
R YDIT DSF++ K WV+EL++ + + +V NK+DLE++R V +E E
Sbjct: 77 RDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAES 136
Query: 123 YAQENGLSFLETSAKSAHNVNELFYEIAKRLAE 155
YA+ G TSAK + ELF ++ KR+ E
Sbjct: 137 YAESVGAKHYHTSAKQNKGIEELFLDLCKRMIE 169
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 139 bits (350), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 66/154 (42%), Positives = 97/154 (62%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
G GK+ L+L+F +F + TIG F ++++++ IK IWDTAGQE + S+ Y
Sbjct: 20 GVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSY 79
Query: 62 YRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGE 121
YRG YDIT D+F W+++ ++ N N+++ L+ NK DLE +R+VK EEGE
Sbjct: 80 YRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGE 139
Query: 122 LYAQENGLSFLETSAKSAHNVNELFYEIAKRLAE 155
+A+E+GL F+ETSAK+A NV E F AK + E
Sbjct: 140 AFAREHGLIFMETSAKTASNVEEAFINTAKEIYE 173
>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
The Minimal Rab Binding Domain Of Rabenosyn-5
Length = 170
Score = 138 bits (348), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 67/152 (44%), Positives = 96/152 (63%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
G GK+S++ RFV+ F TIGA+F T+ + KF IWDTAG ER+ +LAPMY
Sbjct: 16 GVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMY 75
Query: 62 YRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGE 121
YRG YDIT ++F K WV+EL++ G P++++ + NK DL + R+V + +
Sbjct: 76 YRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAK 135
Query: 122 LYAQENGLSFLETSAKSAHNVNELFYEIAKRL 153
YA F+ETSAK+A N+NELF EI++R+
Sbjct: 136 DYADSIHAIFVETSAKNAININELFIEISRRI 167
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 137 bits (345), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 65/153 (42%), Positives = 95/153 (62%)
Query: 3 TGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYY 62
GKTSLVLR+ + +F D +T+ A+F T+ L++ + IWDTAGQER+H+L P+YY
Sbjct: 31 VGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYY 90
Query: 63 RGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGEL 122
R YDIT DSF++ K WV+EL++ + + +V NK+DLE++R V +E E
Sbjct: 91 RDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAES 150
Query: 123 YAQENGLSFLETSAKSAHNVNELFYEIAKRLAE 155
YA+ G TSAK + ELF ++ KR+ E
Sbjct: 151 YAESVGAKHYHTSAKQNKGIEELFLDLCKRMIE 183
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 137 bits (344), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 69/156 (44%), Positives = 94/156 (60%), Gaps = 4/156 (2%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
G GK+ L+LRF + D STIG F + +SL T+K IWDTAGQER+ ++ Y
Sbjct: 19 GVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWDTAGQERFRTITSSY 78
Query: 62 YRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGE 121
YRG YD+T DSF+ K+W+QE+ R N+ LV NK DL KR V ++EG
Sbjct: 79 YRGAHGIIIVYDVTDRDSFDNVKQWIQEIDRYAMENVNKLLVGNKCDLVSKRVVTSDEGR 138
Query: 122 LYAQENGLSFLETSAKSAHNVNELFY----EIAKRL 153
A +G+ F+ETSAK+A+NV + F+ EI KR+
Sbjct: 139 ELADSHGIKFIETSAKNAYNVEQAFHTMAGEIKKRV 174
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 137 bits (344), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 65/153 (42%), Positives = 95/153 (62%)
Query: 3 TGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYY 62
GKTSLVLR+ + +F D +T+ A+F T+ L++ + IWDTAGQER+H+L P+YY
Sbjct: 17 VGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYY 76
Query: 63 RGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGEL 122
R YDIT DSF++ K WV+EL++ + + +V NK+DLE++R V +E E
Sbjct: 77 RDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAES 136
Query: 123 YAQENGLSFLETSAKSAHNVNELFYEIAKRLAE 155
YA+ G TSAK + ELF ++ KR+ E
Sbjct: 137 YAESVGAKHYHTSAKQNKGIEELFLDLCKRMIE 169
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 137 bits (344), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 63/152 (41%), Positives = 99/152 (65%)
Query: 4 GKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYR 63
GKTSL+ RF+ F + ++TIG F ++ + L + T++ +WDTAGQER+ SL P Y R
Sbjct: 14 GKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR 73
Query: 64 GXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELY 123
YDIT+++SF++ KW+ +++ + ++I+ LV NK DL +KR++ EEGE
Sbjct: 74 DSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTDLADKRQITIEEGEQR 133
Query: 124 AQENGLSFLETSAKSAHNVNELFYEIAKRLAE 155
A+E + F+ETSAK+ +NV +LF +A L E
Sbjct: 134 AKELSVMFIETSAKTGYNVKQLFRRVASALLE 165
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 136 bits (342), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 64/151 (42%), Positives = 98/151 (64%)
Query: 3 TGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYY 62
GKTSL+ RF+ F + ++TIG F ++ + L + TI+ +WDTAGQER+ SL P Y
Sbjct: 17 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYI 76
Query: 63 RGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGEL 122
R YDIT+++SF++ KW+ +++ + ++I+ LV NK DL +KR+V EEGE
Sbjct: 77 RDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGER 136
Query: 123 YAQENGLSFLETSAKSAHNVNELFYEIAKRL 153
A+E + F+ETSAK+ +NV +LF +A L
Sbjct: 137 KAKELNVMFIETSAKAGYNVKQLFRRVAAAL 167
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
Length = 179
Score = 135 bits (340), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 63/150 (42%), Positives = 96/150 (64%)
Query: 4 GKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYR 63
GKTSL+ RF+ F + ++TIG F ++ + L + T++ +WDTAGQER+ SL P Y R
Sbjct: 26 GKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR 85
Query: 64 GXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELY 123
YDIT+ +SF + KW+ +++ + ++I+ LV NK DL +KR+V EEGE
Sbjct: 86 DSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERK 145
Query: 124 AQENGLSFLETSAKSAHNVNELFYEIAKRL 153
A+E + F+ETSAK+ +NV +LF +A L
Sbjct: 146 AKELNVMFIETSAKAGYNVKQLFRRVAAAL 175
>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
Length = 162
Score = 135 bits (340), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 63/152 (41%), Positives = 98/152 (64%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
GKTSL+ RF+ F + ++TIG F ++ + L + T++ +WDTAGQER+ SL P Y
Sbjct: 11 SVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSY 70
Query: 62 YRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGE 121
R YDIT+++SF++ KW+ +++ + ++I+ LV NK DL +KR+V EEGE
Sbjct: 71 IRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGE 130
Query: 122 LYAQENGLSFLETSAKSAHNVNELFYEIAKRL 153
A+E + F+ETSAK+ +NV +LF +A L
Sbjct: 131 RKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 162
>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l)
pdb|4DKX|B Chain B, Crystal Structure Of The Rab 6a'(Q72l)
Length = 216
Score = 133 bits (334), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 63/151 (41%), Positives = 97/151 (64%)
Query: 3 TGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYY 62
GKTSL+ RF+ F + ++TIG F ++ + L + TI+ +WDTAG ER+ SL P Y
Sbjct: 24 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYI 83
Query: 63 RGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGEL 122
R YDIT+++SF++ KW+ +++ + ++I+ LV NK DL +KR+V EEGE
Sbjct: 84 RDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGER 143
Query: 123 YAQENGLSFLETSAKSAHNVNELFYEIAKRL 153
A+E + F+ETSAK+ +NV +LF +A L
Sbjct: 144 KAKELNVMFIETSAKAGYNVKQLFRRVAAAL 174
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 132 bits (333), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 63/152 (41%), Positives = 95/152 (62%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
G GK+ L+L+F +F + TIG F ++++++ IK IWDTAGQE + S+ Y
Sbjct: 31 GVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSY 90
Query: 62 YRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGE 121
YRG YDIT ++F W+++ ++ + N+++ L+ NK DLE +R VK EEGE
Sbjct: 91 YRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGE 150
Query: 122 LYAQENGLSFLETSAKSAHNVNELFYEIAKRL 153
+A+E+GL F+ETSAK+A NV E F AK +
Sbjct: 151 AFAREHGLIFMETSAKTACNVEEAFINTAKEI 182
>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 188
Score = 132 bits (332), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 62/152 (40%), Positives = 97/152 (63%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
GKTSL+ RF+ F + ++TIG F ++ + L + T++ +WDTAG ER+ SL P Y
Sbjct: 16 SVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLERFRSLIPSY 75
Query: 62 YRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGE 121
R YDIT+++SF++ KW+ +++ + ++I+ LV NK DL +KR+V EEGE
Sbjct: 76 IRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGE 135
Query: 122 LYAQENGLSFLETSAKSAHNVNELFYEIAKRL 153
A+E + F+ETSAK+ +NV +LF +A L
Sbjct: 136 RKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 167
>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|B Chain B, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|C Chain C, Rab6-Gtp:gcc185 Rab Binding Domain Complex
Length = 211
Score = 132 bits (332), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 62/151 (41%), Positives = 97/151 (64%)
Query: 4 GKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYR 63
GKTSL+ RF+ F + ++TIG F ++ + L + T++ +WDTAG ER+ SL P Y R
Sbjct: 28 GKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLERFRSLIPSYIR 87
Query: 64 GXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELY 123
YDIT+++SF++ KW+ +++ + ++I+ LV NK DL +KR+V EEGE
Sbjct: 88 DSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERK 147
Query: 124 AQENGLSFLETSAKSAHNVNELFYEIAKRLA 154
A+E + F+ETSAK+ +NV +LF +A L
Sbjct: 148 AKELNVMFIETSAKAGYNVKQLFRRVAAALP 178
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 129 bits (324), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 62/153 (40%), Positives = 91/153 (59%)
Query: 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPM 60
MG GK+ L+ +F + +F TIG F T+++ ++ IK IWDTAGQER+ ++
Sbjct: 24 MGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRS 83
Query: 61 YYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEG 120
YYRG YDIT ++ W+ + + NPN ++ L+ NK DLE +R V EE
Sbjct: 84 YYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEA 143
Query: 121 ELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 153
+ +A+ENGL FLE SAK+ NV + F E AK++
Sbjct: 144 KQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 176
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed
With Gdp
Length = 162
Score = 129 bits (324), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 66/152 (43%), Positives = 90/152 (59%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
GKTS++ RF F + +STIG F ++ L L+E ++ +WDTAGQER+ SL P Y
Sbjct: 11 AVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSY 70
Query: 62 YRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGE 121
R YDIT+ SFE KW+Q++ + ++I+ LV NK DL + RKV EEG
Sbjct: 71 IRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGDLRKVTYEEGX 130
Query: 122 LYAQENGLSFLETSAKSAHNVNELFYEIAKRL 153
AQE F ETSAK+ HN+ LF + A +L
Sbjct: 131 QKAQEYNTXFHETSAKAGHNIKVLFKKTASKL 162
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 128 bits (322), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 64/163 (39%), Positives = 98/163 (60%), Gaps = 2/163 (1%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
G GKT LV RF +G F Q +TIG F + + +N +K IWDTAGQER+ S+ Y
Sbjct: 36 GVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSY 95
Query: 62 YRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGE 121
YR YDIT +SF +W++E+++ + +I LV NK+DL E+R+V + E
Sbjct: 96 YRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAE 155
Query: 122 LYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVNPSRQTGM 164
+++ + +LETSAK + NV +LF ++A RL ++ +RQ +
Sbjct: 156 EFSEAQDMYYLETSAKESDNVEKLFLDLACRL--ISEARQNTL 196
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 128 bits (321), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 66/172 (38%), Positives = 98/172 (56%), Gaps = 1/172 (0%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
G GK++L+ RF + +F +STIG F T+ + ++ TIK IWDTAGQERY + Y
Sbjct: 15 GVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAY 74
Query: 62 YRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGE 121
YRG YDI ++E ++W++EL+ + N+++ LV NK DL R V +E
Sbjct: 75 YRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEAR 134
Query: 122 LYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVNPSRQTGMK-LHTESHG 172
+A++N LSF+ETSA + NV E F I + + +Q + H ES G
Sbjct: 135 AFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADRAAHDESPG 186
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 126 bits (317), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 61/153 (39%), Positives = 90/153 (58%)
Query: 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPM 60
MG GK+ L+ +F + +F TIG F T+++ ++ IK IWDTAGQ R+ ++
Sbjct: 39 MGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQGRFRAVTRS 98
Query: 61 YYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEG 120
YYRG YDIT ++ W+ + + NPN ++ L+ NK DLE +R V EE
Sbjct: 99 YYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEA 158
Query: 121 ELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 153
+ +A+ENGL FLE SAK+ NV + F E AK++
Sbjct: 159 KQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 191
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 125 bits (315), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 61/148 (41%), Positives = 90/148 (60%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
G GK++L+ RF + +F +STIG F T+ + ++ TIK IWDTAGQERY ++ Y
Sbjct: 39 GVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAY 98
Query: 62 YRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGE 121
YRG YDI ++E ++W++EL+ + N+++ LV NK DL R V +E
Sbjct: 99 YRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEAR 158
Query: 122 LYAQENGLSFLETSAKSAHNVNELFYEI 149
+A++NGLSF+ETSA + NV F I
Sbjct: 159 AFAEKNGLSFIETSALDSTNVEAAFQTI 186
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 125 bits (315), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 61/148 (41%), Positives = 90/148 (60%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
G GK++L+ RF + +F +STIG F T+ + ++ TIK IWDTAGQERY ++ Y
Sbjct: 30 GVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAY 89
Query: 62 YRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGE 121
YRG YDI ++E ++W++EL+ + N+++ LV NK DL R V +E
Sbjct: 90 YRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEAR 149
Query: 122 LYAQENGLSFLETSAKSAHNVNELFYEI 149
+A++NGLSF+ETSA + NV F I
Sbjct: 150 AFAEKNGLSFIETSALDSTNVEAAFQTI 177
>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum,
Pfb0500c
Length = 208
Score = 125 bits (313), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 70/189 (37%), Positives = 101/189 (53%), Gaps = 40/189 (21%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSL------------------------- 36
GK+S+VLR K F + +TIGA+F T V++L
Sbjct: 17 SVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNN 76
Query: 37 ------------NEVTIKFDIWDTAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAK 84
N IKFDIWDTAGQERY S+ P+YYRG +DI++ ++ +RAK
Sbjct: 77 VIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAK 136
Query: 85 KWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNE 144
WV +L+ N I+ LVANK+D + K +V E + YAQ+N L F++TSAK+ N+
Sbjct: 137 TWVNQLKISS--NYIIILVANKID-KNKFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKN 193
Query: 145 LFYEIAKRL 153
+FY +A+ +
Sbjct: 194 IFYMLAEEI 202
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 125 bits (313), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 64/161 (39%), Positives = 96/161 (59%), Gaps = 1/161 (0%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSL-NEVTIKFDIWDTAGQERYHSLAPM 60
G GK++L+ RF + +F +STIG F T+ + L N IK IWDTAGQERY ++
Sbjct: 17 GVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIWDTAGQERYRAITSA 76
Query: 61 YYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEG 120
YYRG YDIT +SFE +KW++EL+ + N+++ LV NK DL+ R + + +
Sbjct: 77 YYRGAVGALLVYDITKKNSFENIEKWLKELRDNADSNIVILLVGNKSDLKHLRVINDNDA 136
Query: 121 ELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVNPSRQ 161
YA++ L+F+ETSA A NV F+++ + V +Q
Sbjct: 137 TQYAKKEKLAFIETSALEATNVELAFHQLLNEIYNVRQKKQ 177
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 124 bits (312), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 69/176 (39%), Positives = 95/176 (53%), Gaps = 2/176 (1%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
G GK++L+ RF K +F +STIG F T+ L + IK IWDTAGQERY ++ Y
Sbjct: 23 GVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAY 82
Query: 62 YRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGE 121
YRG YDI+ S+E W+ EL+ + N+ + L+ NK DL R V EE +
Sbjct: 83 YRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESK 142
Query: 122 LYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVNPSRQTGMKLHTESHGGGRRG 177
+AQEN L F ETSA ++ NV++ F E+ + + Q M L S G G
Sbjct: 143 TFAQENQLLFTETSALNSENVDKAFEELINTIYQKVSKHQ--MDLGDSSANGNANG 196
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 124 bits (311), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 90/156 (57%), Gaps = 4/156 (2%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
G GK+ L+LRF + + STIG F + + L+ TIK IWDTAGQER+ ++ Y
Sbjct: 19 GVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSY 78
Query: 62 YRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGE 121
YRG YD+T +S+ K+W+QE+ R + N+ LV NK DL K+ V N +
Sbjct: 79 YRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAK 138
Query: 122 LYAQENGLSFLETSAKSAHNVNELFY----EIAKRL 153
+A G+ FLETSAK+A NV + F EI KR+
Sbjct: 139 EFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRM 174
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 123 bits (309), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 63/165 (38%), Positives = 97/165 (58%), Gaps = 6/165 (3%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
GTGK+ L+ +F++ +F TIG F ++V+++ T+K IWDTAGQER+ S+ Y
Sbjct: 35 GTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSY 94
Query: 62 YRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGE 121
YRG YDITS +++ W+ + + +PN+++ L NK DL+ +R+V E
Sbjct: 95 YRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEAS 154
Query: 122 LYAQENGLSFLETSAKSAHNVNELFYEIAKRL------AEVNPSR 160
+AQEN L FLETSA + NV E F + A+ + E++P R
Sbjct: 155 RFAQENELMFLETSALTGENVEEAFLKCARTILNKIDSGELDPER 199
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 123 bits (309), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 90/156 (57%), Gaps = 4/156 (2%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
G GK+ L+LRF + + STIG F + + L+ TIK IWDTAGQER+ ++ Y
Sbjct: 19 GVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSY 78
Query: 62 YRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGE 121
YRG YD+T +S+ K+W+QE+ R + N+ LV NK DL K+ V N +
Sbjct: 79 YRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAK 138
Query: 122 LYAQENGLSFLETSAKSAHNVNELFY----EIAKRL 153
+A G+ FLETSAK+A NV + F EI KR+
Sbjct: 139 EFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRM 174
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 123 bits (308), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 60/154 (38%), Positives = 90/154 (58%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
G GK+ L+LRF + + STIG F + + L+ T+K IWDTAGQER+ ++ Y
Sbjct: 18 GVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSY 77
Query: 62 YRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGE 121
YRG YD+T +SF K W+QE+ R ++ LV NK DL++KR V+ + +
Sbjct: 78 YRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAK 137
Query: 122 LYAQENGLSFLETSAKSAHNVNELFYEIAKRLAE 155
+A N + FLETSA + NV + F +A+++ E
Sbjct: 138 EFADANKMPFLETSALDSTNVEDAFLTMARQIKE 171
>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex
With Gtpgammas
pdb|1OIX|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp And Pi
Length = 191
Score = 123 bits (308), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 60/148 (40%), Positives = 89/148 (60%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
G GK++L+ RF + +F +STIG F T+ + ++ TIK IWDTAG ERY ++ Y
Sbjct: 39 GVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAY 98
Query: 62 YRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGE 121
YRG YDI ++E ++W++EL+ + N+++ LV NK DL R V +E
Sbjct: 99 YRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEAR 158
Query: 122 LYAQENGLSFLETSAKSAHNVNELFYEI 149
+A++NGLSF+ETSA + NV F I
Sbjct: 159 AFAEKNGLSFIETSALDSTNVEAAFQTI 186
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With
Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 122 bits (307), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 60/154 (38%), Positives = 90/154 (58%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
G GK+ L+LRF + + STIG F + + L+ T+K IWDTAGQER+ ++ Y
Sbjct: 18 GVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSY 77
Query: 62 YRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGE 121
YRG YD+T +SF K W+QE+ R ++ LV NK DL++KR V+ + +
Sbjct: 78 YRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAK 137
Query: 122 LYAQENGLSFLETSAKSAHNVNELFYEIAKRLAE 155
+A N + FLETSA + NV + F +A+++ E
Sbjct: 138 EFADANKMPFLETSALDSTNVEDAFLTMARQIKE 171
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 122 bits (307), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 65/157 (41%), Positives = 89/157 (56%), Gaps = 4/157 (2%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
G GK+ L+LRF + + STIG F + + L+ TIK IWDTAGQER+ ++ Y
Sbjct: 26 GVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSY 85
Query: 62 YRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGE 121
YRG YD+T +SF K+W+QE+ R + N+ LV NK DL K+ V +
Sbjct: 86 YRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAK 145
Query: 122 LYAQENGLSFLETSAKSAHNVNELFY----EIAKRLA 154
+A G+ FLETSAK+A NV + F EI KR+
Sbjct: 146 EFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMG 182
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 122 bits (307), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 89/156 (57%), Gaps = 4/156 (2%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
G GK+ L+LRF + + STIG F + + L+ TIK IWDTAGQER+ ++ Y
Sbjct: 9 GVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSY 68
Query: 62 YRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGE 121
YRG YD+T +SF K+W+QE+ R + N+ LV NK DL K+ V +
Sbjct: 69 YRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAK 128
Query: 122 LYAQENGLSFLETSAKSAHNVNELFY----EIAKRL 153
+A G+ FLETSAK+A NV + F EI KR+
Sbjct: 129 EFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 164
>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|B Chain B, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|C Chain C, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
Length = 172
Score = 122 bits (307), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 60/148 (40%), Positives = 89/148 (60%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
G GK++L+ RF + +F +STIG F T+ + ++ TIK IWDTAG ERY ++ Y
Sbjct: 18 GVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAY 77
Query: 62 YRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGE 121
YRG YDI ++E ++W++EL+ + N+++ LV NK DL R V +E
Sbjct: 78 YRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEAR 137
Query: 122 LYAQENGLSFLETSAKSAHNVNELFYEI 149
+A++NGLSF+ETSA + NV F I
Sbjct: 138 AFAEKNGLSFIETSALDSTNVEAAFQTI 165
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 122 bits (306), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 65/157 (41%), Positives = 89/157 (56%), Gaps = 4/157 (2%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
G GK+ L+LRF + + STIG F + + L+ TIK IWDTAGQER+ ++ Y
Sbjct: 35 GVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSY 94
Query: 62 YRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGE 121
YRG YD+T +SF K+W+QE+ R + N+ LV NK DL K+ V +
Sbjct: 95 YRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAK 154
Query: 122 LYAQENGLSFLETSAKSAHNVNELFY----EIAKRLA 154
+A G+ FLETSAK+A NV + F EI KR+
Sbjct: 155 EFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMG 191
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 122 bits (306), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 89/156 (57%), Gaps = 4/156 (2%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
G GK+ L+LRF + + STIG F + + L+ TIK IWDTAGQER+ ++ Y
Sbjct: 16 GVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSY 75
Query: 62 YRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGE 121
YRG YD+T +SF K+W+QE+ R + N+ LV NK DL K+ V +
Sbjct: 76 YRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAK 135
Query: 122 LYAQENGLSFLETSAKSAHNVNELFY----EIAKRL 153
+A G+ FLETSAK+A NV + F EI KR+
Sbjct: 136 EFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 171
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 122 bits (306), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 60/154 (38%), Positives = 90/154 (58%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
G GK+ L+LRF + + STIG F + + L+ T+K IWDTAGQER+ ++ Y
Sbjct: 31 GVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSY 90
Query: 62 YRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGE 121
YRG YD+T +SF K W+QE+ R ++ LV NK DL++KR V+ + +
Sbjct: 91 YRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAK 150
Query: 122 LYAQENGLSFLETSAKSAHNVNELFYEIAKRLAE 155
+A N + FLETSA + NV + F +A+++ E
Sbjct: 151 EFADANKMPFLETSALDSTNVEDAFLTMARQIKE 184
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 122 bits (305), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 89/156 (57%), Gaps = 4/156 (2%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
G GK+ L+LRF + + STIG F + + L+ TIK IWDTAGQER+ ++ Y
Sbjct: 16 GVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSY 75
Query: 62 YRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGE 121
YRG YD+T +SF K+W+QE+ R + N+ LV NK DL K+ V +
Sbjct: 76 YRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAK 135
Query: 122 LYAQENGLSFLETSAKSAHNVNELFY----EIAKRL 153
+A G+ FLETSAK+A NV + F EI KR+
Sbjct: 136 EFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 171
>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
pdb|2D7C|B Chain B, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
Length = 167
Score = 122 bits (305), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 60/148 (40%), Positives = 89/148 (60%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
G GK++L+ RF + +F +STIG F T+ + ++ TIK IWDTAG ERY ++ Y
Sbjct: 15 GVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAY 74
Query: 62 YRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGE 121
YRG YDI ++E ++W++EL+ + N+++ LV NK DL R V +E
Sbjct: 75 YRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKSDLRHLRAVPTDEAR 134
Query: 122 LYAQENGLSFLETSAKSAHNVNELFYEI 149
+A++NGLSF+ETSA + NV F I
Sbjct: 135 AFAEKNGLSFIETSALDSTNVEAAFQTI 162
>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZD|B Chain B, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZH|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Family
Interacting Protein 2
Length = 173
Score = 122 bits (305), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 60/148 (40%), Positives = 89/148 (60%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
G GK++L+ RF + +F +STIG F T+ + ++ TIK IWDTAG ERY ++ Y
Sbjct: 21 GVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAY 80
Query: 62 YRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGE 121
YRG YDI ++E ++W++EL+ + N+++ LV NK DL R V +E
Sbjct: 81 YRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKSDLRHLRAVPTDEAR 140
Query: 122 LYAQENGLSFLETSAKSAHNVNELFYEI 149
+A++NGLSF+ETSA + NV F I
Sbjct: 141 AFAEKNGLSFIETSALDSTNVEAAFQTI 168
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 122 bits (305), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 64/153 (41%), Positives = 90/153 (58%), Gaps = 1/153 (0%)
Query: 2 GTGKTSLVLRFVKGQFFDFQ-ESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPM 60
G GKT L++RF G F ST+G F +VL ++ V +K +WDTAGQER+ S+
Sbjct: 20 GVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHA 79
Query: 61 YYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEG 120
YYR YD+T+ SF+ + W+ E+ ++ + L+ NKVD +R VK E+G
Sbjct: 80 YYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDG 139
Query: 121 ELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 153
E A+E GL F+ETSAK+ NV+ F IAK L
Sbjct: 140 EKLAKEYGLPFMETSAKTGLNVDLAFTAIAKEL 172
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 121 bits (304), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 88/156 (56%), Gaps = 4/156 (2%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
G GK L+LRF + + STIG F + + L+ TIK IWDTAGQER+ ++ Y
Sbjct: 26 GVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSY 85
Query: 62 YRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGE 121
YRG YD+T +SF K+W+QE+ R + N+ LV NK DL K+ V +
Sbjct: 86 YRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAK 145
Query: 122 LYAQENGLSFLETSAKSAHNVNELFY----EIAKRL 153
+A G+ FLETSAK+A NV + F EI KR+
Sbjct: 146 EFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 181
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 120 bits (302), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 65/155 (41%), Positives = 88/155 (56%), Gaps = 4/155 (2%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
G GK+ L+LRF + + STIG F + + L+ TIK IWDTAGQER+ ++ Y
Sbjct: 43 GVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSY 102
Query: 62 YRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGE 121
YRG YD+T +SF K+W+QE+ R + N+ LV NK DL K+ V +
Sbjct: 103 YRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAK 162
Query: 122 LYAQENGLSFLETSAKSAHNVNELFY----EIAKR 152
+A G+ FLETSAK+A NV + F EI KR
Sbjct: 163 EFADSLGIPFLETSAKNATNVEQSFXTXAAEIKKR 197
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 120 bits (302), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 61/165 (36%), Positives = 96/165 (58%), Gaps = 6/165 (3%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
GTGK+ L+ +F++ +F D TIG F ++++++ +K IWDTAGQER+ S+ Y
Sbjct: 20 GTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSY 79
Query: 62 YRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGE 121
YRG YDITS +++ W+ + + + N+++ L NK DL+ R+V E
Sbjct: 80 YRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEAS 139
Query: 122 LYAQENGLSFLETSAKSAHNVNELFYEIAKRL------AEVNPSR 160
+AQEN L FLETSA + NV E F + A+++ E++P R
Sbjct: 140 RFAQENELMFLETSALTGENVEEAFVQCARKILNKIESGELDPER 184
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 119 bits (299), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 61/154 (39%), Positives = 91/154 (59%), Gaps = 1/154 (0%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
G GK+ L++RFV+ +F +TIG F + + +N +K IWDTAGQER+ ++ Y
Sbjct: 13 GVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAY 72
Query: 62 YRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGE 121
YRG YDIT +F K+W + + N + LV NK D+ E R V ++GE
Sbjct: 73 YRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETRVVTADQGE 131
Query: 122 LYAQENGLSFLETSAKSAHNVNELFYEIAKRLAE 155
A+E G+ F+E+SAK+ NVNE+F+ +AK + E
Sbjct: 132 ALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQE 165
>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp
Length = 193
Score = 119 bits (297), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 57/152 (37%), Positives = 86/152 (56%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
G GKT+L+ RF + +F +TIG F T+ + L +K IWDTAG ERY ++ Y
Sbjct: 35 GVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAY 94
Query: 62 YRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGE 121
YRG +D+T ++ ++W++EL +++ LV NK DL + R+V EE
Sbjct: 95 YRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEAR 154
Query: 122 LYAQENGLSFLETSAKSAHNVNELFYEIAKRL 153
++A+ NGL FLETSA + NV F + K +
Sbjct: 155 MFAENNGLLFLETSALDSTNVELAFETVLKEI 186
>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
pdb|3TSO|B Chain B, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
Length = 178
Score = 119 bits (297), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 57/152 (37%), Positives = 86/152 (56%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
G GKT+L+ RF + +F +TIG F T+ + L +K IWDTAG ERY ++ Y
Sbjct: 20 GVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAY 79
Query: 62 YRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGE 121
YRG +D+T ++ ++W++EL +++ LV NK DL + R+V EE
Sbjct: 80 YRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEAR 139
Query: 122 LYAQENGLSFLETSAKSAHNVNELFYEIAKRL 153
++A+ NGL FLETSA + NV F + K +
Sbjct: 140 MFAENNGLLFLETSALDSTNVELAFETVLKEI 171
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 119 bits (297), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 64/156 (41%), Positives = 88/156 (56%), Gaps = 4/156 (2%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
G GK+ L+LRF + + STIG F + + L+ TIK IWDTAGQER+ ++ Y
Sbjct: 18 GVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSY 77
Query: 62 YRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGE 121
YRG YD+T +SF K+W+QE+ R + N+ LV K DL K+ V +
Sbjct: 78 YRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGIKCDLTTKKVVDYTTAK 137
Query: 122 LYAQENGLSFLETSAKSAHNVNELFY----EIAKRL 153
+A G+ FLETSAK+A NV + F EI KR+
Sbjct: 138 EFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 173
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 118 bits (296), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 60/164 (36%), Positives = 97/164 (59%), Gaps = 2/164 (1%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
G GK+ L++RFV+ +F +TIG F + + +N +K +WDTAGQER+ ++ Y
Sbjct: 30 GVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAY 89
Query: 62 YRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGE 121
YRG YD+T +F K+W + + N + LV NK D+ E R V ++GE
Sbjct: 90 YRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETRVVTADQGE 148
Query: 122 LYAQENGLSFLETSAKSAHNVNELFYEIAKRLAE-VNPSRQTGM 164
A+E G+ F+E+SAK+ NVNE+F+ +AK + E ++ ++ G+
Sbjct: 149 ALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDSNKLVGV 192
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 118 bits (296), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 62/154 (40%), Positives = 91/154 (59%), Gaps = 1/154 (0%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
G GK+ L++RFV+ +F +TIG F + + +N +K IWDTAGQER+ ++ Y
Sbjct: 13 GVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAY 72
Query: 62 YRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGE 121
YRG YDIT +F K+W + + N + LV NK D E R V ++GE
Sbjct: 73 YRGAXGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD-XETRVVTADQGE 131
Query: 122 LYAQENGLSFLETSAKSAHNVNELFYEIAKRLAE 155
A+E G+ F+E+SAK+ NVNE+F+ +AK + E
Sbjct: 132 ALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQE 165
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 118 bits (295), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 59/154 (38%), Positives = 91/154 (59%), Gaps = 1/154 (0%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
G GK+ L++RFV+ +F +TIG F + + +N +K +WDTAGQER+ ++ Y
Sbjct: 17 GVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAY 76
Query: 62 YRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGE 121
YRG YD+T +F K+W + + N + LV NK D+ E R V ++GE
Sbjct: 77 YRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETRVVTADQGE 135
Query: 122 LYAQENGLSFLETSAKSAHNVNELFYEIAKRLAE 155
A+E G+ F+E+SAK+ NVNE+F+ +AK + E
Sbjct: 136 ALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQE 169
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 117 bits (292), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 57/152 (37%), Positives = 91/152 (59%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
GTGK+ L+ +F++ +F D TIG F ++++++ +K IWDTAGQER+ S+ Y
Sbjct: 21 GTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSY 80
Query: 62 YRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGE 121
YRG YDITS +++ W+ + + + N+++ L NK DL+ R+V E
Sbjct: 81 YRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEAS 140
Query: 122 LYAQENGLSFLETSAKSAHNVNELFYEIAKRL 153
+AQEN L FLETSA + +V E F + A+++
Sbjct: 141 RFAQENELMFLETSALTGEDVEEAFVQCARKI 172
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 116 bits (291), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 60/154 (38%), Positives = 91/154 (59%), Gaps = 1/154 (0%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
G GK+ L++RFV+ +F +TIG F + + +N +K +WDTAGQER+ ++ Y
Sbjct: 13 GVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAY 72
Query: 62 YRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGE 121
YRG YD+T +F K+W + + N + LV NK D E R V ++GE
Sbjct: 73 YRGAXGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD-XETRVVTADQGE 131
Query: 122 LYAQENGLSFLETSAKSAHNVNELFYEIAKRLAE 155
A+E G+ F+E+SAK+ NVNE+F+ +AK + E
Sbjct: 132 ALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQE 165
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 115 bits (288), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 56/152 (36%), Positives = 88/152 (57%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
G GKT ++ RF + F STIG F + + L+ IK IWDTAGQER+ ++ Y
Sbjct: 16 GVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 75
Query: 62 YRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGE 121
YRG YDIT+ SF+ + W++ ++ + ++ ++ NK D+ +KR+V E GE
Sbjct: 76 YRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGE 135
Query: 122 LYAQENGLSFLETSAKSAHNVNELFYEIAKRL 153
A + G+ F+ETSAK+ NV F+ +A+ +
Sbjct: 136 KLALDYGIKFMETSAKANINVENAFFTLARDI 167
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 115 bits (288), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 56/152 (36%), Positives = 88/152 (57%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
G GKT ++ RF + F STIG F + + L+ IK IWDTAGQER+ ++ Y
Sbjct: 18 GVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 77
Query: 62 YRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGE 121
YRG YDIT+ SF+ + W++ ++ + ++ ++ NK D+ +KR+V E GE
Sbjct: 78 YRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGE 137
Query: 122 LYAQENGLSFLETSAKSAHNVNELFYEIAKRL 153
A + G+ F+ETSAK+ NV F+ +A+ +
Sbjct: 138 KLALDYGIKFMETSAKANINVENAFFTLARDI 169
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 114 bits (286), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 88/150 (58%), Gaps = 1/150 (0%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
G GKTSL+ RF F + +ST+G F + + L I+ IWDTAGQER++S+ Y
Sbjct: 36 GVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAY 95
Query: 62 YRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGE 121
YR YDIT ++F+ KW++ + + + + + LV NK+D E R++ ++GE
Sbjct: 96 YRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGE 155
Query: 122 LYAQE-NGLSFLETSAKSAHNVNELFYEIA 150
+AQ+ G+ F E SAK NV+E+F ++
Sbjct: 156 KFAQQITGMRFCEASAKDNFNVDEIFLKLV 185
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 114 bits (285), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 56/152 (36%), Positives = 90/152 (59%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
GTGK+ L+ +F++ +F D TIG F ++++++ +K IWDTAG ER+ S+ Y
Sbjct: 18 GTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGLERFRSVTRSY 77
Query: 62 YRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGE 121
YRG YDITS +++ W+ + + + N+++ L NK DL+ R+V E
Sbjct: 78 YRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEAS 137
Query: 122 LYAQENGLSFLETSAKSAHNVNELFYEIAKRL 153
+AQEN L FLETSA + +V E F + A+++
Sbjct: 138 RFAQENELMFLETSALTGEDVEEAFVQCARKI 169
>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp
pdb|3RWO|B Chain B, Crystal Structure Of Ypt32 In Complex With Gdp
pdb|3RWO|A Chain A, Crystal Structure Of Ypt32 In Complex With Gdp
Length = 185
Score = 112 bits (279), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/148 (38%), Positives = 84/148 (56%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
G GK++L+ RF +F +STIG F T+ + + IK IWDTAG ERY ++ Y
Sbjct: 20 GVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDTAGLERYRAITSAY 79
Query: 62 YRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGE 121
YRG YDI+ S+E W+ EL+ + N+ + L+ NK DL R V +E +
Sbjct: 80 YRGAVGALIVYDISKSSSYENCNHWLTELRENADDNVAVGLIGNKSDLAHLRAVPTDEAK 139
Query: 122 LYAQENGLSFLETSAKSAHNVNELFYEI 149
+A EN + F ETSA ++ NV++ F E+
Sbjct: 140 NFAMENQMLFTETSALNSDNVDKAFREL 167
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 110 bits (275), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 61/163 (37%), Positives = 90/163 (55%), Gaps = 4/163 (2%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
G GK+SL+LRF F +TIG F + + +N +K IWDTAGQER+ ++ Y
Sbjct: 19 GVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTY 78
Query: 62 YRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGE 121
YRG YD+TS +SF K+W+ E+ Q ++ LV NK D E++ V+ E+
Sbjct: 79 YRGTHGVIVVYDVTSAESFVNVKRWLHEIN-QNCDDVCRILVGNKNDDPERKVVETEDAY 137
Query: 122 LYAQENGLSFLETSAKSAHNVNELF---YEIAKRLAEVNPSRQ 161
+A + G+ ETSAK NV E+F E+ R + N ++Q
Sbjct: 138 KFAGQMGIQLFETSAKENVNVEEMFNCITELVLRAKKDNLAKQ 180
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 110 bits (274), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 58/152 (38%), Positives = 82/152 (53%), Gaps = 1/152 (0%)
Query: 3 TGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYY 62
GKT +V RF G F + Q STIG F + L + +K IWDTAGQER+ ++ YY
Sbjct: 40 VGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYY 99
Query: 63 RGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGEL 122
R YDIT SF W++++++ N++ L+ NK DL E R+V E +
Sbjct: 100 RSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQS 159
Query: 123 YAQE-NGLSFLETSAKSAHNVNELFYEIAKRL 153
A+ + L +ETSAK + NV E F +A L
Sbjct: 160 LAEHYDILCAIETSAKDSSNVEEAFLRVATEL 191
>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
Length = 195
Score = 108 bits (269), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 58/155 (37%), Positives = 88/155 (56%), Gaps = 2/155 (1%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
G GK+SL+LRF F +TIG F + +S++ K IWDTAGQER+ +L P Y
Sbjct: 25 GVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSY 84
Query: 62 YRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPN-LIMFLVANKVDLEEKRKVKNEEG 120
YRG YD+T D+F + W+ EL+ N ++ LV NK+D +E R+V EG
Sbjct: 85 YRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNXLVGNKID-KENREVDRNEG 143
Query: 121 ELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAE 155
+A+++ F+E SAK+ V F E+ +++ +
Sbjct: 144 LKFARKHSXLFIEASAKTCDGVQCAFEELVEKIIQ 178
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 106 bits (264), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 82/153 (53%)
Query: 3 TGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYY 62
GKTS + R+ F ST+G F + + +E +K IWDTAGQERY ++ YY
Sbjct: 34 VGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYY 93
Query: 63 RGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGEL 122
RG YDIT+ +SF + W +++ N + LV NK D+EE+R V E+G+L
Sbjct: 94 RGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQL 153
Query: 123 YAQENGLSFLETSAKSAHNVNELFYEIAKRLAE 155
A++ G F E SAK +V + F + + +
Sbjct: 154 LAEQLGFDFFEASAKENISVRQAFERLVDAICD 186
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 105 bits (261), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 56/154 (36%), Positives = 78/154 (50%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
GKTS + R+ F ST+G F + + N+ IK IWDTAGQERY ++ Y
Sbjct: 15 SVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAY 74
Query: 62 YRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGE 121
YRG YDIT+ +SF + W +++ N + LV NK D+E++R V +E G
Sbjct: 75 YRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGR 134
Query: 122 LYAQENGLSFLETSAKSAHNVNELFYEIAKRLAE 155
A G F E SAK NV + F + + E
Sbjct: 135 QLADHLGFEFFEASAKDNINVKQTFERLVDVICE 168
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 104 bits (259), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 79/153 (51%)
Query: 3 TGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYY 62
GKTS + R+ F ST+G F + + ++ IK IWDTAGQERY ++ YY
Sbjct: 33 VGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYY 92
Query: 63 RGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGEL 122
RG YDI + +SF + W +++ N + LV NK DLE++R V E+G
Sbjct: 93 RGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRR 152
Query: 123 YAQENGLSFLETSAKSAHNVNELFYEIAKRLAE 155
A + G F E SAK NV ++F + + E
Sbjct: 153 LADDLGFEFFEASAKENINVKQVFERLVDVICE 185
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 102 bits (253), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 89/155 (57%), Gaps = 6/155 (3%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
G GKTSL+ ++V +F + ++TIGA F T+ + +++ + IWDTAGQER+ SL +
Sbjct: 18 GVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAF 77
Query: 62 YRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNP----NLIMFLVANKVDLEEKRKVKN 117
YRG +D+T+ ++F+ W E Q +P N ++ NK+DL E R+V
Sbjct: 78 YRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDL-ENRQVAT 136
Query: 118 EEGELYA-QENGLSFLETSAKSAHNVNELFYEIAK 151
+ + + +N + + ETSAK A NV + F IA+
Sbjct: 137 KRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIAR 171
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 101 bits (252), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 89/155 (57%), Gaps = 6/155 (3%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
G GKTSL+ ++V +F + ++TIGA F T+ + +++ + IWDTAGQER+ SL +
Sbjct: 18 GVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAF 77
Query: 62 YRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNP----NLIMFLVANKVDLEEKRKVKN 117
YRG +D+T+ ++F+ W E Q +P N ++ NK+DL E R+V
Sbjct: 78 YRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDL-ENRQVAT 136
Query: 118 EEGELYA-QENGLSFLETSAKSAHNVNELFYEIAK 151
+ + + +N + + ETSAK A NV + F IA+
Sbjct: 137 KRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIAR 171
>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal
Structure Of The Small G Protein Rab3a Complexed With
The Effector Domain Of Rabphilin-3a
Length = 203
Score = 100 bits (250), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 57/152 (37%), Positives = 78/152 (51%)
Query: 4 GKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYR 63
GKTS + R+ F ST+G F + + N+ IK IWDTAG ERY ++ YYR
Sbjct: 20 GKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYR 79
Query: 64 GXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELY 123
G YDIT+ +SF + W +++ N + LV NK D E++R V +E G
Sbjct: 80 GAXGFILXYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDXEDERVVSSERGRQL 139
Query: 124 AQENGLSFLETSAKSAHNVNELFYEIAKRLAE 155
A G F E SAK NV + F + + E
Sbjct: 140 ADHLGFEFFEASAKDNINVKQTFERLVDVICE 171
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 100 bits (249), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 63/168 (37%), Positives = 88/168 (52%), Gaps = 17/168 (10%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFD------IWDTAGQERYH 55
G GKTSL+ R+V ++ ++TIGA F T+ EVT+ D +WDTAGQER+
Sbjct: 18 GVGKTSLMHRYVNDKYSQQYKATIGADFLTK-----EVTVDGDKVATMQVWDTAGQERFQ 72
Query: 56 SLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPN----LIMFLVANKVDLEE 111
SL +YRG YD+T+ SFE K W E N N ++ NK+D EE
Sbjct: 73 SLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEE 132
Query: 112 KRKVKNEEG--ELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVN 157
+K+ +E+ EL + TSAK+A NV+ F EIA+ + N
Sbjct: 133 SKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQQN 180
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 100 bits (249), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 54/155 (34%), Positives = 88/155 (56%), Gaps = 6/155 (3%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
G GKTSL+ ++V +F + ++TIGA F T+ + +++ + IWDTAGQER+ SL +
Sbjct: 18 GVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAF 77
Query: 62 YRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNP----NLIMFLVANKVDLEEKRKVKN 117
YRG +D+T+ ++F+ W E Q +P N ++ NK+D E R+V
Sbjct: 78 YRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDF-ENRQVAT 136
Query: 118 EEGELYA-QENGLSFLETSAKSAHNVNELFYEIAK 151
+ + + +N + + ETSAK A NV + F IA+
Sbjct: 137 KRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIAR 171
>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
Length = 207
Score = 99.4 bits (246), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 54/155 (34%), Positives = 88/155 (56%), Gaps = 6/155 (3%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
G GKTSL+ ++V +F + ++TIGA F T+ + +++ + IWDTAG ER+ SL +
Sbjct: 18 GVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGLERFQSLGVAF 77
Query: 62 YRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNP----NLIMFLVANKVDLEEKRKVKN 117
YRG +D+T+ ++F+ W E Q +P N ++ NK+DL E R+V
Sbjct: 78 YRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDL-ENRQVAT 136
Query: 118 EEGELYA-QENGLSFLETSAKSAHNVNELFYEIAK 151
+ + + +N + + ETSAK A NV + F IA+
Sbjct: 137 KRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIAR 171
>pdb|4FMC|F Chain F, Espg-Rab1 Complex
Length = 117
Score = 96.7 bits (239), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 63/108 (58%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
G GK+ L+LRF + + STIG F + + L+ TIK IWDTAGQER+ ++ Y
Sbjct: 8 GVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSY 67
Query: 62 YRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDL 109
YRG YD+T +SF K+W+QE+ R + N+ LV NK DL
Sbjct: 68 YRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 115
>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
Length = 189
Score = 96.3 bits (238), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 55/156 (35%), Positives = 82/156 (52%), Gaps = 5/156 (3%)
Query: 3 TGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYH-SLAPMY 61
GKT L RF G+F D E+TIG F + + ++ IK +WDTAGQER+ S+ Y
Sbjct: 31 VGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHY 90
Query: 62 YRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLI-MFLVANKVDLEEKRKVKNEEG 120
YR YD+T+M SF W++E ++ N I LV NK DL +V +
Sbjct: 91 YRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLA 150
Query: 121 ELYAQENGLSFLETSAKSAHN---VNELFYEIAKRL 153
+ +A + + ETSAK+ ++ V +F +A +L
Sbjct: 151 QKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKL 186
>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group
pdb|1Z2A|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In P2(1)2(1)2(1) Space
Group
Length = 168
Score = 92.8 bits (229), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 82/151 (54%), Gaps = 1/151 (0%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
GK+S++ R+ KG F + TIG F + + +N+ ++ +WDTAGQE + ++ Y
Sbjct: 15 AVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAY 74
Query: 62 YRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGE 121
YRG + T +SFE W +++ + ++ LV NK+DL + +KNEE E
Sbjct: 75 YRGAQACVLVFSTTDRESFEAISSWREKVVAEVG-DIPTALVQNKIDLLDDSCIKNEEAE 133
Query: 122 LYAQENGLSFLETSAKSAHNVNELFYEIAKR 152
A+ L F TS K NV+E+F +A++
Sbjct: 134 GLAKRLKLRFYRTSVKEDLNVSEVFKYLAEK 164
>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
Gtpase Bound To Gdp And Alf3
Length = 198
Score = 92.0 bits (227), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 79/156 (50%), Gaps = 5/156 (3%)
Query: 3 TGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYH-SLAPMY 61
GKT L RF G+F D E+TIG F + + ++ IK +WDTAGQER+ S+ Y
Sbjct: 40 VGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHY 99
Query: 62 YRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLI-MFLVANKVDLEEKRKVKNEEG 120
YR YD T+ SF W++E ++ N I LV NK DL +V +
Sbjct: 100 YRNVHAVVFVYDXTNXASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLA 159
Query: 121 ELYAQENGLSFLETSAKSAHN---VNELFYEIAKRL 153
+ +A + ETSAK+ ++ V +F +A +L
Sbjct: 160 QKFADTHSXPLFETSAKNPNDNDHVEAIFXTLAHKL 195
>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1
Length = 169
Score = 90.9 bits (224), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 92/155 (59%), Gaps = 3/155 (1%)
Query: 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPM 60
+G GK++L ++FV+G F + + TI ++ QV ++ +I DTAG E++ ++ +
Sbjct: 14 VGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQV-EVDAQQCMLEILDTAGTEQFTAMRDL 72
Query: 61 YYRGXXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEE 119
Y + Y IT+ +F + +++ R + ++ M LV NK DLE++R V E+
Sbjct: 73 YMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDERVVGKEQ 132
Query: 120 GE-LYAQENGLSFLETSAKSAHNVNELFYEIAKRL 153
G+ L Q N +FLE+SAKS NVNE+FY++ +++
Sbjct: 133 GQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 167
>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex
pdb|3CF6|R Chain R, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 167
Score = 90.5 bits (223), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 91/154 (59%), Gaps = 3/154 (1%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
G GK++L ++FV+G F + + TI ++ QV ++ +I DTAG E++ ++ +Y
Sbjct: 13 GVGKSALTVQFVQGIFVEKYDPTIEDSYRKQV-EVDAQQCMLEILDTAGTEQFTAMRDLY 71
Query: 62 YRGXXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEG 120
+ Y IT+ +F + +++ R + ++ M LV NK DLE++R V E+G
Sbjct: 72 MKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDERVVGKEQG 131
Query: 121 E-LYAQENGLSFLETSAKSAHNVNELFYEIAKRL 153
+ L Q N +FLE+SAKS NVNE+FY++ +++
Sbjct: 132 QNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 165
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 89.7 bits (221), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 104/182 (57%), Gaps = 4/182 (2%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
G GK++L L+F+ +F + E T ++ +V+ L+ ++ DI DTAGQE Y ++ Y
Sbjct: 24 GVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQEDYAAIRDNY 82
Query: 62 YRGXXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEG 120
+R + IT M+SF + +++ R + + N+ LV NK DLE+KR+V EE
Sbjct: 83 FRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEA 142
Query: 121 ELYAQENGLSFLETSAKSAHNVNELFYEIAK--RLAEVNPSRQTGMKLHTESHGGGRRGF 178
+ A++ ++++ETSAK+ NV+++F+++ + R ++ S++ K +S R
Sbjct: 143 KNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARKMEDSKEKNGKKKRKSLAKRIRER 202
Query: 179 CC 180
CC
Sbjct: 203 CC 204
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 89.0 bits (219), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 93/153 (60%), Gaps = 2/153 (1%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
G GK++L L+F+ +F + E T ++ +V+ L+ ++ DI DTAGQE Y ++ Y
Sbjct: 28 GVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQEDYAAIRDNY 86
Query: 62 YRGXXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEG 120
+R + IT M+SF + +++ R + + N+ LV NK DLE+KR+V EE
Sbjct: 87 FRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEA 146
Query: 121 ELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 153
+ A++ ++++ETSAK+ NV+++F+++ + +
Sbjct: 147 KNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 179
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 89.0 bits (219), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 93/153 (60%), Gaps = 2/153 (1%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
G GK++L L+F+ +F + E T ++ +V+ L+ ++ DI DTAGQE Y ++ Y
Sbjct: 16 GVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQEDYAAIRDNY 74
Query: 62 YRGXXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEG 120
+R + IT M+SF + +++ R + + N+ LV NK DLE+KR+V EE
Sbjct: 75 FRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEA 134
Query: 121 ELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 153
+ A++ ++++ETSAK+ NV+++F+++ + +
Sbjct: 135 KNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 167
>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e)
Complexed With Gppnhp And The Ras-Binding-Domain Of
Human C-Raf1, Residues 51-131
pdb|3KUC|A Chain A, Complex Of Rap1a(E30dK31E)GDP WITH RAFRBD(A85KN71R)
Length = 167
Score = 89.0 bits (219), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 90/154 (58%), Gaps = 3/154 (1%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
G GK++L ++FV+G F D + TI ++ QV ++ +I DTAG E++ ++ +Y
Sbjct: 13 GVGKSALTVQFVQGIFVDEYDPTIEDSYRKQV-EVDCQQCMLEILDTAGTEQFTAMRDLY 71
Query: 62 YRGXXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEG 120
+ Y IT+ +F + +++ R + ++ M LV NK DLE++R V E+G
Sbjct: 72 MKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQG 131
Query: 121 E-LYAQENGLSFLETSAKSAHNVNELFYEIAKRL 153
+ L Q +FLE+SAKS NVNE+FY++ +++
Sbjct: 132 QNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
Length = 168
Score = 88.2 bits (217), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 92/153 (60%), Gaps = 2/153 (1%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
G GK++L L+F+ +F + E T ++ +V+ L+ ++ DI DTAGQE Y ++ Y
Sbjct: 14 GVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQEDYAAIRDNY 72
Query: 62 YRGXXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEG 120
+R + IT M+SF + +++ R + + N+ LV NK DLE+KR+V EE
Sbjct: 73 FRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEA 132
Query: 121 ELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 153
+ A + ++++ETSAK+ NV+++F+++ + +
Sbjct: 133 KNRADQWNVNYVETSAKTRANVDKVFFDLMREI 165
>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp
Analogue
Length = 180
Score = 88.2 bits (217), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/160 (36%), Positives = 81/160 (50%), Gaps = 6/160 (3%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
G GK+SL+ R+V +F TIG F + L ++ + IWDTAGQER+ SL +
Sbjct: 17 GVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQERFKSLRTPF 76
Query: 62 YRGXXXXXXXYDITSMDSFERAKKWVQELQRQG---NPNLIMFLV-ANKVDLEEKRKVKN 117
YRG + + SFE W +E +P F+V NKVD +E R+V
Sbjct: 77 YRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVVLGNKVD-KEDRQVTT 135
Query: 118 EEGELYAQENG-LSFLETSAKSAHNVNELFYEIAKRLAEV 156
EE + + ENG +LETSAK NV F E +++ V
Sbjct: 136 EEAQTWCMENGDYPYLETSAKDDTNVTVAFEEAVRQVLAV 175
>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
pdb|1S8F|B Chain B, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
Length = 177
Score = 88.2 bits (217), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 81/157 (51%), Gaps = 6/157 (3%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
G GK+SL+ R+V +F TIG F + L ++ + IWDTAGQER+ SL +
Sbjct: 19 GVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPF 78
Query: 62 YRGXXXXXXXYDITSMDSFERAKKWVQELQRQGN---PNLIMFLV-ANKVDLEEKRKVKN 117
YRG + + SF+ W +E + P F++ NK+D+ E R+V
Sbjct: 79 YRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISE-RQVST 137
Query: 118 EEGELYAQENG-LSFLETSAKSAHNVNELFYEIAKRL 153
EE + + ++NG + ETSAK A NV F E +R+
Sbjct: 138 EEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 174
>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
pdb|1WMS|B Chain B, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
Length = 177
Score = 87.8 bits (216), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 81/157 (51%), Gaps = 6/157 (3%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
G GK+SL+ R+V +F TIG F + L ++ + IWDTAGQER+ SL +
Sbjct: 17 GVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPF 76
Query: 62 YRGXXXXXXXYDITSMDSFERAKKWVQELQRQGN---PNLIMFLV-ANKVDLEEKRKVKN 117
YRG + + SF+ W +E + P F++ NK+D+ E R+V
Sbjct: 77 YRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISE-RQVST 135
Query: 118 EEGELYAQENG-LSFLETSAKSAHNVNELFYEIAKRL 153
EE + + ++NG + ETSAK A NV F E +R+
Sbjct: 136 EEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 172
>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant
pdb|1QG4|B Chain B, Canine Gdp-Ran F72y Mutant
Length = 216
Score = 87.4 bits (215), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 84/152 (55%), Gaps = 3/152 (1%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
GTGKT+ V R + G+F +T+G V N IKF++WDTAGQE+Y L Y
Sbjct: 20 GTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKYGGLRDGY 79
Query: 62 YRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGE 121
Y +D+TS +++ W ++L R N+ + L NKVD+++ RKVK +
Sbjct: 80 YIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKD-RKVKAKSIV 137
Query: 122 LYAQENGLSFLETSAKSAHNVNELFYEIAKRL 153
+ ++N L + + SAKS +N + F +A++L
Sbjct: 138 FHRKKN-LQYYDISAKSNYNFEKPFLWLARKL 168
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 87.4 bits (215), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 78/158 (49%), Gaps = 6/158 (3%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
GK+S ++R K +F + +T+G F + L ++ +WDTAGQER+ S+A Y
Sbjct: 38 AVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSY 97
Query: 62 YRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDL------EEKRKV 115
+R YD+T SF ++WV ++ + + + LV NK D+ E ++ V
Sbjct: 98 FRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCV 157
Query: 116 KNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 153
GE A G F ETSAK N+ E +A+ +
Sbjct: 158 PGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREV 195
>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras-
Binding-Domain Of C-Raf1 Kinase (Rafrbd)
Length = 167
Score = 87.0 bits (214), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 90/154 (58%), Gaps = 3/154 (1%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
G GK++L ++FV+G F + + TI ++ QV ++ +I DTAG E++ ++ +Y
Sbjct: 13 GVGKSALTVQFVQGIFVEKYDPTIEDSYRKQV-EVDCQQCMLEILDTAGTEQFTAMRDLY 71
Query: 62 YRGXXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEG 120
+ Y IT+ +F + +++ R + ++ M LV NK DLE++R V E+G
Sbjct: 72 MKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQG 131
Query: 121 E-LYAQENGLSFLETSAKSAHNVNELFYEIAKRL 153
+ L Q +FLE+SAKS NVNE+FY++ +++
Sbjct: 132 QNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165
>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase
Length = 179
Score = 86.7 bits (213), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 81/157 (51%), Gaps = 6/157 (3%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
G GK+SL+ R+V +F TIG F + L ++ + IWDTAGQER+ SL +
Sbjct: 21 GVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPF 80
Query: 62 YRGXXXXXXXYDITSMDSFERAKKWVQELQRQGN---PNLIMFLV-ANKVDLEEKRKVKN 117
YRG + + SF+ W +E + P F++ NK D++E R+V
Sbjct: 81 YRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKTDIKE-RQVST 139
Query: 118 EEGELYAQENG-LSFLETSAKSAHNVNELFYEIAKRL 153
EE + + ++NG + ETSAK + NV F E +R+
Sbjct: 140 EEAQAWCKDNGDYPYFETSAKDSTNVAAAFEEAVRRI 176
>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 176
Score = 86.7 bits (213), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 84/152 (55%), Gaps = 3/152 (1%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
GTGKT+ V R + G+F +T+G V N IKF++WDTAGQE++ L Y
Sbjct: 20 GTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGY 79
Query: 62 YRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGE 121
Y +D+TS +++ W ++L R N+ + L NKVD+++ RKVK +
Sbjct: 80 YIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKD-RKVKAKSIV 137
Query: 122 LYAQENGLSFLETSAKSAHNVNELFYEIAKRL 153
+ ++N L + + SAKS +N + F +A++L
Sbjct: 138 FHRKKN-LQYYDISAKSNYNFEKPFLWLARKL 168
>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp
pdb|3GJ0|B Chain B, Crystal Structure Of Human Rangdp
pdb|3GJ3|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf2 Complex
Length = 221
Score = 86.3 bits (212), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 84/152 (55%), Gaps = 3/152 (1%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
GTGKT+ V R + G+F +T+G V N IKF++WDTAGQE++ L Y
Sbjct: 25 GTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGY 84
Query: 62 YRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGE 121
Y +D+TS +++ W ++L R N+ + L NKVD+++ RKVK +
Sbjct: 85 YIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKD-RKVKAKSIV 142
Query: 122 LYAQENGLSFLETSAKSAHNVNELFYEIAKRL 153
+ ++N L + + SAKS +N + F +A++L
Sbjct: 143 FHRKKN-LQYYDISAKSNYNFEKPFLWLARKL 173
>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|C Chain C, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 216
Score = 86.3 bits (212), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 84/152 (55%), Gaps = 3/152 (1%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
GTGKT+ V R + G+F +T+G V N IKF++WDTAGQE++ L Y
Sbjct: 20 GTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGY 79
Query: 62 YRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGE 121
Y +D+TS +++ W ++L R N+ + L NKVD+++ RKVK +
Sbjct: 80 YIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKD-RKVKAKSIV 137
Query: 122 LYAQENGLSFLETSAKSAHNVNELFYEIAKRL 153
+ ++N L + + SAKS +N + F +A++L
Sbjct: 138 FHRKKN-LQYYDISAKSNYNFEKPFLWLARKL 168
>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|C Chain C, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 204
Score = 85.9 bits (211), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 84/152 (55%), Gaps = 3/152 (1%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
GTGKT+ V R + G+F +T+G V N IKF++WDTAGQE++ L Y
Sbjct: 13 GTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGY 72
Query: 62 YRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGE 121
Y +D+TS +++ W ++L R N+ + L NKVD+++ RKVK +
Sbjct: 73 YIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKD-RKVKAKSIV 130
Query: 122 LYAQENGLSFLETSAKSAHNVNELFYEIAKRL 153
+ ++N L + + SAKS +N + F +A++L
Sbjct: 131 FHRKKN-LQYYDISAKSNYNFEKPFLWLARKL 161
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 85.9 bits (211), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 83/152 (54%), Gaps = 3/152 (1%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
GTGKT+ V R + G+F T+G V N IKF++WDTAGQE++ L Y
Sbjct: 20 GTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGY 79
Query: 62 YRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGE 121
Y +D+TS +++ W ++L R N+ + L NKVD+++ RKVK +
Sbjct: 80 YIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKD-RKVKAKSIV 137
Query: 122 LYAQENGLSFLETSAKSAHNVNELFYEIAKRL 153
+ ++N L + + SAKS +N + F +A++L
Sbjct: 138 FHRKKN-LQYYDISAKSNYNFEKPFLWLARKL 168
>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex
pdb|1A2K|D Chain D, Gdpran-Ntf2 Complex
pdb|1A2K|E Chain E, Gdpran-Ntf2 Complex
pdb|1IBR|A Chain A, Complex Of Ran With Importin Beta
pdb|1IBR|C Chain C, Complex Of Ran With Importin Beta
pdb|1I2M|A Chain A, Ran-Rcc1-So4 Complex
pdb|1I2M|C Chain C, Ran-Rcc1-So4 Complex
pdb|1K5D|A Chain A, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|D Chain D, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|G Chain G, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|J Chain J, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|A Chain A, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|D Chain D, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|G Chain G, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|J Chain J, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|3CH5|A Chain A, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
pdb|3A6P|C Chain C, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|H Chain H, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|4GPT|A Chain A, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|A Chain A, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
pdb|4HAT|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|A Chain A, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
pdb|4HAY|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|A Chain A, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|A Chain A, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 216
Score = 85.9 bits (211), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 84/152 (55%), Gaps = 3/152 (1%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
GTGKT+ V R + G+F +T+G V N IKF++WDTAGQE++ L Y
Sbjct: 20 GTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGY 79
Query: 62 YRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGE 121
Y +D+TS +++ W ++L R N+ + L NKVD+++ RKVK +
Sbjct: 80 YIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKD-RKVKAKSIV 137
Query: 122 LYAQENGLSFLETSAKSAHNVNELFYEIAKRL 153
+ ++N L + + SAKS +N + F +A++L
Sbjct: 138 FHRKKN-LQYYDISAKSNYNFEKPFLWLARKL 168
>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant
Length = 216
Score = 85.9 bits (211), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 84/152 (55%), Gaps = 3/152 (1%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
GTGKT+ V R + G+F +T+G V N IKF++WDTAGQE++ L Y
Sbjct: 20 GTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLEDGY 79
Query: 62 YRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGE 121
Y +D+TS +++ W ++L R N+ + L NKVD+++ RKVK +
Sbjct: 80 YIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKD-RKVKAKSIV 137
Query: 122 LYAQENGLSFLETSAKSAHNVNELFYEIAKRL 153
+ ++N L + + SAKS +N + F +A++L
Sbjct: 138 FHRKKN-LQYYDISAKSNYNFEKPFLWLARKL 168
>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC3|C Chain C, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|A Chain A, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|C Chain C, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
Length = 175
Score = 85.9 bits (211), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 92/153 (60%), Gaps = 2/153 (1%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
G GK++L L+F+ +F + E T ++ +V+ L+ ++ DI DTAG E Y ++ Y
Sbjct: 16 GVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGLEDYAAIRDNY 74
Query: 62 YRGXXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEG 120
+R + IT M+SF + +++ R + + N+ LV NK DLE+KR+V EE
Sbjct: 75 FRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEA 134
Query: 121 ELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 153
+ A++ ++++ETSAK+ NV+++F+++ + +
Sbjct: 135 KNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 167
>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 216
Score = 85.9 bits (211), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 85/152 (55%), Gaps = 3/152 (1%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
GTGKT+ V R + G+F +T+G V N IKF++WDTAGQE++ L Y
Sbjct: 20 GTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGY 79
Query: 62 YRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGE 121
Y +D+TS +++ W ++L R N+ + L NKVD+++ RKVK +
Sbjct: 80 YIQAQCAIIXFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKD-RKVKAKSIV 137
Query: 122 LYAQENGLSFLETSAKSAHNVNELFYEIAKRL 153
+ ++N L + + SAKS +N + F +A++L
Sbjct: 138 FHRKKN-LQYYDISAKSNYNFEKPFLWLARKL 168
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 85.5 bits (210), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 83/152 (54%), Gaps = 3/152 (1%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
GTGKT+ V R + G+F T+G V N IKF++WDTAGQE++ L Y
Sbjct: 20 GTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGY 79
Query: 62 YRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGE 121
Y +D+TS +++ W ++L R N+ + L NKVD+++ RKVK +
Sbjct: 80 YIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKD-RKVKAKSIV 137
Query: 122 LYAQENGLSFLETSAKSAHNVNELFYEIAKRL 153
+ ++N L + + SAKS +N + F +A++L
Sbjct: 138 FHRKKN-LQYYDISAKSNYNFEKPFLWLARKL 168
>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex
Length = 172
Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 85/157 (54%), Gaps = 4/157 (2%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
GTGKT+ V R + G+F +TIG N IKFD+WDTAG E++ L Y
Sbjct: 15 GTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLEKFGGLRDGY 74
Query: 62 YRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGE 121
Y +D+TS +++ W ++L R N+ + L NKVD++E RKVK +
Sbjct: 75 YINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-NIPIVLCGNKVDVKE-RKVKAKTIT 132
Query: 122 LYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVNP 158
+ ++N L + + SAKS +N + F +A++LA NP
Sbjct: 133 FHRKKN-LQYYDISAKSNYNFEKPFLWLARKLAG-NP 167
>pdb|3ICQ|B Chain B, Karyopherin Nuclear State
pdb|3ICQ|C Chain C, Karyopherin Nuclear State
Length = 171
Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 83/153 (54%), Gaps = 3/153 (1%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
GTGKT+ V R + G+F +TIG N IKFD+WDTAG E++ L Y
Sbjct: 14 GTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLEKFGGLRDGY 73
Query: 62 YRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGE 121
Y +D+TS +++ W ++L R N+ + L NKVD++E RKVK +
Sbjct: 74 YINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-NIPIVLCGNKVDVKE-RKVKAKTIT 131
Query: 122 LYAQENGLSFLETSAKSAHNVNELFYEIAKRLA 154
+ ++N L + + SAKS +N + F +A++LA
Sbjct: 132 FHRKKN-LQYYDISAKSNYNFEKPFLWLARKLA 163
>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 219
Score = 84.7 bits (208), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 83/153 (54%), Gaps = 3/153 (1%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
GTGKT+ V R + G+F +TIG N IKFD+WDTAG E++ L Y
Sbjct: 22 GTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLEKFGGLRDGY 81
Query: 62 YRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGE 121
Y +D+TS +++ W ++L R N+ + L NKVD++E RKVK +
Sbjct: 82 YINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-NIPIVLCGNKVDVKE-RKVKAKTIT 139
Query: 122 LYAQENGLSFLETSAKSAHNVNELFYEIAKRLA 154
+ ++N L + + SAKS +N + F +A++LA
Sbjct: 140 FHRKKN-LQYYDISAKSNYNFEKPFLWLARKLA 171
>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex
Length = 182
Score = 84.0 bits (206), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 83/152 (54%), Gaps = 3/152 (1%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
GTGKT+ V R + G+F +T+G V N IKF++WDTAG E++ L Y
Sbjct: 22 GTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLEKFGGLRDGY 81
Query: 62 YRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGE 121
Y +D+TS +++ W ++L R N+ + L NKVD+++ RKVK +
Sbjct: 82 YIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKD-RKVKAKSIV 139
Query: 122 LYAQENGLSFLETSAKSAHNVNELFYEIAKRL 153
+ ++N L + + SAKS +N + F +A++L
Sbjct: 140 FHRKKN-LQYYDISAKSNYNFEKPFLWLARKL 170
>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|F Chain F, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NBZ|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NC0|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC0|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
Length = 176
Score = 84.0 bits (206), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 83/152 (54%), Gaps = 3/152 (1%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
GTGKT+ V R + G+F +T+G V N IKF++WDTAG E++ L Y
Sbjct: 16 GTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLEKFGGLRDGY 75
Query: 62 YRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGE 121
Y +D+TS +++ W ++L R N+ + L NKVD+++ RKVK +
Sbjct: 76 YIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKD-RKVKAKSIV 133
Query: 122 LYAQENGLSFLETSAKSAHNVNELFYEIAKRL 153
+ ++N L + + SAKS +N + F +A++L
Sbjct: 134 FHRKKN-LQYYDISAKSNYNFEKPFLWLARKL 164
>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|C Chain C, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|D Chain D, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|B Chain B, Canine Gdp-Ran Q69l Mutant
pdb|3GJX|C Chain C, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|F Chain F, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
Length = 216
Score = 83.2 bits (204), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 83/152 (54%), Gaps = 3/152 (1%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
GTGKT+ V R + G+F +T+G V N IKF++WDTAG E++ L Y
Sbjct: 20 GTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLEKFGGLRDGY 79
Query: 62 YRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGE 121
Y +D+TS +++ W ++L R N+ + L NKVD+++ RKVK +
Sbjct: 80 YIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKD-RKVKAKSIV 137
Query: 122 LYAQENGLSFLETSAKSAHNVNELFYEIAKRL 153
+ ++N L + + SAKS +N + F +A++L
Sbjct: 138 FHRKKN-LQYYDISAKSNYNFEKPFLWLARKL 168
>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DST|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSU|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSN|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
Length = 189
Score = 82.8 bits (203), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 83/153 (54%), Gaps = 3/153 (1%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
G GK++L ++ ++ F D + TI ++ QV+ E T DI DTAGQE Y ++ Y
Sbjct: 14 GVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEEYSAMRDQY 72
Query: 62 YRGXXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEG 120
R + I + SFE + ++++R + + ++ M LV NK DL R V ++
Sbjct: 73 MRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL-PSRTVDTKQA 131
Query: 121 ELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 153
+ A+ G+ F+ETSAK+ V++ FY + + +
Sbjct: 132 QDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164
>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ4|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ5|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ5|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ6|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf1 Complex
pdb|3GJ7|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ7|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ8|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
pdb|3GJ8|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
Length = 221
Score = 82.8 bits (203), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 83/152 (54%), Gaps = 3/152 (1%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
GTGKT+ V R + G+ +T+G V N IKF++WDTAGQE++ L Y
Sbjct: 25 GTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGY 84
Query: 62 YRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGE 121
Y +D+TS +++ W ++L R N+ + L NKVD+++ RKVK +
Sbjct: 85 YIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKD-RKVKAKSIV 142
Query: 122 LYAQENGLSFLETSAKSAHNVNELFYEIAKRL 153
+ ++N L + + SAKS +N + F +A++L
Sbjct: 143 FHRKKN-LQYYDISAKSNYNFEKPFLWLARKL 173
>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex
Length = 178
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 89/154 (57%), Gaps = 3/154 (1%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
G GK++L L+F+ +F + E T ++ +V+ L+ ++ DI DTAG E Y ++ Y
Sbjct: 17 GVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGLEDYAAIRDNY 75
Query: 62 YRGXXXXXXXYDITSMDSFERAKKWVQELQR--QGNPNLIMFLVANKVDLEEKRKVKNEE 119
+R + IT +SF ++ +++ R + + +V NK DLEE+R+V EE
Sbjct: 76 FRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEERRQVPVEE 135
Query: 120 GELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 153
A+E G+ ++ETSAK+ NV+++F+++ + +
Sbjct: 136 ARSKAEEWGVQYVETSAKTRANVDKVFFDLMREI 169
>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb
In Its Active Conformation: Significance For Effector
Protein Binding
Length = 174
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 89/154 (57%), Gaps = 3/154 (1%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
G GK++L L+F+ +F + E T ++ +V+ L+ ++ DI DTAG E Y ++ Y
Sbjct: 13 GVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGLEDYAAIRDNY 71
Query: 62 YRGXXXXXXXYDITSMDSFERAKKWVQELQR--QGNPNLIMFLVANKVDLEEKRKVKNEE 119
+R + IT +SF ++ +++ R + + +V NK DLEE+R+V EE
Sbjct: 72 FRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEERRQVPVEE 131
Query: 120 GELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 153
A+E G+ ++ETSAK+ NV+++F+++ + +
Sbjct: 132 ARSKAEEWGVQYVETSAKTRANVDKVFFDLMREI 165
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 83/171 (48%), Gaps = 19/171 (11%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNE----------VTIKFDIWDTAGQ 51
G GKT+ + R+ +F +T+G F + + N + +WDTAGQ
Sbjct: 35 GVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQ 94
Query: 52 ERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQG---NPNLIMFLVANKVD 108
ER+ SL ++R +D+TS SF + W+ +LQ NP+++ L+ NK D
Sbjct: 95 ERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV--LIGNKAD 152
Query: 109 LEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNE----LFYEIAKRLAE 155
L ++R+V + A + G+ + ETSA + NV + L I KR+ +
Sbjct: 153 LPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMKRMEQ 203
>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 81.6 bits (200), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 83/153 (54%), Gaps = 3/153 (1%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
G GK++L ++ ++ F D + TI ++ QV+ E T DI DTAGQE Y ++ Y
Sbjct: 14 GVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEEYSAMRDQY 72
Query: 62 YRGXXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEG 120
R + I + SFE + ++++R + + ++ M LV NK DL R V ++
Sbjct: 73 MRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDL-PSRTVDTKQA 131
Query: 121 ELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 153
+ A+ G+ F+ETSAK+ V++ FY + + +
Sbjct: 132 QDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164
>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a
pdb|3BC1|E Chain E, Crystal Structure Of The Complex Rab27a-slp2a
Length = 195
Score = 81.3 bits (199), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 85/169 (50%), Gaps = 19/169 (11%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQ--VLSLNEVT--------IKFDIWDTAGQ 51
G GKTS++ ++ G+F +T+G F + V N I +WDTAG
Sbjct: 21 GVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGL 80
Query: 52 ERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQG---NPNLIMFLVANKVD 108
ER+ SL ++R +D+T+ SF + W+ +LQ NP+++ L NK D
Sbjct: 81 ERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIV--LCGNKSD 138
Query: 109 LEEKRKVKNEEGELYAQENGLSFLETSAKS----AHNVNELFYEIAKRL 153
LE++R VK EE A++ G+ + ETSA + +H + L I KR+
Sbjct: 139 LEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLDLIMKRM 187
>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1JAI|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Manganese
pdb|1PLJ|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|1PLL|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|821P|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Glycine-12 Mutant Of
P21h-Ras
Length = 166
Score = 81.3 bits (199), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 84/153 (54%), Gaps = 3/153 (1%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
G GK++L ++ ++ F D + TI ++ QV+ E T DI DTAGQE Y ++ Y
Sbjct: 13 GVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEEYSAMRDQY 71
Query: 62 YRGXXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEG 120
R + I + SFE ++ ++++R + + ++ M LV NK DL R V++ +
Sbjct: 72 MRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQA 130
Query: 121 ELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 153
+ A+ G+ ++ETSAK+ V + FY + + +
Sbjct: 131 QDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 81.3 bits (199), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 84/153 (54%), Gaps = 3/153 (1%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
G GK++L ++ ++ F D + TI ++ QV+ E T DI DTAGQE Y ++ Y
Sbjct: 13 GVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEEYSAMRDQY 71
Query: 62 YRGXXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEG 120
R + I + SFE ++ ++++R + + ++ M LV NK DL R V++ +
Sbjct: 72 MRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQA 130
Query: 121 ELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 153
+ A+ G+ ++ETSAK+ V + FY + + +
Sbjct: 131 QDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Gly-12 Mutant Of
P21-H-Ras
Length = 166
Score = 81.3 bits (199), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 84/153 (54%), Gaps = 3/153 (1%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
G GK++L ++ ++ F D + TI ++ QV+ E T DI DTAGQE Y ++ Y
Sbjct: 13 GVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEEYSAMRDQY 71
Query: 62 YRGXXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEG 120
R + I + SFE ++ ++++R + + ++ M LV NK DL R V++ +
Sbjct: 72 MRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQA 130
Query: 121 ELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 153
+ A+ G+ ++ETSAK+ V + FY + + +
Sbjct: 131 QDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
Length = 189
Score = 80.9 bits (198), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 90/165 (54%), Gaps = 8/165 (4%)
Query: 5 KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 64
K++L ++ ++ F D + TI ++ QV+ E T DI DTAGQE Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 65 XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 123
+ I + SFE ++ ++++R + + ++ M LV NK DL R V++ + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 124 AQENGLSFLETSAKSAHNVNELFYEIAK-----RLAEVNPSRQTG 163
A+ G+ ++ETSAK+ V + FY + + +L ++NP ++G
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQHKLRKLNPPDESG 178
>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Magnesium
pdb|1PLK|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
Length = 166
Score = 80.9 bits (198), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 84/153 (54%), Gaps = 3/153 (1%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
G GK++L ++ ++ F D + TI ++ QV+ E T DI DTAGQE Y ++ Y
Sbjct: 13 GVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEEYSAMRDQY 71
Query: 62 YRGXXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEG 120
R + I + SFE ++ ++++R + + ++ M LV NK DL R V++ +
Sbjct: 72 MRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AGRTVESRQA 130
Query: 121 ELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 153
+ A+ G+ ++ETSAK+ V + FY + + +
Sbjct: 131 QDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
pdb|2ERX|B Chain B, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
Length = 172
Score = 80.5 bits (197), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 53/150 (35%), Positives = 79/150 (52%), Gaps = 3/150 (2%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
G GK+SLVLRFVKG F + T+ + QV+S ++ I DT G ++ ++ +
Sbjct: 13 GVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSHQFPAMQRLS 71
Query: 62 YRGXXXXXXXYDITSMDSFERAKKWVQEL-QRQGNPNLI-MFLVANKVDLEEKRKVKNEE 119
Y ITS S E K +++ + +G+ I + LV NK D R+V++ E
Sbjct: 72 ISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSE 131
Query: 120 GELYAQENGLSFLETSAKSAHNVNELFYEI 149
E A+ +F+ETSAK HNV ELF E+
Sbjct: 132 AEALARTWKCAFMETSAKLNHNVKELFQEL 161
>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
pdb|4DJT|B Chain B, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
Length = 218
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 76/151 (50%), Gaps = 1/151 (0%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAA-FFTQVLSLNEVTIKFDIWDTAGQERYHSLAPM 60
G GKT+ + R + G+F +T+GA L IKF++WDTAGQE+ L +
Sbjct: 21 GVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDV 80
Query: 61 YYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEG 120
YY G +D+TS + + +WV+E Q + + ANK+D++ ++K+ +
Sbjct: 81 YYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLV 140
Query: 121 ELYAQENGLSFLETSAKSAHNVNELFYEIAK 151
+ + E SAK+AHN F +A+
Sbjct: 141 MEVLKGKNYEYFEISAKTAHNFGLPFLHLAR 171
>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|H Chain H, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|I Chain I, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 220
Score = 78.2 bits (191), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 82/169 (48%), Gaps = 19/169 (11%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVL----------SLNEVTIKFDIWDTAGQ 51
G GKT+ + R+ +F +T+G F + + S + +WDTAG
Sbjct: 21 GVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHLQLWDTAGL 80
Query: 52 ERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQG---NPNLIMFLVANKVD 108
ER+ SL ++R +D+TS SF + W+ +LQ NP+++ L+ NK D
Sbjct: 81 ERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV--LIGNKAD 138
Query: 109 LEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNE----LFYEIAKRL 153
L ++R+V + A++ G+ + ETSA + NV + L I KR+
Sbjct: 139 LPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIMKRM 187
>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IF0|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 200
Score = 78.2 bits (191), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 82/169 (48%), Gaps = 19/169 (11%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVL----------SLNEVTIKFDIWDTAGQ 51
G GKT+ + R+ +F +T+G F + + S + +WDTAG
Sbjct: 21 GVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHLQLWDTAGL 80
Query: 52 ERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQG---NPNLIMFLVANKVD 108
ER+ SL ++R +D+TS SF + W+ +LQ NP+++ L+ NK D
Sbjct: 81 ERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV--LIGNKAD 138
Query: 109 LEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNE----LFYEIAKRL 153
L ++R+V + A++ G+ + ETSA + NV + L I KR+
Sbjct: 139 LPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIMKRM 187
>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive
(Gdp-3'p- Bound) Form
pdb|3E5H|A Chain A, Crystal Structure Of Rab28 Gtpase In The Active
(Gppnhp-Bound) Form
Length = 178
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 79/162 (48%), Gaps = 4/162 (2%)
Query: 3 TGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSL-NEVTIKFDIWDTAGQERYHSLAPMY 61
+GKTSL F + F + TIG FF + ++L + + IWD GQ + Y
Sbjct: 17 SGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKY 76
Query: 62 YRGXXXXXXXYDITSMDSFERAKKW---VQELQRQGNPNLIMFLVANKVDLEEKRKVKNE 118
G YDIT+ SFE + W V+++ + ++ LV NK+DLE R +K E
Sbjct: 77 IYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPE 136
Query: 119 EGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVNPSR 160
+ + QENG S SAK+ +V F ++A + + ++
Sbjct: 137 KHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILGIKLNK 178
>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
pdb|2ERY|B Chain B, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
Length = 172
Score = 77.8 bits (190), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 83/148 (56%), Gaps = 2/148 (1%)
Query: 5 KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 64
K++L ++F++ F + TI ++ Q + +++ + DI DTAGQE + ++ Y R
Sbjct: 18 KSALTIQFIQSYFVTDYDPTIEDSYTKQCV-IDDRAARLDILDTAGQEEFGAMREQYMRT 76
Query: 65 XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 123
+ +T SFE K+ +++ R + M L+ NK DL+ +R+V EEG+
Sbjct: 77 GEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQL 136
Query: 124 AQENGLSFLETSAKSAHNVNELFYEIAK 151
A++ ++++E SAK NV++ F+E+ +
Sbjct: 137 ARQLKVTYMEASAKIRMNVDQAFHELVR 164
>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By
Isoleucine
Length = 166
Score = 77.0 bits (188), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 83/150 (55%), Gaps = 3/150 (2%)
Query: 5 KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 64
K++L ++ ++ F D + TI ++ QV+ E+ + DI DTAGQE Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGEICL-LDILDTAGQEEYSAMRDQYMRT 74
Query: 65 XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 123
+ I + SFE ++ ++++R + + ++ M LV NK DL R V++ + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 124 AQENGLSFLETSAKSAHNVNELFYEIAKRL 153
A+ G+ ++ETSAK+ V + FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras
pdb|2C5L|B Chain B, Structure Of Plc Epsilon Ras Association Domain With Hras
Length = 173
Score = 77.0 bits (188), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 82/150 (54%), Gaps = 3/150 (2%)
Query: 5 KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 64
K++L ++ ++ F D + TI ++ QV+ E T DI DTAGQE Y ++ Y R
Sbjct: 23 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEEYSAMRDQYMRT 81
Query: 65 XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 123
+ I + SFE ++ ++++R + + ++ M LV NK DL R V++ + +
Sbjct: 82 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 140
Query: 124 AQENGLSFLETSAKSAHNVNELFYEIAKRL 153
A+ G+ ++ETSAK+ V + FY + + +
Sbjct: 141 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 170
>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
pdb|2IEY|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
Length = 195
Score = 76.6 bits (187), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 77/154 (50%), Gaps = 15/154 (9%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVL----------SLNEVTIKFDIWDTAGQ 51
G GKT+ + R+ +F +T+G F + + S + +WDTAG
Sbjct: 21 GVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHLQLWDTAGL 80
Query: 52 ERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQG---NPNLIMFLVANKVD 108
ER+ SL ++R +D+TS SF + W +LQ NP+++ L+ NK D
Sbjct: 81 ERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPDIV--LIGNKAD 138
Query: 109 LEEKRKVKNEEGELYAQENGLSFLETSAKSAHNV 142
L ++R+V + A++ G+ + ETSA + NV
Sbjct: 139 LPDQREVNERQARELAEKYGIPYFETSAATGQNV 172
>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
pdb|2ZET|B Chain B, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
Length = 203
Score = 76.6 bits (187), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 77/154 (50%), Gaps = 15/154 (9%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVL----------SLNEVTIKFDIWDTAGQ 51
G GKT+ + R+ +F +T+G F + + S + +WDTAG
Sbjct: 21 GVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHLQLWDTAGL 80
Query: 52 ERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQG---NPNLIMFLVANKVD 108
ER+ SL ++R +D+TS SF + W +LQ NP+++ L+ NK D
Sbjct: 81 ERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPDIV--LIGNKAD 138
Query: 109 LEEKRKVKNEEGELYAQENGLSFLETSAKSAHNV 142
L ++R+V + A++ G+ + ETSA + NV
Sbjct: 139 LPDQREVNERQARELAEKYGIPYFETSAATGQNV 172
>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1
Length = 201
Score = 76.6 bits (187), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 84/158 (53%), Gaps = 2/158 (1%)
Query: 3 TGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYY 62
GKTSL +FV+G+F + + T+ + +++++L + + DTAGQ+ Y L +
Sbjct: 35 VGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFI 93
Query: 63 RGXXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGE 121
G Y +TS+ SF+ + Q+L G + + LV NK DL +R+V+ EG+
Sbjct: 94 IGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGK 153
Query: 122 LYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVNPS 159
A+ G +F+E+SA+ +F ++ + +A V S
Sbjct: 154 KLAESWGATFMESSARENQLTQGIFTKVIQEIARVENS 191
>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp
(State 1)
Length = 171
Score = 76.3 bits (186), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 82/150 (54%), Gaps = 3/150 (2%)
Query: 5 KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 64
K++L ++ ++ F D + TI ++ QV+ E T DI DTAGQE Y ++ Y R
Sbjct: 21 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEEYSAMRDQYMRT 79
Query: 65 XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 123
+ I + SFE ++ ++++R + + ++ M LV NK DL R V++ + +
Sbjct: 80 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 138
Query: 124 AQENGLSFLETSAKSAHNVNELFYEIAKRL 153
A+ G+ ++ETSAK+ V + FY + + +
Sbjct: 139 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 168
>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp
(State 1)
Length = 171
Score = 76.3 bits (186), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 82/150 (54%), Gaps = 3/150 (2%)
Query: 5 KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 64
K++L ++ ++ F D + TI ++ QV+ E T DI DTAGQE Y ++ Y R
Sbjct: 21 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEEYSAMRDQYMRT 79
Query: 65 XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 123
+ I + SFE ++ ++++R + + ++ M LV NK DL R V++ + +
Sbjct: 80 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 138
Query: 124 AQENGLSFLETSAKSAHNVNELFYEIAKRL 153
A+ G+ ++ETSAK+ V + FY + + +
Sbjct: 139 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 168
>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPY|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 76.3 bits (186), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 81/150 (54%), Gaps = 3/150 (2%)
Query: 5 KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 64
K++L ++ ++ F D + TI ++ QV+ E T DI DTAGQE Y ++ Y R
Sbjct: 17 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEEYSAMRDQYMRT 75
Query: 65 XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 123
+ I + SFE + ++++R + + ++ M LV NK DL R V ++ +
Sbjct: 76 GEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDL-PSRTVDTKQAQDL 134
Query: 124 AQENGLSFLETSAKSAHNVNELFYEIAKRL 153
A+ G+ F+ETSAK+ V++ FY + + +
Sbjct: 135 ARSYGIPFIETSAKTRQGVDDAFYTLVREI 164
>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPV|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPW|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 76.3 bits (186), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 81/150 (54%), Gaps = 3/150 (2%)
Query: 5 KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 64
K++L ++ ++ F D + TI ++ QV+ E T DI DTAGQE Y ++ Y R
Sbjct: 17 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEEYSAMRDQYMRT 75
Query: 65 XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 123
+ I + SFE + ++++R + + ++ M LV NK DL R V ++ +
Sbjct: 76 GEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDL-PSRTVDTKQAQDL 134
Query: 124 AQENGLSFLETSAKSAHNVNELFYEIAKRL 153
A+ G+ F+ETSAK+ V++ FY + + +
Sbjct: 135 ARSYGIPFIETSAKTRQGVDDAFYTLVREI 164
>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State
Length = 196
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 82/156 (52%), Gaps = 8/156 (5%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
G GK++LV+RF+ +F + T+ + + Q ++++ + +I DTAGQE +
Sbjct: 38 GVGKSALVVRFLTKRFIWEYDPTLESTYRHQA-TIDDEVVSMEILDTAGQEDTIQREG-H 95
Query: 62 YRGXXXXXXXYDITSMDSFERA---KKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNE 118
R YDIT SFE K + E+++ N LI LV NK DL+ R+V E
Sbjct: 96 MRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLI--LVGNKADLDHSRQVSTE 153
Query: 119 EGELYAQENGLSFLETSAKSAH-NVNELFYEIAKRL 153
EGE A E +F E SA + N+ E+FYE+ + +
Sbjct: 154 EGEKLATELACAFYECSACTGEGNITEIFYELCREV 189
>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 82/150 (54%), Gaps = 3/150 (2%)
Query: 5 KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 64
K++L ++ ++ F D + TI ++ QV+ E T DI DTAGQE Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEESYRKQVVIDGE-TCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 65 XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 123
+ I + SFE ++ ++++R + + ++ M LV NK DL R V++ + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 124 AQENGLSFLETSAKSAHNVNELFYEIAKRL 153
A+ G+ ++ETSAK+ V + FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
pdb|1LFD|D Chain D, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
Length = 167
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 82/150 (54%), Gaps = 3/150 (2%)
Query: 5 KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 64
K++L ++ ++ F D + TI ++ QV+ E T DI DTAGQE Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDKYDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 65 XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 123
+ I + SFE ++ ++++R + + ++ M LV NK DL R V++ + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 124 AQENGLSFLETSAKSAHNVNELFYEIAKRL 153
A+ G+ ++ETSAK+ V + FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1WQ1|R Chain R, Ras-Rasgap Complex
pdb|1BKD|R Chain R, Complex Of Human H-Ras With Human Sos-1
pdb|1CTQ|A Chain A, Structure Of P21ras In Complex With Gppnhp At 100 K
pdb|1QRA|A Chain A, Structure Of P21ras In Complex With Gtp At 100 K
pdb|1K8R|A Chain A, Crystal Structure Of Ras-Bry2rbd Complex
pdb|1NVV|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1P2S|A Chain A, H-Ras 166 In 50% 2,2,2 Triflouroethanol
pdb|1P2T|A Chain A, H-Ras 166 In Aqueous Mother Liqour, Rt
pdb|1P2U|A Chain A, H-Ras In 50% Isopropanol
pdb|1P2V|A Chain A, H-Ras 166 In 60 % 1,6 Hexanediol
pdb|1XD2|B Chain B, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
pdb|121P|A Chain A, Struktur Und Guanosintriphosphat-Hydrolysemechanismus Des
C- Terminal Verkuerzten Menschlichen Krebsproteins
P21-H-Ras
pdb|1CRP|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRQ|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRR|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1GNP|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNQ|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNR|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|5P21|A Chain A, Refined Crystal Structure Of The Triphosphate Conformation
Of H-Ras P21 At 1.35 Angstroms Resolution: Implications
For The Mechanism Of Gtp Hydrolysis
pdb|2RGE|A Chain A, Crystal Structure Of H-Ras-Gppnhp
pdb|3K8Y|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3LBH|A Chain A, Ras Soaked In Calcium Acetate
pdb|3LBI|A Chain A, Ras Soaked In Magnesium Acetate And Back Soaked In Calcium
A
pdb|3LBN|A Chain A, Ras Soaked In Magnesium Acetate
pdb|3KUD|A Chain A, Complex Of Ras-Gdp With Rafrbd(A85k)
pdb|3L8Y|A Chain A, Complex Of Ras With Cyclen
pdb|3L8Z|A Chain A, H-Ras Wildtype New Crystal Form
pdb|3RRY|A Chain A, H-Ras Crosslinked Control, Soaked In Aqueous Solution: One
Of 10 In Mscs Set
pdb|3RRZ|A Chain A, H-Ras In 70% Glycerol: One Of 10 In Mscs Set
pdb|3RS0|A Chain A, H-Ras Soaked In Neat Cyclopentanol: One Of 10 In Mscs Set
pdb|3RS2|A Chain A, H-Ras Soaked In 50% 2,2,2-Trifluoroethanol: One Of 10 In
Mscs Set
pdb|3RS3|A Chain A, H-Ras Soaked In Neat Hexane: 1 Of 10 In Mscs Set
pdb|3RS4|A Chain A, H-Ras Soaked In 60% 1,6-Hexanediol: 1 Of 10 In Mscs Set
pdb|3RS5|A Chain A, H-Ras Soaked In 55% Dimethylformamide: 1 Of 10 In Mscs Set
pdb|3RS7|A Chain A, H-Ras Soaked In 50% Isopropanol: 1 Of 10 In Mscs Set
pdb|3RSL|A Chain A, H-Ras Soaked In 90% R,S,R-Bisfuranol: One Of 10 In Mscs
Set
pdb|3RSO|A Chain A, H-Ras Soaked In 20% S,R,S-Bisfuranol: 1 Of 10 In Mscs Set
pdb|3TGP|A Chain A, Room Temperature H-Ras
pdb|4DLS|A Chain A, H-Ras Set 1 Cacl2 'mixed'
pdb|4DLT|A Chain A, H-Ras Set 2 Ca(Oac)2, On
pdb|4DLU|A Chain A, H-Ras Set 1 Ca(Oac)2, On
pdb|4DLW|A Chain A, H-Ras Set 2 Ca(Oac)2DTT, ON
Length = 166
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 82/150 (54%), Gaps = 3/150 (2%)
Query: 5 KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 64
K++L ++ ++ F D + TI ++ QV+ E T DI DTAGQE Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 65 XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 123
+ I + SFE ++ ++++R + + ++ M LV NK DL R V++ + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 124 AQENGLSFLETSAKSAHNVNELFYEIAKRL 153
A+ G+ ++ETSAK+ V + FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1HE8|B Chain B, Ras G12v-Pi 3-Kinase Gamma Complex
pdb|2UZI|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv Complex
pdb|2VH5|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv (Disulfide
Free Mutant) Complex
pdb|3OIV|A Chain A, H-Rasg12v With Allosteric Switch In The "off" State
pdb|3OIW|A Chain A, H-Rasg12v With Allosteric Switch In The "on" State
Length = 166
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 82/150 (54%), Gaps = 3/150 (2%)
Query: 5 KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 64
K++L ++ ++ F D + TI ++ QV+ E T DI DTAGQE Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 65 XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 123
+ I + SFE ++ ++++R + + ++ M LV NK DL R V++ + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 124 AQENGLSFLETSAKSAHNVNELFYEIAKRL 153
A+ G+ ++ETSAK+ V + FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|B Chain B, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|C Chain C, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|D Chain D, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|1IOZ|A Chain A, Crystal Structure Of The C-Ha-Ras Protein Prepared By The
Cell-Free Synthesis
pdb|1AA9|A Chain A, Human C-Ha-Ras(1-171)(Dot)gdp, Nmr, Minimized Average
Structure
pdb|1Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 75.5 bits (184), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 82/150 (54%), Gaps = 3/150 (2%)
Query: 5 KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 64
K++L ++ ++ F D + TI ++ QV+ E T DI DTAGQE Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 65 XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 123
+ I + SFE ++ ++++R + + ++ M LV NK DL R V++ + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 124 AQENGLSFLETSAKSAHNVNELFYEIAKRL 153
A+ G+ ++ETSAK+ V + FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 75.5 bits (184), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 82/150 (54%), Gaps = 3/150 (2%)
Query: 5 KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 64
K++L ++ ++ F D + TI ++ QV+ E T DI DTAGQE Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 65 XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 123
+ I + SFE ++ ++++R + + ++ M LV NK DL R V++ + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 124 AQENGLSFLETSAKSAHNVNELFYEIAKRL 153
A+ G+ ++ETSAK+ V + FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The
Effector Domain Of The Protein Kinase PknPRK1
pdb|1A2B|A Chain A, Human Rhoa Complexed With Gtp Analogue
Length = 182
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 80/168 (47%), Gaps = 17/168 (10%)
Query: 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPM 60
+ GKT L++ F K QF + T+ + + ++ ++ +WDTAGQE Y L P+
Sbjct: 15 VACGKTCLLIVFSKDQFPEVYVPTVFENYVADI-EVDGKQVELALWDTAGQEDYDRLRPL 73
Query: 61 YYRGXXXXXXXYDITSMDSFER-AKKWVQELQRQGNPNLIMFLVANKVDLE--------- 110
Y + I S DS E +KW E+ + PN+ + LV NK DL
Sbjct: 74 SYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRNDEHTRREL 132
Query: 111 ---EKRKVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYEIAKRLA 154
++ VK EEG A G ++E SAK+ V E+F E+A R A
Sbjct: 133 AKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-EMATRAA 179
>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|B Chain B, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|C Chain C, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|D Chain D, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|E Chain E, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|F Chain F, Human K-Ras In Complex With A Gtp Analogue
Length = 187
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 80/150 (53%), Gaps = 3/150 (2%)
Query: 5 KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 64
K++L ++ ++ F D + TI ++ QV+ E T DI DTAG E Y ++ Y R
Sbjct: 34 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGHEEYSAMRDQYMRT 92
Query: 65 XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 123
+ I + SFE + ++++R + + ++ M LV NK DL R V ++ +
Sbjct: 93 GEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLP-SRTVDTKQAQDL 151
Query: 124 AQENGLSFLETSAKSAHNVNELFYEIAKRL 153
A+ G+ F+ETSAK+ V++ FY + + +
Sbjct: 152 ARSYGIPFIETSAKTRQGVDDAFYTLVREI 181
>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex
pdb|3TVD|B Chain B, Crystal Structure Of Mouse Rhoa-Gtp Complex
Length = 193
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 79/167 (47%), Gaps = 17/167 (10%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
GKT L++ F K QF + T+ + + ++ ++ +WDTAGQE Y L P+
Sbjct: 15 ACGKTCLLIVFSKDQFPEVYVPTVFENYVADI-EVDGKQVELALWDTAGQEDYDRLRPLS 73
Query: 62 YRGXXXXXXXYDITSMDSFER-AKKWVQELQRQGNPNLIMFLVANKVDLE---------- 110
Y + I S DS E +KW E+ + PN+ + LV NK DL
Sbjct: 74 YPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRNDEHTRRELA 132
Query: 111 --EKRKVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYEIAKRLA 154
++ VK EEG A G ++E SAK+ V E+F E+A R A
Sbjct: 133 KMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-EMATRAA 178
>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex
With Rhogdi In Its Active Gppnhp-Bound Form
Length = 195
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 79/167 (47%), Gaps = 17/167 (10%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
GKT L++ F K QF + T+ + + ++ ++ +WDTAGQE Y L P+
Sbjct: 17 ACGKTCLLIVFSKDQFPEVYVPTVFENYVADI-EVDGKQVELALWDTAGQEDYDRLRPLS 75
Query: 62 YRGXXXXXXXYDITSMDSFER-AKKWVQELQRQGNPNLIMFLVANKVDLE---------- 110
Y + I S DS E +KW E+ + PN+ + LV NK DL
Sbjct: 76 YPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRNDEHTRRELA 134
Query: 111 --EKRKVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYEIAKRLA 154
++ VK EEG A G ++E SAK+ V E+F E+A R A
Sbjct: 135 KMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-EMATRAA 180
>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
pdb|1S1C|B Chain B, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
Length = 183
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 79/167 (47%), Gaps = 17/167 (10%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
GKT L++ F K QF + T+ + + ++ ++ +WDTAGQE Y L P+
Sbjct: 17 ACGKTCLLIVFSKDQFPEVYVPTVFENYVADI-EVDGKQVELALWDTAGQEDYDRLRPLS 75
Query: 62 YRGXXXXXXXYDITSMDSFER-AKKWVQELQRQGNPNLIMFLVANKVDLE---------- 110
Y + I S DS E +KW E+ + PN+ + LV NK DL
Sbjct: 76 YPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRNDEHTRRELA 134
Query: 111 --EKRKVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYEIAKRLA 154
++ VK EEG A G ++E SAK+ V E+F E+A R A
Sbjct: 135 KMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-EMATRAA 180
>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|C Chain C, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|D Chain D, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LWN|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LWN|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LXR|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa And Gdp (Complex
C)
Length = 185
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 79/167 (47%), Gaps = 17/167 (10%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
GKT L++ F K QF + T+ + + ++ ++ +WDTAGQE Y L P+
Sbjct: 19 ACGKTCLLIVFSKDQFPEVYVPTVFENYVADI-EVDGKQVELALWDTAGQEDYDRLRPLS 77
Query: 62 YRGXXXXXXXYDITSMDSFER-AKKWVQELQRQGNPNLIMFLVANKVDLE---------- 110
Y + I S DS E +KW E+ + PN+ + LV NK DL
Sbjct: 78 YPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRNDEHTRRELA 136
Query: 111 --EKRKVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYEIAKRLA 154
++ VK EEG A G ++E SAK+ V E+F E+A R A
Sbjct: 137 KMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-EMATRAA 182
>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|C Chain C, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|E Chain E, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
Length = 166
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 81/150 (54%), Gaps = 3/150 (2%)
Query: 5 KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 64
K +L ++ ++ F D + TI ++ QV+ E T DI DTAGQE Y ++ Y R
Sbjct: 16 KNALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 65 XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 123
+ I + SFE ++ ++++R + + ++ M LV NK DL R V++ + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 124 AQENGLSFLETSAKSAHNVNELFYEIAKRL 153
A+ G+ ++ETSAK+ V + FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
pdb|3KZ1|F Chain F, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
Length = 182
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 79/167 (47%), Gaps = 17/167 (10%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
GKT L++ F K QF + T+ + + ++ ++ +WDTAGQE Y L P+
Sbjct: 16 ACGKTCLLIVFSKDQFPEVYVPTVFENYVADI-EVDGKQVELALWDTAGQEDYDRLRPLS 74
Query: 62 YRGXXXXXXXYDITSMDSFER-AKKWVQELQRQGNPNLIMFLVANKVDLE---------- 110
Y + I S DS E +KW E+ + PN+ + LV NK DL
Sbjct: 75 YPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRNDEHTRRELA 133
Query: 111 --EKRKVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYEIAKRLA 154
++ VK EEG A G ++E SAK+ V E+F E+A R A
Sbjct: 134 KMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-EMATRAA 179
>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|D Chain D, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|F Chain F, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|H Chain H, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|2RGN|C Chain C, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|F Chain F, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 196
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 79/167 (47%), Gaps = 17/167 (10%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
GKT L++ F K QF + T+ + + ++ ++ +WDTAGQE Y L P+
Sbjct: 18 ACGKTCLLIVFSKDQFPEVYVPTVFENYVADI-EVDGKQVELALWDTAGQEDYDRLRPLS 76
Query: 62 YRGXXXXXXXYDITSMDSFER-AKKWVQELQRQGNPNLIMFLVANKVDLE---------- 110
Y + I S DS E +KW E+ + PN+ + LV NK DL
Sbjct: 77 YPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRNDEHTRRELA 135
Query: 111 --EKRKVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYEIAKRLA 154
++ VK EEG A G ++E SAK+ V E+F E+A R A
Sbjct: 136 KMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-EMATRAA 181
>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF
pdb|4DLR|A Chain A, H-Ras Peg 400CA(OAC)2, ORDERED OFF
pdb|4DLV|A Chain A, H-Ras Set 2 Cacl2DTT, ORDERED OFF
pdb|4DLX|A Chain A, H-Ras Set 1 Cacl2DTE, ORDERED OFF
pdb|4DLY|A Chain A, Set 1 Cacl2DTT, ORDERED OFF
pdb|4DLZ|A Chain A, H-Ras Set 2 Ca(Oac)2DTE, ORDERED OFF
Length = 166
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 82/150 (54%), Gaps = 3/150 (2%)
Query: 5 KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 64
K++L ++ ++ F D + TI ++ QV+ E T DI DTAGQE Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEEYSAMRDEYMRT 74
Query: 65 XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 123
+ I + SFE ++ ++++R + + ++ M LV NK DL R V++ + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 124 AQENGLSFLETSAKSAHNVNELFYEIAKRL 153
A+ G+ ++ETSAK+ V + FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gppnhp
pdb|2CL6|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With S-Caged Gtp
pdb|2CL7|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp
pdb|2CLC|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp (2)
pdb|2EVW|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With R-Caged Gtp
pdb|2CE2|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp
Length = 166
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 82/150 (54%), Gaps = 3/150 (2%)
Query: 5 KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 64
K++L ++ ++ F D + TI ++ QV+ E T DI DTAGQE Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 65 XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 123
+ I + SFE ++ ++++R + + ++ M LV NK DL R V++ + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDL-AARTVESRQAQDL 133
Query: 124 AQENGLSFLETSAKSAHNVNELFYEIAKRL 153
A+ G+ ++ETSAK+ V + FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|D Chain D, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|F Chain F, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|H Chain H, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
Length = 192
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 79/167 (47%), Gaps = 17/167 (10%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
GKT L++ F K QF + T+ + + ++ ++ +WDTAGQE Y L P+
Sbjct: 17 ACGKTCLLIVFSKDQFPEVYVPTVFENYVADI-EVDGKQVELALWDTAGQEDYDRLRPLS 75
Query: 62 YRGXXXXXXXYDITSMDSFER-AKKWVQELQRQGNPNLIMFLVANKVDLE---------- 110
Y + I S DS E +KW E+ + PN+ + LV NK DL
Sbjct: 76 YPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRNDEHTRRELA 134
Query: 111 --EKRKVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYEIAKRLA 154
++ VK EEG A G ++E SAK+ V E+F E+A R A
Sbjct: 135 KMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-EMATRAA 180
>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 81/148 (54%), Gaps = 3/148 (2%)
Query: 5 KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 64
K++L ++ ++ F D + TI ++ QV+ E T DI DTAGQE Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 65 XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 123
+ I + SFE ++ ++++R + + ++ M LV NK DL R V++ + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 124 AQENGLSFLETSAKSAHNVNELFYEIAK 151
A+ G+ ++ETSAK+ V + FY + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVR 161
>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|3KKN|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|2LCF|A Chain A, Solution Structure Of Gppnhp-Bound H-Rast35s Mutant
Protein
Length = 172
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 82/150 (54%), Gaps = 3/150 (2%)
Query: 5 KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 64
K++L ++ ++ F D + +I ++ QV+ E T DI DTAGQE Y ++ Y R
Sbjct: 22 KSALTIQLIQNHFVDEYDPSIEDSYRKQVVIDGE-TCLLDILDTAGQEEYSAMRDQYMRT 80
Query: 65 XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 123
+ I + SFE ++ ++++R + + ++ M LV NK DL R V++ + +
Sbjct: 81 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 139
Query: 124 AQENGLSFLETSAKSAHNVNELFYEIAKRL 153
A+ G+ ++ETSAK+ V + FY + + +
Sbjct: 140 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 169
>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|B Chain B, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|C Chain C, Allosteric Modulation Of H-Ras Gtpase
Length = 166
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 82/150 (54%), Gaps = 3/150 (2%)
Query: 5 KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 64
K++L ++ ++ F D + TI ++ QV+ E T DI DTAGQE Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEFDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 65 XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 123
+ I + SFE ++ ++++R + + ++ M LV NK DL R V++ + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 124 AQENGLSFLETSAKSAHNVNELFYEIAKRL 153
A+ G+ ++ETSAK+ V + FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 82/150 (54%), Gaps = 3/150 (2%)
Query: 5 KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 64
K++L ++ ++ F D + TI ++ QV+ E T DI DTAGQE Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 65 XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 123
+ I + SFE ++ ++++R + + ++ M LV N+ DL R V++ + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNRCDL-AARTVESRQAQDL 133
Query: 124 AQENGLSFLETSAKSAHNVNELFYEIAKRL 153
A+ G+ ++ETSAK+ V + FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2CLD|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp (2)
Length = 166
Score = 74.7 bits (182), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 82/150 (54%), Gaps = 3/150 (2%)
Query: 5 KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 64
K++L ++ ++ F D + TI ++ QV+ E T DI DTAGQE Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 65 XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 123
+ I + SFE ++ ++++R + + ++ M LV NK DL R V++ + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDL-AARTVESRQAQDL 133
Query: 124 AQENGLSFLETSAKSAHNVNELFYEIAKRL 153
A+ G+ ++ETSAK+ V + FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex
Length = 201
Score = 74.7 bits (182), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 79/165 (47%), Gaps = 17/165 (10%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
GKT L++ F K QF + T+ + + ++ ++ +WDTAGQE Y L P+
Sbjct: 35 ACGKTCLLIVFSKDQFPEVYVPTVFENYIADI-EVDGKQVELALWDTAGQEDYDRLRPLS 93
Query: 62 YRGXXXXXXXYDITSMDSFER-AKKWVQELQRQGNPNLIMFLVANKVDLEE--------- 111
Y + I S DS E +KW E+ + PN+ + LV NK DL +
Sbjct: 94 YPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFXPNVPIILVGNKKDLRQDEHTRRELA 152
Query: 112 ---KRKVKNEEGELYAQE-NGLSFLETSAKSAHNVNELFYEIAKR 152
+ V++EEG A + +LE SAK+ V E+F E+A R
Sbjct: 153 KMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF-EMATR 196
>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex
pdb|2GCO|B Chain B, Crystal Structure Of The Human Rhoc-gppnhp Complex
pdb|2GCP|A Chain A, Crystal Structure Of The Human Rhoc-Gsp Complex
Length = 201
Score = 74.7 bits (182), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 79/165 (47%), Gaps = 17/165 (10%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
GKT L++ F K QF + T+ + + ++ ++ +WDTAGQE Y L P+
Sbjct: 35 ACGKTCLLIVFSKDQFPEVYVPTVFENYIADI-EVDGKQVELALWDTAGQEDYDRLRPLS 93
Query: 62 YRGXXXXXXXYDITSMDSFER-AKKWVQELQRQGNPNLIMFLVANKVDLEE--------- 111
Y + I S DS E +KW E+ + PN+ + LV NK DL +
Sbjct: 94 YPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRQDEHTRRELA 152
Query: 112 ---KRKVKNEEGELYAQE-NGLSFLETSAKSAHNVNELFYEIAKR 152
+ V++EEG A + +LE SAK+ V E+F E+A R
Sbjct: 153 KMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF-EMATR 196
>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex
With Pde6d
Length = 181
Score = 74.7 bits (182), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 75/148 (50%), Gaps = 2/148 (1%)
Query: 3 TGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYY 62
GK+SL ++FV+GQF D + TI F T+++++N + DTAGQ+ Y Y
Sbjct: 17 VGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYS 75
Query: 63 RGXXXXXXXYDITSMDSFERAKKWVQEL-QRQGNPNLIMFLVANKVDLEEKRKVKNEEGE 121
Y +TS+ SFE K +L G + + LV NK DL +R + EEG+
Sbjct: 76 IDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGK 135
Query: 122 LYAQENGLSFLETSAKSAHNVNELFYEI 149
A+ +FLE+SAK ++F I
Sbjct: 136 ALAESWNAAFLESSAKENQTAVDVFRRI 163
>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|B Chain B, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|C Chain C, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|D Chain D, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
Length = 212
Score = 74.3 bits (181), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 90/188 (47%), Gaps = 17/188 (9%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
GKT +++ + +F T+ F V +++ + +WDTAGQE Y L P+
Sbjct: 19 AVGKTCMLICYTSNKFPTDYIPTVFDNFSANV-AVDGQIVNLGLWDTAGQEDYSRLRPLS 77
Query: 62 YRGXXXXXXXYDITSMDSFERA-KKWVQELQRQGNPNLIMFLVANKVDLEEKRK------ 114
YRG + + S S+E KKW+ EL+R PN+ + LV K+DL + +
Sbjct: 78 YRGADIFVLAFSLISKASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRDDKGYLADHT 136
Query: 115 --VKNEEG-ELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVNPSRQTGMKLHTESH 171
+ + +G EL Q +++E S+K+ NV +F K + + P R+ + ++H
Sbjct: 137 NVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVV--LQPPRRKEVPRRRKNH 194
Query: 172 GGGRRGFC 179
RR C
Sbjct: 195 ---RRSGC 199
>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|B Chain B, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|C Chain C, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
Length = 166
Score = 74.3 bits (181), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 82/150 (54%), Gaps = 3/150 (2%)
Query: 5 KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 64
K++L ++ ++ F D + +I ++ QV+ E T DI DTAGQE Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPSIEDSYRKQVVIDGE-TCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 65 XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 123
+ I + SFE ++ ++++R + + ++ M LV NK DL R V++ + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 124 AQENGLSFLETSAKSAHNVNELFYEIAKRL 153
A+ G+ ++ETSAK+ V + FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form
pdb|1LF5|A Chain A, Crystal Structure Of Rasa59g In The Gdp-Bound Form
pdb|1NVU|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVU|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
Length = 166
Score = 74.3 bits (181), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 81/150 (54%), Gaps = 3/150 (2%)
Query: 5 KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 64
K++L ++ ++ F D + TI ++ QV+ E T DI DT GQE Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTGGQEEYSAMRDQYMRT 74
Query: 65 XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 123
+ I + SFE ++ ++++R + + ++ M LV NK DL R V++ + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 124 AQENGLSFLETSAKSAHNVNELFYEIAKRL 153
A+ G+ ++ETSAK+ V + FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 74.3 bits (181), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 81/150 (54%), Gaps = 3/150 (2%)
Query: 5 KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 64
K++L ++ ++ F D + TI ++ QV+ E T DI DT GQE Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTTGQEEYSAMRDQYMRT 74
Query: 65 XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 123
+ I + SFE ++ ++++R + + ++ M LV NK DL R V++ + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 124 AQENGLSFLETSAKSAHNVNELFYEIAKRL 153
A+ G+ ++ETSAK+ V + FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
pdb|3SEA|B Chain B, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
Length = 167
Score = 74.3 bits (181), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 75/148 (50%), Gaps = 2/148 (1%)
Query: 3 TGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYY 62
GK+SL ++FV+GQF D + TI F T+++++N + DTAGQ+ Y Y
Sbjct: 15 VGKSSLTIQFVEGQFVDSADPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYS 73
Query: 63 RGXXXXXXXYDITSMDSFERAKKWV-QELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGE 121
Y +TS+ SFE K + L G + + LV NK DL +R + EEG+
Sbjct: 74 IDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGK 133
Query: 122 LYAQENGLSFLETSAKSAHNVNELFYEI 149
A+ +FLE+SAK ++F I
Sbjct: 134 ALAESWNAAFLESSAKENQTAVDVFRRI 161
>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp
Length = 166
Score = 73.9 bits (180), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 82/150 (54%), Gaps = 3/150 (2%)
Query: 5 KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 64
K++L ++ ++ F D + TI ++ QV+ E T DI DTAG+E Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGKEEYSAMRDQYMRT 74
Query: 65 XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 123
+ I + SFE ++ ++++R + + ++ M LV NK DL R V++ + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 124 AQENGLSFLETSAKSAHNVNELFYEIAKRL 153
A+ G+ ++ETSAK+ V + FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 73.9 bits (180), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 81/150 (54%), Gaps = 3/150 (2%)
Query: 5 KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 64
K++L ++ ++ F D + TI ++ QV+ E T DI DTAG E Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGHEEYSAMRDQYMRT 74
Query: 65 XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 123
+ I + SFE ++ ++++R + + ++ M LV NK DL R V++ + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 124 AQENGLSFLETSAKSAHNVNELFYEIAKRL 153
A+ G+ ++ETSAK+ V + FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp
Length = 169
Score = 73.9 bits (180), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 75/148 (50%), Gaps = 2/148 (1%)
Query: 3 TGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYY 62
GK+SL ++FV+GQF D + TI F T+++++N + DTAGQ+ Y Y
Sbjct: 12 VGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYS 70
Query: 63 RGXXXXXXXYDITSMDSFERAKKWV-QELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGE 121
Y +TS+ SFE K + L G + + LV NK DL +R + EEG+
Sbjct: 71 IDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGK 130
Query: 122 LYAQENGLSFLETSAKSAHNVNELFYEI 149
A+ +FLE+SAK ++F I
Sbjct: 131 ALAESWNAAFLESSAKENQTAVDVFRRI 158
>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras
Length = 166
Score = 73.9 bits (180), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 82/150 (54%), Gaps = 3/150 (2%)
Query: 5 KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 64
K++L ++ ++ F + + TI ++ QV+ E T DI DTAGQE Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVEKYDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 65 XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 123
+ I + SFE ++ ++++R + + ++ M LV NK DL R V++ + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 124 AQENGLSFLETSAKSAHNVNELFYEIAKRL 153
A+ G+ ++ETSAK+ V + FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp
pdb|1XTR|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With
Gppnhp
pdb|1XTS|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gtp
Length = 177
Score = 73.9 bits (180), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 75/148 (50%), Gaps = 2/148 (1%)
Query: 3 TGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYY 62
GK+SL ++FV+GQF D + TI F T+++++N + DTAGQ+ Y Y
Sbjct: 17 VGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYS 75
Query: 63 RGXXXXXXXYDITSMDSFERAKKWV-QELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGE 121
Y +TS+ SFE K + L G + + LV NK DL +R + EEG+
Sbjct: 76 IDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGK 135
Query: 122 LYAQENGLSFLETSAKSAHNVNELFYEI 149
A+ +FLE+SAK ++F I
Sbjct: 136 ALAESWNAAFLESSAKENQTAVDVFRRI 163
>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp
pdb|3KKQ|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gdp
Length = 183
Score = 73.6 bits (179), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 79/149 (53%), Gaps = 3/149 (2%)
Query: 5 KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 64
K++L ++F + F D + TI ++ N+ I D+ DTAGQE + ++ Y R
Sbjct: 31 KSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAI-LDVLDTAGQEEFSAMREQYMRT 89
Query: 65 XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 123
Y +T SFE ++ Q + R + + M LVANKVDL RKV ++G+
Sbjct: 90 GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEM 149
Query: 124 AQENGLSFLETSAKSAH-NVNELFYEIAK 151
A + + ++ETSAK NV++ F+++ +
Sbjct: 150 ATKYNIPYIETSAKDPPLNVDKTFHDLVR 178
>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras,
In The Gdp- Bound State
Length = 181
Score = 73.2 bits (178), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 78/148 (52%), Gaps = 2/148 (1%)
Query: 5 KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 64
K++L ++F++ F + TI ++ T++ S++ + + DI DTAGQE + ++ Y R
Sbjct: 22 KSALTIQFIQSYFVSDYDPTIEDSY-TKICSVDGIPARLDILDTAGQEEFGAMREQYMRA 80
Query: 65 XXXXXXXYDITSMDSF-ERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELY 123
+ I SF E K + Q L+ + + + LV NK DLE +R+V E +
Sbjct: 81 GHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAF 140
Query: 124 AQENGLSFLETSAKSAHNVNELFYEIAK 151
+ +++ E SAK NV+E F ++ +
Sbjct: 141 GASHHVAYFEASAKLRLNVDEAFEQLVR 168
>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp
(State 1)
Length = 171
Score = 73.2 bits (178), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 81/150 (54%), Gaps = 3/150 (2%)
Query: 5 KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 64
K++L ++ ++ F D + TI ++ QV+ E T DI DTAG E Y ++ Y R
Sbjct: 21 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGLEEYSAMRDQYMRT 79
Query: 65 XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 123
+ I + SFE ++ ++++R + + ++ M LV NK DL R V++ + +
Sbjct: 80 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 138
Query: 124 AQENGLSFLETSAKSAHNVNELFYEIAKRL 153
A+ G+ ++ETSAK+ V + FY + + +
Sbjct: 139 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 168
>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp
Length = 166
Score = 73.2 bits (178), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 81/150 (54%), Gaps = 3/150 (2%)
Query: 5 KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 64
K++L ++ ++ F D + TI ++ QV+ E T DI DTAG E Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGVEEYSAMRDQYMRT 74
Query: 65 XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 123
+ I + SFE ++ ++++R + + ++ M LV NK DL R V++ + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 124 AQENGLSFLETSAKSAHNVNELFYEIAKRL 153
A+ G+ ++ETSAK+ V + FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form
Length = 166
Score = 72.8 bits (177), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 81/150 (54%), Gaps = 3/150 (2%)
Query: 5 KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 64
K++L ++ ++ F D + TI ++ QV+ E T DI DTAG E Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGGEEYSAMRDQYMRT 74
Query: 65 XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 123
+ I + SFE ++ ++++R + + ++ M LV NK DL R V++ + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 124 AQENGLSFLETSAKSAHNVNELFYEIAKRL 153
A+ G+ ++ETSAK+ V + FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a
Mutant
Length = 166
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 81/150 (54%), Gaps = 3/150 (2%)
Query: 5 KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 64
K++L ++ ++ F D + TI ++ QV+ E T DI DTA QE Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAAQEEYSAMRDQYMRT 74
Query: 65 XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 123
+ I + SFE ++ ++++R + + ++ M LV NK DL R V++ + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXDL-AARTVESRQAQDL 133
Query: 124 AQENGLSFLETSAKSAHNVNELFYEIAKRL 153
A+ G+ ++ETSAK+ V + FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant
Length = 167
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 81/150 (54%), Gaps = 3/150 (2%)
Query: 5 KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 64
K++L ++ ++ F D + TI ++ QV+ E T DI DTA QE Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAAQEEYSAMRDQYMRT 74
Query: 65 XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 123
+ I + SFE ++ ++++R + + ++ M LV NK DL R V++ + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXDL-AARTVESRQAQDL 133
Query: 124 AQENGLSFLETSAKSAHNVNELFYEIAKRL 153
A+ G+ ++ETSAK+ V + FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
pdb|2RGD|A Chain A, Crystal Structure Of H-Rasq61l-Gppnhp
pdb|3OIU|A Chain A, H-Rasq61l With Allosteric Switch In The "on" State
Length = 166
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 81/150 (54%), Gaps = 3/150 (2%)
Query: 5 KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 64
K++L ++ ++ F D + TI ++ QV+ E T DI DTAG E Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGLEEYSAMRDQYMRT 74
Query: 65 XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 123
+ I + SFE ++ ++++R + + ++ M LV NK DL R V++ + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 124 AQENGLSFLETSAKSAHNVNELFYEIAKRL 153
A+ G+ ++ETSAK+ V + FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State
Length = 207
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 76/167 (45%), Gaps = 17/167 (10%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
GKT L++ F K +F + T+ + + ++ ++ +WDTAGQE Y L P+
Sbjct: 35 ACGKTCLLIVFSKDEFPEVYVPTVFENYVADI-EVDGKQVELALWDTAGQEDYDRLRPLS 93
Query: 62 YRGXXXXXXXYDITSMDSFER-AKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEG 120
Y + + S DS E +KWV E+ + PN+ + LVANK DL V+ E
Sbjct: 94 YPDTDVILMCFSVDSPDSLENIPEKWVPEV-KHFCPNVPIILVANKKDLRSDEHVRTELA 152
Query: 121 ELYAQE-------------NGLSFLETSAKSAHNVNELFYEIAKRLA 154
+ + +LE SAK+ V E+F E A R A
Sbjct: 153 RMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVF-ETATRAA 198
>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp
pdb|2RGG|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp, Trigonal Crystal
Form
Length = 166
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 81/150 (54%), Gaps = 3/150 (2%)
Query: 5 KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 64
K++L ++ ++ F D + TI ++ QV+ E T DI DTAG E Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGIEEYSAMRDQYMRT 74
Query: 65 XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 123
+ I + SFE ++ ++++R + + ++ M LV NK DL R V++ + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 124 AQENGLSFLETSAKSAHNVNELFYEIAKRL 153
A+ G+ ++ETSAK+ V + FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1XD2|A Chain A, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
Length = 166
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 81/150 (54%), Gaps = 3/150 (2%)
Query: 5 KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 64
K++L ++ ++ F D + TI ++ QV+ E T DI DTAGQE ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEEASAMRDQYMRT 74
Query: 65 XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 123
+ I + SFE ++ ++++R + + ++ M LV NK DL R V++ + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 124 AQENGLSFLETSAKSAHNVNELFYEIAKRL 153
A+ G+ ++ETSAK+ V + FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g
Length = 166
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 81/150 (54%), Gaps = 3/150 (2%)
Query: 5 KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 64
K++L ++ ++ F D + TI ++ QV+ E + DI DTAG E Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETXL-LDILDTAGGEEYSAMRDQYMRT 74
Query: 65 XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 123
+ I + SFE ++ ++++R + + ++ M LV NK DL R V++ + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 124 AQENGLSFLETSAKSAHNVNELFYEIAKRL 153
A+ G+ ++ETSAK+ V + FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp
Length = 190
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 78/150 (52%), Gaps = 3/150 (2%)
Query: 5 KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 64
K++L ++ ++ F D + TI ++ QV+ E T DI DTAGQE Y ++ Y R
Sbjct: 34 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEEYSAMRDQYMRT 92
Query: 65 XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 123
+ I + SF + ++++R + + ++ M LV NK DL R V ++
Sbjct: 93 GEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLP-TRTVDTKQAHEL 151
Query: 124 AQENGLSFLETSAKSAHNVNELFYEIAKRL 153
A+ G+ F+ETSAK+ V + FY + + +
Sbjct: 152 AKSYGIPFIETSAKTRQGVEDAFYTLVREI 181
>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex
pdb|2WBL|D Chain D, Three-Dimensional Structure Of A Binary Rop-Prone Complex
Length = 180
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 82/165 (49%), Gaps = 15/165 (9%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
GKT +++ + F T+ F V+ ++ T+ +WDTAGQE Y+ L P+
Sbjct: 16 AVGKTCMLISYTGNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQEDYNRLRPLS 74
Query: 62 YRGXXXXXXXYDITSMDSFERA-KKWVQELQRQGNPNLIMFLVANKVDL-EEKRKVKNEE 119
YRG + + S S+E KKW+ EL+ P + + LV K+DL ++K+ +K+
Sbjct: 75 YRGADVFLLAFSLISKASYENIHKKWLPELKHYA-PGIPIVLVGTKLDLRDDKQFLKDHP 133
Query: 120 G----------ELYAQENGLSFLETSAKSAHNVNELFYEIAKRLA 154
G EL + +LE S+K+ NV +F + A R+A
Sbjct: 134 GAASITTAQGEELRKMIGAVRYLECSSKTQQNVKAVF-DTAIRVA 177
>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap
pdb|1FTN|A Chain A, Crystal Structure Of The Human RhoaGDP COMPLEX
Length = 193
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 78/167 (46%), Gaps = 17/167 (10%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
GKT L++ K QF + T+ + + ++ ++ +WDTAGQE Y L P+
Sbjct: 15 ACGKTCLLIVNSKDQFPEVYVPTVFENYVADI-EVDGKQVELALWDTAGQEDYDRLRPLS 73
Query: 62 YRGXXXXXXXYDITSMDSFER-AKKWVQELQRQGNPNLIMFLVANKVDLE---------- 110
Y + I S DS E +KW E+ + PN+ + LV NK DL
Sbjct: 74 YPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRNDEHTRRELA 132
Query: 111 --EKRKVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYEIAKRLA 154
++ VK EEG A G ++E SAK+ V E+F E+A R A
Sbjct: 133 KMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-EMATRAA 178
>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
pdb|1CC0|C Chain C, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
Length = 190
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 78/167 (46%), Gaps = 17/167 (10%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
GKT L++ K QF + T+ + + ++ ++ +WDTAGQE Y L P+
Sbjct: 15 ACGKTCLLIVNSKDQFPEVYVPTVFENYVADI-EVDGKQVELALWDTAGQEDYDRLRPLS 73
Query: 62 YRGXXXXXXXYDITSMDSFER-AKKWVQELQRQGNPNLIMFLVANKVDLE---------- 110
Y + I S DS E +KW E+ + PN+ + LV NK DL
Sbjct: 74 YPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRNDEHTRRELA 132
Query: 111 --EKRKVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYEIAKRLA 154
++ VK EEG A G ++E SAK+ V E+F E+A R A
Sbjct: 133 KMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-EMATRAA 178
>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5
Length = 182
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 77/157 (49%), Gaps = 14/157 (8%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
GKT L++ + F T+ F V+ +N T+ +WDTAGQE Y+ L P+
Sbjct: 18 AVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGATVNLGLWDTAGQEDYNRLRPLS 76
Query: 62 YRGXXXXXXXYDITSMDSFER-AKKWVQELQRQGNPNLIMFLVANKVDLEEKRK------ 114
YRG + + S S+E +KKW+ EL+ P + + LV K+DL + ++
Sbjct: 77 YRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIVLVGTKLDLRDDKQFFIDHP 135
Query: 115 ----VKNEEGELYAQENGL-SFLETSAKSAHNVNELF 146
+ +GE + G +++E S+KS NV +F
Sbjct: 136 GAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVF 172
>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|B Chain B, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|P Chain P, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
Length = 183
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 79/149 (53%), Gaps = 3/149 (2%)
Query: 5 KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 64
K++L ++F + F D + TI ++ N+ I D+ DTAGQE + ++ Y R
Sbjct: 31 KSALTIQFFQKIFVDEYDPTIEDSYRKHTEIDNQWAI-LDVLDTAGQEEFSAMREQYMRT 89
Query: 65 XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 123
Y +T SFE ++ Q + R + + M LVANKVDL RKV ++G+
Sbjct: 90 GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEM 149
Query: 124 AQENGLSFLETSAKSAH-NVNELFYEIAK 151
A + + ++ETSAK NV++ F+++ +
Sbjct: 150 ATKYNIPYIETSAKDPPLNVDKTFHDLVR 178
>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX
Length = 177
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 78/167 (46%), Gaps = 17/167 (10%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
GKT L++ K QF + T+ + + ++ ++ +WDTAGQE Y L P+
Sbjct: 13 ACGKTCLLIVNSKDQFPEVYVPTVFENYVADI-EVDGKQVELALWDTAGQEDYDRLRPLS 71
Query: 62 YRGXXXXXXXYDITSMDSFER-AKKWVQELQRQGNPNLIMFLVANKVDLE---------- 110
Y + I S DS E +KW E+ + PN+ + LV NK DL
Sbjct: 72 YPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRNDEHTRRELA 130
Query: 111 --EKRKVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYEIAKRLA 154
++ VK EEG A G ++E SAK+ V E+F E+A R A
Sbjct: 131 KMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-EMATRAA 176
>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap
Domain Of Arhgap20
Length = 180
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 78/167 (46%), Gaps = 17/167 (10%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
GKT L++ K QF + T+ + + ++ ++ +WDTAGQE Y L P+
Sbjct: 15 ACGKTCLLIVNSKDQFPEVYVPTVFENYVADI-EVDGKQVELALWDTAGQEDYDRLRPLS 73
Query: 62 YRGXXXXXXXYDITSMDSFER-AKKWVQELQRQGNPNLIMFLVANKVDLE---------- 110
Y + I S DS E +KW E+ + PN+ + LV NK DL
Sbjct: 74 YPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRNDEHTRRELA 132
Query: 111 --EKRKVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYEIAKRLA 154
++ VK EEG A G ++E SAK+ V E+F E+A R A
Sbjct: 133 KMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-EMATRAA 178
>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|B Chain B, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|C Chain C, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|D Chain D, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
Length = 199
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 77/147 (52%), Gaps = 4/147 (2%)
Query: 5 KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 64
K+SLVLRFVKG F D TI + QV+S ++ I DT G ++ ++ +
Sbjct: 21 KSSLVLRFVKGTFRDTYIPTIEDTY-RQVISCDKSVCTLQITDTTGSHQFPAMQRLSISK 79
Query: 65 XXXXXXXYDITSMDSFERAKKWVQEL-QRQGN-PNLIMFLVANKVDLEEKRKVKNEEGEL 122
+ +TS S E + + Q +G+ ++ + LV NK D E +R+V E +
Sbjct: 80 GHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCD-ETQREVDTREAQA 138
Query: 123 YAQENGLSFLETSAKSAHNVNELFYEI 149
AQE +F+ETSAK +NV ELF E+
Sbjct: 139 VAQEWKCAFMETSAKMNYNVKELFQEL 165
>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|1XCG|F Chain F, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|3T06|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
pdb|3T06|F Chain F, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
Length = 178
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 78/167 (46%), Gaps = 17/167 (10%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
GKT L++ K QF + T+ + + ++ ++ +WDTAGQE Y L P+
Sbjct: 13 ACGKTCLLIVNSKDQFPEVYVPTVFENYVADI-EVDGKQVELALWDTAGQEDYDRLRPLS 71
Query: 62 YRGXXXXXXXYDITSMDSFER-AKKWVQELQRQGNPNLIMFLVANKVDLE---------- 110
Y + I S DS E +KW E+ + PN+ + LV NK DL
Sbjct: 72 YPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRNDEHTRRELA 130
Query: 111 --EKRKVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYEIAKRLA 154
++ VK EEG A G ++E SAK+ V E+F E+A R A
Sbjct: 131 KMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-EMATRAA 176
>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|3RAP|S Chain S, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|1KAO|A Chain A, Crystal Structure Of The Small G Protein Rap2a With Gdp
pdb|2RAP|A Chain A, The Small G Protein Rap2a In Complex With Gtp
Length = 167
Score = 70.9 bits (172), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 84/150 (56%), Gaps = 2/150 (1%)
Query: 5 KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 64
K++L ++FV G F + + TI F+ + + ++ +I DTAG E++ S+ +Y +
Sbjct: 16 KSALTVQFVTGTFIEKYDPTI-EDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKN 74
Query: 65 XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 123
Y + + SF+ K ++ R + + + LV NKVDLE +R+V + EG
Sbjct: 75 GQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRAL 134
Query: 124 AQENGLSFLETSAKSAHNVNELFYEIAKRL 153
A+E G F+ETSAKS V+ELF EI +++
Sbjct: 135 AEEWGCPFMETSAKSKTMVDELFAEIVRQM 164
>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
pdb|1Z2C|C Chain C, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
Length = 193
Score = 70.9 bits (172), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 78/165 (47%), Gaps = 17/165 (10%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
GKT L++ K QF + T+ + + ++ ++ +WDTAGQE Y L P+
Sbjct: 15 ACGKTCLLIVNSKDQFPEVYVPTVFENYIADI-EVDGKQVELALWDTAGQEDYDRLRPLS 73
Query: 62 YRGXXXXXXXYDITSMDSFER-AKKWVQELQRQGNPNLIMFLVANKVDLEE--------- 111
Y + I S DS E +KW E+ + PN+ + LV NK DL +
Sbjct: 74 YPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRQDEHTRRELA 132
Query: 112 ---KRKVKNEEGELYAQE-NGLSFLETSAKSAHNVNELFYEIAKR 152
+ V++EEG A + +LE SAK+ V E+F E+A R
Sbjct: 133 KMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF-EMATR 176
>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 1)
pdb|3PIT|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 2)
Length = 183
Score = 70.5 bits (171), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 78/149 (52%), Gaps = 3/149 (2%)
Query: 5 KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 64
K++L ++F + F + TI ++ N+ I D+ DTAGQE + ++ Y R
Sbjct: 31 KSALTIQFFQKIFVPEYDPTIEDSYLKHTEIDNQWAI-LDVLDTAGQEEFSAMREQYMRT 89
Query: 65 XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 123
Y +T SFE ++ Q + R + + M LVANKVDL RKV ++G+
Sbjct: 90 GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEM 149
Query: 124 AQENGLSFLETSAKSAH-NVNELFYEIAK 151
A + + ++ETSAK NV++ F+++ +
Sbjct: 150 ATKYNIPYIETSAKDPPLNVDKTFHDLVR 178
>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp
pdb|1X1S|A Chain A, Crystal Structure Of M-ras In Complex With Gppnhp
Length = 178
Score = 70.1 bits (170), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 78/149 (52%), Gaps = 3/149 (2%)
Query: 5 KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 64
K++L ++F + F + TI ++ N+ I D+ DTAGQE + ++ Y R
Sbjct: 26 KSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAI-LDVLDTAGQEEFSAMREQYMRT 84
Query: 65 XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 123
Y +T SFE ++ Q + R + + M LVANKVDL RKV ++G+
Sbjct: 85 GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEM 144
Query: 124 AQENGLSFLETSAKSAH-NVNELFYEIAK 151
A + + ++ETSAK NV++ F+++ +
Sbjct: 145 ATKYNIPYIETSAKDPPLNVDKTFHDLVR 173
>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8
pdb|2NTY|D Chain D, Rop4-Gdp-Prone8
Length = 180
Score = 70.1 bits (170), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 74/157 (47%), Gaps = 14/157 (8%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
GKT +++ + F T+ F V+ ++ T+ +WDTAGQE Y+ L P+
Sbjct: 16 AVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGNTVNLGLWDTAGQEDYNRLRPLS 74
Query: 62 YRGXXXXXXXYDITSMDSFER-AKKWVQELQRQGNPNLIMFLVANKVDLEEKRK------ 114
YRG + + S S+E AKKW+ EL R P + + LV K+DL + ++
Sbjct: 75 YRGADVFILAFSLISKASYENVAKKWIPEL-RHYAPGVPIILVGTKLDLRDDKQFFIDHP 133
Query: 115 -----VKNEEGELYAQENGLSFLETSAKSAHNVNELF 146
N+ EL ++E S+K+ NV +F
Sbjct: 134 GAVPITTNQGEELKKLIGSPIYIECSSKTQQNVKAVF 170
>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With
Gdp
Length = 180
Score = 69.7 bits (169), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 77/168 (45%), Gaps = 17/168 (10%)
Query: 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPM 60
+ GKT L++ F K QF T+ + + ++ ++ +WDTAGQE Y P+
Sbjct: 14 VACGKTCLLIVFSKDQFPAVYVPTVFENYVADI-EVDGKQVELALWDTAGQEDYDRARPL 72
Query: 61 YYRGXXXXXXXYDITSMDSFER-AKKWVQELQRQGNPNLIMFLVANKVDLE--------- 110
Y + I S DS E +KW E+ + PN+ + LV NK DL
Sbjct: 73 SYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRNDEHTAREL 131
Query: 111 ---EKRKVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYEIAKRLA 154
++ VK EG A G ++E SAK+ V E+F E+A R A
Sbjct: 132 AKMKQEPVKPAEGRDMANRIGAFGYMECSAKTKDGVREVF-EMATRAA 178
>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa
Mutant (Q63l)
Length = 184
Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 77/167 (46%), Gaps = 17/167 (10%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
GKT L++ K QF + T+ + + ++ ++ +WDTAG E Y L P+
Sbjct: 18 ACGKTCLLIVNSKDQFPEVYVPTVFENYVADI-EVDGKQVELALWDTAGLEDYDRLRPLS 76
Query: 62 YRGXXXXXXXYDITSMDSFER-AKKWVQELQRQGNPNLIMFLVANKVDLE---------- 110
Y + I S DS E +KW E+ + PN+ + LV NK DL
Sbjct: 77 YPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRNDEHTRRELA 135
Query: 111 --EKRKVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYEIAKRLA 154
++ VK EEG A G ++E SAK+ V E+F E+A R A
Sbjct: 136 KMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-EMATRAA 181
>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|D Chain D, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|F Chain F, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
Length = 188
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 80/167 (47%), Gaps = 21/167 (12%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
GKT L++ KGQF + T+ + V ++ ++ +WDTAGQE Y L P+
Sbjct: 20 ACGKTCLLIVNSKGQFPEVYVPTVFENYVADV-EVDGRRVELALWDTAGQEDYDRLRPLS 78
Query: 62 YRGXXXXXXXYDITSMDSFERAK-KWVQELQR--QGNPNLIMFLVANKVDL--------- 109
Y + I DS E + KW+ E+ QG P + LV KVDL
Sbjct: 79 YPDSNVVLICFSIDLPDSLENVQEKWIAEVLHFCQGVP---IILVGCKVDLRNDPQTIEQ 135
Query: 110 ---EEKRKVKNEEGELYAQENGLS-FLETSAKSAHNVNELFYEIAKR 152
E ++ V ++EG+ A + G + + E SAK+ + V E+F E A R
Sbjct: 136 LRQEGQQPVTSQEGQSVADQIGATGYYECSAKTGYGVREVF-EAATR 181
>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein
Rhod
Length = 214
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 78/164 (47%), Gaps = 16/164 (9%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
G GKTSL++ F G F + T+ + L + + IWDTAGQ+ Y L P++
Sbjct: 44 GCGKTSLLMVFADGAFPESYTPTVFERYMVN-LQVKGKPVHLHIWDTAGQDDYDRLRPLF 102
Query: 62 YRGXXXXXXXYDITSMDSFERA-KKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNE-- 118
Y +D+TS +SF+ +W E+ + + +V K DL + + + N+
Sbjct: 103 YPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCK-KVPIIVVGCKTDLRKDKSLVNKLR 161
Query: 119 ----------EGELYAQENG-LSFLETSAKSAHNVNELFYEIAK 151
G+ A+ G +++LE SA+ NV+ +F E A+
Sbjct: 162 RNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAE 205
>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State
Length = 201
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 76/161 (47%), Gaps = 20/161 (12%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAF--FTQVLSLNEVTIKFDIWDTAGQERYHSLAP 59
GKTSLV+ + + I AF F+ V+S++ ++ + DTAGQ+ + L P
Sbjct: 30 AVGKTSLVVSYTTN---GYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRP 86
Query: 60 MYYRGXXXXXXXYDITSMDSFER-AKKWVQELQRQGNPNLIMFLVANKVDLEE------- 111
+ Y + + S SF+ ++KWV E+ R P + LV + DL E
Sbjct: 87 LCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEI-RCHCPKAPIILVGTQSDLREDVKVLIE 145
Query: 112 -----KRKVKNEEGELYAQE-NGLSFLETSAKSAHNVNELF 146
++ V E +L A+E S++E SA + N+ E+F
Sbjct: 146 LDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVF 186
>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC2|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
Length = 208
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 76/157 (48%), Gaps = 11/157 (7%)
Query: 4 GKTSLVLRFV-KG-QFFDFQESTIGAAFFTQVLSLNEVTIKFDIW--DTAGQERYHSLAP 59
GK++L+ F KG +F T G +++ + T+ +++ DTAG + Y
Sbjct: 32 GKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQIS 91
Query: 60 MYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPN----LIMFLVANKVDLEEKR-K 114
Y+ G +D++SM+SFE K W EL + P+ L LVANK DL +R +
Sbjct: 92 QYWNGVYYAILVFDVSSMESFESCKAWF-ELLKSARPDRERPLRAVLVANKTDLPPQRHQ 150
Query: 115 VKNEEGELYAQENGLSFLETSAKSA-HNVNELFYEIA 150
V+ + + +A N L F + SA + + F IA
Sbjct: 151 VRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIA 187
>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex
Length = 192
Score = 60.1 bits (144), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 76/174 (43%), Gaps = 16/174 (9%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
GKT L++ + F T+ + V+ ++ + +WDTAGQE Y L P+
Sbjct: 13 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDSKPVNLGLWDTAGQEDYDRLRPLS 71
Query: 62 YRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEEKR------- 113
Y + + S S+E + KW E+ R P+ + LV K+DL + +
Sbjct: 72 YPQTDVFLICFSLVSPASYENVRAKWFPEV-RHHCPSTPIILVGTKLDLRDDKDTIEKLK 130
Query: 114 -----KVKNEEGELYAQE-NGLSFLETSAKSAHNVNELFYEIAKRLAEVNPSRQ 161
+ +G A+E + + +LE SA + + +F E + + P+RQ
Sbjct: 131 EKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVLCPQPTRQ 184
>pdb|1MH1|A Chain A, Small G-Protein
Length = 186
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 75/174 (43%), Gaps = 16/174 (9%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
GKT L++ + F T+ + V+ ++ + +WDTAGQE Y L P+
Sbjct: 15 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQEDYDRLRPLS 73
Query: 62 YRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEEKR------- 113
Y + + S SFE + KW E+ R PN + LV K+DL + +
Sbjct: 74 YPQTDVSLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRDDKDTIEKLK 132
Query: 114 -----KVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYEIAKRLAEVNPSRQ 161
+ +G A+E G + +LE SA + + +F E + + P ++
Sbjct: 133 EKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPPVKK 186
>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase
And Gtpase Activating Protein Sptp Bound To Rac1
Length = 184
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 75/174 (43%), Gaps = 16/174 (9%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
GKT L++ + F T+ + V+ ++ + +WDTAGQE Y L P+
Sbjct: 13 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQEDYDRLRPLS 71
Query: 62 YRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEEKR------- 113
Y + + S SFE + KW E+ R PN + LV K+DL + +
Sbjct: 72 YPQTDVSLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRDDKDTIEKLK 130
Query: 114 -----KVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYEIAKRLAEVNPSRQ 161
+ +G A+E G + +LE SA + + +F E + + P ++
Sbjct: 131 EKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPPVKK 184
>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1
pdb|2H7V|B Chain B, Co-crystal Structure Of Ypka-rac1
pdb|2P2L|A Chain A, Rac1-gdp-zinc Complex
pdb|2P2L|B Chain B, Rac1-gdp-zinc Complex
pdb|2P2L|C Chain C, Rac1-gdp-zinc Complex
Length = 188
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 75/174 (43%), Gaps = 16/174 (9%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
GKT L++ + F T+ + V+ ++ + +WDTAGQE Y L P+
Sbjct: 17 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQEDYDRLRPLS 75
Query: 62 YRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEEKR------- 113
Y + + S SFE + KW E+ R PN + LV K+DL + +
Sbjct: 76 YPQTDVSLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRDDKDTIEKLK 134
Query: 114 -----KVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYEIAKRLAEVNPSRQ 161
+ +G A+E G + +LE SA + + +F E + + P ++
Sbjct: 135 EKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPPVKK 188
>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
pdb|1HH4|B Chain B, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
Length = 192
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 75/174 (43%), Gaps = 16/174 (9%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
GKT L++ + F T+ + V+ ++ + +WDTAGQE Y L P+
Sbjct: 13 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQEDYDRLRPLS 71
Query: 62 YRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEEKR------- 113
Y + + S SFE + KW E+ R PN + LV K+DL + +
Sbjct: 72 YPQTDVSLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRDDKDTIEKLK 130
Query: 114 -----KVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYEIAKRLAEVNPSRQ 161
+ +G A+E G + +LE SA + + +F E + + P ++
Sbjct: 131 EKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPPVKK 184
>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With
Arfaptin (P21)
pdb|1I4L|D Chain D, Crystal Structure Analysis Of Rac1-Gdp In Complex With
Arfaptin (P41)
Length = 192
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 75/174 (43%), Gaps = 16/174 (9%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
GKT L++ + F T+ + V+ ++ + +WDTAGQE Y L P+
Sbjct: 13 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQEDYDRLRPLS 71
Query: 62 YRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEEKR------- 113
Y + + S SFE + KW E+ R PN + LV K+DL + +
Sbjct: 72 YPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRDDKDTIEKLK 130
Query: 114 -----KVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYEIAKRLAEVNPSRQ 161
+ +G A+E G + +LE SA + + +F E + + P ++
Sbjct: 131 EKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPPVKK 184
>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The
Vav1 Exchange Factor
Length = 184
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 75/174 (43%), Gaps = 16/174 (9%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
GKT L++ + F T+ + V+ ++ + +WDTAGQE Y L P+
Sbjct: 13 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQEDYDRLRPLS 71
Query: 62 YRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEEKR------- 113
Y + + S SFE + KW E+ R PN + LV K+DL + +
Sbjct: 72 YPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRDDKDTIEKLK 130
Query: 114 -----KVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYEIAKRLAEVNPSRQ 161
+ +G A+E G + +LE SA + + +F E + + P ++
Sbjct: 131 EKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPPVKK 184
>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|B Chain B, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|C Chain C, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|D Chain D, The Crystal Structure Of Rem1 In Complex With Gdp
Length = 175
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 66/149 (44%), Gaps = 6/149 (4%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLN---EVTIKFDIWDTAGQERYHSLA 58
G GKTSL F Q D E +G + + L+++ + D W+ ++ S
Sbjct: 14 GVGKTSLASLFAGKQERDLHEQ-LGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQE 72
Query: 59 PMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLI-MFLVANKVDLEEKRKVKN 117
+G Y I SFE A + +L+R + + + LV NK DL R+V
Sbjct: 73 SCL-QGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSV 131
Query: 118 EEGELYAQENGLSFLETSAKSAHNVNELF 146
EEG A F+ETSA HNV ELF
Sbjct: 132 EEGRACAVVFDCKFIETSATLQHNVAELF 160
>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
pdb|1HE1|D Chain D, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
Length = 176
Score = 57.4 bits (137), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 70/161 (43%), Gaps = 16/161 (9%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
GKT L++ + F T+ + V+ ++ + +WDTAGQE Y L P+
Sbjct: 13 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQEDYDRLRPLS 71
Query: 62 YRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEEKR------- 113
Y + + S SFE + KW E+ R PN + LV K+DL + +
Sbjct: 72 YPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRDDKDTIEKLK 130
Query: 114 -----KVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYE 148
+ +G A+E G + +LE SA + + +F E
Sbjct: 131 EKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 171
>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1
pdb|3TH5|B Chain B, Crystal Structure Of Wild-Type Rac1
Length = 204
Score = 57.4 bits (137), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 70/161 (43%), Gaps = 16/161 (9%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
GKT L++ + F T+ + V+ ++ + +WDTAGQE Y L P+
Sbjct: 40 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQEDYDRLRPLS 98
Query: 62 YRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEEKR------- 113
Y + + S SFE + KW E+ R PN + LV K+DL + +
Sbjct: 99 YPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRDDKDTIEKLK 157
Query: 114 -----KVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYE 148
+ +G A+E G + +LE SA + + +F E
Sbjct: 158 EKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 198
>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta
2
Length = 178
Score = 57.4 bits (137), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 70/161 (43%), Gaps = 16/161 (9%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
GKT L++ + F T+ + V+ ++ + +WDTAGQE Y L P+
Sbjct: 13 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQEDYDRLRPLS 71
Query: 62 YRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEEKR------- 113
Y + + S SFE + KW E+ R PN + LV K+DL + +
Sbjct: 72 YPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRDDKDTIEKLK 130
Query: 114 -----KVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYE 148
+ +G A+E G + +LE SA + + +F E
Sbjct: 131 EKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 171
>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|B Chain B, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|C Chain C, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SU8|A Chain A, Crystal Structure Of A Truncated Intracellular Domain Of
Plexin-B1 In Complex With Rac1
Length = 184
Score = 57.4 bits (137), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 70/161 (43%), Gaps = 16/161 (9%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
GKT L++ + F T+ + V+ ++ + +WDTAGQE Y L P+
Sbjct: 13 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQEDYDRLRPLS 71
Query: 62 YRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEEKR------- 113
Y + + S SFE + KW E+ R PN + LV K+DL + +
Sbjct: 72 YPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRDDKDTIEKLK 130
Query: 114 -----KVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYE 148
+ +G A+E G + +LE SA + + +F E
Sbjct: 131 EKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 171
>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|D Chain D, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|F Chain F, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|H Chain H, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|2NZ8|A Chain A, N-Terminal Dhph Cassette Of Trio In Complex With
Nucleotide- Free Rac1
pdb|3BJI|C Chain C, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
pdb|3BJI|D Chain D, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
Length = 177
Score = 57.0 bits (136), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 70/161 (43%), Gaps = 16/161 (9%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
GKT L++ + F T+ + V+ ++ + +WDTAGQE Y L P+
Sbjct: 13 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQEDYDRLRPLS 71
Query: 62 YRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEEKR------- 113
Y + + S SFE + KW E+ R PN + LV K+DL + +
Sbjct: 72 YPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRDDKDTIEKLK 130
Query: 114 -----KVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYE 148
+ +G A+E G + +LE SA + + +F E
Sbjct: 131 EKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 171
>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBD|B Chain B, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBE|A Chain A, Crystal Structure Of Rac1 P29s Mutant
Length = 187
Score = 57.0 bits (136), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 70/161 (43%), Gaps = 16/161 (9%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
GKT L++ + F T+ + V+ ++ + +WDTAGQE Y L P+
Sbjct: 23 AVGKTCLLISYTTNAFSGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQEDYDRLRPLS 81
Query: 62 YRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEEKR------- 113
Y + + S SFE + KW E+ R PN + LV K+DL + +
Sbjct: 82 YPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRDDKDTIEKLK 140
Query: 114 -----KVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYE 148
+ +G A+E G + +LE SA + + +F E
Sbjct: 141 EKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 181
>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1.
pdb|2YIN|D Chain D, Structure Of The Complex Between Dock2 And Rac1
Length = 196
Score = 57.0 bits (136), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 70/161 (43%), Gaps = 16/161 (9%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
GKT L++ + F T+ + V+ ++ + +WDTAGQE Y L P+
Sbjct: 32 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQEDYDRLRPLS 90
Query: 62 YRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEEKR------- 113
Y + + S SFE + KW E+ R PN + LV K+DL + +
Sbjct: 91 YPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRDDKDTIEKLK 149
Query: 114 -----KVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYE 148
+ +G A+E G + +LE SA + + +F E
Sbjct: 150 EKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 190
>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With
Arfaptin
pdb|2RMK|A Chain A, Rac1PRK1 COMPLEX
Length = 192
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 74/174 (42%), Gaps = 16/174 (9%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
GKT L++ + F T+ + V+ ++ + +WDTAG E Y L P+
Sbjct: 13 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLEDYDRLRPLS 71
Query: 62 YRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEEKR------- 113
Y + + S SFE + KW E+ R PN + LV K+DL + +
Sbjct: 72 YPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRDDKDTIEKLK 130
Query: 114 -----KVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYEIAKRLAEVNPSRQ 161
+ +G A+E G + +LE SA + + +F E + + P ++
Sbjct: 131 EKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPPVKK 184
>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX
Length = 192
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 74/174 (42%), Gaps = 16/174 (9%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
GKT L++ + F T+ + V+ ++ + +WDTAG E Y L P+
Sbjct: 13 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLEDYDRLRPLS 71
Query: 62 YRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEEKR------- 113
Y + + S SFE + KW E+ R PN + LV K+DL + +
Sbjct: 72 YPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRDDKDTIEKLK 130
Query: 114 -----KVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYEIAKRLAEVNPSRQ 161
+ +G A+E G + +LE SA + + +F E + + P ++
Sbjct: 131 EKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPPVKK 184
>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p.
pdb|2IC5|B Chain B, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p
Length = 180
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 70/161 (43%), Gaps = 16/161 (9%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
GKT L++ + F T+ + V+ ++ + +WDTAGQE Y L P+
Sbjct: 14 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQEDYDRLRPLS 72
Query: 62 YRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEEKR------- 113
Y + + S SFE + KW E+ R P+ + LV K+DL + +
Sbjct: 73 YPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPHTPILLVGTKLDLRDDKDTIERLR 131
Query: 114 -----KVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYE 148
+ +G A+E G + +LE SA + + +F E
Sbjct: 132 DKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDE 172
>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REF|A Chain A, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REG|A Chain A, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
pdb|3REG|B Chain B, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
Length = 194
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 72/151 (47%), Gaps = 10/151 (6%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAF--FTQVLSLNEVTIKFDIWDTAGQERYHSLAP 59
GKT L+L F KG+ + + F F+ V+ +WDTAGQE Y L P
Sbjct: 33 AVGKTCLLLAFSKGEI---PTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRP 89
Query: 60 MYYRGXXXXXXXYDITSMDSFER-AKKWVQELQRQGNPNLIMFLVANKVDLEE--KRKVK 116
+ Y + + + SF+ + KW E++ + + LV KVDL + V
Sbjct: 90 LSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTV-LVGLKVDLRKDGSDDVT 148
Query: 117 NEEGELYAQENG-LSFLETSAKSAHNVNELF 146
+EG+ Q+ G ++++E S+ + +NE+F
Sbjct: 149 KQEGDDLCQKLGCVAYIEASSVAKIGLNEVF 179
>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To
Ehrho1-Gtpgammas
Length = 188
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 72/151 (47%), Gaps = 10/151 (6%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAF--FTQVLSLNEVTIKFDIWDTAGQERYHSLAP 59
GKT L+L F KG+ + + F F+ V+ +WDTAGQE Y L P
Sbjct: 32 AVGKTCLLLAFSKGEI---PTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRP 88
Query: 60 MYYRGXXXXXXXYDITSMDSFER-AKKWVQELQRQGNPNLIMFLVANKVDLEE--KRKVK 116
+ Y + + + SF+ + KW E++ + + LV KVDL + V
Sbjct: 89 LSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTV-LVGLKVDLRKDGSDDVT 147
Query: 117 NEEGELYAQENG-LSFLETSAKSAHNVNELF 146
+EG+ Q+ G ++++E S+ + +NE+F
Sbjct: 148 KQEGDDLCQKLGCVAYIEASSVAKIGLNEVF 178
>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp
pdb|2C2H|B Chain B, Crystal Structure Of The Human Rac3 In Complex With Gdp
Length = 192
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 70/161 (43%), Gaps = 16/161 (9%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
GKT L++ + F T+ + V+ ++ + +WDTAGQE Y L P+
Sbjct: 13 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQEDYDRLRPLS 71
Query: 62 YRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEEKR------- 113
Y + + S SFE + KW E+ R P+ + LV K+DL + +
Sbjct: 72 YPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPHTPILLVGTKLDLRDDKDTIERLR 130
Query: 114 -----KVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYE 148
+ +G A+E G + +LE SA + + +F E
Sbjct: 131 DKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDE 171
>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2G0N|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2OV2|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|F Chain F, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|C Chain C, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|G Chain G, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|D Chain D, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|E Chain E, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|H Chain H, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2QME|A Chain A, Crystal Structure Of Human Rac3 In Complex With Crib
Domain Of Human P21-Activated Kinase 1 (Pak1)
Length = 179
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 70/161 (43%), Gaps = 16/161 (9%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
GKT L++ + F T+ + V+ ++ + +WDTAGQE Y L P+
Sbjct: 14 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQEDYDRLRPLS 72
Query: 62 YRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEEKR------- 113
Y + + S SFE + KW E+ R P+ + LV K+DL + +
Sbjct: 73 YPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPHTPILLVGTKLDLRDDKDTIERLR 131
Query: 114 -----KVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYE 148
+ +G A+E G + +LE SA + + +F E
Sbjct: 132 DKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDE 172
>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant
pdb|4GZM|B Chain B, Crystal Structure Of Rac1 F28l Mutant
Length = 204
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 69/161 (42%), Gaps = 16/161 (9%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
GKT L++ + T+ + V+ ++ + +WDTAGQE Y L P+
Sbjct: 40 AVGKTCLLISYTTNALPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQEDYDRLRPLS 98
Query: 62 YRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEEKR------- 113
Y + + S SFE + KW E+ R PN + LV K+DL + +
Sbjct: 99 YPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRDDKDTIEKLK 157
Query: 114 -----KVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYE 148
+ +G A+E G + +LE SA + + +F E
Sbjct: 158 EKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 198
>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
pdb|3B13|D Chain D, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
Length = 184
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 69/161 (42%), Gaps = 16/161 (9%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
GK L++ + F T+ + V+ ++ + +WDTAGQE Y L P+
Sbjct: 20 AVGKNCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQEDYDRLRPLS 78
Query: 62 YRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEEKR------- 113
Y + + S SFE + KW E+ R PN + LV K+DL + +
Sbjct: 79 YPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRDDKDTIEKLK 137
Query: 114 -----KVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYE 148
+ +G A+E G + +LE SA + + +F E
Sbjct: 138 EKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 178
>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp
pdb|2W2X|A Chain A, Complex Of Rac2 And Plcg2 Spph Domain
pdb|2W2X|B Chain B, Complex Of Rac2 And Plcg2 Spph Domain
Length = 185
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 71/162 (43%), Gaps = 16/162 (9%)
Query: 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPM 60
+ GKT L++ + F T+ + V+ ++ + +WDTAGQE Y L P+
Sbjct: 18 VAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDSKPVNLGLWDTAGQEDYDRLRPL 76
Query: 61 YYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEEKR------ 113
Y + + S S+E + KW E+ R P+ + LV K+DL + +
Sbjct: 77 SYPQTDVFLICFSLVSPASYENVRAKWFPEV-RHHCPSTPIILVGTKLDLRDDKDTIEKL 135
Query: 114 ------KVKNEEGELYAQE-NGLSFLETSAKSAHNVNELFYE 148
+ +G A+E + + +LE SA + + +F E
Sbjct: 136 KEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDE 177
>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|B Chain B, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|C Chain C, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|D Chain D, Rac2 (G12v) In Complex With Gtpgs
Length = 184
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 71/162 (43%), Gaps = 16/162 (9%)
Query: 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPM 60
+ GKT L++ + F T+ + V+ ++ + +WDTAGQE Y L P+
Sbjct: 19 VAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDSKPVNLGLWDTAGQEDYDRLRPL 77
Query: 61 YYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEEKR------ 113
Y + + S S+E + KW E+ R P+ + LV K+DL + +
Sbjct: 78 SYPQTDVFLICFSLVSPASYENVRAKWFPEV-RHHCPSTPIILVGTKLDLRDDKDTIEKL 136
Query: 114 ------KVKNEEGELYAQE-NGLSFLETSAKSAHNVNELFYE 148
+ +G A+E + + +LE SA + + +F E
Sbjct: 137 KEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDE 178
>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1
Length = 180
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 69/161 (42%), Gaps = 16/161 (9%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
GKT L++ + F T+ + V+ ++ + +WDTAG E Y L P+
Sbjct: 16 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLEDYDRLRPLS 74
Query: 62 YRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEEKR------- 113
Y + + S SFE + KW E+ R PN + LV K+DL + +
Sbjct: 75 YPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRDDKDTIEKLK 133
Query: 114 -----KVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYE 148
+ +G A+E G + +LE SA + + +F E
Sbjct: 134 EKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 174
>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant
pdb|4GZL|B Chain B, Crystal Structure Of Rac1 Q61l Mutant
Length = 204
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 69/161 (42%), Gaps = 16/161 (9%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
GKT L++ + F T+ + V+ ++ + +WDTAG E Y L P+
Sbjct: 40 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLEDYDRLRPLS 98
Query: 62 YRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEEKR------- 113
Y + + S SFE + KW E+ R PN + LV K+DL + +
Sbjct: 99 YPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRDDKDTIEKLK 157
Query: 114 -----KVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYE 148
+ +G A+E G + +LE SA + + +F E
Sbjct: 158 EKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 198
>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
pdb|1GWN|C Chain C, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
Length = 205
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 81/172 (47%), Gaps = 23/172 (13%)
Query: 3 TGKTSLVLRFVKGQFFDFQESTIGAAF--FTQVLSLNEVTIKFDIWDTAGQERYHSLAPM 60
GKT+L+ F K F E+ + F +T ++ I+ +WDT+G Y ++ P+
Sbjct: 39 CGKTALLHVFAKDCF---PENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPL 95
Query: 61 YYRGXXXXXXXYDITSMDSFERA-KKWVQELQRQGNPNLIMFLVANKVDL---------- 109
Y +DI+ ++ + KKW E+Q + PN M LV K DL
Sbjct: 96 SYPDSDAVLICFDISRPETLDSVLKKWKGEIQ-EFCPNTKMLLVGCKSDLRTDVSTLVEL 154
Query: 110 --EEKRKVKNEEGELYAQENG-LSFLETSA-KSAHNVNELFYEIAKRLAEVN 157
+ V ++G A++ G +++E SA +S ++V ++F+ LA VN
Sbjct: 155 SNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFH--VATLACVN 204
>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS
Length = 184
Score = 53.9 bits (128), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 81/172 (47%), Gaps = 23/172 (13%)
Query: 3 TGKTSLVLRFVKGQFFDFQESTIGAAF--FTQVLSLNEVTIKFDIWDTAGQERYHSLAPM 60
GKT+L+ F K F E+ + F +T ++ I+ +WDT+G Y ++ P+
Sbjct: 18 CGKTALLHVFAKDCF---PENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPL 74
Query: 61 YYRGXXXXXXXYDITSMDSFERA-KKWVQELQRQGNPNLIMFLVANKVDL---------- 109
Y +DI+ ++ + KKW E+Q + PN M LV K DL
Sbjct: 75 SYPDSDAVLICFDISRPETLDSVLKKWKGEIQ-EFCPNTKMLLVGCKSDLRTDVSTLVEL 133
Query: 110 --EEKRKVKNEEGELYAQENG-LSFLETSA-KSAHNVNELFYEIAKRLAEVN 157
+ V ++G A++ G +++E SA +S ++V ++F+ LA VN
Sbjct: 134 SNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFH--VATLACVN 183
>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
pdb|2V55|D Chain D, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
Length = 200
Score = 53.5 bits (127), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 81/172 (47%), Gaps = 23/172 (13%)
Query: 3 TGKTSLVLRFVKGQFFDFQESTIGAAF--FTQVLSLNEVTIKFDIWDTAGQERYHSLAPM 60
GKT+L+ F K F E+ + F +T ++ I+ +WDT+G Y ++ P+
Sbjct: 34 CGKTALLHVFAKDCF---PENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPL 90
Query: 61 YYRGXXXXXXXYDITSMDSFERA-KKWVQELQRQGNPNLIMFLVANKVDL---------- 109
Y +DI+ ++ + KKW E+Q + PN M LV K DL
Sbjct: 91 SYPDSDAVLICFDISRPETLDSVLKKWKGEIQ-EFCPNTKMLLVGCKSDLRTDVSTLVEL 149
Query: 110 --EEKRKVKNEEGELYAQENG-LSFLETSA-KSAHNVNELFYEIAKRLAEVN 157
+ V ++G A++ G +++E SA +S ++V ++F+ LA VN
Sbjct: 150 SNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFH--VATLACVN 199
>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp
pdb|2HT6|B Chain B, Crystal Structure Of Human Gem G-Domain Bound To Gdp
Length = 174
Score = 53.1 bits (126), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 70/157 (44%), Gaps = 7/157 (4%)
Query: 2 GTGKTSLVLRFVK-GQFFDFQESTIGAAFFTQVLSLN---EVTIKFDIWDTAGQERYHSL 57
G GK++L F D +G + + L ++ I D+W+ G+ + L
Sbjct: 16 GVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEW--L 73
Query: 58 APMYYRGXXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVK 116
+ Y IT SFE+A + +L+R + ++ + LV NK DL R+V
Sbjct: 74 HDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVS 133
Query: 117 NEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 153
EG A F+ETSA HNV ELF I +++
Sbjct: 134 VSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQV 170
>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 53.1 bits (126), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 70/157 (44%), Gaps = 7/157 (4%)
Query: 2 GTGKTSLVLRFVK-GQFFDFQESTIGAAFFTQVLSLN---EVTIKFDIWDTAGQERYHSL 57
G GK++L F D +G + + L ++ I D+W+ G+ + L
Sbjct: 16 GVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEW--L 73
Query: 58 APMYYRGXXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVK 116
+ Y IT SFE+A + +L+R + ++ + LV NK DL R+V
Sbjct: 74 HDHXMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVS 133
Query: 117 NEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 153
EG A F+ETSA HNV ELF I +++
Sbjct: 134 VSEGRAXAVVFDCKFIETSAAVQHNVKELFEGIVRQV 170
>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem
Length = 211
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 70/157 (44%), Gaps = 7/157 (4%)
Query: 2 GTGKTSLVLRFVK-GQFFDFQESTIGAAFFTQVLSLN---EVTIKFDIWDTAGQERYHSL 57
G GK++L F D +G + + L ++ I D+W+ G+ + L
Sbjct: 47 GVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEW--L 104
Query: 58 APMYYRGXXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVK 116
+ Y IT SFE+A + +L+R + ++ + LV NK DL R+V
Sbjct: 105 HDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVS 164
Query: 117 NEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 153
EG A F+ETSA HNV ELF I +++
Sbjct: 165 VSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQV 201
>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 70/157 (44%), Gaps = 7/157 (4%)
Query: 2 GTGKTSLVLRFVK-GQFFDFQESTIGAAFFTQVLSLN---EVTIKFDIWDTAGQERYHSL 57
G GK++L F D +G + + L ++ I D+W+ G+ + L
Sbjct: 16 GVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEW--L 73
Query: 58 APMYYRGXXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVK 116
+ Y IT SFE+A + +L+R + ++ + LV NK DL R+V
Sbjct: 74 HDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVS 133
Query: 117 NEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 153
EG A F+ETSA HNV ELF I +++
Sbjct: 134 VSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQV 170
>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2
Wildtype
Length = 332
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 68/161 (42%), Gaps = 16/161 (9%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
GKT L++ + F T+ + V+ ++ + +WDTAG E Y L P+
Sbjct: 165 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLEDYDRLRPLS 223
Query: 62 YRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEEKR------- 113
Y + + S SF + KW E+ R PN + LV K+DL + +
Sbjct: 224 YPQTDVFLICFSLVSPASFHHVRAKWYPEV-RHHCPNTPIILVGTKLDLRDDKDTIEKLK 282
Query: 114 -----KVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYE 148
+ +G A+E G + +LE SA + + +F E
Sbjct: 283 EKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 323
>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450m Mutant
Length = 332
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 68/161 (42%), Gaps = 16/161 (9%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
GKT L++ + F T+ + V+ ++ + +WDTAG E Y L P+
Sbjct: 165 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLEDYDRLRPLS 223
Query: 62 YRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEEKR------- 113
Y + + S SF + KW E+ R PN + LV K+DL + +
Sbjct: 224 YPQTDVFLICFSLVSPASFHHVRAKWYPEV-RHHCPNTPIILVGTKLDLRDDKDTIEKLK 282
Query: 114 -----KVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYE 148
+ +G A+E G + +LE SA + + +F E
Sbjct: 283 EKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 323
>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450a Mutant
Length = 332
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 68/161 (42%), Gaps = 16/161 (9%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
GKT L++ + F T+ + V+ ++ + +WDTAG E Y L P+
Sbjct: 165 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLEDYDRLRPLS 223
Query: 62 YRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEEKR------- 113
Y + + S SF + KW E+ R PN + LV K+DL + +
Sbjct: 224 YPQTDVFLICFSLVSPASFHHVRAKWYPEV-RHHCPNTPIILVGTKLDLRDDKDTIEKLK 282
Query: 114 -----KVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYE 148
+ +G A+E G + +LE SA + + +F E
Sbjct: 283 EKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 323
>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex
pdb|2ATX|B Chain B, Crystal Structure Of The Tc10 Gppnhp Complex
Length = 194
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 71/161 (44%), Gaps = 16/161 (9%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
GKT L++ + F + T+ + V ++ ++DTAGQE Y L P+
Sbjct: 28 AVGKTCLLMSYANDAFPEEYVPTVFDHYAVSV-TVGGKQYLLGLYDTAGQEDYDRLRPLS 86
Query: 62 YRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEEKRK------ 114
Y + + + SF+ K +WV EL+ PN+ L+ ++DL + K
Sbjct: 87 YPMTDVFLICFSVVNPASFQNVKEEWVPELKEYA-PNVPFLLIGTQIDLRDDPKTLARLN 145
Query: 115 ------VKNEEGELYAQENG-LSFLETSAKSAHNVNELFYE 148
+ E+G+ A+E G ++E SA + + +F E
Sbjct: 146 DMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDE 186
>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
pdb|1A4R|A Chain A, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
Length = 191
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 72/173 (41%), Gaps = 18/173 (10%)
Query: 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPM 60
+ GKT L++ + +F T+ + V+ E ++DTAGQE Y L P+
Sbjct: 12 VAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGE-PYTLGLFDTAGQEDYDRLRPL 70
Query: 61 YYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE-------- 111
Y + + S SFE K KWV E+ P LV ++DL +
Sbjct: 71 SYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDDPSTIEKL 129
Query: 112 ----KRKVKNEEGELYAQE-NGLSFLETSAKSAHNVNELFYEIAKRLAEVNPS 159
++ + E E A++ + ++E SA + + +F E LA + P
Sbjct: 130 AKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI--LAALEPP 180
>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex
pdb|2DFK|D Chain D, Crystal Structure Of The Cdc42-Collybistin Ii Complex
Length = 194
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 71/172 (41%), Gaps = 18/172 (10%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
GKT L++ + +F T+ + V+ E ++DTAGQE Y L P+
Sbjct: 16 AVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGE-PYTLGLFDTAGQEDYDRLRPLS 74
Query: 62 YRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE--------- 111
Y + + S SFE K KWV E+ P LV ++DL +
Sbjct: 75 YPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDDPSTIEKLA 133
Query: 112 ---KRKVKNEEGELYAQE-NGLSFLETSAKSAHNVNELFYEIAKRLAEVNPS 159
++ + E E A++ + ++E SA + + +F E LA + P
Sbjct: 134 KNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI--LAALEPP 183
>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42.
pdb|2WMN|B Chain B, Structure Of The Complex Between Dock9 And Cdc42-Gdp.
pdb|2WMO|B Chain B, Structure Of The Complex Between Dock9 And Cdc42
Length = 190
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 71/172 (41%), Gaps = 18/172 (10%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
GKT L++ + +F T+ + V+ E ++DTAGQE Y L P+
Sbjct: 15 AVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGE-PYTLGLFDTAGQEDYDRLRPLS 73
Query: 62 YRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE--------- 111
Y + + S SFE K KWV E+ P LV ++DL +
Sbjct: 74 YPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDDPSTIEKLA 132
Query: 112 ---KRKVKNEEGELYAQE-NGLSFLETSAKSAHNVNELFYEIAKRLAEVNPS 159
++ + E E A++ + ++E SA + + +F E LA + P
Sbjct: 133 KNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI--LAALEPP 182
>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In
Complex With The Multifunctional Regulator Rhogdi
Length = 191
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 71/172 (41%), Gaps = 18/172 (10%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
GKT L++ + +F T+ + V+ E ++DTAGQE Y L P+
Sbjct: 16 AVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGE-PYTLGLFDTAGQEDYDRLRPLS 74
Query: 62 YRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE--------- 111
Y + + S SFE K KWV E+ P LV ++DL +
Sbjct: 75 YPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDDPSTIEKLA 133
Query: 112 ---KRKVKNEEGELYAQE-NGLSFLETSAKSAHNVNELFYEIAKRLAEVNPS 159
++ + E E A++ + ++E SA + + +F E LA + P
Sbjct: 134 KNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI--LAALEPP 183
>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
pdb|2QRZ|B Chain B, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
Length = 189
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 71/172 (41%), Gaps = 18/172 (10%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
GKT L++ + +F T+ + V+ E ++DTAGQE Y L P+
Sbjct: 13 AVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGE-PYTLGLFDTAGQEDYDRLRPLS 71
Query: 62 YRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE--------- 111
Y + + S SFE K KWV E+ P LV ++DL +
Sbjct: 72 YPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDDPSTIEKLA 130
Query: 112 ---KRKVKNEEGELYAQE-NGLSFLETSAKSAHNVNELFYEIAKRLAEVNPS 159
++ + E E A++ + ++E SA + + +F E LA + P
Sbjct: 131 KNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI--LAALEPP 180
>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZ7|D Chain D, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZG|B Chain B, Dbscdc42(Y889f)
pdb|1KZG|D Chain D, Dbscdc42(Y889f)
pdb|1KI1|A Chain A, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
pdb|1KI1|C Chain C, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
Length = 188
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 71/172 (41%), Gaps = 18/172 (10%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
GKT L++ + +F T+ + V+ E ++DTAGQE Y L P+
Sbjct: 13 AVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGE-PYTLGLFDTAGQEDYDRLRPLS 71
Query: 62 YRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE--------- 111
Y + + S SFE K KWV E+ P LV ++DL +
Sbjct: 72 YPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDDPSTIEKLA 130
Query: 112 ---KRKVKNEEGELYAQE-NGLSFLETSAKSAHNVNELFYEIAKRLAEVNPS 159
++ + E E A++ + ++E SA + + +F E LA + P
Sbjct: 131 KNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI--LAALEPP 180
>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures
Length = 194
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 71/172 (41%), Gaps = 18/172 (10%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
GKT L++ + +F T+ + V+ E ++DTAGQE Y L P+
Sbjct: 20 AVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGE-PYTLGLFDTAGQEDYDRLRPLS 78
Query: 62 YRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE--------- 111
Y + + S SFE K KWV E+ P LV ++DL +
Sbjct: 79 YPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDDPSTIEKLA 137
Query: 112 ---KRKVKNEEGELYAQE-NGLSFLETSAKSAHNVNELFYEIAKRLAEVNPS 159
++ + E E A++ + ++E SA + + +F E LA + P
Sbjct: 138 KNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI--LAALEPP 187
>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The
Crib Domain Of Human P21-Activated Kinase 6 (Pak6)
Length = 192
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 71/172 (41%), Gaps = 18/172 (10%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
GKT L++ + +F T+ + V+ E ++DTAGQE Y L P+
Sbjct: 14 AVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGE-PYTLGLFDTAGQEDYDRLRPLS 72
Query: 62 YRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE--------- 111
Y + + S SFE K KWV E+ P LV ++DL +
Sbjct: 73 YPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDDPSTIEKLA 131
Query: 112 ---KRKVKNEEGELYAQE-NGLSFLETSAKSAHNVNELFYEIAKRLAEVNPS 159
++ + E E A++ + ++E SA + + +F E LA + P
Sbjct: 132 KNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI--LAALEPP 181
>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.
pdb|2NGR|A Chain A, Transition State Complex For Gtp Hydrolysis By Cdc42:
Comparisons Of The High Resolution Structures For Cdc42
Bound To The Active And Catalytically Compromised Forms
Of The Cdc42-gap.
pdb|4ITR|C Chain C, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
pdb|4ITR|D Chain D, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
Length = 191
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 71/172 (41%), Gaps = 18/172 (10%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
GKT L++ + +F T+ + V+ E ++DTAGQE Y L P+
Sbjct: 13 AVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGE-PYTLGLFDTAGQEDYDRLRPLS 71
Query: 62 YRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE--------- 111
Y + + S SFE K KWV E+ P LV ++DL +
Sbjct: 72 YPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDDPSTIEKLA 130
Query: 112 ---KRKVKNEEGELYAQE-NGLSFLETSAKSAHNVNELFYEIAKRLAEVNPS 159
++ + E E A++ + ++E SA + + +F E LA + P
Sbjct: 131 KNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI--LAALEPP 180
>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain
Sopb In Complex With Cdc42
Length = 193
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 71/172 (41%), Gaps = 18/172 (10%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
GKT L++ + +F T+ + V+ E ++DTAGQE Y L P+
Sbjct: 23 AVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGE-PYTLGLFDTAGQEDYDRLRPLS 81
Query: 62 YRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE--------- 111
Y + + S SFE K KWV E+ P LV ++DL +
Sbjct: 82 YPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDDPSTIEKLA 140
Query: 112 ---KRKVKNEEGELYAQE-NGLSFLETSAKSAHNVNELFYEIAKRLAEVNPS 159
++ + E E A++ + ++E SA + + +F E LA + P
Sbjct: 141 KNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI--LAALEPP 190
>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|E Chain E, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|F Chain F, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
Length = 177
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 67/161 (41%), Gaps = 16/161 (9%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
GKT L++ + +F T+ + V+ E ++DTAGQE Y L P+
Sbjct: 13 AVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGE-PYTLGLFDTAGQEDYDRLRPLS 71
Query: 62 YRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE--------- 111
Y + + S SFE K KWV E+ P LV ++DL +
Sbjct: 72 YPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDDPSTIEKLA 130
Query: 112 ---KRKVKNEEGELYAQE-NGLSFLETSAKSAHNVNELFYE 148
++ + E E A++ + ++E SA + + +F E
Sbjct: 131 KNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDE 171
>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
pdb|3EG5|C Chain C, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
Length = 178
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 67/161 (41%), Gaps = 16/161 (9%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
GKT L++ + +F T+ + V+ E ++DTAGQE Y L P+
Sbjct: 13 AVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGE-PYTLGLFDTAGQEDYDRLRPLS 71
Query: 62 YRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE--------- 111
Y + + S SFE K KWV E+ P LV ++DL +
Sbjct: 72 YPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDDPSTIEKLA 130
Query: 112 ---KRKVKNEEGELYAQE-NGLSFLETSAKSAHNVNELFYE 148
++ + E E A++ + ++E SA + + +F E
Sbjct: 131 KNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDE 171
>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex
Length = 182
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 67/161 (41%), Gaps = 16/161 (9%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
GKT L++ + +F T+ + V+ E ++DTAGQE Y L P+
Sbjct: 17 AVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGE-PYTLGLFDTAGQEDYDRLRPLS 75
Query: 62 YRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE--------- 111
Y + + S SFE K KWV E+ P LV ++DL +
Sbjct: 76 YPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDDPSTIEKLA 134
Query: 112 ---KRKVKNEEGELYAQE-NGLSFLETSAKSAHNVNELFYE 148
++ + E E A++ + ++E SA + + +F E
Sbjct: 135 KNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 175
>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
pdb|1GZS|C Chain C, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
Length = 180
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 67/161 (41%), Gaps = 16/161 (9%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
GKT L++ + +F T+ + V+ E ++DTAGQE Y L P+
Sbjct: 15 AVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGE-PYTLGLFDTAGQEDYDRLRPLS 73
Query: 62 YRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE--------- 111
Y + + S SFE K KWV E+ P LV ++DL +
Sbjct: 74 YPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDDPSTIEKLA 132
Query: 112 ---KRKVKNEEGELYAQE-NGLSFLETSAKSAHNVNELFYE 148
++ + E E A++ + ++E SA + + +F E
Sbjct: 133 KNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 173
>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase
Binding Domain Of Wasp
Length = 179
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 71/171 (41%), Gaps = 18/171 (10%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
GKT L++ + +F T+ + V+ E ++DTAGQE Y L P+
Sbjct: 13 AVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGE-PYTLGLFDTAGQEDYDRLRPLS 71
Query: 62 YRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE--------- 111
Y + + S SFE K KWV E+ P LV ++DL +
Sbjct: 72 YPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDDPSTIEKLA 130
Query: 112 ---KRKVKNEEGELYAQE-NGLSFLETSAKSAHNVNELFYEIAKRLAEVNP 158
++ + E E A++ + ++E SA + + +F E LA + P
Sbjct: 131 KNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI--LAALEP 179
>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide
Derived From P-21 Activated Kinase, Nmr, 20 Structures
Length = 178
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 67/161 (41%), Gaps = 16/161 (9%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
GKT L++ + +F T+ + V+ E ++DTAGQE Y L P+
Sbjct: 13 AVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGE-PYTLGLFDTAGQEDYDRLRPLS 71
Query: 62 YRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE--------- 111
Y + + S SFE K KWV E+ P LV ++DL +
Sbjct: 72 YPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDDPSTIEKLA 130
Query: 112 ---KRKVKNEEGELYAQE-NGLSFLETSAKSAHNVNELFYE 148
++ + E E A++ + ++E SA + + +F E
Sbjct: 131 KNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 171
>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYF|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
Length = 203
Score = 50.1 bits (118), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 74/190 (38%), Gaps = 35/190 (18%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
GKT L++ + F T+ + V+ ++ + +WDTAGQE Y L P+
Sbjct: 15 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQEDYDRLRPLS 73
Query: 62 YRGXXXXXXXYDIT-------------------SMDSFERAK-KWVQELQRQGNPNLIMF 101
Y DIT S SFE + KW E+ R PN +
Sbjct: 74 YPQTVGETYGKDITSRGKDKPIADVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPII 132
Query: 102 LVANKVDLEEKR------------KVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYE 148
LV K+DL + + + +G A+E G + +LE SA + + +F E
Sbjct: 133 LVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 192
Query: 149 IAKRLAEVNP 158
+ + P
Sbjct: 193 AIRAVLCPPP 202
>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex
pdb|1AN0|B Chain B, Cdc42hs-Gdp Complex
Length = 190
Score = 49.7 bits (117), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 70/172 (40%), Gaps = 18/172 (10%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
GKT L++ + +F T+ + V E ++DTAGQE Y L P+
Sbjct: 13 AVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVXIGGE-PYTLGLFDTAGQEDYDRLRPLS 71
Query: 62 YRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE--------- 111
Y + + S SFE K KWV E+ P LV ++DL +
Sbjct: 72 YPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDDPSTIEKLA 130
Query: 112 ---KRKVKNEEGELYAQE-NGLSFLETSAKSAHNVNELFYEIAKRLAEVNPS 159
++ + E E A++ + ++E SA + + +F E LA + P
Sbjct: 131 KNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI--LAALEPP 180
>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q72|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7Q|A Chain A, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
pdb|3Q7Q|B Chain B, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
Length = 166
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 72 YDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLS 130
Y +T SFE+A + +L+R + ++ + LV NK DL R+V +EG A
Sbjct: 80 YSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCK 139
Query: 131 FLETSAKSAHNVNELFYEIAKRL 153
F+ETSA HNV LF + +++
Sbjct: 140 FIETSAALHHNVQALFEGVVRQI 162
>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase
pdb|2DPX|B Chain B, Crystal Structure Of Human Rad Gtpase
Length = 174
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 73/158 (46%), Gaps = 13/158 (8%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLN--EVTIK-FDIWDTAGQERY--HS 56
G GK++L F G D E+ + + + ++ E ++ +DIW+ G H
Sbjct: 17 GVGKSALARIF--GGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHC 74
Query: 57 LAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKV 115
+A Y +T SFE+A + +L+R + ++ + LV NK DL R+V
Sbjct: 75 MAM-----GDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREV 129
Query: 116 KNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 153
+EG A F+ETSA HNV LF + +++
Sbjct: 130 SVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 167
>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
pdb|3QBV|C Chain C, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
Length = 178
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 66/161 (40%), Gaps = 16/161 (9%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
GKT L++ + +F T+ + V+ E + DTAGQE Y L P+
Sbjct: 13 AVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGE-PYTLGLRDTAGQEDYDRLRPLS 71
Query: 62 YRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE--------- 111
Y + + S SFE K KWV E+ P LV ++DL +
Sbjct: 72 YPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDDPSTIEKLA 130
Query: 112 ---KRKVKNEEGELYAQE-NGLSFLETSAKSAHNVNELFYE 148
++ + E E A++ + ++E SA + + +F E
Sbjct: 131 KNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 171
>pdb|2KB0|A Chain A, Cdc42(T35a)
Length = 178
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 67/163 (41%), Gaps = 20/163 (12%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAF--FTQVLSLNEVTIKFDIWDTAGQERYHSLAP 59
GKT L++ + +F + A F + + + ++DTAGQE Y L P
Sbjct: 13 AVGKTCLLISYTTNKF---PSEYVPAVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRP 69
Query: 60 MYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE------- 111
+ Y + + S SFE K KWV E+ P LV ++DL +
Sbjct: 70 LSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDDPSTIEK 128
Query: 112 -----KRKVKNEEGELYAQE-NGLSFLETSAKSAHNVNELFYE 148
++ + E E A++ + ++E SA + + +F E
Sbjct: 129 LAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 171
>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp
pdb|2GJS|B Chain B, The Crystal Structure Of Human Rrad In Complex With Gdp
Length = 176
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 73/158 (46%), Gaps = 13/158 (8%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLN--EVTIK-FDIWDTAGQERY--HS 56
G GK++L F G D E+ + + + ++ E ++ +DIW+ G H
Sbjct: 17 GVGKSALARIF--GGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHC 74
Query: 57 LAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKV 115
+A Y +T SFE+A + +L+R + ++ + LV NK DL R+V
Sbjct: 75 MAM-----GDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREV 129
Query: 116 KNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 153
+EG A F+ETSA HNV LF + +++
Sbjct: 130 SVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 167
>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex
With Cdc42 (T17n Mutant)
Length = 195
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 70/172 (40%), Gaps = 18/172 (10%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
GK L++ + +F T+ + V+ E ++DTAGQE Y L P+
Sbjct: 20 AVGKNCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGE-PYTLGLFDTAGQEDYDRLRPLS 78
Query: 62 YRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE--------- 111
Y + + S SFE K KWV E+ P LV ++DL +
Sbjct: 79 YPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDDPSTIEKLA 137
Query: 112 ---KRKVKNEEGELYAQE-NGLSFLETSAKSAHNVNELFYEIAKRLAEVNPS 159
++ + E E A++ + ++E SA + + +F E LA + P
Sbjct: 138 KNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI--LAALEPP 187
>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs
Length = 178
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 66/161 (40%), Gaps = 16/161 (9%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
GKT L++ + + T+ + V+ E ++DTAGQE Y L P+
Sbjct: 13 AVGKTCLLISYTTNKLPSEYVPTVFDNYAVTVMIGGE-PYTLGLFDTAGQEDYDRLRPLS 71
Query: 62 YRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE--------- 111
Y + + S SFE K KWV E+ P LV ++DL +
Sbjct: 72 YPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDDPSTIEKLA 130
Query: 112 ---KRKVKNEEGELYAQE-NGLSFLETSAKSAHNVNELFYE 148
++ + E E A++ + ++E SA + + +F E
Sbjct: 131 KNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 171
>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
pdb|1NF3|B Chain B, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
Length = 195
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 70/172 (40%), Gaps = 18/172 (10%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
GKT L++ + +F T+ + V+ E ++DTAG E Y L P+
Sbjct: 17 AVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGE-PYTLGLFDTAGLEDYDRLRPLS 75
Query: 62 YRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE--------- 111
Y + + S SFE K KWV E+ P LV ++DL +
Sbjct: 76 YPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDDPSTIEKLA 134
Query: 112 ---KRKVKNEEGELYAQE-NGLSFLETSAKSAHNVNELFYEIAKRLAEVNPS 159
++ + E E A++ + ++E SA + + +F E LA + P
Sbjct: 135 KNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI--LAALEPP 184
>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp
Length = 195
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 52/115 (45%), Gaps = 12/115 (10%)
Query: 38 EVT-IKFDIW---DTAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQ 93
EVT + +DIW D G R H L + + +T SF + + + L R
Sbjct: 71 EVTLVVYDIWEQGDAGGWLRDHCL-----QTGDAFLIVFSVTDRRSFSKVPETLLRL-RA 124
Query: 94 GNP--NLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELF 146
G P +L + LV NK DL R+V EEG A +ETSA HN ELF
Sbjct: 125 GRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELF 179
>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex
pdb|1E0A|A Chain A, Cdc42 Complexed With The Gtpase Binding Domain Of P21
Activated Kinase
Length = 184
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 70/172 (40%), Gaps = 18/172 (10%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
GKT L++ + +F T+ + V+ E ++DTAG E Y L P+
Sbjct: 13 AVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGE-PYTLGLFDTAGLEDYDRLRPLS 71
Query: 62 YRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE--------- 111
Y + + S SFE K KWV E+ P LV ++DL +
Sbjct: 72 YPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDDPSTIEKLA 130
Query: 112 ---KRKVKNEEGELYAQE-NGLSFLETSAKSAHNVNELFYEIAKRLAEVNPS 159
++ + E E A++ + ++E SA + + +F E LA + P
Sbjct: 131 KNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI--LAALEPP 180
>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
Length = 188
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 67/150 (44%), Gaps = 18/150 (12%)
Query: 3 TGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYY 62
+GKT+ V GQF + T+G F + ++ VTIK +WD GQ R+ S+ Y
Sbjct: 33 SGKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGNVTIK--LWDIGGQPRFRSMWERYC 88
Query: 63 RGXXXXXXXYDITSMDSFERAKKWVQEL----QRQGNPNLIMFLVANKVD----LEEKRK 114
RG D + E +K + L Q QG P L++ NK D L+EK
Sbjct: 89 RGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVL---GNKRDLPGALDEKEL 145
Query: 115 VKNEEGELYA-QENGLSFLETSAKSAHNVN 143
+ E+ L A Q+ + S K N++
Sbjct: 146 I--EKMNLSAIQDREICCYSISCKEKDNID 173
>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c
Length = 186
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 68/150 (45%), Gaps = 18/150 (12%)
Query: 3 TGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYY 62
+GKT+ V GQF + T+G F + ++ VTIK IWD GQ R+ S+ Y
Sbjct: 33 SGKTTFVNVIASGQFSEDMIPTVG--FNMRKVTKGNVTIK--IWDIGGQPRFRSMWERYC 88
Query: 63 RGXXXXXXXYDITSMDSFERAKKWVQEL----QRQGNPNLIMFLVANKVD----LEEKRK 114
RG D + E ++ + L Q QG P L++ NK D L+EK+
Sbjct: 89 RGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVL---GNKRDLPNALDEKQL 145
Query: 115 VKNEEGELYA-QENGLSFLETSAKSAHNVN 143
+ E+ L A Q+ + S K N++
Sbjct: 146 I--EKMNLSAIQDREICCYSISCKEKDNID 173
>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
pdb|2REX|D Chain D, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
Length = 197
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 72/160 (45%), Gaps = 24/160 (15%)
Query: 3 TGKTSLVLRFVKGQFFDFQESTIGAAF--FTQVLSLNEVTIKFDIWDTAGQERYHSLAPM 60
GKT+++ K + E+ + F +T L E ++ +WDT+G Y ++ P+
Sbjct: 21 CGKTAMLQVLAKDCY---PETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPL 77
Query: 61 YYRGXXXXXXXYDITSMDSFERA-KKWVQELQRQGNPNLIMFLVANKVDL---------- 109
Y +DI+ ++ + A KKW E+ P+ + L+ K DL
Sbjct: 78 CYSDSDAVLLCFDISRPETVDSALKKWRTEI-LDYCPSTRVLLIGCKTDLRTDLSTLMEL 136
Query: 110 --EEKRKVKNEEGELYAQENGLS-FLE----TSAKSAHNV 142
+++ + E+G A++ G +LE TS KS H++
Sbjct: 137 SHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSI 176
>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
pdb|2CLS|B Chain B, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
Length = 198
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 72/160 (45%), Gaps = 24/160 (15%)
Query: 3 TGKTSLVLRFVKGQFFDFQESTIGAAF--FTQVLSLNEVTIKFDIWDTAGQERYHSLAPM 60
GKT+++ K + E+ + F +T L E ++ +WDT+G Y ++ P+
Sbjct: 22 CGKTAMLQVLAKDCY---PETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPL 78
Query: 61 YYRGXXXXXXXYDITSMDSFERA-KKWVQELQRQGNPNLIMFLVANKVDL---------- 109
Y +DI+ ++ + A KKW E+ P+ + L+ K DL
Sbjct: 79 CYSDSDAVLLCFDISRPETVDSALKKWRTEI-LDYCPSTRVLLIGCKTDLRTDLSTLMEL 137
Query: 110 --EEKRKVKNEEGELYAQENGLS-FLE----TSAKSAHNV 142
+++ + E+G A++ G +LE TS KS H++
Sbjct: 138 SHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSI 177
>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1
Length = 214
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 72/160 (45%), Gaps = 24/160 (15%)
Query: 3 TGKTSLVLRFVKGQFFDFQESTIGAAF--FTQVLSLNEVTIKFDIWDTAGQERYHSLAPM 60
GKT+++ K + E+ + F +T L E ++ +WDT+G Y ++ P+
Sbjct: 38 CGKTAMLQVLAKDCY---PETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPL 94
Query: 61 YYRGXXXXXXXYDITSMDSFERA-KKWVQELQRQGNPNLIMFLVANKVDL---------- 109
Y +DI+ ++ + A KKW E+ P+ + L+ K DL
Sbjct: 95 CYSDSDAVLLCFDISRPETVDSALKKWRTEI-LDYCPSTRVLLIGCKTDLRTDLSTLMEL 153
Query: 110 --EEKRKVKNEEGELYAQENGLS-FLE----TSAKSAHNV 142
+++ + E+G A++ G +LE TS KS H++
Sbjct: 154 SHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSI 193
>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
pdb|3Q85|B Chain B, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
Length = 169
Score = 47.0 bits (110), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 51/115 (44%), Gaps = 12/115 (10%)
Query: 38 EVT-IKFDIW---DTAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQ 93
EVT I +DIW D G + H L + +T SF + + + L R
Sbjct: 50 EVTLIVYDIWEQGDAGGWLQDHCLQT-----GDAFLIVFSVTDRRSFSKVPETLLRL-RA 103
Query: 94 GNP--NLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELF 146
G P +L + LV NK DL R+V EEG A +ETSA HN ELF
Sbjct: 104 GRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELF 158
>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
pdb|4AII|B Chain B, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
Length = 180
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 51/115 (44%), Gaps = 12/115 (10%)
Query: 38 EVT-IKFDIW---DTAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQ 93
EVT I +DIW D G + H L + +T SF + + + L R
Sbjct: 60 EVTLIVYDIWEQGDAGGWLQDHCLQT-----GDAFLIVFSVTDRRSFSKVPETLLRL-RA 113
Query: 94 GNP--NLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELF 146
G P +L + LV NK DL R+V EEG A +ETSA HN ELF
Sbjct: 114 GRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELF 168
>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
(Arl10b)
Length = 193
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 67/150 (44%), Gaps = 18/150 (12%)
Query: 3 TGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYY 62
+GKT+ V GQF + T+G F + ++ VTIK +WD GQ R+ S+ Y
Sbjct: 42 SGKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGNVTIK--LWDIGGQPRFRSMWERYC 97
Query: 63 RGXXXXXXXYDITSMDSFERAKKWVQEL----QRQGNPNLIMFLVANKVD----LEEKRK 114
RG D + E +K + L Q QG P L++ NK D L+EK
Sbjct: 98 RGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVL---GNKRDLPGALDEKEL 154
Query: 115 VKNEEGELYA-QENGLSFLETSAKSAHNVN 143
+ E+ L A Q+ + S K N++
Sbjct: 155 I--EKMNLSAIQDREICCYSISCKEKDNID 182
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 46.2 bits (108), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 52/117 (44%), Gaps = 12/117 (10%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
GKT+++ + GQ +TI F V ++ +KF++WD GQ++ L Y
Sbjct: 332 AAGKTTILYKLKLGQSV----TTIPTVGF-NVETVTYKNVKFNVWDVGGQDKIRPLWRHY 386
Query: 62 YRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNP----NLIMFLVANKVDLEEKRK 114
Y G D D + A+ QEL R N + I+ + ANK DL + K
Sbjct: 387 YTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREMRDAIILIFANKQDLPDAMK 440
>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex
Length = 162
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 12/115 (10%)
Query: 4 GKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYR 63
GKT+++ + GQ +TI F V ++ +KF++WD GQ++ L YY
Sbjct: 12 GKTTILYKLKLGQSV----TTIPTVGF-NVETVTYKNVKFNVWDVGGQDKIRPLWRHYYT 66
Query: 64 GXXXXXXXYDITSMDSFERAKKWVQELQRQGNP----NLIMFLVANKVDLEEKRK 114
G D D + A+ QEL R N + I+ + ANK DL + K
Sbjct: 67 GTQGLIFVVDCADRDRIDEAR---QELHRIINDREXRDAIILIFANKQDLPDAXK 118
>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp
Length = 174
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 12/115 (10%)
Query: 4 GKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYR 63
GKT+++ + GQ +TI F V ++ +KF++WD GQ++ L YY
Sbjct: 24 GKTTILYKLKLGQ----SVTTIPTVGF-NVETVTYKNVKFNVWDVGGQDKIRPLWRHYYT 78
Query: 64 GXXXXXXXYDITSMDSFERAKKWVQELQRQGNP----NLIMFLVANKVDLEEKRK 114
G D D + A+ QEL R N + I+ + ANK DL + K
Sbjct: 79 GTQGLIFVVDCADRDRIDEAR---QELHRIINDREMRDAIILIFANKQDLPDAMK 130
>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By
Human Arf6-Gtp
pdb|2A5F|A Chain A, Cholera Toxin A1 Subunit Bound To Its Substrate, Nad+, And
Its Human Protein Activator, Arf6
pdb|2J5X|A Chain A, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
pdb|2J5X|B Chain B, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
Length = 175
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 12/115 (10%)
Query: 4 GKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYR 63
GKT+++ + GQ +TI F V ++ +KF++WD GQ++ L YY
Sbjct: 25 GKTTILYKLKLGQ----SVTTIPTVGF-NVETVTYKNVKFNVWDVGGQDKIRPLWRHYYT 79
Query: 64 GXXXXXXXYDITSMDSFERAKKWVQELQRQGNP----NLIMFLVANKVDLEEKRK 114
G D D + A+ QEL R N + I+ + ANK DL + K
Sbjct: 80 GTQGLIFVVDCADRDRIDEAR---QELHRIINDREMRDAIILIFANKQDLPDAMK 131
>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex
pdb|4FME|F Chain F, Espg-Rab1-Arf6 Complex
Length = 160
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 52/117 (44%), Gaps = 12/117 (10%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
GKT+++ + GQ +TI F V ++ +KF++WD GQ++ L Y
Sbjct: 10 AAGKTTILYKLKLGQ----SVTTIPTVGF-NVETVTYKNVKFNVWDVGGQDKIRPLWRHY 64
Query: 62 YRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNP----NLIMFLVANKVDLEEKRK 114
Y G D D + A+ QEL R N + I+ + ANK DL + K
Sbjct: 65 YTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREMRDAIILIFANKQDLPDAMK 118
>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp
pdb|3N5C|B Chain B, Crystal Structure Of Arf6delta13 Complexed With Gdp
Length = 162
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 52/117 (44%), Gaps = 12/117 (10%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
GKT+++ + GQ +TI F V ++ +KF++WD GQ++ L Y
Sbjct: 10 AAGKTTILYKLKLGQSV----TTIPTVGF-NVETVTYKNVKFNVWDVGGQDKIRPLWRHY 64
Query: 62 YRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNP----NLIMFLVANKVDLEEKRK 114
Y G D D + A+ QEL R N + I+ + ANK DL + K
Sbjct: 65 YTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREMRDAIILIFANKQDLPDAMK 118
>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l)
Length = 175
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 51/115 (44%), Gaps = 12/115 (10%)
Query: 4 GKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYR 63
GKT+++ + GQ +TI F V ++ +KF++WD G ++ L YY
Sbjct: 25 GKTTILYKLKLGQ----SVTTIPTVGF-NVETVTYKNVKFNVWDVGGLDKIRPLWRHYYT 79
Query: 64 GXXXXXXXYDITSMDSFERAKKWVQELQRQGNP----NLIMFLVANKVDLEEKRK 114
G D D + A+ QEL R N + I+ + ANK DL + K
Sbjct: 80 GTQGLIFVVDCADRDRIDEAR---QELHRIINDREMRDAIILIFANKQDLPDAMK 131
>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|C Chain C, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|E Chain E, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|G Chain G, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
Length = 172
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 51/117 (43%), Gaps = 12/117 (10%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
GKT+++ + GQ +TI F V ++ +KF++WD G ++ L Y
Sbjct: 12 AAGKTTILYKLKLGQSV----TTIPTVGF-NVETVTYKNVKFNVWDVGGLDKIRPLWRHY 66
Query: 62 YRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNP----NLIMFLVANKVDLEEKRK 114
Y G D D + A+ QEL R N + I+ + ANK DL + K
Sbjct: 67 YTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREMRDAIILIFANKQDLPDAMK 120
>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|B Chain B, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|E Chain E, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
Length = 165
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 51/117 (43%), Gaps = 12/117 (10%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
GKT+++ + GQ +TI F V ++ +KF++WD G ++ L Y
Sbjct: 13 AAGKTTILYKLKLGQ----SVTTIPTVGF-NVETVTYKNVKFNVWDVGGLDKIRPLWRHY 67
Query: 62 YRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNP----NLIMFLVANKVDLEEKRK 114
Y G D D + A+ QEL R N + I+ + ANK DL + K
Sbjct: 68 YTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREMRDAIILIFANKQDLPDAMK 121
>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2
(Scarf2) Complexed With Gdp-3'p At 1.6a Resolution
Length = 181
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 48/111 (43%), Gaps = 6/111 (5%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
G GKT+++ + G+ +TI F V ++ I F +WD GQ+R SL Y
Sbjct: 27 GAGKTTVLYKLKLGEVI----TTIPTIGF-NVETVQYKNISFTVWDVGGQDRIRSLWRHY 81
Query: 62 YRGXXXXXXXYDITSMDSFERAKKWVQELQRQGN-PNLIMFLVANKVDLEE 111
YR D A++ +Q + + N + + ANK DL E
Sbjct: 82 YRNTEGVIFVIDSNDRSRIGEAREVMQRMLNEDELRNAVWLVFANKQDLPE 132
>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
pdb|3TJZ|D Chain D, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
Length = 164
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 48/111 (43%), Gaps = 6/111 (5%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
G GKT+++ + G+ +TI F V ++ I F +WD GQ+R SL Y
Sbjct: 10 GAGKTTVLYKLKLGEVI----TTIPTIGF-NVETVQYKNISFTVWDVGGQDRIRSLWRHY 64
Query: 62 YRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLV-ANKVDLEE 111
YR D A++ +Q + + +LV ANK DL E
Sbjct: 65 YRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVFANKQDLPE 115
>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein,
Gdp- Bound
Length = 181
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 48/111 (43%), Gaps = 6/111 (5%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
G GKT+++ + G+ +TI F V ++ I F +WD GQ+R SL Y
Sbjct: 27 GAGKTTVLYKLKLGEVI----TTIPTIGF-NVETVQYKNISFTVWDVGGQDRIRSLWRHY 81
Query: 62 YRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLV-ANKVDLEE 111
YR D A++ +Q + + +LV ANK DL E
Sbjct: 82 YRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVFANKQDLPE 132
>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
pdb|3RD1|B Chain B, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
Length = 178
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 49/116 (42%), Gaps = 12/116 (10%)
Query: 4 GKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYR 63
GKTS++ + G+ +TI F V ++ I F +WD GQ++ L YY+
Sbjct: 29 GKTSILYKLKLGEIV----TTIPTIGF-NVETVEYKNISFTVWDVGGQDKIRPLWRHYYQ 83
Query: 64 GXXXXXXXYDITSMDSFERAKKWVQELQRQGNP----NLIMFLVANKVDLEEKRKV 115
D D A+ +EL + N N I+ + ANK DL + +
Sbjct: 84 NTQAIIFVVDSNDRDRIGEAR---EELMKMLNEDEMRNAILLVFANKHDLPQAMSI 136
>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 171
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/121 (21%), Positives = 61/121 (50%), Gaps = 7/121 (5%)
Query: 2 GTGKTSLVLRFVKGQFFDF--QESTIG---AAFFTQVLSLNEVTIKFDIWDTAGQERYHS 56
G+GKT+L+ + K + D Q +T+G + Q+ + + ++WD AG+E ++S
Sbjct: 10 GSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYS 69
Query: 57 LAPMYYRGXXXXXXXYDITSMDS-FERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKV 115
P + YD++ + + K W+ ++ + + + ++ LV +D+ ++++
Sbjct: 70 THPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSSPVI-LVGTHLDVSDEKQR 128
Query: 116 K 116
K
Sbjct: 129 K 129
>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
pdb|2ZEJ|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 184
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/121 (21%), Positives = 61/121 (50%), Gaps = 7/121 (5%)
Query: 2 GTGKTSLVLRFVKGQFFDF--QESTIG---AAFFTQVLSLNEVTIKFDIWDTAGQERYHS 56
G+GKT+L+ + K + D Q +T+G + Q+ + + ++WD AG+E ++S
Sbjct: 12 GSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYS 71
Query: 57 LAPMYYRGXXXXXXXYDITSMDS-FERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKV 115
P + YD++ + + K W+ ++ + + + ++ LV +D+ ++++
Sbjct: 72 THPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSSPVI-LVGTHLDVSDEKQR 130
Query: 116 K 116
K
Sbjct: 131 K 131
>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound
Conformation
Length = 181
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 45/111 (40%), Gaps = 6/111 (5%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
G GKT+++ + G+ +TI F V + I F +WD GQ+R SL Y
Sbjct: 27 GAGKTTVLYKLKLGEVI----TTIPTIGF-NVECVQYCNISFTVWDVGGQDRIRSLWRHY 81
Query: 62 YRGXXXXXXXYDITSMDSFERAKKWVQELQRQGN-PNLIMFLVANKVDLEE 111
Y D A++ +Q + + N + ANK DL E
Sbjct: 82 YCNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELCNAAWLVFANKQDLPE 132
>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|B Chain B, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|C Chain C, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|D Chain D, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
Length = 165
Score = 34.3 bits (77), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 59/147 (40%), Gaps = 9/147 (6%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
G GKT+++ R G+ +TI F V ++ +KF +WD GQ Y
Sbjct: 12 GAGKTTILYRLQVGEVV----TTIPTIGF-NVETVTYKNLKFQVWDLGGQTSIRPYWRCY 66
Query: 62 YRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE---KRKVKN 117
Y D D +K + V L+ + I+ + ANK D+E+ ++ N
Sbjct: 67 YSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTPSEMAN 126
Query: 118 EEGELYAQENGLSFLETSAKSAHNVNE 144
G ++ +TSA ++E
Sbjct: 127 ALGLPALKDRKWQIFKTSATKGTGLDE 153
>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
pdb|1MOZ|B Chain B, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
Length = 183
Score = 33.1 bits (74), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 44/108 (40%), Gaps = 6/108 (5%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
G GKT+++ R G+ + TIG F + LS +K ++WD GQ Y
Sbjct: 28 GAGKTTILYRLQIGEVVT-TKPTIG--FNVETLSYK--NLKLNVWDLGGQTSIRPYWRCY 82
Query: 62 YRGXXXXXXXYDITSMDSFERAKKWVQ-ELQRQGNPNLIMFLVANKVD 108
Y D T D A K + LQ + + + + ANK D
Sbjct: 83 YADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQD 130
>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum
Adp-Ribosylation Factor 1
Length = 181
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 47/112 (41%), Gaps = 12/112 (10%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
GKT+++ + G+ +TI F V ++ I F +WD GQ++ L Y
Sbjct: 27 AAGKTTILYKVKLGEVV----TTIPTIGF-NVETVEFRNISFTVWDVGGQDKIRPLWRHY 81
Query: 62 YRGXXXXXXXYDITSMDSFERAKKWVQELQRQGN----PNLIMFLVANKVDL 109
Y D + + A+ +EL R N + I+ + ANK DL
Sbjct: 82 YSNTDGLIFVVDSNDRERIDDAR---EELHRMINEEELKDAIILVFANKQDL 130
>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|B Chain B, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|C Chain C, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|D Chain D, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
Length = 187
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 66/157 (42%), Gaps = 12/157 (7%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTA------GQERYH 55
G GK++L ++F+ +F + + + ++ +++ + + DTA ERY
Sbjct: 31 GAGKSALTVKFLTKRFISEYDPNLEDTYSSEE-TVDHQPVHLRVMDTADLDTPRNCERYL 89
Query: 56 SLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKV 115
+ A + +S E +E QR ++ L+ NK+D+ + R+V
Sbjct: 90 NWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQR----SIPALLLGNKLDMAQYRQV 145
Query: 116 KNEEGELYAQENGLSFLETSA-KSAHNVNELFYEIAK 151
EG A G F E SA +V +F+E +
Sbjct: 146 TKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAVR 182
>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
pdb|3AQ4|B Chain B, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
Length = 184
Score = 32.3 bits (72), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 46/112 (41%), Gaps = 12/112 (10%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
GKT+++ + G+ +TI F V ++ I F +WD GQ++ L Y
Sbjct: 30 AAGKTTILYKLKLGEIV----TTIPTIGF-NVETVEYKNISFTVWDVGGQDKIRPLWRHY 84
Query: 62 YRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNP----NLIMFLVANKVDL 109
++ D D A+ EL R N + ++ + ANK DL
Sbjct: 85 FQNTQGLIFVVDSNDRDRVVEAR---DELHRMLNEDELRDAVLLVFANKQDL 133
>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1
pdb|3DOF|A Chain A, Complex Of Arl2 And Bart, Crystal Form 2
Length = 192
Score = 30.8 bits (68), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 46/109 (42%), Gaps = 10/109 (9%)
Query: 4 GKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYR 63
GKT+++ +F G+ D T+G + +L K +IWD GQ+ S Y+
Sbjct: 28 GKTTILKKF-NGEDIDTISPTLGF----NIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFE 82
Query: 64 GXXXXXXXYDITSMDSFERAKKWVQEL---QRQGNPNLIMFLVANKVDL 109
D + ++ +Q L +R L++F ANK DL
Sbjct: 83 STDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIF--ANKQDL 129
>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4
pdb|1Z6X|B Chain B, Structure Of Human Adp-Ribosylation Factor 4
Length = 180
Score = 30.8 bits (68), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 52/128 (40%), Gaps = 12/128 (9%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
GKT+++ + G+ +TI F V ++ I F +WD GQ+R L Y
Sbjct: 27 AAGKTTILYKLKLGEIV----TTIPTIGF-NVETVEYKNICFTVWDVGGQDRIRPLWKHY 81
Query: 62 YRGXXXXXXXYDITSMDSFERAKKWVQELQR----QGNPNLIMFLVANKVDLEEKRKVKN 117
++ D + ER ++ ELQ+ + ++ L ANK DL +
Sbjct: 82 FQNTQGLIFVVD---SNDRERIQEVADELQKMLLVDELRDAVLLLFANKQDLPNAMAISE 138
Query: 118 EEGELYAQ 125
+L Q
Sbjct: 139 MTDKLGLQ 146
>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1
Length = 186
Score = 30.8 bits (68), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 46/109 (42%), Gaps = 10/109 (9%)
Query: 4 GKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYR 63
GKT+++ +F G+ D T+G + +L K +IWD GQ+ S Y+
Sbjct: 30 GKTTILKKF-NGEDVDTISPTLGF----NIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFE 84
Query: 64 GXXXXXXXYDITSMDSFERAKKWVQEL---QRQGNPNLIMFLVANKVDL 109
D + ++ +Q L +R L++F ANK DL
Sbjct: 85 STDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIF--ANKQDL 131
>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native)
Length = 186
Score = 30.4 bits (67), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 46/109 (42%), Gaps = 10/109 (9%)
Query: 4 GKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYR 63
GKT+++ +F G+ D T+G + +L K +IWD GQ+ S Y+
Sbjct: 30 GKTTILKKF-NGEDVDTISPTLGF----NIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFE 84
Query: 64 GXXXXXXXYDITSMDSFERAKKWVQEL---QRQGNPNLIMFLVANKVDL 109
D + ++ +Q L +R L++F ANK DL
Sbjct: 85 STDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIF--ANKQDL 131
>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet)
Length = 186
Score = 30.0 bits (66), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 46/109 (42%), Gaps = 10/109 (9%)
Query: 4 GKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYR 63
GKT+++ +F G+ D T+G + +L K +IWD GQ+ S Y+
Sbjct: 30 GKTTILKKF-NGEDVDTISPTLGF----NIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFE 84
Query: 64 GXXXXXXXYDITSMDSFERAKKWVQEL---QRQGNPNLIMFLVANKVDL 109
D + ++ +Q L +R L++F ANK DL
Sbjct: 85 STDGLIWVVDSADRQRXQDCQRELQSLLVEERLAGATLLIF--ANKQDL 131
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 46/112 (41%), Gaps = 12/112 (10%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
GKT+++ + G+ +TI F V ++ I F +WD GQ++ L Y
Sbjct: 175 AAGKTTILYKLKLGEIV----TTIPTIGFN-VETVEYKNISFTVWDVGGQDKIRPLWRHY 229
Query: 62 YRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNP----NLIMFLVANKVDL 109
++ D + A+ +EL R + ++ + ANK DL
Sbjct: 230 FQNTQGLIFVVDSNDRERVNEAR---EELMRMLAEDELRDAVLLVFANKQDL 278
>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5
Length = 192
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 48/113 (42%), Gaps = 6/113 (5%)
Query: 4 GKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYR 63
GKT+++ + G+ +TI F V ++ I F +WD GQ++ L Y++
Sbjct: 41 GKTTILYKLKLGEIV----TTIPTIGFN-VETVEYKNICFTVWDVGGQDKIRPLWRHYFQ 95
Query: 64 GXXXXXXXYDITSMDSFERAKKWVQE-LQRQGNPNLIMFLVANKVDLEEKRKV 115
D + + + +Q+ LQ + ++ + ANK D+ V
Sbjct: 96 NTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPV 148
>pdb|2BMJ|A Chain A, Gtpase Like Domain Of Centaurin Gamma 1 (Human)
Length = 178
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 3/92 (3%)
Query: 73 DITSMDSFERAKKWVQELQRQGNPNLIMFLVA--NKVDLEEKRKVKNEEGE-LYAQENGL 129
D S + R + L+ +G L + LV +++ R V + L A
Sbjct: 84 DENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALCADMKRC 143
Query: 130 SFLETSAKSAHNVNELFYEIAKRLAEVNPSRQ 161
S+ ET A NV+ +F E+A+++ + +Q
Sbjct: 144 SYYETCATYGLNVDRVFQEVAQKVVTLRKQQQ 175
>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With
Brefeldin A
pdb|1R8S|A Chain A, Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain Carrying
The Mutation Of The Catalytic Glutamate To Lysine
pdb|1S9D|A Chain A, Arf1[delta 1-17]-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1U81|A Chain A, Delta-17 Human Adp Ribosylation Factor 1 Complexed With
Gdp
Length = 164
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 46/112 (41%), Gaps = 12/112 (10%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
GKT+++ + G+ +TI F V ++ I F +WD GQ++ L Y
Sbjct: 10 AAGKTTILYKLKLGEIV----TTIPTIGF-NVETVEYKNISFTVWDVGGQDKIRPLWRHY 64
Query: 62 YRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNP----NLIMFLVANKVDL 109
++ D + A+ +EL R + ++ + ANK DL
Sbjct: 65 FQNTQGLIFVVDSNDRERVNEAR---EELMRMLAEDELRDAVLLVFANKQDL 113
>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
pdb|1HUR|B Chain B, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
Length = 180
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/109 (21%), Positives = 46/109 (42%), Gaps = 6/109 (5%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
GKT+++ + G+ +TI F V ++ I F +WD GQ++ L Y
Sbjct: 26 AAGKTTILYKLKLGEIV----TTIPTIGF-NVETVEYKNISFTVWDVGGQDKIRPLWRHY 80
Query: 62 YRGXXXXXXXYDITSMDSFERAKKWVQELQRQGN-PNLIMFLVANKVDL 109
++ D + A++ + + + + ++ + ANK DL
Sbjct: 81 FQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDL 129
>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1RRG|B Chain B, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1R8Q|A Chain A, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1R8Q|B Chain B, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1RRF|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Monomeric Crystal Form
Length = 181
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/109 (21%), Positives = 46/109 (42%), Gaps = 6/109 (5%)
Query: 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 61
GKT+++ + G+ +TI F V ++ I F +WD GQ++ L Y
Sbjct: 27 AAGKTTILYKLKLGEIV----TTIPTIGF-NVETVEYKNISFTVWDVGGQDKIRPLWRHY 81
Query: 62 YRGXXXXXXXYDITSMDSFERAKKWVQELQRQGN-PNLIMFLVANKVDL 109
++ D + A++ + + + + ++ + ANK DL
Sbjct: 82 FQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDL 130
>pdb|2IWR|A Chain A, Gtpase Like Domain Of Centaurin Gamma 1 (Human)
Length = 178
Score = 28.1 bits (61), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 3/92 (3%)
Query: 73 DITSMDSFERAKKWVQELQRQGNPNLIMFLVA--NKVDLEEKRKVKNEEGE-LYAQENGL 129
D S + R + L+ +G L + LV +++ R V + L A
Sbjct: 84 DENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRC 143
Query: 130 SFLETSAKSAHNVNELFYEIAKRLAEVNPSRQ 161
S+ ET A NV+ +F E+A+++ + +Q
Sbjct: 144 SYYETXATYGLNVDRVFQEVAQKVVTLRKQQQ 175
>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8
Length = 179
Score = 28.1 bits (61), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 16/84 (19%)
Query: 4 GKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIK---FDIWDTAGQERYHSLAPM 60
GKT+++ +F+ + TIG+ ++ E+ +K F +WD GQE S
Sbjct: 28 GKTTILYQFLMNEVVH-TSPTIGS-------NVEEIVVKNTHFLMWDIGGQESLRSSWNT 79
Query: 61 YYRGXXXXXXXYDITSMDSFERAK 84
YY + I +DS +R +
Sbjct: 80 YYSN-----TEFIILVVDSIDRER 98
>pdb|1WRY|A Chain A, Solution Structure Of The Sh3 Domain-Binding Glutamic
Acid- Rich-Like Protein
Length = 121
Score = 27.7 bits (60), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 97 NLIMFLVANKVDLEEKRKVKNEEGELYAQEN 127
+++ FL ANK+ EEK NEE + +EN
Sbjct: 29 DVLGFLEANKIGFEEKDIAANEENRKWMREN 59
>pdb|1KO4|A Chain A, Crystal Structure Of Gluconate Kinase
pdb|1KO4|B Chain B, Crystal Structure Of Gluconate Kinase
Length = 175
Score = 27.7 bits (60), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 84 KKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLET 134
KK ++L R+GNPNL + D+ E R +K +G + + ++ ET
Sbjct: 91 KKHYRDLLREGNPNLSFIYLKGDFDVIESR-LKARKGHFFKTQXLVTQFET 140
>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
(Casp Target)
Length = 181
Score = 27.7 bits (60), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 54/126 (42%), Gaps = 32/126 (25%)
Query: 4 GKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTI---KFDIWDTAGQERYHSLAPM 60
GKT+++ +F + TIG+ ++ E+ I +F +WD GQE S
Sbjct: 33 GKTTILYQFSMNEVV-HTSPTIGS-------NVEEIVINNTRFLMWDIGGQESLRSSWNT 84
Query: 61 YYRGXXXXXXXYDITSMDSFERAKKWV-----------QELQRQGNPNLIMFLVANKVDL 109
YY + I +DS +R + V ++L++ G + + ANK D+
Sbjct: 85 YYTN-----TEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAG-----LLIFANKQDV 134
Query: 110 EEKRKV 115
+E V
Sbjct: 135 KECMTV 140
>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|C Chain C, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|D Chain D, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
Length = 183
Score = 27.3 bits (59), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 54/126 (42%), Gaps = 32/126 (25%)
Query: 4 GKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTI---KFDIWDTAGQERYHSLAPM 60
GKT+++ +F + TIG+ ++ E+ I +F +WD GQE S
Sbjct: 34 GKTTILYQFSMNEVV-HTSPTIGS-------NVEEIVINNTRFLMWDIGGQESLRSSWNT 85
Query: 61 YYRGXXXXXXXYDITSMDSFERAKKWV-----------QELQRQGNPNLIMFLVANKVDL 109
YY + I +DS +R + V ++L++ G + + ANK D+
Sbjct: 86 YYTN-----TEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAG-----LLIFANKQDV 135
Query: 110 EEKRKV 115
+E V
Sbjct: 136 KECMTV 141
>pdb|1KNQ|A Chain A, Crystal Structure Of Gluconate Kinase
pdb|1KNQ|B Chain B, Crystal Structure Of Gluconate Kinase
pdb|1KO1|A Chain A, Crystal Structure Of Gluconate Kinase
pdb|1KO1|B Chain B, Crystal Structure Of Gluconate Kinase
pdb|1KO5|A Chain A, Crystal Structure Of Gluconate Kinase
pdb|1KO5|B Chain B, Crystal Structure Of Gluconate Kinase
pdb|1KO8|A Chain A, Crystal Structure Of Gluconate Kinase
pdb|1KO8|B Chain B, Crystal Structure Of Gluconate Kinase
pdb|1KOF|A Chain A, Crystal Structure Of Gluconate Kinase
pdb|1KOF|B Chain B, Crystal Structure Of Gluconate Kinase
Length = 175
Score = 27.3 bits (59), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 84 KKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLET 134
KK ++L R+GNPNL + D+ E R +K +G + + ++ ET
Sbjct: 91 KKHYRDLLREGNPNLSFIYLKGDFDVIESR-LKARKGHFFKTQMLVTQFET 140
>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5
pdb|1Z6Y|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5
Length = 179
Score = 26.9 bits (58), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 54/126 (42%), Gaps = 32/126 (25%)
Query: 4 GKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTI---KFDIWDTAGQERYHSLAPM 60
GKT+++ +F + TIG+ ++ E+ I +F +WD GQE S
Sbjct: 28 GKTTILYQFSMNEVVH-TSPTIGS-------NVEEIVINNTRFLMWDIGGQESLRSSWNT 79
Query: 61 YYRGXXXXXXXYDITSMDSFERAKKWV-----------QELQRQGNPNLIMFLVANKVDL 109
YY + I +DS +R + V ++L++ G + + ANK D+
Sbjct: 80 YYTN-----TEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAG-----LLIFANKQDV 129
Query: 110 EEKRKV 115
+E V
Sbjct: 130 KECMTV 135
>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5
Length = 187
Score = 26.9 bits (58), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 54/126 (42%), Gaps = 32/126 (25%)
Query: 4 GKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTI---KFDIWDTAGQERYHSLAPM 60
GKT+++ +F + TIG+ ++ E+ I +F +WD GQE S
Sbjct: 28 GKTTILYQFSMNEVVH-TSPTIGS-------NVEEIVINNTRFLMWDIGGQESLRSSWNT 79
Query: 61 YYRGXXXXXXXYDITSMDSFERAKKWV-----------QELQRQGNPNLIMFLVANKVDL 109
YY + I +DS +R + V ++L++ G + + ANK D+
Sbjct: 80 YYTN-----TEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAG-----LLIFANKQDV 129
Query: 110 EEKRKV 115
+E V
Sbjct: 130 KECMTV 135
>pdb|3DPU|A Chain A, Roccor Domain Tandem Of Rab Family Protein (Roco)
pdb|3DPU|B Chain B, Roccor Domain Tandem Of Rab Family Protein (Roco)
Length = 535
Score = 26.9 bits (58), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 54/114 (47%), Gaps = 14/114 (12%)
Query: 4 GKTSLVLRFVKGQFFDFQES-TIGAAFFT-QVLSL----NEVTIK---FDIWDTAGQERY 54
GKTSL+ + + G+ FD +ES T G T Q ++ N+ +K F WD GQE
Sbjct: 53 GKTSLLKQLI-GETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIM 111
Query: 55 HSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVD 108
H+ + D + DS W++ +++ G + ++ +V NK+D
Sbjct: 112 HASHQFFMTRSSVYMLLLD-SRTDS--NKHYWLRHIEKYGGKSPVI-VVMNKID 161
>pdb|1U6T|A Chain A, Crystal Structure Of The Human Sh3 Binding Glutamic-Rich
Protein Like
Length = 121
Score = 26.9 bits (58), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 97 NLIMFLVANKVDLEEKRKVKNEEGELYAQEN 127
+++ FL ANK+ EEK NEE + +EN
Sbjct: 21 DVLGFLEANKIGFEEKDIAANEENRKWMREN 51
>pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|B Chain B, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|C Chain C, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
Length = 190
Score = 26.6 bits (57), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 15/81 (18%)
Query: 40 TIKFDIWDTAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWV--QELQRQGN-P 96
++ F ++D +GQ RY +L YY+ I +DS +R + V +EL N P
Sbjct: 66 SLSFTVFDMSGQGRYRNLWEHYYKEGQAI-----IFVIDSSDRLRMVVAKEELDTLLNHP 120
Query: 97 NL------IMFLVANKVDLEE 111
++ I+F ANK+DL +
Sbjct: 121 DIKHRRIPILFF-ANKMDLRD 140
>pdb|3OPB|A Chain A, Crystal Structure Of She4p
pdb|3OPB|B Chain B, Crystal Structure Of She4p
Length = 778
Score = 26.6 bits (57), Expect = 7.8, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 6/44 (13%)
Query: 72 YDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKV 115
Y+IT R+K ++ +L +QG +I+ +ANK D+ E ++
Sbjct: 482 YNIT------RSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRI 519
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 26.6 bits (57), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 27/59 (45%)
Query: 85 KWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVN 143
K + E R G + + L+AN D+ K K L A+E L +E K+ +VN
Sbjct: 16 KKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 74
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,956,781
Number of Sequences: 62578
Number of extensions: 173721
Number of successful extensions: 922
Number of sequences better than 100.0: 351
Number of HSP's better than 100.0 without gapping: 317
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 397
Number of HSP's gapped (non-prelim): 354
length of query: 181
length of database: 14,973,337
effective HSP length: 93
effective length of query: 88
effective length of database: 9,153,583
effective search space: 805515304
effective search space used: 805515304
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)