Query 030225
Match_columns 181
No_of_seqs 119 out of 1630
Neff 10.6
Searched_HMMs 46136
Date Fri Mar 29 10:28:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030225.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030225hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084 GTPase Rab1/YPT1, smal 100.0 2.1E-43 4.5E-48 234.9 19.5 161 1-161 18-179 (205)
2 KOG0092 GTPase Rab5/YPT51 and 100.0 1.5E-42 3.2E-47 230.0 18.3 180 1-181 14-200 (200)
3 KOG0078 GTP-binding protein SE 100.0 3E-40 6.5E-45 222.8 19.7 161 1-161 21-181 (207)
4 KOG0094 GTPase Rab6/YPT6/Ryh1, 100.0 3.2E-40 7E-45 219.1 18.6 158 1-158 31-189 (221)
5 cd04120 Rab12 Rab12 subfamily. 100.0 1E-38 2.2E-43 222.4 22.9 158 1-158 9-167 (202)
6 KOG0080 GTPase Rab18, small G 100.0 1.3E-38 2.7E-43 205.2 17.1 158 1-158 20-178 (209)
7 KOG0079 GTP-binding protein H- 100.0 6.5E-39 1.4E-43 203.9 15.3 156 1-157 17-172 (198)
8 KOG0098 GTPase Rab2, small G p 100.0 8.4E-39 1.8E-43 210.8 16.0 157 1-157 15-171 (216)
9 cd04121 Rab40 Rab40 subfamily. 100.0 1.2E-37 2.7E-42 215.1 21.6 157 1-158 15-171 (189)
10 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 1.7E-37 3.7E-42 217.2 22.1 179 1-180 9-201 (201)
11 cd04144 Ras2 Ras2 subfamily. 100.0 3.4E-37 7.4E-42 213.9 20.1 178 1-181 8-188 (190)
12 cd04125 RabA_like RabA-like su 100.0 2E-36 4.2E-41 209.8 22.7 178 1-181 9-186 (188)
13 cd04112 Rab26 Rab26 subfamily. 100.0 2.2E-36 4.8E-41 210.0 22.2 179 1-180 9-191 (191)
14 KOG0394 Ras-related GTPase [Ge 100.0 2.7E-37 5.9E-42 203.3 16.2 159 1-159 18-183 (210)
15 KOG0087 GTPase Rab11/YPT3, sma 100.0 3.5E-37 7.6E-42 207.2 16.9 158 1-158 23-180 (222)
16 cd04110 Rab35 Rab35 subfamily. 100.0 4.1E-36 8.9E-41 209.8 22.0 157 1-158 15-171 (199)
17 cd04122 Rab14 Rab14 subfamily. 100.0 4.4E-36 9.5E-41 204.2 20.9 155 1-155 11-165 (166)
18 PLN03110 Rab GTPase; Provision 100.0 1.3E-35 2.8E-40 209.6 23.0 156 1-156 21-176 (216)
19 cd04111 Rab39 Rab39 subfamily. 100.0 1E-35 2.2E-40 209.4 22.2 158 1-158 11-170 (211)
20 cd04126 Rab20 Rab20 subfamily. 100.0 7.2E-36 1.6E-40 210.3 20.8 175 1-180 9-220 (220)
21 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 2.3E-35 5E-40 208.8 21.8 154 1-156 22-190 (232)
22 cd04109 Rab28 Rab28 subfamily. 100.0 3.7E-35 8E-40 207.3 22.6 156 1-156 9-168 (215)
23 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 1.8E-35 3.8E-40 203.4 19.4 152 1-154 14-180 (182)
24 cd04133 Rop_like Rop subfamily 100.0 2E-35 4.4E-40 202.0 19.2 151 1-153 10-172 (176)
25 cd01867 Rab8_Rab10_Rab13_like 100.0 4.2E-35 9.2E-40 199.5 20.6 155 1-155 12-166 (167)
26 KOG0091 GTPase Rab39, small G 100.0 3E-36 6.6E-41 194.7 14.0 159 1-159 17-178 (213)
27 cd01865 Rab3 Rab3 subfamily. 100.0 5.3E-35 1.1E-39 198.7 21.0 155 1-155 10-164 (165)
28 cd04118 Rab24 Rab24 subfamily. 100.0 1.1E-34 2.4E-39 201.8 23.0 177 1-180 9-193 (193)
29 cd04117 Rab15 Rab15 subfamily. 100.0 4.8E-35 1E-39 198.1 20.2 152 1-152 9-160 (161)
30 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 5.3E-35 1.1E-39 199.8 20.1 156 1-157 11-167 (172)
31 KOG0093 GTPase Rab3, small G p 100.0 6E-36 1.3E-40 190.1 13.9 160 1-160 30-189 (193)
32 PTZ00369 Ras-like protein; Pro 100.0 4E-35 8.7E-40 203.3 19.4 157 1-158 14-171 (189)
33 cd04131 Rnd Rnd subfamily. Th 100.0 5.6E-35 1.2E-39 200.5 19.6 152 1-154 10-176 (178)
34 KOG0088 GTPase Rab21, small G 100.0 2.8E-36 6E-41 194.1 12.0 155 3-157 24-178 (218)
35 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 100.0 1.1E-34 2.5E-39 197.2 20.5 155 1-155 11-165 (166)
36 smart00176 RAN Ran (Ras-relate 100.0 1.2E-34 2.6E-39 201.6 20.7 153 1-156 4-156 (200)
37 cd01875 RhoG RhoG subfamily. 100.0 1.4E-34 3E-39 200.9 20.7 153 1-155 12-178 (191)
38 cd04128 Spg1 Spg1p. Spg1p (se 100.0 1.2E-34 2.7E-39 199.5 20.2 157 1-158 9-170 (182)
39 cd04119 RJL RJL (RabJ-Like) su 100.0 1.8E-34 4E-39 196.2 20.3 154 1-154 9-167 (168)
40 cd04127 Rab27A Rab27a subfamil 100.0 2E-34 4.4E-39 198.4 20.2 156 1-156 13-179 (180)
41 PF00071 Ras: Ras family; Int 100.0 2.9E-34 6.2E-39 194.4 20.3 154 1-154 8-161 (162)
42 cd04108 Rab36_Rab34 Rab34/Rab3 100.0 4.3E-34 9.2E-39 195.0 21.2 156 1-156 9-167 (170)
43 cd01868 Rab11_like Rab11-like. 100.0 5.1E-34 1.1E-38 193.8 20.7 153 1-153 12-164 (165)
44 cd01866 Rab2 Rab2 subfamily. 100.0 6.4E-34 1.4E-38 193.9 20.9 155 1-155 13-167 (168)
45 cd04132 Rho4_like Rho4-like su 100.0 6.4E-34 1.4E-38 197.0 20.5 158 1-160 9-173 (187)
46 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 100.0 9.6E-34 2.1E-38 199.6 21.1 156 1-158 10-180 (222)
47 cd04113 Rab4 Rab4 subfamily. 100.0 8.4E-34 1.8E-38 192.0 20.0 152 1-152 9-160 (161)
48 KOG0086 GTPase Rab4, small G p 100.0 1.4E-34 3E-39 185.2 15.1 156 1-156 18-173 (214)
49 cd01874 Cdc42 Cdc42 subfamily. 100.0 6.2E-34 1.3E-38 195.0 19.0 151 1-153 10-174 (175)
50 cd01864 Rab19 Rab19 subfamily. 100.0 1.2E-33 2.6E-38 192.0 19.9 152 1-152 12-164 (165)
51 PLN03118 Rab family protein; P 100.0 2.5E-33 5.5E-38 197.5 22.1 180 1-181 23-211 (211)
52 cd04175 Rap1 Rap1 subgroup. T 100.0 7.8E-34 1.7E-38 192.7 18.7 153 1-154 10-163 (164)
53 cd04136 Rap_like Rap-like subf 100.0 6.8E-34 1.5E-38 192.7 18.3 152 1-153 10-162 (163)
54 KOG0083 GTPase Rab26/Rab37, sm 100.0 9.7E-36 2.1E-40 186.5 8.3 180 1-180 6-190 (192)
55 smart00175 RAB Rab subfamily o 100.0 2.7E-33 5.9E-38 189.8 20.9 155 1-155 9-163 (164)
56 KOG0095 GTPase Rab30, small G 100.0 1.7E-34 3.7E-39 184.2 13.8 156 1-156 16-171 (213)
57 cd00877 Ran Ran (Ras-related n 100.0 2.7E-33 5.8E-38 190.4 20.5 153 1-156 9-161 (166)
58 cd04106 Rab23_lke Rab23-like s 100.0 2.1E-33 4.5E-38 190.1 19.9 151 1-152 9-161 (162)
59 cd04134 Rho3 Rho3 subfamily. 100.0 1.9E-33 4E-38 195.0 20.0 156 1-158 9-178 (189)
60 PLN03071 GTP-binding nuclear p 100.0 1.4E-33 2.9E-38 199.5 19.6 153 1-156 22-174 (219)
61 PLN03108 Rab family protein; P 100.0 5.2E-33 1.1E-37 195.5 21.6 157 1-157 15-171 (210)
62 cd01861 Rab6 Rab6 subfamily. 100.0 4.6E-33 9.9E-38 188.3 19.9 152 1-152 9-160 (161)
63 cd04176 Rap2 Rap2 subgroup. T 100.0 3.4E-33 7.3E-38 189.4 18.5 152 1-153 10-162 (163)
64 KOG0081 GTPase Rab27, small G 100.0 1.5E-34 3.3E-39 186.2 10.4 157 1-157 18-184 (219)
65 cd01860 Rab5_related Rab5-rela 100.0 1.4E-32 2.9E-37 186.3 20.6 153 1-153 10-162 (163)
66 cd01871 Rac1_like Rac1-like su 100.0 6E-33 1.3E-37 190.0 18.8 150 1-152 10-173 (174)
67 cd04124 RabL2 RabL2 subfamily. 100.0 1.8E-32 4E-37 185.5 20.4 152 1-156 9-160 (161)
68 cd04116 Rab9 Rab9 subfamily. 100.0 1.5E-32 3.2E-37 187.5 20.0 151 1-152 14-169 (170)
69 cd04115 Rab33B_Rab33A Rab33B/R 100.0 2E-32 4.3E-37 186.9 20.1 153 1-153 11-168 (170)
70 cd04140 ARHI_like ARHI subfami 100.0 1.2E-32 2.7E-37 187.0 18.6 150 1-151 10-162 (165)
71 smart00173 RAS Ras subfamily o 100.0 1.3E-32 2.9E-37 186.6 18.7 153 1-154 9-162 (164)
72 smart00174 RHO Rho (Ras homolo 100.0 1.8E-32 3.8E-37 187.7 19.2 153 1-155 7-173 (174)
73 KOG0097 GTPase Rab14, small G 100.0 1.2E-32 2.7E-37 174.4 16.5 155 2-156 21-175 (215)
74 cd04142 RRP22 RRP22 subfamily. 100.0 1.7E-32 3.6E-37 191.1 18.8 160 1-160 9-180 (198)
75 cd04101 RabL4 RabL4 (Rab-like4 100.0 4.4E-32 9.6E-37 184.0 20.2 152 1-153 9-163 (164)
76 cd04138 H_N_K_Ras_like H-Ras/N 100.0 3.4E-32 7.3E-37 184.0 19.0 151 1-153 10-161 (162)
77 cd04145 M_R_Ras_like M-Ras/R-R 100.0 5.1E-32 1.1E-36 183.7 19.2 152 1-153 11-163 (164)
78 cd04123 Rab21 Rab21 subfamily. 100.0 1.3E-31 2.8E-36 181.1 20.7 153 1-153 9-161 (162)
79 cd01862 Rab7 Rab7 subfamily. 100.0 1.6E-31 3.6E-36 182.5 21.1 157 1-157 9-170 (172)
80 cd01873 RhoBTB RhoBTB subfamil 100.0 7.2E-32 1.6E-36 187.3 18.3 149 1-152 11-194 (195)
81 cd04143 Rhes_like Rhes_like su 100.0 9.7E-32 2.1E-36 192.7 19.3 152 1-153 9-170 (247)
82 cd01863 Rab18 Rab18 subfamily. 100.0 2.7E-31 5.9E-36 179.6 19.9 151 1-152 9-160 (161)
83 cd01892 Miro2 Miro2 subfamily. 100.0 6.4E-32 1.4E-36 184.1 16.8 153 1-155 13-167 (169)
84 cd00154 Rab Rab family. Rab G 100.0 3.2E-31 7E-36 178.3 19.3 150 1-150 9-158 (159)
85 cd04146 RERG_RasL11_like RERG/ 100.0 1.6E-31 3.5E-36 181.5 17.4 153 1-154 8-164 (165)
86 cd04177 RSR1 RSR1 subgroup. R 100.0 4E-31 8.6E-36 180.1 19.3 153 1-154 10-164 (168)
87 cd04130 Wrch_1 Wrch-1 subfamil 100.0 4.8E-31 1E-35 180.5 19.2 149 1-151 9-171 (173)
88 cd04114 Rab30 Rab30 subfamily. 100.0 1.1E-30 2.4E-35 178.0 20.8 153 1-153 16-168 (169)
89 cd04103 Centaurin_gamma Centau 100.0 5.8E-31 1.3E-35 177.4 17.6 145 1-152 9-157 (158)
90 cd04148 RGK RGK subfamily. Th 100.0 1E-30 2.2E-35 185.1 19.4 154 1-156 9-165 (221)
91 cd04135 Tc10 TC10 subfamily. 100.0 1.9E-30 4E-35 177.7 19.3 151 1-153 9-173 (174)
92 PTZ00099 rab6; Provisional 100.0 6.8E-30 1.5E-34 174.7 20.7 144 15-158 3-146 (176)
93 cd04139 RalA_RalB RalA/RalB su 100.0 6.8E-30 1.5E-34 173.1 19.6 154 1-155 9-163 (164)
94 cd04162 Arl9_Arfrp2_like Arl9/ 100.0 1.5E-31 3.3E-36 181.4 11.0 146 1-151 8-163 (164)
95 cd00876 Ras Ras family. The R 100.0 6.1E-30 1.3E-34 172.6 18.2 151 1-152 8-159 (160)
96 cd04129 Rho2 Rho2 subfamily. 100.0 1.6E-29 3.4E-34 175.0 20.2 156 1-158 10-177 (187)
97 KOG0395 Ras-related GTPase [Ge 100.0 5.4E-30 1.2E-34 177.1 17.2 155 1-156 12-167 (196)
98 cd04137 RheB Rheb (Ras Homolog 100.0 2E-29 4.4E-34 173.5 19.7 157 1-158 10-167 (180)
99 cd04149 Arf6 Arf6 subfamily. 100.0 2.5E-30 5.5E-35 176.1 14.9 144 1-151 18-167 (168)
100 cd04158 ARD1 ARD1 subfamily. 100.0 3.7E-30 8E-35 175.5 15.6 151 1-158 8-165 (169)
101 cd01870 RhoA_like RhoA-like su 100.0 2.2E-29 4.8E-34 172.5 19.3 151 1-153 10-174 (175)
102 cd04147 Ras_dva Ras-dva subfam 100.0 1.3E-29 2.9E-34 176.9 18.5 157 1-158 8-167 (198)
103 PLN00223 ADP-ribosylation fact 100.0 5.6E-30 1.2E-34 176.2 15.5 149 1-156 26-180 (181)
104 smart00177 ARF ARF-like small 100.0 2.5E-30 5.4E-35 177.2 12.9 146 1-153 22-173 (175)
105 cd04152 Arl4_Arl7 Arl4/Arl7 su 100.0 6.5E-30 1.4E-34 176.4 15.1 156 1-159 12-175 (183)
106 cd04150 Arf1_5_like Arf1-Arf5- 100.0 2.3E-30 5.1E-35 174.8 12.1 144 1-151 9-158 (159)
107 PTZ00133 ADP-ribosylation fact 100.0 7.3E-30 1.6E-34 175.9 13.2 150 1-157 26-181 (182)
108 KOG0393 Ras-related small GTPa 100.0 1.2E-29 2.7E-34 172.0 12.3 156 1-158 13-183 (198)
109 cd00157 Rho Rho (Ras homology) 100.0 2.5E-28 5.4E-33 166.6 18.9 149 1-151 9-170 (171)
110 PTZ00132 GTP-binding nuclear p 100.0 6.5E-28 1.4E-32 170.4 20.4 154 1-157 18-171 (215)
111 cd04154 Arl2 Arl2 subfamily. 100.0 8.9E-29 1.9E-33 169.3 15.1 144 1-151 23-172 (173)
112 cd04161 Arl2l1_Arl13_like Arl2 100.0 4.1E-29 8.8E-34 170.0 13.3 146 1-151 8-166 (167)
113 cd04157 Arl6 Arl6 subfamily. 100.0 6.2E-29 1.3E-33 168.1 12.8 145 1-151 8-161 (162)
114 cd04102 RabL3 RabL3 (Rab-like3 100.0 4.7E-28 1E-32 168.5 17.3 140 1-140 9-176 (202)
115 cd01893 Miro1 Miro1 subfamily. 100.0 1E-27 2.3E-32 163.0 17.3 152 1-155 9-165 (166)
116 cd04153 Arl5_Arl8 Arl5/Arl8 su 100.0 6E-28 1.3E-32 165.3 15.3 144 1-151 24-173 (174)
117 cd04156 ARLTS1 ARLTS1 subfamil 100.0 4.5E-28 9.7E-33 163.7 13.4 145 1-151 8-159 (160)
118 PF00025 Arf: ADP-ribosylation 100.0 1.8E-27 3.8E-32 163.0 15.3 146 1-153 23-175 (175)
119 KOG0073 GTP-binding ADP-ribosy 100.0 3.1E-27 6.6E-32 153.1 15.3 151 1-156 25-180 (185)
120 cd04160 Arfrp1 Arfrp1 subfamil 100.0 2.5E-27 5.4E-32 161.1 15.0 145 1-151 8-166 (167)
121 KOG4252 GTP-binding protein [S 100.0 7.3E-30 1.6E-34 167.7 2.4 157 1-158 29-185 (246)
122 cd04151 Arl1 Arl1 subfamily. 100.0 5.8E-28 1.3E-32 162.9 11.4 144 1-151 8-157 (158)
123 KOG0070 GTP-binding ADP-ribosy 100.0 5.8E-28 1.3E-32 160.1 10.7 150 2-156 27-180 (181)
124 cd00878 Arf_Arl Arf (ADP-ribos 100.0 2.3E-27 5.1E-32 159.9 13.4 144 1-151 8-157 (158)
125 cd00879 Sar1 Sar1 subfamily. 100.0 5.8E-27 1.3E-31 162.6 15.2 145 1-152 28-189 (190)
126 smart00178 SAR Sar1p-like memb 99.9 1.6E-26 3.5E-31 159.6 15.2 145 1-152 26-183 (184)
127 PLN00023 GTP-binding protein; 99.9 3.8E-26 8.2E-31 166.5 16.3 129 1-129 30-189 (334)
128 cd04159 Arl10_like Arl10-like 99.9 9.6E-27 2.1E-31 156.5 12.0 145 1-151 8-158 (159)
129 cd01890 LepA LepA subfamily. 99.9 1.4E-25 3.1E-30 154.1 15.3 147 1-153 9-176 (179)
130 PRK12299 obgE GTPase CgtA; Rev 99.9 4E-25 8.6E-30 164.3 16.3 156 1-157 167-331 (335)
131 KOG0075 GTP-binding ADP-ribosy 99.9 1E-26 2.2E-31 148.1 5.6 148 2-153 30-181 (186)
132 cd01898 Obg Obg subfamily. Th 99.9 3.9E-25 8.5E-30 150.7 13.5 150 1-152 9-169 (170)
133 cd00882 Ras_like_GTPase Ras-li 99.9 3.9E-24 8.5E-29 142.3 17.5 149 1-150 5-156 (157)
134 cd01897 NOG NOG1 is a nucleola 99.9 7E-25 1.5E-29 149.2 13.9 148 1-153 9-167 (168)
135 cd04171 SelB SelB subfamily. 99.9 1.7E-24 3.8E-29 146.5 15.0 144 1-151 9-163 (164)
136 cd04155 Arl3 Arl3 subfamily. 99.9 3E-24 6.4E-29 146.8 15.7 141 1-151 23-172 (173)
137 cd01879 FeoB Ferrous iron tran 99.9 3.6E-24 7.7E-29 144.2 15.6 144 1-153 5-156 (158)
138 TIGR00231 small_GTP small GTP- 99.9 6.4E-24 1.4E-28 142.4 16.2 149 1-150 10-160 (161)
139 COG1100 GTPase SAR1 and relate 99.9 2E-23 4.4E-28 147.9 18.3 158 1-158 14-189 (219)
140 cd01878 HflX HflX subfamily. 99.9 3.8E-24 8.3E-29 150.0 13.7 145 1-152 50-203 (204)
141 KOG0071 GTP-binding ADP-ribosy 99.9 9.2E-25 2E-29 138.2 9.1 146 2-154 27-178 (180)
142 TIGR02528 EutP ethanolamine ut 99.9 1.3E-24 2.8E-29 144.0 10.4 127 1-150 9-141 (142)
143 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 9.8E-24 2.1E-28 143.5 14.3 150 1-154 9-166 (168)
144 cd01891 TypA_BipA TypA (tyrosi 99.9 7.3E-24 1.6E-28 147.5 12.0 152 1-156 11-190 (194)
145 TIGR02729 Obg_CgtA Obg family 99.9 4.3E-23 9.2E-28 153.4 15.6 151 1-153 166-328 (329)
146 cd01881 Obg_like The Obg-like 99.9 1.1E-23 2.3E-28 144.2 11.5 151 1-152 5-175 (176)
147 TIGR00436 era GTP-binding prot 99.9 2.1E-23 4.6E-28 152.0 12.7 151 1-158 9-168 (270)
148 TIGR03156 GTP_HflX GTP-binding 99.9 9.9E-23 2.1E-27 152.6 15.3 144 1-152 198-350 (351)
149 PRK04213 GTP-binding protein; 99.9 1.3E-23 2.8E-28 147.0 9.6 143 1-156 18-194 (201)
150 PRK15494 era GTPase Era; Provi 99.9 8.2E-23 1.8E-27 152.8 13.3 152 1-163 61-225 (339)
151 cd01894 EngA1 EngA1 subfamily. 99.9 1.2E-22 2.6E-27 136.5 11.8 140 1-152 6-156 (157)
152 PRK12297 obgE GTPase CgtA; Rev 99.9 1.2E-21 2.7E-26 149.2 17.5 153 1-158 167-331 (424)
153 KOG0072 GTP-binding ADP-ribosy 99.9 1.3E-23 2.9E-28 133.5 5.5 150 2-156 28-181 (182)
154 TIGR01393 lepA GTP-binding pro 99.9 6E-22 1.3E-26 157.2 15.4 148 1-154 12-180 (595)
155 PF02421 FeoB_N: Ferrous iron 99.9 2.8E-22 6.1E-27 132.9 11.2 140 1-149 9-156 (156)
156 cd00881 GTP_translation_factor 99.9 5.6E-22 1.2E-26 137.2 13.1 149 1-153 8-186 (189)
157 TIGR00437 feoB ferrous iron tr 99.9 8E-22 1.7E-26 156.5 15.5 144 1-153 3-154 (591)
158 KOG0076 GTP-binding ADP-ribosy 99.9 1.2E-22 2.6E-27 133.1 8.7 151 2-156 27-189 (197)
159 KOG3883 Ras family small GTPas 99.9 3.2E-21 6.9E-26 124.0 14.9 157 2-158 19-179 (198)
160 KOG1673 Ras GTPases [General f 99.9 5.7E-22 1.2E-26 127.7 11.1 158 1-159 29-191 (205)
161 PF08477 Miro: Miro-like prote 99.9 5.5E-22 1.2E-26 127.6 11.1 107 1-108 8-119 (119)
162 TIGR00450 mnmE_trmE_thdF tRNA 99.9 1.3E-21 2.8E-26 150.6 14.5 142 1-157 212-363 (442)
163 PRK03003 GTP-binding protein D 99.9 6.8E-22 1.5E-26 154.0 13.2 145 1-155 47-200 (472)
164 PRK11058 GTPase HflX; Provisio 99.9 1.6E-21 3.4E-26 149.3 14.7 150 1-156 206-364 (426)
165 PRK15467 ethanolamine utilizat 99.9 7.7E-22 1.7E-26 132.9 11.6 133 1-156 10-149 (158)
166 cd01889 SelB_euk SelB subfamil 99.9 1.1E-21 2.4E-26 136.4 12.5 150 1-154 9-186 (192)
167 PRK12296 obgE GTPase CgtA; Rev 99.9 3.5E-21 7.5E-26 148.5 16.4 155 1-158 168-344 (500)
168 cd04164 trmE TrmE (MnmE, ThdF, 99.9 1.4E-21 3E-26 131.2 12.4 138 1-153 10-156 (157)
169 TIGR00487 IF-2 translation ini 99.9 5.8E-21 1.3E-25 151.0 17.0 144 1-152 96-248 (587)
170 PRK03003 GTP-binding protein D 99.9 2.3E-21 5E-26 151.1 14.5 152 1-158 220-386 (472)
171 PRK05291 trmE tRNA modificatio 99.9 8.9E-22 1.9E-26 152.1 11.9 139 1-155 224-371 (449)
172 PRK00089 era GTPase Era; Revie 99.9 2.1E-21 4.5E-26 143.2 13.0 152 1-158 14-175 (292)
173 PRK12298 obgE GTPase CgtA; Rev 99.9 9.2E-21 2E-25 143.6 16.3 156 1-158 168-337 (390)
174 KOG0074 GTP-binding ADP-ribosy 99.9 6E-22 1.3E-26 125.7 8.2 147 2-152 27-177 (185)
175 TIGR00475 selB selenocysteine- 99.9 6.2E-21 1.3E-25 151.3 15.9 149 1-158 9-170 (581)
176 TIGR03594 GTPase_EngA ribosome 99.9 6.6E-21 1.4E-25 147.4 14.7 148 1-156 181-346 (429)
177 cd01888 eIF2_gamma eIF2-gamma 99.9 6.2E-21 1.3E-25 133.6 11.9 113 41-155 83-200 (203)
178 PRK00454 engB GTP-binding prot 99.9 1.9E-20 4.2E-25 130.4 13.5 148 1-155 33-195 (196)
179 cd00880 Era_like Era (E. coli 99.9 1.9E-20 4.1E-25 125.6 12.4 147 1-152 5-162 (163)
180 CHL00189 infB translation init 99.9 2.9E-20 6.3E-25 149.3 15.1 146 1-153 253-409 (742)
181 cd04105 SR_beta Signal recogni 99.8 8.8E-20 1.9E-24 127.6 15.2 110 1-111 9-123 (203)
182 PRK05306 infB translation init 99.8 4.7E-20 1E-24 149.3 15.5 143 1-152 299-450 (787)
183 cd04163 Era Era subfamily. Er 99.8 3.6E-20 7.9E-25 125.3 12.7 147 1-152 12-167 (168)
184 COG1159 Era GTPase [General fu 99.8 2.2E-20 4.8E-25 133.2 10.9 154 1-159 15-177 (298)
185 TIGR03598 GTPase_YsxC ribosome 99.8 4.5E-20 9.8E-25 126.9 12.1 136 1-143 27-179 (179)
186 cd01895 EngA2 EngA2 subfamily. 99.8 8.7E-20 1.9E-24 124.3 13.4 146 1-152 11-173 (174)
187 PRK05433 GTP-binding protein L 99.8 9.7E-20 2.1E-24 144.9 14.7 149 1-155 16-185 (600)
188 TIGR03594 GTPase_EngA ribosome 99.8 7.1E-20 1.5E-24 141.7 13.5 144 1-155 8-161 (429)
189 KOG4423 GTP-binding protein-li 99.8 4.7E-22 1E-26 131.7 1.1 156 2-157 35-197 (229)
190 PRK00093 GTP-binding protein D 99.8 2E-19 4.3E-24 139.4 14.9 138 1-151 10-159 (435)
191 PRK09554 feoB ferrous iron tra 99.8 3.2E-19 6.9E-24 145.0 16.5 145 1-154 12-168 (772)
192 KOG0096 GTPase Ran/TC4/GSP1 (n 99.8 1.6E-20 3.5E-25 124.8 7.4 154 2-158 20-173 (216)
193 TIGR00491 aIF-2 translation in 99.8 2.4E-19 5.1E-24 141.8 15.0 147 1-154 13-216 (590)
194 PF00009 GTP_EFTU: Elongation 99.8 7E-20 1.5E-24 126.9 9.8 150 1-154 12-187 (188)
195 PRK00093 GTP-binding protein D 99.8 2.8E-19 6.1E-24 138.6 13.6 149 1-156 182-346 (435)
196 PRK09518 bifunctional cytidyla 99.8 2.4E-19 5.1E-24 145.8 13.5 144 1-155 284-437 (712)
197 PRK09518 bifunctional cytidyla 99.8 1.8E-18 3.8E-23 140.8 16.7 150 1-158 459-625 (712)
198 TIGR00483 EF-1_alpha translati 99.8 3.7E-19 8E-24 137.4 11.5 144 1-146 16-199 (426)
199 cd01876 YihA_EngB The YihA (En 99.8 1.5E-18 3.2E-23 117.7 13.2 143 1-152 8-169 (170)
200 PRK12317 elongation factor 1-a 99.8 4.1E-19 8.8E-24 137.1 11.2 144 1-146 15-197 (425)
201 PRK10512 selenocysteinyl-tRNA- 99.8 2.7E-18 5.8E-23 136.9 15.9 151 1-155 9-167 (614)
202 cd04166 CysN_ATPS CysN_ATPS su 99.8 8.1E-19 1.7E-23 123.3 10.9 142 1-145 8-185 (208)
203 TIGR01394 TypA_BipA GTP-bindin 99.8 1.2E-18 2.6E-23 138.3 12.7 151 1-155 10-192 (594)
204 PRK04004 translation initiatio 99.8 6E-18 1.3E-22 134.3 15.6 146 1-153 15-217 (586)
205 PRK10218 GTP-binding protein; 99.8 5E-18 1.1E-22 134.8 15.1 150 1-154 14-195 (607)
206 cd04168 TetM_like Tet(M)-like 99.8 4.7E-18 1E-22 121.4 12.9 106 1-110 8-129 (237)
207 COG1160 Predicted GTPases [Gen 99.8 1.2E-18 2.6E-23 130.9 10.0 144 1-154 12-165 (444)
208 TIGR03680 eif2g_arch translati 99.8 3.5E-18 7.5E-23 131.0 12.1 113 40-154 79-196 (406)
209 cd01896 DRG The developmentall 99.8 4.4E-17 9.6E-22 116.2 16.2 144 1-153 9-225 (233)
210 cd01883 EF1_alpha Eukaryotic e 99.8 2.4E-18 5.2E-23 121.8 9.7 141 1-143 8-194 (219)
211 COG2229 Predicted GTPase [Gene 99.8 2.5E-17 5.5E-22 109.5 13.6 143 2-152 20-176 (187)
212 COG0486 ThdF Predicted GTPase 99.8 1.1E-17 2.3E-22 126.1 12.0 145 1-156 226-378 (454)
213 KOG1423 Ras-like GTPase ERA [C 99.8 1.4E-17 3E-22 119.0 11.6 165 1-169 81-286 (379)
214 PRK04000 translation initiatio 99.8 1.6E-17 3.5E-22 127.3 12.4 112 41-154 85-201 (411)
215 COG1160 Predicted GTPases [Gen 99.7 4.6E-17 1E-21 122.4 13.4 153 1-158 187-355 (444)
216 cd01884 EF_Tu EF-Tu subfamily. 99.7 9.3E-17 2E-21 111.5 13.4 138 1-142 11-171 (195)
217 cd04167 Snu114p Snu114p subfam 99.7 4.4E-17 9.5E-22 115.0 11.3 106 1-110 9-136 (213)
218 KOG1489 Predicted GTP-binding 99.7 6.6E-17 1.4E-21 116.0 11.4 142 1-152 205-365 (366)
219 COG2262 HflX GTPases [General 99.7 2.9E-16 6.2E-21 116.6 14.8 150 1-157 201-359 (411)
220 COG0218 Predicted GTPase [Gene 99.7 2E-16 4.4E-21 107.4 12.6 147 1-155 33-198 (200)
221 KOG0077 Vesicle coat complex C 99.7 1.9E-17 4.1E-22 108.1 7.1 144 2-152 30-191 (193)
222 COG0370 FeoB Fe2+ transport sy 99.7 2.4E-16 5.2E-21 123.6 14.3 149 1-158 12-168 (653)
223 PRK12736 elongation factor Tu; 99.7 4.5E-16 9.8E-21 119.0 13.8 150 1-154 21-201 (394)
224 COG0532 InfB Translation initi 99.7 1.6E-15 3.5E-20 115.9 16.1 147 3-156 16-172 (509)
225 cd04169 RF3 RF3 subfamily. Pe 99.7 7.6E-16 1.7E-20 111.8 13.7 107 1-111 11-137 (267)
226 TIGR00485 EF-Tu translation el 99.7 5.5E-16 1.2E-20 118.6 13.3 134 1-140 21-179 (394)
227 PRK12735 elongation factor Tu; 99.7 7.2E-16 1.6E-20 117.9 13.5 149 1-153 21-202 (396)
228 PRK00741 prfC peptide chain re 99.7 7.7E-16 1.7E-20 121.0 13.9 106 1-110 19-144 (526)
229 PF10662 PduV-EutP: Ethanolami 99.7 7.9E-16 1.7E-20 100.1 10.3 128 1-150 10-142 (143)
230 cd04165 GTPBP1_like GTPBP1-lik 99.7 2.8E-15 6E-20 106.2 13.8 108 40-151 83-220 (224)
231 KOG0462 Elongation factor-type 99.7 1E-15 2.2E-20 117.0 11.9 149 3-155 71-236 (650)
232 COG1084 Predicted GTPase [Gene 99.7 1.6E-15 3.5E-20 109.6 12.0 151 1-157 177-339 (346)
233 CHL00071 tufA elongation facto 99.7 2E-15 4.3E-20 116.0 13.2 137 1-141 21-180 (409)
234 cd04170 EF-G_bact Elongation f 99.7 2.8E-16 6E-21 114.6 7.8 145 1-151 8-170 (268)
235 PRK14845 translation initiatio 99.7 5.8E-15 1.3E-19 122.6 16.0 145 3-154 472-673 (1049)
236 cd01886 EF-G Elongation factor 99.7 8.9E-16 1.9E-20 111.6 9.9 107 1-111 8-130 (270)
237 PF04670 Gtr1_RagA: Gtr1/RagA 99.7 1.2E-15 2.5E-20 107.8 10.0 156 1-159 8-181 (232)
238 COG0536 Obg Predicted GTPase [ 99.7 3.3E-15 7.1E-20 108.6 12.3 156 1-157 168-336 (369)
239 COG0481 LepA Membrane GTPase L 99.6 3E-15 6.6E-20 112.8 12.1 147 3-155 20-187 (603)
240 PRK05124 cysN sulfate adenylyl 99.6 2.9E-15 6.3E-20 116.7 12.1 142 1-145 36-216 (474)
241 TIGR00503 prfC peptide chain r 99.6 5.6E-15 1.2E-19 116.2 13.8 105 1-109 20-144 (527)
242 cd01850 CDC_Septin CDC/Septin. 99.6 7.4E-15 1.6E-19 107.1 13.2 133 1-138 13-186 (276)
243 PLN00043 elongation factor 1-a 99.6 4.2E-15 9E-20 115.0 12.4 115 26-144 70-203 (447)
244 PRK13351 elongation factor G; 99.6 4.7E-15 1E-19 120.8 13.0 106 1-110 17-138 (687)
245 cd01899 Ygr210 Ygr210 subfamil 99.6 7.8E-15 1.7E-19 108.6 12.5 75 1-75 7-110 (318)
246 KOG1145 Mitochondrial translat 99.6 1.9E-14 4.1E-19 110.2 14.4 146 3-156 164-318 (683)
247 cd01885 EF2 EF2 (for archaea a 99.6 4.8E-15 1E-19 104.7 10.4 69 38-110 70-138 (222)
248 TIGR02034 CysN sulfate adenyly 99.6 6.2E-15 1.3E-19 113.1 11.9 111 31-144 70-187 (406)
249 PLN03126 Elongation factor Tu; 99.6 1.6E-14 3.6E-19 112.3 13.9 137 1-141 90-249 (478)
250 cd04104 p47_IIGP_like p47 (47- 99.6 2.4E-14 5.2E-19 99.8 12.9 148 1-156 10-186 (197)
251 PTZ00327 eukaryotic translatio 99.6 9.1E-15 2E-19 113.0 11.6 112 41-154 117-233 (460)
252 PRK00049 elongation factor Tu; 99.6 3.2E-14 7E-19 108.9 14.5 148 1-152 21-201 (396)
253 KOG1707 Predicted Ras related/ 99.6 2E-15 4.3E-20 116.0 7.4 153 1-155 18-176 (625)
254 PRK05506 bifunctional sulfate 99.6 1.3E-14 2.7E-19 117.1 11.8 141 1-144 33-211 (632)
255 PRK12740 elongation factor G; 99.6 2.5E-14 5.4E-19 116.3 13.4 106 1-110 4-125 (668)
256 PTZ00141 elongation factor 1- 99.6 5.2E-14 1.1E-18 109.0 12.7 116 26-144 70-203 (446)
257 KOG1191 Mitochondrial GTPase [ 99.6 1.2E-14 2.5E-19 110.0 8.7 157 1-159 277-455 (531)
258 PLN03127 Elongation factor Tu; 99.6 9E-14 2E-18 107.6 13.2 147 1-153 70-251 (447)
259 TIGR00157 ribosome small subun 99.6 2.4E-14 5.2E-19 102.8 9.3 96 52-151 24-120 (245)
260 PRK12739 elongation factor G; 99.5 1.1E-13 2.3E-18 112.7 13.0 106 1-110 17-138 (691)
261 cd01852 AIG1 AIG1 (avrRpt2-ind 99.5 3.6E-13 7.9E-18 93.9 12.6 153 1-157 9-187 (196)
262 TIGR00484 EF-G translation elo 99.5 1.5E-13 3.2E-18 111.9 11.8 107 1-111 19-141 (689)
263 PF09439 SRPRB: Signal recogni 99.5 1.2E-14 2.6E-19 98.7 4.3 108 1-112 12-127 (181)
264 COG1163 DRG Predicted GTPase [ 99.5 8.3E-13 1.8E-17 95.6 13.8 146 1-155 72-290 (365)
265 PF01926 MMR_HSR1: 50S ribosom 99.5 1.3E-12 2.9E-17 83.4 11.7 99 1-106 8-116 (116)
266 PRK00007 elongation factor G; 99.5 9.3E-13 2E-17 107.3 13.4 106 1-110 19-140 (693)
267 PRK09602 translation-associate 99.5 9.1E-13 2E-17 100.5 12.3 57 97-157 217-274 (396)
268 COG1217 TypA Predicted membran 99.5 3.2E-13 6.9E-18 101.8 8.9 149 3-155 16-196 (603)
269 COG5256 TEF1 Translation elong 99.5 6.7E-13 1.5E-17 98.9 9.8 118 26-145 70-202 (428)
270 KOG3905 Dynein light intermedi 99.4 2.5E-12 5.5E-17 93.2 11.9 152 2-156 62-292 (473)
271 KOG0090 Signal recognition par 99.4 2.6E-12 5.6E-17 87.8 11.1 146 1-152 47-237 (238)
272 COG3596 Predicted GTPase [Gene 99.4 7.2E-13 1.6E-17 94.0 7.8 152 1-156 48-224 (296)
273 PF05783 DLIC: Dynein light in 99.4 8E-12 1.7E-16 96.7 13.3 155 1-158 34-268 (472)
274 cd00066 G-alpha G protein alph 99.4 8.8E-12 1.9E-16 92.8 12.9 122 36-157 156-314 (317)
275 COG4917 EutP Ethanolamine util 99.4 1.4E-12 2.9E-17 81.7 6.8 129 1-151 10-143 (148)
276 KOG1707 Predicted Ras related/ 99.4 8.9E-12 1.9E-16 96.3 12.5 152 1-157 434-586 (625)
277 KOG1490 GTP-binding protein CR 99.4 2.3E-12 5E-17 98.0 8.6 154 1-157 177-344 (620)
278 smart00275 G_alpha G protein a 99.4 2.2E-11 4.8E-16 91.4 13.8 119 39-157 182-337 (342)
279 COG4108 PrfC Peptide chain rel 99.4 6E-12 1.3E-16 94.4 10.6 102 1-109 21-145 (528)
280 TIGR00490 aEF-2 translation el 99.4 2.3E-12 5E-17 105.4 7.8 106 1-110 28-151 (720)
281 smart00010 small_GTPase Small 99.3 1.2E-11 2.7E-16 79.6 9.5 106 1-143 9-115 (124)
282 TIGR00101 ureG urease accessor 99.3 1.8E-11 3.9E-16 85.3 10.6 102 41-153 92-195 (199)
283 COG2895 CysN GTPases - Sulfate 99.3 1.7E-11 3.8E-16 89.7 10.7 115 26-143 71-192 (431)
284 TIGR00073 hypB hydrogenase acc 99.3 3.3E-11 7.2E-16 84.7 8.7 101 41-152 103-205 (207)
285 KOG1144 Translation initiation 99.3 6E-11 1.3E-15 94.1 10.8 152 2-158 485-691 (1064)
286 PTZ00258 GTP-binding protein; 99.3 1.2E-10 2.5E-15 88.3 11.5 75 1-75 30-126 (390)
287 PF03029 ATP_bind_1: Conserved 99.2 4.4E-12 9.5E-17 90.6 2.8 112 42-153 92-236 (238)
288 COG3276 SelB Selenocysteine-sp 99.2 1.6E-10 3.6E-15 87.0 11.1 145 4-154 12-162 (447)
289 COG0378 HypB Ni2+-binding GTPa 99.2 3.2E-10 6.9E-15 76.9 11.4 78 66-153 119-200 (202)
290 PRK07560 elongation factor EF- 99.2 3.1E-10 6.8E-15 93.2 12.4 106 1-110 29-152 (731)
291 cd01882 BMS1 Bms1. Bms1 is an 99.2 2.8E-10 6.1E-15 80.9 10.4 128 1-140 48-182 (225)
292 cd01855 YqeH YqeH. YqeH is an 99.2 1.8E-10 3.9E-15 79.9 9.2 94 54-154 24-125 (190)
293 PRK09435 membrane ATPase/prote 99.2 3E-10 6.5E-15 84.6 10.8 108 40-158 148-264 (332)
294 PRK09866 hypothetical protein; 99.2 5.6E-10 1.2E-14 88.4 12.4 109 41-151 230-350 (741)
295 TIGR00991 3a0901s02IAP34 GTP-b 99.2 3.4E-10 7.5E-15 82.9 10.5 107 1-110 47-166 (313)
296 PLN00116 translation elongatio 99.2 1E-10 2.2E-15 97.2 8.8 68 39-110 96-163 (843)
297 KOG0461 Selenocysteine-specifi 99.2 8.1E-10 1.8E-14 81.0 12.1 153 2-158 17-197 (522)
298 KOG0458 Elongation factor 1 al 99.2 2.2E-10 4.7E-15 88.8 9.6 117 26-145 240-373 (603)
299 PTZ00416 elongation factor 2; 99.2 1.5E-10 3.2E-15 96.1 8.8 67 40-110 91-157 (836)
300 cd01859 MJ1464 MJ1464. This f 99.2 1.5E-10 3.3E-15 77.7 7.3 95 55-155 3-97 (156)
301 cd01853 Toc34_like Toc34-like 99.1 4.8E-10 1E-14 80.7 9.4 107 1-110 40-162 (249)
302 PRK12289 GTPase RsgA; Reviewed 99.1 3.9E-10 8.4E-15 84.8 9.2 92 56-152 81-173 (352)
303 COG0480 FusA Translation elong 99.1 3.7E-10 7.9E-15 91.2 8.7 106 2-111 20-142 (697)
304 PRK09601 GTP-binding protein Y 99.1 2.6E-09 5.6E-14 80.3 12.6 75 1-75 11-107 (364)
305 cd01854 YjeQ_engC YjeQ/EngC. 99.1 5E-10 1.1E-14 82.4 8.4 88 59-151 73-161 (287)
306 TIGR00750 lao LAO/AO transport 99.1 5.7E-10 1.2E-14 82.7 8.5 104 40-154 126-238 (300)
307 cd01900 YchF YchF subfamily. 99.1 2.4E-09 5.1E-14 77.9 11.5 75 1-75 7-103 (274)
308 PRK00098 GTPase RsgA; Reviewed 99.1 5.8E-10 1.3E-14 82.5 8.1 86 61-150 77-163 (298)
309 KOG0082 G-protein alpha subuni 99.1 4.8E-09 1E-13 78.0 12.7 130 23-156 181-346 (354)
310 COG5257 GCD11 Translation init 99.1 4.1E-10 9E-15 81.7 6.6 114 41-156 86-204 (415)
311 PF04548 AIG1: AIG1 family; I 99.1 1.8E-09 4E-14 76.1 9.6 155 1-158 9-190 (212)
312 KOG3886 GTP-binding protein [S 99.0 4E-10 8.7E-15 78.2 5.4 109 1-111 13-130 (295)
313 PRK13768 GTPase; Provisional 99.0 3.3E-09 7.1E-14 76.8 10.3 112 42-154 98-247 (253)
314 PRK10463 hydrogenase nickel in 99.0 4.6E-10 1E-14 81.7 5.8 56 97-152 230-287 (290)
315 PRK12288 GTPase RsgA; Reviewed 99.0 2.1E-09 4.5E-14 80.9 9.4 88 62-152 118-206 (347)
316 KOG1532 GTPase XAB1, interacts 99.0 3.9E-09 8.4E-14 75.3 10.0 113 41-155 116-265 (366)
317 KOG0705 GTPase-activating prot 99.0 1.3E-09 2.7E-14 84.2 7.0 152 1-159 39-194 (749)
318 TIGR02836 spore_IV_A stage IV 99.0 1.4E-08 3E-13 76.9 12.1 144 2-150 27-233 (492)
319 KOG0410 Predicted GTP binding 99.0 1.1E-09 2.4E-14 79.7 5.1 145 1-157 187-344 (410)
320 TIGR03597 GTPase_YqeH ribosome 98.9 5.2E-09 1.1E-13 79.4 8.8 95 51-152 50-151 (360)
321 PF00350 Dynamin_N: Dynamin fa 98.9 5.1E-09 1.1E-13 71.1 7.8 63 42-107 102-168 (168)
322 PF05049 IIGP: Interferon-indu 98.9 8E-09 1.7E-13 77.7 9.3 149 1-156 44-220 (376)
323 COG0050 TufB GTPases - transla 98.9 7.6E-09 1.6E-13 74.5 8.4 130 3-138 23-177 (394)
324 cd01856 YlqF YlqF. Proteins o 98.9 5.9E-09 1.3E-13 71.1 7.3 99 48-154 2-101 (171)
325 COG0012 Predicted GTPase, prob 98.9 1.8E-07 3.9E-12 69.8 13.7 75 1-76 11-109 (372)
326 cd01858 NGP_1 NGP-1. Autoanti 98.8 1.8E-08 3.9E-13 67.8 7.7 89 61-154 5-95 (157)
327 KOG0468 U5 snRNP-specific prot 98.8 1.4E-08 3E-13 80.3 7.5 104 2-109 138-261 (971)
328 PF00735 Septin: Septin; Inte 98.8 7.2E-08 1.6E-12 70.7 10.5 130 1-135 13-182 (281)
329 TIGR03596 GTPase_YlqF ribosome 98.8 4.4E-08 9.5E-13 71.9 8.7 101 48-156 4-105 (276)
330 PF00503 G-alpha: G-protein al 98.8 4.3E-08 9.4E-13 75.3 8.8 115 39-153 234-389 (389)
331 cd01849 YlqF_related_GTPase Yl 98.8 4.9E-08 1.1E-12 65.5 8.0 85 66-154 1-85 (155)
332 PRK09563 rbgA GTPase YlqF; Rev 98.7 7.7E-08 1.7E-12 71.0 7.5 101 48-156 7-108 (287)
333 TIGR00993 3a0901s04IAP86 chlor 98.7 1.9E-07 4.2E-12 74.6 9.9 109 1-111 127-250 (763)
334 smart00053 DYNc Dynamin, GTPas 98.7 2.2E-07 4.8E-12 66.4 9.3 68 41-111 125-206 (240)
335 cd01857 HSR1_MMR1 HSR1/MMR1. 98.7 9.2E-08 2E-12 63.1 7.0 76 60-141 7-84 (141)
336 COG5019 CDC3 Septin family pro 98.7 8.9E-07 1.9E-11 65.9 12.4 135 1-142 32-207 (373)
337 KOG3887 Predicted small GTPase 98.7 2.1E-07 4.6E-12 65.4 8.3 152 2-159 37-207 (347)
338 KOG0460 Mitochondrial translat 98.6 2.1E-07 4.6E-12 68.4 8.3 130 3-137 65-218 (449)
339 KOG0465 Mitochondrial elongati 98.6 1E-07 2.2E-12 74.7 6.9 108 3-114 50-173 (721)
340 KOG0464 Elongation factor G [T 98.6 8.2E-08 1.8E-12 72.4 6.1 136 2-143 47-200 (753)
341 KOG1486 GTP-binding protein DR 98.6 3.2E-06 6.8E-11 60.0 13.5 145 1-154 71-288 (364)
342 PF03308 ArgK: ArgK protein; 98.6 3.1E-08 6.7E-13 70.6 3.2 102 41-154 122-230 (266)
343 COG1703 ArgK Putative periplas 98.6 5.1E-07 1.1E-11 65.5 9.4 107 40-157 143-257 (323)
344 KOG2655 Septin family protein 98.6 1.4E-06 3E-11 65.2 11.9 148 1-156 30-216 (366)
345 cd01857 HSR1_MMR1 HSR1/MMR1. 98.5 1.3E-07 2.9E-12 62.4 4.7 47 1-51 92-138 (141)
346 KOG2486 Predicted GTPase [Gene 98.5 6.6E-08 1.4E-12 69.2 3.1 143 1-151 145-313 (320)
347 PRK01889 GTPase RsgA; Reviewed 98.5 5.4E-07 1.2E-11 68.4 8.0 83 62-150 110-193 (356)
348 PRK13796 GTPase YqeH; Provisio 98.5 9.9E-07 2.2E-11 67.2 9.3 92 53-152 58-157 (365)
349 KOG4273 Uncharacterized conser 98.5 2.6E-06 5.5E-11 60.4 9.6 147 4-152 18-220 (418)
350 KOG0467 Translation elongation 98.5 4.8E-07 1E-11 72.7 6.5 103 3-109 20-136 (887)
351 KOG1954 Endocytosis/signaling 98.4 1.2E-06 2.6E-11 65.3 7.3 113 2-117 68-231 (532)
352 KOG0099 G protein subunit Galp 98.3 6.2E-06 1.3E-10 58.9 9.2 122 36-157 197-372 (379)
353 COG1161 Predicted GTPases [Gen 98.3 1.4E-06 3E-11 65.3 4.7 48 1-52 141-188 (322)
354 COG5258 GTPBP1 GTPase [General 98.2 8.6E-06 1.9E-10 61.2 8.2 106 42-151 202-336 (527)
355 PRK09563 rbgA GTPase YlqF; Rev 98.2 4.2E-06 9.2E-11 61.8 6.0 48 1-52 130-177 (287)
356 TIGR03596 GTPase_YlqF ribosome 98.2 3.3E-06 7.1E-11 62.0 5.4 47 1-51 127-173 (276)
357 KOG1547 Septin CDC10 and relat 98.1 6.9E-05 1.5E-09 53.0 10.8 134 1-139 55-228 (336)
358 KOG0448 Mitofusin 1 GTPase, in 98.1 4.2E-05 9.1E-10 61.3 10.9 93 42-138 207-310 (749)
359 TIGR03348 VI_IcmF type VI secr 98.1 2.4E-05 5.3E-10 67.9 10.4 106 1-111 120-257 (1169)
360 COG1162 Predicted GTPases [Gen 98.1 3E-05 6.6E-10 56.8 9.1 93 57-152 72-165 (301)
361 PF03193 DUF258: Protein of un 98.1 3.8E-06 8.2E-11 56.3 3.2 51 1-54 44-100 (161)
362 TIGR00092 GTP-binding protein 98.1 1.3E-05 2.7E-10 60.7 6.3 75 1-75 11-108 (368)
363 PF06858 NOG1: Nucleolar GTP-b 98.1 2.3E-05 4.9E-10 42.7 5.6 43 65-108 14-58 (58)
364 cd01851 GBP Guanylate-binding 98.1 5.6E-05 1.2E-09 53.9 9.3 76 1-78 16-105 (224)
365 KOG1143 Predicted translation 98.0 1.6E-05 3.5E-10 59.6 6.5 104 42-149 250-383 (591)
366 KOG0085 G protein subunit Galp 98.0 8.9E-06 1.9E-10 57.1 4.5 127 31-157 189-352 (359)
367 COG0523 Putative GTPases (G3E 98.0 0.00024 5.3E-09 53.2 12.0 99 41-147 85-194 (323)
368 PRK13796 GTPase YqeH; Provisio 98.0 8.3E-06 1.8E-10 62.2 4.3 49 1-52 169-221 (365)
369 cd03112 CobW_like The function 98.0 3.6E-05 7.9E-10 51.8 6.6 64 40-109 86-158 (158)
370 PRK12288 GTPase RsgA; Reviewed 97.9 1.6E-05 3.4E-10 60.2 4.9 51 1-54 214-270 (347)
371 cd02038 FleN-like FleN is a me 97.9 3.9E-05 8.4E-10 50.5 6.0 65 41-109 45-109 (139)
372 COG1162 Predicted GTPases [Gen 97.9 1.2E-05 2.6E-10 58.8 3.9 51 1-54 173-229 (301)
373 PRK12289 GTPase RsgA; Reviewed 97.9 1.5E-05 3.2E-10 60.3 4.4 48 1-52 181-235 (352)
374 PRK10416 signal recognition pa 97.9 8.2E-05 1.8E-09 55.7 8.2 97 39-147 195-303 (318)
375 TIGR03597 GTPase_YqeH ribosome 97.9 2.2E-05 4.8E-10 59.8 5.1 49 1-52 163-215 (360)
376 TIGR00157 ribosome small subun 97.9 2E-05 4.3E-10 56.9 4.5 49 1-53 129-183 (245)
377 cd03111 CpaE_like This protein 97.9 0.00013 2.7E-09 45.7 7.3 97 1-106 9-106 (106)
378 KOG1491 Predicted GTP-binding 97.8 6.4E-05 1.4E-09 55.7 6.4 76 1-76 29-126 (391)
379 TIGR00064 ftsY signal recognit 97.8 8.1E-05 1.8E-09 54.5 6.7 96 40-147 154-261 (272)
380 cd02042 ParA ParA and ParB of 97.8 0.00013 2.8E-09 45.3 6.6 76 1-88 9-84 (104)
381 COG5192 BMS1 GTP-binding prote 97.8 0.00021 4.6E-09 56.6 8.9 126 1-138 78-210 (1077)
382 PRK11537 putative GTP-binding 97.8 0.00021 4.5E-09 53.6 8.7 85 41-135 91-186 (318)
383 COG1618 Predicted nucleotide k 97.8 0.003 6.6E-08 42.2 13.0 137 1-155 14-177 (179)
384 PRK14974 cell division protein 97.8 8.4E-05 1.8E-09 55.9 6.6 96 41-148 223-324 (336)
385 KOG0466 Translation initiation 97.7 3.1E-05 6.6E-10 56.7 3.2 112 42-155 126-242 (466)
386 TIGR01425 SRP54_euk signal rec 97.6 0.0006 1.3E-08 52.9 9.1 85 40-134 182-272 (429)
387 KOG1487 GTP-binding protein DR 97.6 0.00075 1.6E-08 48.5 8.7 78 1-81 68-153 (358)
388 PF02492 cobW: CobW/HypB/UreG, 97.6 0.00017 3.6E-09 49.5 5.3 82 41-128 85-171 (178)
389 KOG0469 Elongation factor 2 [T 97.6 0.0002 4.4E-09 55.8 6.1 79 38-120 95-174 (842)
390 cd03110 Fer4_NifH_child This p 97.6 0.00088 1.9E-08 45.9 8.6 86 39-133 91-176 (179)
391 PF09547 Spore_IV_A: Stage IV 97.5 0.0075 1.6E-07 46.6 13.5 78 67-149 148-232 (492)
392 cd01854 YjeQ_engC YjeQ/EngC. 97.5 0.00017 3.6E-09 53.4 4.6 51 1-54 170-226 (287)
393 KOG1424 Predicted GTP-binding 97.5 9.1E-05 2E-09 57.6 3.1 48 1-52 323-370 (562)
394 PRK00098 GTPase RsgA; Reviewed 97.5 0.00019 4.1E-09 53.4 4.6 50 1-53 173-228 (298)
395 KOG0447 Dynamin-like GTP bindi 97.5 0.006 1.3E-07 48.5 12.8 104 41-147 412-537 (980)
396 cd02036 MinD Bacterial cell di 97.4 0.0027 5.9E-08 43.3 9.7 84 42-132 64-147 (179)
397 PRK14722 flhF flagellar biosyn 97.4 0.0011 2.4E-08 50.6 8.1 92 40-135 215-315 (374)
398 cd03115 SRP The signal recogni 97.3 0.0018 3.9E-08 44.1 7.9 84 40-133 82-171 (173)
399 KOG0463 GTP-binding protein GP 97.3 0.00033 7.2E-09 52.9 4.2 102 42-148 220-352 (641)
400 COG3523 IcmF Type VI protein s 97.3 0.0015 3.2E-08 56.5 8.2 70 42-111 175-270 (1188)
401 cd04178 Nucleostemin_like Nucl 97.2 0.0014 3.1E-08 44.7 6.3 44 66-111 1-44 (172)
402 PRK12727 flagellar biosynthesi 97.2 0.0049 1.1E-07 49.1 10.0 89 40-142 428-523 (559)
403 COG1161 Predicted GTPases [Gen 97.1 0.0011 2.4E-08 49.9 5.5 96 45-147 14-110 (322)
404 PRK13695 putative NTPase; Prov 97.1 0.012 2.5E-07 40.2 10.0 78 60-153 92-172 (174)
405 cd01983 Fer4_NifH The Fer4_Nif 97.1 0.0044 9.4E-08 37.4 7.2 90 1-105 8-99 (99)
406 PF07015 VirC1: VirC1 protein; 97.1 0.0054 1.2E-07 43.6 8.0 104 40-148 83-188 (231)
407 PF11111 CENP-M: Centromere pr 97.0 0.015 3.3E-07 39.3 9.4 90 65-155 65-154 (176)
408 PRK10646 ADP-binding protein; 96.8 0.0063 1.4E-07 40.6 6.4 50 2-52 38-88 (153)
409 PF02367 UPF0079: Uncharacteri 96.8 0.0025 5.4E-08 40.9 4.2 52 2-56 25-79 (123)
410 KOG2484 GTPase [General functi 96.8 0.00073 1.6E-08 51.2 2.0 47 1-51 261-307 (435)
411 PRK14721 flhF flagellar biosyn 96.8 0.0053 1.1E-07 47.7 6.7 89 41-142 270-365 (420)
412 COG0802 Predicted ATPase or ki 96.8 0.0046 1E-07 40.8 5.2 52 2-53 35-86 (149)
413 PRK10867 signal recognition pa 96.7 0.011 2.4E-07 46.2 7.8 87 40-136 183-275 (433)
414 KOG0459 Polypeptide release fa 96.7 0.0038 8.2E-08 47.7 4.8 108 39-147 155-279 (501)
415 PRK05703 flhF flagellar biosyn 96.6 0.016 3.4E-07 45.4 8.3 91 40-142 299-396 (424)
416 cd03222 ABC_RNaseL_inhibitor T 96.6 0.033 7.1E-07 38.2 8.9 80 1-91 34-118 (177)
417 TIGR00150 HI0065_YjeE ATPase, 96.5 0.0095 2.1E-07 38.8 5.4 17 1-17 31-47 (133)
418 PF03266 NTPase_1: NTPase; In 96.5 0.0045 9.8E-08 42.1 4.0 127 1-142 8-163 (168)
419 PRK11889 flhF flagellar biosyn 96.5 0.04 8.6E-07 42.7 9.3 91 41-143 321-417 (436)
420 PRK06995 flhF flagellar biosyn 96.5 0.041 8.8E-07 43.7 9.6 90 41-142 335-430 (484)
421 COG0194 Gmk Guanylate kinase [ 96.4 0.0014 3.1E-08 44.8 1.3 16 1-16 13-28 (191)
422 KOG1424 Predicted GTP-binding 96.4 0.0071 1.5E-07 47.5 5.2 78 54-138 165-244 (562)
423 KOG2485 Conserved ATP/GTP bind 96.4 0.0039 8.4E-08 46.0 3.6 50 1-51 152-206 (335)
424 cd00009 AAA The AAA+ (ATPases 96.4 0.031 6.6E-07 36.2 7.5 16 1-16 28-43 (151)
425 PRK14723 flhF flagellar biosyn 96.4 0.029 6.3E-07 46.8 8.6 92 41-142 264-362 (767)
426 KOG3929 Uncharacterized conser 96.4 0.0011 2.4E-08 47.6 0.4 150 2-154 53-252 (363)
427 PHA02518 ParA-like protein; Pr 96.3 0.032 7E-07 39.0 7.6 67 40-109 76-145 (211)
428 PRK12724 flagellar biosynthesi 96.3 0.019 4.2E-07 44.6 6.8 86 40-135 299-393 (432)
429 PRK12726 flagellar biosynthesi 96.2 0.033 7.2E-07 42.8 7.4 92 40-143 285-382 (407)
430 PF13555 AAA_29: P-loop contai 96.1 0.0041 8.9E-08 34.7 1.7 14 1-14 32-45 (62)
431 KOG2484 GTPase [General functi 96.1 0.017 3.7E-07 44.1 5.4 76 53-137 135-215 (435)
432 COG1419 FlhF Flagellar GTP-bin 96.0 0.057 1.2E-06 41.6 8.1 105 40-156 281-396 (407)
433 COG3640 CooC CO dehydrogenase 96.0 0.15 3.3E-06 36.4 9.5 62 42-109 135-197 (255)
434 PRK12723 flagellar biosynthesi 95.9 0.17 3.8E-06 39.2 10.5 91 40-142 254-351 (388)
435 PF13207 AAA_17: AAA domain; P 95.9 0.0051 1.1E-07 39.1 1.8 15 1-15 8-22 (121)
436 KOG0780 Signal recognition par 95.8 0.037 8E-07 42.4 6.2 52 38-89 181-238 (483)
437 cd02019 NK Nucleoside/nucleoti 95.6 0.008 1.7E-07 34.4 1.8 15 1-15 8-22 (69)
438 COG3911 Predicted ATPase [Gene 95.6 0.0089 1.9E-07 39.5 2.0 19 1-19 18-36 (183)
439 KOG3859 Septins (P-loop GTPase 95.6 0.02 4.4E-07 41.8 3.9 50 1-50 51-104 (406)
440 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.5 0.13 2.9E-06 33.9 7.6 58 1-70 35-94 (144)
441 PRK05416 glmZ(sRNA)-inactivati 95.5 0.15 3.2E-06 37.9 8.3 41 65-108 55-95 (288)
442 PF13238 AAA_18: AAA domain; P 95.5 0.0084 1.8E-07 38.3 1.7 15 1-15 7-21 (129)
443 PF13671 AAA_33: AAA domain; P 95.5 0.0089 1.9E-07 39.1 1.8 15 1-15 8-22 (143)
444 PRK14737 gmk guanylate kinase; 95.3 0.0099 2.1E-07 41.1 1.6 16 1-16 13-28 (186)
445 KOG2423 Nucleolar GTPase [Gene 95.2 0.17 3.6E-06 39.1 7.9 88 62-157 211-302 (572)
446 PRK01889 GTPase RsgA; Reviewed 95.1 0.018 4E-07 44.0 2.7 16 1-16 204-219 (356)
447 COG1149 MinD superfamily P-loo 95.1 0.36 7.7E-06 35.3 8.9 79 42-132 165-243 (284)
448 KOG2423 Nucleolar GTPase [Gene 95.1 0.0047 1E-07 47.2 -0.6 72 1-79 316-389 (572)
449 PF00005 ABC_tran: ABC transpo 95.0 0.015 3.2E-07 37.8 1.7 16 1-16 20-35 (137)
450 PRK10751 molybdopterin-guanine 94.9 0.015 3.3E-07 39.6 1.6 15 1-15 15-29 (173)
451 PF14331 ImcF-related_N: ImcF- 94.9 0.13 2.8E-06 37.8 6.5 94 63-156 24-133 (266)
452 PRK08233 hypothetical protein; 94.9 0.016 3.5E-07 39.6 1.8 15 1-15 12-26 (182)
453 PRK04195 replication factor C 94.8 0.58 1.2E-05 37.5 10.5 16 1-16 48-63 (482)
454 COG1136 SalX ABC-type antimicr 94.8 0.016 3.5E-07 41.2 1.6 16 1-16 40-55 (226)
455 PRK14738 gmk guanylate kinase; 94.8 0.016 3.6E-07 40.7 1.5 25 130-156 171-195 (206)
456 PRK13833 conjugal transfer pro 94.7 0.12 2.5E-06 39.1 6.1 16 1-16 153-168 (323)
457 PRK07261 topology modulation p 94.7 0.019 4.2E-07 39.1 1.7 15 1-15 9-23 (171)
458 COG1116 TauB ABC-type nitrate/ 94.6 0.02 4.3E-07 41.1 1.7 15 1-15 38-52 (248)
459 cd00820 PEPCK_HprK Phosphoenol 94.6 0.021 4.5E-07 35.7 1.5 13 1-13 24-36 (107)
460 cd00071 GMPK Guanosine monopho 94.6 0.027 5.9E-07 36.9 2.1 15 1-15 8-22 (137)
461 smart00382 AAA ATPases associa 94.6 0.023 5E-07 36.4 1.8 19 1-19 11-29 (148)
462 COG4088 Predicted nucleotide k 94.6 0.26 5.7E-06 34.7 6.9 110 1-127 10-138 (261)
463 TIGR02322 phosphon_PhnN phosph 94.5 0.022 4.9E-07 38.9 1.8 15 1-15 10-24 (179)
464 cd02023 UMPK Uridine monophosp 94.5 0.022 4.9E-07 39.6 1.7 15 1-15 8-22 (198)
465 COG1126 GlnQ ABC-type polar am 94.5 0.021 4.6E-07 40.2 1.6 24 133-156 163-186 (240)
466 TIGR00235 udk uridine kinase. 94.5 0.023 4.9E-07 39.9 1.7 15 1-15 15-29 (207)
467 cd02025 PanK Pantothenate kina 94.5 0.023 5E-07 40.4 1.7 15 1-15 8-22 (220)
468 PF05879 RHD3: Root hair defec 94.5 0.085 1.8E-06 44.3 5.2 20 2-21 5-24 (742)
469 PRK08118 topology modulation p 94.5 0.024 5.3E-07 38.5 1.7 15 1-15 10-24 (167)
470 PF13521 AAA_28: AAA domain; P 94.4 0.022 4.7E-07 38.4 1.4 15 1-15 8-22 (163)
471 COG1763 MobB Molybdopterin-gua 94.4 0.023 5E-07 38.2 1.5 14 1-14 11-24 (161)
472 PTZ00293 thymidine kinase; Pro 94.3 0.38 8.3E-06 34.0 7.5 42 63-111 76-117 (211)
473 cd01131 PilT Pilus retraction 94.3 0.19 4.1E-06 35.1 6.0 16 1-16 10-25 (198)
474 PF05621 TniB: Bacterial TniB 94.3 0.22 4.8E-06 37.0 6.5 47 60-106 139-189 (302)
475 KOG1533 Predicted GTPase [Gene 94.3 0.038 8.2E-07 39.4 2.4 67 41-110 97-176 (290)
476 PRK10078 ribose 1,5-bisphospho 94.2 0.028 6E-07 38.8 1.7 21 138-158 159-179 (186)
477 PF03205 MobB: Molybdopterin g 94.2 0.031 6.7E-07 36.8 1.8 15 1-15 9-23 (140)
478 cd01129 PulE-GspE PulE/GspE Th 94.2 0.24 5.2E-06 36.3 6.6 16 1-16 89-104 (264)
479 PF13401 AAA_22: AAA domain; P 94.2 0.031 6.8E-07 35.9 1.8 16 1-16 13-28 (131)
480 TIGR01360 aden_kin_iso1 adenyl 94.2 0.029 6.3E-07 38.5 1.7 14 1-14 12-25 (188)
481 PRK00411 cdc6 cell division co 94.1 0.3 6.5E-06 37.8 7.3 15 1-15 64-78 (394)
482 PF00004 AAA: ATPase family as 94.1 0.034 7.3E-07 35.6 1.8 16 1-16 7-22 (132)
483 cd01130 VirB11-like_ATPase Typ 94.1 0.031 6.8E-07 38.6 1.7 16 1-16 34-49 (186)
484 PRK13851 type IV secretion sys 94.1 0.18 4E-06 38.4 5.9 16 1-16 171-186 (344)
485 PRK05480 uridine/cytidine kina 94.1 0.032 6.9E-07 39.2 1.8 15 1-15 15-29 (209)
486 PRK11545 gntK gluconate kinase 94.1 0.033 7.1E-07 37.6 1.7 16 1-16 4-19 (163)
487 PF13191 AAA_16: AAA ATPase do 94.1 0.034 7.3E-07 38.0 1.8 14 1-14 33-46 (185)
488 PRK13505 formate--tetrahydrofo 94.0 0.79 1.7E-05 37.0 9.4 72 79-155 357-430 (557)
489 COG4962 CpaF Flp pilus assembl 94.0 0.14 3.1E-06 38.7 5.0 19 1-19 182-200 (355)
490 PF00485 PRK: Phosphoribulokin 94.0 0.036 7.8E-07 38.5 1.8 14 1-14 8-21 (194)
491 cd03238 ABC_UvrA The excision 94.0 0.034 7.4E-07 38.1 1.7 14 1-14 30-43 (176)
492 cd03255 ABC_MJ0796_Lo1CDE_FtsE 94.0 0.033 7.2E-07 39.3 1.7 16 1-16 39-54 (218)
493 cd03225 ABC_cobalt_CbiO_domain 93.9 0.034 7.3E-07 39.1 1.7 16 1-16 36-51 (211)
494 PTZ00301 uridine kinase; Provi 93.9 0.035 7.6E-07 39.2 1.7 14 1-14 12-25 (210)
495 PRK13894 conjugal transfer ATP 93.9 0.2 4.3E-06 37.8 5.8 15 1-15 157-171 (319)
496 TIGR03371 cellulose_yhjQ cellu 93.9 0.68 1.5E-05 33.2 8.4 66 42-110 116-181 (246)
497 PRK04040 adenylate kinase; Pro 93.9 0.037 7.9E-07 38.4 1.7 15 1-15 11-25 (188)
498 KOG1534 Putative transcription 93.9 0.26 5.7E-06 34.8 5.8 114 42-155 99-252 (273)
499 TIGR01166 cbiO cobalt transpor 93.9 0.035 7.6E-07 38.4 1.6 16 1-16 27-42 (190)
500 COG4619 ABC-type uncharacteriz 93.9 0.088 1.9E-06 35.9 3.4 16 1-16 38-53 (223)
No 1
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.1e-43 Score=234.92 Aligned_cols=161 Identities=45% Similarity=0.728 Sum_probs=155.7
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|||||+|+.||.++.|.+.+..|+|+++..+.+.+++..++++||||+|+++|+++...|+++|+++|+|||+++.+||
T Consensus 18 s~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii~vyDiT~~~SF 97 (205)
T KOG0084|consen 18 SGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIFVYDITKQESF 97 (205)
T ss_pred CCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEEEEEEcccHHHh
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCe-EEEEecCCCCCHHHHHHHHHHHHHhhCCC
Q 030225 81 ERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLS-FLETSAKSAHNVNELFYEIAKRLAEVNPS 159 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~~~~~~l~~~~~~~~~~ 159 (181)
..+..|+.++..+...++|.++||||+|+.+.+.++.++++.|+..++++ ++++||+++.++++.|..|...+.++++.
T Consensus 98 ~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~~F~~la~~lk~~~~~ 177 (205)
T KOG0084|consen 98 NNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTNVEDAFLTLAKELKQRKGL 177 (205)
T ss_pred hhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCccCHHHHHHHHHHHHHHhccc
Confidence 99999999999998889999999999999999999999999999999999 99999999999999999999999998765
Q ss_pred Cc
Q 030225 160 RQ 161 (181)
Q Consensus 160 ~~ 161 (181)
..
T Consensus 178 ~~ 179 (205)
T KOG0084|consen 178 HV 179 (205)
T ss_pred CC
Confidence 33
No 2
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.5e-42 Score=229.98 Aligned_cols=180 Identities=57% Similarity=0.946 Sum_probs=163.4
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|||||||+-|+..+.|.+...+|+|.-+....+.+++..++|.||||+|+++|+++.+.|+++++++|+|||+++.+||
T Consensus 14 ~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAivvYDit~~~SF 93 (200)
T KOG0092|consen 14 SGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAIVVYDITDEESF 93 (200)
T ss_pred CCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEEEEEecccHHHH
Confidence 58999999999999999998899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHhhCCCC
Q 030225 81 ERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVNPSR 160 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~~~~ 160 (181)
..++.|++.+.+...++..+.++|||+||.+.+++..+++..++...++.++++||+++.|++++|..|.+.+..+.+..
T Consensus 94 ~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~~Ia~~lp~~~~~~ 173 (200)
T KOG0092|consen 94 EKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQAIAEKLPCSDPQE 173 (200)
T ss_pred HHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEecccccCHHHHHHHHHHhccCccccc
Confidence 99999999999988788888889999999999999999999999999999999999999999999999999999887765
Q ss_pred cc-------ccccccccCCCCCCCCCCC
Q 030225 161 QT-------GMKLHTESHGGGRRGFCCS 181 (181)
Q Consensus 161 ~~-------~~~~~~~~~~~~~~~~cc~ 181 (181)
.. +....+.+ .+...++||+
T Consensus 174 ~~~~~~~~~g~~l~~~~-~~~~~~~~C~ 200 (200)
T KOG0092|consen 174 RQGLPNRRQGVDLNSNQ-EPARPSGCCA 200 (200)
T ss_pred cccccccccceecccCC-CCcCcCCcCC
Confidence 42 23333332 4445558986
No 3
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3e-40 Score=222.76 Aligned_cols=161 Identities=42% Similarity=0.724 Sum_probs=155.6
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
||||||+|+.+|..+.+...+..|+|+++....+..++..+.+++|||+|+++|+.+...|++.|+++++|||+++..||
T Consensus 21 s~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~gi~LvyDitne~Sf 100 (207)
T KOG0078|consen 21 SGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDITNEKSF 100 (207)
T ss_pred CCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCeeEEEEEccchHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHhhCCCC
Q 030225 81 ERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVNPSR 160 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~~~~ 160 (181)
+.+..|+..+.++....+|.++||||+|+...++++.+.+++++.++|+.++|+||++|.||.+.|-.|+..+..+....
T Consensus 101 eni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~eaF~~La~~i~~k~~~~ 180 (207)
T KOG0078|consen 101 ENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAKTNFNIEEAFLSLARDILQKLEDA 180 (207)
T ss_pred HHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHhCCeEEEccccCCCCHHHHHHHHHHHHHhhcchh
Confidence 99999999999998889999999999999999999999999999999999999999999999999999999999876654
Q ss_pred c
Q 030225 161 Q 161 (181)
Q Consensus 161 ~ 161 (181)
.
T Consensus 181 ~ 181 (207)
T KOG0078|consen 181 E 181 (207)
T ss_pred h
Confidence 3
No 4
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.2e-40 Score=219.10 Aligned_cols=158 Identities=44% Similarity=0.759 Sum_probs=150.0
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
.+||||||++|++.+.+...|++|+|+++.+..+.+.+..+++++|||+|+++|+.+.+.|++++.++|+|||++|..||
T Consensus 31 qsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vaviVyDit~~~Sf 110 (221)
T KOG0094|consen 31 QSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITDRNSF 110 (221)
T ss_pred CccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEEEEEeccccchH
Confidence 37999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCC-CceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHhhCC
Q 030225 81 ERAKKWVQELQRQGNP-NLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVNP 158 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~~-~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~~ 158 (181)
+....|++.+...... ++-+++||||.||.+.+++..+++...+++++..|.++||+.|+||+.+|..|...+.+...
T Consensus 111 e~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak~g~NVk~lFrrIaa~l~~~~~ 189 (221)
T KOG0094|consen 111 ENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAKAGENVKQLFRRIAAALPGMEV 189 (221)
T ss_pred HHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEecccCCCCHHHHHHHHHHhccCccc
Confidence 9999999999887665 57888999999999999999999999999999999999999999999999999888877633
No 5
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=100.00 E-value=1e-38 Score=222.37 Aligned_cols=158 Identities=37% Similarity=0.692 Sum_probs=146.1
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|||||||+++|..+.+...+.+|++.++....+.+++..+.+.+||++|++.|..++..+++++|++|+|||++++++|
T Consensus 9 ~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVfDvtd~~Sf 88 (202)
T cd04120 9 RGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETF 88 (202)
T ss_pred CCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEEECcCHHHH
Confidence 58999999999999999999999999999888889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHc-CCeEEEEecCCCCCHHHHHHHHHHHHHhhCC
Q 030225 81 ERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQEN-GLSFLETSAKSAHNVNELFYEIAKRLAEVNP 158 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~~ 158 (181)
+.+..|+..+......+.|+++|+||+|+.+.+++...++..+++.. ++.++++||++|.||+++|++|++.+....+
T Consensus 89 ~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l~~~~~~~~~ 167 (202)
T cd04120 89 DDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKKMP 167 (202)
T ss_pred HHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHHHhCc
Confidence 99999999887765578999999999999878888888888898875 7899999999999999999999998877543
No 6
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=1.3e-38 Score=205.21 Aligned_cols=158 Identities=42% Similarity=0.744 Sum_probs=150.5
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|||||||+.++..+.+.+....|+|+++....+.+++..+++-||||+|+++|+.+.+.|++.+-++|+|||++.+++|
T Consensus 20 SGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiIlVYDVT~Rdtf 99 (209)
T KOG0080|consen 20 SGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGIILVYDVTSRDTF 99 (209)
T ss_pred CCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeEEEEEccchhhH
Confidence 69999999999999999999988899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCC-CCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHhhCC
Q 030225 81 ERAKKWVQELQRQGN-PNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVNP 158 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~-~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~~ 158 (181)
..+..|++++..++. ++...++|+||+|....+.++.+++..|++++++-++++||++.+|++..|+.|+.++.+...
T Consensus 100 ~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~FeelveKIi~tp~ 178 (209)
T KOG0080|consen 100 VKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFIECSAKTRENVQCCFEELVEKIIETPS 178 (209)
T ss_pred HhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHhhCcEEEEcchhhhccHHHHHHHHHHHHhcCcc
Confidence 999999999988754 677789999999998889999999999999999999999999999999999999999998755
No 7
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=6.5e-39 Score=203.88 Aligned_cols=156 Identities=38% Similarity=0.668 Sum_probs=149.8
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
||+|||+|+.++..+.|...|..|+|.++..+++.++|..+++.|||++|++.|+.+...|++..+++++|||+++.+||
T Consensus 17 sgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vVYDVTn~ESF 96 (198)
T KOG0079|consen 17 SGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESF 96 (198)
T ss_pred CcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEEEEECcchhhh
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHhhC
Q 030225 81 ERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVN 157 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~ 157 (181)
.+..+|++.+...+ +..|-++||||.|..+.+.+..+++++|+...|+.+|++||++.+|++..|.-|.+++.+..
T Consensus 97 ~Nv~rWLeei~~nc-dsv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF~cit~qvl~~k 172 (198)
T KOG0079|consen 97 NNVKRWLEEIRNNC-DSVPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFETSAKENENVEAMFHCITKQVLQAK 172 (198)
T ss_pred HhHHHHHHHHHhcC-ccccceecccCCCCccceeeehHHHHHHHHhcCchheehhhhhcccchHHHHHHHHHHHHHH
Confidence 99999999998886 68999999999999998999999999999999999999999999999999999998877654
No 8
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.4e-39 Score=210.81 Aligned_cols=157 Identities=44% Similarity=0.776 Sum_probs=151.9
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
.|||||+|+.+++...|.+.+..|+|+++..+.+.+++..+++++|||+|++.|+.....|++++.++|+|||+++.++|
T Consensus 15 ~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~GalLVydit~r~sF 94 (216)
T KOG0098|consen 15 TGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGALLVYDITRRESF 94 (216)
T ss_pred CCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceEEEEEccchhhH
Confidence 38999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHhhC
Q 030225 81 ERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVN 157 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~ 157 (181)
..+..|+..++.+..++..+++++||+||...+++..+++++|++++++.++++||++++|+++.|......+.+.-
T Consensus 95 ~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF~nta~~Iy~~~ 171 (216)
T KOG0098|consen 95 NHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMETSAKTAENVEEAFINTAKEIYRKI 171 (216)
T ss_pred HHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCceeehhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 99999999999998899999999999999999999999999999999999999999999999999999998888753
No 9
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=100.00 E-value=1.2e-37 Score=215.07 Aligned_cols=157 Identities=30% Similarity=0.545 Sum_probs=146.3
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|||||||+++|..+.+...+.++++.++....+.+++..+++.+||++|++.|..++..+++++|++|+|||++++.+|
T Consensus 15 ~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~illVfD~t~~~Sf 94 (189)
T cd04121 15 SDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGIILVYDITNRWSF 94 (189)
T ss_pred CCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHH
Confidence 58999999999999999888888999888888888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHhhCC
Q 030225 81 ERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVNP 158 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~~ 158 (181)
+.+..|+..+.... ++.|++|||||.|+...+.+..++++.+++.++++++++||++|.||+++|++|++.+..++.
T Consensus 95 ~~~~~w~~~i~~~~-~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~~l~~~i~~~~~ 171 (189)
T cd04121 95 DGIDRWIKEIDEHA-PGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTELARIVLMRHG 171 (189)
T ss_pred HHHHHHHHHHHHhC-CCCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHHhcC
Confidence 99999999997764 689999999999998878888999999999999999999999999999999999998887655
No 10
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=1.7e-37 Score=217.17 Aligned_cols=179 Identities=32% Similarity=0.619 Sum_probs=154.0
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEEC-CeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLN-EVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDS 79 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s 79 (181)
||||||||+++|.++.+...+.+|++.++....+.++ +..+.+.+||++|++.+..++..+++++|++|+|||++++++
T Consensus 9 ~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv~D~t~~~s 88 (201)
T cd04107 9 LGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIVFDVTRPST 88 (201)
T ss_pred CCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEEEECCCHHH
Confidence 6999999999999999999899999998888888887 788999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhC----CCCceEEEEEeCCCCcccccCCHHHHHHHHHHcC-CeEEEEecCCCCCHHHHHHHHHHHHH
Q 030225 80 FERAKKWVQELQRQG----NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYEIAKRLA 154 (181)
Q Consensus 80 ~~~~~~~~~~~~~~~----~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~~~~~l~~~~~ 154 (181)
|+.+..|+..+.... ..+.|+++++||+|+.+.+.+..+++..+++..+ ..++++||++|+|++++|++|++.+.
T Consensus 89 ~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l~~~l~ 168 (201)
T cd04107 89 FEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEAMRFLVKNIL 168 (201)
T ss_pred HHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 999999998886532 2578999999999997667788888999999998 68999999999999999999999887
Q ss_pred hhCCCCc--------cccccccccCCCCCCCCCC
Q 030225 155 EVNPSRQ--------TGMKLHTESHGGGRRGFCC 180 (181)
Q Consensus 155 ~~~~~~~--------~~~~~~~~~~~~~~~~~cc 180 (181)
+.....+ +.+.....++.++.+ +||
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 201 (201)
T cd04107 169 ANDKNLQQAETPEDGSVIDLKQTTTKKKSK-GCC 201 (201)
T ss_pred HhchhhHhhcCCCcccccccccceeccccC-CCC
Confidence 7643211 344455555555555 788
No 11
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=100.00 E-value=3.4e-37 Score=213.90 Aligned_cols=178 Identities=29% Similarity=0.478 Sum_probs=151.5
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|||||||+++|..+.+...+.++++..+. .....++..+.+.+||++|++.|..++..+++++|++|+|||++++++|
T Consensus 8 ~~vGKTsli~~l~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~ 86 (190)
T cd04144 8 GGVGKTALTIQLCLNHFVETYDPTIEDSYR-KQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSITSRSTF 86 (190)
T ss_pred CCCCHHHHHHHHHhCCCCccCCCchHhhEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEECCCHHHH
Confidence 699999999999999998888888876553 3456788888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhC---CCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHhhC
Q 030225 81 ERAKKWVQELQRQG---NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVN 157 (181)
Q Consensus 81 ~~~~~~~~~~~~~~---~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~ 157 (181)
+.+..|+..+.... ..+.|+++|+||+|+...+.+...++..+++.++++++++||++|.|++++|+++++.+..+.
T Consensus 87 ~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~~~l~~~~ 166 (190)
T cd04144 87 ERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLVRALRQQR 166 (190)
T ss_pred HHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHHHHHHHhh
Confidence 99999998887643 257899999999999877778888888888888999999999999999999999999988777
Q ss_pred CCCccccccccccCCCCCCCCCCC
Q 030225 158 PSRQTGMKLHTESHGGGRRGFCCS 181 (181)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~cc~ 181 (181)
....+....+..+..++++ ||+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~--~~~ 188 (190)
T cd04144 167 QGGQGPKGGPTKKKEKKKR--KCV 188 (190)
T ss_pred cccCCCcCCCCCccccccc--Cce
Confidence 7666665555555555544 553
No 12
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=2e-36 Score=209.82 Aligned_cols=178 Identities=35% Similarity=0.567 Sum_probs=154.7
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|||||||+++|.++.+...+.++++.++....+.+++..+.+.+||++|++.+..++..+++++|++|+|||++++++|
T Consensus 9 ~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~d~~~~~s~ 88 (188)
T cd04125 9 YGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVYDVTDQESF 88 (188)
T ss_pred CCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEEECcCHHHH
Confidence 68999999999999999887889999888888888888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHhhCCCC
Q 030225 81 ERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVNPSR 160 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~~~~ 160 (181)
+.+..|+..+........|+++++||+|+.+...+...++..+++..+++++++||+++.|++++|++|++.+..+....
T Consensus 89 ~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~~~~~~~~~~~ 168 (188)
T cd04125 89 ENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLVKLIIKRLEEQ 168 (188)
T ss_pred HHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHHhhcC
Confidence 99999999998765567899999999999877777888888888888999999999999999999999999998876655
Q ss_pred ccccccccccCCCCCCCCCCC
Q 030225 161 QTGMKLHTESHGGGRRGFCCS 181 (181)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~cc~ 181 (181)
....+-...+..++ .||+
T Consensus 169 ~~~~~~~~~~~~~~---~~~~ 186 (188)
T cd04125 169 ELSPKNIKQQFKKK---NNCF 186 (188)
T ss_pred cCCccccccccccc---cCcc
Confidence 55544333333333 5664
No 13
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=2.2e-36 Score=209.97 Aligned_cols=179 Identities=37% Similarity=0.658 Sum_probs=153.0
Q ss_pred CCCchhHHHHHHhhCCCCC-ccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhH
Q 030225 1 MGTGKTSLVLRFVKGQFFD-FQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDS 79 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s 79 (181)
+|||||||+++|..+.+.. .+.++++.++....+.+++..+.+.|||+||++.+..++..+++++|++|+|||++++++
T Consensus 9 ~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s 88 (191)
T cd04112 9 SGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDITNKAS 88 (191)
T ss_pred CCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEEEECCCHHH
Confidence 6999999999999988753 567888888877778889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHhhCCC
Q 030225 80 FERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVNPS 159 (181)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~~~ 159 (181)
++++..|+..+......+.|+++++||+|+...+.+..+++..++..++++++++||++|.|++++|++|++.+.+....
T Consensus 89 ~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~~~~~~~~~~ 168 (191)
T cd04112 89 FDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAKELKHRKYE 168 (191)
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHhccc
Confidence 99999999999887656889999999999976677777888888888899999999999999999999999999988655
Q ss_pred Ccccccccc---ccCCCCCCCCCC
Q 030225 160 RQTGMKLHT---ESHGGGRRGFCC 180 (181)
Q Consensus 160 ~~~~~~~~~---~~~~~~~~~~cc 180 (181)
..+..++.. +...+|.+ +||
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~-~~~ 191 (191)
T cd04112 169 QPDEGKFKISDYVTKQKKIS-RCC 191 (191)
T ss_pred cCCCCcEEeccccCcccccC-CCC
Confidence 444444322 23444444 788
No 14
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=100.00 E-value=2.7e-37 Score=203.28 Aligned_cols=159 Identities=37% Similarity=0.679 Sum_probs=149.8
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
||+|||||+++|...+|...+..|+|.++..+++.+++..+.++||||+|+++|.++...|++++|..++|||++++.+|
T Consensus 18 sGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCvlvydv~~~~Sf 97 (210)
T KOG0394|consen 18 SGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNNPKSF 97 (210)
T ss_pred CCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceEEEEeecCChhhh
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCC----CCceEEEEEeCCCCccc--ccCCHHHHHHHHHHcC-CeEEEEecCCCCCHHHHHHHHHHHH
Q 030225 81 ERAKKWVQELQRQGN----PNLIMFLVANKVDLEEK--RKVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYEIAKRL 153 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~----~~~p~ivi~nK~D~~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~~~~~l~~~~ 153 (181)
+.+..|.+++..+.. ...|++|+|||+|+.+. ++++...++.+++..| ++|||+||+...||.+.|+.+...+
T Consensus 98 e~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~NV~~AFe~ia~~a 177 (210)
T KOG0394|consen 98 ENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEATNVDEAFEEIARRA 177 (210)
T ss_pred ccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEecccccccHHHHHHHHHHHH
Confidence 999999999988654 46799999999999653 8899999999999986 9999999999999999999999999
Q ss_pred HhhCCC
Q 030225 154 AEVNPS 159 (181)
Q Consensus 154 ~~~~~~ 159 (181)
.+....
T Consensus 178 L~~E~~ 183 (210)
T KOG0394|consen 178 LANEDR 183 (210)
T ss_pred Hhccch
Confidence 988764
No 15
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.5e-37 Score=207.18 Aligned_cols=158 Identities=41% Similarity=0.724 Sum_probs=153.0
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
||||||-|+.|+..+.|..+..+|+|+++....+.+++..++.+||||+|+++|+....+|++.+.++++|||++...+|
T Consensus 23 S~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGAllVYDITr~~Tf 102 (222)
T KOG0087|consen 23 SAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITRRQTF 102 (222)
T ss_pred CccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccceeEEEEechhHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHhhCC
Q 030225 81 ERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVNP 158 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~~ 158 (181)
+.+.+|+.+++.+..+++++++||||+||...+.+..+++..++...++.++++||.++.|+++.|+.++..+....+
T Consensus 103 env~rWL~ELRdhad~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~aF~~~l~~I~~~vs 180 (222)
T KOG0087|consen 103 ENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFLETSALDATNVEKAFERVLTEIYKIVS 180 (222)
T ss_pred HHHHHHHHHHHhcCCCCeEEEEeecchhhhhccccchhhhHhHHHhcCceEEEecccccccHHHHHHHHHHHHHHHHH
Confidence 999999999999998999999999999999999999999999999999999999999999999999999998887544
No 16
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=100.00 E-value=4.1e-36 Score=209.82 Aligned_cols=157 Identities=38% Similarity=0.653 Sum_probs=143.6
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|||||||+++|.+..+...+.+|++.++....+..++..+.+.+||+||++.+..++..++++++++++|||++++++|
T Consensus 15 ~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iilv~D~~~~~s~ 94 (199)
T cd04110 15 SGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESF 94 (199)
T ss_pred CCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEEEEECCCHHHH
Confidence 69999999999999999888889999888888888888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHhhCC
Q 030225 81 ERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVNP 158 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~~ 158 (181)
+.+..|++.+.... +..|+++|+||+|+.....+...++..+++..+++++++||++|.||+++|++|+..+...+.
T Consensus 95 ~~~~~~~~~i~~~~-~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~l~~~~~~~~~ 171 (199)
T cd04110 95 VNVKRWLQEIEQNC-DDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNCITELVLRAKK 171 (199)
T ss_pred HHHHHHHHHHHHhC-CCCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHHHHHHHHHHhhh
Confidence 99999999987654 678999999999998777777788888888889999999999999999999999999887544
No 17
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=100.00 E-value=4.4e-36 Score=204.19 Aligned_cols=155 Identities=44% Similarity=0.772 Sum_probs=143.7
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|||||||+++|..+.+...+.++++.++....+..++..+++.+||+||++.+..++..+++++|++|+|||++++++|
T Consensus 11 ~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~ 90 (166)
T cd04122 11 MGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTY 90 (166)
T ss_pred CCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHH
Confidence 69999999999999999988888999888888888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHh
Q 030225 81 ERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAE 155 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~ 155 (181)
+.+..|+..+.....++.|+++++||+|+.+.+.+..+++..+++..+++++++||++|+|++++|.+++..+.+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l~~~~~~ 165 (166)
T cd04122 91 NHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAKKIYQ 165 (166)
T ss_pred HHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 999999999877656788999999999998878888889999999999999999999999999999999988754
No 18
>PLN03110 Rab GTPase; Provisional
Probab=100.00 E-value=1.3e-35 Score=209.57 Aligned_cols=156 Identities=41% Similarity=0.741 Sum_probs=144.7
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|||||||+++|.+..+...+.+|++.++....+.+++..+.+.+||++|++.+..++..++++++++++|||++++.+|
T Consensus 21 ~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~ 100 (216)
T PLN03110 21 SGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTF 100 (216)
T ss_pred CCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEEEEEECCChHHH
Confidence 68999999999999999888889999999888888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHhh
Q 030225 81 ERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEV 156 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~ 156 (181)
+.+..|+..+......+.|+++++||+|+...+.+..+++..++..++++++++||++|.|++++|++|+..+.+.
T Consensus 101 ~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~lf~~l~~~i~~~ 176 (216)
T PLN03110 101 DNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQTILLEIYHI 176 (216)
T ss_pred HHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 9999999999887656899999999999987778888888889888899999999999999999999999988763
No 19
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=1e-35 Score=209.37 Aligned_cols=158 Identities=37% Similarity=0.696 Sum_probs=142.5
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEE-CCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSL-NEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDS 79 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s 79 (181)
+|||||||+++|.++.+...+.+|++.++....+.+ ++..+.+.+||++|++.+..++..+++++|++++|||++++++
T Consensus 11 ~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~S 90 (211)
T cd04111 11 STVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLLVFDITNRES 90 (211)
T ss_pred CCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEEEEECCCHHH
Confidence 699999999999999998888899998888877776 4667899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCC-CCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHhhCC
Q 030225 80 FERAKKWVQELQRQGN-PNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVNP 158 (181)
Q Consensus 80 ~~~~~~~~~~~~~~~~-~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~~ 158 (181)
|+.+..|+..+..... ..+|+++|+||+|+.....+..+++..+++.++++++++||++|.|++++|++|++.+.++..
T Consensus 91 f~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l~~~~~~~~~ 170 (211)
T cd04111 91 FEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELLTQEIYERIK 170 (211)
T ss_pred HHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence 9999999999877543 457889999999998877888888999999999999999999999999999999998887644
No 20
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=100.00 E-value=7.2e-36 Score=210.25 Aligned_cols=175 Identities=33% Similarity=0.537 Sum_probs=142.0
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|||||||+++|..+.+.. +.+|++.++....+ ..+.+.+||++|++.|..++..+++++|++|+|||++++++|
T Consensus 9 ~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~~~Sf 83 (220)
T cd04126 9 MNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYDVSNVQSL 83 (220)
T ss_pred CCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEe----eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEECCCHHHH
Confidence 6899999999999999875 56888866544332 567899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEEeCCCCcc-------------------cccCCHHHHHHHHHHcC-------------
Q 030225 81 ERAKKWVQELQRQGNPNLIMFLVANKVDLEE-------------------KRKVKNEEGELYAQENG------------- 128 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~-------------------~~~~~~~~~~~~~~~~~------------- 128 (181)
+.+..|+..+......+.|+++|+||+|+.+ .+++..+++..++++.+
T Consensus 84 ~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~~~~~~~~ 163 (220)
T cd04126 84 EELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAA 163 (220)
T ss_pred HHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccccccccccc
Confidence 9999888888775556789999999999965 57888899999998876
Q ss_pred -CeEEEEecCCCCCHHHHHHHHHHHHHhhCCCC----ccccccccccCCCCCCCCCC
Q 030225 129 -LSFLETSAKSAHNVNELFYEIAKRLAEVNPSR----QTGMKLHTESHGGGRRGFCC 180 (181)
Q Consensus 129 -~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~cc 180 (181)
++|+++||++|.||+++|..+++.+.+..... ++.--.-...+.++.+++||
T Consensus 164 ~~~~~E~SA~tg~~V~elf~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (220)
T cd04126 164 EKMCFETSAKTGYNVDELFEYLFNLVLPLILAQRAEANRTQGTVNLPNPKRSKSKCC 220 (220)
T ss_pred cceEEEeeCCCCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhccccCCCcccCCCCCC
Confidence 68999999999999999999998877543222 22111223344555555888
No 21
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=2.3e-35 Score=208.83 Aligned_cols=154 Identities=23% Similarity=0.429 Sum_probs=139.4
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|||||||+++|..+.+...+.||++..+. ..+.+++..+.+.||||+|++.|..+++.+++++|++|+|||++++++|
T Consensus 22 ~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~-~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIlVyDit~~~Sf 100 (232)
T cd04174 22 VQCGKTAMLQVLAKDCYPETYVPTVFENYT-AGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETV 100 (232)
T ss_pred CCCcHHHHHHHHhcCCCCCCcCCceeeeeE-EEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEEEEECCChHHH
Confidence 589999999999999999999999987764 4577889999999999999999999999999999999999999999999
Q ss_pred HH-HHHHHHHHHHhCCCCceEEEEEeCCCCcc------------cccCCHHHHHHHHHHcCC-eEEEEecCCCC-CHHHH
Q 030225 81 ER-AKKWVQELQRQGNPNLIMFLVANKVDLEE------------KRKVKNEEGELYAQENGL-SFLETSAKSAH-NVNEL 145 (181)
Q Consensus 81 ~~-~~~~~~~~~~~~~~~~p~ivi~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~-gi~~~ 145 (181)
+. +..|+..+.... ++.|+++|+||+|+.+ .+.+..+++..+++.+++ .|++|||++|+ ||+++
T Consensus 101 ~~~~~~w~~~i~~~~-~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtSAktg~~~V~e~ 179 (232)
T cd04174 101 DSALKKWKAEIMDYC-PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECSAFTSEKSIHSI 179 (232)
T ss_pred HHHHHHHHHHHHHhC-CCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEccCCcCCcCHHHH
Confidence 98 489999998764 5789999999999854 367888999999999998 69999999998 89999
Q ss_pred HHHHHHHHHhh
Q 030225 146 FYEIAKRLAEV 156 (181)
Q Consensus 146 ~~~l~~~~~~~ 156 (181)
|+.++..+.++
T Consensus 180 F~~~~~~~~~~ 190 (232)
T cd04174 180 FRSASLLCLNK 190 (232)
T ss_pred HHHHHHHHHHh
Confidence 99999988775
No 22
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=100.00 E-value=3.7e-35 Score=207.27 Aligned_cols=156 Identities=35% Similarity=0.542 Sum_probs=141.9
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECC-eEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNE-VTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDS 79 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s 79 (181)
+|||||||+++|.++.+...+.+|++.++....+.+++ ..+.+.+||++|++.+..++..+++++|++|+|||++++++
T Consensus 9 ~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV~D~t~~~s 88 (215)
T cd04109 9 GAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLVYDVTNSQS 88 (215)
T ss_pred CCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEEEECCCHHH
Confidence 69999999999999999999999999998888887765 57899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCC---CCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHhh
Q 030225 80 FERAKKWVQELQRQGN---PNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEV 156 (181)
Q Consensus 80 ~~~~~~~~~~~~~~~~---~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~ 156 (181)
|+.+..|+..+..... ..+|+++|+||+|+.+.+.+..+++..+++.++++++++||++|+|++++|++|+..+...
T Consensus 89 ~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~~l~~~l~~~ 168 (215)
T cd04109 89 FENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQQLAAELLGV 168 (215)
T ss_pred HHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 9999999999977532 3568999999999987778888888999999999999999999999999999999998865
No 23
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=100.00 E-value=1.8e-35 Score=203.38 Aligned_cols=152 Identities=28% Similarity=0.487 Sum_probs=137.6
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|||||||+++|..+.+...+.||++..+. ..+.+++..+.+.+|||+|++.|..+++.+++++|++|+|||++++++|
T Consensus 14 ~~vGKTsli~~~~~~~f~~~~~pT~~~~~~-~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~ilvyDit~~~Sf 92 (182)
T cd04172 14 SQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETL 92 (182)
T ss_pred CCCCHHHHHHHHHhCCCCCccCCceeeeeE-EEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEEEEEECCCHHHH
Confidence 589999999999999999999999987664 5677899999999999999999999999999999999999999999999
Q ss_pred HHH-HHHHHHHHHhCCCCceEEEEEeCCCCcc------------cccCCHHHHHHHHHHcCC-eEEEEecCCCCC-HHHH
Q 030225 81 ERA-KKWVQELQRQGNPNLIMFLVANKVDLEE------------KRKVKNEEGELYAQENGL-SFLETSAKSAHN-VNEL 145 (181)
Q Consensus 81 ~~~-~~~~~~~~~~~~~~~p~ivi~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~g-i~~~ 145 (181)
+.+ ..|+..+.... ++.|+++||||+|+.+ .+.+..+++.++++.+++ +|+++||++|+| |+++
T Consensus 93 ~~~~~~w~~~i~~~~-~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~n~v~~~ 171 (182)
T cd04172 93 DSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDI 171 (182)
T ss_pred HHHHHHHHHHHHHHC-CCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECCcCCCCCCHHHH
Confidence 997 79999998765 6799999999999854 246888999999999995 899999999998 9999
Q ss_pred HHHHHHHHH
Q 030225 146 FYEIAKRLA 154 (181)
Q Consensus 146 ~~~l~~~~~ 154 (181)
|+.++..+.
T Consensus 172 F~~~~~~~~ 180 (182)
T cd04172 172 FHVATLACV 180 (182)
T ss_pred HHHHHHHHh
Confidence 999998654
No 24
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=100.00 E-value=2e-35 Score=201.96 Aligned_cols=151 Identities=32% Similarity=0.581 Sum_probs=136.4
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|||||||+.++..+.+...+.+|++..+. ..+.+++..+++.+||++|++.|..++..+++++|++|+|||++++++|
T Consensus 10 ~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~-~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd~~~~~Sf 88 (176)
T cd04133 10 GAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLISRASY 88 (176)
T ss_pred CCCcHHHHHHHHhcCCCCCCCCCcceeeeE-EEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEEEcCCHHHH
Confidence 689999999999999999889999987664 4567888999999999999999999999999999999999999999999
Q ss_pred HHH-HHHHHHHHHhCCCCceEEEEEeCCCCcccc----------cCCHHHHHHHHHHcCC-eEEEEecCCCCCHHHHHHH
Q 030225 81 ERA-KKWVQELQRQGNPNLIMFLVANKVDLEEKR----------KVKNEEGELYAQENGL-SFLETSAKSAHNVNELFYE 148 (181)
Q Consensus 81 ~~~-~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~----------~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~~~~~ 148 (181)
+.+ ..|+..+.... ++.|+++||||+|+.+.+ .+..+++..+++.+++ .++++||++|.||+++|+.
T Consensus 89 ~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~nV~~~F~~ 167 (176)
T cd04133 89 ENVLKKWVPELRHYA-PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDA 167 (176)
T ss_pred HHHHHHHHHHHHHhC-CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCcccCHHHHHHH
Confidence 998 68999987764 579999999999996532 4788899999999997 6999999999999999999
Q ss_pred HHHHH
Q 030225 149 IAKRL 153 (181)
Q Consensus 149 l~~~~ 153 (181)
+++.+
T Consensus 168 ~~~~~ 172 (176)
T cd04133 168 AIKVV 172 (176)
T ss_pred HHHHH
Confidence 99876
No 25
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=100.00 E-value=4.2e-35 Score=199.52 Aligned_cols=155 Identities=45% Similarity=0.754 Sum_probs=143.4
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
||||||||+++|.+..+...+.++++.++....+.+++..+.+.+||+||++.+..++..+++++|++++|||++++++|
T Consensus 12 ~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~ 91 (167)
T cd01867 12 SGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDEKSF 91 (167)
T ss_pred CCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEEEEECcCHHHH
Confidence 79999999999999999999999999988888888899889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHh
Q 030225 81 ERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAE 155 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~ 155 (181)
.++..|+..+......+.|+++++||+|+.+.+.+..+++..++..++++++++||++|.|++++|+++++.+..
T Consensus 92 ~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 166 (167)
T cd01867 92 ENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFTLAKDIKK 166 (167)
T ss_pred HhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 999999999987655789999999999998777778888888898889999999999999999999999998764
No 26
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=3e-36 Score=194.74 Aligned_cols=159 Identities=38% Similarity=0.706 Sum_probs=145.3
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEE-CCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSL-NEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDS 79 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s 79 (181)
+-+|||+||+.+..+++.+...||+|+++..+.+.+ ++..+++++|||+|++.|+++.+.|+++.-++++|||.++.+|
T Consensus 17 stvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgvllvyditnr~s 96 (213)
T KOG0091|consen 17 STVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGVLLVYDITNRES 96 (213)
T ss_pred CcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccceEEEEeccchhh
Confidence 358999999999999999999999999999888766 5677999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCC-CCce-EEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHhhC
Q 030225 80 FERAKKWVQELQRQGN-PNLI-MFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVN 157 (181)
Q Consensus 80 ~~~~~~~~~~~~~~~~-~~~p-~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~ 157 (181)
|+.+..|+++...+.. |.++ +++||+|+||...+++..++++.+++.+|+.++|+||++|.|+++.|+.|.+.+...-
T Consensus 97 fehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETSak~g~NVeEAF~mlaqeIf~~i 176 (213)
T KOG0091|consen 97 FEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETSAKNGCNVEEAFDMLAQEIFQAI 176 (213)
T ss_pred HHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEEEecccCCCcHHHHHHHHHHHHHHHH
Confidence 9999999999877654 4444 5777999999999999999999999999999999999999999999999999888764
Q ss_pred CC
Q 030225 158 PS 159 (181)
Q Consensus 158 ~~ 159 (181)
..
T Consensus 177 ~q 178 (213)
T KOG0091|consen 177 QQ 178 (213)
T ss_pred hc
Confidence 43
No 27
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=100.00 E-value=5.3e-35 Score=198.69 Aligned_cols=155 Identities=35% Similarity=0.640 Sum_probs=141.3
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|||||||+++|.++.+...+.++++.++....+..++..+.+.+||++|++.+..++..+++++|++++|||+++++++
T Consensus 10 ~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~s~ 89 (165)
T cd01865 10 SSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESF 89 (165)
T ss_pred CCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEEECCCHHHH
Confidence 69999999999999999888889999888777777788889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHh
Q 030225 81 ERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAE 155 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~ 155 (181)
+.+..|+..+.......+|+++++||+|+.+.+.+..+++..++...+++++++||+++.|+.++|++++..+.+
T Consensus 90 ~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~ 164 (165)
T cd01865 90 NAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLVDIICD 164 (165)
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 999999999987665688999999999998777777788888888889999999999999999999999987654
No 28
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=100.00 E-value=1.1e-34 Score=201.82 Aligned_cols=177 Identities=40% Similarity=0.643 Sum_probs=147.1
Q ss_pred CCCchhHHHHHHhhCCCCC-ccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhH
Q 030225 1 MGTGKTSLVLRFVKGQFFD-FQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDS 79 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s 79 (181)
||||||||+++|.++.+.. .+.+|++.++....+.+++..+.+.+||++|++.+..++..+++++|++++|||++++.+
T Consensus 9 ~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s 88 (193)
T cd04118 9 ESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVCYDLTDSSS 88 (193)
T ss_pred CCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEEEECCCHHH
Confidence 7999999999999998874 678899988888888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCceEEEEEeCCCCccc----ccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHh
Q 030225 80 FERAKKWVQELQRQGNPNLIMFLVANKVDLEEK----RKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAE 155 (181)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~ 155 (181)
++.+..|+..+.... ++.|+++|+||+|+.+. ..+...++..++...+++++++||+++.|++++|++|++.+.+
T Consensus 89 ~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~ 167 (193)
T cd04118 89 FERAKFWVKELQNLE-EHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQKVAEDFVS 167 (193)
T ss_pred HHHHHHHHHHHHhcC-CCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 999999999987753 57899999999998532 3455566778888888999999999999999999999999987
Q ss_pred hCCCC---ccccccccccCCCCCCCCCC
Q 030225 156 VNPSR---QTGMKLHTESHGGGRRGFCC 180 (181)
Q Consensus 156 ~~~~~---~~~~~~~~~~~~~~~~~~cc 180 (181)
..... .+...+.. +..+..++||
T Consensus 168 ~~~~~~~~~~~~~~~~--~~~~~~~~~~ 193 (193)
T cd04118 168 RANNQMNTEKGVDLGQ--KKNSYFYSCC 193 (193)
T ss_pred hcccccCCCCccccCC--cCCCCCCCCC
Confidence 64432 22333333 2233444788
No 29
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=100.00 E-value=4.8e-35 Score=198.14 Aligned_cols=152 Identities=38% Similarity=0.674 Sum_probs=141.0
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
||||||||++++..+.+.+.+.+|++.++....+.+++..+.+.+||++|++.+..++..+++++|++++|||++++++|
T Consensus 9 ~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~sf 88 (161)
T cd04117 9 SGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSY 88 (161)
T ss_pred CCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEEECCCHHHH
Confidence 69999999999999999988899999888888888898889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHH
Q 030225 81 ERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKR 152 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~ 152 (181)
+.+..|+..+......+.|+++++||.|+.+.+.+..+++..+++..+++++++||++|.|++++|.+|++.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 89 QHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLTEL 160 (161)
T ss_pred HHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHhh
Confidence 999999999887655679999999999998878888889999999899999999999999999999999864
No 30
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=100.00 E-value=5.3e-35 Score=199.84 Aligned_cols=156 Identities=30% Similarity=0.526 Sum_probs=139.9
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|||||||+++|..+.+...+.+|++..+. ..+.+++..+.+.+||+||+..+..++..++.++|++|+|||++++.+|
T Consensus 11 ~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~d~~~~~Sf 89 (172)
T cd04141 11 GGVGKSAVTMQFISHSFPDYHDPTIEDAYK-QQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIICYSVTDRHSF 89 (172)
T ss_pred CCCcHHHHHHHHHhCCCCCCcCCcccceEE-EEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEEECCchhHH
Confidence 689999999999999998888899886553 4567788889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHhhC
Q 030225 81 ERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVN 157 (181)
Q Consensus 81 ~~~~~~~~~~~~~~-~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~ 157 (181)
+.+..|...+.... ..+.|+++|+||+|+.+.+++..+++..+++.++++++++||++|.||+++|++|+..+.+..
T Consensus 90 ~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~~~ 167 (172)
T cd04141 90 QEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGLVREIRRKE 167 (172)
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHHHHHHHHhc
Confidence 99998888776643 367999999999999877888888999999999999999999999999999999999887643
No 31
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6e-36 Score=190.14 Aligned_cols=160 Identities=34% Similarity=0.617 Sum_probs=151.4
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+.||||||+.++.+..+.+.+.+|.|+++...++--....+++++|||.|++.|+.+...++++++++|++||+++.+||
T Consensus 30 ssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfiLmyDitNeeSf 109 (193)
T KOG0093|consen 30 SSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESF 109 (193)
T ss_pred CCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEEEEEecCCHHHH
Confidence 46899999999999999999999999999998876677789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHhhCCCC
Q 030225 81 ERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVNPSR 160 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~~~~ 160 (181)
..++.|.-.+...+-.+.|+++++||||+.+++.++-+.++.+++++|+.+||+||+.+.|++.+|+.++..+.++.+.+
T Consensus 110 ~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFEtSaK~NinVk~~Fe~lv~~Ic~kmses 189 (193)
T KOG0093|consen 110 NSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLGFEFFETSAKENINVKQVFERLVDIICDKMSES 189 (193)
T ss_pred HHHHHHHHHheeeeccCceEEEEecccCCccceeeeHHHHHHHHHHhChHHhhhcccccccHHHHHHHHHHHHHHHhhhh
Confidence 99999999998888789999999999999999999999999999999999999999999999999999999999876643
No 32
>PTZ00369 Ras-like protein; Provisional
Probab=100.00 E-value=4e-35 Score=203.34 Aligned_cols=157 Identities=36% Similarity=0.584 Sum_probs=140.0
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|||||||++++.++.+...+.+|++..+ ...+.+++..+.+.+||+||++.+..++..+++++|++++|||++++++|
T Consensus 14 ~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iilv~D~s~~~s~ 92 (189)
T PTZ00369 14 GGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLCVYSITSRSSF 92 (189)
T ss_pred CCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEEEEECCCHHHH
Confidence 69999999999999999888888887666 45667888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHhhCC
Q 030225 81 ERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVNP 158 (181)
Q Consensus 81 ~~~~~~~~~~~~~~-~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~~ 158 (181)
+.+..|+..+.... ..+.|+++++||+|+.+.+.+...++..+++.++++++++||++|.|++++|++|++.+.+..+
T Consensus 93 ~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~l~~~l~~~~~ 171 (189)
T PTZ00369 93 EEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYELVREIRKYLK 171 (189)
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHHHHHHHHhh
Confidence 99999999887653 3578999999999997767777777888888889999999999999999999999998877644
No 33
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=5.6e-35 Score=200.47 Aligned_cols=152 Identities=28% Similarity=0.484 Sum_probs=136.7
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|||||||+++|.++.+...+.||++..+. ..+.+++..+.+.+|||+|++.|..+++.+++++|++|+|||++++++|
T Consensus 10 ~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvfdit~~~Sf 88 (178)
T cd04131 10 VQCGKTALLQVFAKDCYPETYVPTVFENYT-ASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICFDISRPETL 88 (178)
T ss_pred CCCCHHHHHHHHHhCcCCCCcCCceEEEEE-EEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEEECCChhhH
Confidence 689999999999999999999999987764 5677889999999999999999999999999999999999999999999
Q ss_pred HHH-HHHHHHHHHhCCCCceEEEEEeCCCCcc------------cccCCHHHHHHHHHHcCC-eEEEEecCCCCC-HHHH
Q 030225 81 ERA-KKWVQELQRQGNPNLIMFLVANKVDLEE------------KRKVKNEEGELYAQENGL-SFLETSAKSAHN-VNEL 145 (181)
Q Consensus 81 ~~~-~~~~~~~~~~~~~~~p~ivi~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~g-i~~~ 145 (181)
+.+ ..|+..+.... ++.|+++||||+|+.+ .+.+..+++.++++.+++ +|+++||++|+| |+++
T Consensus 89 ~~~~~~w~~~i~~~~-~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~~~~~~v~~~ 167 (178)
T cd04131 89 DSVLKKWRGEIQEFC-PNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAFTSEKSVRDI 167 (178)
T ss_pred HHHHHHHHHHHHHHC-CCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccCcCCcCHHHH
Confidence 996 79999998765 6889999999999854 245888999999999997 899999999995 9999
Q ss_pred HHHHHHHHH
Q 030225 146 FYEIAKRLA 154 (181)
Q Consensus 146 ~~~l~~~~~ 154 (181)
|..++..+.
T Consensus 168 F~~~~~~~~ 176 (178)
T cd04131 168 FHVATMACL 176 (178)
T ss_pred HHHHHHHHh
Confidence 999998654
No 34
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=2.8e-36 Score=194.08 Aligned_cols=155 Identities=43% Similarity=0.752 Sum_probs=147.6
Q ss_pred CchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHHHH
Q 030225 3 TGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFER 82 (181)
Q Consensus 3 ~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~ 82 (181)
+|||||+-|++.++|...+..|+...+..+.+++.+....+.||||+|++.|+.+-+.|+++.+++++|||++|.+||+.
T Consensus 24 VGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGalLVyDITDrdSFqK 103 (218)
T KOG0088|consen 24 VGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGALLVYDITDRDSFQK 103 (218)
T ss_pred cchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCceEEEEeccchHHHHH
Confidence 79999999999999999999999888889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHhhC
Q 030225 83 AKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVN 157 (181)
Q Consensus 83 ~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~ 157 (181)
++.|+.+++.-....+-++||+||+|+.+.+.+..+++..++..-|..|+++||+++.||.++|+.|...+.+..
T Consensus 104 VKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~elFe~Lt~~MiE~~ 178 (218)
T KOG0088|consen 104 VKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMETSAKDNVGISELFESLTAKMIEHS 178 (218)
T ss_pred HHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhchhheecccccccCHHHHHHHHHHHHHHHh
Confidence 999999998866678889999999999999999999999999999999999999999999999999999888754
No 35
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=100.00 E-value=1.1e-34 Score=197.19 Aligned_cols=155 Identities=43% Similarity=0.752 Sum_probs=142.7
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
||||||||+++|.++.+...+.++.+.++....+.+++..+++.+||+||++.+..++..+++++|++|+|||+++++++
T Consensus 11 ~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~ 90 (166)
T cd01869 11 SGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESF 90 (166)
T ss_pred CCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEEEECcCHHHH
Confidence 69999999999999999888889999888888888888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHh
Q 030225 81 ERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAE 155 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~ 155 (181)
..+..|+..+.....++.|+++++||+|+.....+..+++..+++.++++++++||++|+|+.++|++|++.+..
T Consensus 91 ~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 165 (166)
T cd01869 91 NNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTMAREIKK 165 (166)
T ss_pred HhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHHHHHHHh
Confidence 999999999977655678999999999998777788888899999899999999999999999999999987753
No 36
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=100.00 E-value=1.2e-34 Score=201.63 Aligned_cols=153 Identities=33% Similarity=0.573 Sum_probs=137.9
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|||||||+++|+.+.+...+.+|+|.++....+.+++..+.+.|||++|++.|..++..+++++|++|+|||++++.+|
T Consensus 4 ~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~~S~ 83 (200)
T smart00176 4 GGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTARVTY 83 (200)
T ss_pred CCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCChHHH
Confidence 68999999999999999888899999999888888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHhh
Q 030225 81 ERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEV 156 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~ 156 (181)
+.+..|+..+.... .+.|+++|+||+|+.. +.+..+. ..+++..++.++++||++|+||+++|++|+..+...
T Consensus 84 ~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~-~~v~~~~-~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~~ 156 (200)
T smart00176 84 KNVPNWHRDLVRVC-ENIPIVLCGNKVDVKD-RKVKAKS-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD 156 (200)
T ss_pred HHHHHHHHHHHHhC-CCCCEEEEEECccccc-ccCCHHH-HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence 99999999998764 6899999999999854 3444443 467778889999999999999999999999988664
No 37
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=100.00 E-value=1.4e-34 Score=200.88 Aligned_cols=153 Identities=27% Similarity=0.476 Sum_probs=135.1
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|||||||+++|..+.+...+.||++..+. ..+.+++..+.+.+||++|++.|+.+++.+++++|++|+|||++++++|
T Consensus 12 ~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilvydit~~~Sf 90 (191)
T cd01875 12 GAVGKTCLLICYTTNAFPKEYIPTVFDNYS-AQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIICFSIASPSSY 90 (191)
T ss_pred CCCCHHHHHHHHHhCCCCcCCCCceEeeeE-EEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEEEECCCHHHH
Confidence 589999999999999998889999987654 4456788899999999999999999999999999999999999999999
Q ss_pred HHHH-HHHHHHHHhCCCCceEEEEEeCCCCccc------------ccCCHHHHHHHHHHcC-CeEEEEecCCCCCHHHHH
Q 030225 81 ERAK-KWVQELQRQGNPNLIMFLVANKVDLEEK------------RKVKNEEGELYAQENG-LSFLETSAKSAHNVNELF 146 (181)
Q Consensus 81 ~~~~-~~~~~~~~~~~~~~p~ivi~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~~~ 146 (181)
+.+. .|...+.... ++.|++++|||.|+.+. ..+..+++..+++.++ ++++++||++|+||+++|
T Consensus 91 ~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk~g~~v~e~f 169 (191)
T cd01875 91 ENVRHKWHPEVCHHC-PNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALNQDGVKEVF 169 (191)
T ss_pred HHHHHHHHHHHHhhC-CCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCCHHHHH
Confidence 9996 6888776653 67999999999999653 2366778889999888 589999999999999999
Q ss_pred HHHHHHHHh
Q 030225 147 YEIAKRLAE 155 (181)
Q Consensus 147 ~~l~~~~~~ 155 (181)
++|++.+..
T Consensus 170 ~~l~~~~~~ 178 (191)
T cd01875 170 AEAVRAVLN 178 (191)
T ss_pred HHHHHHHhc
Confidence 999998854
No 38
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=100.00 E-value=1.2e-34 Score=199.50 Aligned_cols=157 Identities=24% Similarity=0.451 Sum_probs=137.6
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|||||||+++|+.+.+...+.||+|.++....+..++..+.+.+||++|++.|..++..+++++|++++|||++++++|
T Consensus 9 ~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~D~t~~~s~ 88 (182)
T cd04128 9 AQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMFDLTRKSTL 88 (182)
T ss_pred CCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEEECcCHHHH
Confidence 58999999999999999988999999998888888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEEeCCCCcc-----cccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHh
Q 030225 81 ERAKKWVQELQRQGNPNLIMFLVANKVDLEE-----KRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAE 155 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~-----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~ 155 (181)
+++..|+..+........| ++|+||+|+.. ......+++..+++.++++++++||++|.|++++|+++++.+.+
T Consensus 89 ~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~~l~~~l~~ 167 (182)
T cd04128 89 NSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFKIVLAKAFD 167 (182)
T ss_pred HHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 9999999999876545566 67899999852 11223456778888889999999999999999999999998876
Q ss_pred hCC
Q 030225 156 VNP 158 (181)
Q Consensus 156 ~~~ 158 (181)
.+.
T Consensus 168 ~~~ 170 (182)
T cd04128 168 LPL 170 (182)
T ss_pred cCC
Confidence 444
No 39
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=100.00 E-value=1.8e-34 Score=196.21 Aligned_cols=154 Identities=29% Similarity=0.637 Sum_probs=141.0
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
||||||||+++|+++.+...+.++++.++....+..++..+.+.+||++|++.+..++..+++++|++|+|||+++++++
T Consensus 9 ~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~ 88 (168)
T cd04119 9 SGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVYDVTDRQSF 88 (168)
T ss_pred CCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEEECCCHHHH
Confidence 79999999999999999999999999998888888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCC-----CCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHH
Q 030225 81 ERAKKWVQELQRQGN-----PNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLA 154 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~-----~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~ 154 (181)
+.+..|+..+..... .+.|+++++||+|+.+......++...++...+++++++||++++|++++|++|++.+.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~l~ 167 (168)
T cd04119 89 EALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQTLFSSIV 167 (168)
T ss_pred HhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 999999999987643 46899999999999765667788888888888999999999999999999999998764
No 40
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=100.00 E-value=2e-34 Score=198.39 Aligned_cols=156 Identities=31% Similarity=0.560 Sum_probs=140.1
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEEC----------CeEEEEEEEeCCChhhhhccchhhccCCcEEEE
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLN----------EVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV 70 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~----------~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 70 (181)
+|||||||+++|.++.+...+.++++.++....+.+. +..+.+.+||+||++.+..++..+++++|++++
T Consensus 13 ~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 92 (180)
T cd04127 13 SGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLL 92 (180)
T ss_pred CCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHHHhCCCCEEEE
Confidence 6999999999999999999999999988876666554 456899999999999999999999999999999
Q ss_pred EEECCChhHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Q 030225 71 VYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 149 (181)
Q Consensus 71 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l 149 (181)
|||++++++|..+..|+..+.... .++.|+++|+||+|+.+.+.+..+++..+++..+++++++||++|.|++++|++|
T Consensus 93 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~v~~l~~~l 172 (180)
T cd04127 93 IFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYFETSAATGTNVEKAVERL 172 (180)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 999999999999999999987753 3578999999999998777888888899999999999999999999999999999
Q ss_pred HHHHHhh
Q 030225 150 AKRLAEV 156 (181)
Q Consensus 150 ~~~~~~~ 156 (181)
++.+.++
T Consensus 173 ~~~~~~~ 179 (180)
T cd04127 173 LDLVMKR 179 (180)
T ss_pred HHHHHhh
Confidence 9987654
No 41
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=100.00 E-value=2.9e-34 Score=194.42 Aligned_cols=154 Identities=38% Similarity=0.724 Sum_probs=146.5
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|||||||+++|.++.+...+.+|+|.+.....+..++..+.+.+||++|++.+..++..+++++|++|+|||++++++|
T Consensus 8 ~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd~~~~~S~ 87 (162)
T PF00071_consen 8 SGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFDVTDEESF 87 (162)
T ss_dssp TTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHH
T ss_pred CCCCHHHHHHHHHhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 68999999999999999999999999999999999999999999999999999999889999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHH
Q 030225 81 ERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLA 154 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~ 154 (181)
+.+..|+..+........|+++++||.|+.+.+++..+++..++++++.+|+++||+++.|+.++|..+++.+.
T Consensus 88 ~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~~i~ 161 (162)
T PF00071_consen 88 ENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELIRKIL 161 (162)
T ss_dssp HTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 99999999999887657999999999999888899999999999999999999999999999999999999875
No 42
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=100.00 E-value=4.3e-34 Score=195.00 Aligned_cols=156 Identities=33% Similarity=0.612 Sum_probs=138.5
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|||||||+++|+.+.+...+.+|++.++....+.+++..+.+.+||+||++.|..++..+++++|++++|||+++++++
T Consensus 9 ~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~ 88 (170)
T cd04108 9 LSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFDLTDVASL 88 (170)
T ss_pred CCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEECcCHHHH
Confidence 68999999999999999999999999998888888889899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCC-CCceEEEEEeCCCCccccc--CCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHhh
Q 030225 81 ERAKKWVQELQRQGN-PNLIMFLVANKVDLEEKRK--VKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEV 156 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~-~~~p~ivi~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~ 156 (181)
+.+..|+..+..... ..+|+++|+||+|+....+ ...+++..+++.++.+++++||++|.|++++|+.|+..+.+.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~~~~~~~ 167 (170)
T cd04108 89 EHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRVAALTFEL 167 (170)
T ss_pred HHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 999999998866433 4578999999999865433 345667788888889999999999999999999999988654
No 43
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=100.00 E-value=5.1e-34 Score=193.78 Aligned_cols=153 Identities=44% Similarity=0.768 Sum_probs=141.2
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
||||||||+++|.+..+...+.++++.++....+..++..+.+.+||+||+..+..++..++++++++|+|||++++.++
T Consensus 12 ~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~ 91 (165)
T cd01868 12 SGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKKQTF 91 (165)
T ss_pred CCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEEEECcCHHHH
Confidence 79999999999999999888889999988888888898889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHH
Q 030225 81 ERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 153 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~ 153 (181)
..+..|+..+......++|+++++||+|+...+++..++...+++..+++++++||++|.|++++|++|++.+
T Consensus 92 ~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 164 (165)
T cd01868 92 ENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLLTEI 164 (165)
T ss_pred HHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 9999999999887655789999999999987777788888888888889999999999999999999998765
No 44
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=100.00 E-value=6.4e-34 Score=193.90 Aligned_cols=155 Identities=44% Similarity=0.789 Sum_probs=143.0
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
||||||||+++|.+..+...+.++.|.++....+..++..+.+.+||++|++.+..+...+++++|++++|||+++++++
T Consensus 13 ~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v~d~~~~~s~ 92 (168)
T cd01866 13 TGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETF 92 (168)
T ss_pred CCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECCCHHHH
Confidence 79999999999999999888888999988888888999889999999999999999889999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHh
Q 030225 81 ERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAE 155 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~ 155 (181)
+.+..|+..+.....++.|+++++||.|+.....+..+++..++...++.++++||++++|+.++|.++++.+.+
T Consensus 93 ~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~~~~~~~~ 167 (168)
T cd01866 93 NHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFINTAKEIYE 167 (168)
T ss_pred HHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 999999999988766789999999999998767778888888898899999999999999999999999988764
No 45
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=6.4e-34 Score=197.04 Aligned_cols=158 Identities=30% Similarity=0.505 Sum_probs=135.5
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEEC-CeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLN-EVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDS 79 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s 79 (181)
+|||||||+++|.++.+...+.++++.++... +... +..+.+.+||++|++.+..++..+++++|++++|||++++++
T Consensus 9 ~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~-i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s 87 (187)
T cd04132 9 GGCGKTCLLIVYSQGKFPEEYVPTVFENYVTN-IQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLICYAVDNPTS 87 (187)
T ss_pred CCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEE-EEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEEECCCHHH
Confidence 68999999999999999888888888776443 4444 778899999999999999999999999999999999999999
Q ss_pred HHHHH-HHHHHHHHhCCCCceEEEEEeCCCCccc----ccCCHHHHHHHHHHcCC-eEEEEecCCCCCHHHHHHHHHHHH
Q 030225 80 FERAK-KWVQELQRQGNPNLIMFLVANKVDLEEK----RKVKNEEGELYAQENGL-SFLETSAKSAHNVNELFYEIAKRL 153 (181)
Q Consensus 80 ~~~~~-~~~~~~~~~~~~~~p~ivi~nK~D~~~~----~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~~~~~l~~~~ 153 (181)
|+.+. .|+..+... .++.|+++++||+|+... +.+...++.+++..+++ +++++||++|.|+.++|+++++.+
T Consensus 88 ~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~ 166 (187)
T cd04132 88 LDNVEDKWFPEVNHF-CPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEVFDTAIEEA 166 (187)
T ss_pred HHHHHHHHHHHHHHh-CCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHHHHHHHHHH
Confidence 99985 588777654 367899999999998653 24667788889998888 899999999999999999999999
Q ss_pred HhhCCCC
Q 030225 154 AEVNPSR 160 (181)
Q Consensus 154 ~~~~~~~ 160 (181)
.......
T Consensus 167 ~~~~~~~ 173 (187)
T cd04132 167 LKKEGKA 173 (187)
T ss_pred Hhhhhhh
Confidence 8775533
No 46
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=100.00 E-value=9.6e-34 Score=199.62 Aligned_cols=156 Identities=26% Similarity=0.468 Sum_probs=136.3
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|||||||+++|..+.+...+.||++..+. ..+.+++..+.+.|||++|++.|..+++.++.++|++|+|||++++++|
T Consensus 10 ~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvfdis~~~Sf 88 (222)
T cd04173 10 AECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICFDISRPETL 88 (222)
T ss_pred CCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEEECCCHHHH
Confidence 589999999999999999999999987764 5667889999999999999999999999999999999999999999999
Q ss_pred HHH-HHHHHHHHHhCCCCceEEEEEeCCCCccc------------ccCCHHHHHHHHHHcCC-eEEEEecCCCCC-HHHH
Q 030225 81 ERA-KKWVQELQRQGNPNLIMFLVANKVDLEEK------------RKVKNEEGELYAQENGL-SFLETSAKSAHN-VNEL 145 (181)
Q Consensus 81 ~~~-~~~~~~~~~~~~~~~p~ivi~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~g-i~~~ 145 (181)
+.+ ..|...+... .++.|+++|+||+|+.+. ..+..+++..++++.++ +|+||||+++++ |+++
T Consensus 89 ~~i~~~w~~~~~~~-~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~~~~~V~~~ 167 (222)
T cd04173 89 DSVLKKWQGETQEF-CPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRSSERSVRDV 167 (222)
T ss_pred HHHHHHHHHHHHhh-CCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCcCCcCHHHH
Confidence 998 4676666554 478999999999998542 24777889999999995 899999999885 9999
Q ss_pred HHHHHHHHHhhCC
Q 030225 146 FYEIAKRLAEVNP 158 (181)
Q Consensus 146 ~~~l~~~~~~~~~ 158 (181)
|+.++.+...+.+
T Consensus 168 F~~~~~~~~~~~~ 180 (222)
T cd04173 168 FHVATVASLGRGH 180 (222)
T ss_pred HHHHHHHHHhccC
Confidence 9999998777544
No 47
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=100.00 E-value=8.4e-34 Score=191.98 Aligned_cols=152 Identities=45% Similarity=0.750 Sum_probs=141.2
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
||||||||+++|.++.+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++++|++++|||+++++++
T Consensus 9 ~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~ 88 (161)
T cd04113 9 SGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITNRTSF 88 (161)
T ss_pred CCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEEECCCHHHH
Confidence 69999999999999999888889999888888888888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHH
Q 030225 81 ERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKR 152 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~ 152 (181)
..+..|+..+.....++.|+++++||+|+.....+..+++..+++..++.++++||+++.|++++|+++++.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~~~ 160 (161)
T cd04113 89 EALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCARS 160 (161)
T ss_pred HHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 999999999877666789999999999998777788888899999999999999999999999999999875
No 48
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.4e-34 Score=185.23 Aligned_cols=156 Identities=43% Similarity=0.720 Sum_probs=149.3
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|+|||+||++++..++......|+|+++.++.+++.++.++++||||.|++.|+...+.|++.+.+.++|||+++.++|
T Consensus 18 aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAlLVYD~Tsrdsf 97 (214)
T KOG0086|consen 18 AGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRDSF 97 (214)
T ss_pred CCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceEEEEeccchhhH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHhh
Q 030225 81 ERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEV 156 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~ 156 (181)
+.+..|+.-.+....+++.+++++||.|+...+++...++..|+++..+.++++||++|+|+++.|-.....+..+
T Consensus 98 naLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~flETSa~TGeNVEEaFl~c~~tIl~k 173 (214)
T KOG0086|consen 98 NALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNK 173 (214)
T ss_pred HHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhHHHHHhhhcccceeeeeecccccccHHHHHHHHHHHHHHH
Confidence 9999999999888778888999999999999999999999999999999999999999999999999888877664
No 49
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=100.00 E-value=6.2e-34 Score=195.02 Aligned_cols=151 Identities=26% Similarity=0.467 Sum_probs=132.9
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|||||||+++|..+.+...+.||++..+. ..+..++..+++.+||++|++.+..++..+++++|++|+|||++++++|
T Consensus 10 ~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d~~~~~s~ 88 (175)
T cd01874 10 GAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSF 88 (175)
T ss_pred CCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEEECCCHHHH
Confidence 689999999999999998889999987664 3456788889999999999999999999999999999999999999999
Q ss_pred HHHH-HHHHHHHHhCCCCceEEEEEeCCCCccc------------ccCCHHHHHHHHHHcC-CeEEEEecCCCCCHHHHH
Q 030225 81 ERAK-KWVQELQRQGNPNLIMFLVANKVDLEEK------------RKVKNEEGELYAQENG-LSFLETSAKSAHNVNELF 146 (181)
Q Consensus 81 ~~~~-~~~~~~~~~~~~~~p~ivi~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~~~ 146 (181)
+.+. .|+..+.... ++.|+++++||+|+.+. +.+..+++..++++.+ +.++++||++|+|++++|
T Consensus 89 ~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~tg~~v~~~f 167 (175)
T cd01874 89 ENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQKGLKNVF 167 (175)
T ss_pred HHHHHHHHHHHHHhC-CCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCCCCCHHHHH
Confidence 9996 5888886654 67899999999998543 4567788888888887 689999999999999999
Q ss_pred HHHHHHH
Q 030225 147 YEIAKRL 153 (181)
Q Consensus 147 ~~l~~~~ 153 (181)
+.++.++
T Consensus 168 ~~~~~~~ 174 (175)
T cd01874 168 DEAILAA 174 (175)
T ss_pred HHHHHHh
Confidence 9998854
No 50
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=1.2e-33 Score=191.97 Aligned_cols=152 Identities=43% Similarity=0.734 Sum_probs=138.8
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|||||||+++|..+.+...+.++.+.++....+.+++..+++.+||+||++.+..++..+++++|++++|||++++.++
T Consensus 12 ~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~llv~d~~~~~s~ 91 (165)
T cd01864 12 SNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAIIAYDITRRSSF 91 (165)
T ss_pred CCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECcCHHHH
Confidence 69999999999999999888889998888888888888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCC-eEEEEecCCCCCHHHHHHHHHHH
Q 030225 81 ERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGL-SFLETSAKSAHNVNELFYEIAKR 152 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~~~~~l~~~ 152 (181)
+.+..|+..+......+.|+++|+||+|+.+.+++...++..+++..+. .++++||++|.|++++|+++++.
T Consensus 92 ~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~l~~~ 164 (165)
T cd01864 92 ESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLLMATE 164 (165)
T ss_pred HhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHHHHHh
Confidence 9999999999876557899999999999987777788888888888875 68999999999999999999864
No 51
>PLN03118 Rab family protein; Provisional
Probab=100.00 E-value=2.5e-33 Score=197.46 Aligned_cols=180 Identities=37% Similarity=0.611 Sum_probs=146.0
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|||||||+++|.++.+. .+.++.+.++....+.+++..+.+.+||+||++.+..++..+++++|++|+|||++++++|
T Consensus 23 ~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vlv~D~~~~~sf 101 (211)
T PLN03118 23 SGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGIILVYDVTRRETF 101 (211)
T ss_pred CCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHHH
Confidence 699999999999988774 4678888888888888888889999999999999999999999999999999999999999
Q ss_pred HHHHH-HHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHhhCC
Q 030225 81 ERAKK-WVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVNP 158 (181)
Q Consensus 81 ~~~~~-~~~~~~~~~-~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~~ 158 (181)
+.+.. |...+.... ....|+++|+||+|+.....+..++...++..++++++++||+++.|++++|++|.+.+.....
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~~~~~~~~~ 181 (211)
T PLN03118 102 TNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVEQCFEELALKIMEVPS 181 (211)
T ss_pred HHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhhhh
Confidence 99876 555554432 2467899999999998777777788888888889999999999999999999999999987653
Q ss_pred CC-------ccccccccccCCCCCCCCCCC
Q 030225 159 SR-------QTGMKLHTESHGGGRRGFCCS 181 (181)
Q Consensus 159 ~~-------~~~~~~~~~~~~~~~~~~cc~ 181 (181)
.. .++..-.........+.+|||
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (211)
T PLN03118 182 LLEEGSTAVKRNILKQKPEHQPPPNGGCCS 211 (211)
T ss_pred hhhcccccccccccccccccCCCCcCCCCC
Confidence 32 122222223334456656765
No 52
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=100.00 E-value=7.8e-34 Score=192.69 Aligned_cols=153 Identities=33% Similarity=0.604 Sum_probs=135.9
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
||||||||+++++.+.+...+.+|++..+ ...+.+++..+.+.+||+||++.+..++..+++++|++++|||++++.++
T Consensus 10 ~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~ 88 (164)
T cd04175 10 GGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSITAQSTF 88 (164)
T ss_pred CCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEEECCCHHHH
Confidence 69999999999999988888888887655 35677788889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHH
Q 030225 81 ERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLA 154 (181)
Q Consensus 81 ~~~~~~~~~~~~~~-~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~ 154 (181)
+.+..|+..+.... ..+.|+++++||+|+.....+...++..+++.++++++++||+++.|++++|++|++.+.
T Consensus 89 ~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l~ 163 (164)
T cd04175 89 NDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLVRQIN 163 (164)
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHHHHhh
Confidence 99999999987643 367899999999999876677777778888888999999999999999999999998664
No 53
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=100.00 E-value=6.8e-34 Score=192.67 Aligned_cols=152 Identities=35% Similarity=0.581 Sum_probs=134.3
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
||||||||++++..+.+...+.+|++. .....+.+++..+.+.+||+||++.+..++..+++++|++++|||+++++++
T Consensus 10 ~~vGKTsl~~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~ 88 (163)
T cd04136 10 GGVGKSALTVQFVQGIFVEKYDPTIED-SYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVYSITSQSSF 88 (163)
T ss_pred CCCCHHHHHHHHHhCCCCcccCCchhh-hEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEEECCCHHHH
Confidence 799999999999999998888888763 3455667888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHH
Q 030225 81 ERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 153 (181)
Q Consensus 81 ~~~~~~~~~~~~~~-~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~ 153 (181)
+.+..|+..+.... ..+.|+++++||+|+.+.+.+..+++..+++.++.+++++||+++.|++++|++|++.+
T Consensus 89 ~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 162 (163)
T cd04136 89 NDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKINVDEVFADLVRQI 162 (163)
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHhc
Confidence 99999999887643 36789999999999977667777777888888889999999999999999999998754
No 54
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=9.7e-36 Score=186.53 Aligned_cols=180 Identities=36% Similarity=0.656 Sum_probs=160.0
Q ss_pred CCCchhHHHHHHhhCCCC-CccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhH
Q 030225 1 MGTGKTSLVLRFVKGQFF-DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDS 79 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s 79 (181)
+++|||+|+-|+..+.+. ....+|+|+++....+.+++.++++++|||.|+++|++....|++++|+++++||+.+..|
T Consensus 6 s~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydiankas 85 (192)
T KOG0083|consen 6 SCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIANKAS 85 (192)
T ss_pred CccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecccchh
Confidence 579999999998877664 4567899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHhhCCC
Q 030225 80 FERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVNPS 159 (181)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~~~ 159 (181)
|++.+.|+.++.++....+.+++++||+|+...+.+..++++.++..+++|++++||++|.|++-.|-.|.+.+.+....
T Consensus 86 fdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia~~l~k~~~~ 165 (192)
T KOG0083|consen 86 FDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIAEELKKLKMG 165 (192)
T ss_pred HHHHHHHHHHHHHHHHhhHhHhhhccccccchhhccccchHHHHHHHHCCCceeccccccccHhHHHHHHHHHHHHhccC
Confidence 99999999999998878888999999999988899999999999999999999999999999999999999999887554
Q ss_pred Cccc----cccccccCCCCCCCCCC
Q 030225 160 RQTG----MKLHTESHGGGRRGFCC 180 (181)
Q Consensus 160 ~~~~----~~~~~~~~~~~~~~~cc 180 (181)
..++ ...+.....+++-..||
T Consensus 166 ~~~~~~~~~~~~v~~~~k~eia~cc 190 (192)
T KOG0083|consen 166 APPEGEFADHDSVADEGKGEIARCC 190 (192)
T ss_pred CCCCCccccchhHHhcCCCcccccc
Confidence 3333 33445555666666788
No 55
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=100.00 E-value=2.7e-33 Score=189.84 Aligned_cols=155 Identities=48% Similarity=0.842 Sum_probs=142.9
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
||||||||+++|.+..+...+.++++.++....+..++..+++.+||+||+..+..++..+++.+|++|+|||++++.++
T Consensus 9 ~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~ 88 (164)
T smart00175 9 SGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVYDITNRESF 88 (164)
T ss_pred CCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEEECCCHHHH
Confidence 79999999999999999888889999988888888999889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHh
Q 030225 81 ERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAE 155 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~ 155 (181)
+.+..|+..+.....+++|+++++||+|+....+...+.+..+++..+++++++||+++.|++++|++|.+.+.+
T Consensus 89 ~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~~~~~~ 163 (164)
T smart00175 89 ENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELAREILK 163 (164)
T ss_pred HHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHhh
Confidence 999999999988765789999999999987767777788888888889999999999999999999999998764
No 56
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.7e-34 Score=184.20 Aligned_cols=156 Identities=43% Similarity=0.732 Sum_probs=148.2
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
.|+|||.|++++..+-+++-...|+|+++-..++.+++.+++++||||.|+++|+++...|++.++++|+|||++...+|
T Consensus 16 agvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahalilvydiscqpsf 95 (213)
T KOG0095|consen 16 AGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPSF 95 (213)
T ss_pred CCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEEEEecccCcch
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHhh
Q 030225 81 ERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEV 156 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~ 156 (181)
+.+..|+.++..+....+-.++|+||.|+.+.++++...++.|.......++++||++.+|++.+|..+...+...
T Consensus 96 dclpewlreie~yan~kvlkilvgnk~d~~drrevp~qigeefs~~qdmyfletsakea~nve~lf~~~a~rli~~ 171 (213)
T KOG0095|consen 96 DCLPEWLREIEQYANNKVLKILVGNKIDLADRREVPQQIGEEFSEAQDMYFLETSAKEADNVEKLFLDLACRLISE 171 (213)
T ss_pred hhhHHHHHHHHHHhhcceEEEeeccccchhhhhhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHHHHHHHHHHHH
Confidence 9999999999998878888899999999999999999999999999999999999999999999999988766553
No 57
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=100.00 E-value=2.7e-33 Score=190.44 Aligned_cols=153 Identities=34% Similarity=0.578 Sum_probs=135.5
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|||||||+++++.+.+...+.++++.++....+..++..+.+.+||++|++.+..++..++..+|++|+|||+++++++
T Consensus 9 ~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 88 (166)
T cd00877 9 GGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMFDVTSRVTY 88 (166)
T ss_pred CCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEEECCCHHHH
Confidence 68999999999999998888889999888888888888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHhh
Q 030225 81 ERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEV 156 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~ 156 (181)
..+..|+..+.... .+.|+++++||+|+.+ ..+. .+..++.+..++.++++||++|+|++++|++|++.+.+.
T Consensus 89 ~~~~~~~~~i~~~~-~~~piiiv~nK~Dl~~-~~~~-~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~~ 161 (166)
T cd00877 89 KNVPNWHRDLVRVC-GNIPIVLCGNKVDIKD-RKVK-AKQITFHRKKNLQYYEISAKSNYNFEKPFLWLARKLLGN 161 (166)
T ss_pred HHHHHHHHHHHHhC-CCCcEEEEEEchhccc-ccCC-HHHHHHHHHcCCEEEEEeCCCCCChHHHHHHHHHHHHhc
Confidence 99999999998875 3899999999999963 3333 344566777788999999999999999999999988753
No 58
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=100.00 E-value=2.1e-33 Score=190.13 Aligned_cols=151 Identities=36% Similarity=0.631 Sum_probs=137.3
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEEC--CeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChh
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLN--EVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMD 78 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~ 78 (181)
+|||||||+++|.++.+...+.++++.++....+.++ +..+++.+||+||++.+..++..+++++|++++|||+++++
T Consensus 9 ~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~v~d~~~~~ 88 (162)
T cd04106 9 GNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACILVFSTTDRE 88 (162)
T ss_pred CCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEEEEECCCHH
Confidence 6899999999999999988888999988877777776 77889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHH
Q 030225 79 SFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKR 152 (181)
Q Consensus 79 s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~ 152 (181)
+++.+..|+..+.... .+.|+++++||+|+.....+..+++..+++..+++++++||+++.|++++|++|...
T Consensus 89 s~~~l~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 161 (162)
T cd04106 89 SFEAIESWKEKVEAEC-GDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLAEK 161 (162)
T ss_pred HHHHHHHHHHHHHHhC-CCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 9999999999886653 678999999999998777788888888999999999999999999999999999753
No 59
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=1.9e-33 Score=194.98 Aligned_cols=156 Identities=35% Similarity=0.557 Sum_probs=134.2
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|||||||+++|..+.+...+.||++..+. ..+..++..+.+.+||++|++.+..++..+++++|++|+|||++++++|
T Consensus 9 ~~vGKTsli~~~~~~~~~~~~~~t~~~~~~-~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~dv~~~~sf 87 (189)
T cd04134 9 GACGKTSLLNVFTRGYFPQVYEPTVFENYV-HDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFSVDSPDSL 87 (189)
T ss_pred CCCCHHHHHHHHhcCCCCCccCCcceeeeE-EEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEECCCHHHH
Confidence 699999999999999998888889877654 4456778889999999999999999999999999999999999999999
Q ss_pred HHHH-HHHHHHHHhCCCCceEEEEEeCCCCcccc------------cCCHHHHHHHHHHcC-CeEEEEecCCCCCHHHHH
Q 030225 81 ERAK-KWVQELQRQGNPNLIMFLVANKVDLEEKR------------KVKNEEGELYAQENG-LSFLETSAKSAHNVNELF 146 (181)
Q Consensus 81 ~~~~-~~~~~~~~~~~~~~p~ivi~nK~D~~~~~------------~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~~~ 146 (181)
+.+. .|+..+.... ++.|+++|+||+|+.+.. .+..+++..+++..+ ++++++||++|.|++++|
T Consensus 88 ~~~~~~~~~~i~~~~-~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v~e~f 166 (189)
T cd04134 88 ENVESKWLGEIREHC-PGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKLNRGVNEAF 166 (189)
T ss_pred HHHHHHHHHHHHHhC-CCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCcCCCHHHHH
Confidence 9986 6888887654 578999999999986533 345667778887777 789999999999999999
Q ss_pred HHHHHHHHhhCC
Q 030225 147 YEIAKRLAEVNP 158 (181)
Q Consensus 147 ~~l~~~~~~~~~ 158 (181)
++|++.+....+
T Consensus 167 ~~l~~~~~~~~~ 178 (189)
T cd04134 167 TEAARVALNVRP 178 (189)
T ss_pred HHHHHHHhcccc
Confidence 999998875443
No 60
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=100.00 E-value=1.4e-33 Score=199.53 Aligned_cols=153 Identities=34% Similarity=0.539 Sum_probs=137.1
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|||||||+++++.+.+...+.+|+|.++....+..++..+.+.+||++|++.|..++..+++++|++|+|||++++++|
T Consensus 22 ~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilvfD~~~~~s~ 101 (219)
T PLN03071 22 GGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTY 101 (219)
T ss_pred CCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEEEEEeCCCHHHH
Confidence 69999999999999999999999999998888888888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHhh
Q 030225 81 ERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEV 156 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~ 156 (181)
+.+..|+..+.... .+.|++++|||+|+.. ..+..++. .+++..++.|+++||++|.|++++|+||++.+.+.
T Consensus 102 ~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~-~~v~~~~~-~~~~~~~~~~~e~SAk~~~~i~~~f~~l~~~~~~~ 174 (219)
T PLN03071 102 KNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD 174 (219)
T ss_pred HHHHHHHHHHHHhC-CCCcEEEEEEchhhhh-ccCCHHHH-HHHHhcCCEEEEcCCCCCCCHHHHHHHHHHHHHcC
Confidence 99999999998764 6799999999999854 33444444 67777889999999999999999999999988754
No 61
>PLN03108 Rab family protein; Provisional
Probab=100.00 E-value=5.2e-33 Score=195.55 Aligned_cols=157 Identities=41% Similarity=0.757 Sum_probs=144.6
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|||||||+++|.+..+...+.++++.++....+.+++..+.+.+||++|++.+..++..+++++|++++|||+++++++
T Consensus 15 ~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vlv~D~~~~~s~ 94 (210)
T PLN03108 15 TGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETF 94 (210)
T ss_pred CCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCcHHHH
Confidence 68999999999999999888889999988888888899889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHhhC
Q 030225 81 ERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVN 157 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~ 157 (181)
..+..|+..+........|+++++||+|+...+.+..+++.++++.++++++++||+++.|+.++|+++++.+.+..
T Consensus 95 ~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~~l~~~~~~~~ 171 (210)
T PLN03108 95 NHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAKIYKKI 171 (210)
T ss_pred HHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence 99999999887765568999999999999877788888999999999999999999999999999999999887653
No 62
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=100.00 E-value=4.6e-33 Score=188.29 Aligned_cols=152 Identities=45% Similarity=0.764 Sum_probs=139.5
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
||||||||+++|++..+...+.++.+.++....+..++..+++.+||+||+..+..++..+++++|++++|||++++++|
T Consensus 9 ~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~ 88 (161)
T cd01861 9 QSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRQSF 88 (161)
T ss_pred CCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcCHHHH
Confidence 69999999999999999888889999999888888888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHH
Q 030225 81 ERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKR 152 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~ 152 (181)
+.+..|+..+......+.|+++++||+|+.+......++...+++..+++++++||+++.|++++|++|.+.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~ 160 (161)
T cd01861 89 DNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIASA 160 (161)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHh
Confidence 999999999877654579999999999997667777788888888889999999999999999999999874
No 63
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=100.00 E-value=3.4e-33 Score=189.37 Aligned_cols=152 Identities=36% Similarity=0.601 Sum_probs=134.1
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
||||||||++++..+.+.+.+.++++ ++....+.+++..+.+.+||++|++.+..++..+++++|++++|||++++.++
T Consensus 10 ~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~ 88 (163)
T cd04176 10 GGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVYSLVNQQTF 88 (163)
T ss_pred CCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEEECCCHHHH
Confidence 79999999999999999888878775 44456677788888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHH
Q 030225 81 ERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 153 (181)
Q Consensus 81 ~~~~~~~~~~~~~~-~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~ 153 (181)
+++..|+..+.... ..+.|+++++||+|+.....+...+...++...+++++++||+++.|+.++|.++++.+
T Consensus 89 ~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd04176 89 QDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIVRQM 162 (163)
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHHHhc
Confidence 99999999887753 36799999999999976666677777888888889999999999999999999998754
No 64
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.5e-34 Score=186.17 Aligned_cols=157 Identities=32% Similarity=0.552 Sum_probs=143.8
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEEC---------CeEEEEEEEeCCChhhhhccchhhccCCcEEEEE
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLN---------EVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVV 71 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~---------~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 71 (181)
+||||||++.++..+++......|+|+++..+.+.++ +..+++++|||+|+++|+++..+|+++|=+++++
T Consensus 18 SGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAFfRDAMGFlLi 97 (219)
T KOG0081|consen 18 SGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLI 97 (219)
T ss_pred CCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHHHHhhccceEE
Confidence 6999999999999999999999999999887766553 3568999999999999999999999999999999
Q ss_pred EECCChhHHHHHHHHHHHHHHhCC-CCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHH
Q 030225 72 YDITSMDSFERAKKWVQELQRQGN-PNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIA 150 (181)
Q Consensus 72 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~ 150 (181)
||+++..||-+++.|+.++..+.. .++-+++++||+|+.+.+.+..+++.+++.++++|||++||-+|.|+++..+.|+
T Consensus 98 FDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA~tg~Nv~kave~Ll 177 (219)
T KOG0081|consen 98 FDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSACTGTNVEKAVELLL 177 (219)
T ss_pred EeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeeccccCcCHHHHHHHHH
Confidence 999999999999999999988643 6677999999999999999999999999999999999999999999999999988
Q ss_pred HHHHhhC
Q 030225 151 KRLAEVN 157 (181)
Q Consensus 151 ~~~~~~~ 157 (181)
..+.++.
T Consensus 178 dlvM~Ri 184 (219)
T KOG0081|consen 178 DLVMKRI 184 (219)
T ss_pred HHHHHHH
Confidence 8777653
No 65
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=100.00 E-value=1.4e-32 Score=186.34 Aligned_cols=153 Identities=69% Similarity=1.046 Sum_probs=141.0
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|||||||+++|+++.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++++|++++|||+++++++
T Consensus 10 ~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~ 89 (163)
T cd01860 10 SSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDITSEESF 89 (163)
T ss_pred CCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEEEECcCHHHH
Confidence 69999999999999999887889999888888889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHH
Q 030225 81 ERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 153 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~ 153 (181)
.....|+..+.....+..|+++++||+|+.........+...+...+++.++++||++|.|+.++|++|++.+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd01860 90 EKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTGENVNELFTEIAKKL 162 (163)
T ss_pred HHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 9999999999887667899999999999876677777888888888899999999999999999999999875
No 66
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=100.00 E-value=6e-33 Score=189.95 Aligned_cols=150 Identities=27% Similarity=0.510 Sum_probs=131.2
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|||||||+.+++.+.+...+.++++..+ ...+.+++..+++.+||++|++.+..++..+++++|++|+|||++++++|
T Consensus 10 ~~vGKSsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~sf 88 (174)
T cd01871 10 GAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASF 88 (174)
T ss_pred CCCCHHHHHHHHhcCCCCCcCCCcceeee-EEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEEECCCHHHH
Confidence 68999999999999999888889886544 44556788889999999999999999999999999999999999999999
Q ss_pred HHHH-HHHHHHHHhCCCCceEEEEEeCCCCccc------------ccCCHHHHHHHHHHcC-CeEEEEecCCCCCHHHHH
Q 030225 81 ERAK-KWVQELQRQGNPNLIMFLVANKVDLEEK------------RKVKNEEGELYAQENG-LSFLETSAKSAHNVNELF 146 (181)
Q Consensus 81 ~~~~-~~~~~~~~~~~~~~p~ivi~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~~~ 146 (181)
+.+. .|+..+.... ++.|+++++||+|+.+. +.+..+++..++++++ ++++++||++|+|++++|
T Consensus 89 ~~~~~~~~~~~~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f 167 (174)
T cd01871 89 ENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQKGLKTVF 167 (174)
T ss_pred HHHHHHHHHHHHHhC-CCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEecccccCCHHHHH
Confidence 9985 6888776653 68999999999998542 3577888899999888 499999999999999999
Q ss_pred HHHHHH
Q 030225 147 YEIAKR 152 (181)
Q Consensus 147 ~~l~~~ 152 (181)
+.+++.
T Consensus 168 ~~l~~~ 173 (174)
T cd01871 168 DEAIRA 173 (174)
T ss_pred HHHHHh
Confidence 999864
No 67
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=100.00 E-value=1.8e-32 Score=185.48 Aligned_cols=152 Identities=31% Similarity=0.507 Sum_probs=133.7
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
||||||||+++|+.+.+.+.+.++.+.++.......++..+.+.+||++|++.|..++..+++++|++++|||++++.++
T Consensus 9 ~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 88 (161)
T cd04124 9 SAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVFDVTRKITY 88 (161)
T ss_pred CCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEEECCCHHHH
Confidence 69999999999999999888888888877777778888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHhh
Q 030225 81 ERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEV 156 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~ 156 (181)
+.+..|+..+.... ++.|+++++||+|+... ...+...+++..+++++++||++|.|++++|+.+++.+.+.
T Consensus 89 ~~~~~~~~~i~~~~-~~~p~ivv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~ 160 (161)
T cd04124 89 KNLSKWYEELREYR-PEIPCIVVANKIDLDPS---VTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKLAVSY 160 (161)
T ss_pred HHHHHHHHHHHHhC-CCCcEEEEEECccCchh---HHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence 99999999987653 57899999999998432 23445566777789999999999999999999999887764
No 68
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=100.00 E-value=1.5e-32 Score=187.45 Aligned_cols=151 Identities=34% Similarity=0.612 Sum_probs=135.8
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
||||||||+++|.++.+.+.+.++++.++....+.+++..+.+.+||+||++.+..++..+++++|++++|||+++++++
T Consensus 14 ~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 93 (170)
T cd04116 14 GGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCLLTFAVDDSQSF 93 (170)
T ss_pred CCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEEEEEECCCHHHH
Confidence 69999999999999999888889999888777888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhC----CCCceEEEEEeCCCCcccccCCHHHHHHHHHHcC-CeEEEEecCCCCCHHHHHHHHHHH
Q 030225 81 ERAKKWVQELQRQG----NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYEIAKR 152 (181)
Q Consensus 81 ~~~~~~~~~~~~~~----~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~~~~~l~~~ 152 (181)
+.+..|...+.... ..+.|+++++||+|+. .+.+..+++.+++++++ .+++++||++|.|+.++|+++++.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~~~~~ 169 (170)
T cd04116 94 QNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP-ERQVSTEEAQAWCRENGDYPYFETSAKDATNVAAAFEEAVRR 169 (170)
T ss_pred HhHHHHHHHHHHhcccccCCCCcEEEEEECcccc-ccccCHHHHHHHHHHCCCCeEEEEECCCCCCHHHHHHHHHhh
Confidence 99999998886643 2568999999999986 45667788888988888 589999999999999999999865
No 69
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=100.00 E-value=2e-32 Score=186.86 Aligned_cols=153 Identities=37% Similarity=0.655 Sum_probs=139.1
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhh-ccchhhccCCcEEEEEEECCChhH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYH-SLAPMYYRGAAAAVVVYDITSMDS 79 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-~~~~~~~~~~d~~i~v~d~~~~~s 79 (181)
||||||||+++|+.+.+...+.++++.++....+.+++..+.+.+||++|++.+. .++..+++++|++++|||++++++
T Consensus 11 ~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s 90 (170)
T cd04115 11 SNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDVTNMAS 90 (170)
T ss_pred CCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEEEEECCCHHH
Confidence 6999999999999999988888999988888888899999999999999998876 578889999999999999999999
Q ss_pred HHHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCC---CCCHHHHHHHHHHHH
Q 030225 80 FERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKS---AHNVNELFYEIAKRL 153 (181)
Q Consensus 80 ~~~~~~~~~~~~~~~-~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~gi~~~~~~l~~~~ 153 (181)
+..+..|+..+.... ..+.|+++++||+|+.+.+++..+++.++++..+++++++||++ +.+++++|.+|++.+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~f~~l~~~~ 168 (170)
T cd04115 91 FHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIFMTLAHKL 168 (170)
T ss_pred HHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHHHHHHHHh
Confidence 999999999887753 36799999999999988888888888889998899999999999 899999999998765
No 70
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=100.00 E-value=1.2e-32 Score=187.01 Aligned_cols=150 Identities=37% Similarity=0.504 Sum_probs=131.5
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|||||||+++++++.+...+.++++..+ ...+..+...+.+.+||++|++.+..++..+++.+|++++|||+++++++
T Consensus 10 ~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~ 88 (165)
T cd04140 10 GGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSVTSKQSL 88 (165)
T ss_pred CCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEECCCHHHH
Confidence 69999999999999999888888877554 34456677888999999999999999889999999999999999999999
Q ss_pred HHHHHHHHHHHHhC---CCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHH
Q 030225 81 ERAKKWVQELQRQG---NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAK 151 (181)
Q Consensus 81 ~~~~~~~~~~~~~~---~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 151 (181)
+.+..|+..+.... .++.|+++++||+|+...+++...++..++..+++.++++||++|+|++++|++|+.
T Consensus 89 ~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~l~~ 162 (165)
T cd04140 89 EELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQELLN 162 (165)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHHh
Confidence 99999988776642 267899999999999776777777888888888899999999999999999999975
No 71
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=100.00 E-value=1.3e-32 Score=186.60 Aligned_cols=153 Identities=37% Similarity=0.616 Sum_probs=134.2
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
||||||||+++|+++.+...+.++++..+ .....+++..+.+.+||+||++.+..++..+++++|++++|||+++++++
T Consensus 9 ~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~ 87 (164)
T smart00173 9 GGVGKSALTIQFVQGHFVDDYDPTIEDSY-RKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYSITDRQSF 87 (164)
T ss_pred CCCCHHHHHHHHHhCcCCcccCCchhhhE-EEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEECCCHHHH
Confidence 79999999999999998888877776433 45566788889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHH
Q 030225 81 ERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLA 154 (181)
Q Consensus 81 ~~~~~~~~~~~~~~-~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~ 154 (181)
+.+..|...+.... ..+.|+++++||+|+...+.+..+++..+++..+++++++||+++.|++++|++|++.+.
T Consensus 88 ~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 162 (164)
T smart00173 88 EEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVREIR 162 (164)
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHHHHHh
Confidence 99999988876642 357899999999999776667777888888888999999999999999999999998764
No 72
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=100.00 E-value=1.8e-32 Score=187.72 Aligned_cols=153 Identities=31% Similarity=0.526 Sum_probs=133.5
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|||||||+++|.++.+...+.++++..+ ...+.+++..+.+.+||+||++.+..++..+++++|++|+|||++++++|
T Consensus 7 ~~vGKTsli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~ 85 (174)
T smart00174 7 GAVGKTCLLISYTTNAFPEDYVPTVFENY-SADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVDSPASF 85 (174)
T ss_pred CCCCHHHHHHHHHhCCCCCCCCCcEEeee-eEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECCCHHHH
Confidence 69999999999999999888888876555 34567788889999999999999999999999999999999999999999
Q ss_pred HHHH-HHHHHHHHhCCCCceEEEEEeCCCCccc------------ccCCHHHHHHHHHHcCC-eEEEEecCCCCCHHHHH
Q 030225 81 ERAK-KWVQELQRQGNPNLIMFLVANKVDLEEK------------RKVKNEEGELYAQENGL-SFLETSAKSAHNVNELF 146 (181)
Q Consensus 81 ~~~~-~~~~~~~~~~~~~~p~ivi~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~~~ 146 (181)
+.+. .|+..+.... ++.|+++++||+|+... ..+..+++..+++..+. .++++||+++.|++++|
T Consensus 86 ~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf 164 (174)
T smart00174 86 ENVKEKWYPEVKHFC-PNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQEGVREVF 164 (174)
T ss_pred HHHHHHHHHHHHhhC-CCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCCCHHHHH
Confidence 9985 5888887754 68999999999998642 23677788889999986 89999999999999999
Q ss_pred HHHHHHHHh
Q 030225 147 YEIAKRLAE 155 (181)
Q Consensus 147 ~~l~~~~~~ 155 (181)
+.|++.+.+
T Consensus 165 ~~l~~~~~~ 173 (174)
T smart00174 165 EEAIRAALN 173 (174)
T ss_pred HHHHHHhcC
Confidence 999987753
No 73
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-32 Score=174.39 Aligned_cols=155 Identities=43% Similarity=0.757 Sum_probs=148.6
Q ss_pred CCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHHH
Q 030225 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFE 81 (181)
Q Consensus 2 ~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~ 81 (181)
|+|||+|++.+...++-.....|+|+.+..+.+.+.+.+++++|||+.|+++|+...+.|++.+.+.+.|||++.+..+.
T Consensus 21 gvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagalmvyditrrstyn 100 (215)
T KOG0097|consen 21 GVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYN 100 (215)
T ss_pred cccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccceeEEEEehhhhhhh
Confidence 89999999999999998888899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHhh
Q 030225 82 RAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEV 156 (181)
Q Consensus 82 ~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~ 156 (181)
.+-.|+-..+....++..+++++||.|+...+++..+++.+|+.++|+.++++||++|+++++.|-...+++.++
T Consensus 101 hlsswl~dar~ltnpnt~i~lignkadle~qrdv~yeeak~faeengl~fle~saktg~nvedafle~akkiyqn 175 (215)
T KOG0097|consen 101 HLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFLEASAKTGQNVEDAFLETAKKIYQN 175 (215)
T ss_pred hHHHHHhhhhccCCCceEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEEEecccccCcHHHHHHHHHHHHHHh
Confidence 999999998888789999999999999999999999999999999999999999999999999999888888775
No 74
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=100.00 E-value=1.7e-32 Score=191.10 Aligned_cols=160 Identities=25% Similarity=0.276 Sum_probs=133.6
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhc--------cchhhccCCcEEEEEE
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHS--------LAPMYYRGAAAAVVVY 72 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~~~~~~~d~~i~v~ 72 (181)
||||||||+++|.++.+...+.|+++.++....+.+++..+.+.+|||||...+.. .....++++|++|+||
T Consensus 9 ~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ad~iilv~ 88 (198)
T cd04142 9 PGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRNSRAFILVY 88 (198)
T ss_pred CCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhccCCEEEEEE
Confidence 79999999999999999888889988777666777888889999999999654321 1234578999999999
Q ss_pred ECCChhHHHHHHHHHHHHHHhC---CCCceEEEEEeCCCCcccccCCHHHHHHHHH-HcCCeEEEEecCCCCCHHHHHHH
Q 030225 73 DITSMDSFERAKKWVQELQRQG---NPNLIMFLVANKVDLEEKRKVKNEEGELYAQ-ENGLSFLETSAKSAHNVNELFYE 148 (181)
Q Consensus 73 d~~~~~s~~~~~~~~~~~~~~~---~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gi~~~~~~ 148 (181)
|++++++|+.+..|+..+.... ..++|+++++||+|+...+.+..+++..++. .++++++++||++|.|++++|+.
T Consensus 89 D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~v~~lf~~ 168 (198)
T cd04142 89 DICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNWHILLLFKE 168 (198)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCCCCHHHHHHH
Confidence 9999999999999999887753 4679999999999997766666666666654 56899999999999999999999
Q ss_pred HHHHHHhhCCCC
Q 030225 149 IAKRLAEVNPSR 160 (181)
Q Consensus 149 l~~~~~~~~~~~ 160 (181)
++..+..+-+..
T Consensus 169 i~~~~~~~~~~~ 180 (198)
T cd04142 169 LLISATTRGRST 180 (198)
T ss_pred HHHHhhccCCCc
Confidence 999888765543
No 75
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=100.00 E-value=4.4e-32 Score=184.03 Aligned_cols=152 Identities=30% Similarity=0.514 Sum_probs=134.3
Q ss_pred CCCchhHHHHHHhhC--CCCCccccceeeeEEEEEEEEC-CeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCCh
Q 030225 1 MGTGKTSLVLRFVKG--QFFDFQESTIGAAFFTQVLSLN-EVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSM 77 (181)
Q Consensus 1 ~~~GKttLl~~l~~~--~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 77 (181)
+|||||||+++|..+ .+...+.+++|.++....+.++ +..+.+.+||+||+..+..++..+++++|++++|||++++
T Consensus 9 ~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~ 88 (164)
T cd04101 9 PAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFILVYDVSNK 88 (164)
T ss_pred CCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEEEEEECcCH
Confidence 699999999999865 6778888999988877766665 5679999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHH
Q 030225 78 DSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 153 (181)
Q Consensus 78 ~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~ 153 (181)
++++.+..|+..+.... .+.|+++|+||+|+....++...+...+....+++++++||+++.|++++|++|++.+
T Consensus 89 ~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 163 (164)
T cd04101 89 ASFENCSRWVNKVRTAS-KHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFESLARAF 163 (164)
T ss_pred HHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHHHHHHh
Confidence 99999999999987764 6789999999999977677777777777777889999999999999999999998865
No 76
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=100.00 E-value=3.4e-32 Score=184.00 Aligned_cols=151 Identities=32% Similarity=0.573 Sum_probs=132.2
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
||||||||+++|.++.+...+.++++..+ ...+.+++..+.+.+||++|++.+..++..+++++|++++|||+++..++
T Consensus 10 ~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~~~~~~~s~ 88 (162)
T cd04138 10 GGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINSRKSF 88 (162)
T ss_pred CCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEEECCCHHHH
Confidence 79999999999999998888888887554 45566788888899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHH
Q 030225 81 ERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 153 (181)
Q Consensus 81 ~~~~~~~~~~~~~~-~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~ 153 (181)
+.+..|+..+.... ..+.|+++++||+|+.+ ......++..+++..+++++++||++|.|++++|++|++.+
T Consensus 89 ~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 161 (162)
T cd04138 89 EDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLVREI 161 (162)
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEEECccccc-ceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHHHHHh
Confidence 99999998887753 35789999999999865 45566777788888899999999999999999999998754
No 77
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=100.00 E-value=5.1e-32 Score=183.65 Aligned_cols=152 Identities=32% Similarity=0.537 Sum_probs=133.5
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
||||||||++++++..+...+.++++..+ .....+++..+++.+||+||++++..++..+++++|++++|||++++.++
T Consensus 11 ~~~GKtsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~ 89 (164)
T cd04145 11 GGVGKSALTIQFIQSYFVTDYDPTIEDSY-TKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLVFSVTDRGSF 89 (164)
T ss_pred CCCcHHHHHHHHHhCCCCcccCCCccceE-EEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHHHH
Confidence 79999999999999988888878877544 34456788888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh-CCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHH
Q 030225 81 ERAKKWVQELQRQ-GNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 153 (181)
Q Consensus 81 ~~~~~~~~~~~~~-~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~ 153 (181)
+.+..|+..+... ...+.|+++++||+|+.....+..+++..+++..+++++++||++|.|++++|++|+..+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 163 (164)
T cd04145 90 EEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDLVRVI 163 (164)
T ss_pred HHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHHHHhh
Confidence 9999999888764 235789999999999977667777788888888889999999999999999999998764
No 78
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=100.00 E-value=1.3e-31 Score=181.14 Aligned_cols=153 Identities=48% Similarity=0.819 Sum_probs=137.7
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|||||||+++|++..+.+.+.++++.++....+...+..+.+.+||+||+..+..++..+++++|++++|||+++++++
T Consensus 9 ~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~ 88 (162)
T cd04123 9 GRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVYDITDADSF 88 (162)
T ss_pred CCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEEECCCHHHH
Confidence 69999999999999988877777887777777777888888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHH
Q 030225 81 ERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 153 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~ 153 (181)
+.+..|+..+......+.|+++++||+|+.....+..++...+++..+++++++||++++|+++++++|.+.+
T Consensus 89 ~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~~~~ 161 (162)
T cd04123 89 QKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKRM 161 (162)
T ss_pred HHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 9999999998876556789999999999987677777788888888899999999999999999999998764
No 79
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=100.00 E-value=1.6e-31 Score=182.47 Aligned_cols=157 Identities=41% Similarity=0.713 Sum_probs=139.5
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
||||||||+++|.+..+...+.++++.++....+..++..+.+.+||+||++.+..++..+++++|++|++||++++.++
T Consensus 9 ~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~ 88 (172)
T cd01862 9 SGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVTNPKSF 88 (172)
T ss_pred CCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEEECCCHHHH
Confidence 69999999999999999888888999888888888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCC----CCceEEEEEeCCCCcccccCCHHHHHHHHHHcC-CeEEEEecCCCCCHHHHHHHHHHHHHh
Q 030225 81 ERAKKWVQELQRQGN----PNLIMFLVANKVDLEEKRKVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYEIAKRLAE 155 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~----~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~~~~~l~~~~~~ 155 (181)
+.+..|...+..... .+.|+++++||+|+........++...+++..+ .+++++||++|.|++++|+++++.+.+
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~ 168 (172)
T cd01862 89 ESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAFETIARKALE 168 (172)
T ss_pred HHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 999889887755432 378999999999997656666777788888887 799999999999999999999998877
Q ss_pred hC
Q 030225 156 VN 157 (181)
Q Consensus 156 ~~ 157 (181)
..
T Consensus 169 ~~ 170 (172)
T cd01862 169 QE 170 (172)
T ss_pred cc
Confidence 63
No 80
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=100.00 E-value=7.2e-32 Score=187.32 Aligned_cols=149 Identities=24% Similarity=0.402 Sum_probs=122.6
Q ss_pred CCCchhHHHH-HHhhC-----CCCCccccceee-eEEEEE--------EEECCeEEEEEEEeCCChhhhhccchhhccCC
Q 030225 1 MGTGKTSLVL-RFVKG-----QFFDFQESTIGA-AFFTQV--------LSLNEVTIKFDIWDTAGQERYHSLAPMYYRGA 65 (181)
Q Consensus 1 ~~~GKttLl~-~l~~~-----~~~~~~~~t~~~-~~~~~~--------~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 65 (181)
+|||||||+. ++.+. .+...+.||++. +.+... ..+++..+.+.+|||+|++. .+...+++++
T Consensus 11 ~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~~~~~~~~~a 88 (195)
T cd01873 11 NAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--KDRRFAYGRS 88 (195)
T ss_pred CCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--hhhcccCCCC
Confidence 5899999995 55543 345667788863 322222 25688899999999999875 3456689999
Q ss_pred cEEEEEEECCChhHHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCcc-------------------cccCCHHHHHHHHH
Q 030225 66 AAAVVVYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE-------------------KRKVKNEEGELYAQ 125 (181)
Q Consensus 66 d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivi~nK~D~~~-------------------~~~~~~~~~~~~~~ 125 (181)
|++|+|||++++.+|+.+. .|+..+.... ++.|+++|+||+|+.+ .+.+..+++..+++
T Consensus 89 d~iilv~d~t~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~~~e~~~~a~ 167 (195)
T cd01873 89 DVVLLCFSIASPNSLRNVKTMWYPEIRHFC-PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPPETGRAVAK 167 (195)
T ss_pred CEEEEEEECCChhHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhccccccchhhhcccccccccccCCccCHHHHHHHHH
Confidence 9999999999999999996 5988887664 5789999999999863 36788899999999
Q ss_pred HcCCeEEEEecCCCCCHHHHHHHHHHH
Q 030225 126 ENGLSFLETSAKSAHNVNELFYEIAKR 152 (181)
Q Consensus 126 ~~~~~~~~~Sa~~~~gi~~~~~~l~~~ 152 (181)
.++++|++|||++|+||+++|+.++++
T Consensus 168 ~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 168 ELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred HhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 999999999999999999999999864
No 81
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=100.00 E-value=9.7e-32 Score=192.66 Aligned_cols=152 Identities=24% Similarity=0.405 Sum_probs=132.5
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|||||||+++|+++.+...+.+|++ ++....+.+++..+.+.|||++|++.|..++..++.++|++|+|||++++++|
T Consensus 9 ~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfdv~~~~Sf 87 (247)
T cd04143 9 SKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFSLDNRESF 87 (247)
T ss_pred CCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEeCCCHHHH
Confidence 68999999999999999888888886 45556778889999999999999999988888889999999999999999999
Q ss_pred HHHHHHHHHHHHh---------CCCCceEEEEEeCCCCcccccCCHHHHHHHHHH-cCCeEEEEecCCCCCHHHHHHHHH
Q 030225 81 ERAKKWVQELQRQ---------GNPNLIMFLVANKVDLEEKRKVKNEEGELYAQE-NGLSFLETSAKSAHNVNELFYEIA 150 (181)
Q Consensus 81 ~~~~~~~~~~~~~---------~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~gi~~~~~~l~ 150 (181)
+++..|+..+... ...+.|+++++||+|+...+++..++..+++.. .++.++++||+++.|++++|++|+
T Consensus 88 ~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI~elf~~L~ 167 (247)
T cd04143 88 EEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNLDEMFRALF 167 (247)
T ss_pred HHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHH
Confidence 9999999988653 235789999999999976667777777777654 368899999999999999999999
Q ss_pred HHH
Q 030225 151 KRL 153 (181)
Q Consensus 151 ~~~ 153 (181)
..+
T Consensus 168 ~~~ 170 (247)
T cd04143 168 SLA 170 (247)
T ss_pred HHh
Confidence 865
No 82
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=100.00 E-value=2.7e-31 Score=179.65 Aligned_cols=151 Identities=40% Similarity=0.731 Sum_probs=135.9
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
||||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++++|++++|||++++.++
T Consensus 9 ~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 88 (161)
T cd01863 9 SGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVYDVTRRDTF 88 (161)
T ss_pred CCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEEECCCHHHH
Confidence 69999999999999988887889999888878788888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHH
Q 030225 81 ERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKR 152 (181)
Q Consensus 81 ~~~~~~~~~~~~~~-~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~ 152 (181)
+.+..|++.+.... ..+.|+++++||+|+.. .....++...+++..+++++++||++|.|++++++++++.
T Consensus 89 ~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~~~ 160 (161)
T cd01863 89 TNLETWLNELETYSTNNDIVKMLVGNKIDKEN-REVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELVEK 160 (161)
T ss_pred HhHHHHHHHHHHhCCCCCCcEEEEEECCcccc-cccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHHh
Confidence 99999999987764 36899999999999863 4556677888888899999999999999999999999875
No 83
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=100.00 E-value=6.4e-32 Score=184.12 Aligned_cols=153 Identities=21% Similarity=0.260 Sum_probs=132.3
Q ss_pred CCCchhHHHHHHhhCCCC-CccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhH
Q 030225 1 MGTGKTSLVLRFVKGQFF-DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDS 79 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s 79 (181)
+|||||||+++|+++.+. ..+.||++.++....+.+++..+.+.+||++|++.+..++..+++++|++++|||++++.+
T Consensus 13 ~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~llv~d~~~~~s 92 (169)
T cd01892 13 KGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVACLVYDSSDPKS 92 (169)
T ss_pred CCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEEEEEEeCCCHHH
Confidence 699999999999999998 8888999988877778888888899999999999999899999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCC-eEEEEecCCCCCHHHHHHHHHHHHHh
Q 030225 80 FERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGL-SFLETSAKSAHNVNELFYEIAKRLAE 155 (181)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~~~~~l~~~~~~ 155 (181)
++.+..|+..+... .++|+++|+||+|+.+.......+...+++.+++ .++++||++++|++++|+.|++.+..
T Consensus 93 ~~~~~~~~~~~~~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~~~~ 167 (169)
T cd01892 93 FSYCAEVYKKYFML--GEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELFTKLATAAQY 167 (169)
T ss_pred HHHHHHHHHHhccC--CCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCccHHHHHHHHHHHhhC
Confidence 99998888766332 4789999999999965554444456677777777 47999999999999999999998763
No 84
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=100.00 E-value=3.2e-31 Score=178.27 Aligned_cols=150 Identities=51% Similarity=0.875 Sum_probs=139.0
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
||||||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||+..+...+..+++++|++++|+|+++++++
T Consensus 9 ~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~ 88 (159)
T cd00154 9 SGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVYDITNRESF 88 (159)
T ss_pred CCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEEECCCHHHH
Confidence 79999999999999999988889999999999999998889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHH
Q 030225 81 ERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIA 150 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~ 150 (181)
..+..|+..+........|+++++||+|+........++...+....+.+++++||+++.|+++++++|.
T Consensus 89 ~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~ 158 (159)
T cd00154 89 ENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLA 158 (159)
T ss_pred HHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHh
Confidence 9999999999887657899999999999975567778888888888899999999999999999999986
No 85
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=100.00 E-value=1.6e-31 Score=181.52 Aligned_cols=153 Identities=30% Similarity=0.471 Sum_probs=131.0
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhh-hhccchhhccCCcEEEEEEECCChhH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER-YHSLAPMYYRGAAAAVVVYDITSMDS 79 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s 79 (181)
||||||||+++++...+...+.++.+..+ ...+.+++..+.+.+||+||+.. +...+..+++++|++|+|||++++++
T Consensus 8 ~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s 86 (165)
T cd04146 8 SGVGKSALVVRFLTKRFIGEYDPNLESLY-SRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVYSITDRSS 86 (165)
T ss_pred CCCcHHHHHHHHHhCccccccCCChHHhc-eEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEEECCCHHH
Confidence 69999999999999888777777765444 45567788889999999999885 34456778999999999999999999
Q ss_pred HHHHHHHHHHHHHhC--CCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCC-CCHHHHHHHHHHHHH
Q 030225 80 FERAKKWVQELQRQG--NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSA-HNVNELFYEIAKRLA 154 (181)
Q Consensus 80 ~~~~~~~~~~~~~~~--~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~-~gi~~~~~~l~~~~~ 154 (181)
|+.+..|+..+.... ..+.|+++++||+|+...+.+..+++..+++..+.+++++||+++ .|++++|++|++.+.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~l~~~~~ 164 (165)
T cd04146 87 FDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHELCREVR 164 (165)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHHHHHHHh
Confidence 999999998887753 357999999999999777777888888899888999999999999 599999999998764
No 86
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=100.00 E-value=4e-31 Score=180.11 Aligned_cols=153 Identities=30% Similarity=0.555 Sum_probs=135.1
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
||||||||+++|.++.+...+.++++..+ ...+..++..+.+.+||+||++.|..++..++++++++++|||+++++++
T Consensus 10 ~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~~~~~~~s~ 88 (168)
T cd04177 10 GGVGKSALTVQFVQNVFIESYDPTIEDSY-RKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVYSVTSEASL 88 (168)
T ss_pred CCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEEECCCHHHH
Confidence 79999999999999999888888887544 56667888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHHHHcC-CeEEEEecCCCCCHHHHHHHHHHHHH
Q 030225 81 ERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYEIAKRLA 154 (181)
Q Consensus 81 ~~~~~~~~~~~~~~-~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~~~~~l~~~~~ 154 (181)
+.+..|...+.... ..+.|+++++||.|+.+.+....+++..+++.++ ++++++||+++.|++++|++++..+.
T Consensus 89 ~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i~~~~~ 164 (168)
T cd04177 89 NELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDLVRQII 164 (168)
T ss_pred HHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHHHHHHh
Confidence 99999998887632 3579999999999997777777777788888887 89999999999999999999997653
No 87
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=100.00 E-value=4.8e-31 Score=180.53 Aligned_cols=149 Identities=24% Similarity=0.469 Sum_probs=129.4
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|||||||++++.++.+...+.+|.. +.....+.+++..+++.+||+||++.+..++..+++++|++|+|||++++++|
T Consensus 9 ~~~GKtsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d~~~~~sf 87 (173)
T cd04130 9 GAVGKTSLIVSYTTNGYPTEYVPTAF-DNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFSVVNPSSF 87 (173)
T ss_pred CCCCHHHHHHHHHhCCCCCCCCCcee-eeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEEECCCHHHH
Confidence 69999999999999999888877764 44455677888889999999999999999999999999999999999999999
Q ss_pred HHHH-HHHHHHHHhCCCCceEEEEEeCCCCcc------------cccCCHHHHHHHHHHcCC-eEEEEecCCCCCHHHHH
Q 030225 81 ERAK-KWVQELQRQGNPNLIMFLVANKVDLEE------------KRKVKNEEGELYAQENGL-SFLETSAKSAHNVNELF 146 (181)
Q Consensus 81 ~~~~-~~~~~~~~~~~~~~p~ivi~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~~~ 146 (181)
+.+. .|+..+... .++.|+++++||+|+.. .+.+..+++..+++..+. .++++||++|.|++++|
T Consensus 88 ~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~lf 166 (173)
T cd04130 88 QNISEKWIPEIRKH-NPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQKNLKEVF 166 (173)
T ss_pred HHHHHHHHHHHHhh-CCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHH
Confidence 9974 688888754 35789999999999853 356777888899998887 89999999999999999
Q ss_pred HHHHH
Q 030225 147 YEIAK 151 (181)
Q Consensus 147 ~~l~~ 151 (181)
+.++-
T Consensus 167 ~~~~~ 171 (173)
T cd04130 167 DTAIL 171 (173)
T ss_pred HHHHh
Confidence 98864
No 88
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=1.1e-30 Score=177.96 Aligned_cols=153 Identities=42% Similarity=0.736 Sum_probs=136.7
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
||||||||+++|.++.+.+.+.++++.++....+.+++..+.+.+||+||+..+...+..+++.+|++++|||+++++++
T Consensus 16 ~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 95 (169)
T cd04114 16 AGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESF 95 (169)
T ss_pred CCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHH
Confidence 69999999999998888877888888888888888899889999999999999999889999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHH
Q 030225 81 ERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 153 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~ 153 (181)
+.+..|+..+......+.|+++++||+|+...+++.......+.+....+++++||++|.|++++|++|.+.+
T Consensus 96 ~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~ 168 (169)
T cd04114 96 RCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDLACRL 168 (169)
T ss_pred HHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHHHHHh
Confidence 9999999988776556799999999999977777777767777777778999999999999999999998754
No 89
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=100.00 E-value=5.8e-31 Score=177.38 Aligned_cols=145 Identities=20% Similarity=0.374 Sum_probs=122.9
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|||||||+++++.+.+.+.+.++ +..+ ...+.+++..+.+.+||++|++. ..+++++|++++|||++++++|
T Consensus 9 ~gvGKTsli~~~~~~~f~~~~~~~-~~~~-~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~d~~~~~sf 81 (158)
T cd04103 9 LQSGKSALVHRYLTGSYVQLESPE-GGRF-KKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVFSLENEASF 81 (158)
T ss_pred CCCcHHHHHHHHHhCCCCCCCCCC-ccce-EEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEEECCCHHHH
Confidence 589999999999999887776554 3333 45678888889999999999964 3467889999999999999999
Q ss_pred HHHHHHHHHHHHhCC-CCceEEEEEeCCCCc--ccccCCHHHHHHHHHHc-CCeEEEEecCCCCCHHHHHHHHHHH
Q 030225 81 ERAKKWVQELQRQGN-PNLIMFLVANKVDLE--EKRKVKNEEGELYAQEN-GLSFLETSAKSAHNVNELFYEIAKR 152 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~-~~~p~ivi~nK~D~~--~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~gi~~~~~~l~~~ 152 (181)
+++..|+..+..... .+.|+++++||.|+. ..+++..+++.++++.. ++.|++|||++|.||+++|+++++.
T Consensus 82 ~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~~~~~ 157 (158)
T cd04103 82 QTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQEAAQK 157 (158)
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHHHHhh
Confidence 999999999977643 678999999999985 35678888888888776 4899999999999999999999864
No 90
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.98 E-value=1e-30 Score=185.10 Aligned_cols=154 Identities=30% Similarity=0.367 Sum_probs=132.1
Q ss_pred CCCchhHHHHHHhhCCCC-CccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhcc-CCcEEEEEEECCChh
Q 030225 1 MGTGKTSLVLRFVKGQFF-DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYR-GAAAAVVVYDITSMD 78 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~-~~d~~i~v~d~~~~~ 78 (181)
+|||||||+++|..+.+. ..+.++.+.++....+.+++..+.+.+||++|++. .....++. ++|++++|||++++.
T Consensus 9 ~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~--~~~~~~~~~~ad~iilV~d~td~~ 86 (221)
T cd04148 9 PGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM--WTEDSCMQYQGDAFVVVYSVTDRS 86 (221)
T ss_pred CCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch--HHHhHHhhcCCCEEEEEEECCCHH
Confidence 699999999999988886 66767776567777788888899999999999972 23345666 999999999999999
Q ss_pred HHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHhh
Q 030225 79 SFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEV 156 (181)
Q Consensus 79 s~~~~~~~~~~~~~~~-~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~ 156 (181)
+|+.+..|+..+.... ..++|+++|+||+|+...+.+..+++..++..++++++++||+++.|++++|++|+..+..+
T Consensus 87 S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~l~~~~~~~ 165 (221)
T cd04148 87 SFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEGIVRQIRLR 165 (221)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHhh
Confidence 9999999999887753 25799999999999987777777888888888899999999999999999999999988643
No 91
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.98 E-value=1.9e-30 Score=177.68 Aligned_cols=151 Identities=26% Similarity=0.483 Sum_probs=130.2
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|+|||||+++|..+.+...+.++++..+ ...+.+++..+.+.+||++|++.+..++..+++++|++++|||++++++|
T Consensus 9 ~~~GKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~~~~~~s~ 87 (174)
T cd04135 9 GAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASF 87 (174)
T ss_pred CCCCHHHHHHHHHhCCCCCCCCCceeeee-EEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEEECCCHHHH
Confidence 69999999999999999888877776443 44567788888999999999999999999999999999999999999999
Q ss_pred HHHH-HHHHHHHHhCCCCceEEEEEeCCCCccc------------ccCCHHHHHHHHHHcCC-eEEEEecCCCCCHHHHH
Q 030225 81 ERAK-KWVQELQRQGNPNLIMFLVANKVDLEEK------------RKVKNEEGELYAQENGL-SFLETSAKSAHNVNELF 146 (181)
Q Consensus 81 ~~~~-~~~~~~~~~~~~~~p~ivi~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~~~ 146 (181)
+.+. .|+..+... .++.|+++++||+|+.+. ..+..+++..+++..+. +++++||++|.|++++|
T Consensus 88 ~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~~f 166 (174)
T cd04135 88 QNVKEEWVPELKEY-APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALTQKGLKTVF 166 (174)
T ss_pred HHHHHHHHHHHHhh-CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCcCCCHHHHH
Confidence 9885 677777655 578999999999998542 25667788888888885 79999999999999999
Q ss_pred HHHHHHH
Q 030225 147 YEIAKRL 153 (181)
Q Consensus 147 ~~l~~~~ 153 (181)
+.++..+
T Consensus 167 ~~~~~~~ 173 (174)
T cd04135 167 DEAILAI 173 (174)
T ss_pred HHHHHHh
Confidence 9998865
No 92
>PTZ00099 rab6; Provisional
Probab=99.98 E-value=6.8e-30 Score=174.69 Aligned_cols=144 Identities=46% Similarity=0.722 Sum_probs=130.6
Q ss_pred CCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhC
Q 030225 15 GQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQG 94 (181)
Q Consensus 15 ~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~ 94 (181)
+.|.+.+.+|+|.++....+.+++..+++.||||+|++.+..++..+++++|++|+|||++++++|+.+..|+..+....
T Consensus 3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~ 82 (176)
T PTZ00099 3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER 82 (176)
T ss_pred CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 45677888999999988888899999999999999999999999999999999999999999999999999999987765
Q ss_pred CCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHhhCC
Q 030225 95 NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVNP 158 (181)
Q Consensus 95 ~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~~ 158 (181)
....|+++|+||+|+.+.+.+..+++..++..+++.++++||++|+||+++|++|++.+.+...
T Consensus 83 ~~~~piilVgNK~DL~~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~~~ 146 (176)
T PTZ00099 83 GKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNLDN 146 (176)
T ss_pred CCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhccc
Confidence 5678999999999997767788888888888889999999999999999999999999877543
No 93
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.97 E-value=6.8e-30 Score=173.09 Aligned_cols=154 Identities=33% Similarity=0.594 Sum_probs=134.7
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
||||||||+++|....+...+.++++..+ ......++..+.+.+||+||+..+..++..+++.++++++|+|++++.++
T Consensus 9 ~~~GKTsl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~ 87 (164)
T cd04139 9 GGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFSITDMESF 87 (164)
T ss_pred CCCCHHHHHHHHHhCCCccccCCcchhhE-EEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEECCCHHHH
Confidence 79999999999999998887777776544 45567888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHh
Q 030225 81 ERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAE 155 (181)
Q Consensus 81 ~~~~~~~~~~~~~~-~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~ 155 (181)
..+..|+..+.... ..++|+++++||+|+.+.......+...+++.++++++++||++++|++++|+++.+.+.+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 163 (164)
T cd04139 88 TATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLVREIRQ 163 (164)
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHHHHHHh
Confidence 99999998887753 3579999999999997655566677778888888999999999999999999999987754
No 94
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.97 E-value=1.5e-31 Score=181.41 Aligned_cols=146 Identities=21% Similarity=0.301 Sum_probs=121.7
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|||||||+++|.++.+...+.||+|... ..+++..+++.+||+||+..+..++..+++++|++++|||++++.++
T Consensus 8 ~~vGKTsli~~~~~~~~~~~~~pt~g~~~----~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~~s~ 83 (164)
T cd04162 8 DGAGKTSLLHSLSSERSLESVVPTTGFNS----VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSADSERL 83 (164)
T ss_pred CCCCHHHHHHHHhcCCCcccccccCCcce----EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHHHH
Confidence 68999999999999988888889988643 23455678899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCH----HHHHHHHHHcCCeEEEEecCC------CCCHHHHHHHHH
Q 030225 81 ERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKN----EEGELYAQENGLSFLETSAKS------AHNVNELFYEIA 150 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~----~~~~~~~~~~~~~~~~~Sa~~------~~gi~~~~~~l~ 150 (181)
...+.|+..+.... +++|+++++||+|+...+.+.. .++..++++.++.++++||++ ++|++++|+.++
T Consensus 84 ~~~~~~l~~~~~~~-~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~~~~~~~~ 162 (164)
T cd04162 84 PLARQELHQLLQHP-PDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVKDLLSQLI 162 (164)
T ss_pred HHHHHHHHHHHhCC-CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHHHHHHHHh
Confidence 99999988886553 6899999999999866543321 123455666778899999888 999999999986
Q ss_pred H
Q 030225 151 K 151 (181)
Q Consensus 151 ~ 151 (181)
.
T Consensus 163 ~ 163 (164)
T cd04162 163 N 163 (164)
T ss_pred c
Confidence 4
No 95
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.97 E-value=6.1e-30 Score=172.59 Aligned_cols=151 Identities=36% Similarity=0.615 Sum_probs=134.3
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
||||||||+++|++..+...+.++.+ +.....+..++..+++.+||+||+..+..++..+++++|++++|||+++++++
T Consensus 8 ~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~ 86 (160)
T cd00876 8 GGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSITDRESF 86 (160)
T ss_pred CCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEECCCHHHH
Confidence 69999999999999888888877776 55566677777789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCC-CCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHH
Q 030225 81 ERAKKWVQELQRQGN-PNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKR 152 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~-~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~ 152 (181)
+.+..|+..+..... ..+|+++++||+|+........+++.+++..++.+++++||+++.|++++|++|++.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~ 159 (160)
T cd00876 87 EEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVRE 159 (160)
T ss_pred HHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHhh
Confidence 999999988877643 589999999999997767777788888888888999999999999999999999875
No 96
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.97 E-value=1.6e-29 Score=175.03 Aligned_cols=156 Identities=30% Similarity=0.511 Sum_probs=130.4
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|+|||||+++|..+.+.+.+.++++..+. ..+.+++..+.+.+||++|++.+......++.++|+++++||+++.+++
T Consensus 10 ~g~GKStLl~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~i~~~~s~ 88 (187)
T cd04129 10 GACGKTSLLSVFTLGEFPEEYHPTVFENYV-TDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGFAVDTPDSL 88 (187)
T ss_pred CCCCHHHHHHHHHhCCCCcccCCcccceEE-EEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEEECCCHHHH
Confidence 689999999999988887777777665543 3556778888999999999988887777788999999999999999999
Q ss_pred HHHH-HHHHHHHHhCCCCceEEEEEeCCCCcc----------cccCCHHHHHHHHHHcCC-eEEEEecCCCCCHHHHHHH
Q 030225 81 ERAK-KWVQELQRQGNPNLIMFLVANKVDLEE----------KRKVKNEEGELYAQENGL-SFLETSAKSAHNVNELFYE 148 (181)
Q Consensus 81 ~~~~-~~~~~~~~~~~~~~p~ivi~nK~D~~~----------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~~~~~ 148 (181)
+.+. .|+..+.... ++.|+++|+||+|+.. .+.+..+++..+++..+. +++++||++|.|++++|++
T Consensus 89 ~~~~~~~~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~ 167 (187)
T cd04129 89 ENVRTKWIEEVRRYC-PNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGEGVDDVFEA 167 (187)
T ss_pred HHHHHHHHHHHHHhC-CCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCCCHHHHHHH
Confidence 9986 6888887654 5799999999999854 234555677888888885 8999999999999999999
Q ss_pred HHHHHHhhCC
Q 030225 149 IAKRLAEVNP 158 (181)
Q Consensus 149 l~~~~~~~~~ 158 (181)
+++.+....+
T Consensus 168 l~~~~~~~~~ 177 (187)
T cd04129 168 ATRAALLVRK 177 (187)
T ss_pred HHHHHhcccC
Confidence 9988766543
No 97
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.97 E-value=5.4e-30 Score=177.11 Aligned_cols=155 Identities=36% Similarity=0.611 Sum_probs=144.2
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|||||+|..++....+.+.|.||++ +.+.+.+.+++..+.+.|+||+|++++..+...++.++|++++||+++|..||
T Consensus 12 ~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lVysitd~~SF 90 (196)
T KOG0395|consen 12 GGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLVYSITDRSSF 90 (196)
T ss_pred CCCCcchheeeecccccccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEEEECCCHHHH
Confidence 68999999999999999999999998 56677788889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh-CCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHhh
Q 030225 81 ERAKKWVQELQRQ-GNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEV 156 (181)
Q Consensus 81 ~~~~~~~~~~~~~-~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~ 156 (181)
+.+..+++.+.+. .....|+++||||+|+...+.+..+++..++..++++++|+||+.+.+++++|..|+..+...
T Consensus 91 ~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~L~r~~~~~ 167 (196)
T KOG0395|consen 91 EEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFYELVREIRLP 167 (196)
T ss_pred HHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHHHHHHHHHhh
Confidence 9999999999553 336689999999999998899999999999999999999999999999999999999988873
No 98
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.97 E-value=2e-29 Score=173.48 Aligned_cols=157 Identities=33% Similarity=0.509 Sum_probs=135.5
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
||||||||+++|.+..+...+.++.+..+ ...+..++..+.+.+||+||+..+..++..++..++++++|||+++..++
T Consensus 10 ~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~ 88 (180)
T cd04137 10 RSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYSVTSRKSF 88 (180)
T ss_pred CCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEECCCHHHH
Confidence 79999999999999988877777776544 45556777888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHhhCC
Q 030225 81 ERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVNP 158 (181)
Q Consensus 81 ~~~~~~~~~~~~~~-~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~~ 158 (181)
+.+..|+..+.... ..+.|+++++||+|+...+.+...+...+++.++.+++++||+++.|+.++|++|.+.+...+.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~~~ 167 (180)
T cd04137 89 EVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLIEEIEKVEN 167 (180)
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHhcC
Confidence 99999988887743 3578999999999997656666667777788888999999999999999999999998876643
No 99
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.97 E-value=2.5e-30 Score=176.06 Aligned_cols=144 Identities=22% Similarity=0.348 Sum_probs=115.5
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|||||||+++|..+.+.. +.||+|.++.. +. ...+.+.+||+||++.+..++..+++++|++|+|||++++.++
T Consensus 18 ~~~GKTsli~~l~~~~~~~-~~~t~g~~~~~--~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~D~t~~~s~ 92 (168)
T cd04149 18 DAAGKTTILYKLKLGQSVT-TIPTVGFNVET--VT--YKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRI 92 (168)
T ss_pred CCCCHHHHHHHHccCCCcc-ccCCcccceEE--EE--ECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCchhhH
Confidence 6999999999999877654 56888866542 22 3457899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh-CCCCceEEEEEeCCCCcccccCCHHHHHHHHHH-----cCCeEEEEecCCCCCHHHHHHHHHH
Q 030225 81 ERAKKWVQELQRQ-GNPNLIMFLVANKVDLEEKRKVKNEEGELYAQE-----NGLSFLETSAKSAHNVNELFYEIAK 151 (181)
Q Consensus 81 ~~~~~~~~~~~~~-~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~gi~~~~~~l~~ 151 (181)
+++..|+..+... ...++|+++++||+|+.+. +..+++..++.. ..+.++++||++|.|++++|+||.+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~~~~~l~~ 167 (168)
T cd04149 93 DEARQELHRIINDREMRDALLLVFANKQDLPDA--MKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLSS 167 (168)
T ss_pred HHHHHHHHHHhcCHhhcCCcEEEEEECcCCccC--CCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHHHHHHHhc
Confidence 9998888777653 2357899999999998542 344555554321 2357899999999999999999964
No 100
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.97 E-value=3.7e-30 Score=175.50 Aligned_cols=151 Identities=23% Similarity=0.340 Sum_probs=121.8
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|||||||+++|.+..+.. +.+|++..+.. ++...+.+.+||+||+..+...+..+++++|++++|+|+++++++
T Consensus 8 ~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~~----~~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~~~s~ 82 (169)
T cd04158 8 DGAGKTTILFKLKQDEFMQ-PIPTIGFNVET----VEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDRV 82 (169)
T ss_pred CCCCHHHHHHHHhcCCCCC-cCCcCceeEEE----EEECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeCCcHHHH
Confidence 6899999999999887654 66887766532 233457889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHHHHcC------CeEEEEecCCCCCHHHHHHHHHHHH
Q 030225 81 ERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENG------LSFLETSAKSAHNVNELFYEIAKRL 153 (181)
Q Consensus 81 ~~~~~~~~~~~~~~-~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~------~~~~~~Sa~~~~gi~~~~~~l~~~~ 153 (181)
+++..|+..+.... ..+.|+++++||+|+.+ .+..++...++...+ +.++++||++|.|++++|+||++.+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~l~~~~ 160 (169)
T cd04158 83 SEAHSELAKLLTEKELRDALLLIFANKQDVAG--ALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQL 160 (169)
T ss_pred HHHHHHHHHHhcChhhCCCCEEEEEeCcCccc--CCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHHHHHHHHH
Confidence 99999998887542 24689999999999854 345565655553222 3688999999999999999999887
Q ss_pred HhhCC
Q 030225 154 AEVNP 158 (181)
Q Consensus 154 ~~~~~ 158 (181)
.+..+
T Consensus 161 ~~~~~ 165 (169)
T cd04158 161 VAAGV 165 (169)
T ss_pred hhccc
Confidence 77644
No 101
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.97 E-value=2.2e-29 Score=172.51 Aligned_cols=151 Identities=33% Similarity=0.545 Sum_probs=127.5
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|||||||+++|.++.+...+.++++..+. ..+.+++..+.+.+||++|++.+..++..++.++|++++|||++++++|
T Consensus 10 ~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~~~~~~s~ 88 (175)
T cd01870 10 GACGKTCLLIVFSKDQFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSL 88 (175)
T ss_pred CCCCHHHHHHHHhcCCCCCCCCCccccceE-EEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEEECCCHHHH
Confidence 689999999999999998888888876654 3557788889999999999999998888899999999999999999999
Q ss_pred HHHH-HHHHHHHHhCCCCceEEEEEeCCCCccc------------ccCCHHHHHHHHHHcCC-eEEEEecCCCCCHHHHH
Q 030225 81 ERAK-KWVQELQRQGNPNLIMFLVANKVDLEEK------------RKVKNEEGELYAQENGL-SFLETSAKSAHNVNELF 146 (181)
Q Consensus 81 ~~~~-~~~~~~~~~~~~~~p~ivi~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~~~ 146 (181)
+.+. .|+..+... ..+.|+++++||+|+... ..+...++..++...+. .++++||++|.|++++|
T Consensus 89 ~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf 167 (175)
T cd01870 89 ENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKTKEGVREVF 167 (175)
T ss_pred HHHHHHHHHHHHhh-CCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEeccccCcCHHHHH
Confidence 8885 577777654 357899999999998542 23445677777777764 89999999999999999
Q ss_pred HHHHHHH
Q 030225 147 YEIAKRL 153 (181)
Q Consensus 147 ~~l~~~~ 153 (181)
++|++.+
T Consensus 168 ~~l~~~~ 174 (175)
T cd01870 168 EMATRAA 174 (175)
T ss_pred HHHHHHh
Confidence 9998764
No 102
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.97 E-value=1.3e-29 Score=176.86 Aligned_cols=157 Identities=25% Similarity=0.379 Sum_probs=129.8
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|||||||+++|+.+.+...+.++++ +.....+.+.+..+.+.+||+||+..+..++..++.++|++|+|||++++.++
T Consensus 8 ~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~~~~~s~ 86 (198)
T cd04147 8 AGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAVDDPESF 86 (198)
T ss_pred CCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEECCCHHHH
Confidence 69999999999999998887777765 34455677788888999999999999998889999999999999999999999
Q ss_pred HHHHHHHHHHHHhCC-CCceEEEEEeCCCCcc-cccCCHHHHHHHHH-HcCCeEEEEecCCCCCHHHHHHHHHHHHHhhC
Q 030225 81 ERAKKWVQELQRQGN-PNLIMFLVANKVDLEE-KRKVKNEEGELYAQ-ENGLSFLETSAKSAHNVNELFYEIAKRLAEVN 157 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~-~~~p~ivi~nK~D~~~-~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~ 157 (181)
+.+..|+..+..... .++|+++++||+|+.. ...+...+...... ..+.+++++||++|.|++++|++|++.+....
T Consensus 87 ~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~ 166 (198)
T cd04147 87 EEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKELLRQANLPY 166 (198)
T ss_pred HHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHHHHhhccc
Confidence 999999988877543 5799999999999865 34444444444333 45678999999999999999999999876543
Q ss_pred C
Q 030225 158 P 158 (181)
Q Consensus 158 ~ 158 (181)
.
T Consensus 167 ~ 167 (198)
T cd04147 167 N 167 (198)
T ss_pred c
Confidence 3
No 103
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.97 E-value=5.6e-30 Score=176.24 Aligned_cols=149 Identities=20% Similarity=0.290 Sum_probs=116.5
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|||||||+++|..+.+.. +.||+|.++. .+ +...+.+.+||+||++.+..+|..+++++|++|+|||+++++++
T Consensus 26 ~~~GKTsl~~~l~~~~~~~-~~pt~g~~~~--~~--~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V~D~s~~~s~ 100 (181)
T PLN00223 26 DAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TV--EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRV 100 (181)
T ss_pred CCCCHHHHHHHHccCCCcc-ccCCcceeEE--EE--EECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCcHHHH
Confidence 6899999999999877764 5688886553 22 33457899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh-CCCCceEEEEEeCCCCcccccCCHHHHHHHHHHc-----CCeEEEEecCCCCCHHHHHHHHHHHHH
Q 030225 81 ERAKKWVQELQRQ-GNPNLIMFLVANKVDLEEKRKVKNEEGELYAQEN-----GLSFLETSAKSAHNVNELFYEIAKRLA 154 (181)
Q Consensus 81 ~~~~~~~~~~~~~-~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~-----~~~~~~~Sa~~~~gi~~~~~~l~~~~~ 154 (181)
.++..++..+... ..++.|+++++||+|+.+.. ..++....+.-. .+.++++||++|+|+.++|+||.+.+.
T Consensus 101 ~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~~ 178 (181)
T PLN00223 101 VEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
T ss_pred HHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCC--CHHHHHHHhCccccCCCceEEEeccCCCCCCHHHHHHHHHHHHh
Confidence 9988887777542 23578999999999985532 233333322111 124668999999999999999998876
Q ss_pred hh
Q 030225 155 EV 156 (181)
Q Consensus 155 ~~ 156 (181)
++
T Consensus 179 ~~ 180 (181)
T PLN00223 179 NK 180 (181)
T ss_pred hc
Confidence 54
No 104
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.97 E-value=2.5e-30 Score=177.23 Aligned_cols=146 Identities=23% Similarity=0.343 Sum_probs=114.7
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|||||||+++|..+.+. .+.||++.++.. ... ..+++.+||+||+..+..++..+++++|++|+|||+++++++
T Consensus 22 ~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~~--~~~--~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~D~t~~~s~ 96 (175)
T smart00177 22 DAAGKTTILYKLKLGESV-TTIPTIGFNVET--VTY--KNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVDSNDRDRI 96 (175)
T ss_pred CCCCHHHHHHHHhcCCCC-CcCCccccceEE--EEE--CCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECCCHHHH
Confidence 699999999999877774 466888866543 223 457899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh-CCCCceEEEEEeCCCCcccccCCHHHHHHHH-----HHcCCeEEEEecCCCCCHHHHHHHHHHHH
Q 030225 81 ERAKKWVQELQRQ-GNPNLIMFLVANKVDLEEKRKVKNEEGELYA-----QENGLSFLETSAKSAHNVNELFYEIAKRL 153 (181)
Q Consensus 81 ~~~~~~~~~~~~~-~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~ 153 (181)
++...|+..+... ...+.|+++++||+|+.+.. ..++..... +...+.++++||++|+|+.++|+||.+.+
T Consensus 97 ~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~ 173 (175)
T smart00177 97 DEAREELHRMLNEDELRDAVILVFANKQDLPDAM--KAAEITEKLGLHSIRDRNWYIQPTCATSGDGLYEGLTWLSNNL 173 (175)
T ss_pred HHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCC--CHHHHHHHhCccccCCCcEEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 9998888887653 23578999999999985432 222322221 12234577899999999999999998764
No 105
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.97 E-value=6.5e-30 Score=176.37 Aligned_cols=156 Identities=24% Similarity=0.304 Sum_probs=123.8
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEE-CCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSL-NEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDS 79 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s 79 (181)
+|||||||++++..+.+... .+|+|.+.....+.. ++..+.+.+||++|++.+..++..+++++|++++|+|++++++
T Consensus 12 ~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~ 90 (183)
T cd04152 12 DSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVER 90 (183)
T ss_pred CCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEEEEECCCHHH
Confidence 69999999999998887654 578777665555544 4466889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHh-CCCCceEEEEEeCCCCcccccCCHHHHHHHHH--H----cCCeEEEEecCCCCCHHHHHHHHHHH
Q 030225 80 FERAKKWVQELQRQ-GNPNLIMFLVANKVDLEEKRKVKNEEGELYAQ--E----NGLSFLETSAKSAHNVNELFYEIAKR 152 (181)
Q Consensus 80 ~~~~~~~~~~~~~~-~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~--~----~~~~~~~~Sa~~~~gi~~~~~~l~~~ 152 (181)
++.+..|+..+... ...+.|+++++||+|+.+. ...++...+.. . .+++++++||++++|+++++++|.+.
T Consensus 91 ~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~l~~~ 168 (183)
T cd04152 91 MEEAKTELHKITRFSENQGVPVLVLANKQDLPNA--LSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQEGLEKLYEM 168 (183)
T ss_pred HHHHHHHHHHHHhhhhcCCCcEEEEEECcCcccc--CCHHHHHHHhCccccCCCCceEEEEeecccCCCHHHHHHHHHHH
Confidence 99988888877653 2357899999999998542 33333333332 1 12468999999999999999999998
Q ss_pred HHhhCCC
Q 030225 153 LAEVNPS 159 (181)
Q Consensus 153 ~~~~~~~ 159 (181)
+.+.++.
T Consensus 169 l~~~~~~ 175 (183)
T cd04152 169 ILKRRKM 175 (183)
T ss_pred HHHHHhh
Confidence 8766553
No 106
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.97 E-value=2.3e-30 Score=174.79 Aligned_cols=144 Identities=20% Similarity=0.335 Sum_probs=112.4
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|||||||+++|..+.+.. +.||+|..+. .+.. ..+.+.+||+||++.+..++..+++++|++|||||++++.++
T Consensus 9 ~~~GKTsli~~l~~~~~~~-~~pt~g~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~ 83 (159)
T cd04150 9 DAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERI 83 (159)
T ss_pred CCCCHHHHHHHHhcCCCcc-cCCCCCcceE--EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHH
Confidence 6899999999998887764 6788886553 2223 457889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh-CCCCceEEEEEeCCCCcccccCCHHHH-HHHH----HHcCCeEEEEecCCCCCHHHHHHHHHH
Q 030225 81 ERAKKWVQELQRQ-GNPNLIMFLVANKVDLEEKRKVKNEEG-ELYA----QENGLSFLETSAKSAHNVNELFYEIAK 151 (181)
Q Consensus 81 ~~~~~~~~~~~~~-~~~~~p~ivi~nK~D~~~~~~~~~~~~-~~~~----~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 151 (181)
+++..|+..+... ...++|+++++||+|+.+.. ..++. ..+. ..+++.++++||++|+|++++|+||.+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~~~l~~ 158 (159)
T cd04150 84 GEAREELQRMLNEDELRDAVLLVFANKQDLPNAM--SAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSN 158 (159)
T ss_pred HHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCC--CHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHHHHHhc
Confidence 9998888777543 23568999999999985422 22222 2221 122346789999999999999999964
No 107
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.97 E-value=7.3e-30 Score=175.86 Aligned_cols=150 Identities=19% Similarity=0.316 Sum_probs=116.6
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|||||||++++..+.+.. +.||++.++.. + +...+.+.+||+||++.++.++..+++++|++|+|+|+++++++
T Consensus 26 ~~vGKTsli~~~~~~~~~~-~~~T~~~~~~~--~--~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v~D~t~~~s~ 100 (182)
T PTZ00133 26 DAAGKTTILYKLKLGEVVT-TIPTIGFNVET--V--EYKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDSNDRERI 100 (182)
T ss_pred CCCCHHHHHHHHhcCCccc-cCCccccceEE--E--EECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHH
Confidence 6899999999998877765 56888866532 2 23557899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh-CCCCceEEEEEeCCCCcccccCCHHHHHHHH-----HHcCCeEEEEecCCCCCHHHHHHHHHHHHH
Q 030225 81 ERAKKWVQELQRQ-GNPNLIMFLVANKVDLEEKRKVKNEEGELYA-----QENGLSFLETSAKSAHNVNELFYEIAKRLA 154 (181)
Q Consensus 81 ~~~~~~~~~~~~~-~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~ 154 (181)
++...++..+... ...++|+++++||.|+.+. ...++..... ....+.++++||++|.|++++|+||.+.+.
T Consensus 101 ~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~e~~~~l~~~i~ 178 (182)
T PTZ00133 101 GDAREELERMLSEDELRDAVLLVFANKQDLPNA--MSTTEVTEKLGLHSVRQRNWYIQGCCATTAQGLYEGLDWLSANIK 178 (182)
T ss_pred HHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCC--CCHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHHHHHHHHHHHHH
Confidence 9988887777542 2356899999999998542 2223322221 112245779999999999999999998877
Q ss_pred hhC
Q 030225 155 EVN 157 (181)
Q Consensus 155 ~~~ 157 (181)
++.
T Consensus 179 ~~~ 181 (182)
T PTZ00133 179 KSM 181 (182)
T ss_pred Hhc
Confidence 653
No 108
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.97 E-value=1.2e-29 Score=172.01 Aligned_cols=156 Identities=29% Similarity=0.515 Sum_probs=140.3
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEE-CCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSL-NEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDS 79 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s 79 (181)
.++|||+|+..+..+.|+..|.||+.. -+...+.+ ++..+.+.+|||.|+++|..+++..+.++|++++||++.++.|
T Consensus 13 ga~GKT~ll~~~t~~~fp~~yvPTVFd-nys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl~cfsv~~p~S 91 (198)
T KOG0393|consen 13 GAVGKTCLLISYTTNAFPEEYVPTVFD-NYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFLLCFSVVSPES 91 (198)
T ss_pred CCcCceEEEEEeccCcCcccccCeEEc-cceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEEEEEEcCChhh
Confidence 479999999999999999999999984 44556677 5999999999999999999999899999999999999999999
Q ss_pred HHHH-HHHHHHHHHhCCCCceEEEEEeCCCCcc------------cccCCHHHHHHHHHHcC-CeEEEEecCCCCCHHHH
Q 030225 80 FERA-KKWVQELQRQGNPNLIMFLVANKVDLEE------------KRKVKNEEGELYAQENG-LSFLETSAKSAHNVNEL 145 (181)
Q Consensus 80 ~~~~-~~~~~~~~~~~~~~~p~ivi~nK~D~~~------------~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~~ 145 (181)
|+++ .+|+.++..++ ++.|+++||+|.||.+ ...+..+++...+++.| ..|+||||++..|++++
T Consensus 92 ~~nv~~kW~pEi~~~c-p~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~EcSa~tq~~v~~v 170 (198)
T KOG0393|consen 92 FENVKSKWIPEIKHHC-PNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLECSALTQKGVKEV 170 (198)
T ss_pred HHHHHhhhhHHHHhhC-CCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeeehhhhhCCcHHH
Confidence 9995 78999999887 8999999999999963 24688889999999999 67999999999999999
Q ss_pred HHHHHHHHHhhCC
Q 030225 146 FYEIAKRLAEVNP 158 (181)
Q Consensus 146 ~~~l~~~~~~~~~ 158 (181)
|+..+..+....+
T Consensus 171 F~~a~~~~l~~~~ 183 (198)
T KOG0393|consen 171 FDEAIRAALRPPQ 183 (198)
T ss_pred HHHHHHHHhcccc
Confidence 9999998887654
No 109
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.97 E-value=2.5e-28 Score=166.60 Aligned_cols=149 Identities=32% Similarity=0.600 Sum_probs=125.3
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|||||||+++|.++.+...+.++.... .......++..+.+.+||+||++.+......+++.+|++++|||++++.++
T Consensus 9 ~~~GKSsli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~ 87 (171)
T cd00157 9 GAVGKTCLLISYTTGKFPTEYVPTVFDN-YSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFSVDSPSSF 87 (171)
T ss_pred CCCCHHHHHHHHHhCCCCCCCCCceeee-eEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEEECCCHHHH
Confidence 6999999999999999877777776543 345567788889999999999998888888889999999999999999998
Q ss_pred HHHH-HHHHHHHHhCCCCceEEEEEeCCCCcccc-----------cCCHHHHHHHHHHcCC-eEEEEecCCCCCHHHHHH
Q 030225 81 ERAK-KWVQELQRQGNPNLIMFLVANKVDLEEKR-----------KVKNEEGELYAQENGL-SFLETSAKSAHNVNELFY 147 (181)
Q Consensus 81 ~~~~-~~~~~~~~~~~~~~p~ivi~nK~D~~~~~-----------~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~~~~ 147 (181)
.... .|+..+.... .+.|+++++||+|+.+.. .+..+++..+...+++ +++++||++|.|++++|+
T Consensus 88 ~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 166 (171)
T cd00157 88 ENVKTKWIPEIRHYC-PNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQEGVKEVFE 166 (171)
T ss_pred HHHHHHHHHHHHhhC-CCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCCCCHHHHHH
Confidence 8864 5777776654 589999999999986543 3356677788888887 999999999999999999
Q ss_pred HHHH
Q 030225 148 EIAK 151 (181)
Q Consensus 148 ~l~~ 151 (181)
+|++
T Consensus 167 ~i~~ 170 (171)
T cd00157 167 EAIR 170 (171)
T ss_pred HHhh
Confidence 9875
No 110
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.96 E-value=6.5e-28 Score=170.41 Aligned_cols=154 Identities=32% Similarity=0.533 Sum_probs=135.3
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|||||||+++++.+.+...+.+|++.++....+..+++.+.+.+||++|+..+..++..++.+++++++|||+++..++
T Consensus 18 ~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~ 97 (215)
T PTZ00132 18 GGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQCAIIMFDVTSRITY 97 (215)
T ss_pred CCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCEEEEEEECcCHHHH
Confidence 69999999999999999888999999999888888889999999999999999998999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHhhC
Q 030225 81 ERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVN 157 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~ 157 (181)
..+..|+..+.... .+.|+++++||+|+.+ ..... +...++...++.++++||++|.|++++|.+|++.+....
T Consensus 98 ~~~~~~~~~i~~~~-~~~~i~lv~nK~Dl~~-~~~~~-~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~ia~~l~~~p 171 (215)
T PTZ00132 98 KNVPNWHRDIVRVC-ENIPIVLVGNKVDVKD-RQVKA-RQITFHRKKNLQYYDISAKSNYNFEKPFLWLARRLTNDP 171 (215)
T ss_pred HHHHHHHHHHHHhC-CCCCEEEEEECccCcc-ccCCH-HHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHhhcc
Confidence 99999999987654 5789999999999854 23333 334567778899999999999999999999999887653
No 111
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.96 E-value=8.9e-29 Score=169.29 Aligned_cols=144 Identities=20% Similarity=0.273 Sum_probs=114.4
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|||||||+++|.+..+ ..+.+|+|..+. .+..+ .+++.+||+||++.++.++..+++++|++++|||++++.++
T Consensus 23 ~~~GKTsL~~~l~~~~~-~~~~~t~g~~~~--~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 97 (173)
T cd04154 23 DNAGKTTILKKLLGEDI-DTISPTLGFQIK--TLEYE--GYKLNIWDVGGQKTLRPYWRNYFESTDALIWVVDSSDRLRL 97 (173)
T ss_pred CCCCHHHHHHHHccCCC-CCcCCccccceE--EEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCCHHHH
Confidence 69999999999998754 445677775443 33344 47889999999999888999999999999999999999999
Q ss_pred HHHHHHHHHHHHh-CCCCceEEEEEeCCCCcccccCCHHHHHHHHH-----HcCCeEEEEecCCCCCHHHHHHHHHH
Q 030225 81 ERAKKWVQELQRQ-GNPNLIMFLVANKVDLEEKRKVKNEEGELYAQ-----ENGLSFLETSAKSAHNVNELFYEIAK 151 (181)
Q Consensus 81 ~~~~~~~~~~~~~-~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~~~~~l~~ 151 (181)
.+...|+..+... ...+.|+++++||+|+.+.. ..++...+++ ..+++++++||++|.|++++|++|++
T Consensus 98 ~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~ 172 (173)
T cd04154 98 DDCKRELKELLQEERLAGATLLILANKQDLPGAL--SEEEIREALELDKISSHHWRIQPCSAVTGEGLLQGIDWLVD 172 (173)
T ss_pred HHHHHHHHHHHhChhhcCCCEEEEEECcccccCC--CHHHHHHHhCccccCCCceEEEeccCCCCcCHHHHHHHHhc
Confidence 9988888877543 23679999999999986532 3344444432 24578999999999999999999864
No 112
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.96 E-value=4.1e-29 Score=170.03 Aligned_cols=146 Identities=23% Similarity=0.188 Sum_probs=114.5
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|||||||+++|.+. +...+.||+|.... .+.. ..+.+.+||+||+..+..++..+++++|++|+|||++++.++
T Consensus 8 ~~~GKTsl~~~l~~~-~~~~~~~t~g~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~~s~ 82 (167)
T cd04161 8 DNAGKTTLVSALQGE-IPKKVAPTVGFTPT--KLRL--DKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDDDRV 82 (167)
T ss_pred CCCCHHHHHHHHhCC-CCccccCcccceEE--EEEE--CCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEECCchhHH
Confidence 689999999999976 66677788886533 3333 457889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHH-H---HHHHHHHc--CCeEEEEecCCC------CCHHHHHH
Q 030225 81 ERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNE-E---GELYAQEN--GLSFLETSAKSA------HNVNELFY 147 (181)
Q Consensus 81 ~~~~~~~~~~~~~~-~~~~p~ivi~nK~D~~~~~~~~~~-~---~~~~~~~~--~~~~~~~Sa~~~------~gi~~~~~ 147 (181)
+++..|+..+.... ..++|+++++||+|+.+.+..... + ...++++. .+.++++||++| .|+.+.|+
T Consensus 83 ~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~g~~~~~~ 162 (167)
T cd04161 83 QEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDPSIVEGLR 162 (167)
T ss_pred HHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCccccCHHHHHH
Confidence 99999999887643 257899999999998654321111 1 11223222 256788999998 89999999
Q ss_pred HHHH
Q 030225 148 EIAK 151 (181)
Q Consensus 148 ~l~~ 151 (181)
||..
T Consensus 163 wl~~ 166 (167)
T cd04161 163 WLLA 166 (167)
T ss_pred HHhc
Confidence 9975
No 113
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.96 E-value=6.2e-29 Score=168.15 Aligned_cols=145 Identities=17% Similarity=0.240 Sum_probs=112.9
Q ss_pred CCCchhHHHHHHhhCCC-CCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhH
Q 030225 1 MGTGKTSLVLRFVKGQF-FDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDS 79 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s 79 (181)
||||||||+++|.+... ...+.||+|..+.. +....+++.+||+||+..+..++..+++++|++|+|+|++++.+
T Consensus 8 ~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~----~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~ 83 (162)
T cd04157 8 DNSGKTTIINQLKPENAQSQIIVPTVGFNVES----FEKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSDRLR 83 (162)
T ss_pred CCCCHHHHHHHHcccCCCcceecCccccceEE----EEECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEeCCcHHH
Confidence 69999999999998763 55677888755432 22346788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhC---CCCceEEEEEeCCCCcccccCCHHHHHHHHH-----HcCCeEEEEecCCCCCHHHHHHHHHH
Q 030225 80 FERAKKWVQELQRQG---NPNLIMFLVANKVDLEEKRKVKNEEGELYAQ-----ENGLSFLETSAKSAHNVNELFYEIAK 151 (181)
Q Consensus 80 ~~~~~~~~~~~~~~~---~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~~~~~l~~ 151 (181)
+..+..|+..+.... ..+.|+++++||+|+.+.. ...+...... ...+.++++||++|+|++++|+||.+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~--~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~~~~~l~~ 161 (162)
T cd04157 84 LVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDAL--TAVKITQLLGLENIKDKPWHIFASNALTGEGLDEGVQWLQA 161 (162)
T ss_pred HHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCC--CHHHHHHHhCCccccCceEEEEEeeCCCCCchHHHHHHHhc
Confidence 998888888876532 2579999999999986432 2222222111 12346899999999999999999965
No 114
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.96 E-value=4.7e-28 Score=168.52 Aligned_cols=140 Identities=19% Similarity=0.346 Sum_probs=118.8
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEEC-----CeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECC
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLN-----EVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDIT 75 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~-----~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~ 75 (181)
+|||||||+++|.++.+...+.+|+|.++....+.++ +..+.+.+||++|++.|..++..+++++|++|+|||++
T Consensus 9 ~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~iIlVyDvt 88 (202)
T cd04102 9 SGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNGIILVHDLT 88 (202)
T ss_pred CCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCEEEEEEECc
Confidence 5899999999999999999899999988777766664 56789999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHHHHhC-------------------CCCceEEEEEeCCCCcccccCCHHH----HHHHHHHcCCeEE
Q 030225 76 SMDSFERAKKWVQELQRQG-------------------NPNLIMFLVANKVDLEEKRKVKNEE----GELYAQENGLSFL 132 (181)
Q Consensus 76 ~~~s~~~~~~~~~~~~~~~-------------------~~~~p~ivi~nK~D~~~~~~~~~~~----~~~~~~~~~~~~~ 132 (181)
++++|+.+..|+..+.... ..+.|+++||||.|+.+.+.+.... ...++.+.+++.+
T Consensus 89 n~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia~~~~~~~i 168 (202)
T cd04102 89 NRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFVAEQGNAEEI 168 (202)
T ss_pred ChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhhHHHhcCCceE
Confidence 9999999999999997631 2468999999999997655544443 3456777899998
Q ss_pred EEecCCCC
Q 030225 133 ETSAKSAH 140 (181)
Q Consensus 133 ~~Sa~~~~ 140 (181)
+.++.++.
T Consensus 169 ~~~c~~~~ 176 (202)
T cd04102 169 NLNCTNGR 176 (202)
T ss_pred EEecCCcc
Confidence 88888653
No 115
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.96 E-value=1e-27 Score=162.95 Aligned_cols=152 Identities=26% Similarity=0.356 Sum_probs=118.0
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|||||||+++|.++.+...+.++. ..+ .....+++..+++.+||+||...+...+..++..+|++++|||++++.++
T Consensus 9 ~~vGKTsl~~~l~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~ 86 (166)
T cd01893 9 EGVGKSSLIMSLVSEEFPENVPRVL-PEI-TIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYSVDRPSTL 86 (166)
T ss_pred CCCCHHHHHHHHHhCcCCccCCCcc-cce-EeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEECCCHHHH
Confidence 6899999999999999876654332 222 33445667788999999999988877777888999999999999999999
Q ss_pred HHHH-HHHHHHHHhCCCCceEEEEEeCCCCcccccC--CHHHHHHHHHHcC--CeEEEEecCCCCCHHHHHHHHHHHHHh
Q 030225 81 ERAK-KWVQELQRQGNPNLIMFLVANKVDLEEKRKV--KNEEGELYAQENG--LSFLETSAKSAHNVNELFYEIAKRLAE 155 (181)
Q Consensus 81 ~~~~-~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~~~~~l~~~~~~ 155 (181)
+.+. .|+..+.... .+.|+++++||+|+.+.... ..++...++..++ .+++++||+++.|++++|+.+...+..
T Consensus 87 ~~~~~~~~~~i~~~~-~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~~~~~~~~ 165 (166)
T cd01893 87 ERIRTKWLPLIRRLG-VKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFYYAQKAVLH 165 (166)
T ss_pred HHHHHHHHHHHHHhC-CCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHHHHHHHhcC
Confidence 9975 6877776654 58999999999999654432 1233333333332 379999999999999999999887653
No 116
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.96 E-value=6e-28 Score=165.33 Aligned_cols=144 Identities=23% Similarity=0.342 Sum_probs=113.1
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
||||||||+++|..+.+.. +.++++.++.. +.. ..+++.+||+||+..+...+..+++++|++++|+|+++++++
T Consensus 24 ~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~~--~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~D~s~~~~~ 98 (174)
T cd04153 24 DNAGKTTILYQFLLGEVVH-TSPTIGSNVEE--IVY--KNIRFLMWDIGGQESLRSSWNTYYTNTDAVILVIDSTDRERL 98 (174)
T ss_pred CCCCHHHHHHHHccCCCCC-cCCccccceEE--EEE--CCeEEEEEECCCCHHHHHHHHHHhhcCCEEEEEEECCCHHHH
Confidence 6999999999999888765 45777765532 233 357889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHH-HH----HHcCCeEEEEecCCCCCHHHHHHHHHH
Q 030225 81 ERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGEL-YA----QENGLSFLETSAKSAHNVNELFYEIAK 151 (181)
Q Consensus 81 ~~~~~~~~~~~~~~-~~~~p~ivi~nK~D~~~~~~~~~~~~~~-~~----~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 151 (181)
.....++..+.... ..+.|+++++||+|+.+. ...++... +. +..+++++++||++|+|++++|+||.+
T Consensus 99 ~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~--~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e~~~~l~~ 173 (174)
T cd04153 99 PLTKEELYKMLAHEDLRKAVLLVLANKQDLKGA--MTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPEGLDWIAS 173 (174)
T ss_pred HHHHHHHHHHHhchhhcCCCEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEecccCCCCCHHHHHHHHhc
Confidence 88888777775532 357899999999998542 22333222 21 234567999999999999999999964
No 117
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.96 E-value=4.5e-28 Score=163.70 Aligned_cols=145 Identities=21% Similarity=0.330 Sum_probs=113.1
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
||||||||+++|.+..+.. ..+|++.++.. +.. ...+.+.+||+||+..+...+..++.++|++++|+|++++.++
T Consensus 8 ~~~GKTsl~~~~~~~~~~~-~~~t~~~~~~~--~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~~~~ 83 (160)
T cd04156 8 DSAGKSTLLYKLKHAELVT-TIPTVGFNVEM--LQL-EKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDEARL 83 (160)
T ss_pred CCCCHHHHHHHHhcCCccc-ccCccCcceEE--EEe-CCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCcHHHH
Confidence 6999999999999988765 45777755433 333 2457899999999999998899999999999999999999999
Q ss_pred HHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHH------HHHcCCeEEEEecCCCCCHHHHHHHHHH
Q 030225 81 ERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELY------AQENGLSFLETSAKSAHNVNELFYEIAK 151 (181)
Q Consensus 81 ~~~~~~~~~~~~~~-~~~~p~ivi~nK~D~~~~~~~~~~~~~~~------~~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 151 (181)
..+..|+..+.... ..+.|+++++||+|+.... ...+.... ....+++++++||++|+|++++|++|.+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~i~~ 159 (160)
T cd04156 84 DESQKELKHILKNEHIKGVPVVLLANKQDLPGAL--TAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRKLAS 159 (160)
T ss_pred HHHHHHHHHHHhchhhcCCCEEEEEECcccccCc--CHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHHHHHhc
Confidence 99888888876532 2579999999999985321 22222221 2223457899999999999999999864
No 118
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.96 E-value=1.8e-27 Score=162.95 Aligned_cols=146 Identities=27% Similarity=0.433 Sum_probs=116.2
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|||||||++++..+.... ..||.|... ..+.++ ++.+.+||.+|+..++..|+.|+.++|++|||+|.+|.+.+
T Consensus 23 ~~sGKTtll~~l~~~~~~~-~~pT~g~~~--~~i~~~--~~~~~~~d~gG~~~~~~~w~~y~~~~~~iIfVvDssd~~~l 97 (175)
T PF00025_consen 23 DGSGKTTLLNRLKNGEISE-TIPTIGFNI--EEIKYK--GYSLTIWDLGGQESFRPLWKSYFQNADGIIFVVDSSDPERL 97 (175)
T ss_dssp TTSSHHHHHHHHHSSSEEE-EEEESSEEE--EEEEET--TEEEEEEEESSSGGGGGGGGGGHTTESEEEEEEETTGGGGH
T ss_pred CccchHHHHHHhhhccccc-cCccccccc--ceeeeC--cEEEEEEeccccccccccceeeccccceeEEEEecccceee
Confidence 5899999999999776544 567877554 334444 45788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh-CCCCceEEEEEeCCCCcccccCCHHHHHHHHH------HcCCeEEEEecCCCCCHHHHHHHHHHHH
Q 030225 81 ERAKKWVQELQRQ-GNPNLIMFLVANKVDLEEKRKVKNEEGELYAQ------ENGLSFLETSAKSAHNVNELFYEIAKRL 153 (181)
Q Consensus 81 ~~~~~~~~~~~~~-~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~gi~~~~~~l~~~~ 153 (181)
.+....+..+... ...+.|+++++||+|+.+. ...++...... ...+.++.+||.+|+|+.+.++||.+++
T Consensus 98 ~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~--~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~Gv~e~l~WL~~~~ 175 (175)
T PF00025_consen 98 QEAKEELKELLNDPELKDIPILILANKQDLPDA--MSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEGVDEGLEWLIEQI 175 (175)
T ss_dssp HHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTS--STHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred cccccchhhhcchhhcccceEEEEeccccccCc--chhhHHHhhhhhhhcccCCceEEEeeeccCCcCHHHHHHHHHhcC
Confidence 9998888887664 2367999999999998553 33344443222 2345689999999999999999999865
No 119
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.96 E-value=3.1e-27 Score=153.08 Aligned_cols=151 Identities=21% Similarity=0.251 Sum_probs=120.7
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
.||||||++++|.+.. .....||.|..+.+.. ...+++++||++|+...+..|++||..+|++|+|+|.+|+..+
T Consensus 25 dNsGKTti~~kl~~~~-~~~i~pt~gf~Iktl~----~~~~~L~iwDvGGq~~lr~~W~nYfestdglIwvvDssD~~r~ 99 (185)
T KOG0073|consen 25 DNSGKTTIVKKLLGED-TDTISPTLGFQIKTLE----YKGYTLNIWDVGGQKTLRSYWKNYFESTDGLIWVVDSSDRMRM 99 (185)
T ss_pred CCCCchhHHHHhcCCC-ccccCCccceeeEEEE----ecceEEEEEEcCCcchhHHHHHHhhhccCeEEEEEECchHHHH
Confidence 4899999999999877 4556688886554433 3557899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH-hCCCCceEEEEEeCCCCccccc---CCHH-HHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHh
Q 030225 81 ERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRK---VKNE-EGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAE 155 (181)
Q Consensus 81 ~~~~~~~~~~~~-~~~~~~p~ivi~nK~D~~~~~~---~~~~-~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~ 155 (181)
++....+..+.. ....+.|+++++||.|+...-. +.+. ....+++...++++.|||.+|+++.+.++||++.+.+
T Consensus 100 ~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l~~gidWL~~~l~~ 179 (185)
T KOG0073|consen 100 QECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCSAVTGEDLLEGIDWLCDDLMS 179 (185)
T ss_pred HHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEeccccccHHHHHHHHHHHHHH
Confidence 988777777654 2235689999999999864221 1111 1234456678999999999999999999999998877
Q ss_pred h
Q 030225 156 V 156 (181)
Q Consensus 156 ~ 156 (181)
+
T Consensus 180 r 180 (185)
T KOG0073|consen 180 R 180 (185)
T ss_pred H
Confidence 4
No 120
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.95 E-value=2.5e-27 Score=161.13 Aligned_cols=145 Identities=25% Similarity=0.296 Sum_probs=111.5
Q ss_pred CCCchhHHHHHHhhCCC------CCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEEC
Q 030225 1 MGTGKTSLVLRFVKGQF------FDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDI 74 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~------~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~ 74 (181)
+|||||||+++|.+... ...+.+|++..+.. +.++ ...+.+||+||+..+..++..+++.+|++++|+|+
T Consensus 8 ~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~--~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~vvd~ 83 (167)
T cd04160 8 DNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGT--IEVG--NARLKFWDLGGQESLRSLWDKYYAECHAIIYVIDS 83 (167)
T ss_pred CCCCHHHHHHHHhhhcccccCCcccccCCccccceEE--EEEC--CEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEEC
Confidence 69999999999986432 22344566655432 3333 56889999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHHHH-------cCCeEEEEecCCCCCHHHHH
Q 030225 75 TSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQE-------NGLSFLETSAKSAHNVNELF 146 (181)
Q Consensus 75 ~~~~s~~~~~~~~~~~~~~~-~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~~~gi~~~~ 146 (181)
++++++.....|+..+.... ..+.|+++++||+|+... ....+...+... .+++++++||++|+|+++++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~ 161 (167)
T cd04160 84 TDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDA--LSVEEIKEVFQDKAEEIGRRDCLVLPVSALEGTGVREGI 161 (167)
T ss_pred chHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccC--CCHHHHHHHhccccccccCCceEEEEeeCCCCcCHHHHH
Confidence 99999998888888876632 357899999999998543 233344443322 24689999999999999999
Q ss_pred HHHHH
Q 030225 147 YEIAK 151 (181)
Q Consensus 147 ~~l~~ 151 (181)
+||.+
T Consensus 162 ~~l~~ 166 (167)
T cd04160 162 EWLVE 166 (167)
T ss_pred HHHhc
Confidence 99965
No 121
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.95 E-value=7.3e-30 Score=167.74 Aligned_cols=157 Identities=31% Similarity=0.511 Sum_probs=148.6
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
.++||||+|+++|.+-|...|..++|+++....+.+.+..++..+||++|+++|..+..+|++++.+-++||+-+|..||
T Consensus 29 g~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~vLVFSTTDr~SF 108 (246)
T KOG4252|consen 29 GSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASVLVFSTTDRYSF 108 (246)
T ss_pred CccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccceEEEEecccHHHH
Confidence 37999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHhhCC
Q 030225 81 ERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVNP 158 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~~ 158 (181)
+.+..|.+.+.... ..+|.++|-||+|+.+...+...+++.+++..++.++.+|++...|+.++|.+|++.+.+...
T Consensus 109 ea~~~w~~kv~~e~-~~IPtV~vqNKIDlveds~~~~~evE~lak~l~~RlyRtSvked~NV~~vF~YLaeK~~q~~k 185 (246)
T KOG4252|consen 109 EATLEWYNKVQKET-ERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKRLYRTSVKEDFNVMHVFAYLAEKLTQQKK 185 (246)
T ss_pred HHHHHHHHHHHHHh-ccCCeEEeeccchhhHhhhcchHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 99999999998765 689999999999999999999999999999999999999999999999999999998887644
No 122
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.95 E-value=5.8e-28 Score=162.93 Aligned_cols=144 Identities=23% Similarity=0.314 Sum_probs=109.2
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|||||||+++|..+.+.. +.+|++.++. .+ ++..+.+.+||+||+..+..++..+++.+|++++|+|++++.++
T Consensus 8 ~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~ 82 (158)
T cd04151 8 DNAGKTTILYRLQLGEVVT-TIPTIGFNVE--TV--TYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRDRL 82 (158)
T ss_pred CCCCHHHHHHHHccCCCcC-cCCccCcCeE--EE--EECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEECCCHHHH
Confidence 6899999999998877654 4577765543 22 23457889999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHH-hCCCCceEEEEEeCCCCcccccCCHHHHHHHHH-----HcCCeEEEEecCCCCCHHHHHHHHHH
Q 030225 81 ERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQ-----ENGLSFLETSAKSAHNVNELFYEIAK 151 (181)
Q Consensus 81 ~~~~~~~~~~~~-~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~~~~~l~~ 151 (181)
.....++..+.. ....++|+++++||+|+.+.. ...+...... ..+.+++++||+++.|++++|++|++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 157 (158)
T cd04151 83 GTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL--SEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMDWLVN 157 (158)
T ss_pred HHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC--CHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHHHHhc
Confidence 877666665543 223578999999999985432 2222222111 12357999999999999999999964
No 123
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=5.8e-28 Score=160.12 Aligned_cols=150 Identities=23% Similarity=0.323 Sum_probs=122.8
Q ss_pred CCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHHH
Q 030225 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFE 81 (181)
Q Consensus 2 ~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~ 81 (181)
|+||||++++|..++...+ .||+|..+.... ..+++|.+||++|+..++.+|+.|+.+.+++|||+|.+|++.+.
T Consensus 27 ~AGKTTILykLk~~E~vtt-vPTiGfnVE~v~----ykn~~f~vWDvGGq~k~R~lW~~Y~~~t~~lIfVvDS~Dr~Ri~ 101 (181)
T KOG0070|consen 27 AAGKTTILYKLKLGEIVTT-VPTIGFNVETVE----YKNISFTVWDVGGQEKLRPLWKHYFQNTQGLIFVVDSSDRERIE 101 (181)
T ss_pred CCCceeeeEeeccCCcccC-CCccccceeEEE----EcceEEEEEecCCCcccccchhhhccCCcEEEEEEeCCcHHHHH
Confidence 7999999999999888776 799995544433 34889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCC-CCceEEEEEeCCCCcccccC---CHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHhh
Q 030225 82 RAKKWVQELQRQGN-PNLIMFLVANKVDLEEKRKV---KNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEV 156 (181)
Q Consensus 82 ~~~~~~~~~~~~~~-~~~p~ivi~nK~D~~~~~~~---~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~ 156 (181)
+.+..+..+..... ...|+++.+||.|+.+.... .......-+..+...+..++|.+|+|+.+.++||.+.+..+
T Consensus 102 eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL~egl~wl~~~~~~~ 180 (181)
T KOG0070|consen 102 EAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRSRNWHIQSTCAISGEGLYEGLDWLSNNLKKR 180 (181)
T ss_pred HHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhccCCCCcEEeeccccccccHHHHHHHHHHHHhcc
Confidence 99988888877643 68999999999998764432 21222222333456789999999999999999999987654
No 124
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.95 E-value=2.3e-27 Score=159.91 Aligned_cols=144 Identities=22% Similarity=0.309 Sum_probs=113.7
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|||||||++++++... ..+.++++..... +.+. .+.+.+||+||+..+...+..+++++|++++|||+++++++
T Consensus 8 ~~~GKssli~~~~~~~~-~~~~~t~~~~~~~--~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~ 82 (158)
T cd00878 8 DGAGKTTILYKLKLGEV-VTTIPTIGFNVET--VEYK--NVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDRERI 82 (158)
T ss_pred CCCCHHHHHHHHhcCCC-CCCCCCcCcceEE--EEEC--CEEEEEEECCCChhhHHHHHHHhccCCEEEEEEECCCHHHH
Confidence 69999999999998874 4455777755433 3333 46789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHHH-----HcCCeEEEEecCCCCCHHHHHHHHHH
Q 030225 81 ERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQ-----ENGLSFLETSAKSAHNVNELFYEIAK 151 (181)
Q Consensus 81 ~~~~~~~~~~~~~~-~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~~~~~l~~ 151 (181)
.....|+..+.... ..+.|+++++||+|+.... ..++...... ...++++++||++|.|++++|++|..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~~ 157 (158)
T cd00878 83 EEAKEELHKLLNEEELKGVPLLIFANKQDLPGAL--SVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLDWLLQ 157 (158)
T ss_pred HHHHHHHHHHHhCcccCCCcEEEEeeccCCcccc--CHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHHHHhh
Confidence 99988888776632 3678999999999986533 2233333222 23468999999999999999999975
No 125
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.95 E-value=5.8e-27 Score=162.58 Aligned_cols=145 Identities=21% Similarity=0.286 Sum_probs=115.3
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|||||||+++|.+..+. .+.+|.+... ..+.+++ +.+.+||+||+..+...+..+++++|++++|+|+++.+++
T Consensus 28 ~~~GKStLi~~l~~~~~~-~~~~T~~~~~--~~i~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV~D~~~~~s~ 102 (190)
T cd00879 28 DNAGKTTLLHMLKDDRLA-QHVPTLHPTS--EELTIGN--IKFKTFDLGGHEQARRLWKDYFPEVDGIVFLVDAADPERF 102 (190)
T ss_pred CCCCHHHHHHHHhcCCCc-ccCCccCcce--EEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEEEEEEECCcHHHH
Confidence 699999999999988764 4556766543 3334443 5788999999998888889999999999999999999999
Q ss_pred HHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHHHH----------------cCCeEEEEecCCCCCHH
Q 030225 81 ERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQE----------------NGLSFLETSAKSAHNVN 143 (181)
Q Consensus 81 ~~~~~~~~~~~~~~-~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~----------------~~~~~~~~Sa~~~~gi~ 143 (181)
.....|+..+.... ..+.|+++++||+|+.. .+..++...++.. ..+.++++||++++|+.
T Consensus 103 ~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~ 180 (190)
T cd00879 103 QESKEELDSLLSDEELANVPFLILGNKIDLPG--AVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFMCSVVKRQGYG 180 (190)
T ss_pred HHHHHHHHHHHcCccccCCCEEEEEeCCCCCC--CcCHHHHHHHhCcccccccccccccccCceeEEEEEeEecCCCChH
Confidence 88888888876532 25689999999999854 4455566555532 22468999999999999
Q ss_pred HHHHHHHHH
Q 030225 144 ELFYEIAKR 152 (181)
Q Consensus 144 ~~~~~l~~~ 152 (181)
++|+||.+.
T Consensus 181 e~~~~l~~~ 189 (190)
T cd00879 181 EAFRWLSQY 189 (190)
T ss_pred HHHHHHHhh
Confidence 999999864
No 126
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.95 E-value=1.6e-26 Score=159.55 Aligned_cols=145 Identities=18% Similarity=0.215 Sum_probs=112.1
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|||||||+++|.++.+.. +.||.+.... .+.. .++++.+||+||+..++.++..++.++|++++|+|+++++++
T Consensus 26 ~~~GKTsli~~l~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~vvD~~~~~~~ 100 (184)
T smart00178 26 DNAGKTTLLHMLKNDRLAQ-HQPTQHPTSE--ELAI--GNIKFTTFDLGGHQQARRLWKDYFPEVNGIVYLVDAYDKERF 100 (184)
T ss_pred CCCCHHHHHHHHhcCCCcc-cCCccccceE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCcHHHH
Confidence 6999999999999877643 4566554332 2233 346888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh-CCCCceEEEEEeCCCCcccccCCHHHHHHHHHH------------cCCeEEEEecCCCCCHHHHHH
Q 030225 81 ERAKKWVQELQRQ-GNPNLIMFLVANKVDLEEKRKVKNEEGELYAQE------------NGLSFLETSAKSAHNVNELFY 147 (181)
Q Consensus 81 ~~~~~~~~~~~~~-~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~------------~~~~~~~~Sa~~~~gi~~~~~ 147 (181)
.....++..+... ...+.|+++++||+|+.. .+..++......- ....++++||++++|++++++
T Consensus 101 ~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~--~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~~~~ 178 (184)
T smart00178 101 AESKRELDALLSDEELATVPFLILGNKIDAPY--AASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSVVRRMGYGEGFK 178 (184)
T ss_pred HHHHHHHHHHHcChhhcCCCEEEEEeCccccC--CCCHHHHHHHcCCCcccccccccCCceeEEEEeecccCCChHHHHH
Confidence 9988888877653 235789999999999853 3344444433210 124589999999999999999
Q ss_pred HHHHH
Q 030225 148 EIAKR 152 (181)
Q Consensus 148 ~l~~~ 152 (181)
||.+.
T Consensus 179 wl~~~ 183 (184)
T smart00178 179 WLSQY 183 (184)
T ss_pred HHHhh
Confidence 99764
No 127
>PLN00023 GTP-binding protein; Provisional
Probab=99.95 E-value=3.8e-26 Score=166.53 Aligned_cols=129 Identities=25% Similarity=0.461 Sum_probs=111.8
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEEC-------------CeEEEEEEEeCCChhhhhccchhhccCCcE
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLN-------------EVTIKFDIWDTAGQERYHSLAPMYYRGAAA 67 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~-------------~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 67 (181)
+|||||||+++|.++.+...+.+|+|.++....+.++ +..+.+.|||++|++.|..++..+++++|+
T Consensus 30 sGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfrsL~~~yyr~Adg 109 (334)
T PLN00023 30 SGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYKDCRSLFYSQING 109 (334)
T ss_pred CCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhhhhhHHhccCCCE
Confidence 5899999999999999988899999998877766654 246889999999999999999999999999
Q ss_pred EEEEEECCChhHHHHHHHHHHHHHHhCC------------CCceEEEEEeCCCCcccc---c---CCHHHHHHHHHHcCC
Q 030225 68 AVVVYDITSMDSFERAKKWVQELQRQGN------------PNLIMFLVANKVDLEEKR---K---VKNEEGELYAQENGL 129 (181)
Q Consensus 68 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~------------~~~p~ivi~nK~D~~~~~---~---~~~~~~~~~~~~~~~ 129 (181)
+|+|||+++..+++.+..|++.+..... .++|++||+||+|+...+ . +..++++++++++++
T Consensus 110 iILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~~~e~a~~~A~~~g~ 189 (334)
T PLN00023 110 VIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGNLVDAARQWVEKQGL 189 (334)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccccccccccccccHHHHHHHHHHcCC
Confidence 9999999999999999999999987531 258999999999996542 2 357889999999884
No 128
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.95 E-value=9.6e-27 Score=156.49 Aligned_cols=145 Identities=26% Similarity=0.357 Sum_probs=115.0
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|||||||+++|.+..+...+.++++..+.. .... .+.+.+||+||+..+..++..++.++|++++|+|+++.+++
T Consensus 8 ~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~--~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~ 83 (159)
T cd04159 8 QNSGKTTLVNVIAGGQFSEDTIPTVGFNMRK--VTKG--NVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAADRTAL 83 (159)
T ss_pred CCCCHHHHHHHHccCCCCcCccCCCCcceEE--EEEC--CEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCCHHHH
Confidence 6999999999999999998888888866543 2233 37899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh-CCCCceEEEEEeCCCCcccccCCHHHHHHHH-----HHcCCeEEEEecCCCCCHHHHHHHHHH
Q 030225 81 ERAKKWVQELQRQ-GNPNLIMFLVANKVDLEEKRKVKNEEGELYA-----QENGLSFLETSAKSAHNVNELFYEIAK 151 (181)
Q Consensus 81 ~~~~~~~~~~~~~-~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 151 (181)
.....|+..+... ...++|+++++||+|+.+... ..+..... ...+++++++||+++.|+++++++|.+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 84 EAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALS--VDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDWLIK 158 (159)
T ss_pred HHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcC--HHHHHHHhCcccccCCceEEEEEEeccCCChHHHHHHHhh
Confidence 8888777776543 225789999999999854322 12221111 123467899999999999999999975
No 129
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.94 E-value=1.4e-25 Score=154.10 Aligned_cols=147 Identities=20% Similarity=0.248 Sum_probs=106.9
Q ss_pred CCCchhHHHHHHhhCC-------CCCcccc------ceeeeEEEEEEEE-----CCeEEEEEEEeCCChhhhhccchhhc
Q 030225 1 MGTGKTSLVLRFVKGQ-------FFDFQES------TIGAAFFTQVLSL-----NEVTIKFDIWDTAGQERYHSLAPMYY 62 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~-------~~~~~~~------t~~~~~~~~~~~~-----~~~~~~~~i~D~~G~~~~~~~~~~~~ 62 (181)
+|||||||+++|++.. +...+.+ +.|.++....... ++..+.+.+|||||+..+..++..++
T Consensus 9 ~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~ 88 (179)
T cd01890 9 IDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFSYEVSRSL 88 (179)
T ss_pred cCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhHHHHHHHH
Confidence 6899999999999743 1122222 2234444333322 56778899999999999999999999
Q ss_pred cCCcEEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCC---eEEEEecCCC
Q 030225 63 RGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGL---SFLETSAKSA 139 (181)
Q Consensus 63 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~---~~~~~Sa~~~ 139 (181)
+++|++|+|+|++++.++.....|.... . .++|+++++||+|+.+.. ......++++.+++ .++++||++|
T Consensus 89 ~~ad~~i~v~D~~~~~~~~~~~~~~~~~-~---~~~~iiiv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~g 162 (179)
T cd01890 89 AACEGALLLVDATQGVEAQTLANFYLAL-E---NNLEIIPVINKIDLPSAD--PERVKQQIEDVLGLDPSEAILVSAKTG 162 (179)
T ss_pred HhcCeEEEEEECCCCccHhhHHHHHHHH-H---cCCCEEEEEECCCCCcCC--HHHHHHHHHHHhCCCcccEEEeeccCC
Confidence 9999999999999876666555554322 2 467899999999985422 12233455555665 3899999999
Q ss_pred CCHHHHHHHHHHHH
Q 030225 140 HNVNELFYEIAKRL 153 (181)
Q Consensus 140 ~gi~~~~~~l~~~~ 153 (181)
+|++++|++|.+.+
T Consensus 163 ~gi~~l~~~l~~~~ 176 (179)
T cd01890 163 LGVEDLLEAIVERI 176 (179)
T ss_pred CCHHHHHHHHHhhC
Confidence 99999999998764
No 130
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.94 E-value=4e-25 Score=164.31 Aligned_cols=156 Identities=19% Similarity=0.154 Sum_probs=110.4
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhh----hhccch---hhccCCcEEEEEEE
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER----YHSLAP---MYYRGAAAAVVVYD 73 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----~~~~~~---~~~~~~d~~i~v~d 73 (181)
||||||||+++|..........+.++.....-.+.+. ...++.+||+||..+ ...+.. ..++.++++++|+|
T Consensus 167 PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~-~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~vlI~ViD 245 (335)
T PRK12299 167 PNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVD-DYKSFVIADIPGLIEGASEGAGLGHRFLKHIERTRLLLHLVD 245 (335)
T ss_pred CCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeC-CCcEEEEEeCCCccCCCCccccHHHHHHHHhhhcCEEEEEEc
Confidence 8999999999999765332211222222222223332 234688999999632 112222 34567999999999
Q ss_pred CCChhHHHHHHHHHHHHHHhCC--CCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHH
Q 030225 74 ITSMDSFERAKKWVQELQRQGN--PNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAK 151 (181)
Q Consensus 74 ~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 151 (181)
+++.++++.+..|...+..+.. .++|+++++||+|+.........+...+....+.+++++||++++|+++++++|.+
T Consensus 246 ~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI~eL~~~L~~ 325 (335)
T PRK12299 246 IEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGEGLDELLRALWE 325 (335)
T ss_pred CCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 9988889999999988877532 47899999999998654444444445555566789999999999999999999999
Q ss_pred HHHhhC
Q 030225 152 RLAEVN 157 (181)
Q Consensus 152 ~~~~~~ 157 (181)
.+.+.+
T Consensus 326 ~l~~~~ 331 (335)
T PRK12299 326 LLEEAR 331 (335)
T ss_pred HHHhhh
Confidence 877643
No 131
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.93 E-value=1e-26 Score=148.12 Aligned_cols=148 Identities=22% Similarity=0.379 Sum_probs=121.4
Q ss_pred CCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHHH
Q 030225 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFE 81 (181)
Q Consensus 2 ~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~ 81 (181)
+||||||++....+.+.+...||.| .....+..+++.+.+||.||+..|+.+|..|.+.+++++||+|++|++.++
T Consensus 30 ~sGKtt~Vn~ia~g~~~edmiptvG----fnmrk~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~VDaad~~k~~ 105 (186)
T KOG0075|consen 30 NSGKTTLVNVIARGQYLEDMIPTVG----FNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYVVDAADPDKLE 105 (186)
T ss_pred cCCcceEEEEEeeccchhhhccccc----ceeEEeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEEeecCCcccch
Confidence 7999999999999998888888888 455567788899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCC-CCceEEEEEeCCCCccccc---CCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHH
Q 030225 82 RAKKWVQELQRQGN-PNLIMFLVANKVDLEEKRK---VKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 153 (181)
Q Consensus 82 ~~~~~~~~~~~~~~-~~~p~ivi~nK~D~~~~~~---~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~ 153 (181)
..+..+..++.+.. .+.|++++|||.|+.+.-. +.++.+...+..+.+-.|.+|+++..+++-+.+||++.-
T Consensus 106 ~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~~li~rmgL~sitdREvcC~siScke~~Nid~~~~Wli~hs 181 (186)
T KOG0075|consen 106 ASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKIALIERMGLSSITDREVCCFSISCKEKVNIDITLDWLIEHS 181 (186)
T ss_pred hhHHHHHHHhcchhhcCCcEEEecccccCcccccHHHHHHHhCccccccceEEEEEEEEcCCccHHHHHHHHHHHh
Confidence 88888888877543 7899999999999865321 111111122233345689999999999999999998753
No 132
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.93 E-value=3.9e-25 Score=150.68 Aligned_cols=150 Identities=19% Similarity=0.155 Sum_probs=102.9
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChh----hhhccchhh---ccCCcEEEEEEE
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE----RYHSLAPMY---YRGAAAAVVVYD 73 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~----~~~~~~~~~---~~~~d~~i~v~d 73 (181)
||||||||+++|.+........+..+.+.....+..++ ...+.+|||||.. .++.+...+ +..+|++++|+|
T Consensus 9 ~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D 87 (170)
T cd01898 9 PNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDD-GRSFVVADIPGLIEGASEGKGLGHRFLRHIERTRLLLHVID 87 (170)
T ss_pred CCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCC-CCeEEEEecCcccCcccccCCchHHHHHHHHhCCEEEEEEe
Confidence 69999999999997654211111111111111122222 2478899999963 222233333 346999999999
Q ss_pred CCCh-hHHHHHHHHHHHHHHhCC--CCceEEEEEeCCCCcccccCCHHHHHHHHHH-cCCeEEEEecCCCCCHHHHHHHH
Q 030225 74 ITSM-DSFERAKKWVQELQRQGN--PNLIMFLVANKVDLEEKRKVKNEEGELYAQE-NGLSFLETSAKSAHNVNELFYEI 149 (181)
Q Consensus 74 ~~~~-~s~~~~~~~~~~~~~~~~--~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~gi~~~~~~l 149 (181)
++++ ++++.+..|.+.+..... .+.|+++++||+|+.+.... .+....+... .+.+++++||+++.|++++|++|
T Consensus 88 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i 166 (170)
T cd01898 88 LSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEEL-FELLKELLKELWGKPVFPISALTGEGLDELLRKL 166 (170)
T ss_pred cCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhh-HHHHHHHHhhCCCCCEEEEecCCCCCHHHHHHHH
Confidence 9998 788888889888876532 46899999999998654443 3334444555 36889999999999999999999
Q ss_pred HHH
Q 030225 150 AKR 152 (181)
Q Consensus 150 ~~~ 152 (181)
.+.
T Consensus 167 ~~~ 169 (170)
T cd01898 167 AEL 169 (170)
T ss_pred Hhh
Confidence 864
No 133
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.93 E-value=3.9e-24 Score=142.30 Aligned_cols=149 Identities=46% Similarity=0.775 Sum_probs=118.8
Q ss_pred CCCchhHHHHHHhhCCC-CCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhH
Q 030225 1 MGTGKTSLVLRFVKGQF-FDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDS 79 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s 79 (181)
+|+|||||++++.+... .....++. ..+.............+.+||+||...+...+..++..+|++++|+|++++.+
T Consensus 5 ~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~ 83 (157)
T cd00882 5 SGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVTDRES 83 (157)
T ss_pred CCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECcCHHH
Confidence 69999999999998877 45554555 67777777777788899999999998888888889999999999999999999
Q ss_pred HHHHHHHHH-HHHHhCCCCceEEEEEeCCCCcccccCCHHH-HHHHHHHcCCeEEEEecCCCCCHHHHHHHHH
Q 030225 80 FERAKKWVQ-ELQRQGNPNLIMFLVANKVDLEEKRKVKNEE-GELYAQENGLSFLETSAKSAHNVNELFYEIA 150 (181)
Q Consensus 80 ~~~~~~~~~-~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~ 150 (181)
+.....|+. .+......++|+++++||+|+.......... ........+.+++++|+.++.|+++++++|.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 84 FENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEELFEELA 156 (157)
T ss_pred HHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence 888877732 2223334789999999999986544433322 3445555678999999999999999999986
No 134
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.93 E-value=7e-25 Score=149.18 Aligned_cols=148 Identities=18% Similarity=0.126 Sum_probs=100.8
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhc---------cchhhccCCcEEEEE
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHS---------LAPMYYRGAAAAVVV 71 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~---------~~~~~~~~~d~~i~v 71 (181)
||||||||+++|.+..+.....+..+ ............+.+.+|||||...... ........+|++++|
T Consensus 9 ~~~GKssli~~l~~~~~~~~~~~~~t--~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~d~~l~v 86 (168)
T cd01897 9 PNVGKSSLVNKLTRAKPEVAPYPFTT--KSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHLRAAVLFL 86 (168)
T ss_pred CCCCHHHHHHHHhcCCCccCCCCCcc--cceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhccCcEEEE
Confidence 79999999999998876432212111 1122222333457899999999742110 001112236899999
Q ss_pred EECCChhH--HHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Q 030225 72 YDITSMDS--FERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 149 (181)
Q Consensus 72 ~d~~~~~s--~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l 149 (181)
+|+++..+ ++....|+..+.... .+.|+++++||+|+.+...+.. ...+....+.+++++||++|.|++++|++|
T Consensus 87 ~d~~~~~~~~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~--~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 163 (168)
T cd01897 87 FDPSETCGYSLEEQLSLFEEIKPLF-KNKPVIVVLNKIDLLTFEDLSE--IEEEEELEGEEVLKISTLTEEGVDEVKNKA 163 (168)
T ss_pred EeCCcccccchHHHHHHHHHHHhhc-CcCCeEEEEEccccCchhhHHH--HHHhhhhccCceEEEEecccCCHHHHHHHH
Confidence 99998765 355667777776543 4789999999999865443322 444555556889999999999999999999
Q ss_pred HHHH
Q 030225 150 AKRL 153 (181)
Q Consensus 150 ~~~~ 153 (181)
.+.+
T Consensus 164 ~~~~ 167 (168)
T cd01897 164 CELL 167 (168)
T ss_pred HHHh
Confidence 8865
No 135
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.93 E-value=1.7e-24 Score=146.50 Aligned_cols=144 Identities=17% Similarity=0.139 Sum_probs=97.3
Q ss_pred CCCchhHHHHHHhhCC---CCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCC-
Q 030225 1 MGTGKTSLVLRFVKGQ---FFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITS- 76 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~- 76 (181)
||||||||+++|.+.. +...+.++++.+.....+.... ...+.+|||||++.+......++.++|++++|+|+++
T Consensus 9 ~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~V~d~~~~ 87 (164)
T cd04171 9 IDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVLLVVAADEG 87 (164)
T ss_pred CCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEEEEEECCCC
Confidence 7999999999999642 3333333434333333444432 3578999999999887766777889999999999986
Q ss_pred --hhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccc--CCHHHHHHHHHH---cCCeEEEEecCCCCCHHHHHHHH
Q 030225 77 --MDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRK--VKNEEGELYAQE---NGLSFLETSAKSAHNVNELFYEI 149 (181)
Q Consensus 77 --~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~--~~~~~~~~~~~~---~~~~~~~~Sa~~~~gi~~~~~~l 149 (181)
+.+.+. +..+... ..+|+++++||+|+.+... ....+.....+. .+.+++++||++++|++++++++
T Consensus 88 ~~~~~~~~----~~~~~~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 161 (164)
T cd04171 88 IMPQTREH----LEILELL--GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEGIEELKEYL 161 (164)
T ss_pred ccHhHHHH----HHHHHHh--CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcCHHHHHHHH
Confidence 333322 2222222 2348999999999864321 112333344443 35789999999999999999988
Q ss_pred HH
Q 030225 150 AK 151 (181)
Q Consensus 150 ~~ 151 (181)
.+
T Consensus 162 ~~ 163 (164)
T cd04171 162 DE 163 (164)
T ss_pred hh
Confidence 64
No 136
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.93 E-value=3e-24 Score=146.81 Aligned_cols=141 Identities=21% Similarity=0.287 Sum_probs=107.7
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|||||||++++.+..+.. +.++.|..+. .+..++ ..+.+||+||+..+...+..+++++|++++|+|+++..++
T Consensus 23 ~g~GKStLl~~l~~~~~~~-~~~t~g~~~~--~i~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~D~~~~~~~ 97 (173)
T cd04155 23 DNAGKTTILKQLASEDISH-ITPTQGFNIK--TVQSDG--FKLNVWDIGGQRAIRPYWRNYFENTDCLIYVIDSADKKRL 97 (173)
T ss_pred CCCCHHHHHHHHhcCCCcc-cCCCCCcceE--EEEECC--EEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEeCCCHHHH
Confidence 6999999999999876543 4567665443 333343 5788999999998888888899999999999999999889
Q ss_pred HHHHHHHHHHHHh-CCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcC--------CeEEEEecCCCCCHHHHHHHHHH
Q 030225 81 ERAKKWVQELQRQ-GNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENG--------LSFLETSAKSAHNVNELFYEIAK 151 (181)
Q Consensus 81 ~~~~~~~~~~~~~-~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~--------~~~~~~Sa~~~~gi~~~~~~l~~ 151 (181)
.....|+..+... ...++|+++++||+|+.+... .++ +.+..+ .+++++||++|+|++++|+||++
T Consensus 98 ~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~---i~~~l~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 172 (173)
T cd04155 98 EEAGAELVELLEEEKLAGVPVLVFANKQDLATAAP--AEE---IAEALNLHDLRDRTWHIQACSAKTGEGLQEGMNWVCK 172 (173)
T ss_pred HHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCC--HHH---HHHHcCCcccCCCeEEEEEeECCCCCCHHHHHHHHhc
Confidence 8888777776543 235789999999999854322 122 222222 24789999999999999999975
No 137
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.93 E-value=3.6e-24 Score=144.19 Aligned_cols=144 Identities=20% Similarity=0.161 Sum_probs=105.9
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhc------cchhhcc--CCcEEEEEE
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHS------LAPMYYR--GAAAAVVVY 72 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~------~~~~~~~--~~d~~i~v~ 72 (181)
+|||||||++++.+........+.++.+.....+..++ ..+.+|||||...+.. ++..++. ++|++++|+
T Consensus 5 ~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~ 82 (158)
T cd01879 5 PNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVNVV 82 (158)
T ss_pred CCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEEEe
Confidence 68999999999998765444445555555455555554 4688999999876554 2455564 899999999
Q ss_pred ECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHH
Q 030225 73 DITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKR 152 (181)
Q Consensus 73 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~ 152 (181)
|+++++... .|+..+.. .++|+++++||+|+.+...+.. ....+....+++++++||+++.|+++++++|.+.
T Consensus 83 d~~~~~~~~---~~~~~~~~---~~~~~iiv~NK~Dl~~~~~~~~-~~~~~~~~~~~~~~~iSa~~~~~~~~l~~~l~~~ 155 (158)
T cd01879 83 DATNLERNL---YLTLQLLE---LGLPVVVALNMIDEAEKRGIKI-DLDKLSELLGVPVVPTSARKGEGIDELKDAIAEL 155 (158)
T ss_pred eCCcchhHH---HHHHHHHH---cCCCEEEEEehhhhcccccchh-hHHHHHHhhCCCeEEEEccCCCCHHHHHHHHHHH
Confidence 999765432 34444433 3689999999999966444333 3456667778999999999999999999999876
Q ss_pred H
Q 030225 153 L 153 (181)
Q Consensus 153 ~ 153 (181)
+
T Consensus 156 ~ 156 (158)
T cd01879 156 A 156 (158)
T ss_pred h
Confidence 3
No 138
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.93 E-value=6.4e-24 Score=142.42 Aligned_cols=149 Identities=28% Similarity=0.485 Sum_probs=119.3
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCCh-hH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSM-DS 79 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~-~s 79 (181)
+|||||||++++....+...+.++++.++....+..++..+.+.+||+||+..+..++..++++++.+++++|.... .+
T Consensus 10 ~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~~d~~~~v~~ 89 (161)
T TIGR00231 10 PNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRVFDIVILVLD 89 (161)
T ss_pred CCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEEEEEeeeehh
Confidence 69999999999999987777778888877777677777778899999999999988889999999999999999877 66
Q ss_pred HHHHH-HHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHH
Q 030225 80 FERAK-KWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIA 150 (181)
Q Consensus 80 ~~~~~-~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~ 150 (181)
+.... .|...+......+.|+++++||.|+.... ........+......+++++||.++.|+.+++++|-
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~l~ 160 (161)
T TIGR00231 90 VEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAK-LKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIVE 160 (161)
T ss_pred hhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcch-hhHHHHHHHhhccCCceEEeecCCCCCHHHHHHHhh
Confidence 66654 66666666543378999999999986533 233333334443457899999999999999999873
No 139
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.92 E-value=2e-23 Score=147.86 Aligned_cols=158 Identities=39% Similarity=0.526 Sum_probs=130.5
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCCh-hH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSM-DS 79 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~-~s 79 (181)
+|||||||+++|.++.+...+.++++..+...........+++.+||++|+++++.++..++.+++++++|||.++. .+
T Consensus 14 ~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~d~~~~~~~ 93 (219)
T COG1100 14 GGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIVYDSTLRESS 93 (219)
T ss_pred CCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEEEecccchhh
Confidence 68999999999999999999999998888777777776688999999999999999999999999999999999994 45
Q ss_pred HHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccc------------cCCHHHHHHHHHHc---CCeEEEEecC--CCCCH
Q 030225 80 FERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR------------KVKNEEGELYAQEN---GLSFLETSAK--SAHNV 142 (181)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~------------~~~~~~~~~~~~~~---~~~~~~~Sa~--~~~gi 142 (181)
++....|...+........|+++++||+|+.... .............. ...++++|++ .+.++
T Consensus 94 ~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~v 173 (219)
T COG1100 94 DELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETSAKSLTGPNV 173 (219)
T ss_pred hHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEeecccCCCcCH
Confidence 5667889989888765679999999999997643 23333333333222 3348999999 99999
Q ss_pred HHHHHHHHHHHHhhCC
Q 030225 143 NELFYEIAKRLAEVNP 158 (181)
Q Consensus 143 ~~~~~~l~~~~~~~~~ 158 (181)
.++|..+...+.+...
T Consensus 174 ~~~~~~~~~~~~~~~~ 189 (219)
T COG1100 174 NELFKELLRKLLEEIE 189 (219)
T ss_pred HHHHHHHHHHHHHhhh
Confidence 9999999998876533
No 140
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.92 E-value=3.8e-24 Score=150.03 Aligned_cols=145 Identities=22% Similarity=0.204 Sum_probs=102.5
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhh---------hhccchhhccCCcEEEEE
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER---------YHSLAPMYYRGAAAAVVV 71 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~---------~~~~~~~~~~~~d~~i~v 71 (181)
||||||||++++.+..+.....+..+.+.....+.+.+. ..+.+||+||... +...+ ..+.++|++++|
T Consensus 50 ~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~~~~~~d~ii~v 127 (204)
T cd01878 50 TNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRSTL-EEVAEADLLLHV 127 (204)
T ss_pred CCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHHH-HHHhcCCeEEEE
Confidence 699999999999987643322222222223333334433 3788999999732 11111 236689999999
Q ss_pred EECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHH
Q 030225 72 YDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAK 151 (181)
Q Consensus 72 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 151 (181)
+|++++.++.....|...+......+.|+++|+||+|+...... .......+.+++++||+++.|+++++++|.+
T Consensus 128 ~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~-----~~~~~~~~~~~~~~Sa~~~~gi~~l~~~L~~ 202 (204)
T cd01878 128 VDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEEL-----EERLEAGRPDAVFISAKTGEGLDELLEAIEE 202 (204)
T ss_pred EECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHH-----HHHhhcCCCceEEEEcCCCCCHHHHHHHHHh
Confidence 99999888887777777776654457899999999998553321 1334445678999999999999999999987
Q ss_pred H
Q 030225 152 R 152 (181)
Q Consensus 152 ~ 152 (181)
.
T Consensus 203 ~ 203 (204)
T cd01878 203 L 203 (204)
T ss_pred h
Confidence 5
No 141
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=9.2e-25 Score=138.19 Aligned_cols=146 Identities=23% Similarity=0.377 Sum_probs=118.4
Q ss_pred CCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHHH
Q 030225 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFE 81 (181)
Q Consensus 2 ~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~ 81 (181)
++||||++.+|+.+.... ..||+|..+. .+...++.|++||.+|++..+.+|.+||....++|||+|..+.+.++
T Consensus 27 ~aGKTtiLyKLkl~~~~~-~ipTvGFnve----tVtykN~kfNvwdvGGqd~iRplWrhYy~gtqglIFV~Dsa~~dr~e 101 (180)
T KOG0071|consen 27 AAGKTTILYKLKLGQSVT-TIPTVGFNVE----TVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIE 101 (180)
T ss_pred cCCceehhhHHhcCCCcc-cccccceeEE----EEEeeeeEEeeeeccCchhhhHHHHhhccCCceEEEEEeccchhhHH
Confidence 799999999999877555 4588885443 34567889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh-CCCCceEEEEEeCCCCcccccCCHHHHHHH-----HHHcCCeEEEEecCCCCCHHHHHHHHHHHHH
Q 030225 82 RAKKWVQELQRQ-GNPNLIMFLVANKVDLEEKRKVKNEEGELY-----AQENGLSFLETSAKSAHNVNELFYEIAKRLA 154 (181)
Q Consensus 82 ~~~~~~~~~~~~-~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~ 154 (181)
+.+..+-.+... .....|+++.+||.|+.+... ..+...+ ++...+.+..++|.+|.|+.+.|.||.+.+.
T Consensus 102 eAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~--pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~eglswlsnn~~ 178 (180)
T KOG0071|consen 102 EARNELHRIINDREMRDAIILILANKQDLPDAMK--PQEIQDKLELERIRDRNWYVQPSCALSGDGLKEGLSWLSNNLK 178 (180)
T ss_pred HHHHHHHHHhCCHhhhcceEEEEecCcccccccC--HHHHHHHhccccccCCccEeeccccccchhHHHHHHHHHhhcc
Confidence 998887777653 346889999999999976543 2333322 3444577899999999999999999987653
No 142
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.92 E-value=1.3e-24 Score=144.03 Aligned_cols=127 Identities=20% Similarity=0.244 Sum_probs=94.0
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChh-----hhhccchhhccCCcEEEEEEECC
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE-----RYHSLAPMYYRGAAAAVVVYDIT 75 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~-----~~~~~~~~~~~~~d~~i~v~d~~ 75 (181)
||||||||+++|.+..+ .+.+|++.++ .. .+||+||.. .+..+.. .++++|++++|||++
T Consensus 9 ~~vGKSsL~~~l~~~~~--~~~~t~~~~~-------~~-----~~iDt~G~~~~~~~~~~~~~~-~~~~ad~vilv~d~~ 73 (142)
T TIGR02528 9 VGCGKTTLTQALQGEEI--LYKKTQAVEY-------ND-----GAIDTPGEYVENRRLYSALIV-TAADADVIALVQSAT 73 (142)
T ss_pred CCCCHHHHHHHHcCCcc--ccccceeEEE-------cC-----eeecCchhhhhhHHHHHHHHH-HhhcCCEEEEEecCC
Confidence 79999999999998765 2344544332 11 589999972 3344433 478999999999999
Q ss_pred ChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCC-eEEEEecCCCCCHHHHHHHHH
Q 030225 76 SMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGL-SFLETSAKSAHNVNELFYEIA 150 (181)
Q Consensus 76 ~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~~~~~l~ 150 (181)
++.++.. ..|...+ ..|+++++||+|+.+ .....+++.++++..+. +++++||+++.|++++|++|.
T Consensus 74 ~~~s~~~-~~~~~~~------~~p~ilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 141 (142)
T TIGR02528 74 DPESRFP-PGFASIF------VKPVIGLVTKIDLAE-ADVDIERAKELLETAGAEPIFEISSVDEQGLEALVDYLN 141 (142)
T ss_pred CCCcCCC-hhHHHhc------cCCeEEEEEeeccCC-cccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHHHHh
Confidence 9988754 3343321 248999999999864 33455666777777776 799999999999999999984
No 143
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.92 E-value=9.8e-24 Score=143.45 Aligned_cols=150 Identities=15% Similarity=0.114 Sum_probs=102.8
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEEC-CeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLN-EVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDS 79 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s 79 (181)
+|||||||+++|....+.....++++.+.....+..+ +....+.+|||||+..+..++..++..+|++++|+|+++...
T Consensus 9 ~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~d~~~~~~ 88 (168)
T cd01887 9 VDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVVAADDGVM 88 (168)
T ss_pred CCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEEECCCCcc
Confidence 6999999999999988776544444444433333333 235678999999999888888888999999999999987432
Q ss_pred HHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccC-CHHHHHHHHH------HcCCeEEEEecCCCCCHHHHHHHHHHH
Q 030225 80 FERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKV-KNEEGELYAQ------ENGLSFLETSAKSAHNVNELFYEIAKR 152 (181)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~-~~~~~~~~~~------~~~~~~~~~Sa~~~~gi~~~~~~l~~~ 152 (181)
.. ....+..+.. .+.|+++++||+|+.+.... .......+.. ...++++++||++++|+++++++|.+.
T Consensus 89 ~~-~~~~~~~~~~---~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 164 (168)
T cd01887 89 PQ-TIEAIKLAKA---ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDLLEAILLL 164 (168)
T ss_pred HH-HHHHHHHHHH---cCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCHHHHHHHHHHh
Confidence 11 1112222322 46799999999998642210 0111111111 113679999999999999999999876
Q ss_pred HH
Q 030225 153 LA 154 (181)
Q Consensus 153 ~~ 154 (181)
..
T Consensus 165 ~~ 166 (168)
T cd01887 165 AE 166 (168)
T ss_pred hh
Confidence 54
No 144
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.91 E-value=7.3e-24 Score=147.51 Aligned_cols=152 Identities=20% Similarity=0.209 Sum_probs=105.8
Q ss_pred CCCchhHHHHHHhh--CCCCCcc------------ccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCc
Q 030225 1 MGTGKTSLVLRFVK--GQFFDFQ------------ESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAA 66 (181)
Q Consensus 1 ~~~GKttLl~~l~~--~~~~~~~------------~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 66 (181)
+|||||||+++|+. +.+...+ .++.|.++......+++..+++.+||+||++.|...+..+++++|
T Consensus 11 ~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d 90 (194)
T cd01891 11 VDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEVERVLSMVD 90 (194)
T ss_pred CCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHHHHHHHhcC
Confidence 68999999999997 4444332 234555565666666667788999999999999999999999999
Q ss_pred EEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccc-CCHHHHHHHHHH-------cCCeEEEEecCC
Q 030225 67 AAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRK-VKNEEGELYAQE-------NGLSFLETSAKS 138 (181)
Q Consensus 67 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~-~~~~~~~~~~~~-------~~~~~~~~Sa~~ 138 (181)
++++|+|+++. .+.....++..+.. .+.|+++++||+|+.+... ...++...+... .+++++++||++
T Consensus 91 ~~ilV~d~~~~-~~~~~~~~~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Sa~~ 166 (194)
T cd01891 91 GVLLLVDASEG-PMPQTRFVLKKALE---LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFPVLYASAKN 166 (194)
T ss_pred EEEEEEECCCC-ccHHHHHHHHHHHH---cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccCEEEeehhc
Confidence 99999999873 22333344444433 3678999999999854322 122333444322 367899999999
Q ss_pred CCCHHHH------HHHHHHHHHhh
Q 030225 139 AHNVNEL------FYEIAKRLAEV 156 (181)
Q Consensus 139 ~~gi~~~------~~~l~~~~~~~ 156 (181)
|.|+.++ +++|++.+.+.
T Consensus 167 g~~~~~~~~~~~~~~~l~~~~~~~ 190 (194)
T cd01891 167 GWASLNLEDPSEDLEPLFDTIIEH 190 (194)
T ss_pred cccccccccchhhHHHHHHHHHhc
Confidence 9887444 45555555543
No 145
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.91 E-value=4.3e-23 Score=153.36 Aligned_cols=151 Identities=19% Similarity=0.190 Sum_probs=104.0
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhh----hccchhh---ccCCcEEEEEEE
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERY----HSLAPMY---YRGAAAAVVVYD 73 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----~~~~~~~---~~~~d~~i~v~d 73 (181)
||||||||+++|..........+.++.....-.+.+++ ..++.+||+||..+. ..+...+ +..++++++|+|
T Consensus 166 pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhierad~ll~VvD 244 (329)
T TIGR02729 166 PNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHIERTRVLLHLID 244 (329)
T ss_pred CCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHHHhhCEEEEEEc
Confidence 79999999999998653221111111111122223332 357889999997421 1233333 457999999999
Q ss_pred CCCh---hHHHHHHHHHHHHHHhC--CCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Q 030225 74 ITSM---DSFERAKKWVQELQRQG--NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYE 148 (181)
Q Consensus 74 ~~~~---~s~~~~~~~~~~~~~~~--~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~ 148 (181)
+++. ++++.+..|.+.+.... ..++|+++|+||+|+..... ..+....+.+..+.+++++||++++|+++++++
T Consensus 245 ~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~-~~~~~~~l~~~~~~~vi~iSAktg~GI~eL~~~ 323 (329)
T TIGR02729 245 ISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEE-LAELLKELKKALGKPVFPISALTGEGLDELLYA 323 (329)
T ss_pred CccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHH-HHHHHHHHHHHcCCcEEEEEccCCcCHHHHHHH
Confidence 9986 67788888887776543 24789999999999865432 233344556666789999999999999999999
Q ss_pred HHHHH
Q 030225 149 IAKRL 153 (181)
Q Consensus 149 l~~~~ 153 (181)
|.+.+
T Consensus 324 I~~~l 328 (329)
T TIGR02729 324 LAELL 328 (329)
T ss_pred HHHHh
Confidence 98754
No 146
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.91 E-value=1.1e-23 Score=144.24 Aligned_cols=151 Identities=21% Similarity=0.178 Sum_probs=102.3
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhh----hhccc---hhhccCCcEEEEEEE
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER----YHSLA---PMYYRGAAAAVVVYD 73 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----~~~~~---~~~~~~~d~~i~v~d 73 (181)
||||||||+++|.+........+..+.+.....+..++ ...+.+||+||... ...++ ...++++|++++|+|
T Consensus 5 ~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d 83 (176)
T cd01881 5 PNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPD-GARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAILHVVD 83 (176)
T ss_pred CCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCC-CCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEEEEEe
Confidence 69999999999998864211111111222222233331 45678999999632 12222 234678999999999
Q ss_pred CCCh------hHHHHHHHHHHHHHHhCC-------CCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCC
Q 030225 74 ITSM------DSFERAKKWVQELQRQGN-------PNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAH 140 (181)
Q Consensus 74 ~~~~------~s~~~~~~~~~~~~~~~~-------~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 140 (181)
++++ .++++...|...+..... .+.|+++++||+|+..................+..++++||+++.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 163 (176)
T cd01881 84 ASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPISAKTEE 163 (176)
T ss_pred ccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEehhhhc
Confidence 9988 578888778777765432 378999999999986544433322233344456789999999999
Q ss_pred CHHHHHHHHHHH
Q 030225 141 NVNELFYEIAKR 152 (181)
Q Consensus 141 gi~~~~~~l~~~ 152 (181)
|++++++++.+.
T Consensus 164 gl~~l~~~l~~~ 175 (176)
T cd01881 164 GLDELIRAIYEL 175 (176)
T ss_pred CHHHHHHHHHhh
Confidence 999999999764
No 147
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.91 E-value=2.1e-23 Score=151.96 Aligned_cols=151 Identities=19% Similarity=0.054 Sum_probs=99.7
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhh-hc-------cchhhccCCcEEEEEE
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERY-HS-------LAPMYYRGAAAAVVVY 72 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-~~-------~~~~~~~~~d~~i~v~ 72 (181)
||||||||+|+|.+..+.... +..+++.............++.+|||||.... +. ....++.++|++++|+
T Consensus 9 pnvGKSTLln~L~~~~~~~vs-~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aDvvl~Vv 87 (270)
T TIGR00436 9 PNVGKSTLLNQLHGQKISITS-PKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVDLILFVV 87 (270)
T ss_pred CCCCHHHHHHHHhCCcEeecC-CCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCCEEEEEE
Confidence 799999999999998764322 11122221111111222356899999996432 11 1235678999999999
Q ss_pred ECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCC-eEEEEecCCCCCHHHHHHHHHH
Q 030225 73 DITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGL-SFLETSAKSAHNVNELFYEIAK 151 (181)
Q Consensus 73 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~~~~~l~~ 151 (181)
|+++..+.. ..++..+.. .+.|+++++||+|+..... .......+....+. +++++||++|.|+++++++|.+
T Consensus 88 D~~~~~~~~--~~i~~~l~~---~~~p~ilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~v~~iSA~~g~gi~~L~~~l~~ 161 (270)
T TIGR00436 88 DSDQWNGDG--EFVLTKLQN---LKRPVVLTRNKLDNKFKDK-LLPLIDKYAILEDFKDIVPISALTGDNTSFLAAFIEV 161 (270)
T ss_pred ECCCCCchH--HHHHHHHHh---cCCCEEEEEECeeCCCHHH-HHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHH
Confidence 999876654 334444433 3689999999999853222 22233444444444 7999999999999999999998
Q ss_pred HHHhhCC
Q 030225 152 RLAEVNP 158 (181)
Q Consensus 152 ~~~~~~~ 158 (181)
.+.+..+
T Consensus 162 ~l~~~~~ 168 (270)
T TIGR00436 162 HLPEGPF 168 (270)
T ss_pred hCCCCCC
Confidence 8766544
No 148
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.90 E-value=9.9e-23 Score=152.64 Aligned_cols=144 Identities=22% Similarity=0.205 Sum_probs=101.5
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCh---------hhhhccchhhccCCcEEEEE
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ---------ERYHSLAPMYYRGAAAAVVV 71 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~---------~~~~~~~~~~~~~~d~~i~v 71 (181)
||+|||||+|+|.+........+..+.+.....+.++++ ..+.+|||+|. +.|...+ ..+.++|++++|
T Consensus 198 ~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~-~~i~l~DT~G~~~~l~~~lie~f~~tl-e~~~~ADlil~V 275 (351)
T TIGR03156 198 TNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDG-GEVLLTDTVGFIRDLPHELVAAFRATL-EEVREADLLLHV 275 (351)
T ss_pred CCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCC-ceEEEEecCcccccCCHHHHHHHHHHH-HHHHhCCEEEEE
Confidence 799999999999987654333333333444455555432 37889999996 2233222 247899999999
Q ss_pred EECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHH
Q 030225 72 YDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAK 151 (181)
Q Consensus 72 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 151 (181)
+|++++.+.+....|...+......++|+++|+||+|+..... .... .....+++++||++|.|+++++++|.+
T Consensus 276 vD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~-----v~~~-~~~~~~~i~iSAktg~GI~eL~~~I~~ 349 (351)
T TIGR03156 276 VDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEPR-----IERL-EEGYPEAVFVSAKTGEGLDLLLEAIAE 349 (351)
T ss_pred EECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChHh-----HHHH-HhCCCCEEEEEccCCCCHHHHHHHHHh
Confidence 9999988887777666666555445789999999999854221 1111 122356899999999999999999876
Q ss_pred H
Q 030225 152 R 152 (181)
Q Consensus 152 ~ 152 (181)
.
T Consensus 350 ~ 350 (351)
T TIGR03156 350 R 350 (351)
T ss_pred h
Confidence 4
No 149
>PRK04213 GTP-binding protein; Provisional
Probab=99.90 E-value=1.3e-23 Score=147.01 Aligned_cols=143 Identities=26% Similarity=0.237 Sum_probs=95.2
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCC-----------hhhhhccchhhcc----CC
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAG-----------QERYHSLAPMYYR----GA 65 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G-----------~~~~~~~~~~~~~----~~ 65 (181)
+|||||||+++|.+..+...+.+ ++++....+... .+.+||+|| ++.++..+..++. .+
T Consensus 18 ~~~GKSsLin~l~~~~~~~~~~~--~~t~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (201)
T PRK04213 18 SNVGKSTLVRELTGKKVRVGKRP--GVTRKPNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDEIVRYIEDNADRI 91 (201)
T ss_pred CCCCHHHHHHHHhCCCCccCCCC--ceeeCceEEeec----ceEEEeCCccccccccCHHHHHHHHHHHHHHHHhhhhhh
Confidence 69999999999998876554444 334444433333 578999999 4566666555553 45
Q ss_pred cEEEEEEECCChhHH----H------HHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCC------
Q 030225 66 AAAVVVYDITSMDSF----E------RAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGL------ 129 (181)
Q Consensus 66 d~~i~v~d~~~~~s~----~------~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~------ 129 (181)
+++++|+|.++...+ . ....++..+. ..+.|+++++||+|+.+.. .+....+....++
T Consensus 92 ~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~p~iiv~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~~ 165 (201)
T PRK04213 92 LAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLR---ELGIPPIVAVNKMDKIKNR---DEVLDEIAERLGLYPPWRQ 165 (201)
T ss_pred eEEEEEEeCccccccccccccCCCcHHHHHHHHHHH---HcCCCeEEEEECccccCcH---HHHHHHHHHHhcCCccccc
Confidence 788888887653211 0 0011122222 2468999999999985433 2344555555554
Q ss_pred ---eEEEEecCCCCCHHHHHHHHHHHHHhh
Q 030225 130 ---SFLETSAKSAHNVNELFYEIAKRLAEV 156 (181)
Q Consensus 130 ---~~~~~Sa~~~~gi~~~~~~l~~~~~~~ 156 (181)
+++++||++| |+++++++|.+.+.+.
T Consensus 166 ~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~ 194 (201)
T PRK04213 166 WQDIIAPISAKKG-GIEELKEAIRKRLHEA 194 (201)
T ss_pred cCCcEEEEecccC-CHHHHHHHHHHhhcCc
Confidence 4799999999 9999999998876543
No 150
>PRK15494 era GTPase Era; Provisional
Probab=99.90 E-value=8.2e-23 Score=152.79 Aligned_cols=152 Identities=20% Similarity=0.253 Sum_probs=101.9
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeE--EEEEEEECCeEEEEEEEeCCChhh-hhccc-------hhhccCCcEEEE
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAF--FTQVLSLNEVTIKFDIWDTAGQER-YHSLA-------PMYYRGAAAAVV 70 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~~~i~D~~G~~~-~~~~~-------~~~~~~~d~~i~ 70 (181)
||||||||+|+|++..+.. ..+..++++ ....+..++ .++.||||||... +..+. ...+.++|++++
T Consensus 61 ~nvGKSTLin~l~~~k~~i-vs~k~~tTr~~~~~~~~~~~--~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~~aDvil~ 137 (339)
T PRK15494 61 PNSGKSTLLNRIIGEKLSI-VTPKVQTTRSIITGIITLKD--TQVILYDTPGIFEPKGSLEKAMVRCAWSSLHSADLVLL 137 (339)
T ss_pred CCCCHHHHHHHHhCCceee-ccCCCCCccCcEEEEEEeCC--eEEEEEECCCcCCCcccHHHHHHHHHHHHhhhCCEEEE
Confidence 7999999999999887653 223333222 223334443 4689999999742 22221 124679999999
Q ss_pred EEECCChhHHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcC--CeEEEEecCCCCCHHHHHH
Q 030225 71 VYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENG--LSFLETSAKSAHNVNELFY 147 (181)
Q Consensus 71 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~~~~ 147 (181)
|+|.++ ++.... .|+..+... +.|.++++||+|+.+. ...+..+++...+ ..++++||++|.|++++++
T Consensus 138 VvD~~~--s~~~~~~~il~~l~~~---~~p~IlViNKiDl~~~---~~~~~~~~l~~~~~~~~i~~iSAktg~gv~eL~~ 209 (339)
T PRK15494 138 IIDSLK--SFDDITHNILDKLRSL---NIVPIFLLNKIDIESK---YLNDIKAFLTENHPDSLLFPISALSGKNIDGLLE 209 (339)
T ss_pred EEECCC--CCCHHHHHHHHHHHhc---CCCEEEEEEhhcCccc---cHHHHHHHHHhcCCCcEEEEEeccCccCHHHHHH
Confidence 999764 444443 345555433 4567789999998542 2344555555444 5799999999999999999
Q ss_pred HHHHHHHhhCCCCccc
Q 030225 148 EIAKRLAEVNPSRQTG 163 (181)
Q Consensus 148 ~l~~~~~~~~~~~~~~ 163 (181)
+|.+.+.+..+--+.+
T Consensus 210 ~L~~~l~~~~~~~~~~ 225 (339)
T PRK15494 210 YITSKAKISPWLYAED 225 (339)
T ss_pred HHHHhCCCCCCCCCCC
Confidence 9999888766544433
No 151
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.89 E-value=1.2e-22 Score=136.52 Aligned_cols=140 Identities=18% Similarity=0.121 Sum_probs=93.7
Q ss_pred CCCchhHHHHHHhhCCCC--CccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhc--------cchhhccCCcEEEE
Q 030225 1 MGTGKTSLVLRFVKGQFF--DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHS--------LAPMYYRGAAAAVV 70 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~~~~~~~d~~i~ 70 (181)
+|||||||+++|++.... ... +.++.+........+ ...+.+|||||...+.. .+...+.++|++++
T Consensus 6 ~~~GKssl~~~l~~~~~~~~~~~-~~~t~~~~~~~~~~~--~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ii~ 82 (157)
T cd01894 6 PNVGKSTLFNRLTGRRDAIVEDT-PGVTRDRIYGEAEWG--GREFILIDTGGIEPDDEGISKEIREQAELAIEEADVILF 82 (157)
T ss_pred CCCCHHHHHHHHhCCcEEeecCC-CCceeCceeEEEEEC--CeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEEEE
Confidence 699999999999987532 222 222222223333333 35788999999876443 33456788999999
Q ss_pred EEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCC-eEEEEecCCCCCHHHHHHHH
Q 030225 71 VYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGL-SFLETSAKSAHNVNELFYEI 149 (181)
Q Consensus 71 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~~~~~l 149 (181)
|+|..++.+.... .+...+.. .+.|+++++||+|+...... .......+. +++++|++++.|+++++++|
T Consensus 83 v~d~~~~~~~~~~-~~~~~~~~---~~~piiiv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l 153 (157)
T cd01894 83 VVDGREGLTPADE-EIAKYLRK---SKKPVILVVNKVDNIKEEDE-----AAEFYSLGFGEPIPISAEHGRGIGDLLDAI 153 (157)
T ss_pred EEeccccCCccHH-HHHHHHHh---cCCCEEEEEECcccCChHHH-----HHHHHhcCCCCeEEEecccCCCHHHHHHHH
Confidence 9999875443332 12222322 35899999999998653221 222334565 78999999999999999999
Q ss_pred HHH
Q 030225 150 AKR 152 (181)
Q Consensus 150 ~~~ 152 (181)
++.
T Consensus 154 ~~~ 156 (157)
T cd01894 154 LEL 156 (157)
T ss_pred Hhh
Confidence 875
No 152
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.89 E-value=1.2e-21 Score=149.17 Aligned_cols=153 Identities=22% Similarity=0.202 Sum_probs=105.1
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhh----hhccchhh---ccCCcEEEEEEE
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER----YHSLAPMY---YRGAAAAVVVYD 73 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----~~~~~~~~---~~~~d~~i~v~d 73 (181)
|||||||||++|++........|.++.....-.+.++ ....|.+||+||... ...+...| ++.++++++|+|
T Consensus 167 pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~-~~~~~~laD~PGliega~~~~gLg~~fLrhier~~llI~VID 245 (424)
T PRK12297 167 PNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETD-DGRSFVMADIPGLIEGASEGVGLGHQFLRHIERTRVIVHVID 245 (424)
T ss_pred CCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEe-CCceEEEEECCCCcccccccchHHHHHHHHHhhCCEEEEEEe
Confidence 8999999999999866432111211111111122222 135788999999632 22233333 456999999999
Q ss_pred CCCh---hHHHHHHHHHHHHHHhCC--CCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Q 030225 74 ITSM---DSFERAKKWVQELQRQGN--PNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYE 148 (181)
Q Consensus 74 ~~~~---~s~~~~~~~~~~~~~~~~--~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~ 148 (181)
+++. +.++....|.+.+..+.. ..+|.++|+||+|+.. ..+....+.+..+.+++++||++++|+++++++
T Consensus 246 ~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~----~~e~l~~l~~~l~~~i~~iSA~tgeGI~eL~~~ 321 (424)
T PRK12297 246 MSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPE----AEENLEEFKEKLGPKVFPISALTGQGLDELLYA 321 (424)
T ss_pred CCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcC----CHHHHHHHHHHhCCcEEEEeCCCCCCHHHHHHH
Confidence 9865 567777777777766532 4789999999999832 223445566666788999999999999999999
Q ss_pred HHHHHHhhCC
Q 030225 149 IAKRLAEVNP 158 (181)
Q Consensus 149 l~~~~~~~~~ 158 (181)
|.+.+.+...
T Consensus 322 L~~~l~~~~~ 331 (424)
T PRK12297 322 VAELLEETPE 331 (424)
T ss_pred HHHHHHhCcc
Confidence 9998876543
No 153
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=1.3e-23 Score=133.52 Aligned_cols=150 Identities=23% Similarity=0.316 Sum_probs=110.3
Q ss_pred CCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHHH
Q 030225 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFE 81 (181)
Q Consensus 2 ~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~ 81 (181)
|+||||++.++.-++.+. ..|++|.. ...+.++++++++||.+|+-..++.|+.||.+.|++|||+|.+|.+...
T Consensus 28 GaGkttIlyrlqvgevvt-tkPtigfn----ve~v~yKNLk~~vwdLggqtSirPyWRcYy~dt~avIyVVDssd~dris 102 (182)
T KOG0072|consen 28 GAGKTTILYRLQVGEVVT-TKPTIGFN----VETVPYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVIYVVDSSDRDRIS 102 (182)
T ss_pred CCCeeEEEEEcccCcccc-cCCCCCcC----ccccccccccceeeEccCcccccHHHHHHhcccceEEEEEeccchhhhh
Confidence 556666666665555443 44777633 3345568899999999999999999999999999999999999988776
Q ss_pred HHHHHHHH-HHHhCCCCceEEEEEeCCCCcccc---cCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHhh
Q 030225 82 RAKKWVQE-LQRQGNPNLIMFLVANKVDLEEKR---KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEV 156 (181)
Q Consensus 82 ~~~~~~~~-~~~~~~~~~p~ivi~nK~D~~~~~---~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~ 156 (181)
.....+-. +.+...++..+++++||.|..... ++....+....++.-+.++++||.+|+|+++.++||.+.+.++
T Consensus 103 ~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~~~DWL~~~l~~~ 181 (182)
T KOG0072|consen 103 IAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLDPAMDWLQRPLKSR 181 (182)
T ss_pred hhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEEeeccccccCCcHHHHHHHHHHhcc
Confidence 65444444 444444678889999999985422 2222223333444557899999999999999999999988765
No 154
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.89 E-value=6e-22 Score=157.23 Aligned_cols=148 Identities=20% Similarity=0.234 Sum_probs=108.0
Q ss_pred CCCchhHHHHHHhhCC-------CCCccccc------eeeeEEEEEEEE-----CCeEEEEEEEeCCChhhhhccchhhc
Q 030225 1 MGTGKTSLVLRFVKGQ-------FFDFQEST------IGAAFFTQVLSL-----NEVTIKFDIWDTAGQERYHSLAPMYY 62 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~-------~~~~~~~t------~~~~~~~~~~~~-----~~~~~~~~i~D~~G~~~~~~~~~~~~ 62 (181)
+++|||||+++|+... +...+..+ .|.++....+.+ ++..+.++||||||+..|...+..++
T Consensus 12 ~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF~~~v~~~l 91 (595)
T TIGR01393 12 IDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFSYEVSRSL 91 (595)
T ss_pred CCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHHHHHHHHHH
Confidence 5899999999998742 12222222 255555444333 45678999999999999999999999
Q ss_pred cCCcEEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCC---eEEEEecCCC
Q 030225 63 RGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGL---SFLETSAKSA 139 (181)
Q Consensus 63 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~---~~~~~Sa~~~ 139 (181)
+.+|++|+|+|++++........|...+ . .+.|+++++||+|+.+.. ......++.+..++ .++++||++|
T Consensus 92 ~~aD~aILVvDat~g~~~qt~~~~~~~~-~---~~ipiIiViNKiDl~~~~--~~~~~~el~~~lg~~~~~vi~vSAktG 165 (595)
T TIGR01393 92 AACEGALLLVDAAQGIEAQTLANVYLAL-E---NDLEIIPVINKIDLPSAD--PERVKKEIEEVIGLDASEAILASAKTG 165 (595)
T ss_pred HhCCEEEEEecCCCCCCHhHHHHHHHHH-H---cCCCEEEEEECcCCCccC--HHHHHHHHHHHhCCCcceEEEeeccCC
Confidence 9999999999999876666655554433 2 357899999999985422 12223344454565 4899999999
Q ss_pred CCHHHHHHHHHHHHH
Q 030225 140 HNVNELFYEIAKRLA 154 (181)
Q Consensus 140 ~gi~~~~~~l~~~~~ 154 (181)
.|++++|++|.+.+.
T Consensus 166 ~GI~~Lle~I~~~lp 180 (595)
T TIGR01393 166 IGIEEILEAIVKRVP 180 (595)
T ss_pred CCHHHHHHHHHHhCC
Confidence 999999999988764
No 155
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.89 E-value=2.8e-22 Score=132.92 Aligned_cols=140 Identities=18% Similarity=0.217 Sum_probs=95.1
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhh------hccchhhc--cCCcEEEEEE
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERY------HSLAPMYY--RGAAAAVVVY 72 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~------~~~~~~~~--~~~d~~i~v~ 72 (181)
||||||||+|+|.+........|..+++...-.+...+ ..+.++|+||--.. ......++ ...|++++|+
T Consensus 9 PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D~ii~Vv 86 (156)
T PF02421_consen 9 PNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD--QQVELVDLPGIYSLSSKSEEERVARDYLLSEKPDLIIVVV 86 (156)
T ss_dssp TTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT--EEEEEEE----SSSSSSSHHHHHHHHHHHHTSSSEEEEEE
T ss_pred CCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC--ceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCCEEEEEC
Confidence 89999999999999886544445555555444555555 56779999994221 22233333 6899999999
Q ss_pred ECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Q 030225 73 DITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 149 (181)
Q Consensus 73 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l 149 (181)
|+++.+.- .....++.+. +.|+++++||+|......... ....+.+..+++++.+||++++|++++++.|
T Consensus 87 Da~~l~r~---l~l~~ql~e~---g~P~vvvlN~~D~a~~~g~~i-d~~~Ls~~Lg~pvi~~sa~~~~g~~~L~~~I 156 (156)
T PF02421_consen 87 DATNLERN---LYLTLQLLEL---GIPVVVVLNKMDEAERKGIEI-DAEKLSERLGVPVIPVSARTGEGIDELKDAI 156 (156)
T ss_dssp EGGGHHHH---HHHHHHHHHT---TSSEEEEEETHHHHHHTTEEE--HHHHHHHHTS-EEEEBTTTTBTHHHHHHHH
T ss_pred CCCCHHHH---HHHHHHHHHc---CCCEEEEEeCHHHHHHcCCEE-CHHHHHHHhCCCEEEEEeCCCcCHHHHHhhC
Confidence 99875432 2333444443 689999999999866444332 3556667789999999999999999999875
No 156
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.89 E-value=5.6e-22 Score=137.16 Aligned_cols=149 Identities=19% Similarity=0.149 Sum_probs=103.6
Q ss_pred CCCchhHHHHHHhhCCCCCccccce--------------eeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCc
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTI--------------GAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAA 66 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~--------------~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 66 (181)
+|+|||||+++|++.........+. +.+..............+.+||+||...+...+..++..+|
T Consensus 8 ~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~d 87 (189)
T cd00881 8 VDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVIRGLSVSD 87 (189)
T ss_pred CCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHHHHHHhcC
Confidence 6999999999999877655332211 12222222233333567899999999888888888999999
Q ss_pred EEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccc--CCHHHHHHHHHH--------------cCCe
Q 030225 67 AAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRK--VKNEEGELYAQE--------------NGLS 130 (181)
Q Consensus 67 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~--~~~~~~~~~~~~--------------~~~~ 130 (181)
++++|+|++++.... ...++..+.. .+.|+++++||+|+..... ....+..+..+. ...+
T Consensus 88 ~~i~v~d~~~~~~~~-~~~~~~~~~~---~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (189)
T cd00881 88 GAILVVDANEGVQPQ-TREHLRIARE---GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEGTRNGLLVP 163 (189)
T ss_pred EEEEEEECCCCCcHH-HHHHHHHHHH---CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhhcccCCcce
Confidence 999999998765433 2233333332 4789999999999864221 112223333332 3478
Q ss_pred EEEEecCCCCCHHHHHHHHHHHH
Q 030225 131 FLETSAKSAHNVNELFYEIAKRL 153 (181)
Q Consensus 131 ~~~~Sa~~~~gi~~~~~~l~~~~ 153 (181)
++++||++|.|+++++++|.+.+
T Consensus 164 v~~~Sa~~g~gi~~l~~~l~~~l 186 (189)
T cd00881 164 IVPGSALTGIGVEELLEAIVEHL 186 (189)
T ss_pred EEEEecccCcCHHHHHHHHHhhC
Confidence 89999999999999999998875
No 157
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.89 E-value=8e-22 Score=156.52 Aligned_cols=144 Identities=19% Similarity=0.187 Sum_probs=104.8
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhcc------chhhc--cCCcEEEEEE
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSL------APMYY--RGAAAAVVVY 72 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~------~~~~~--~~~d~~i~v~ 72 (181)
||||||||+|+|.+........+.++.+.....+..++. ++.+||+||+.++... ...++ .++|++++|+
T Consensus 3 pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~--~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~Vv 80 (591)
T TIGR00437 3 PNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGE--DIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVV 80 (591)
T ss_pred CCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCe--EEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEEe
Confidence 799999999999988764444455555554444555543 5789999998766543 23333 4789999999
Q ss_pred ECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHH
Q 030225 73 DITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKR 152 (181)
Q Consensus 73 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~ 152 (181)
|+++.+.. ..+..++.+ .+.|+++++||+|+.+...+. .+...+.+..+++++++||++|+|++++++++.+.
T Consensus 81 Dat~ler~---l~l~~ql~~---~~~PiIIVlNK~Dl~~~~~i~-~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~~~ 153 (591)
T TIGR00437 81 DASNLERN---LYLTLQLLE---LGIPMILALNLVDEAEKKGIR-IDEEKLEERLGVPVVPTSATEGRGIERLKDAIRKA 153 (591)
T ss_pred cCCcchhh---HHHHHHHHh---cCCCEEEEEehhHHHHhCCCh-hhHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 99875432 222333322 468999999999986544443 34567778889999999999999999999999875
Q ss_pred H
Q 030225 153 L 153 (181)
Q Consensus 153 ~ 153 (181)
+
T Consensus 154 ~ 154 (591)
T TIGR00437 154 I 154 (591)
T ss_pred h
Confidence 4
No 158
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=1.2e-22 Score=133.10 Aligned_cols=151 Identities=24% Similarity=0.294 Sum_probs=112.9
Q ss_pred CCchhHHHHHHhhC---CC----CCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEEC
Q 030225 2 GTGKTSLVLRFVKG---QF----FDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDI 74 (181)
Q Consensus 2 ~~GKttLl~~l~~~---~~----~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~ 74 (181)
++|||||+.++... .+ +....+|+|..... ++-.+..+.+||.+|++..+++|..||..++++|+++|+
T Consensus 27 nAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~----i~v~~~~l~fwdlgGQe~lrSlw~~yY~~~H~ii~viDa 102 (197)
T KOG0076|consen 27 NAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGT----IEVCNAPLSFWDLGGQESLRSLWKKYYWLAHGIIYVIDA 102 (197)
T ss_pred cCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecc----eeeccceeEEEEcCChHHHHHHHHHHHHHhceeEEeecC
Confidence 79999999987531 11 12233555543333 332366889999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHH-HHHHHH---cCCeEEEEecCCCCCHHHHHHHH
Q 030225 75 TSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEG-ELYAQE---NGLSFLETSAKSAHNVNELFYEI 149 (181)
Q Consensus 75 ~~~~s~~~~~~~~~~~~~~~-~~~~p~ivi~nK~D~~~~~~~~~~~~-~~~~~~---~~~~~~~~Sa~~~~gi~~~~~~l 149 (181)
+|++.|++....++.+.... ..++|+++.+||.|+.+..+..+... ...+.. ...++..|||.+|+||++...|+
T Consensus 103 ~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~~e~~~~rd~~~~pvSal~gegv~egi~w~ 182 (197)
T KOG0076|consen 103 TDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGLAELIPRRDNPFQPVSALTGEGVKEGIEWL 182 (197)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhhhhhhcCCccCccccchhhhcccHHHHHHHH
Confidence 99999999877777765543 47899999999999865433222111 111222 24689999999999999999999
Q ss_pred HHHHHhh
Q 030225 150 AKRLAEV 156 (181)
Q Consensus 150 ~~~~~~~ 156 (181)
+..+..+
T Consensus 183 v~~~~kn 189 (197)
T KOG0076|consen 183 VKKLEKN 189 (197)
T ss_pred HHHHhhc
Confidence 9988877
No 159
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.88 E-value=3.2e-21 Score=123.96 Aligned_cols=157 Identities=24% Similarity=0.362 Sum_probs=128.3
Q ss_pred CCchhHHHHHHhhCCCC--CccccceeeeEEEEEEEECCeEEEEEEEeCCChhhh-hccchhhccCCcEEEEEEECCChh
Q 030225 2 GTGKTSLVLRFVKGQFF--DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERY-HSLAPMYYRGAAAAVVVYDITSMD 78 (181)
Q Consensus 2 ~~GKttLl~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-~~~~~~~~~~~d~~i~v~d~~~~~ 78 (181)
++|||++|+.|.-++.. ..+.||+...|.......++..-.+.++||.|...+ ..+-++|++-+|++++|||..|++
T Consensus 19 ~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aDafVLVYs~~d~e 98 (198)
T KOG3883|consen 19 SVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFADAFVLVYSPMDPE 98 (198)
T ss_pred cccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCceEEEEecCCCHH
Confidence 68999999999865543 345577776666655556666667899999998766 556688999999999999999999
Q ss_pred HHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHhhC
Q 030225 79 SFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVN 157 (181)
Q Consensus 79 s~~~~~~~~~~~~~~~-~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~ 157 (181)
||+.+..+-..+.... ...+|+++++||+|+.+.+++..+.+..|++.-.+.++++++.+...+-+.|..|...+.+.+
T Consensus 99 Sf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL~epf~~l~~rl~~pq 178 (198)
T KOG3883|consen 99 SFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLWEVTAMDRPSLYEPFTYLASRLHQPQ 178 (198)
T ss_pred HHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHhhhheeEEEEEeccchhhhhHHHHHHHhccCCc
Confidence 9988765555554432 367999999999999988999999999999998999999999999999999999987766544
Q ss_pred C
Q 030225 158 P 158 (181)
Q Consensus 158 ~ 158 (181)
+
T Consensus 179 s 179 (198)
T KOG3883|consen 179 S 179 (198)
T ss_pred c
Confidence 4
No 160
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.88 E-value=5.7e-22 Score=127.70 Aligned_cols=158 Identities=23% Similarity=0.439 Sum_probs=136.8
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+..|||||+-++.++.+.+++..+.|+.+-.+.+.+.+..+.|.|||.+|++++..+.+....++-+++|+||++.+..+
T Consensus 29 ~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlFmFDLt~r~TL 108 (205)
T KOG1673|consen 29 AQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAILFMFDLTRRSTL 108 (205)
T ss_pred cccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEEEEEecCchHHH
Confidence 46899999999999999888889999999899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEEeCCCCccc-----ccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHh
Q 030225 81 ERAKKWVQELQRQGNPNLIMFLVANKVDLEEK-----RKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAE 155 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~-----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~ 155 (181)
..+..|+.+.+.......| ++||+|.|+--. .+....+++.+++..+.+++.+|+....|++.+|..+..++..
T Consensus 109 nSi~~WY~QAr~~NktAiP-ilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv~KIFK~vlAklFn 187 (205)
T KOG1673|consen 109 NSIKEWYRQARGLNKTAIP-ILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSINVQKIFKIVLAKLFN 187 (205)
T ss_pred HHHHHHHHHHhccCCccce-EEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccccccHHHHHHHHHHHHhC
Confidence 9999999999887655555 556999996321 1122245678899999999999999999999999999988877
Q ss_pred hCCC
Q 030225 156 VNPS 159 (181)
Q Consensus 156 ~~~~ 159 (181)
....
T Consensus 188 L~~t 191 (205)
T KOG1673|consen 188 LPWT 191 (205)
T ss_pred Ccee
Confidence 6553
No 161
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.88 E-value=5.5e-22 Score=127.59 Aligned_cols=107 Identities=30% Similarity=0.563 Sum_probs=82.9
Q ss_pred CCCchhHHHHHHhhCCCC--CccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChh
Q 030225 1 MGTGKTSLVLRFVKGQFF--DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMD 78 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~ 78 (181)
+|||||||+++|++..+. ....++.+.++.............+.+||++|++.+...+..++.++|++++|||+++++
T Consensus 8 ~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv~D~s~~~ 87 (119)
T PF08477_consen 8 SGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILVYDLSDPE 87 (119)
T ss_dssp TTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEEEECCGHH
T ss_pred CCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEEEcCCChH
Confidence 699999999999998876 223344445555566677777777999999999988888888899999999999999999
Q ss_pred HHHHHHH---HHHHHHHhCCCCceEEEEEeCCC
Q 030225 79 SFERAKK---WVQELQRQGNPNLIMFLVANKVD 108 (181)
Q Consensus 79 s~~~~~~---~~~~~~~~~~~~~p~ivi~nK~D 108 (181)
+++++.. |+..+.... .+.|+++|+||.|
T Consensus 88 s~~~~~~~~~~l~~~~~~~-~~~piilv~nK~D 119 (119)
T PF08477_consen 88 SLEYLSQLLKWLKNIRKRD-KNIPIILVGNKSD 119 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHS-SCSEEEEEEE-TC
T ss_pred HHHHHHHHHHHHHHHHccC-CCCCEEEEEeccC
Confidence 9998754 455555443 5699999999998
No 162
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.88 E-value=1.3e-21 Score=150.55 Aligned_cols=142 Identities=19% Similarity=0.207 Sum_probs=104.2
Q ss_pred CCCchhHHHHHHhhCCC--CCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhcc--------chhhccCCcEEEE
Q 030225 1 MGTGKTSLVLRFVKGQF--FDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSL--------APMYYRGAAAAVV 70 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~~~~~d~~i~ 70 (181)
||||||||+|+|++... ...+ +.++.++....+.+++. .+.+|||||...+... ...+++++|++++
T Consensus 212 ~nvGKSSLiN~L~~~~~aivs~~-pgtTrd~~~~~i~~~g~--~v~l~DTaG~~~~~~~ie~~gi~~~~~~~~~aD~il~ 288 (442)
T TIGR00450 212 PNVGKSSLLNALLKQDRAIVSDI-KGTTRDVVEGDFELNGI--LIKLLDTAGIREHADFVERLGIEKSFKAIKQADLVIY 288 (442)
T ss_pred CCCcHHHHHHHHhCCCCcccCCC-CCcEEEEEEEEEEECCE--EEEEeeCCCcccchhHHHHHHHHHHHHHHhhCCEEEE
Confidence 79999999999998653 2322 44444555555566654 5689999997543321 2457889999999
Q ss_pred EEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHH
Q 030225 71 VYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIA 150 (181)
Q Consensus 71 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~ 150 (181)
|+|++++.+++.. |+..+.. .++|+++|+||+|+... +...+.+..+.+++++||++ .|++++|+.|.
T Consensus 289 V~D~s~~~s~~~~--~l~~~~~---~~~piIlV~NK~Dl~~~------~~~~~~~~~~~~~~~vSak~-~gI~~~~~~L~ 356 (442)
T TIGR00450 289 VLDASQPLTKDDF--LIIDLNK---SKKPFILVLNKIDLKIN------SLEFFVSSKVLNSSNLSAKQ-LKIKALVDLLT 356 (442)
T ss_pred EEECCCCCChhHH--HHHHHhh---CCCCEEEEEECccCCCc------chhhhhhhcCCceEEEEEec-CCHHHHHHHHH
Confidence 9999988877664 6655532 46799999999998542 12344566778899999998 69999999999
Q ss_pred HHHHhhC
Q 030225 151 KRLAEVN 157 (181)
Q Consensus 151 ~~~~~~~ 157 (181)
+.+.+.-
T Consensus 357 ~~i~~~~ 363 (442)
T TIGR00450 357 QKINAFY 363 (442)
T ss_pred HHHHHHh
Confidence 9887753
No 163
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.88 E-value=6.8e-22 Score=154.05 Aligned_cols=145 Identities=26% Similarity=0.233 Sum_probs=97.3
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhh--------hhccchhhccCCcEEEEEE
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER--------YHSLAPMYYRGAAAAVVVY 72 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~~~~~d~~i~v~ 72 (181)
||||||||+|+|++...... .++.|+++......+......+.+|||||... +...+..+++++|++|+|+
T Consensus 47 ~nvGKSSL~nrl~~~~~~~v-~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~aD~il~Vv 125 (472)
T PRK03003 47 PNVGKSTLVNRILGRREAVV-EDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAMRTADAVLFVV 125 (472)
T ss_pred CCCCHHHHHHHHhCcCcccc-cCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHHHhCCEEEEEE
Confidence 79999999999998765321 23444433333332222334678999999652 3334556788999999999
Q ss_pred ECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCC-eEEEEecCCCCCHHHHHHHHHH
Q 030225 73 DITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGL-SFLETSAKSAHNVNELFYEIAK 151 (181)
Q Consensus 73 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~~~~~l~~ 151 (181)
|++++.++.. ..+...+.. .++|+++|+||+|+.... .+....+. .++ ..+++||++|.|+.++|++|++
T Consensus 126 D~~~~~s~~~-~~i~~~l~~---~~~piilV~NK~Dl~~~~---~~~~~~~~--~g~~~~~~iSA~~g~gi~eL~~~i~~ 196 (472)
T PRK03003 126 DATVGATATD-EAVARVLRR---SGKPVILAANKVDDERGE---ADAAALWS--LGLGEPHPVSALHGRGVGDLLDAVLA 196 (472)
T ss_pred ECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECccCCccc---hhhHHHHh--cCCCCeEEEEcCCCCCcHHHHHHHHh
Confidence 9998755432 233344432 468999999999985421 12222222 343 3579999999999999999998
Q ss_pred HHHh
Q 030225 152 RLAE 155 (181)
Q Consensus 152 ~~~~ 155 (181)
.+.+
T Consensus 197 ~l~~ 200 (472)
T PRK03003 197 ALPE 200 (472)
T ss_pred hccc
Confidence 8755
No 164
>PRK11058 GTPase HflX; Provisional
Probab=99.88 E-value=1.6e-21 Score=149.31 Aligned_cols=150 Identities=19% Similarity=0.198 Sum_probs=102.3
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhh--hccch------hhccCCcEEEEEE
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERY--HSLAP------MYYRGAAAAVVVY 72 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~--~~~~~------~~~~~~d~~i~v~ 72 (181)
||||||||+|+|.+........+..+.+.....+...+. ..+.+|||+|.... ..++. ..+.++|++++|+
T Consensus 206 ~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ADlIL~Vv 284 (426)
T PRK11058 206 TNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV-GETVLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVV 284 (426)
T ss_pred CCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC-CeEEEEecCcccccCCHHHHHHHHHHHHHhhcCCEEEEEE
Confidence 799999999999987654333333334443444444442 25679999997321 22222 3368899999999
Q ss_pred ECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCe-EEEEecCCCCCHHHHHHHHHH
Q 030225 73 DITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLS-FLETSAKSAHNVNELFYEIAK 151 (181)
Q Consensus 73 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~~~~~~l~~ 151 (181)
|++++.+++.+..|...+......+.|+++|+||+|+..... .... ....+.+ ++++||++|+|+++++++|.+
T Consensus 285 DaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~---~~~~--~~~~~~~~~v~ISAktG~GIdeL~e~I~~ 359 (426)
T PRK11058 285 DAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFE---PRID--RDEENKPIRVWLSAQTGAGIPLLFQALTE 359 (426)
T ss_pred eCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchh---HHHH--HHhcCCCceEEEeCCCCCCHHHHHHHHHH
Confidence 999988877776555555444445789999999999854211 1111 1123555 588999999999999999999
Q ss_pred HHHhh
Q 030225 152 RLAEV 156 (181)
Q Consensus 152 ~~~~~ 156 (181)
.+...
T Consensus 360 ~l~~~ 364 (426)
T PRK11058 360 RLSGE 364 (426)
T ss_pred Hhhhc
Confidence 88543
No 165
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.88 E-value=7.7e-22 Score=132.90 Aligned_cols=133 Identities=18% Similarity=0.192 Sum_probs=92.9
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChh-----hhhccchhhccCCcEEEEEEECC
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE-----RYHSLAPMYYRGAAAAVVVYDIT 75 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~-----~~~~~~~~~~~~~d~~i~v~d~~ 75 (181)
||+|||||+++|.+... . ...+.++. +... .+||+||.. .+..+ ...++++|++++|+|++
T Consensus 10 ~~~GKstl~~~l~~~~~-~-~~~~~~v~-------~~~~----~~iDtpG~~~~~~~~~~~~-~~~~~~ad~il~v~d~~ 75 (158)
T PRK15467 10 VGAGKTTLFNALQGNYT-L-ARKTQAVE-------FNDK----GDIDTPGEYFSHPRWYHAL-ITTLQDVDMLIYVHGAN 75 (158)
T ss_pred CCCCHHHHHHHHcCCCc-c-CccceEEE-------ECCC----CcccCCccccCCHHHHHHH-HHHHhcCCEEEEEEeCC
Confidence 79999999999876432 1 12333222 2222 279999972 22222 23478999999999999
Q ss_pred ChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCC--eEEEEecCCCCCHHHHHHHHHHHH
Q 030225 76 SMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGL--SFLETSAKSAHNVNELFYEIAKRL 153 (181)
Q Consensus 76 ~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~--~~~~~Sa~~~~gi~~~~~~l~~~~ 153 (181)
+.+++. ..|+..+ ..++|+++++||+|+.+ ...+....++.+.++ +++++||++++|++++|+++.+.+
T Consensus 76 ~~~s~~--~~~~~~~----~~~~~ii~v~nK~Dl~~---~~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~~l~~~~ 146 (158)
T PRK15467 76 DPESRL--PAGLLDI----GVSKRQIAVISKTDMPD---ADVAATRKLLLETGFEEPIFELNSHDPQSVQQLVDYLASLT 146 (158)
T ss_pred Cccccc--CHHHHhc----cCCCCeEEEEEccccCc---ccHHHHHHHHHHcCCCCCEEEEECCCccCHHHHHHHHHHhc
Confidence 877652 2343332 24678999999999854 234556677777774 899999999999999999998877
Q ss_pred Hhh
Q 030225 154 AEV 156 (181)
Q Consensus 154 ~~~ 156 (181)
.+.
T Consensus 147 ~~~ 149 (158)
T PRK15467 147 KQE 149 (158)
T ss_pred hhh
Confidence 554
No 166
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.88 E-value=1.1e-21 Score=136.37 Aligned_cols=150 Identities=21% Similarity=0.142 Sum_probs=94.1
Q ss_pred CCCchhHHHHHHhhC----CCCC---cccc--ceeeeEEEEEEE----------ECCeEEEEEEEeCCChhhhhccchhh
Q 030225 1 MGTGKTSLVLRFVKG----QFFD---FQES--TIGAAFFTQVLS----------LNEVTIKFDIWDTAGQERYHSLAPMY 61 (181)
Q Consensus 1 ~~~GKttLl~~l~~~----~~~~---~~~~--t~~~~~~~~~~~----------~~~~~~~~~i~D~~G~~~~~~~~~~~ 61 (181)
+|+|||||+++|+.. .+.. ...+ |++..+....+. ..+..+.+.+||+||+..+.......
T Consensus 9 ~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~ 88 (192)
T cd01889 9 VDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHASLIRTIIGG 88 (192)
T ss_pred CCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHHHHHHHHHH
Confidence 689999999999973 1111 1112 223222222222 12346789999999987654433344
Q ss_pred ccCCcEEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccc--CCHHHHHHHHH-------HcCCeEE
Q 030225 62 YRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRK--VKNEEGELYAQ-------ENGLSFL 132 (181)
Q Consensus 62 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~--~~~~~~~~~~~-------~~~~~~~ 132 (181)
...+|++++|+|+++.........+. +... .+.|+++++||+|+..... ...++...... ..+++++
T Consensus 89 ~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~--~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vi 164 (192)
T cd01889 89 AQIIDLMLLVVDATKGIQTQTAECLV--IGEI--LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKTRFKNSPII 164 (192)
T ss_pred HhhCCEEEEEEECCCCccHHHHHHHH--HHHH--cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhcCcCCCCEE
Confidence 56789999999998754333322221 1222 2569999999999863221 11222222111 1357899
Q ss_pred EEecCCCCCHHHHHHHHHHHHH
Q 030225 133 ETSAKSAHNVNELFYEIAKRLA 154 (181)
Q Consensus 133 ~~Sa~~~~gi~~~~~~l~~~~~ 154 (181)
++||++++|+++++++|.+++.
T Consensus 165 ~iSa~~g~gi~~L~~~l~~~~~ 186 (192)
T cd01889 165 PVSAKPGGGEAELGKDLNNLIV 186 (192)
T ss_pred EEeccCCCCHHHHHHHHHhccc
Confidence 9999999999999999988764
No 167
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.88 E-value=3.5e-21 Score=148.55 Aligned_cols=155 Identities=19% Similarity=0.185 Sum_probs=101.7
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhh----hhcc---chhhccCCcEEEEEEE
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER----YHSL---APMYYRGAAAAVVVYD 73 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----~~~~---~~~~~~~~d~~i~v~d 73 (181)
||||||||+++|.+........| +++.......+.....+|.+||+||... ...+ ....+..+|++|+|+|
T Consensus 168 PNAGKSTLln~Ls~akpkIadyp--fTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhieradvLv~VVD 245 (500)
T PRK12296 168 PSAGKSSLISALSAAKPKIADYP--FTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIERCAVLVHVVD 245 (500)
T ss_pred CCCCHHHHHHHHhcCCccccccC--cccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHHHhcCEEEEEEC
Confidence 89999999999998654322112 2222223322333335789999999521 1111 1224678999999999
Q ss_pred CCCh----hHHHHHHHHHHHHHHhC-----------CCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCC
Q 030225 74 ITSM----DSFERAKKWVQELQRQG-----------NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKS 138 (181)
Q Consensus 74 ~~~~----~s~~~~~~~~~~~~~~~-----------~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 138 (181)
+++. +.+..+..|...+..+. ...+|.++|+||+|+.+..... +.........+++++++||++
T Consensus 246 ~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~-e~l~~~l~~~g~~Vf~ISA~t 324 (500)
T PRK12296 246 CATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELA-EFVRPELEARGWPVFEVSAAS 324 (500)
T ss_pred CcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHH-HHHHHHHHHcCCeEEEEECCC
Confidence 9853 34455554544443332 2468999999999986543321 222333445678999999999
Q ss_pred CCCHHHHHHHHHHHHHhhCC
Q 030225 139 AHNVNELFYEIAKRLAEVNP 158 (181)
Q Consensus 139 ~~gi~~~~~~l~~~~~~~~~ 158 (181)
++|+++++++|.+.+.....
T Consensus 325 geGLdEL~~~L~ell~~~r~ 344 (500)
T PRK12296 325 REGLRELSFALAELVEEARA 344 (500)
T ss_pred CCCHHHHHHHHHHHHHhhhc
Confidence 99999999999998877543
No 168
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.88 E-value=1.4e-21 Score=131.23 Aligned_cols=138 Identities=18% Similarity=0.130 Sum_probs=96.9
Q ss_pred CCCchhHHHHHHhhCCCCC-ccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhcc--------chhhccCCcEEEEE
Q 030225 1 MGTGKTSLVLRFVKGQFFD-FQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSL--------APMYYRGAAAAVVV 71 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~~~~~d~~i~v 71 (181)
||+|||||++++.+..... ...+.++.+.....+..+ ..++.+||+||...+... ...++..+|++++|
T Consensus 10 ~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~v~v 87 (157)
T cd04164 10 PNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIG--GIPVRLIDTAGIRETEDEIEKIGIERAREAIEEADLVLFV 87 (157)
T ss_pred CCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeC--CEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhCCEEEEE
Confidence 6999999999999876422 112333333333333333 457889999997543221 23467789999999
Q ss_pred EECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHH
Q 030225 72 YDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAK 151 (181)
Q Consensus 72 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 151 (181)
+|++++.+......+.. ....|+++++||+|+.+.... .....+.+++++||+++.|+++++++|.+
T Consensus 88 ~d~~~~~~~~~~~~~~~------~~~~~vi~v~nK~D~~~~~~~-------~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 154 (157)
T cd04164 88 IDASRGLDEEDLEILEL------PADKPIIVVLNKSDLLPDSEL-------LSLLAGKPIIAISAKTGEGLDELKEALLE 154 (157)
T ss_pred EECCCCCCHHHHHHHHh------hcCCCEEEEEEchhcCCcccc-------ccccCCCceEEEECCCCCCHHHHHHHHHH
Confidence 99998777665544322 357899999999998654332 33444678999999999999999999987
Q ss_pred HH
Q 030225 152 RL 153 (181)
Q Consensus 152 ~~ 153 (181)
.+
T Consensus 155 ~~ 156 (157)
T cd04164 155 LA 156 (157)
T ss_pred hh
Confidence 54
No 169
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.87 E-value=5.8e-21 Score=151.05 Aligned_cols=144 Identities=19% Similarity=0.173 Sum_probs=103.4
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+++|||||+++|.+..+.....+.++.++....+..++.. .+.||||||++.|..++...+..+|++|+|+|+++....
T Consensus 96 vd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~~-~i~~iDTPGhe~F~~~r~rga~~aDiaILVVda~dgv~~ 174 (587)
T TIGR00487 96 VDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDGK-MITFLDTPGHEAFTSMRARGAKVTDIVVLVVAADDGVMP 174 (587)
T ss_pred CCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCCc-EEEEEECCCCcchhhHHHhhhccCCEEEEEEECCCCCCH
Confidence 5899999999999988776655555555555555554332 788999999999999998899999999999998864221
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcC---------CeEEEEecCCCCCHHHHHHHHHH
Q 030225 81 ERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENG---------LSFLETSAKSAHNVNELFYEIAK 151 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~---------~~~~~~Sa~~~~gi~~~~~~l~~ 151 (181)
+. ...+.... ..+.|+++++||+|+.+. ..++....+...+ .+++++||++|+|+.+++++|..
T Consensus 175 qT-~e~i~~~~---~~~vPiIVviNKiDl~~~---~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeGI~eLl~~I~~ 247 (587)
T TIGR00487 175 QT-IEAISHAK---AANVPIIVAINKIDKPEA---NPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGDGIDELLDMILL 247 (587)
T ss_pred hH-HHHHHHHH---HcCCCEEEEEECcccccC---CHHHHHHHHHHhhhhHHhcCCCceEEEEECCCCCChHHHHHhhhh
Confidence 11 12222222 246899999999998542 2233333333222 47999999999999999999975
Q ss_pred H
Q 030225 152 R 152 (181)
Q Consensus 152 ~ 152 (181)
.
T Consensus 248 ~ 248 (587)
T TIGR00487 248 Q 248 (587)
T ss_pred h
Confidence 3
No 170
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.87 E-value=2.3e-21 Score=151.10 Aligned_cols=152 Identities=22% Similarity=0.184 Sum_probs=102.7
Q ss_pred CCCchhHHHHHHhhCCCC-CccccceeeeEEEEEEEECCeEEEEEEEeCCCh----------hhhhccc-hhhccCCcEE
Q 030225 1 MGTGKTSLVLRFVKGQFF-DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ----------ERYHSLA-PMYYRGAAAA 68 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~----------~~~~~~~-~~~~~~~d~~ 68 (181)
||||||||+++|++.... ....++++.+.....+..++. .+.+|||||. +.+..+. ..+++++|++
T Consensus 220 ~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~--~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~v 297 (472)
T PRK03003 220 PNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGK--TWRFVDTAGLRRRVKQASGHEYYASLRTHAAIEAAEVA 297 (472)
T ss_pred CCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCE--EEEEEECCCccccccccchHHHHHHHHHHHHHhcCCEE
Confidence 799999999999987653 223344444444445556655 4569999995 2233222 3457899999
Q ss_pred EEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccc--CCHHHHHH-HHHHcCCeEEEEecCCCCCHHHH
Q 030225 69 VVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRK--VKNEEGEL-YAQENGLSFLETSAKSAHNVNEL 145 (181)
Q Consensus 69 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~--~~~~~~~~-~~~~~~~~~~~~Sa~~~~gi~~~ 145 (181)
++|+|++++.++..+. ++..+.. .+.|+++++||+|+.+... ....+... +.....++++++||++|.|++++
T Consensus 298 ilV~Da~~~~s~~~~~-~~~~~~~---~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~SAk~g~gv~~l 373 (472)
T PRK03003 298 VVLIDASEPISEQDQR-VLSMVIE---AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNISAKTGRAVDKL 373 (472)
T ss_pred EEEEeCCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEECCCCCCHHHH
Confidence 9999999987777653 4444433 4689999999999964211 01111111 12112368999999999999999
Q ss_pred HHHHHHHHHhhCC
Q 030225 146 FYEIAKRLAEVNP 158 (181)
Q Consensus 146 ~~~l~~~~~~~~~ 158 (181)
|+.+.+.+.+...
T Consensus 374 f~~i~~~~~~~~~ 386 (472)
T PRK03003 374 VPALETALESWDT 386 (472)
T ss_pred HHHHHHHHHHhcc
Confidence 9999987765443
No 171
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.87 E-value=8.9e-22 Score=152.10 Aligned_cols=139 Identities=20% Similarity=0.195 Sum_probs=100.8
Q ss_pred CCCchhHHHHHHhhCCCC-CccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhcc--------chhhccCCcEEEEE
Q 030225 1 MGTGKTSLVLRFVKGQFF-DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSL--------APMYYRGAAAAVVV 71 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~~~~~d~~i~v 71 (181)
||+|||||+|+|.+.... ....+.++.++....+..++ ..+.+|||||...+... ...++.++|++++|
T Consensus 224 ~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~~~aD~il~V 301 (449)
T PRK05291 224 PNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG--IPLRLIDTAGIRETDDEVEKIGIERSREAIEEADLVLLV 301 (449)
T ss_pred CCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC--eEEEEEeCCCCCCCccHHHHHHHHHHHHHHHhCCEEEEE
Confidence 799999999999987642 22233334444444555555 46789999997644321 23467899999999
Q ss_pred EECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHH
Q 030225 72 YDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAK 151 (181)
Q Consensus 72 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 151 (181)
+|++++.+++....|.. ..+.|+++|+||+|+....... ...+.+++++||++|.|+++++++|.+
T Consensus 302 vD~s~~~s~~~~~~l~~------~~~~piiiV~NK~DL~~~~~~~--------~~~~~~~i~iSAktg~GI~~L~~~L~~ 367 (449)
T PRK05291 302 LDASEPLTEEDDEILEE------LKDKPVIVVLNKADLTGEIDLE--------EENGKPVIRISAKTGEGIDELREAIKE 367 (449)
T ss_pred ecCCCCCChhHHHHHHh------cCCCCcEEEEEhhhccccchhh--------hccCCceEEEEeeCCCCHHHHHHHHHH
Confidence 99998877765544432 3568999999999986432221 334578999999999999999999999
Q ss_pred HHHh
Q 030225 152 RLAE 155 (181)
Q Consensus 152 ~~~~ 155 (181)
.+..
T Consensus 368 ~l~~ 371 (449)
T PRK05291 368 LAFG 371 (449)
T ss_pred HHhh
Confidence 8865
No 172
>PRK00089 era GTPase Era; Reviewed
Probab=99.87 E-value=2.1e-21 Score=143.17 Aligned_cols=152 Identities=20% Similarity=0.144 Sum_probs=99.0
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhh--------ccchhhccCCcEEEEEE
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYH--------SLAPMYYRGAAAAVVVY 72 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~--------~~~~~~~~~~d~~i~v~ 72 (181)
||||||||+|+|++........ ...++.............++.+|||||..... ......+.++|++++|+
T Consensus 14 pn~GKSTLin~L~g~~~~~vs~-~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~~D~il~vv 92 (292)
T PRK00089 14 PNVGKSTLLNALVGQKISIVSP-KPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLKDVDLVLFVV 92 (292)
T ss_pred CCCCHHHHHHHHhCCceeecCC-CCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHHHhcCCEEEEEE
Confidence 7999999999999887643321 12222212111122233688999999964321 22334678999999999
Q ss_pred ECCChhHHHHH-HHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcC-CeEEEEecCCCCCHHHHHHHHH
Q 030225 73 DITSMDSFERA-KKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYEIA 150 (181)
Q Consensus 73 d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~~~~~l~ 150 (181)
|+++. +... ...+..+. ..+.|+++++||+|+.............+.+..+ ..++++||+++.|+++++++|.
T Consensus 93 d~~~~--~~~~~~~i~~~l~---~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~gv~~L~~~L~ 167 (292)
T PRK00089 93 DADEK--IGPGDEFILEKLK---KVKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGDNVDELLDVIA 167 (292)
T ss_pred eCCCC--CChhHHHHHHHHh---hcCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCCCHHHHHHHHH
Confidence 99872 2222 22222332 2368999999999996433333334445554444 6799999999999999999999
Q ss_pred HHHHhhCC
Q 030225 151 KRLAEVNP 158 (181)
Q Consensus 151 ~~~~~~~~ 158 (181)
+.+.+..+
T Consensus 168 ~~l~~~~~ 175 (292)
T PRK00089 168 KYLPEGPP 175 (292)
T ss_pred HhCCCCCC
Confidence 98866543
No 173
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.87 E-value=9.2e-21 Score=143.62 Aligned_cols=156 Identities=19% Similarity=0.171 Sum_probs=104.0
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhh----ccc---hhhccCCcEEEEEEE
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYH----SLA---PMYYRGAAAAVVVYD 73 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~----~~~---~~~~~~~d~~i~v~d 73 (181)
||||||||+|+|.+.+......|.++.....-.+... ....+.++|+||...-. .+. ...++.+|++++|+|
T Consensus 168 PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~-~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radvlL~VVD 246 (390)
T PRK12298 168 PNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVD-DERSFVVADIPGLIEGASEGAGLGIRFLKHLERCRVLLHLID 246 (390)
T ss_pred CCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeC-CCcEEEEEeCCCccccccchhhHHHHHHHHHHhCCEEEEEec
Confidence 8999999999999866422221222211112222332 22358899999964211 111 234788999999999
Q ss_pred CC---ChhHHHHHHHHHHHHHHhCC--CCceEEEEEeCCCCcccccCCHHHHHHHHHHcC--CeEEEEecCCCCCHHHHH
Q 030225 74 IT---SMDSFERAKKWVQELQRQGN--PNLIMFLVANKVDLEEKRKVKNEEGELYAQENG--LSFLETSAKSAHNVNELF 146 (181)
Q Consensus 74 ~~---~~~s~~~~~~~~~~~~~~~~--~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~~~ 146 (181)
++ +.+.++....|++.+..... ..+|.++|+||+|+.....+ .+....+.+..+ .+++.+||+++.|+++++
T Consensus 247 ~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el-~~~l~~l~~~~~~~~~Vi~ISA~tg~GIdeLl 325 (390)
T PRK12298 247 IAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEA-EERAKAIVEALGWEGPVYLISAASGLGVKELC 325 (390)
T ss_pred cCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHH-HHHHHHHHHHhCCCCCEEEEECCCCcCHHHHH
Confidence 98 45667777777777766431 46899999999998643322 233344444444 478999999999999999
Q ss_pred HHHHHHHHhhCC
Q 030225 147 YEIAKRLAEVNP 158 (181)
Q Consensus 147 ~~l~~~~~~~~~ 158 (181)
++|.+.+.+..+
T Consensus 326 ~~I~~~L~~~~~ 337 (390)
T PRK12298 326 WDLMTFIEENPR 337 (390)
T ss_pred HHHHHHhhhCcc
Confidence 999998877543
No 174
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.87 E-value=6e-22 Score=125.67 Aligned_cols=147 Identities=20% Similarity=0.214 Sum_probs=111.1
Q ss_pred CCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHHH
Q 030225 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFE 81 (181)
Q Consensus 2 ~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~ 81 (181)
|+||||||..|.+..... ..||.|..... +..+ +.+++++||++|+...+..|..||.+.|++|||+|.+|...|+
T Consensus 27 nAGKTT~LKqL~sED~~h-ltpT~GFn~k~--v~~~-g~f~LnvwDiGGqr~IRpyWsNYyenvd~lIyVIDS~D~krfe 102 (185)
T KOG0074|consen 27 NAGKTTFLKQLKSEDPRH-LTPTNGFNTKK--VEYD-GTFHLNVWDIGGQRGIRPYWSNYYENVDGLIYVIDSTDEKRFE 102 (185)
T ss_pred CCcchhHHHHHccCChhh-ccccCCcceEE--Eeec-CcEEEEEEecCCccccchhhhhhhhccceEEEEEeCCchHhHH
Confidence 799999999998776544 34777754433 3333 4479999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH-hCCCCceEEEEEeCCCCcccccCCHHHH---HHHHHHcCCeEEEEecCCCCCHHHHHHHHHHH
Q 030225 82 RAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEG---ELYAQENGLSFLETSAKSAHNVNELFYEIAKR 152 (181)
Q Consensus 82 ~~~~~~~~~~~-~~~~~~p~ivi~nK~D~~~~~~~~~~~~---~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~ 152 (181)
++-..+-++.+ ......|+++.+||.|+.....+..... ..-.+.+.+.+.++||.+++|+.+..+|+...
T Consensus 103 E~~~el~ELleeeKl~~vpvlIfankQdlltaa~~eeia~klnl~~lrdRswhIq~csals~eg~~dg~~wv~sn 177 (185)
T KOG0074|consen 103 EISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVEEIALKLNLAGLRDRSWHIQECSALSLEGSTDGSDWVQSN 177 (185)
T ss_pred HHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchHHHHHhcchhhhhhceEEeeeCccccccCccCcchhhhcC
Confidence 98666666555 3347899999999999865333221111 11222334678999999999999999998653
No 175
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.87 E-value=6.2e-21 Score=151.35 Aligned_cols=149 Identities=19% Similarity=0.199 Sum_probs=109.5
Q ss_pred CCCchhHHHHHHhhC---CCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCCh
Q 030225 1 MGTGKTSLVLRFVKG---QFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSM 77 (181)
Q Consensus 1 ~~~GKttLl~~l~~~---~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 77 (181)
+++|||||+++|.+. .+.+++.++++.+.....+..++ ..+.+||+||++.|...+...+.++|++++|+|++++
T Consensus 9 ~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aILVVDa~~G 86 (581)
T TIGR00475 9 VDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAALLVVDADEG 86 (581)
T ss_pred CCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCC
Confidence 589999999999963 34455556666666555555555 6889999999999988888889999999999999873
Q ss_pred ---hHHHHHHHHHHHHHHhCCCCce-EEEEEeCCCCcccccC--CHHHHHHHHHHc----CCeEEEEecCCCCCHHHHHH
Q 030225 78 ---DSFERAKKWVQELQRQGNPNLI-MFLVANKVDLEEKRKV--KNEEGELYAQEN----GLSFLETSAKSAHNVNELFY 147 (181)
Q Consensus 78 ---~s~~~~~~~~~~~~~~~~~~~p-~ivi~nK~D~~~~~~~--~~~~~~~~~~~~----~~~~~~~Sa~~~~gi~~~~~ 147 (181)
.+.+. +..+.. .+.| +++++||+|+.+.... ..++...++... +++++++||++|+|++++++
T Consensus 87 ~~~qT~eh----l~il~~---lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~GI~eL~~ 159 (581)
T TIGR00475 87 VMTQTGEH----LAVLDL---LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTGQGIGELKK 159 (581)
T ss_pred CcHHHHHH----HHHHHH---cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCCCCchhHHH
Confidence 33332 322322 2456 9999999999653321 223444555544 47899999999999999999
Q ss_pred HHHHHHHhhCC
Q 030225 148 EIAKRLAEVNP 158 (181)
Q Consensus 148 ~l~~~~~~~~~ 158 (181)
+|.+.+....+
T Consensus 160 ~L~~l~~~~~~ 170 (581)
T TIGR00475 160 ELKNLLESLDI 170 (581)
T ss_pred HHHHHHHhCCC
Confidence 99887766543
No 176
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.87 E-value=6.6e-21 Score=147.45 Aligned_cols=148 Identities=20% Similarity=0.159 Sum_probs=96.8
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEE--EEEEECCeEEEEEEEeCCChhhhhcc-----------chhhccCCcE
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFT--QVLSLNEVTIKFDIWDTAGQERYHSL-----------APMYYRGAAA 67 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~--~~~~~~~~~~~~~i~D~~G~~~~~~~-----------~~~~~~~~d~ 67 (181)
||+|||||+++|++....... +..|++... ..+..++. .+.+|||||...+... ...+++.+|+
T Consensus 181 ~~~GKSsLin~l~~~~~~~~~-~~~gtt~~~~~~~~~~~~~--~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~ 257 (429)
T TIGR03594 181 PNVGKSTLVNALLGEERVIVS-DIAGTTRDSIDIPFERNGK--KYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADV 257 (429)
T ss_pred CCCCHHHHHHHHHCCCeeecC-CCCCceECcEeEEEEECCc--EEEEEECCCccccccchhhHHHHHHHHHHHHHHhCCE
Confidence 799999999999987632211 222333333 23334443 6789999996443221 1246789999
Q ss_pred EEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHH-H----cCCeEEEEecCCCCCH
Q 030225 68 AVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQ-E----NGLSFLETSAKSAHNV 142 (181)
Q Consensus 68 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~-~----~~~~~~~~Sa~~~~gi 142 (181)
+++|+|++++.+.... .++..+.. .+.|+++++||+|+.+... ..++...... . .+++++++||++|.|+
T Consensus 258 ~ilV~D~~~~~~~~~~-~~~~~~~~---~~~~iiiv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~vi~~SA~~g~~v 332 (429)
T TIGR03594 258 VLLVLDATEGITEQDL-RIAGLILE---AGKALVIVVNKWDLVKDEK-TREEFKKELRRKLPFLDFAPIVFISALTGQGV 332 (429)
T ss_pred EEEEEECCCCccHHHH-HHHHHHHH---cCCcEEEEEECcccCCCHH-HHHHHHHHHHHhcccCCCCceEEEeCCCCCCH
Confidence 9999999987665543 23333333 3689999999999862111 1122222222 1 2478999999999999
Q ss_pred HHHHHHHHHHHHhh
Q 030225 143 NELFYEIAKRLAEV 156 (181)
Q Consensus 143 ~~~~~~l~~~~~~~ 156 (181)
+++|+++...+.+.
T Consensus 333 ~~l~~~i~~~~~~~ 346 (429)
T TIGR03594 333 DKLLDAIDEVYENA 346 (429)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999877654
No 177
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.86 E-value=6.2e-21 Score=133.57 Aligned_cols=113 Identities=15% Similarity=0.153 Sum_probs=78.1
Q ss_pred EEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccC--CHH
Q 030225 41 IKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKV--KNE 118 (181)
Q Consensus 41 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~--~~~ 118 (181)
.++.|||+||+..+...+...+.++|++++|+|++++.........+..+... ..+|+++++||+|+.+.... ..+
T Consensus 83 ~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~--~~~~iiivvNK~Dl~~~~~~~~~~~ 160 (203)
T cd01888 83 RHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM--GLKHIIIVQNKIDLVKEEQALENYE 160 (203)
T ss_pred cEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc--CCCcEEEEEEchhccCHHHHHHHHH
Confidence 67899999999988887777888999999999998742111112222333222 23578999999998642211 112
Q ss_pred HHHHHHHHc---CCeEEEEecCCCCCHHHHHHHHHHHHHh
Q 030225 119 EGELYAQEN---GLSFLETSAKSAHNVNELFYEIAKRLAE 155 (181)
Q Consensus 119 ~~~~~~~~~---~~~~~~~Sa~~~~gi~~~~~~l~~~~~~ 155 (181)
+...+.... +++++++||++|+|+++++++|.+.+.+
T Consensus 161 ~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~ 200 (203)
T cd01888 161 QIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPT 200 (203)
T ss_pred HHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCC
Confidence 233333332 5789999999999999999999875543
No 178
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.86 E-value=1.9e-20 Score=130.39 Aligned_cols=148 Identities=20% Similarity=0.183 Sum_probs=98.4
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCh----------hhhhccchhhccCC---cE
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ----------ERYHSLAPMYYRGA---AA 67 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~----------~~~~~~~~~~~~~~---d~ 67 (181)
+|+|||||+++|++..+...+.++.+.+........ ...+.+||+||. ..+..+...+++.+ ++
T Consensus 33 ~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (196)
T PRK00454 33 SNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQKLIEEYLRTRENLKG 109 (196)
T ss_pred CCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHHHHHHHHHHhCccceE
Confidence 699999999999988765556666665554443333 257889999994 33444445555544 67
Q ss_pred EEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccc--CCHHHHHHHHHHcCCeEEEEecCCCCCHHHH
Q 030225 68 AVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRK--VKNEEGELYAQENGLSFLETSAKSAHNVNEL 145 (181)
Q Consensus 68 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~ 145 (181)
+++++|.+++..... .++...... .+.|+++++||+|+....+ ...++...........++++||+++.|++++
T Consensus 110 ~~~v~d~~~~~~~~~--~~i~~~l~~--~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~Sa~~~~gi~~l 185 (196)
T PRK00454 110 VVLLIDSRHPLKELD--LQMIEWLKE--YGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVILFSSLKKQGIDEL 185 (196)
T ss_pred EEEEEecCCCCCHHH--HHHHHHHHH--cCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceEEEEcCCCCCHHHH
Confidence 888999876543322 111122222 3678999999999854322 1122233444444678999999999999999
Q ss_pred HHHHHHHHHh
Q 030225 146 FYEIAKRLAE 155 (181)
Q Consensus 146 ~~~l~~~~~~ 155 (181)
++.|.+.+.+
T Consensus 186 ~~~i~~~~~~ 195 (196)
T PRK00454 186 RAAIAKWLAE 195 (196)
T ss_pred HHHHHHHhcC
Confidence 9999876643
No 179
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.85 E-value=1.9e-20 Score=125.63 Aligned_cols=147 Identities=20% Similarity=0.151 Sum_probs=97.2
Q ss_pred CCCchhHHHHHHhhCCCC-CccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhc-------cchhhccCCcEEEEEE
Q 030225 1 MGTGKTSLVLRFVKGQFF-DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHS-------LAPMYYRGAAAAVVVY 72 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-------~~~~~~~~~d~~i~v~ 72 (181)
+|||||||++++.+.... ....+............... ...+.+||+||...+.. ....++..+|++++|+
T Consensus 5 ~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il~v~ 83 (163)
T cd00880 5 TNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP-LGPVVLIDTPGIDEAGGLGREREELARRVLERADLILFVV 83 (163)
T ss_pred CCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC-CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEEEEE
Confidence 699999999999986554 22222222222222222221 45788999999765443 3344788999999999
Q ss_pred ECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHH---HHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Q 030225 73 DITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNE---EGELYAQENGLSFLETSAKSAHNVNELFYEI 149 (181)
Q Consensus 73 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~---~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l 149 (181)
|+++........ +..... ..+.|+++++||.|+......... .........+.+++++||+++.|+++++++|
T Consensus 84 ~~~~~~~~~~~~-~~~~~~---~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l~~~l 159 (163)
T cd00880 84 DADLRADEEEEK-LLELLR---ERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDELREAL 159 (163)
T ss_pred eCCCCCCHHHHH-HHHHHH---hcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHHHHHH
Confidence 999877665544 333332 257899999999998653332221 1122233345789999999999999999999
Q ss_pred HHH
Q 030225 150 AKR 152 (181)
Q Consensus 150 ~~~ 152 (181)
.+.
T Consensus 160 ~~~ 162 (163)
T cd00880 160 IEA 162 (163)
T ss_pred Hhh
Confidence 875
No 180
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.85 E-value=2.9e-20 Score=149.34 Aligned_cols=146 Identities=18% Similarity=0.193 Sum_probs=102.9
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEE--EEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChh
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQ--VLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMD 78 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~--~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~ 78 (181)
+++|||||+++|....+.....+.++.+.... .+..++....+.||||||+..|..++..++..+|++|+|+|++++.
T Consensus 253 vdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDiaILVVDA~dGv 332 (742)
T CHL00189 253 VDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDIAILIIAADDGV 332 (742)
T ss_pred CCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCEEEEEEECcCCC
Confidence 58999999999998877654444443332222 3333445678999999999999999999999999999999998743
Q ss_pred HHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHH-------HHHcC--CeEEEEecCCCCCHHHHHHHH
Q 030225 79 SFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELY-------AQENG--LSFLETSAKSAHNVNELFYEI 149 (181)
Q Consensus 79 s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~-------~~~~~--~~~~~~Sa~~~~gi~~~~~~l 149 (181)
...... .+..+. ..+.|+++++||+|+.... .++.... ...++ ++++++||++|.|+.+++++|
T Consensus 333 ~~QT~E-~I~~~k---~~~iPiIVViNKiDl~~~~---~e~v~~eL~~~~ll~e~~g~~vpvv~VSAktG~GIdeLle~I 405 (742)
T CHL00189 333 KPQTIE-AINYIQ---AANVPIIVAINKIDKANAN---TERIKQQLAKYNLIPEKWGGDTPMIPISASQGTNIDKLLETI 405 (742)
T ss_pred ChhhHH-HHHHHH---hcCceEEEEEECCCccccC---HHHHHHHHHHhccchHhhCCCceEEEEECCCCCCHHHHHHhh
Confidence 222211 122222 2468999999999985421 1222221 12233 689999999999999999999
Q ss_pred HHHH
Q 030225 150 AKRL 153 (181)
Q Consensus 150 ~~~~ 153 (181)
....
T Consensus 406 ~~l~ 409 (742)
T CHL00189 406 LLLA 409 (742)
T ss_pred hhhh
Confidence 8764
No 181
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.85 E-value=8.8e-20 Score=127.65 Aligned_cols=110 Identities=17% Similarity=0.270 Sum_probs=83.1
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCC-cEEEEEEECCCh-h
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGA-AAAVVVYDITSM-D 78 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~-d~~i~v~d~~~~-~ 78 (181)
+|||||||+++|..+.+..++.++ ............+....+.+||+||+..++..+..+++.+ +++|||+|+++. .
T Consensus 9 ~~sGKTsL~~~l~~~~~~~t~~s~-~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD~~~~~~ 87 (203)
T cd04105 9 SDSGKTALFTKLTTGKYRSTVTSI-EPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVDSATFQK 87 (203)
T ss_pred CCCCHHHHHHHHhcCCCCCccCcE-eecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEECccchh
Confidence 689999999999998877665433 3333222222224456789999999999988888899998 999999999987 6
Q ss_pred HHHHHHHHHHHHHHh---CCCCceEEEEEeCCCCcc
Q 030225 79 SFERAKKWVQELQRQ---GNPNLIMFLVANKVDLEE 111 (181)
Q Consensus 79 s~~~~~~~~~~~~~~---~~~~~p~ivi~nK~D~~~ 111 (181)
++..+..|+..+... .....|+++++||+|+..
T Consensus 88 ~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~ 123 (203)
T cd04105 88 NLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFT 123 (203)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcc
Confidence 777777666555332 226899999999999853
No 182
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.85 E-value=4.7e-20 Score=149.29 Aligned_cols=143 Identities=19% Similarity=0.182 Sum_probs=101.0
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+++|||||+++|....+.....+.++.+.....+..++ ..+.||||||+..|..++...+..+|++|+|+|+++...-
T Consensus 299 vd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~aDiaILVVdAddGv~~ 376 (787)
T PRK05306 299 VDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMRARGAQVTDIVVLVVAADDGVMP 376 (787)
T ss_pred CCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhHHHhhhhhCCEEEEEEECCCCCCH
Confidence 58999999999998777655444444444444444443 5788999999999999999899999999999999874221
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHH-------HHHHcC--CeEEEEecCCCCCHHHHHHHHHH
Q 030225 81 ERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGEL-------YAQENG--LSFLETSAKSAHNVNELFYEIAK 151 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~-------~~~~~~--~~~~~~Sa~~~~gi~~~~~~l~~ 151 (181)
... ..+.... ..+.|+++++||+|+.+.. .+.... +...++ ++++++||++|+|+.++|++|..
T Consensus 377 qT~-e~i~~a~---~~~vPiIVviNKiDl~~a~---~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~GI~eLle~I~~ 449 (787)
T PRK05306 377 QTI-EAINHAK---AAGVPIIVAINKIDKPGAN---PDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGEGIDELLEAILL 449 (787)
T ss_pred hHH-HHHHHHH---hcCCcEEEEEECccccccC---HHHHHHHHHHhcccHHHhCCCceEEEEeCCCCCCchHHHHhhhh
Confidence 111 1122222 2468999999999985421 111111 122333 68999999999999999999976
Q ss_pred H
Q 030225 152 R 152 (181)
Q Consensus 152 ~ 152 (181)
.
T Consensus 450 ~ 450 (787)
T PRK05306 450 Q 450 (787)
T ss_pred h
Confidence 4
No 183
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.85 E-value=3.6e-20 Score=125.30 Aligned_cols=147 Identities=19% Similarity=0.120 Sum_probs=94.7
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhh--------ccchhhccCCcEEEEEE
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYH--------SLAPMYYRGAAAAVVVY 72 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~--------~~~~~~~~~~d~~i~v~ 72 (181)
||||||||++++.+.......... .................+.+||+||..... ......+..+|++++|+
T Consensus 12 ~g~GKttl~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~i~~v~ 90 (168)
T cd04163 12 PNVGKSTLLNALVGQKISIVSPKP-QTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKDVDLVLFVV 90 (168)
T ss_pred CCCCHHHHHHHHhCCceEeccCCC-CceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHhCCEEEEEE
Confidence 699999999999987653322111 111112222233345678899999964322 12344578899999999
Q ss_pred ECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcC-CeEEEEecCCCCCHHHHHHHHHH
Q 030225 73 DITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYEIAK 151 (181)
Q Consensus 73 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~~~~~l~~ 151 (181)
|++++.. .....+...+... +.|+++++||+|+....+...+....+....+ .+++++|++++.|+++++++|.+
T Consensus 91 d~~~~~~-~~~~~~~~~~~~~---~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~l~~ 166 (168)
T cd04163 91 DASEPIG-EGDEFILELLKKS---KTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGENVDELLEEIVK 166 (168)
T ss_pred ECCCccC-chHHHHHHHHHHh---CCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccCCChHHHHHHHHh
Confidence 9997621 1122233333222 57899999999986433333333444444443 68999999999999999999976
Q ss_pred H
Q 030225 152 R 152 (181)
Q Consensus 152 ~ 152 (181)
.
T Consensus 167 ~ 167 (168)
T cd04163 167 Y 167 (168)
T ss_pred h
Confidence 4
No 184
>COG1159 Era GTPase [General function prediction only]
Probab=99.84 E-value=2.2e-20 Score=133.23 Aligned_cols=154 Identities=16% Similarity=0.066 Sum_probs=104.3
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhh--------hhccchhhccCCcEEEEEE
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER--------YHSLAPMYYRGAAAAVVVY 72 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~~~~~d~~i~v~ 72 (181)
||||||||+|+|++.+....... ..+++.....-+..++.++.++||||-.. +.......+.++|+++||+
T Consensus 15 PNvGKSTLlN~l~G~KisIvS~k-~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~dvDlilfvv 93 (298)
T COG1159 15 PNVGKSTLLNALVGQKISIVSPK-PQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSALKDVDLILFVV 93 (298)
T ss_pred CCCcHHHHHHHHhcCceEeecCC-cchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHhccCcEEEEEE
Confidence 89999999999999988765433 23333333333444577999999999432 1222345588999999999
Q ss_pred ECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcC-CeEEEEecCCCCCHHHHHHHHHH
Q 030225 73 DITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYEIAK 151 (181)
Q Consensus 73 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~~~~~l~~ 151 (181)
|++++-.- .....++.+.. .+.|+++++||+|..............+..... ..++++||++|.|++.+.+.+..
T Consensus 94 d~~~~~~~-~d~~il~~lk~---~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g~n~~~L~~~i~~ 169 (298)
T COG1159 94 DADEGWGP-GDEFILEQLKK---TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKGDNVDTLLEIIKE 169 (298)
T ss_pred eccccCCc-cHHHHHHHHhh---cCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeeccccCCHHHHHHHHHH
Confidence 99863221 12233344433 357999999999986654422233333333333 46899999999999999999999
Q ss_pred HHHhhCCC
Q 030225 152 RLAEVNPS 159 (181)
Q Consensus 152 ~~~~~~~~ 159 (181)
.+.+..+-
T Consensus 170 ~Lpeg~~~ 177 (298)
T COG1159 170 YLPEGPWY 177 (298)
T ss_pred hCCCCCCc
Confidence 88776554
No 185
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.84 E-value=4.5e-20 Score=126.87 Aligned_cols=136 Identities=17% Similarity=0.208 Sum_probs=89.5
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCh----------hhhhccchhhcc---CCcE
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ----------ERYHSLAPMYYR---GAAA 67 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~----------~~~~~~~~~~~~---~~d~ 67 (181)
+|+|||||+++|++..+...+.++.+.+.....+..++ .+.+||+||. ..+..+...+++ .+++
T Consensus 27 ~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 103 (179)
T TIGR03598 27 SNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQKLIEEYLEKRENLKG 103 (179)
T ss_pred CCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHHHHHHHHHhChhhcE
Confidence 69999999999998875555556666555444444443 5889999994 233334444554 3589
Q ss_pred EEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccc--cCCHHHHHHHHHHcC--CeEEEEecCCCCCHH
Q 030225 68 AVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR--KVKNEEGELYAQENG--LSFLETSAKSAHNVN 143 (181)
Q Consensus 68 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~--~~~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~ 143 (181)
+++|+|++++-+.... .++..+.. .++|+++++||+|+.... +...++.+..+...+ ..++++||++|+|++
T Consensus 104 ii~vvd~~~~~~~~~~-~~~~~~~~---~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 104 VVLLMDIRHPLKELDL-EMLEWLRE---RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDPSVQLFSSLKKTGID 179 (179)
T ss_pred EEEEecCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCCceEEEECCCCCCCC
Confidence 9999999875443333 22233322 368999999999985432 122334444555443 579999999999974
No 186
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.84 E-value=8.7e-20 Score=124.34 Aligned_cols=146 Identities=21% Similarity=0.154 Sum_probs=93.0
Q ss_pred CCCchhHHHHHHhhCCCCCc-cccceeeeEEEEEEEECCeEEEEEEEeCCChhhh----------hcc-chhhccCCcEE
Q 030225 1 MGTGKTSLVLRFVKGQFFDF-QESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERY----------HSL-APMYYRGAAAA 68 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----------~~~-~~~~~~~~d~~ 68 (181)
||+|||||+++|++...... ..+..........+..++. .+.+||+||.... ... ....+..+|++
T Consensus 11 ~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~~~~d~v 88 (174)
T cd01895 11 PNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGK--KYTLIDTAGIRRKGKVEEGIEKYSVLRTLKAIERADVV 88 (174)
T ss_pred CCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCe--eEEEEECCCCccccchhccHHHHHHHHHHHHHhhcCeE
Confidence 69999999999998754321 1122222222233344443 4679999996432 111 12346789999
Q ss_pred EEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHH-HHHHc----CCeEEEEecCCCCCHH
Q 030225 69 VVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGEL-YAQEN----GLSFLETSAKSAHNVN 143 (181)
Q Consensus 69 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~-~~~~~----~~~~~~~Sa~~~~gi~ 143 (181)
++|+|++++.+.... .++..+.. .+.|+++++||+|+.+......+...+ ..+.. ..+++++||++++|+.
T Consensus 89 i~v~d~~~~~~~~~~-~~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 164 (174)
T cd01895 89 LLVIDATEGITEQDL-RIAGLILE---EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFISALTGQGVD 164 (174)
T ss_pred EEEEeCCCCcchhHH-HHHHHHHh---cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEEeccCCCCHH
Confidence 999999987665443 23333322 357999999999986543222222222 22222 3689999999999999
Q ss_pred HHHHHHHHH
Q 030225 144 ELFYEIAKR 152 (181)
Q Consensus 144 ~~~~~l~~~ 152 (181)
++++++.+.
T Consensus 165 ~~~~~l~~~ 173 (174)
T cd01895 165 KLFDAIDEV 173 (174)
T ss_pred HHHHHHHHh
Confidence 999998764
No 187
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.84 E-value=9.7e-20 Score=144.86 Aligned_cols=149 Identities=19% Similarity=0.203 Sum_probs=104.2
Q ss_pred CCCchhHHHHHHhhCCCC-------Cccc------cceeeeEEEEEEEE-----CCeEEEEEEEeCCChhhhhccchhhc
Q 030225 1 MGTGKTSLVLRFVKGQFF-------DFQE------STIGAAFFTQVLSL-----NEVTIKFDIWDTAGQERYHSLAPMYY 62 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~-------~~~~------~t~~~~~~~~~~~~-----~~~~~~~~i~D~~G~~~~~~~~~~~~ 62 (181)
.++|||||+.+|+..... ..+. ...|.++......+ ++..+.+++|||||+.+|...+..++
T Consensus 16 vd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~dF~~~v~~sl 95 (600)
T PRK05433 16 IDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVDFSYEVSRSL 95 (600)
T ss_pred CCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHHHHHHHHHHH
Confidence 479999999999863211 0110 12244443333322 45578999999999999999999999
Q ss_pred cCCcEEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCe---EEEEecCCC
Q 030225 63 RGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLS---FLETSAKSA 139 (181)
Q Consensus 63 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~---~~~~Sa~~~ 139 (181)
+.+|++|+|+|++++........|.... . .+.|+++++||+|+.... .......+....++. ++++||++|
T Consensus 96 ~~aD~aILVVDas~gv~~qt~~~~~~~~-~---~~lpiIvViNKiDl~~a~--~~~v~~ei~~~lg~~~~~vi~iSAktG 169 (600)
T PRK05433 96 AACEGALLVVDASQGVEAQTLANVYLAL-E---NDLEIIPVLNKIDLPAAD--PERVKQEIEDVIGIDASDAVLVSAKTG 169 (600)
T ss_pred HHCCEEEEEEECCCCCCHHHHHHHHHHH-H---CCCCEEEEEECCCCCccc--HHHHHHHHHHHhCCCcceEEEEecCCC
Confidence 9999999999999865555444443322 2 367899999999985422 122223344445553 899999999
Q ss_pred CCHHHHHHHHHHHHHh
Q 030225 140 HNVNELFYEIAKRLAE 155 (181)
Q Consensus 140 ~gi~~~~~~l~~~~~~ 155 (181)
.|+.+++++|.+.+..
T Consensus 170 ~GI~~Ll~~I~~~lp~ 185 (600)
T PRK05433 170 IGIEEVLEAIVERIPP 185 (600)
T ss_pred CCHHHHHHHHHHhCcc
Confidence 9999999999887653
No 188
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.84 E-value=7.1e-20 Score=141.72 Aligned_cols=144 Identities=19% Similarity=0.156 Sum_probs=96.6
Q ss_pred CCCchhHHHHHHhhCCCCCc-cccceeeeEEEEEEEECCeEEEEEEEeCCCh--------hhhhccchhhccCCcEEEEE
Q 030225 1 MGTGKTSLVLRFVKGQFFDF-QESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ--------ERYHSLAPMYYRGAAAAVVV 71 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~--------~~~~~~~~~~~~~~d~~i~v 71 (181)
||||||||+|+|.+...... ..+.++.+........++ .++.+|||||. ..+......+++++|++++|
T Consensus 8 ~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad~vl~v 85 (429)
T TIGR03594 8 PNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGG--REFILIDTGGIEEDDDGLDKQIREQAEIAIEEADVILFV 85 (429)
T ss_pred CCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECC--eEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCCEEEEE
Confidence 79999999999998764221 112222233333333444 46889999995 33444556678999999999
Q ss_pred EECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCC-eEEEEecCCCCCHHHHHHHHH
Q 030225 72 YDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGL-SFLETSAKSAHNVNELFYEIA 150 (181)
Q Consensus 72 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~~~~~l~ 150 (181)
+|+.++..... ..+...+.. .++|+++++||+|+.+.... ... ....++ .++++||.+|.|+.++++++.
T Consensus 86 vD~~~~~~~~d-~~i~~~l~~---~~~piilVvNK~D~~~~~~~----~~~-~~~lg~~~~~~vSa~~g~gv~~ll~~i~ 156 (429)
T TIGR03594 86 VDGREGLTPED-EEIAKWLRK---SGKPVILVANKIDGKKEDAV----AAE-FYSLGFGEPIPISAEHGRGIGDLLDAIL 156 (429)
T ss_pred EeCCCCCCHHH-HHHHHHHHH---hCCCEEEEEECccCCccccc----HHH-HHhcCCCCeEEEeCCcCCChHHHHHHHH
Confidence 99987533222 122222322 36899999999998643321 122 334566 799999999999999999998
Q ss_pred HHHHh
Q 030225 151 KRLAE 155 (181)
Q Consensus 151 ~~~~~ 155 (181)
+.+.+
T Consensus 157 ~~l~~ 161 (429)
T TIGR03594 157 ELLPE 161 (429)
T ss_pred HhcCc
Confidence 87754
No 189
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.84 E-value=4.7e-22 Score=131.73 Aligned_cols=156 Identities=33% Similarity=0.562 Sum_probs=134.0
Q ss_pred CCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCe-EEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEV-TIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 2 ~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
|+|||+++.++....+...|+.|+|.++.......+.. -+++++||+.|++.|..+...|++.+.+.++|||+++...|
T Consensus 35 ~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~~iVfdvt~s~tf 114 (229)
T KOG4423|consen 35 GVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGAFIVFDVTRSLTF 114 (229)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcceEEEEEccccccc
Confidence 79999999999999999999999999988887766554 46889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhC----CCCceEEEEEeCCCCcccc-cCCHHHHHHHHHHcCC-eEEEEecCCCCCHHHHHHHHHHHHH
Q 030225 81 ERAKKWVQELQRQG----NPNLIMFLVANKVDLEEKR-KVKNEEGELYAQENGL-SFLETSAKSAHNVNELFYEIAKRLA 154 (181)
Q Consensus 81 ~~~~~~~~~~~~~~----~~~~p~ivi~nK~D~~~~~-~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~~~~~l~~~~~ 154 (181)
+....|.+.+.... ....|+++.+||+|+.... .....+..++.+++|+ ..+++|++.+.++.|..+.|++.+.
T Consensus 115 e~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Kenkni~Ea~r~lVe~~l 194 (229)
T KOG4423|consen 115 EPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKENKNIPEAQRELVEKIL 194 (229)
T ss_pred cHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeeccccccChhHHHHHHHHHHH
Confidence 99999999886532 2457788899999985422 2223567788888886 6999999999999999999999888
Q ss_pred hhC
Q 030225 155 EVN 157 (181)
Q Consensus 155 ~~~ 157 (181)
.+.
T Consensus 195 vnd 197 (229)
T KOG4423|consen 195 VND 197 (229)
T ss_pred hhc
Confidence 765
No 190
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.83 E-value=2e-19 Score=139.43 Aligned_cols=138 Identities=20% Similarity=0.155 Sum_probs=93.9
Q ss_pred CCCchhHHHHHHhhCCCCC-ccccceeeeEEEEEEEECCeEEEEEEEeCCChhh--------hhccchhhccCCcEEEEE
Q 030225 1 MGTGKTSLVLRFVKGQFFD-FQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER--------YHSLAPMYYRGAAAAVVV 71 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~~~~~d~~i~v 71 (181)
||||||||+++|.+..... ...+.++.++.......++ ..+.+|||||... +......++.++|++++|
T Consensus 10 ~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~v 87 (435)
T PRK00093 10 PNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIEEADVILFV 87 (435)
T ss_pred CCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEE
Confidence 7999999999999876421 1123333334344444544 6789999999865 222345568899999999
Q ss_pred EECCChhHHH--HHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCe-EEEEecCCCCCHHHHHHH
Q 030225 72 YDITSMDSFE--RAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLS-FLETSAKSAHNVNELFYE 148 (181)
Q Consensus 72 ~d~~~~~s~~--~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~~~~~~ 148 (181)
+|++++.+.. .+..|+.. .+.|+++++||+|+.+. ......+ ...++. ++++||++|.|+.+++++
T Consensus 88 vd~~~~~~~~~~~~~~~l~~------~~~piilv~NK~D~~~~----~~~~~~~-~~lg~~~~~~iSa~~g~gv~~l~~~ 156 (435)
T PRK00093 88 VDGRAGLTPADEEIAKILRK------SNKPVILVVNKVDGPDE----EADAYEF-YSLGLGEPYPISAEHGRGIGDLLDA 156 (435)
T ss_pred EECCCCCCHHHHHHHHHHHH------cCCcEEEEEECccCccc----hhhHHHH-HhcCCCCCEEEEeeCCCCHHHHHHH
Confidence 9998753322 23333332 26899999999996431 1222222 345664 899999999999999999
Q ss_pred HHH
Q 030225 149 IAK 151 (181)
Q Consensus 149 l~~ 151 (181)
+..
T Consensus 157 I~~ 159 (435)
T PRK00093 157 ILE 159 (435)
T ss_pred HHh
Confidence 987
No 191
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.83 E-value=3.2e-19 Score=144.98 Aligned_cols=145 Identities=14% Similarity=0.165 Sum_probs=107.3
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhcc----------chhh--ccCCcEE
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSL----------APMY--YRGAAAA 68 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~----------~~~~--~~~~d~~ 68 (181)
||||||||+|+|.+.... ..+..|+++......+.....++.+||+||..++... ...+ ...+|++
T Consensus 12 pNvGKSTLfN~Ltg~~~~--vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~~~~aD~v 89 (772)
T PRK09554 12 PNSGKTTLFNQLTGARQR--VGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLL 89 (772)
T ss_pred CCCCHHHHHHHHhCCCCc--cCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHHHhccCCCEE
Confidence 799999999999986542 2344566666666566666778899999998765432 1223 2479999
Q ss_pred EEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Q 030225 69 VVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYE 148 (181)
Q Consensus 69 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~ 148 (181)
++|+|+++.+... .+..++.+ .+.|+++++||+|+.+.+.. .....++.+..+++++++||++++|++++++.
T Consensus 90 I~VvDat~ler~l---~l~~ql~e---~giPvIvVlNK~Dl~~~~~i-~id~~~L~~~LG~pVvpiSA~~g~GIdeL~~~ 162 (772)
T PRK09554 90 INVVDASNLERNL---YLTLQLLE---LGIPCIVALNMLDIAEKQNI-RIDIDALSARLGCPVIPLVSTRGRGIEALKLA 162 (772)
T ss_pred EEEecCCcchhhH---HHHHHHHH---cCCCEEEEEEchhhhhccCc-HHHHHHHHHHhCCCEEEEEeecCCCHHHHHHH
Confidence 9999999865432 24444443 36899999999998654444 34556777888999999999999999999999
Q ss_pred HHHHHH
Q 030225 149 IAKRLA 154 (181)
Q Consensus 149 l~~~~~ 154 (181)
+.+...
T Consensus 163 I~~~~~ 168 (772)
T PRK09554 163 IDRHQA 168 (772)
T ss_pred HHHhhh
Confidence 987653
No 192
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=1.6e-20 Score=124.80 Aligned_cols=154 Identities=32% Similarity=0.548 Sum_probs=136.0
Q ss_pred CCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHHH
Q 030225 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFE 81 (181)
Q Consensus 2 ~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~ 81 (181)
|.||||++++++.+.+..++.+|+|..+....+.-+.+.++|..||+.|++.+..+...++-.+...|++||++..-.+.
T Consensus 20 g~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAiimFdVtsr~t~~ 99 (216)
T KOG0096|consen 20 GTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAIIMFDVTSRFTYK 99 (216)
T ss_pred cccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeEEEeeeeehhhhh
Confidence 78999999999999999999999999998888877777899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHhhCC
Q 030225 82 RAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVNP 158 (181)
Q Consensus 82 ~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~~ 158 (181)
++.+|...+.+.+ .++|+++.|||.|... +. ...+...+.+..++.|+++||+.+.|++..|-||..++.....
T Consensus 100 n~~rwhrd~~rv~-~NiPiv~cGNKvDi~~-r~-~k~k~v~~~rkknl~y~~iSaksn~NfekPFl~LarKl~G~p~ 173 (216)
T KOG0096|consen 100 NVPRWHRDLVRVR-ENIPIVLCGNKVDIKA-RK-VKAKPVSFHRKKNLQYYEISAKSNYNFERPFLWLARKLTGDPS 173 (216)
T ss_pred cchHHHHHHHHHh-cCCCeeeeccceeccc-cc-cccccceeeecccceeEEeecccccccccchHHHhhhhcCCCC
Confidence 9999999988876 5699999999999744 22 2334455677788999999999999999999999998877644
No 193
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.83 E-value=2.4e-19 Score=141.81 Aligned_cols=147 Identities=18% Similarity=0.152 Sum_probs=96.2
Q ss_pred CCCchhHHHHHHhhCCCCCcccc----ceeeeEEEEEEE------------ECCeEEEEEEEeCCChhhhhccchhhccC
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQES----TIGAAFFTQVLS------------LNEVTIKFDIWDTAGQERYHSLAPMYYRG 64 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~----t~~~~~~~~~~~------------~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 64 (181)
+|+|||||+++|.+..+...... ++|..+...... ++.....+.+|||||++.|..++..+++.
T Consensus 13 ~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~~l~~~~~~~ 92 (590)
T TIGR00491 13 VDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFTNLRKRGGAL 92 (590)
T ss_pred CCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHHHHHHHHHhh
Confidence 68999999999998876543322 233322211110 00111238899999999999999999999
Q ss_pred CcEEEEEEECCC---hhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccC------------CHHH----------
Q 030225 65 AAAAVVVYDITS---MDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKV------------KNEE---------- 119 (181)
Q Consensus 65 ~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~------------~~~~---------- 119 (181)
+|++++|+|+++ +.+++.+. .+.. .+.|+++++||+|+...+.. ....
T Consensus 93 aD~~IlVvD~~~g~~~qt~e~i~----~l~~---~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v~~~~~~~~~ 165 (590)
T TIGR00491 93 ADLAILIVDINEGFKPQTQEALN----ILRM---YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQQNLDTKVY 165 (590)
T ss_pred CCEEEEEEECCcCCCHhHHHHHH----HHHH---cCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHHHHHHHHHHH
Confidence 999999999987 34443332 2222 36799999999998532110 0000
Q ss_pred --HHHHHH------------Hc--CCeEEEEecCCCCCHHHHHHHHHHHHH
Q 030225 120 --GELYAQ------------EN--GLSFLETSAKSAHNVNELFYEIAKRLA 154 (181)
Q Consensus 120 --~~~~~~------------~~--~~~~~~~Sa~~~~gi~~~~~~l~~~~~ 154 (181)
...+.. ++ ..+++++||++|+|+++++++|.....
T Consensus 166 ~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~~ 216 (590)
T TIGR00491 166 NLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLAQ 216 (590)
T ss_pred HHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHHH
Confidence 001110 11 258999999999999999999876544
No 194
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.82 E-value=7e-20 Score=126.87 Aligned_cols=150 Identities=23% Similarity=0.196 Sum_probs=98.5
Q ss_pred CCCchhHHHHHHhhCCCCCcc------------------ccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhc
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQ------------------ESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYY 62 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~------------------~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~ 62 (181)
.++|||||+++|+........ ...++.......+........+.++|+||+..|.......+
T Consensus 12 ~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~~f~~~~~~~~ 91 (188)
T PF00009_consen 12 VDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHEDFIKEMIRGL 91 (188)
T ss_dssp TTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSHHHHHHHHHHH
T ss_pred CCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccccceeeccccee
Confidence 479999999999864422110 01122222222222235567889999999999988888889
Q ss_pred cCCcEEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccc-CCHHHHH-HHHHHc------CCeEEEE
Q 030225 63 RGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRK-VKNEEGE-LYAQEN------GLSFLET 134 (181)
Q Consensus 63 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~-~~~~~~~-~~~~~~------~~~~~~~ 134 (181)
..+|++|+|+|+.++-.. .....+..+... +.|+++++||+|+...+. ...++.. .+.+.. .++++++
T Consensus 92 ~~~D~ailvVda~~g~~~-~~~~~l~~~~~~---~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vi~~ 167 (188)
T PF00009_consen 92 RQADIAILVVDANDGIQP-QTEEHLKILREL---GIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGENGEEIVPVIPI 167 (188)
T ss_dssp TTSSEEEEEEETTTBSTH-HHHHHHHHHHHT---T-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTSTTTSTEEEEEE
T ss_pred cccccceeeeeccccccc-cccccccccccc---ccceEEeeeeccchhhhHHHHHHHHHHHhccccccCccccceEEEE
Confidence 999999999999865332 233344444333 678999999999863211 1111122 333333 2579999
Q ss_pred ecCCCCCHHHHHHHHHHHHH
Q 030225 135 SAKSAHNVNELFYEIAKRLA 154 (181)
Q Consensus 135 Sa~~~~gi~~~~~~l~~~~~ 154 (181)
||.+|.|+.++++.|.+.+.
T Consensus 168 Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 168 SALTGDGIDELLEALVELLP 187 (188)
T ss_dssp BTTTTBTHHHHHHHHHHHS-
T ss_pred ecCCCCCHHHHHHHHHHhCc
Confidence 99999999999999987653
No 195
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.82 E-value=2.8e-19 Score=138.59 Aligned_cols=149 Identities=19% Similarity=0.178 Sum_probs=95.9
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhh----------hhcc-chhhccCCcEEE
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER----------YHSL-APMYYRGAAAAV 69 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----------~~~~-~~~~~~~~d~~i 69 (181)
||+|||||+++|++...... .+..|+++......+......+.+|||||... +... ...+++.+|+++
T Consensus 182 ~n~GKStlin~ll~~~~~~~-~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~i 260 (435)
T PRK00093 182 PNVGKSSLINALLGEERVIV-SDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVL 260 (435)
T ss_pred CCCCHHHHHHHHhCCCceee-cCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEE
Confidence 79999999999997653221 12233444443333333345678999999532 1111 123678899999
Q ss_pred EEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHH-HHHH----cCCeEEEEecCCCCCHHH
Q 030225 70 VVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGEL-YAQE----NGLSFLETSAKSAHNVNE 144 (181)
Q Consensus 70 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~-~~~~----~~~~~~~~Sa~~~~gi~~ 144 (181)
+|+|++++.+.... .++..+.. .++|+++++||+|+.+... ..+... .... ..++++++||+++.|+.+
T Consensus 261 lViD~~~~~~~~~~-~i~~~~~~---~~~~~ivv~NK~Dl~~~~~--~~~~~~~~~~~l~~~~~~~i~~~SA~~~~gv~~ 334 (435)
T PRK00093 261 LVIDATEGITEQDL-RIAGLALE---AGRALVIVVNKWDLVDEKT--MEEFKKELRRRLPFLDYAPIVFISALTGQGVDK 334 (435)
T ss_pred EEEeCCCCCCHHHH-HHHHHHHH---cCCcEEEEEECccCCCHHH--HHHHHHHHHHhcccccCCCEEEEeCCCCCCHHH
Confidence 99999987665543 23333333 3579999999999863221 111111 1111 247899999999999999
Q ss_pred HHHHHHHHHHhh
Q 030225 145 LFYEIAKRLAEV 156 (181)
Q Consensus 145 ~~~~l~~~~~~~ 156 (181)
+++.+.+.....
T Consensus 335 l~~~i~~~~~~~ 346 (435)
T PRK00093 335 LLEAIDEAYENA 346 (435)
T ss_pred HHHHHHHHHHHH
Confidence 999988766543
No 196
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.82 E-value=2.4e-19 Score=145.83 Aligned_cols=144 Identities=25% Similarity=0.210 Sum_probs=96.5
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhh--------hhccchhhccCCcEEEEEE
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER--------YHSLAPMYYRGAAAAVVVY 72 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~~~~~d~~i~v~ 72 (181)
||||||||+|+|++..... ..++.|+++.............+.+|||||... +......++..+|++++|+
T Consensus 284 ~nvGKSSL~n~l~~~~~~i-v~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~aD~iL~Vv 362 (712)
T PRK09518 284 PNVGKSTLVNRILGRREAV-VEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAVSLADAVVFVV 362 (712)
T ss_pred CCCCHHHHHHHHhCCCcee-ecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHHHhCCEEEEEE
Confidence 7999999999999876422 223445555444444433345788999999652 2333455688999999999
Q ss_pred ECCChhHHHHH-HHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCC-eEEEEecCCCCCHHHHHHHHH
Q 030225 73 DITSMDSFERA-KKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGL-SFLETSAKSAHNVNELFYEIA 150 (181)
Q Consensus 73 d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~~~~~l~ 150 (181)
|+++.- ... ..|...+.. .++|+++++||+|+.... ......+. .+. ..+++||++|.|+.+++++|+
T Consensus 363 Da~~~~--~~~d~~i~~~Lr~---~~~pvIlV~NK~D~~~~~---~~~~~~~~--lg~~~~~~iSA~~g~GI~eLl~~i~ 432 (712)
T PRK09518 363 DGQVGL--TSTDERIVRMLRR---AGKPVVLAVNKIDDQASE---YDAAEFWK--LGLGEPYPISAMHGRGVGDLLDEAL 432 (712)
T ss_pred ECCCCC--CHHHHHHHHHHHh---cCCCEEEEEECcccccch---hhHHHHHH--cCCCCeEEEECCCCCCchHHHHHHH
Confidence 998632 222 234444433 478999999999985421 11122222 232 357899999999999999999
Q ss_pred HHHHh
Q 030225 151 KRLAE 155 (181)
Q Consensus 151 ~~~~~ 155 (181)
+.+..
T Consensus 433 ~~l~~ 437 (712)
T PRK09518 433 DSLKV 437 (712)
T ss_pred Hhccc
Confidence 98755
No 197
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.81 E-value=1.8e-18 Score=140.76 Aligned_cols=150 Identities=19% Similarity=0.153 Sum_probs=99.9
Q ss_pred CCCchhHHHHHHhhCCCC-CccccceeeeEEEEEEEECCeEEEEEEEeCCChh----------hhhcc-chhhccCCcEE
Q 030225 1 MGTGKTSLVLRFVKGQFF-DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE----------RYHSL-APMYYRGAAAA 68 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~----------~~~~~-~~~~~~~~d~~ 68 (181)
||||||||+|+|++.... ....+.++.+.....+.+++.. +.+|||||.. .+..+ ...+++.+|++
T Consensus 459 ~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~--~~liDTaG~~~~~~~~~~~e~~~~~r~~~~i~~advv 536 (712)
T PRK09518 459 PNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGED--WLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSELA 536 (712)
T ss_pred CCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCE--EEEEECCCcccCcccchhHHHHHHHHHHHHhhcCCEE
Confidence 799999999999988642 1222333344444445556554 5699999953 12222 13447899999
Q ss_pred EEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHH-Hc----CCeEEEEecCCCCCHH
Q 030225 69 VVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQ-EN----GLSFLETSAKSAHNVN 143 (181)
Q Consensus 69 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~-~~----~~~~~~~Sa~~~~gi~ 143 (181)
++|+|++++.+..... ++..+.. .++|+++++||+|+.+... .+....... .. ..+++++||++|.|++
T Consensus 537 ilViDat~~~s~~~~~-i~~~~~~---~~~piIiV~NK~DL~~~~~--~~~~~~~~~~~l~~~~~~~ii~iSAktg~gv~ 610 (712)
T PRK09518 537 LFLFDASQPISEQDLK-VMSMAVD---AGRALVLVFNKWDLMDEFR--RQRLERLWKTEFDRVTWARRVNLSAKTGWHTN 610 (712)
T ss_pred EEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEEchhcCChhH--HHHHHHHHHHhccCCCCCCEEEEECCCCCCHH
Confidence 9999999887766654 3344433 3689999999999864221 111221111 11 2467999999999999
Q ss_pred HHHHHHHHHHHhhCC
Q 030225 144 ELFYEIAKRLAEVNP 158 (181)
Q Consensus 144 ~~~~~l~~~~~~~~~ 158 (181)
++++.+.+.+.+...
T Consensus 611 ~L~~~i~~~~~~~~~ 625 (712)
T PRK09518 611 RLAPAMQEALESWDQ 625 (712)
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999998876433
No 198
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.81 E-value=3.7e-19 Score=137.36 Aligned_cols=144 Identities=16% Similarity=0.102 Sum_probs=94.0
Q ss_pred CCCchhHHHHHHhhC--CCCCcc---------------------------ccceeeeEEEEEEEECCeEEEEEEEeCCCh
Q 030225 1 MGTGKTSLVLRFVKG--QFFDFQ---------------------------ESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 51 (181)
Q Consensus 1 ~~~GKttLl~~l~~~--~~~~~~---------------------------~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~ 51 (181)
+++|||||+.+|+.. ...... ...-|.+.......+....+.+.+||+||+
T Consensus 16 vd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~~~i~iiDtpGh 95 (426)
T TIGR00483 16 VDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDKYEVTIVDCPGH 95 (426)
T ss_pred cCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCCeEEEEEECCCH
Confidence 489999999999862 221100 001133344444455666678999999999
Q ss_pred hhhhccchhhccCCcEEEEEEECCChhHHHH--HHHHHHHHHHhCCCCceEEEEEeCCCCccccc----CCHHHHHHHHH
Q 030225 52 ERYHSLAPMYYRGAAAAVVVYDITSMDSFER--AKKWVQELQRQGNPNLIMFLVANKVDLEEKRK----VKNEEGELYAQ 125 (181)
Q Consensus 52 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~----~~~~~~~~~~~ 125 (181)
+.|.......+..+|++++|+|++++++... ...++...... ...|+++++||+|+.+..+ ....+...+++
T Consensus 96 ~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~--~~~~iIVviNK~Dl~~~~~~~~~~~~~ei~~~~~ 173 (426)
T TIGR00483 96 RDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTL--GINQLIVAINKMDSVNYDEEEFEAIKKEVSNLIK 173 (426)
T ss_pred HHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHc--CCCeEEEEEEChhccCccHHHHHHHHHHHHHHHH
Confidence 9887666667789999999999998753211 11222222222 2457999999999864211 12344555666
Q ss_pred HcC-----CeEEEEecCCCCCHHHHH
Q 030225 126 ENG-----LSFLETSAKSAHNVNELF 146 (181)
Q Consensus 126 ~~~-----~~~~~~Sa~~~~gi~~~~ 146 (181)
..+ ++++++||++|.|+.+.+
T Consensus 174 ~~g~~~~~~~~i~iSA~~g~ni~~~~ 199 (426)
T TIGR00483 174 KVGYNPDTVPFIPISAWNGDNVIKKS 199 (426)
T ss_pred HcCCCcccceEEEeeccccccccccc
Confidence 655 579999999999998644
No 199
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.81 E-value=1.5e-18 Score=117.66 Aligned_cols=143 Identities=20% Similarity=0.251 Sum_probs=94.1
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChh----------hhhccchhhcc---CCcE
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE----------RYHSLAPMYYR---GAAA 67 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~----------~~~~~~~~~~~---~~d~ 67 (181)
+|+|||||++++.++.+.....++.+.+.....+..++ .+.+||+||.. .+......++. +.++
T Consensus 8 ~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (170)
T cd01876 8 SNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENRENLKG 84 (170)
T ss_pred CCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHHhChhhhE
Confidence 69999999999997666665666666655554444444 78899999942 23333444444 4578
Q ss_pred EEEEEECCChhH--HHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccc--CCHHHHHHHHH--HcCCeEEEEecCCCCC
Q 030225 68 AVVVYDITSMDS--FERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRK--VKNEEGELYAQ--ENGLSFLETSAKSAHN 141 (181)
Q Consensus 68 ~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~--~~~~~~~~~~~--~~~~~~~~~Sa~~~~g 141 (181)
+++++|..+... ...+..|+... +.|+++++||+|+..... .........++ ....+++++||+++.|
T Consensus 85 ~~~v~d~~~~~~~~~~~~~~~l~~~------~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sa~~~~~ 158 (170)
T cd01876 85 VVLLIDSRHGPTEIDLEMLDWLEEL------GIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFSSLKGQG 158 (170)
T ss_pred EEEEEEcCcCCCHhHHHHHHHHHHc------CCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEecCCCCC
Confidence 899999876532 22233333322 478999999999843221 11122222232 2346889999999999
Q ss_pred HHHHHHHHHHH
Q 030225 142 VNELFYEIAKR 152 (181)
Q Consensus 142 i~~~~~~l~~~ 152 (181)
+++++++|.+.
T Consensus 159 ~~~l~~~l~~~ 169 (170)
T cd01876 159 IDELRALIEKW 169 (170)
T ss_pred HHHHHHHHHHh
Confidence 99999999864
No 200
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.80 E-value=4.1e-19 Score=137.12 Aligned_cols=144 Identities=19% Similarity=0.117 Sum_probs=93.9
Q ss_pred CCCchhHHHHHHhhCCCCCcc-----------------------------ccceeeeEEEEEEEECCeEEEEEEEeCCCh
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQ-----------------------------ESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 51 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~-----------------------------~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~ 51 (181)
+++|||||+++|+........ ....|+++......++...+++.+|||||+
T Consensus 15 ~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~~~i~liDtpG~ 94 (425)
T PRK12317 15 VDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDKYYFTIVDCPGH 94 (425)
T ss_pred CCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCCeEEEEEECCCc
Confidence 689999999999843221100 012344555555566666788999999999
Q ss_pred hhhhccchhhccCCcEEEEEEECCChhHHHH-HHHHHHHHHHhCCCCceEEEEEeCCCCccccc----CCHHHHHHHHHH
Q 030225 52 ERYHSLAPMYYRGAAAAVVVYDITSMDSFER-AKKWVQELQRQGNPNLIMFLVANKVDLEEKRK----VKNEEGELYAQE 126 (181)
Q Consensus 52 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~----~~~~~~~~~~~~ 126 (181)
+.|.......+..+|++++|+|+++...+.. ...++..+... ...|+++++||+|+.+..+ ...++...++..
T Consensus 95 ~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~--~~~~iivviNK~Dl~~~~~~~~~~~~~~i~~~l~~ 172 (425)
T PRK12317 95 RDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL--GINQLIVAINKMDAVNYDEKRYEEVKEEVSKLLKM 172 (425)
T ss_pred ccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc--CCCeEEEEEEccccccccHHHHHHHHHHHHHHHHh
Confidence 8876655556789999999999987312222 22233333222 2357899999999864211 122344455555
Q ss_pred cC-----CeEEEEecCCCCCHHHHH
Q 030225 127 NG-----LSFLETSAKSAHNVNELF 146 (181)
Q Consensus 127 ~~-----~~~~~~Sa~~~~gi~~~~ 146 (181)
.+ ++++++||++|+|+.+..
T Consensus 173 ~g~~~~~~~ii~iSA~~g~gi~~~~ 197 (425)
T PRK12317 173 VGYKPDDIPFIPVSAFEGDNVVKKS 197 (425)
T ss_pred hCCCcCcceEEEeecccCCCccccc
Confidence 54 479999999999998754
No 201
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.80 E-value=2.7e-18 Score=136.93 Aligned_cols=151 Identities=14% Similarity=0.139 Sum_probs=98.9
Q ss_pred CCCchhHHHHHHhhC---CCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCCh
Q 030225 1 MGTGKTSLVLRFVKG---QFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSM 77 (181)
Q Consensus 1 ~~~GKttLl~~l~~~---~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 77 (181)
+++|||||+++|.+. .+.++....++.+.....+...+ ...+.+||+||++.|.......+.++|++++|+|++++
T Consensus 9 vdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~-g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lLVVda~eg 87 (614)
T PRK10512 9 VDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPD-GRVLGFIDVPGHEKFLSNMLAGVGGIDHALLVVACDDG 87 (614)
T ss_pred CCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCC-CcEEEEEECCCHHHHHHHHHHHhhcCCEEEEEEECCCC
Confidence 579999999999863 33334434444443333332222 23578999999999877777778999999999998863
Q ss_pred hHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccc--CCHHHHHHHHHHcC---CeEEEEecCCCCCHHHHHHHHHHH
Q 030225 78 DSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRK--VKNEEGELYAQENG---LSFLETSAKSAHNVNELFYEIAKR 152 (181)
Q Consensus 78 ~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~--~~~~~~~~~~~~~~---~~~~~~Sa~~~~gi~~~~~~l~~~ 152 (181)
- .......+..+... ...++++++||+|+.+... ...++...+....+ .+++++||++|+|++++++.|.+.
T Consensus 88 ~-~~qT~ehl~il~~l--gi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~L~~~L~~~ 164 (614)
T PRK10512 88 V-MAQTREHLAILQLT--GNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGIDALREHLLQL 164 (614)
T ss_pred C-cHHHHHHHHHHHHc--CCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHh
Confidence 1 12222333333222 2233578999999864221 11233444544444 689999999999999999999876
Q ss_pred HHh
Q 030225 153 LAE 155 (181)
Q Consensus 153 ~~~ 155 (181)
...
T Consensus 165 ~~~ 167 (614)
T PRK10512 165 PER 167 (614)
T ss_pred hcc
Confidence 544
No 202
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.80 E-value=8.1e-19 Score=123.34 Aligned_cols=142 Identities=21% Similarity=0.192 Sum_probs=88.6
Q ss_pred CCCchhHHHHHHhhCCCCCcc-c----------------------------cceeeeEEEEEEEECCeEEEEEEEeCCCh
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQ-E----------------------------STIGAAFFTQVLSLNEVTIKFDIWDTAGQ 51 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~-~----------------------------~t~~~~~~~~~~~~~~~~~~~~i~D~~G~ 51 (181)
+|+|||||+++|+........ . ..-|+++......+.....++.+|||||+
T Consensus 8 ~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~liDTpG~ 87 (208)
T cd04166 8 VDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFIIADTPGH 87 (208)
T ss_pred CCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEEEEECCcH
Confidence 699999999999764322110 0 00123333333344445567889999999
Q ss_pred hhhhccchhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccc----CCHHHHHHHHHHc
Q 030225 52 ERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRK----VKNEEGELYAQEN 127 (181)
Q Consensus 52 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~----~~~~~~~~~~~~~ 127 (181)
..|.......+..+|++++|+|++++.. .........+... ..+++++++||+|+..... ....+...+....
T Consensus 88 ~~~~~~~~~~~~~ad~~llVvD~~~~~~-~~~~~~~~~~~~~--~~~~iIvviNK~D~~~~~~~~~~~i~~~~~~~~~~~ 164 (208)
T cd04166 88 EQYTRNMVTGASTADLAILLVDARKGVL-EQTRRHSYILSLL--GIRHVVVAVNKMDLVDYSEEVFEEIVADYLAFAAKL 164 (208)
T ss_pred HHHHHHHHHhhhhCCEEEEEEECCCCcc-HhHHHHHHHHHHc--CCCcEEEEEEchhcccCCHHHHHHHHHHHHHHHHHc
Confidence 8877666667899999999999986532 1122222222222 2345778899999854221 1122334445555
Q ss_pred C---CeEEEEecCCCCCHHHH
Q 030225 128 G---LSFLETSAKSAHNVNEL 145 (181)
Q Consensus 128 ~---~~~~~~Sa~~~~gi~~~ 145 (181)
+ .+++.+||+++.|+.+.
T Consensus 165 ~~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 165 GIEDITFIPISALDGDNVVSR 185 (208)
T ss_pred CCCCceEEEEeCCCCCCCccC
Confidence 5 35899999999998753
No 203
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.79 E-value=1.2e-18 Score=138.34 Aligned_cols=151 Identities=18% Similarity=0.212 Sum_probs=107.8
Q ss_pred CCCchhHHHHHHhhC--CCCCcc------------ccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCc
Q 030225 1 MGTGKTSLVLRFVKG--QFFDFQ------------ESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAA 66 (181)
Q Consensus 1 ~~~GKttLl~~l~~~--~~~~~~------------~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 66 (181)
.++|||||+++|+.. .+.... ....|.++......+.+..+++.+|||||+..|...+..+++.+|
T Consensus 10 vd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~~~l~~aD 89 (594)
T TIGR01394 10 VDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVERVLGMVD 89 (594)
T ss_pred CCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHHHHHHhCC
Confidence 479999999999863 221111 012355565666666666789999999999999988899999999
Q ss_pred EEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccc-CCHHHHHHHHH-------HcCCeEEEEecCC
Q 030225 67 AAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRK-VKNEEGELYAQ-------ENGLSFLETSAKS 138 (181)
Q Consensus 67 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~-~~~~~~~~~~~-------~~~~~~~~~Sa~~ 138 (181)
++++|+|+++. .......|+..+... +.|.++++||+|+.+.+. ....+...+.. ...++++++||++
T Consensus 90 ~alLVVDa~~G-~~~qT~~~l~~a~~~---~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~pvl~~SA~~ 165 (594)
T TIGR01394 90 GVLLLVDASEG-PMPQTRFVLKKALEL---GLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDFPIVYASGRA 165 (594)
T ss_pred EEEEEEeCCCC-CcHHHHHHHHHHHHC---CCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccCcEEechhhc
Confidence 99999999863 344556676666553 578899999999854322 11223333332 2357899999999
Q ss_pred CC----------CHHHHHHHHHHHHHh
Q 030225 139 AH----------NVNELFYEIAKRLAE 155 (181)
Q Consensus 139 ~~----------gi~~~~~~l~~~~~~ 155 (181)
|. |+..+|+.+++.+..
T Consensus 166 g~~~~~~~~~~~gi~~Lld~Iv~~lP~ 192 (594)
T TIGR01394 166 GWASLDLDDPSDNMAPLFDAIVRHVPA 192 (594)
T ss_pred CcccccCcccccCHHHHHHHHHHhCCC
Confidence 95 799999998877653
No 204
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.79 E-value=6e-18 Score=134.26 Aligned_cols=146 Identities=23% Similarity=0.192 Sum_probs=94.0
Q ss_pred CCCchhHHHHHHhhCCCCCcccc----ceeeeEEEEEEE--ECCeE-----E-----EEEEEeCCChhhhhccchhhccC
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQES----TIGAAFFTQVLS--LNEVT-----I-----KFDIWDTAGQERYHSLAPMYYRG 64 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~----t~~~~~~~~~~~--~~~~~-----~-----~~~i~D~~G~~~~~~~~~~~~~~ 64 (181)
+|+|||||+++|.+......... ++|.++...... ..+.. . .+.+|||||++.|..++...+..
T Consensus 15 ~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~ 94 (586)
T PRK04004 15 VDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAFTNLRKRGGAL 94 (586)
T ss_pred CCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHHHHHHHHhHhh
Confidence 68999999999987655433322 333322221110 00111 1 26899999999999988888899
Q ss_pred CcEEEEEEECCC---hhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccC----CH--------H-----------
Q 030225 65 AAAAVVVYDITS---MDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKV----KN--------E----------- 118 (181)
Q Consensus 65 ~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~----~~--------~----------- 118 (181)
+|++++|+|+++ +.+++.+. .+.. .+.|+++++||+|+...+.. .. .
T Consensus 95 aD~~IlVvDa~~g~~~qt~e~i~----~~~~---~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~~v~~~f~~~l~ 167 (586)
T PRK04004 95 ADIAILVVDINEGFQPQTIEAIN----ILKR---RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQRVQQELEEKLY 167 (586)
T ss_pred CCEEEEEEECCCCCCHhHHHHHH----HHHH---cCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhHHHHHHHHHHHH
Confidence 999999999997 44544432 2222 46889999999998521110 00 0
Q ss_pred HHHHHHHHc---------------CCeEEEEecCCCCCHHHHHHHHHHHH
Q 030225 119 EGELYAQEN---------------GLSFLETSAKSAHNVNELFYEIAKRL 153 (181)
Q Consensus 119 ~~~~~~~~~---------------~~~~~~~Sa~~~~gi~~~~~~l~~~~ 153 (181)
+...+.... .++++++||++|+|+.++++.+...+
T Consensus 168 ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~ 217 (586)
T PRK04004 168 ELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLA 217 (586)
T ss_pred HHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHH
Confidence 011111211 25789999999999999999887544
No 205
>PRK10218 GTP-binding protein; Provisional
Probab=99.79 E-value=5e-18 Score=134.77 Aligned_cols=150 Identities=17% Similarity=0.177 Sum_probs=106.6
Q ss_pred CCCchhHHHHHHhh--CCCCCcc------------ccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCc
Q 030225 1 MGTGKTSLVLRFVK--GQFFDFQ------------ESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAA 66 (181)
Q Consensus 1 ~~~GKttLl~~l~~--~~~~~~~------------~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 66 (181)
+++|||||+++|+. +.+.... ..+.|.++......+.+..+++.+|||||+..|...+..+++.+|
T Consensus 14 ~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~~v~~~l~~aD 93 (607)
T PRK10218 14 VDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGGEVERVMSMVD 93 (607)
T ss_pred CCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHHHHHHHHHhCC
Confidence 58999999999997 3332211 134567777777777778889999999999999999999999999
Q ss_pred EEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccc-CCHHHHHHHHH-------HcCCeEEEEecCC
Q 030225 67 AAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRK-VKNEEGELYAQ-------ENGLSFLETSAKS 138 (181)
Q Consensus 67 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~-~~~~~~~~~~~-------~~~~~~~~~Sa~~ 138 (181)
++|+|+|+++... ...+.++..+.. .+.|.++++||+|+.+.+. ...++...+.. ...++++.+||++
T Consensus 94 g~ILVVDa~~G~~-~qt~~~l~~a~~---~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~~PVi~~SA~~ 169 (607)
T PRK10218 94 SVLLVVDAFDGPM-PQTRFVTKKAFA---YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLDFPIVYASALN 169 (607)
T ss_pred EEEEEEecccCcc-HHHHHHHHHHHH---cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccccCCCEEEeEhhc
Confidence 9999999987432 223344444433 3678899999999864322 11122333221 1347899999999
Q ss_pred CC----------CHHHHHHHHHHHHH
Q 030225 139 AH----------NVNELFYEIAKRLA 154 (181)
Q Consensus 139 ~~----------gi~~~~~~l~~~~~ 154 (181)
|. |+..+++.+++.+.
T Consensus 170 G~~~~~~~~~~~~i~~Lld~Ii~~iP 195 (607)
T PRK10218 170 GIAGLDHEDMAEDMTPLYQAIVDHVP 195 (607)
T ss_pred CcccCCccccccchHHHHHHHHHhCC
Confidence 98 57888887776654
No 206
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.78 E-value=4.7e-18 Score=121.37 Aligned_cols=106 Identities=19% Similarity=0.189 Sum_probs=75.9
Q ss_pred CCCchhHHHHHHhhCCCCCcc----------------ccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccC
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQ----------------ESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 64 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~----------------~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 64 (181)
+|+|||||+++|+........ ....+.++......+.....++.+|||||+..|...+..+++.
T Consensus 8 ~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~~~~~l~~ 87 (237)
T cd04168 8 VDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAEVERSLSV 87 (237)
T ss_pred CCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHHHHHHHHH
Confidence 589999999999864221100 0112333444455555667789999999999988888889999
Q ss_pred CcEEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCc
Q 030225 65 AAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLE 110 (181)
Q Consensus 65 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~ 110 (181)
+|++++|+|+++.... ....++..+.. .++|.++++||+|+.
T Consensus 88 aD~~IlVvd~~~g~~~-~~~~~~~~~~~---~~~P~iivvNK~D~~ 129 (237)
T cd04168 88 LDGAILVISAVEGVQA-QTRILWRLLRK---LNIPTIIFVNKIDRA 129 (237)
T ss_pred hCeEEEEEeCCCCCCH-HHHHHHHHHHH---cCCCEEEEEECcccc
Confidence 9999999999976432 33455555543 367999999999974
No 207
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.78 E-value=1.2e-18 Score=130.88 Aligned_cols=144 Identities=18% Similarity=0.142 Sum_probs=99.5
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhh---------ccchhhccCCcEEEEE
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYH---------SLAPMYYRGAAAAVVV 71 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~---------~~~~~~~~~~d~~i~v 71 (181)
||||||||.|||.+.+..... .+.|+++.-...........|.++||+|-+... ......+..||++|||
T Consensus 12 PNVGKSTLFNRL~g~r~AIV~-D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~eADvilfv 90 (444)
T COG1160 12 PNVGKSTLFNRLTGRRIAIVS-DTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEEADVILFV 90 (444)
T ss_pred CCCcHHHHHHHHhCCeeeEee-cCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHhCCEEEEE
Confidence 899999999999998765432 455666655555555555679999999965322 2234567899999999
Q ss_pred EECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCC-eEEEEecCCCCCHHHHHHHHH
Q 030225 72 YDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGL-SFLETSAKSAHNVNELFYEIA 150 (181)
Q Consensus 72 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~~~~~l~ 150 (181)
+|...+-+-. ...+..++.. .++|+++++||+|-.. .+....+|. .+|+ .++.+||..|.|+.++++.++
T Consensus 91 VD~~~Git~~--D~~ia~~Lr~--~~kpviLvvNK~D~~~----~e~~~~efy-slG~g~~~~ISA~Hg~Gi~dLld~v~ 161 (444)
T COG1160 91 VDGREGITPA--DEEIAKILRR--SKKPVILVVNKIDNLK----AEELAYEFY-SLGFGEPVPISAEHGRGIGDLLDAVL 161 (444)
T ss_pred EeCCCCCCHH--HHHHHHHHHh--cCCCEEEEEEcccCch----hhhhHHHHH-hcCCCCceEeehhhccCHHHHHHHHH
Confidence 9988632221 1222222222 4689999999999642 112222232 3565 589999999999999999999
Q ss_pred HHHH
Q 030225 151 KRLA 154 (181)
Q Consensus 151 ~~~~ 154 (181)
..+.
T Consensus 162 ~~l~ 165 (444)
T COG1160 162 ELLP 165 (444)
T ss_pred hhcC
Confidence 9873
No 208
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.78 E-value=3.5e-18 Score=131.01 Aligned_cols=113 Identities=19% Similarity=0.176 Sum_probs=80.5
Q ss_pred EEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccC--CH
Q 030225 40 TIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKV--KN 117 (181)
Q Consensus 40 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~--~~ 117 (181)
...+.+||+||++.|...+......+|++++|+|++++.........+..+... ..+|+++++||+|+.+.... ..
T Consensus 79 ~~~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~--gi~~iIVvvNK~Dl~~~~~~~~~~ 156 (406)
T TIGR03680 79 LRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEII--GIKNIVIVQNKIDLVSKEKALENY 156 (406)
T ss_pred ccEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHc--CCCeEEEEEEccccCCHHHHHHHH
Confidence 467899999999999888888888899999999998643122233344433332 23578999999998642211 12
Q ss_pred HHHHHHHHHc---CCeEEEEecCCCCCHHHHHHHHHHHHH
Q 030225 118 EEGELYAQEN---GLSFLETSAKSAHNVNELFYEIAKRLA 154 (181)
Q Consensus 118 ~~~~~~~~~~---~~~~~~~Sa~~~~gi~~~~~~l~~~~~ 154 (181)
++...+.... +++++++||++|+|+++++++|...+.
T Consensus 157 ~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 157 EEIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIP 196 (406)
T ss_pred HHHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence 3333444332 578999999999999999999987654
No 209
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.77 E-value=4.4e-17 Score=116.20 Aligned_cols=144 Identities=21% Similarity=0.157 Sum_probs=92.0
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhh-------ccchhhccCCcEEEEEEE
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYH-------SLAPMYYRGAAAAVVVYD 73 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~~~~~~~~~d~~i~v~d 73 (181)
||||||||+++|.+........+..+.+.....+.+++ .++++||+||..... .....+++++|++++|+|
T Consensus 9 ~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~il~V~D 86 (233)
T cd01896 9 PSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKG--AKIQLLDLPGIIEGAADGKGRGRQVIAVARTADLILMVLD 86 (233)
T ss_pred CCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECC--eEEEEEECCCcccccccchhHHHHHHHhhccCCEEEEEec
Confidence 79999999999998653221112222222233333443 578899999974322 122356899999999999
Q ss_pred CCChhH-HHHHHHHHHHH-----------------------------------------HHhC-----------------
Q 030225 74 ITSMDS-FERAKKWVQEL-----------------------------------------QRQG----------------- 94 (181)
Q Consensus 74 ~~~~~s-~~~~~~~~~~~-----------------------------------------~~~~----------------- 94 (181)
+++++. .+.+...+..+ .++.
T Consensus 87 ~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~~~~~~~~ 166 (233)
T cd01896 87 ATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIREDITVDDL 166 (233)
T ss_pred CCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEccCCCHHHH
Confidence 987652 33333322210 0000
Q ss_pred -------CCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHH
Q 030225 95 -------NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 153 (181)
Q Consensus 95 -------~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~ 153 (181)
....|+++++||+|+.. .++...+++ ...++++||+++.|++++++.+.+.+
T Consensus 167 ~~~~~~~~~y~p~iiV~NK~Dl~~-----~~~~~~~~~--~~~~~~~SA~~g~gi~~l~~~i~~~L 225 (233)
T cd01896 167 IDVIEGNRVYIPCLYVYNKIDLIS-----IEELDLLAR--QPNSVVISAEKGLNLDELKERIWDKL 225 (233)
T ss_pred HHHHhCCceEeeEEEEEECccCCC-----HHHHHHHhc--CCCEEEEcCCCCCCHHHHHHHHHHHh
Confidence 12368999999999843 344444443 35689999999999999999998754
No 210
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.77 E-value=2.4e-18 Score=121.81 Aligned_cols=141 Identities=14% Similarity=0.092 Sum_probs=89.2
Q ss_pred CCCchhHHHHHHhhCCCCCc--------------------------cc---cceeeeEEEEEEEECCeEEEEEEEeCCCh
Q 030225 1 MGTGKTSLVLRFVKGQFFDF--------------------------QE---STIGAAFFTQVLSLNEVTIKFDIWDTAGQ 51 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~--------------------------~~---~t~~~~~~~~~~~~~~~~~~~~i~D~~G~ 51 (181)
+++|||||+.+|+....... +. ..-|+++......+.....++.+||+||+
T Consensus 8 ~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~liDtpG~ 87 (219)
T cd01883 8 VDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFTILDAPGH 87 (219)
T ss_pred CCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEEEEECCCh
Confidence 58999999999974221100 00 01234444455555556678999999999
Q ss_pred hhhhccchhhccCCcEEEEEEECCChh------HHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccc--cc----CCHHH
Q 030225 52 ERYHSLAPMYYRGAAAAVVVYDITSMD------SFERAKKWVQELQRQGNPNLIMFLVANKVDLEEK--RK----VKNEE 119 (181)
Q Consensus 52 ~~~~~~~~~~~~~~d~~i~v~d~~~~~------s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~--~~----~~~~~ 119 (181)
..|...+...+..+|++|+|+|++++. ........+...... ..+|+++++||+|+... .+ ....+
T Consensus 88 ~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~iiivvNK~Dl~~~~~~~~~~~~i~~~ 165 (219)
T cd01883 88 RDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTL--GVKQLIVAVNKMDDVTVNWSEERYDEIKKE 165 (219)
T ss_pred HHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHc--CCCeEEEEEEccccccccccHHHHHHHHHH
Confidence 888777777788899999999999742 111222222333222 34689999999998631 11 11122
Q ss_pred HHHHHHHcC-----CeEEEEecCCCCCHH
Q 030225 120 GELYAQENG-----LSFLETSAKSAHNVN 143 (181)
Q Consensus 120 ~~~~~~~~~-----~~~~~~Sa~~~~gi~ 143 (181)
...+....+ ++++++||++|+|+.
T Consensus 166 l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 166 LSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred HHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 222334433 579999999999987
No 211
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.77 E-value=2.5e-17 Score=109.53 Aligned_cols=143 Identities=20% Similarity=0.275 Sum_probs=105.1
Q ss_pred CCchhHHHHHHhhCCCCCc--------cc----cceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEE
Q 030225 2 GTGKTSLVLRFVKGQFFDF--------QE----STIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV 69 (181)
Q Consensus 2 ~~GKttLl~~l~~~~~~~~--------~~----~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 69 (181)
++||||++++++....... .. -|+..++....+ . ....+.++|+|||++|..+|..+++++.++|
T Consensus 20 ~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~--~-~~~~v~LfgtPGq~RF~fm~~~l~~ga~gai 96 (187)
T COG2229 20 GAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIEL--D-EDTGVHLFGTPGQERFKFMWEILSRGAVGAI 96 (187)
T ss_pred ccchhhHHHHhhccccceeeccccccccccccceeEeecccceEE--c-CcceEEEecCCCcHHHHHHHHHHhCCcceEE
Confidence 7999999999997664211 11 123333333222 2 2246789999999999999999999999999
Q ss_pred EEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHc--CCeEEEEecCCCCCHHHHHH
Q 030225 70 VVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQEN--GLSFLETSAKSAHNVNELFY 147 (181)
Q Consensus 70 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~gi~~~~~ 147 (181)
+++|.+++..+ .....++-+.... ..|++|++||.|+.+.+. .++...+.... .+++++.+|.+++|..+.++
T Consensus 97 vlVDss~~~~~-~a~~ii~f~~~~~--~ip~vVa~NK~DL~~a~p--pe~i~e~l~~~~~~~~vi~~~a~e~~~~~~~L~ 171 (187)
T COG2229 97 VLVDSSRPITF-HAEEIIDFLTSRN--PIPVVVAINKQDLFDALP--PEKIREALKLELLSVPVIEIDATEGEGARDQLD 171 (187)
T ss_pred EEEecCCCcch-HHHHHHHHHhhcc--CCCEEEEeeccccCCCCC--HHHHHHHHHhccCCCceeeeecccchhHHHHHH
Confidence 99999998887 5555555554442 289999999999966444 34444444333 78999999999999999999
Q ss_pred HHHHH
Q 030225 148 EIAKR 152 (181)
Q Consensus 148 ~l~~~ 152 (181)
.+...
T Consensus 172 ~ll~~ 176 (187)
T COG2229 172 VLLLK 176 (187)
T ss_pred HHHhh
Confidence 88765
No 212
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.76 E-value=1.1e-17 Score=126.13 Aligned_cols=145 Identities=21% Similarity=0.159 Sum_probs=100.6
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhcc--------chhhccCCcEEEEEE
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSL--------APMYYRGAAAAVVVY 72 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~~~~~d~~i~v~ 72 (181)
||||||||+|.|++..-.... .-.|+++...+..++-..+.+.+.||+|-.+-... ....+++||++++|+
T Consensus 226 PNvGKSSLLNaL~~~d~AIVT-dI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~i~~ADlvL~v~ 304 (454)
T COG0486 226 PNVGKSSLLNALLGRDRAIVT-DIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKKAIEEADLVLFVL 304 (454)
T ss_pred CCCcHHHHHHHHhcCCceEec-CCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHHHHHhCCEEEEEE
Confidence 899999999999987654322 44455566666555555566779999996532221 234578999999999
Q ss_pred ECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHH
Q 030225 73 DITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKR 152 (181)
Q Consensus 73 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~ 152 (181)
|.+.+.+-... ..+. ....++|+++|.||.|+......... . ...+.+++.+|+++++|++.+.+.|.+.
T Consensus 305 D~~~~~~~~d~-~~~~----~~~~~~~~i~v~NK~DL~~~~~~~~~---~--~~~~~~~i~iSa~t~~Gl~~L~~~i~~~ 374 (454)
T COG0486 305 DASQPLDKEDL-ALIE----LLPKKKPIIVVLNKADLVSKIELESE---K--LANGDAIISISAKTGEGLDALREAIKQL 374 (454)
T ss_pred eCCCCCchhhH-HHHH----hcccCCCEEEEEechhcccccccchh---h--ccCCCceEEEEecCccCHHHHHHHHHHH
Confidence 99985221111 1111 22367899999999999764442111 1 1124579999999999999999999998
Q ss_pred HHhh
Q 030225 153 LAEV 156 (181)
Q Consensus 153 ~~~~ 156 (181)
+...
T Consensus 375 ~~~~ 378 (454)
T COG0486 375 FGKG 378 (454)
T ss_pred Hhhc
Confidence 8776
No 213
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.76 E-value=1.4e-17 Score=118.99 Aligned_cols=165 Identities=14% Similarity=0.120 Sum_probs=110.1
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhh------------hhccchhhccCCcEE
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER------------YHSLAPMYYRGAAAA 68 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~------------~~~~~~~~~~~~d~~ 68 (181)
||+|||||.|.+++.+..+....+.++ +......+..+..++.|+||||... +.......+..||.+
T Consensus 81 PNvGKStLtN~mig~kv~~vS~K~~TT-r~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~~a~q~AD~v 159 (379)
T KOG1423|consen 81 PNVGKSTLTNQMIGQKVSAVSRKVHTT-RHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNPRDAAQNADCV 159 (379)
T ss_pred CCcchhhhhhHhhCCccccccccccce-eeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhCHHHHHhhCCEE
Confidence 899999999999999988766555443 3344444556667999999999421 111223456789999
Q ss_pred EEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccc-------------cCC--HHH-HHHHHHHc-----
Q 030225 69 VVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR-------------KVK--NEE-GELYAQEN----- 127 (181)
Q Consensus 69 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~-------------~~~--~~~-~~~~~~~~----- 127 (181)
++++|+++....-. ...+..+..+ ...|.+++.||.|....+ ++. .-+ .+.+...-
T Consensus 160 vVv~Das~tr~~l~-p~vl~~l~~y--s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~~f~~~p~~~~~ 236 (379)
T KOG1423|consen 160 VVVVDASATRTPLH-PRVLHMLEEY--SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQEKFTDVPSDEKW 236 (379)
T ss_pred EEEEeccCCcCccC-hHHHHHHHHH--hcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHHHHhccCCccccc
Confidence 99999997332211 2334445444 478999999999964321 111 111 11111111
Q ss_pred ----CC----eEEEEecCCCCCHHHHHHHHHHHHHhhCCCCccccccccc
Q 030225 128 ----GL----SFLETSAKSAHNVNELFYEIAKRLAEVNPSRQTGMKLHTE 169 (181)
Q Consensus 128 ----~~----~~~~~Sa~~~~gi~~~~~~l~~~~~~~~~~~~~~~~~~~~ 169 (181)
|+ .+|.+||++|+||+++.++|..++....+..+..+.....
T Consensus 237 ~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~gpW~y~a~i~T~~s 286 (379)
T KOG1423|consen 237 RTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPGPWKYPADIVTEES 286 (379)
T ss_pred ccccCcccceeEEEEecccccCHHHHHHHHHhcCCCCCCCCCcccccccC
Confidence 12 3899999999999999999999998888877766655443
No 214
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.75 E-value=1.6e-17 Score=127.32 Aligned_cols=112 Identities=17% Similarity=0.173 Sum_probs=75.9
Q ss_pred EEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccC--CHH
Q 030225 41 IKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKV--KNE 118 (181)
Q Consensus 41 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~--~~~ 118 (181)
.++.+||+||+..|..........+|++++|+|++++.........+..+... ...|+++++||+|+.+.... ..+
T Consensus 85 ~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~--~i~~iiVVlNK~Dl~~~~~~~~~~~ 162 (411)
T PRK04000 85 RRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDII--GIKNIVIVQNKIDLVSKERALENYE 162 (411)
T ss_pred cEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHc--CCCcEEEEEEeeccccchhHHHHHH
Confidence 57899999999888766555566789999999999643111112222223222 23468999999998653221 112
Q ss_pred HHHHHHHHc---CCeEEEEecCCCCCHHHHHHHHHHHHH
Q 030225 119 EGELYAQEN---GLSFLETSAKSAHNVNELFYEIAKRLA 154 (181)
Q Consensus 119 ~~~~~~~~~---~~~~~~~Sa~~~~gi~~~~~~l~~~~~ 154 (181)
+...+++.. +.+++++||++++|+++++++|...+.
T Consensus 163 ~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~ 201 (411)
T PRK04000 163 QIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIP 201 (411)
T ss_pred HHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCC
Confidence 333444322 478999999999999999999988664
No 215
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.75 E-value=4.6e-17 Score=122.41 Aligned_cols=153 Identities=20% Similarity=0.143 Sum_probs=105.9
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhh----------hhcc-chhhccCCcEEE
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER----------YHSL-APMYYRGAAAAV 69 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----------~~~~-~~~~~~~~d~~i 69 (181)
||+|||||+|+|+++.-... .+..|+++......+....-++.++||.|... |... ....+..+|+++
T Consensus 187 PNvGKSsLiN~ilgeeR~Iv-~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvl 265 (444)
T COG1160 187 PNVGKSSLINAILGEERVIV-SDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLKAIERADVVL 265 (444)
T ss_pred CCCCchHHHHHhccCceEEe-cCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhHhHHhhcCEEE
Confidence 89999999999998765443 25667777777776665555677999999532 2111 234467899999
Q ss_pred EEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHH-c----CCeEEEEecCCCCCHHH
Q 030225 70 VVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQE-N----GLSFLETSAKSAHNVNE 144 (181)
Q Consensus 70 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~-~----~~~~~~~Sa~~~~gi~~ 144 (181)
+|+|++.+-+-+. .+....+.+ .+.++++++||+|+.+..+...++.....+. + ..+++.+||+++.|+.+
T Consensus 266 lviDa~~~~~~qD-~~ia~~i~~---~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~iSA~~~~~i~~ 341 (444)
T COG1160 266 LVIDATEGISEQD-LRIAGLIEE---AGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFISALTGQGLDK 341 (444)
T ss_pred EEEECCCCchHHH-HHHHHHHHH---cCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEEEecCCCChHH
Confidence 9999997654332 233333333 4678999999999876543444443322222 1 25889999999999999
Q ss_pred HHHHHHHHHHhhCC
Q 030225 145 LFYEIAKRLAEVNP 158 (181)
Q Consensus 145 ~~~~l~~~~~~~~~ 158 (181)
+|+.+......-..
T Consensus 342 l~~~i~~~~~~~~~ 355 (444)
T COG1160 342 LFEAIKEIYECATR 355 (444)
T ss_pred HHHHHHHHHHHhcc
Confidence 99998876655433
No 216
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.74 E-value=9.3e-17 Score=111.47 Aligned_cols=138 Identities=16% Similarity=0.125 Sum_probs=90.3
Q ss_pred CCCchhHHHHHHhhCCCC------Ccc--------ccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCc
Q 030225 1 MGTGKTSLVLRFVKGQFF------DFQ--------ESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAA 66 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~------~~~--------~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 66 (181)
+++|||||+++|+..... ..+ ...-|.++......+.....++.++||||+..|.......+..+|
T Consensus 11 ~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~~~~~~~~~D 90 (195)
T cd01884 11 VDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKNMITGAAQMD 90 (195)
T ss_pred CCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHHHHHHhhhCC
Confidence 589999999999863100 000 012244444555556666678899999999888777777888999
Q ss_pred EEEEEEECCChhHHHHHHHHHHHHHHhCCCCce-EEEEEeCCCCcccccC---CHHHHHHHHHHcC-----CeEEEEecC
Q 030225 67 AAVVVYDITSMDSFERAKKWVQELQRQGNPNLI-MFLVANKVDLEEKRKV---KNEEGELYAQENG-----LSFLETSAK 137 (181)
Q Consensus 67 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivi~nK~D~~~~~~~---~~~~~~~~~~~~~-----~~~~~~Sa~ 137 (181)
++++|+|+..+-. ......+..+... +.| +++++||+|+....+. ...+...+....+ ++++.+||+
T Consensus 91 ~~ilVvda~~g~~-~~~~~~~~~~~~~---~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~~v~iipiSa~ 166 (195)
T cd01884 91 GAILVVSATDGPM-PQTREHLLLARQV---GVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGDNTPIVRGSAL 166 (195)
T ss_pred EEEEEEECCCCCc-HHHHHHHHHHHHc---CCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccccCCeEEEeeCc
Confidence 9999999986422 2223344444333 455 7788999998532221 2233444554443 689999999
Q ss_pred CCCCH
Q 030225 138 SAHNV 142 (181)
Q Consensus 138 ~~~gi 142 (181)
+|.++
T Consensus 167 ~g~n~ 171 (195)
T cd01884 167 KALEG 171 (195)
T ss_pred cccCC
Confidence 99875
No 217
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.74 E-value=4.4e-17 Score=114.97 Aligned_cols=106 Identities=23% Similarity=0.251 Sum_probs=73.2
Q ss_pred CCCchhHHHHHHhhCCCCCcc-----------------ccceeeeEEEEEEEE-----CCeEEEEEEEeCCChhhhhccc
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQ-----------------ESTIGAAFFTQVLSL-----NEVTIKFDIWDTAGQERYHSLA 58 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~-----------------~~t~~~~~~~~~~~~-----~~~~~~~~i~D~~G~~~~~~~~ 58 (181)
+|+|||||+++|+........ ....|.++......+ ++..+.+.+||+||+..|....
T Consensus 9 ~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~~~f~~~~ 88 (213)
T cd04167 9 LHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGHVNFMDEV 88 (213)
T ss_pred CCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCCcchHHHH
Confidence 589999999999975543221 011122222222221 3557899999999999888888
Q ss_pred hhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCc
Q 030225 59 PMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLE 110 (181)
Q Consensus 59 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~ 110 (181)
..++..+|++++|+|+++..+... ..++..... .+.|+++++||+|+.
T Consensus 89 ~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~---~~~p~iiviNK~D~~ 136 (213)
T cd04167 89 AAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL---EGLPIVLVINKIDRL 136 (213)
T ss_pred HHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECcccC
Confidence 888999999999999987655432 334444332 348999999999974
No 218
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.73 E-value=6.6e-17 Score=116.04 Aligned_cols=142 Identities=19% Similarity=0.243 Sum_probs=96.3
Q ss_pred CCCchhHHHHHHhhCCCCC-c-----cccceeeeEEEEEEEECCeEEEEEEEeCCChhh----hhccchhh---ccCCcE
Q 030225 1 MGTGKTSLVLRFVKGQFFD-F-----QESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER----YHSLAPMY---YRGAAA 67 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~-~-----~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----~~~~~~~~---~~~~d~ 67 (181)
||+||||||++|...+... . ..|.+| .+.+++ ...+.+-|+||--+ .+.+-..| ++.++.
T Consensus 205 PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG------~v~ydd-f~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~~~ 277 (366)
T KOG1489|consen 205 PNAGKSTLLNALSRAKPKVAHYAFTTLRPHIG------TVNYDD-FSQITVADIPGIIEGAHMNKGLGYKFLRHIERCKG 277 (366)
T ss_pred CCCcHHHHHHHhhccCCcccccceeeeccccc------eeeccc-cceeEeccCccccccccccCcccHHHHHHHHhhce
Confidence 8999999999999865432 1 223333 222222 22488999999532 22233333 567999
Q ss_pred EEEEEECCCh---hHHHHHHHHHHHHHHhC--CCCceEEEEEeCCCCcccccCCHHHHHHHHHHcC-CeEEEEecCCCCC
Q 030225 68 AVVVYDITSM---DSFERAKKWVQELQRQG--NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENG-LSFLETSAKSAHN 141 (181)
Q Consensus 68 ~i~v~d~~~~---~s~~~~~~~~~~~~~~~--~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~g 141 (181)
++||+|++.+ ..|+.++.+..++..+. ....|.++|+||+|+.+.... ....+++... ..++++||++++|
T Consensus 278 l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~~---~l~~L~~~lq~~~V~pvsA~~~eg 354 (366)
T KOG1489|consen 278 LLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEKN---LLSSLAKRLQNPHVVPVSAKSGEG 354 (366)
T ss_pred EEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHHH---HHHHHHHHcCCCcEEEeeeccccc
Confidence 9999999988 77888777766665533 367899999999998432221 1234444333 3599999999999
Q ss_pred HHHHHHHHHHH
Q 030225 142 VNELFYEIAKR 152 (181)
Q Consensus 142 i~~~~~~l~~~ 152 (181)
++++++.|.+.
T Consensus 355 l~~ll~~lr~~ 365 (366)
T KOG1489|consen 355 LEELLNGLREL 365 (366)
T ss_pred hHHHHHHHhhc
Confidence 99999988653
No 219
>COG2262 HflX GTPases [General function prediction only]
Probab=99.73 E-value=2.9e-16 Score=116.59 Aligned_cols=150 Identities=20% Similarity=0.184 Sum_probs=106.2
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCh---------hhhhccchhhccCCcEEEEE
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ---------ERYHSLAPMYYRGAAAAVVV 71 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~---------~~~~~~~~~~~~~~d~~i~v 71 (181)
.|+|||||+|+|.+........-..+.+...+.+.+.+ ...+.+-||.|- +.|++... -...+|+++.|
T Consensus 201 TNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFksTLE-E~~~aDlllhV 278 (411)
T COG2262 201 TNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKSTLE-EVKEADLLLHV 278 (411)
T ss_pred ccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHHHHH-HhhcCCEEEEE
Confidence 48999999999997665543333333333445555554 346789999993 23443332 24679999999
Q ss_pred EECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHH
Q 030225 72 YDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAK 151 (181)
Q Consensus 72 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 151 (181)
+|+++++..+.+.-....+.+.....+|++++.||+|+..... .......... ..+.+||++++|++.+++.|.+
T Consensus 279 VDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~----~~~~~~~~~~-~~v~iSA~~~~gl~~L~~~i~~ 353 (411)
T COG2262 279 VDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEE----ILAELERGSP-NPVFISAKTGEGLDLLRERIIE 353 (411)
T ss_pred eecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchh----hhhhhhhcCC-CeEEEEeccCcCHHHHHHHHHH
Confidence 9999998777777777777776667899999999999754332 1111111112 5899999999999999999999
Q ss_pred HHHhhC
Q 030225 152 RLAEVN 157 (181)
Q Consensus 152 ~~~~~~ 157 (181)
.+....
T Consensus 354 ~l~~~~ 359 (411)
T COG2262 354 LLSGLR 359 (411)
T ss_pred Hhhhcc
Confidence 888653
No 220
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.72 E-value=2e-16 Score=107.42 Aligned_cols=147 Identities=18% Similarity=0.201 Sum_probs=102.3
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCC----------hhhhhccchhhccC---CcE
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAG----------QERYHSLAPMYYRG---AAA 67 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~~~~~~~~~~~---~d~ 67 (181)
||||||||||+|++.+.......|+|.+.....+.+++. +.++|.|| .+.+..+...|++. -.+
T Consensus 33 SNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~~i~~YL~~R~~L~~ 109 (200)
T COG0218 33 SNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKKLIEEYLEKRANLKG 109 (200)
T ss_pred CcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHHHHHHHHhhchhheE
Confidence 799999999999998866667789999998888888875 67999999 34455555666653 468
Q ss_pred EEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHc----CCe--EEEEecCCCCC
Q 030225 68 AVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQEN----GLS--FLETSAKSAHN 141 (181)
Q Consensus 68 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~----~~~--~~~~Sa~~~~g 141 (181)
+++++|+..+-.-.+. ..++-+ .. .+.|+++++||+|.....+... .....+... ... ++..|+..+.|
T Consensus 110 vvlliD~r~~~~~~D~-em~~~l-~~--~~i~~~vv~tK~DKi~~~~~~k-~l~~v~~~l~~~~~~~~~~~~~ss~~k~G 184 (200)
T COG0218 110 VVLLIDARHPPKDLDR-EMIEFL-LE--LGIPVIVVLTKADKLKKSERNK-QLNKVAEELKKPPPDDQWVVLFSSLKKKG 184 (200)
T ss_pred EEEEEECCCCCcHHHH-HHHHHH-HH--cCCCeEEEEEccccCChhHHHH-HHHHHHHHhcCCCCccceEEEEecccccC
Confidence 8888998754332221 122222 22 4789999999999865433221 112222222 222 78889999999
Q ss_pred HHHHHHHHHHHHHh
Q 030225 142 VNELFYEIAKRLAE 155 (181)
Q Consensus 142 i~~~~~~l~~~~~~ 155 (181)
++++.+.|.+.+..
T Consensus 185 i~~l~~~i~~~~~~ 198 (200)
T COG0218 185 IDELKAKILEWLKE 198 (200)
T ss_pred HHHHHHHHHHHhhc
Confidence 99999999887654
No 221
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.72 E-value=1.9e-17 Score=108.07 Aligned_cols=144 Identities=19% Similarity=0.262 Sum_probs=107.8
Q ss_pred CCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHHH
Q 030225 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFE 81 (181)
Q Consensus 2 ~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~ 81 (181)
|+|||||+++|.+++... +.||.-.+ +.++.+ .+.+|..+|.+||..-+..|..|+..+|++++.+|+.|.+.|.
T Consensus 30 NAGKTTLLHMLKdDrl~q-hvPTlHPT--SE~l~I--g~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~lvda~d~er~~ 104 (193)
T KOG0077|consen 30 NAGKTTLLHMLKDDRLGQ-HVPTLHPT--SEELSI--GGMTFTTFDLGGHLQARRVWKDYFPQVDAIVYLVDAYDQERFA 104 (193)
T ss_pred CCchhhHHHHHccccccc-cCCCcCCC--hHHhee--cCceEEEEccccHHHHHHHHHHHHhhhceeEeeeehhhHHHhH
Confidence 799999999999877654 33554322 222333 4567889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHH---HHHHc---C-----------CeEEEEecCCCCCHH
Q 030225 82 RAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGEL---YAQEN---G-----------LSFLETSAKSAHNVN 143 (181)
Q Consensus 82 ~~~~~~~~~~~~~-~~~~p~ivi~nK~D~~~~~~~~~~~~~~---~~~~~---~-----------~~~~~~Sa~~~~gi~ 143 (181)
+.+..++.+.... ....|+++.+||+|..... .+++... ..+.. + +.++.||...+.|.-
T Consensus 105 es~~eld~ll~~e~la~vp~lilgnKId~p~a~--se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evfmcsi~~~~gy~ 182 (193)
T KOG0077|consen 105 ESKKELDALLSDESLATVPFLILGNKIDIPYAA--SEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVFMCSIVRKMGYG 182 (193)
T ss_pred HHHHHHHHHHhHHHHhcCcceeecccccCCCcc--cHHHHHHHHHHHHHhcccccccccCCCCCeEEEEEEEEEccCccc
Confidence 9998888876643 3689999999999986533 2232221 11111 1 246899999999999
Q ss_pred HHHHHHHHH
Q 030225 144 ELFYEIAKR 152 (181)
Q Consensus 144 ~~~~~l~~~ 152 (181)
+.|.|+.+.
T Consensus 183 e~fkwl~qy 191 (193)
T KOG0077|consen 183 EGFKWLSQY 191 (193)
T ss_pred eeeeehhhh
Confidence 999888654
No 222
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.72 E-value=2.4e-16 Score=123.57 Aligned_cols=149 Identities=18% Similarity=0.108 Sum_probs=105.8
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhh-------hccchhhc-cCCcEEEEEE
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERY-------HSLAPMYY-RGAAAAVVVY 72 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~~~~~~~-~~~d~~i~v~ 72 (181)
||||||||.|+|.+.+...-.-|.++++...-.+...+. ++.+.|.||--.. ....+..+ .++|++|-|+
T Consensus 12 PNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~--~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~~D~ivnVv 89 (653)
T COG0370 12 PNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGH--EIEIVDLPGTYSLTAYSEDEKVARDFLLEGKPDLIVNVV 89 (653)
T ss_pred CCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCc--eEEEEeCCCcCCCCCCCchHHHHHHHHhcCCCCEEEEEc
Confidence 899999999999997765544466665555555555554 5779999994221 11223333 3579999999
Q ss_pred ECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHH
Q 030225 73 DITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKR 152 (181)
Q Consensus 73 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~ 152 (181)
|+++.+.--.+.-. +.+ -+.|++++.|+.|..+.+-+ ..+..++.+..|+|++.+||++|+|++++++.+.+.
T Consensus 90 DAtnLeRnLyltlQ---LlE---~g~p~ilaLNm~D~A~~~Gi-~ID~~~L~~~LGvPVv~tvA~~g~G~~~l~~~i~~~ 162 (653)
T COG0370 90 DATNLERNLYLTLQ---LLE---LGIPMILALNMIDEAKKRGI-RIDIEKLSKLLGVPVVPTVAKRGEGLEELKRAIIEL 162 (653)
T ss_pred ccchHHHHHHHHHH---HHH---cCCCeEEEeccHhhHHhcCC-cccHHHHHHHhCCCEEEEEeecCCCHHHHHHHHHHh
Confidence 99987654333222 222 36789999999998664433 334566677789999999999999999999999886
Q ss_pred HHhhCC
Q 030225 153 LAEVNP 158 (181)
Q Consensus 153 ~~~~~~ 158 (181)
...+..
T Consensus 163 ~~~~~~ 168 (653)
T COG0370 163 AESKTT 168 (653)
T ss_pred cccccc
Confidence 666553
No 223
>PRK12736 elongation factor Tu; Reviewed
Probab=99.70 E-value=4.5e-16 Score=118.99 Aligned_cols=150 Identities=17% Similarity=0.156 Sum_probs=96.9
Q ss_pred CCCchhHHHHHHhhCCCCC--------------ccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCc
Q 030225 1 MGTGKTSLVLRFVKGQFFD--------------FQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAA 66 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~--------------~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 66 (181)
+++|||||+++|++..... .....-|.+.......+.....++.+||+||+.+|.......+..+|
T Consensus 21 vd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f~~~~~~~~~~~d 100 (394)
T PRK12736 21 VDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADYVKNMITGAAQMD 100 (394)
T ss_pred CCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHHHHHHHHHHhhCC
Confidence 5799999999998631100 00012244444555556555667899999999988776666678899
Q ss_pred EEEEEEECCChhHHHHHHHHHHHHHHhCCCCce-EEEEEeCCCCcccccCC---HHHHHHHHHHcC-----CeEEEEecC
Q 030225 67 AAVVVYDITSMDSFERAKKWVQELQRQGNPNLI-MFLVANKVDLEEKRKVK---NEEGELYAQENG-----LSFLETSAK 137 (181)
Q Consensus 67 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivi~nK~D~~~~~~~~---~~~~~~~~~~~~-----~~~~~~Sa~ 137 (181)
++++|+|++++.. .....++..+... +.| +++++||+|+.+..+.. .++...+++..+ ++++.+||+
T Consensus 101 ~~llVvd~~~g~~-~~t~~~~~~~~~~---g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~vSa~ 176 (394)
T PRK12736 101 GAILVVAATDGPM-PQTREHILLARQV---GVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDFPGDDIPVIRGSAL 176 (394)
T ss_pred EEEEEEECCCCCc-hhHHHHHHHHHHc---CCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCCCcCCccEEEeecc
Confidence 9999999986422 2223344444333 456 67889999986432221 224445555554 579999999
Q ss_pred CCC--------CHHHHHHHHHHHHH
Q 030225 138 SAH--------NVNELFYEIAKRLA 154 (181)
Q Consensus 138 ~~~--------gi~~~~~~l~~~~~ 154 (181)
+|. ++.++++.|.+.+.
T Consensus 177 ~g~~~~~~~~~~i~~Ll~~l~~~lp 201 (394)
T PRK12736 177 KALEGDPKWEDAIMELMDAVDEYIP 201 (394)
T ss_pred ccccCCCcchhhHHHHHHHHHHhCC
Confidence 983 56777777766543
No 224
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.70 E-value=1.6e-15 Score=115.92 Aligned_cols=147 Identities=18% Similarity=0.177 Sum_probs=108.2
Q ss_pred CchhHHHHHHhhCCCCCccccceeeeEEEEEEEECC-eEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHHH
Q 030225 3 TGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNE-VTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFE 81 (181)
Q Consensus 3 ~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~ 81 (181)
-||||||..+-..+.....-..++..+....+..+. ..-.+.|+|||||+.|..|+..-.+-+|++|+|+|+.|.---+
T Consensus 16 HGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaILVVa~dDGv~pQ 95 (509)
T COG0532 16 HGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAILVVAADDGVMPQ 95 (509)
T ss_pred CCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEEEEEEccCCcchh
Confidence 499999999998888776666677677777777652 2346789999999999999988889999999999998732111
Q ss_pred HHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcC---------CeEEEEecCCCCCHHHHHHHHHHH
Q 030225 82 RAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENG---------LSFLETSAKSAHNVNELFYEIAKR 152 (181)
Q Consensus 82 ~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~---------~~~~~~Sa~~~~gi~~~~~~l~~~ 152 (181)
. . ..+......+.|+++++||+|..+ ........-..++| ..++++||++|+|+.+|++.+.-.
T Consensus 96 T-i---EAI~hak~a~vP~iVAiNKiDk~~---~np~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~Gi~eLL~~ill~ 168 (509)
T COG0532 96 T-I---EAINHAKAAGVPIVVAINKIDKPE---ANPDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGEGIDELLELILLL 168 (509)
T ss_pred H-H---HHHHHHHHCCCCEEEEEecccCCC---CCHHHHHHHHHHcCCCHhhcCCceEEEEeeccCCCCHHHHHHHHHHH
Confidence 1 1 122222336899999999999863 22333333333444 368999999999999999998876
Q ss_pred HHhh
Q 030225 153 LAEV 156 (181)
Q Consensus 153 ~~~~ 156 (181)
....
T Consensus 169 aev~ 172 (509)
T COG0532 169 AEVL 172 (509)
T ss_pred HHHH
Confidence 5554
No 225
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.70 E-value=7.6e-16 Score=111.78 Aligned_cols=107 Identities=18% Similarity=0.168 Sum_probs=74.5
Q ss_pred CCCchhHHHHHHhhCCCCCcccc--------------------ceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchh
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQES--------------------TIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPM 60 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~--------------------t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~ 60 (181)
+|+|||||+++|+.......... .-+.++......+++..+++.+|||||+..|......
T Consensus 11 ~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~df~~~~~~ 90 (267)
T cd04169 11 PDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHEDFSEDTYR 90 (267)
T ss_pred CCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCchHHHHHHHH
Confidence 68999999999985322111100 0133444555566777789999999999988877777
Q ss_pred hccCCcEEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcc
Q 030225 61 YYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEE 111 (181)
Q Consensus 61 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~ 111 (181)
.++.+|++|+|+|+++... .....++..... .++|+++++||+|+..
T Consensus 91 ~l~~aD~~IlVvda~~g~~-~~~~~i~~~~~~---~~~P~iivvNK~D~~~ 137 (267)
T cd04169 91 TLTAVDSAVMVIDAAKGVE-PQTRKLFEVCRL---RGIPIITFINKLDREG 137 (267)
T ss_pred HHHHCCEEEEEEECCCCcc-HHHHHHHHHHHh---cCCCEEEEEECCccCC
Confidence 8899999999999987532 222344443322 3689999999999754
No 226
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.69 E-value=5.5e-16 Score=118.60 Aligned_cols=134 Identities=15% Similarity=0.112 Sum_probs=87.3
Q ss_pred CCCchhHHHHHHhhCCC----------------CCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccC
Q 030225 1 MGTGKTSLVLRFVKGQF----------------FDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 64 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~----------------~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 64 (181)
+++|||||+++|++... .++. .-|.+.......++..+.++.+||+||++.|.......+..
T Consensus 21 vd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~--~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f~~~~~~~~~~ 98 (394)
T TIGR00485 21 VDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEK--ARGITINTAHVEYETENRHYAHVDCPGHADYVKNMITGAAQ 98 (394)
T ss_pred cCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHH--hcCcceeeEEEEEcCCCEEEEEEECCchHHHHHHHHHHHhh
Confidence 47999999999974200 0111 12444445555666666788999999999887666666778
Q ss_pred CcEEEEEEECCChhHHHHHHHHHHHHHHhCCCCceE-EEEEeCCCCcccccCC---HHHHHHHHHHcC-----CeEEEEe
Q 030225 65 AAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIM-FLVANKVDLEEKRKVK---NEEGELYAQENG-----LSFLETS 135 (181)
Q Consensus 65 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-ivi~nK~D~~~~~~~~---~~~~~~~~~~~~-----~~~~~~S 135 (181)
+|++++|+|+.++-. ......+..+... +.|. ++++||+|+.+..+.. ..+...+++..+ ++++++|
T Consensus 99 ~D~~ilVvda~~g~~-~qt~e~l~~~~~~---gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~~~~~~~~ii~vS 174 (394)
T TIGR00485 99 MDGAILVVSATDGPM-PQTREHILLARQV---GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYDFPGDDTPIIRGS 174 (394)
T ss_pred CCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcCCCccCccEEECc
Confidence 899999999986322 1222333444333 4555 4689999986432211 234555666654 6899999
Q ss_pred cCCCC
Q 030225 136 AKSAH 140 (181)
Q Consensus 136 a~~~~ 140 (181)
|.++.
T Consensus 175 a~~g~ 179 (394)
T TIGR00485 175 ALKAL 179 (394)
T ss_pred ccccc
Confidence 99874
No 227
>PRK12735 elongation factor Tu; Reviewed
Probab=99.69 E-value=7.2e-16 Score=117.94 Aligned_cols=149 Identities=15% Similarity=0.141 Sum_probs=96.0
Q ss_pred CCCchhHHHHHHhhC-------CC---CC----ccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCc
Q 030225 1 MGTGKTSLVLRFVKG-------QF---FD----FQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAA 66 (181)
Q Consensus 1 ~~~GKttLl~~l~~~-------~~---~~----~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 66 (181)
+++|||||+++|++. .+ .. .....-|.+.......+.....++.|+||||+..|.......+..+|
T Consensus 21 vd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f~~~~~~~~~~aD 100 (396)
T PRK12735 21 VDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADYVKNMITGAAQMD 100 (396)
T ss_pred CCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHHHHHHHhhhccCC
Confidence 589999999999862 10 00 00012244444445555555667899999999888776667788999
Q ss_pred EEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEE-EEEeCCCCccccc---CCHHHHHHHHHHcC-----CeEEEEecC
Q 030225 67 AAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMF-LVANKVDLEEKRK---VKNEEGELYAQENG-----LSFLETSAK 137 (181)
Q Consensus 67 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i-vi~nK~D~~~~~~---~~~~~~~~~~~~~~-----~~~~~~Sa~ 137 (181)
++++|+|+.+... .....++..+.. .+.|.+ +++||+|+.+..+ ....+...+....+ ++++++||.
T Consensus 101 ~~llVvda~~g~~-~qt~e~l~~~~~---~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~~~~~~~ii~~Sa~ 176 (396)
T PRK12735 101 GAILVVSAADGPM-PQTREHILLARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFPGDDTPIIRGSAL 176 (396)
T ss_pred EEEEEEECCCCCc-hhHHHHHHHHHH---cCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCCCcCceeEEecchh
Confidence 9999999986422 222344444433 346655 5799999864222 11224445555543 678999999
Q ss_pred CCC----------CHHHHHHHHHHHH
Q 030225 138 SAH----------NVNELFYEIAKRL 153 (181)
Q Consensus 138 ~~~----------gi~~~~~~l~~~~ 153 (181)
++. ++.++++.|...+
T Consensus 177 ~g~n~~~~~~w~~~~~~Ll~~l~~~~ 202 (396)
T PRK12735 177 KALEGDDDEEWEAKILELMDAVDSYI 202 (396)
T ss_pred ccccCCCCCcccccHHHHHHHHHhcC
Confidence 984 6777777776654
No 228
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.69 E-value=7.7e-16 Score=120.98 Aligned_cols=106 Identities=17% Similarity=0.169 Sum_probs=73.3
Q ss_pred CCCchhHHHHHHhhCCCCCcc-----------------c---cceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchh
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQ-----------------E---STIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPM 60 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~-----------------~---~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~ 60 (181)
+++|||||+++|+........ . ..-|.++......+....+++++|||||+..|......
T Consensus 19 ~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG~~df~~~~~~ 98 (526)
T PRK00741 19 PDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPGHEDFSEDTYR 98 (526)
T ss_pred CCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCCchhhHHHHHH
Confidence 589999999999742111000 0 11133444555556666788999999999988887777
Q ss_pred hccCCcEEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCc
Q 030225 61 YYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLE 110 (181)
Q Consensus 61 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~ 110 (181)
+++.+|++|+|+|+++.-. .....++..... .+.|+++++||+|+.
T Consensus 99 ~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~~~---~~iPiiv~iNK~D~~ 144 (526)
T PRK00741 99 TLTAVDSALMVIDAAKGVE-PQTRKLMEVCRL---RDTPIFTFINKLDRD 144 (526)
T ss_pred HHHHCCEEEEEEecCCCCC-HHHHHHHHHHHh---cCCCEEEEEECCccc
Confidence 8899999999999987532 123344444332 478999999999973
No 229
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.68 E-value=7.9e-16 Score=100.11 Aligned_cols=128 Identities=20% Similarity=0.245 Sum_probs=88.9
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCh----hhhhccchhhccCCcEEEEEEECCC
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ----ERYHSLAPMYYRGAAAAVVVYDITS 76 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~----~~~~~~~~~~~~~~d~~i~v~d~~~ 76 (181)
+|||||||+++|.+... .+..|..+.+ .+ .++||||. ..+....-....+||++++|.|+++
T Consensus 10 ~g~GKTTL~q~L~~~~~--~~~KTq~i~~-------~~-----~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~dat~ 75 (143)
T PF10662_consen 10 SGSGKTTLAQALNGEEI--RYKKTQAIEY-------YD-----NTIDTPGEYIENPRFYHALIVTAQDADVVLLLQDATE 75 (143)
T ss_pred CCCCHHHHHHHHcCCCC--CcCccceeEe-------cc-----cEEECChhheeCHHHHHHHHHHHhhCCEEEEEecCCC
Confidence 58999999999998765 3334443222 11 36899995 2233323344568999999999998
Q ss_pred hhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCC-eEEEEecCCCCCHHHHHHHHH
Q 030225 77 MDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGL-SFLETSAKSAHNVNELFYEIA 150 (181)
Q Consensus 77 ~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~~~~~l~ 150 (181)
+.+.- -..+... -++|++=|+||+|+.. .+...+.+.++.+..|+ .+|++|+.+|+|++++.++|-
T Consensus 76 ~~~~~-----pP~fa~~--f~~pvIGVITK~Dl~~-~~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~~L~ 142 (143)
T PF10662_consen 76 PRSVF-----PPGFASM--FNKPVIGVITKIDLPS-DDANIERAKKWLKNAGVKEIFEVSAVTGEGIEELKDYLE 142 (143)
T ss_pred CCccC-----Cchhhcc--cCCCEEEEEECccCcc-chhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHHHHh
Confidence 65321 0111111 3579999999999963 23345667778888886 489999999999999999884
No 230
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.67 E-value=2.8e-15 Score=106.23 Aligned_cols=108 Identities=16% Similarity=0.133 Sum_probs=71.0
Q ss_pred EEEEEEEeCCChhhhhccchhhcc--CCcEEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccC--
Q 030225 40 TIKFDIWDTAGQERYHSLAPMYYR--GAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKV-- 115 (181)
Q Consensus 40 ~~~~~i~D~~G~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~-- 115 (181)
...+.++|+||+..|.......+. .+|++++|+|+..+.. .....++..+... +.|+++++||+|+......
T Consensus 83 ~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~-~~d~~~l~~l~~~---~ip~ivvvNK~D~~~~~~~~~ 158 (224)
T cd04165 83 SKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGII-GMTKEHLGLALAL---NIPVFVVVTKIDLAPANILQE 158 (224)
T ss_pred CcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCEEEEEECccccCHHHHHH
Confidence 357889999999888655444443 6899999999876432 2223444444333 5789999999998542211
Q ss_pred CHHHHHHHHHH--------------------------cCCeEEEEecCCCCCHHHHHHHHHH
Q 030225 116 KNEEGELYAQE--------------------------NGLSFLETSAKSAHNVNELFYEIAK 151 (181)
Q Consensus 116 ~~~~~~~~~~~--------------------------~~~~~~~~Sa~~~~gi~~~~~~l~~ 151 (181)
...+...+.+. ..+++|.+||.+|+|++++...|..
T Consensus 159 ~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 159 TLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred HHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 11122222220 1248999999999999999988743
No 231
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.67 E-value=1e-15 Score=116.95 Aligned_cols=149 Identities=19% Similarity=0.188 Sum_probs=99.6
Q ss_pred CchhHHHHHHhhCCCCCcc-------------ccceeeeEEEEEEEEC---CeEEEEEEEeCCChhhhhccchhhccCCc
Q 030225 3 TGKTSLVLRFVKGQFFDFQ-------------ESTIGAAFFTQVLSLN---EVTIKFDIWDTAGQERYHSLAPMYYRGAA 66 (181)
Q Consensus 3 ~GKttLl~~l~~~~~~~~~-------------~~t~~~~~~~~~~~~~---~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 66 (181)
=|||||..+|+........ ..--|+++...+..+- +..+.++++|||||.+|.......+..|+
T Consensus 71 HGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDFs~EVsRslaac~ 150 (650)
T KOG0462|consen 71 HGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDFSGEVSRSLAACD 150 (650)
T ss_pred CCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcccccceehehhhhcC
Confidence 3999999999864331110 0112444444443333 45599999999999999999999999999
Q ss_pred EEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCC-HHHHHHHHHHcCCeEEEEecCCCCCHHHH
Q 030225 67 AAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVK-NEEGELYAQENGLSFLETSAKSAHNVNEL 145 (181)
Q Consensus 67 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~ 145 (181)
++++|+|++.+---+.+-.++..+ ..+..++.|+||+|+...+... ..+...........++.+||++|.|+.++
T Consensus 151 G~lLvVDA~qGvqAQT~anf~lAf----e~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~~~~i~vSAK~G~~v~~l 226 (650)
T KOG0462|consen 151 GALLVVDASQGVQAQTVANFYLAF----EAGLAIIPVLNKIDLPSADPERVENQLFELFDIPPAEVIYVSAKTGLNVEEL 226 (650)
T ss_pred ceEEEEEcCcCchHHHHHHHHHHH----HcCCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCccceEEEEeccCccHHHH
Confidence 999999998643322222222222 2456799999999996543311 11222222222357899999999999999
Q ss_pred HHHHHHHHHh
Q 030225 146 FYEIAKRLAE 155 (181)
Q Consensus 146 ~~~l~~~~~~ 155 (181)
++.+++.+..
T Consensus 227 L~AII~rVPp 236 (650)
T KOG0462|consen 227 LEAIIRRVPP 236 (650)
T ss_pred HHHHHhhCCC
Confidence 9998876643
No 232
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.67 E-value=1.6e-15 Score=109.63 Aligned_cols=151 Identities=20% Similarity=0.179 Sum_probs=102.5
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChh-----hhhccch---hhc-cCCcEEEEE
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE-----RYHSLAP---MYY-RGAAAAVVV 71 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~-----~~~~~~~---~~~-~~~d~~i~v 71 (181)
||||||||++++.+.+.... +...++-......++.+..+++++||||-- +.+.... ..+ .=.++++|+
T Consensus 177 PNVGKSSlv~~lT~AkpEvA--~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~hl~~~IlF~ 254 (346)
T COG1084 177 PNVGKSSLVRKLTTAKPEVA--PYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAILALRHLAGVILFL 254 (346)
T ss_pred CCCcHHHHHHHHhcCCCccC--CCCccccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHHHHHHHHhcCeEEEE
Confidence 89999999999998765433 222333344455566666789999999941 1111110 011 125889999
Q ss_pred EECCC--hhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcC-CeEEEEecCCCCCHHHHHHH
Q 030225 72 YDITS--MDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYE 148 (181)
Q Consensus 72 ~d~~~--~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~~~~~ 148 (181)
+|++. .-+.+....++..+.... ..|+++|.||+|..+...+. +...+...-+ .....+++..+.+++.+...
T Consensus 255 ~D~Se~cgy~lE~Q~~L~~eIk~~f--~~p~v~V~nK~D~~~~e~~~--~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 330 (346)
T COG1084 255 FDPSETCGYSLEEQISLLEEIKELF--KAPIVVVINKIDIADEEKLE--EIEASVLEEGGEEPLKISATKGCGLDKLREE 330 (346)
T ss_pred EcCccccCCCHHHHHHHHHHHHHhc--CCCeEEEEecccccchhHHH--HHHHHHHhhccccccceeeeehhhHHHHHHH
Confidence 99985 356788888889998875 38999999999986544432 2232233334 44788899999999988888
Q ss_pred HHHHHHhhC
Q 030225 149 IAKRLAEVN 157 (181)
Q Consensus 149 l~~~~~~~~ 157 (181)
+...+.+..
T Consensus 331 v~~~a~~~~ 339 (346)
T COG1084 331 VRKTALEPL 339 (346)
T ss_pred HHHHhhchh
Confidence 887765543
No 233
>CHL00071 tufA elongation factor Tu
Probab=99.67 E-value=2e-15 Score=115.97 Aligned_cols=137 Identities=15% Similarity=0.101 Sum_probs=89.3
Q ss_pred CCCchhHHHHHHhhCCCCCc--------------cccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCc
Q 030225 1 MGTGKTSLVLRFVKGQFFDF--------------QESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAA 66 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~--------------~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 66 (181)
+++|||||+++|++...... ....-|.++......+.....++.++|+||+..|.......+..+|
T Consensus 21 ~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~~~~~~~~~~~~D 100 (409)
T CHL00071 21 VDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADYVKNMITGAAQMD 100 (409)
T ss_pred CCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHHHHHHHHHHHhCC
Confidence 68999999999997422100 0011344444444555556668889999999888777677788999
Q ss_pred EEEEEEECCChhHHHHHHHHHHHHHHhCCCCce-EEEEEeCCCCcccccC---CHHHHHHHHHHcC-----CeEEEEecC
Q 030225 67 AAVVVYDITSMDSFERAKKWVQELQRQGNPNLI-MFLVANKVDLEEKRKV---KNEEGELYAQENG-----LSFLETSAK 137 (181)
Q Consensus 67 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivi~nK~D~~~~~~~---~~~~~~~~~~~~~-----~~~~~~Sa~ 137 (181)
++++|+|+...-. ......+..+... +.| +++++||+|+.+..+. ...+...+.+..+ ++++.+||.
T Consensus 101 ~~ilVvda~~g~~-~qt~~~~~~~~~~---g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ii~~Sa~ 176 (409)
T CHL00071 101 GAILVVSAADGPM-PQTKEHILLAKQV---GVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDFPGDDIPIVSGSAL 176 (409)
T ss_pred EEEEEEECCCCCc-HHHHHHHHHHHHc---CCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCCCCCcceEEEcchh
Confidence 9999999885422 2233344444333 457 6788999998653221 1234445555543 679999999
Q ss_pred CCCC
Q 030225 138 SAHN 141 (181)
Q Consensus 138 ~~~g 141 (181)
+|.+
T Consensus 177 ~g~n 180 (409)
T CHL00071 177 LALE 180 (409)
T ss_pred hccc
Confidence 8864
No 234
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.66 E-value=2.8e-16 Score=114.57 Aligned_cols=145 Identities=18% Similarity=0.129 Sum_probs=90.1
Q ss_pred CCCchhHHHHHHhhCCCCCccccc----------------eeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccC
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQEST----------------IGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 64 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t----------------~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 64 (181)
+|+|||||+++|+........... .+.+.......+....+++.+|||||+..+...+..++..
T Consensus 8 ~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~~~~~l~~ 87 (268)
T cd04170 8 SGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGETRAALRA 87 (268)
T ss_pred CCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHHHHHHHHH
Confidence 699999999999854322111100 0122222333344455688999999998887778888999
Q ss_pred CcEEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeE--EEEecCCCCCH
Q 030225 65 AAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSF--LETSAKSAHNV 142 (181)
Q Consensus 65 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~--~~~Sa~~~~gi 142 (181)
+|++++|+|+++........ .+..+.. .+.|.++++||+|+.... ..+....+.+..+.++ +.++..++.++
T Consensus 88 aD~~i~Vvd~~~g~~~~~~~-~~~~~~~---~~~p~iivvNK~D~~~~~--~~~~~~~l~~~~~~~~~~~~ip~~~~~~~ 161 (268)
T cd04170 88 ADAALVVVSAQSGVEVGTEK-LWEFADE---AGIPRIIFINKMDRERAD--FDKTLAALQEAFGRPVVPLQLPIGEGDDF 161 (268)
T ss_pred CCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCCEEEEEECCccCCCC--HHHHHHHHHHHhCCCeEEEEecccCCCce
Confidence 99999999999765443322 2233332 367999999999986431 1222333334445444 44456677776
Q ss_pred HHHHHHHHH
Q 030225 143 NELFYEIAK 151 (181)
Q Consensus 143 ~~~~~~l~~ 151 (181)
..+.+.+..
T Consensus 162 ~~~vd~~~~ 170 (268)
T cd04170 162 KGVVDLLTE 170 (268)
T ss_pred eEEEEcccC
Confidence 666555544
No 235
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.66 E-value=5.8e-15 Score=122.60 Aligned_cols=145 Identities=22% Similarity=0.205 Sum_probs=99.3
Q ss_pred CchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeE----------------EEEEEEeCCChhhhhccchhhccCCc
Q 030225 3 TGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVT----------------IKFDIWDTAGQERYHSLAPMYYRGAA 66 (181)
Q Consensus 3 ~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~----------------~~~~i~D~~G~~~~~~~~~~~~~~~d 66 (181)
++|||||.++.+......--..++..+....+..+... -.+.||||||++.|..+....+..+|
T Consensus 472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aD 551 (1049)
T PRK14845 472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLAD 551 (1049)
T ss_pred cccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCC
Confidence 57999999999888766555555555555555544211 12789999999999888888888999
Q ss_pred EEEEEEECCC---hhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCH----------------HHHH----HH
Q 030225 67 AAVVVYDITS---MDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKN----------------EEGE----LY 123 (181)
Q Consensus 67 ~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~----------------~~~~----~~ 123 (181)
++++|+|+++ +.+++.+ ..+.. .++|+++++||+|+...+.... .+.. ..
T Consensus 552 ivlLVVDa~~Gi~~qT~e~I----~~lk~---~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v 624 (1049)
T PRK14845 552 LAVLVVDINEGFKPQTIEAI----NILRQ---YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYEL 624 (1049)
T ss_pred EEEEEEECcccCCHhHHHHH----HHHHH---cCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 9999999986 3344332 22222 3579999999999864322100 0000 00
Q ss_pred ---HHHc---------------CCeEEEEecCCCCCHHHHHHHHHHHHH
Q 030225 124 ---AQEN---------------GLSFLETSAKSAHNVNELFYEIAKRLA 154 (181)
Q Consensus 124 ---~~~~---------------~~~~~~~Sa~~~~gi~~~~~~l~~~~~ 154 (181)
..+. .++++++||++|+|+.+++.+|.....
T Consensus 625 ~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~~ 673 (1049)
T PRK14845 625 IGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLAQ 673 (1049)
T ss_pred hhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhhH
Confidence 1111 358899999999999999998876544
No 236
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.66 E-value=8.9e-16 Score=111.56 Aligned_cols=107 Identities=18% Similarity=0.108 Sum_probs=73.9
Q ss_pred CCCchhHHHHHHhhCCCCCcc-------------c---cceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccC
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQ-------------E---STIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 64 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~-------------~---~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 64 (181)
+|+|||||+++|+........ . ..-|+++......+.....++.+|||||+..+...+...++.
T Consensus 8 ~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~ 87 (270)
T cd01886 8 IDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIEVERSLRV 87 (270)
T ss_pred CCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHHHHHHHHH
Confidence 689999999999752221100 0 112344444444555556789999999999888888899999
Q ss_pred CcEEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcc
Q 030225 65 AAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEE 111 (181)
Q Consensus 65 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~ 111 (181)
+|++++|+|+.+...-. ....+..+.. .++|.++++||+|+.+
T Consensus 88 aD~ailVVDa~~g~~~~-t~~~~~~~~~---~~~p~ivviNK~D~~~ 130 (270)
T cd01886 88 LDGAVAVFDAVAGVEPQ-TETVWRQADR---YNVPRIAFVNKMDRTG 130 (270)
T ss_pred cCEEEEEEECCCCCCHH-HHHHHHHHHH---cCCCEEEEEECCCCCC
Confidence 99999999998743221 2333444433 3578999999999864
No 237
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.65 E-value=1.2e-15 Score=107.85 Aligned_cols=156 Identities=18% Similarity=0.252 Sum_probs=95.6
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEE-CCeEEEEEEEeCCChhhhhc-----cchhhccCCcEEEEEEEC
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSL-NEVTIKFDIWDTAGQERYHS-----LAPMYYRGAAAAVVVYDI 74 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~-----~~~~~~~~~d~~i~v~d~ 74 (181)
++|||||+.+.+.++..+.+. ...+.+.......+ ..+++.+++||+||+..+.. .....+++++++|||+|+
T Consensus 8 ~~SGKTSi~~vIF~~~~p~dT-~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~LIyV~D~ 86 (232)
T PF04670_consen 8 RRSGKTSIRSVIFHKYSPRDT-LRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGVLIYVFDA 86 (232)
T ss_dssp TTSSHHHHHHHHHS---GGGG-GG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEEEEEEET
T ss_pred CCCChhhHHHHHHcCCCchhc-cccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCEEEEEEEc
Confidence 589999998777755443333 44444444444444 24566899999999864433 356779999999999999
Q ss_pred CChhH---HHHHHHHHHHHHHhCCCCceEEEEEeCCCCccc--ccC----CHHHHHHHHHHcC---CeEEEEecCCCCCH
Q 030225 75 TSMDS---FERAKKWVQELQRQGNPNLIMFLVANKVDLEEK--RKV----KNEEGELYAQENG---LSFLETSAKSAHNV 142 (181)
Q Consensus 75 ~~~~s---~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~--~~~----~~~~~~~~~~~~~---~~~~~~Sa~~~~gi 142 (181)
.+.+. +..+...+..+.+. .++..+.++++|.|+... +.. ..+.....+...+ +.++.+|..+ +.+
T Consensus 87 qs~~~~~~l~~~~~~i~~l~~~-sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TSI~D-~Sl 164 (232)
T PF04670_consen 87 QSDDYDEDLAYLSDCIEALRQY-SPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTSIWD-ESL 164 (232)
T ss_dssp T-STCHHHHHHHHHHHHHHHHH-STT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-TTS-THH
T ss_pred ccccHHHHHHHHHHHHHHHHHh-CCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEeccCcC-cHH
Confidence 95443 33344445555555 488999999999998532 111 1122333444455 7899999999 578
Q ss_pred HHHHHHHHHHHHhhCCC
Q 030225 143 NELFYEIAKRLAEVNPS 159 (181)
Q Consensus 143 ~~~~~~l~~~~~~~~~~ 159 (181)
-+.+..+++.+..+.+.
T Consensus 165 y~A~S~Ivq~LiP~~~~ 181 (232)
T PF04670_consen 165 YEAWSKIVQKLIPNLST 181 (232)
T ss_dssp HHHHHHHHHTTSTTHCC
T ss_pred HHHHHHHHHHHcccHHH
Confidence 88888888877765443
No 238
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.65 E-value=3.3e-15 Score=108.57 Aligned_cols=156 Identities=19% Similarity=0.144 Sum_probs=98.6
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhh----hhccchh---hccCCcEEEEEEE
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER----YHSLAPM---YYRGAAAAVVVYD 73 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----~~~~~~~---~~~~~d~~i~v~d 73 (181)
||+||||||+++...+...-.-|.++..-..-.+.+ ...-.|.+-|+||.-+ -..+-.. .++.+.++++|+|
T Consensus 168 PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~-~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~vL~hviD 246 (369)
T COG0536 168 PNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRV-DGGESFVVADIPGLIEGASEGVGLGLRFLRHIERTRVLLHVID 246 (369)
T ss_pred CCCcHHHHHHHHhhcCCcccCCccccccCcccEEEe-cCCCcEEEecCcccccccccCCCccHHHHHHHHhhheeEEEEe
Confidence 899999999999986543211121111111111222 2223578999999532 1222233 3567899999999
Q ss_pred CCChh---HHHHHHHHHHHHHHhC--CCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEE-EecCCCCCHHHHHH
Q 030225 74 ITSMD---SFERAKKWVQELQRQG--NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLE-TSAKSAHNVNELFY 147 (181)
Q Consensus 74 ~~~~~---s~~~~~~~~~~~~~~~--~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~-~Sa~~~~gi~~~~~ 147 (181)
++..+ ..+..+....++..+. ..++|.++++||+|+....+........+.+..+...+. +||.+++|++++..
T Consensus 247 ~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~ISa~t~~g~~~L~~ 326 (369)
T COG0536 247 LSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLISALTREGLDELLR 326 (369)
T ss_pred cCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceeeehhcccCHHHHHH
Confidence 98644 3455555555554432 267899999999996554443334444455555544332 99999999999999
Q ss_pred HHHHHHHhhC
Q 030225 148 EIAKRLAEVN 157 (181)
Q Consensus 148 ~l~~~~~~~~ 157 (181)
.+.+.+.+..
T Consensus 327 ~~~~~l~~~~ 336 (369)
T COG0536 327 ALAELLEETK 336 (369)
T ss_pred HHHHHHHHhh
Confidence 9999887774
No 239
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.65 E-value=3e-15 Score=112.78 Aligned_cols=147 Identities=18% Similarity=0.169 Sum_probs=101.6
Q ss_pred CchhHHHHHHhhCCCC---------------CccccceeeeEEEEEEEE---CCeEEEEEEEeCCChhhhhccchhhccC
Q 030225 3 TGKTSLVLRFVKGQFF---------------DFQESTIGAAFFTQVLSL---NEVTIKFDIWDTAGQERYHSLAPMYYRG 64 (181)
Q Consensus 3 ~GKttLl~~l~~~~~~---------------~~~~~t~~~~~~~~~~~~---~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 64 (181)
=|||||..||+..... .+....+++-.....+.+ ++..+.++++|||||..|.......+..
T Consensus 20 HGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDFsYEVSRSLAA 99 (603)
T COG0481 20 HGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFSYEVSRSLAA 99 (603)
T ss_pred CCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccceEEEehhhHhh
Confidence 3999999999853221 111122332222223222 4578999999999999999888888999
Q ss_pred CcEEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCC---eEEEEecCCCCC
Q 030225 65 AAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGL---SFLETSAKSAHN 141 (181)
Q Consensus 65 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~---~~~~~Sa~~~~g 141 (181)
|.+.++|+|++.+-.-+.+-..+..+ ..+..++-|+||+||..... +....++-.-.|+ ..+.+||++|.|
T Consensus 100 CEGalLvVDAsQGveAQTlAN~YlAl----e~~LeIiPViNKIDLP~Adp--ervk~eIe~~iGid~~dav~~SAKtG~g 173 (603)
T COG0481 100 CEGALLVVDASQGVEAQTLANVYLAL----ENNLEIIPVLNKIDLPAADP--ERVKQEIEDIIGIDASDAVLVSAKTGIG 173 (603)
T ss_pred CCCcEEEEECccchHHHHHHHHHHHH----HcCcEEEEeeecccCCCCCH--HHHHHHHHHHhCCCcchheeEecccCCC
Confidence 99999999999764444444443333 24677999999999965332 2222333344565 468999999999
Q ss_pred HHHHHHHHHHHHHh
Q 030225 142 VNELFYEIAKRLAE 155 (181)
Q Consensus 142 i~~~~~~l~~~~~~ 155 (181)
|+++++.|++.+..
T Consensus 174 I~~iLe~Iv~~iP~ 187 (603)
T COG0481 174 IEDVLEAIVEKIPP 187 (603)
T ss_pred HHHHHHHHHhhCCC
Confidence 99999999887654
No 240
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.64 E-value=2.9e-15 Score=116.71 Aligned_cols=142 Identities=19% Similarity=0.171 Sum_probs=86.9
Q ss_pred CCCchhHHHHHHhhCCCCCcc------------ccc-------------------eeeeEEEEEEEECCeEEEEEEEeCC
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQ------------EST-------------------IGAAFFTQVLSLNEVTIKFDIWDTA 49 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~------------~~t-------------------~~~~~~~~~~~~~~~~~~~~i~D~~ 49 (181)
+++|||||+.+|+........ ..+ -|.++......+.....++.|||||
T Consensus 36 vdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~~~~~i~~iDTP 115 (474)
T PRK05124 36 VDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTP 115 (474)
T ss_pred CCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEeccCCcEEEEEECC
Confidence 589999999999854321110 000 1222333333444556688999999
Q ss_pred ChhhhhccchhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHH----HHHHHH
Q 030225 50 GQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEE----GELYAQ 125 (181)
Q Consensus 50 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~----~~~~~~ 125 (181)
|+..|.......+..+|++++|+|+..+-. ......+..+... ..+|+++++||+|+.+..+....+ ...+..
T Consensus 116 Gh~~f~~~~~~~l~~aD~allVVDa~~G~~-~qt~~~~~l~~~l--g~~~iIvvvNKiD~~~~~~~~~~~i~~~l~~~~~ 192 (474)
T PRK05124 116 GHEQYTRNMATGASTCDLAILLIDARKGVL-DQTRRHSFIATLL--GIKHLVVAVNKMDLVDYSEEVFERIREDYLTFAE 192 (474)
T ss_pred CcHHHHHHHHHHHhhCCEEEEEEECCCCcc-ccchHHHHHHHHh--CCCceEEEEEeeccccchhHHHHHHHHHHHHHHH
Confidence 998886655556799999999999876421 1111222222222 124788999999986432211122 222333
Q ss_pred Hc----CCeEEEEecCCCCCHHHH
Q 030225 126 EN----GLSFLETSAKSAHNVNEL 145 (181)
Q Consensus 126 ~~----~~~~~~~Sa~~~~gi~~~ 145 (181)
.. ..+++++||++|+|+.++
T Consensus 193 ~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 193 QLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred hcCCCCCceEEEEEeecCCCcccc
Confidence 33 367999999999999765
No 241
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.64 E-value=5.6e-15 Score=116.18 Aligned_cols=105 Identities=17% Similarity=0.149 Sum_probs=73.3
Q ss_pred CCCchhHHHHHHhhCCCCCccc--------------------cceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchh
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQE--------------------STIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPM 60 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~--------------------~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~ 60 (181)
+++|||||+++|+......... ...|.++......+++..+++.+|||||+..|......
T Consensus 20 ~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTPG~~df~~~~~~ 99 (527)
T TIGR00503 20 PDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTPGHEDFSEDTYR 99 (527)
T ss_pred CCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECCChhhHHHHHHH
Confidence 6899999999986421111000 11244555556666777789999999999888876677
Q ss_pred hccCCcEEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCC
Q 030225 61 YYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDL 109 (181)
Q Consensus 61 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~ 109 (181)
.+..+|++|+|+|+++.- ......++..... .++|+++++||+|+
T Consensus 100 ~l~~aD~aIlVvDa~~gv-~~~t~~l~~~~~~---~~~PiivviNKiD~ 144 (527)
T TIGR00503 100 TLTAVDNCLMVIDAAKGV-ETRTRKLMEVTRL---RDTPIFTFMNKLDR 144 (527)
T ss_pred HHHhCCEEEEEEECCCCC-CHHHHHHHHHHHh---cCCCEEEEEECccc
Confidence 889999999999998641 1223344443322 46899999999997
No 242
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.64 E-value=7.4e-15 Score=107.13 Aligned_cols=133 Identities=14% Similarity=0.131 Sum_probs=86.1
Q ss_pred CCCchhHHHHHHhhCCCCCc----------cccceeeeEEEEEEEECCeEEEEEEEeCCChhhh----------------
Q 030225 1 MGTGKTSLVLRFVKGQFFDF----------QESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERY---------------- 54 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~----------~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~---------------- 54 (181)
+|+|||||+|+|++..+... ..+|++.......+..++..+++.+|||||-...
T Consensus 13 sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~~~i~~yi~~ 92 (276)
T cd01850 13 SGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCWKPIVDYIDD 92 (276)
T ss_pred CCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhHHHHHHHHHH
Confidence 69999999999998876543 3455556666666667788899999999993211
Q ss_pred ----------hccchhhcc--CCcEEEEEEECCChhHHHHH-HHHHHHHHHhCCCCceEEEEEeCCCCcc--cccCCHHH
Q 030225 55 ----------HSLAPMYYR--GAAAAVVVYDITSMDSFERA-KKWVQELQRQGNPNLIMFLVANKVDLEE--KRKVKNEE 119 (181)
Q Consensus 55 ----------~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivi~nK~D~~~--~~~~~~~~ 119 (181)
...+...+. .+|+++|+++.+.. .+... ...++.+. ..+|+++|+||+|+.. ........
T Consensus 93 q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~-~l~~~D~~~lk~l~----~~v~vi~VinK~D~l~~~e~~~~k~~ 167 (276)
T cd01850 93 QFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGH-GLKPLDIEFMKRLS----KRVNIIPVIAKADTLTPEELKEFKQR 167 (276)
T ss_pred HHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCC-CCCHHHHHHHHHHh----ccCCEEEEEECCCcCCHHHHHHHHHH
Confidence 111112333 46778888886641 11111 22233332 2589999999999854 22334455
Q ss_pred HHHHHHHcCCeEEEEecCC
Q 030225 120 GELYAQENGLSFLETSAKS 138 (181)
Q Consensus 120 ~~~~~~~~~~~~~~~Sa~~ 138 (181)
..+.+..+++.++......
T Consensus 168 i~~~l~~~~i~~~~~~~~~ 186 (276)
T cd01850 168 IMEDIEEHNIKIYKFPEDE 186 (276)
T ss_pred HHHHHHHcCCceECCCCCc
Confidence 6677888899988776543
No 243
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.64 E-value=4.2e-15 Score=115.00 Aligned_cols=115 Identities=18% Similarity=0.209 Sum_probs=80.6
Q ss_pred eeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHHH-------HHHHHHHHHHHhCCCCc
Q 030225 26 GAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFE-------RAKKWVQELQRQGNPNL 98 (181)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~-------~~~~~~~~~~~~~~~~~ 98 (181)
|.+.......+......+.++|+|||.+|.......+..+|++|+|+|+++ ..|+ ..++.+...... ++
T Consensus 70 GiTi~~~~~~~~~~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~-G~~e~g~~~~~qT~eh~~~~~~~---gi 145 (447)
T PLN00043 70 GITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT-GGFEAGISKDGQTREHALLAFTL---GV 145 (447)
T ss_pred CceEEEEEEEecCCCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEccc-CceecccCCCchHHHHHHHHHHc---CC
Confidence 334444455566677889999999999999988889999999999999986 3232 334444433332 44
Q ss_pred -eEEEEEeCCCCccc------ccCCHHHHHHHHHHcC-----CeEEEEecCCCCCHHH
Q 030225 99 -IMFLVANKVDLEEK------RKVKNEEGELYAQENG-----LSFLETSAKSAHNVNE 144 (181)
Q Consensus 99 -p~ivi~nK~D~~~~------~~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~ 144 (181)
++++++||+|+.+. -+...++...++++.+ ++++++||++|+|+.+
T Consensus 146 ~~iIV~vNKmD~~~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 146 KQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred CcEEEEEEcccCCchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 47888999997521 0112345666676665 5799999999999853
No 244
>PRK13351 elongation factor G; Reviewed
Probab=99.64 E-value=4.7e-15 Score=120.77 Aligned_cols=106 Identities=20% Similarity=0.173 Sum_probs=73.8
Q ss_pred CCCchhHHHHHHhhCCCCC-------------cccc---ceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccC
Q 030225 1 MGTGKTSLVLRFVKGQFFD-------------FQES---TIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 64 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~-------------~~~~---t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 64 (181)
+|+|||||+++|+...... .+.+ ..+.++......+.+...++.+|||||+.+|...+..+++.
T Consensus 17 ~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~df~~~~~~~l~~ 96 (687)
T PRK13351 17 IDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHIDFTGEVERSLRV 96 (687)
T ss_pred CCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHHHHHHHHHHHHh
Confidence 5899999999998532110 0000 11222333333444456789999999999998888999999
Q ss_pred CcEEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCc
Q 030225 65 AAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLE 110 (181)
Q Consensus 65 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~ 110 (181)
+|++++|+|+++.........| ..+.. .++|+++++||+|+.
T Consensus 97 aD~~ilVvd~~~~~~~~~~~~~-~~~~~---~~~p~iiviNK~D~~ 138 (687)
T PRK13351 97 LDGAVVVFDAVTGVQPQTETVW-RQADR---YGIPRLIFINKMDRV 138 (687)
T ss_pred CCEEEEEEeCCCCCCHHHHHHH-HHHHh---cCCCEEEEEECCCCC
Confidence 9999999999987665544333 33322 368999999999974
No 245
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.63 E-value=7.8e-15 Score=108.60 Aligned_cols=75 Identities=16% Similarity=0.238 Sum_probs=51.1
Q ss_pred CCCchhHHHHHHhhCCCC------CccccceeeeEEEEE---------------EEECC-eEEEEEEEeCCCh----hhh
Q 030225 1 MGTGKTSLVLRFVKGQFF------DFQESTIGAAFFTQV---------------LSLNE-VTIKFDIWDTAGQ----ERY 54 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~------~~~~~t~~~~~~~~~---------------~~~~~-~~~~~~i~D~~G~----~~~ 54 (181)
||||||||+++|.+.... .+..|++|..+.... ...++ ..+.+++||+||. ..+
T Consensus 7 pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv~ga~~~ 86 (318)
T cd01899 7 PNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLVPGAHEG 86 (318)
T ss_pred CCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCCCCccch
Confidence 799999999999987643 233455554332211 00122 3467999999997 445
Q ss_pred hccchhh---ccCCcEEEEEEECC
Q 030225 55 HSLAPMY---YRGAAAAVVVYDIT 75 (181)
Q Consensus 55 ~~~~~~~---~~~~d~~i~v~d~~ 75 (181)
..+...+ ++++|++++|+|++
T Consensus 87 ~glg~~fL~~ir~aD~ii~Vvd~~ 110 (318)
T cd01899 87 KGLGNKFLDDLRDADALIHVVDAS 110 (318)
T ss_pred hhHHHHHHHHHHHCCEEEEEEeCC
Confidence 5554554 89999999999997
No 246
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.63 E-value=1.9e-14 Score=110.18 Aligned_cols=146 Identities=16% Similarity=0.122 Sum_probs=106.4
Q ss_pred CchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHHHH
Q 030225 3 TGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFER 82 (181)
Q Consensus 3 ~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~ 82 (181)
=||||||..|-+.......-..++..+....+.++.+ -.+.|.|||||..|..|+..-..-+|++++|+.+.|.---+
T Consensus 164 HGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~G-~~iTFLDTPGHaAF~aMRaRGA~vtDIvVLVVAadDGVmpQ- 241 (683)
T KOG1145|consen 164 HGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPSG-KSITFLDTPGHAAFSAMRARGANVTDIVVLVVAADDGVMPQ- 241 (683)
T ss_pred CChhhHHHHHhhCceehhhcCCccceeceEEEecCCC-CEEEEecCCcHHHHHHHHhccCccccEEEEEEEccCCccHh-
Confidence 3999999999987776655555655555666666633 57889999999999999998899999999999988742211
Q ss_pred HHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcC---------CeEEEEecCCCCCHHHHHHHHHHHH
Q 030225 83 AKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENG---------LSFLETSAKSAHNVNELFYEIAKRL 153 (181)
Q Consensus 83 ~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~---------~~~~~~Sa~~~~gi~~~~~~l~~~~ 153 (181)
-++.+......+.|+++.+||+|..+ -..+...+....+| ..++++||++|+|++.+.+.+.-++
T Consensus 242 ---T~EaIkhAk~A~VpiVvAinKiDkp~---a~pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~nl~~L~eaill~A 315 (683)
T KOG1145|consen 242 ---TLEAIKHAKSANVPIVVAINKIDKPG---ANPEKVKRELLSQGIVVEDLGGDVQVIPISALTGENLDLLEEAILLLA 315 (683)
T ss_pred ---HHHHHHHHHhcCCCEEEEEeccCCCC---CCHHHHHHHHHHcCccHHHcCCceeEEEeecccCCChHHHHHHHHHHH
Confidence 12233333346899999999999753 22334433333343 4789999999999999999887655
Q ss_pred Hhh
Q 030225 154 AEV 156 (181)
Q Consensus 154 ~~~ 156 (181)
.-+
T Consensus 316 e~m 318 (683)
T KOG1145|consen 316 EVM 318 (683)
T ss_pred HHh
Confidence 443
No 247
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.62 E-value=4.8e-15 Score=104.68 Aligned_cols=69 Identities=19% Similarity=0.193 Sum_probs=54.0
Q ss_pred CeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCc
Q 030225 38 EVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLE 110 (181)
Q Consensus 38 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~ 110 (181)
+..+.+.+|||||+..|......+++.+|++++|+|++++..... ...+..... .+.|+++++||+|+.
T Consensus 70 ~~~~~i~iiDTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t-~~~l~~~~~---~~~p~ilviNKiD~~ 138 (222)
T cd01885 70 GNEYLINLIDSPGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQT-ETVLRQALK---ERVKPVLVINKIDRL 138 (222)
T ss_pred CCceEEEEECCCCccccHHHHHHHHHhcCeeEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECCCcc
Confidence 447889999999999999988999999999999999997654433 223333322 357899999999975
No 248
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.62 E-value=6.2e-15 Score=113.11 Aligned_cols=111 Identities=22% Similarity=0.184 Sum_probs=72.0
Q ss_pred EEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCc
Q 030225 31 TQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLE 110 (181)
Q Consensus 31 ~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~ 110 (181)
.....+.....++.|||+||+..|.......+..+|++++|+|+..+.. ....+.+..+... ..+++++++||+|+.
T Consensus 70 ~~~~~~~~~~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~-~qt~~~~~~~~~~--~~~~iivviNK~D~~ 146 (406)
T TIGR02034 70 VAYRYFSTDKRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVL-EQTRRHSYIASLL--GIRHVVLAVNKMDLV 146 (406)
T ss_pred eeeEEEccCCeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCc-cccHHHHHHHHHc--CCCcEEEEEEecccc
Confidence 3334444455688999999999887666677889999999999875422 1122222333222 234688899999986
Q ss_pred ccccCC----HHHHHHHHHHcC---CeEEEEecCCCCCHHH
Q 030225 111 EKRKVK----NEEGELYAQENG---LSFLETSAKSAHNVNE 144 (181)
Q Consensus 111 ~~~~~~----~~~~~~~~~~~~---~~~~~~Sa~~~~gi~~ 144 (181)
+..+.. .++...+.+..+ ++++++||++|+|+.+
T Consensus 147 ~~~~~~~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 147 DYDEEVFENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred cchHHHHHHHHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 422211 122223334444 4699999999999885
No 249
>PLN03126 Elongation factor Tu; Provisional
Probab=99.62 E-value=1.6e-14 Score=112.25 Aligned_cols=137 Identities=15% Similarity=0.107 Sum_probs=88.5
Q ss_pred CCCchhHHHHHHhhCCC------CC--------ccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCc
Q 030225 1 MGTGKTSLVLRFVKGQF------FD--------FQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAA 66 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~------~~--------~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 66 (181)
+++|||||+++|+.... .. .....-|.++......++....++.++|+||+..|.......+..+|
T Consensus 90 vd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f~~~~~~g~~~aD 169 (478)
T PLN03126 90 VDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMD 169 (478)
T ss_pred CCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHHHHHHHHHHhhCC
Confidence 58999999999995211 00 00122344444444444445568899999999998877777788999
Q ss_pred EEEEEEECCChhHHHHHHHHHHHHHHhCCCCce-EEEEEeCCCCcccccC---CHHHHHHHHHHc-----CCeEEEEecC
Q 030225 67 AAVVVYDITSMDSFERAKKWVQELQRQGNPNLI-MFLVANKVDLEEKRKV---KNEEGELYAQEN-----GLSFLETSAK 137 (181)
Q Consensus 67 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivi~nK~D~~~~~~~---~~~~~~~~~~~~-----~~~~~~~Sa~ 137 (181)
++++|+|+.+... ...+.++..+... ++| +++++||+|+.+..+. ...+...+.+.. +++++.+||.
T Consensus 170 ~ailVVda~~G~~-~qt~e~~~~~~~~---gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~vp~Sa~ 245 (478)
T PLN03126 170 GAILVVSGADGPM-PQTKEHILLAKQV---GVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEFPGDDIPIISGSAL 245 (478)
T ss_pred EEEEEEECCCCCc-HHHHHHHHHHHHc---CCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCCCcCcceEEEEEcc
Confidence 9999999986532 2234444444333 456 7788999998642221 122444455543 4679999999
Q ss_pred CCCC
Q 030225 138 SAHN 141 (181)
Q Consensus 138 ~~~g 141 (181)
++.+
T Consensus 246 ~g~n 249 (478)
T PLN03126 246 LALE 249 (478)
T ss_pred cccc
Confidence 8753
No 250
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.61 E-value=2.4e-14 Score=99.84 Aligned_cols=148 Identities=18% Similarity=0.156 Sum_probs=85.9
Q ss_pred CCCchhHHHHHHhhCCCCCccccceee---eEEEEEEEECCeEEEEEEEeCCChhhhhc-----cchhhccCCcEEEEEE
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGA---AFFTQVLSLNEVTIKFDIWDTAGQERYHS-----LAPMYYRGAAAAVVVY 72 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~---~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-----~~~~~~~~~d~~i~v~ 72 (181)
+|+|||||+|+|.+.........+++. +.....+... ....+.+||+||...... +....+.++|+++++.
T Consensus 10 ~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~~d~~l~v~ 88 (197)
T cd04104 10 SGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHP-KFPNVTLWDLPGIGSTAFPPDDYLEEMKFSEYDFFIIIS 88 (197)
T ss_pred CCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecC-CCCCceEEeCCCCCcccCCHHHHHHHhCccCcCEEEEEe
Confidence 699999999999986543322222221 1111111111 123678999999643222 1222367889999985
Q ss_pred ECCChhHHHHH-HHHHHHHHHhCCCCceEEEEEeCCCCccccc-----------CCHHHHHHH----HHHcC---CeEEE
Q 030225 73 DITSMDSFERA-KKWVQELQRQGNPNLIMFLVANKVDLEEKRK-----------VKNEEGELY----AQENG---LSFLE 133 (181)
Q Consensus 73 d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~-----------~~~~~~~~~----~~~~~---~~~~~ 133 (181)
+. ++... ..|++.+... +.|+++|+||+|+....+ ...++.... ....+ .++|.
T Consensus 89 ~~----~~~~~d~~~~~~l~~~---~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~p~v~~ 161 (197)
T cd04104 89 ST----RFSSNDVKLAKAIQCM---GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAGVSEPPVFL 161 (197)
T ss_pred CC----CCCHHHHHHHHHHHHh---CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcCCCCCCEEE
Confidence 42 23333 3444545443 578999999999842111 001111111 11212 36899
Q ss_pred EecC--CCCCHHHHHHHHHHHHHhh
Q 030225 134 TSAK--SAHNVNELFYEIAKRLAEV 156 (181)
Q Consensus 134 ~Sa~--~~~gi~~~~~~l~~~~~~~ 156 (181)
+|+. .+.|+..+.+.++..+.+.
T Consensus 162 vS~~~~~~~~~~~l~~~~~~~l~~~ 186 (197)
T cd04104 162 VSNFDPSDYDFPKLRETLLKDLPAH 186 (197)
T ss_pred EeCCChhhcChHHHHHHHHHHhhHH
Confidence 9999 5689999999999888764
No 251
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.61 E-value=9.1e-15 Score=113.00 Aligned_cols=112 Identities=13% Similarity=0.137 Sum_probs=77.1
Q ss_pred EEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccC--CHH
Q 030225 41 IKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKV--KNE 118 (181)
Q Consensus 41 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~--~~~ 118 (181)
.++.|+|+||++.|.......+..+|++++|+|+.++.......+.+..+... .-+|+++++||+|+.+.... ..+
T Consensus 117 ~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~l--gi~~iIVvlNKiDlv~~~~~~~~~~ 194 (460)
T PTZ00327 117 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIM--KLKHIIILQNKIDLVKEAQAQDQYE 194 (460)
T ss_pred ceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHc--CCCcEEEEEecccccCHHHHHHHHH
Confidence 36899999999998877777788999999999998642222223333333222 23468899999998642211 112
Q ss_pred HHHHHHHH---cCCeEEEEecCCCCCHHHHHHHHHHHHH
Q 030225 119 EGELYAQE---NGLSFLETSAKSAHNVNELFYEIAKRLA 154 (181)
Q Consensus 119 ~~~~~~~~---~~~~~~~~Sa~~~~gi~~~~~~l~~~~~ 154 (181)
+...+.+. .+.+++++||++|+|++.+++.|.+.+.
T Consensus 195 ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp 233 (460)
T PTZ00327 195 EIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIP 233 (460)
T ss_pred HHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCC
Confidence 23333322 2578999999999999999999987554
No 252
>PRK00049 elongation factor Tu; Reviewed
Probab=99.61 E-value=3.2e-14 Score=108.86 Aligned_cols=148 Identities=15% Similarity=0.123 Sum_probs=94.1
Q ss_pred CCCchhHHHHHHhhCCCC---C-----------ccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCc
Q 030225 1 MGTGKTSLVLRFVKGQFF---D-----------FQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAA 66 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~---~-----------~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 66 (181)
+++|||||+++|+..... . .....-|.+.......+.....++.++||||+..|.......+..+|
T Consensus 21 vd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f~~~~~~~~~~aD 100 (396)
T PRK00049 21 VDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADYVKNMITGAAQMD 100 (396)
T ss_pred CCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHHHHHHHhhhccCC
Confidence 589999999999863110 0 00012244444445555556668899999999888776667789999
Q ss_pred EEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEE-EEEeCCCCcccccC---CHHHHHHHHHHc-----CCeEEEEecC
Q 030225 67 AAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMF-LVANKVDLEEKRKV---KNEEGELYAQEN-----GLSFLETSAK 137 (181)
Q Consensus 67 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i-vi~nK~D~~~~~~~---~~~~~~~~~~~~-----~~~~~~~Sa~ 137 (181)
++++|+|+.++-. .....++..+... +.|.+ +++||+|+.+..+. ...+...+.... +++++.+||+
T Consensus 101 ~~llVVDa~~g~~-~qt~~~~~~~~~~---g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~iv~iSa~ 176 (396)
T PRK00049 101 GAILVVSAADGPM-PQTREHILLARQV---GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFPGDDTPIIRGSAL 176 (396)
T ss_pred EEEEEEECCCCCc-hHHHHHHHHHHHc---CCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCCCccCCcEEEeecc
Confidence 9999999986422 2233444444333 46765 57999998642221 122334444433 3689999999
Q ss_pred CCC----------CHHHHHHHHHHH
Q 030225 138 SAH----------NVNELFYEIAKR 152 (181)
Q Consensus 138 ~~~----------gi~~~~~~l~~~ 152 (181)
++. |+.++++.|...
T Consensus 177 ~g~~~~~~~~w~~~~~~ll~~l~~~ 201 (396)
T PRK00049 177 KALEGDDDEEWEKKILELMDAVDSY 201 (396)
T ss_pred cccCCCCcccccccHHHHHHHHHhc
Confidence 875 456666666554
No 253
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.60 E-value=2e-15 Score=116.04 Aligned_cols=153 Identities=22% Similarity=0.300 Sum_probs=113.7
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
.|+|||||+-+|....+++...+....-.-. ..+.-..+...|.|++....-+.....-++.+|++.+||++++++++
T Consensus 18 ~G~GKtSLImSL~~eef~~~VP~rl~~i~IP--advtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~lvyavd~~~T~ 95 (625)
T KOG1707|consen 18 EGVGKTSLIMSLLEEEFVDAVPRRLPRILIP--ADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVICLVYAVDDESTV 95 (625)
T ss_pred CCccHHHHHHHHHhhhccccccccCCccccC--CccCcCcCceEEEecccccchhHHHHHHHhhcCEEEEEEecCChHHh
Confidence 4899999999999999987665443211111 22222334577999986655444446678999999999999999999
Q ss_pred HHH-HHHHHHHHHhCC--CCceEEEEEeCCCCcccccCCHHH-HHHHHHHcC-C-eEEEEecCCCCCHHHHHHHHHHHHH
Q 030225 81 ERA-KKWVQELQRQGN--PNLIMFLVANKVDLEEKRKVKNEE-GELYAQENG-L-SFLETSAKSAHNVNELFYEIAKRLA 154 (181)
Q Consensus 81 ~~~-~~~~~~~~~~~~--~~~p~ivi~nK~D~~~~~~~~~~~-~~~~~~~~~-~-~~~~~Sa~~~~gi~~~~~~l~~~~~ 154 (181)
+.+ ..|+..++.... .++|+|++|||+|.........+. ...++.++. + ..++|||++-.++.++|....+++.
T Consensus 96 D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciecSA~~~~n~~e~fYyaqKaVi 175 (625)
T KOG1707|consen 96 DRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIECSALTLANVSELFYYAQKAVI 175 (625)
T ss_pred hhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhhhhhhhhhhHhhhhhhhheee
Confidence 997 579999988653 689999999999997655543333 455555554 3 4799999999999999999887665
Q ss_pred h
Q 030225 155 E 155 (181)
Q Consensus 155 ~ 155 (181)
-
T Consensus 176 h 176 (625)
T KOG1707|consen 176 H 176 (625)
T ss_pred c
Confidence 4
No 254
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.60 E-value=1.3e-14 Score=117.14 Aligned_cols=141 Identities=21% Similarity=0.191 Sum_probs=86.8
Q ss_pred CCCchhHHHHHHhhCCCCCcc------------ccc-------------------eeeeEEEEEEEECCeEEEEEEEeCC
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQ------------EST-------------------IGAAFFTQVLSLNEVTIKFDIWDTA 49 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~------------~~t-------------------~~~~~~~~~~~~~~~~~~~~i~D~~ 49 (181)
+++|||||+++|+........ ..+ -|.++......+.....++.|+|||
T Consensus 33 ~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~~~~~~~liDtP 112 (632)
T PRK05506 33 VDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFATPKRKFIVADTP 112 (632)
T ss_pred CCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEccCCceEEEEECC
Confidence 689999999999864332110 000 1222222233344455678899999
Q ss_pred ChhhhhccchhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCH----HHHHHHHH
Q 030225 50 GQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKN----EEGELYAQ 125 (181)
Q Consensus 50 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~----~~~~~~~~ 125 (181)
|+..|.......+..+|++++|+|+.++.. ......+..+... ..+++++++||+|+.+..+... .+...+..
T Consensus 113 G~~~f~~~~~~~~~~aD~~llVvda~~g~~-~~t~e~~~~~~~~--~~~~iivvvNK~D~~~~~~~~~~~i~~~i~~~~~ 189 (632)
T PRK05506 113 GHEQYTRNMVTGASTADLAIILVDARKGVL-TQTRRHSFIASLL--GIRHVVLAVNKMDLVDYDQEVFDEIVADYRAFAA 189 (632)
T ss_pred ChHHHHHHHHHHHHhCCEEEEEEECCCCcc-ccCHHHHHHHHHh--CCCeEEEEEEecccccchhHHHHHHHHHHHHHHH
Confidence 998887665667889999999999975422 1122222233222 2357888999999864211111 22233344
Q ss_pred HcC---CeEEEEecCCCCCHHH
Q 030225 126 ENG---LSFLETSAKSAHNVNE 144 (181)
Q Consensus 126 ~~~---~~~~~~Sa~~~~gi~~ 144 (181)
..+ .+++++||++|+|+.+
T Consensus 190 ~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 190 KLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred HcCCCCccEEEEecccCCCccc
Confidence 445 4689999999999874
No 255
>PRK12740 elongation factor G; Reviewed
Probab=99.60 E-value=2.5e-14 Score=116.29 Aligned_cols=106 Identities=18% Similarity=0.144 Sum_probs=71.9
Q ss_pred CCCchhHHHHHHhhCCCCCccc----------------cceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccC
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQE----------------STIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 64 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~----------------~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 64 (181)
+|+|||||+++|+......... ..-|.++......+....+.+.+|||||+..+...+..++..
T Consensus 4 ~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~ 83 (668)
T PRK12740 4 SGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERALRV 83 (668)
T ss_pred CCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHHHHH
Confidence 5899999999996533211000 001223333333444456789999999998887777888999
Q ss_pred CcEEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCc
Q 030225 65 AAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLE 110 (181)
Q Consensus 65 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~ 110 (181)
+|++++|+|+++.........| ..+.. .+.|+++++||+|+.
T Consensus 84 aD~vllvvd~~~~~~~~~~~~~-~~~~~---~~~p~iiv~NK~D~~ 125 (668)
T PRK12740 84 LDGAVVVVCAVGGVEPQTETVW-RQAEK---YGVPRIIFVNKMDRA 125 (668)
T ss_pred hCeEEEEEeCCCCcCHHHHHHH-HHHHH---cCCCEEEEEECCCCC
Confidence 9999999999876554433333 33332 367999999999974
No 256
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.57 E-value=5.2e-14 Score=109.01 Aligned_cols=116 Identities=17% Similarity=0.183 Sum_probs=76.8
Q ss_pred eeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhH---H---HHHHHHHHHHHHhCCCCce
Q 030225 26 GAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDS---F---ERAKKWVQELQRQGNPNLI 99 (181)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~p 99 (181)
|.+.......+......+.|+|+||+.+|.......+..+|++++|+|++.+.- + ....+.+..+... ++|
T Consensus 70 GiTid~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~---gi~ 146 (446)
T PTZ00141 70 GITIDIALWKFETPKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTL---GVK 146 (446)
T ss_pred CEeEEeeeEEEccCCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHc---CCC
Confidence 344444455566677889999999999998888888899999999999986420 1 2333444444333 444
Q ss_pred -EEEEEeCCCCc--ccc----cCCHHHHHHHHHHcC-----CeEEEEecCCCCCHHH
Q 030225 100 -MFLVANKVDLE--EKR----KVKNEEGELYAQENG-----LSFLETSAKSAHNVNE 144 (181)
Q Consensus 100 -~ivi~nK~D~~--~~~----~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~ 144 (181)
+++++||+|.. +.. +....+...+....+ ++++.+|+.+|+|+.+
T Consensus 147 ~iiv~vNKmD~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 147 QMIVCINKMDDKTVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred eEEEEEEccccccchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 67899999942 211 111233334444333 5789999999999864
No 257
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.57 E-value=1.2e-14 Score=110.01 Aligned_cols=157 Identities=18% Similarity=0.149 Sum_probs=105.9
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhh-hc--------cchhhccCCcEEEEE
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERY-HS--------LAPMYYRGAAAAVVV 71 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-~~--------~~~~~~~~~d~~i~v 71 (181)
||||||||+|.|....... ..|..|+++...+..++-..+++.+.||+|-.+. .. .....+..+|++++|
T Consensus 277 PNvGKSSLlNaL~~~drsI-VSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~~~~advi~~v 355 (531)
T KOG1191|consen 277 PNVGKSSLLNALSREDRSI-VSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARKRIERADVILLV 355 (531)
T ss_pred CCCCHHHHHHHHhcCCceE-eCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHHHHhhcCEEEEE
Confidence 8999999999999887655 3477788888888777777788899999996541 11 123457889999999
Q ss_pred EEC--CChhHHHHHHHHHHHHHHh------CCCCceEEEEEeCCCCccc-ccCCHHHHHHHHHHcC---Ce-EEEEecCC
Q 030225 72 YDI--TSMDSFERAKKWVQELQRQ------GNPNLIMFLVANKVDLEEK-RKVKNEEGELYAQENG---LS-FLETSAKS 138 (181)
Q Consensus 72 ~d~--~~~~s~~~~~~~~~~~~~~------~~~~~p~ivi~nK~D~~~~-~~~~~~~~~~~~~~~~---~~-~~~~Sa~~ 138 (181)
+|+ ++-++-..+.+.+.....- .....|++++.||+|+... .+... ....+....+ .+ ..++|+++
T Consensus 356 vda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~-~~~~~~~~~~~~~~~i~~~vs~~t 434 (531)
T KOG1191|consen 356 VDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTK-IPVVYPSAEGRSVFPIVVEVSCTT 434 (531)
T ss_pred ecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccC-CceeccccccCcccceEEEeeech
Confidence 999 3333333333333332221 1234789999999998653 22211 1112222222 33 45699999
Q ss_pred CCCHHHHHHHHHHHHHhhCCC
Q 030225 139 AHNVNELFYEIAKRLAEVNPS 159 (181)
Q Consensus 139 ~~gi~~~~~~l~~~~~~~~~~ 159 (181)
++|++.+.+.|.+.+...-.+
T Consensus 435 keg~~~L~~all~~~~~~~~~ 455 (531)
T KOG1191|consen 435 KEGCERLSTALLNIVERLVVS 455 (531)
T ss_pred hhhHHHHHHHHHHHHHHhhcC
Confidence 999999999999988876553
No 258
>PLN03127 Elongation factor Tu; Provisional
Probab=99.56 E-value=9e-14 Score=107.57 Aligned_cols=147 Identities=14% Similarity=0.135 Sum_probs=91.1
Q ss_pred CCCchhHHHHHHhhC------CC----------CCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccC
Q 030225 1 MGTGKTSLVLRFVKG------QF----------FDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 64 (181)
Q Consensus 1 ~~~GKttLl~~l~~~------~~----------~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 64 (181)
+++|||||+++|.+. .. .++. .-|+++......++....++.++||||+..|.......+..
T Consensus 70 vd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~--~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f~~~~~~g~~~ 147 (447)
T PLN03127 70 VDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEK--ARGITIATAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQ 147 (447)
T ss_pred CCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHh--hcCceeeeeEEEEcCCCeEEEEEECCCccchHHHHHHHHhh
Confidence 479999999999732 10 0111 12444445555666666788999999998876665566678
Q ss_pred CcEEEEEEECCChhHHHHHHHHHHHHHHhCCCCce-EEEEEeCCCCcccccCCH---HHHHHHHHHc-----CCeEEEEe
Q 030225 65 AAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLI-MFLVANKVDLEEKRKVKN---EEGELYAQEN-----GLSFLETS 135 (181)
Q Consensus 65 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivi~nK~D~~~~~~~~~---~~~~~~~~~~-----~~~~~~~S 135 (181)
+|++++|+|+.++.. ......+..+... +.| +++++||+|+.+..+... .+...+.... .++++.+|
T Consensus 148 aD~allVVda~~g~~-~qt~e~l~~~~~~---gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~~~~~vpiip~S 223 (447)
T PLN03127 148 MDGGILVVSAPDGPM-PQTKEHILLARQV---GVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYKFPGDEIPIIRGS 223 (447)
T ss_pred CCEEEEEEECCCCCc-hhHHHHHHHHHHc---CCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCCCCCcceEEEec
Confidence 999999999876422 2223344444333 567 567899999864222111 1222333322 36788888
Q ss_pred cC---CCCC-------HHHHHHHHHHHH
Q 030225 136 AK---SAHN-------VNELFYEIAKRL 153 (181)
Q Consensus 136 a~---~~~g-------i~~~~~~l~~~~ 153 (181)
|. ++.| +.++++.|.+.+
T Consensus 224 a~sa~~g~n~~~~~~~i~~Ll~~l~~~l 251 (447)
T PLN03127 224 ALSALQGTNDEIGKNAILKLMDAVDEYI 251 (447)
T ss_pred cceeecCCCcccccchHHHHHHHHHHhC
Confidence 76 4555 677777776654
No 259
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.56 E-value=2.4e-14 Score=102.78 Aligned_cols=96 Identities=22% Similarity=0.339 Sum_probs=78.2
Q ss_pred hhhhccchhhccCCcEEEEEEECCChh-HHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCe
Q 030225 52 ERYHSLAPMYYRGAAAAVVVYDITSMD-SFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLS 130 (181)
Q Consensus 52 ~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~ 130 (181)
+++..+.+.+++++|++++|||++++. ++..+.+|+..+.. .++|+++++||+||.+..++..+....+ ...+.+
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~---~~i~~vIV~NK~DL~~~~~~~~~~~~~~-~~~g~~ 99 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA---QNIEPIIVLNKIDLLDDEDMEKEQLDIY-RNIGYQ 99 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECcccCCCHHHHHHHHHHH-HHCCCe
Confidence 557778888999999999999999887 89999999986643 4789999999999965444333344444 357899
Q ss_pred EEEEecCCCCCHHHHHHHHHH
Q 030225 131 FLETSAKSAHNVNELFYEIAK 151 (181)
Q Consensus 131 ~~~~Sa~~~~gi~~~~~~l~~ 151 (181)
++++||++++|++++|+.+..
T Consensus 100 v~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 100 VLMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred EEEEecCCchhHHHHHhhhcC
Confidence 999999999999999998864
No 260
>PRK12739 elongation factor G; Reviewed
Probab=99.55 E-value=1.1e-13 Score=112.74 Aligned_cols=106 Identities=17% Similarity=0.117 Sum_probs=71.0
Q ss_pred CCCchhHHHHHHhhCCCCCcc----c------------cceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccC
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQ----E------------STIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 64 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~----~------------~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 64 (181)
+++|||||+++|+........ . ..-|+++......+...+.++.++||||+..|...+...+..
T Consensus 17 ~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~f~~e~~~al~~ 96 (691)
T PRK12739 17 IDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVDFTIEVERSLRV 96 (691)
T ss_pred CCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHHHHHHHHHHHHH
Confidence 589999999999753211000 0 011233333333344456688999999999888888889999
Q ss_pred CcEEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCc
Q 030225 65 AAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLE 110 (181)
Q Consensus 65 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~ 110 (181)
+|++++|+|+.++-.... ...+..+.. .++|.++++||+|+.
T Consensus 97 ~D~~ilVvDa~~g~~~qt-~~i~~~~~~---~~~p~iv~iNK~D~~ 138 (691)
T PRK12739 97 LDGAVAVFDAVSGVEPQS-ETVWRQADK---YGVPRIVFVNKMDRI 138 (691)
T ss_pred hCeEEEEEeCCCCCCHHH-HHHHHHHHH---cCCCEEEEEECCCCC
Confidence 999999999987533222 233333333 357899999999975
No 261
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.53 E-value=3.6e-13 Score=93.87 Aligned_cols=153 Identities=14% Similarity=0.127 Sum_probs=89.8
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeE--EEEEEEECCeEEEEEEEeCCChhhhhc--------c---chhhccCCcE
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAF--FTQVLSLNEVTIKFDIWDTAGQERYHS--------L---APMYYRGAAA 67 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~---~~~~~~~~d~ 67 (181)
||||||||+|++++...........+.+. ........ ..++.++||||-..... + ......+.|+
T Consensus 9 ~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~--~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~~~g~~~ 86 (196)
T cd01852 9 TGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWD--GRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLSAPGPHA 86 (196)
T ss_pred CCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEEC--CeEEEEEECcCCCCccCChHHHHHHHHHHHHhcCCCCEE
Confidence 79999999999998765433211112222 22222333 34788999999533211 1 1122467899
Q ss_pred EEEEEECCChhHHHHHHHHHHHHHHhCC--CCceEEEEEeCCCCcccccC------CHHHHHHHHHHcCCeEEEEe----
Q 030225 68 AVVVYDITSMDSFERAKKWVQELQRQGN--PNLIMFLVANKVDLEEKRKV------KNEEGELYAQENGLSFLETS---- 135 (181)
Q Consensus 68 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivi~nK~D~~~~~~~------~~~~~~~~~~~~~~~~~~~S---- 135 (181)
+++|+++.+. +- .-...++.+..... .-.++++++|+.|......+ .........+..+-.++..+
T Consensus 87 illVi~~~~~-t~-~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~~~f~~~~~ 164 (196)
T cd01852 87 FLLVVPLGRF-TE-EEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRYVAFNNKAK 164 (196)
T ss_pred EEEEEECCCc-CH-HHHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeEEEEeCCCC
Confidence 9999998762 21 11223333333221 12478889999996432211 11334555555565565554
Q ss_pred -cCCCCCHHHHHHHHHHHHHhhC
Q 030225 136 -AKSAHNVNELFYEIAKRLAEVN 157 (181)
Q Consensus 136 -a~~~~gi~~~~~~l~~~~~~~~ 157 (181)
+..+.++.++++.+.+.+.++.
T Consensus 165 ~~~~~~q~~~Ll~~i~~~~~~~~ 187 (196)
T cd01852 165 GEEQEQQVKELLAKVESMVKENG 187 (196)
T ss_pred cchhHHHHHHHHHHHHHHHHhcC
Confidence 4567889999999999888743
No 262
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.52 E-value=1.5e-13 Score=111.93 Aligned_cols=107 Identities=17% Similarity=0.081 Sum_probs=73.9
Q ss_pred CCCchhHHHHHHhhCCCCCc----cc------------cceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccC
Q 030225 1 MGTGKTSLVLRFVKGQFFDF----QE------------STIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 64 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~----~~------------~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 64 (181)
+|+|||||+++|+....... .. ..-|+++......+...+.++.+|||||+..+...+...++.
T Consensus 19 ~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~l~~ 98 (689)
T TIGR00484 19 IDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVDFTVEVERSLRV 98 (689)
T ss_pred CCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcchhHHHHHHHHH
Confidence 68999999999975322110 00 012344444444455556789999999998888788889999
Q ss_pred CcEEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcc
Q 030225 65 AAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEE 111 (181)
Q Consensus 65 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~ 111 (181)
+|++++|+|+++....... .++..+.. .+.|.++++||+|+.+
T Consensus 99 ~D~~ilVvda~~g~~~~~~-~~~~~~~~---~~~p~ivviNK~D~~~ 141 (689)
T TIGR00484 99 LDGAVAVLDAVGGVQPQSE-TVWRQANR---YEVPRIAFVNKMDKTG 141 (689)
T ss_pred hCEEEEEEeCCCCCChhHH-HHHHHHHH---cCCCEEEEEECCCCCC
Confidence 9999999999875443322 33333333 3578999999999864
No 263
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.52 E-value=1.2e-14 Score=98.68 Aligned_cols=108 Identities=20% Similarity=0.296 Sum_probs=64.6
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEE-CCeEEEEEEEeCCChhhhhccc-hh--hccCCcEEEEEEECCC
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSL-NEVTIKFDIWDTAGQERYHSLA-PM--YYRGAAAAVVVYDITS 76 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~-~~--~~~~~d~~i~v~d~~~ 76 (181)
+|||||+|+.+|..+...+++.+. .... ...+ ....-.+.++|+|||.+.+... .. +..++.++|||+|.+.
T Consensus 12 s~SGKTaLf~~L~~~~~~~T~tS~-e~n~---~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~IIfvvDSs~ 87 (181)
T PF09439_consen 12 SGSGKTALFSQLVNGKTVPTVTSM-ENNI---AYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGIIFVVDSST 87 (181)
T ss_dssp TTSSHHHHHHHHHHSS---B---S-SEEE---ECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEEEEEEETTT
T ss_pred CCCCHHHHHHHHhcCCcCCeeccc-cCCc---eEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEEEEEEeCcc
Confidence 689999999999999765554333 2111 1112 1223367899999998766533 32 4788999999999874
Q ss_pred -hhHHHHHHHHHHHHHH---hCCCCceEEEEEeCCCCccc
Q 030225 77 -MDSFERAKKWVQELQR---QGNPNLIMFLVANKVDLEEK 112 (181)
Q Consensus 77 -~~s~~~~~~~~~~~~~---~~~~~~p~ivi~nK~D~~~~ 112 (181)
...+.++-.++-.+.. .....+|++|+.||.|+...
T Consensus 88 ~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A 127 (181)
T PF09439_consen 88 DQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTA 127 (181)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT-
T ss_pred chhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCcccccc
Confidence 3445554444444333 22468899999999998653
No 264
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.51 E-value=8.3e-13 Score=95.58 Aligned_cols=146 Identities=18% Similarity=0.117 Sum_probs=94.8
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhh-------ccchhhccCCcEEEEEEE
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYH-------SLAPMYYRGAAAAVVVYD 73 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~~~~~~~~~d~~i~v~d 73 (181)
|+|||||||++|.+.......-+.++.+...-. +++...++++.|+||--.-. ...-...++||++++|+|
T Consensus 72 PsvGKStLL~~LTnt~seva~y~FTTl~~VPG~--l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R~ADlIiiVld 149 (365)
T COG1163 72 PSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGM--LEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVARNADLIIIVLD 149 (365)
T ss_pred CCccHHHHHHHHhCCCccccccCceecccccce--EeecCceEEEEcCcccccCcccCCCCcceeeeeeccCCEEEEEEe
Confidence 899999999999986553322233333322333 34455678899999842211 123456789999999999
Q ss_pred CCChhH-HHHHHHHHHHH-----------------------------------------HHhC-----------------
Q 030225 74 ITSMDS-FERAKKWVQEL-----------------------------------------QRQG----------------- 94 (181)
Q Consensus 74 ~~~~~s-~~~~~~~~~~~-----------------------------------------~~~~----------------- 94 (181)
+....+ .+-+.+.+... .++.
T Consensus 150 ~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~Ir~dvTlDd~ 229 (365)
T COG1163 150 VFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLIREDVTLDDL 229 (365)
T ss_pred cCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEEEecCCcHHHH
Confidence 986544 44444433331 0000
Q ss_pred -------CCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHh
Q 030225 95 -------NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAE 155 (181)
Q Consensus 95 -------~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~ 155 (181)
---+|.+++.||.|+.. .++...+.+.. .++.+||..+.|++++.+.|-+.+.-
T Consensus 230 id~l~~nrvY~p~l~v~NKiD~~~-----~e~~~~l~~~~--~~v~isa~~~~nld~L~e~i~~~L~l 290 (365)
T COG1163 230 IDALEGNRVYKPALYVVNKIDLPG-----LEELERLARKP--NSVPISAKKGINLDELKERIWDVLGL 290 (365)
T ss_pred HHHHhhcceeeeeEEEEecccccC-----HHHHHHHHhcc--ceEEEecccCCCHHHHHHHHHHhhCe
Confidence 00389999999999854 33344443322 88999999999999999999886543
No 265
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.48 E-value=1.3e-12 Score=83.43 Aligned_cols=99 Identities=17% Similarity=0.109 Sum_probs=59.9
Q ss_pred CCCchhHHHHHHhhCCCCC-ccccceeeeEEEEEEEECCeEEEEEEEeCCChhh---------hhccchhhccCCcEEEE
Q 030225 1 MGTGKTSLVLRFVKGQFFD-FQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER---------YHSLAPMYYRGAAAAVV 70 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~---------~~~~~~~~~~~~d~~i~ 70 (181)
||+|||||+|+|++..... ...+..+.......+..++..+ .++|+||-.. ........+..+|++++
T Consensus 8 ~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~--~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~ii~ 85 (116)
T PF01926_consen 8 PNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKF--ILVDTPGINDGESQDNDGKEIRKFLEQISKSDLIIY 85 (116)
T ss_dssp TTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEE--EEEESSSCSSSSHHHHHHHHHHHHHHHHCTESEEEE
T ss_pred CCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeE--EEEeCCCCcccchhhHHHHHHHHHHHHHHHCCEEEE
Confidence 7999999999999854321 1112222222223444566554 6999999521 11112233488999999
Q ss_pred EEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeC
Q 030225 71 VYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANK 106 (181)
Q Consensus 71 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK 106 (181)
|+|++++.. +.....++.+. .++|+++|+||
T Consensus 86 vv~~~~~~~-~~~~~~~~~l~----~~~~~i~v~NK 116 (116)
T PF01926_consen 86 VVDASNPIT-EDDKNILRELK----NKKPIILVLNK 116 (116)
T ss_dssp EEETTSHSH-HHHHHHHHHHH----TTSEEEEEEES
T ss_pred EEECCCCCC-HHHHHHHHHHh----cCCCEEEEEcC
Confidence 999877322 22233334442 57899999998
No 266
>PRK00007 elongation factor G; Reviewed
Probab=99.48 E-value=9.3e-13 Score=107.31 Aligned_cols=106 Identities=16% Similarity=0.127 Sum_probs=70.1
Q ss_pred CCCchhHHHHHHhhCCCCCcc----c------------cceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccC
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQ----E------------STIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 64 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~----~------------~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 64 (181)
+|+|||||+++|+........ . ..-|+++......+.....++.++||||+..|.......+..
T Consensus 19 ~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~f~~ev~~al~~ 98 (693)
T PRK00007 19 IDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVDFTIEVERSLRV 98 (693)
T ss_pred CCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHHHHHHHHHHHHH
Confidence 689999999999742211000 0 112333434344444456689999999998887767777889
Q ss_pred CcEEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCc
Q 030225 65 AAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLE 110 (181)
Q Consensus 65 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~ 110 (181)
+|++++|+|+...-.... ...+..+.. .+.|.++++||+|+.
T Consensus 99 ~D~~vlVvda~~g~~~qt-~~~~~~~~~---~~~p~iv~vNK~D~~ 140 (693)
T PRK00007 99 LDGAVAVFDAVGGVEPQS-ETVWRQADK---YKVPRIAFVNKMDRT 140 (693)
T ss_pred cCEEEEEEECCCCcchhh-HHHHHHHHH---cCCCEEEEEECCCCC
Confidence 999999999886533222 233333433 357889999999974
No 267
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.48 E-value=9.1e-13 Score=100.45 Aligned_cols=57 Identities=19% Similarity=0.144 Sum_probs=38.9
Q ss_pred CceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHH-HHHHHHHHHHhhC
Q 030225 97 NLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNE-LFYEIAKRLAEVN 157 (181)
Q Consensus 97 ~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~-~~~~l~~~~~~~~ 157 (181)
.+|+++++||.|+..... ....+....+..++.+||..+.++.+ +++.+++.+....
T Consensus 217 ~KPvI~VlNK~D~~~~~~----~l~~i~~~~~~~vvpISA~~e~~l~~~l~~~i~~~lp~~p 274 (396)
T PRK09602 217 SKPMVIAANKADLPPAEE----NIERLKEEKYYIVVPTSAEAELALRRAAKAGLIDYIPGDS 274 (396)
T ss_pred CCCEEEEEEchhcccchH----HHHHHHhcCCCcEEEEcchhhhhHHHHHHHhHHhhCCCCC
Confidence 489999999999643111 12222222345689999999999999 7777777665543
No 268
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.47 E-value=3.2e-13 Score=101.84 Aligned_cols=149 Identities=17% Similarity=0.174 Sum_probs=103.6
Q ss_pred CchhHHHHHHhhCCCCCccc--------------cceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEE
Q 030225 3 TGKTSLVLRFVKGQFFDFQE--------------STIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA 68 (181)
Q Consensus 3 ~GKttLl~~l~~~~~~~~~~--------------~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 68 (181)
=|||||+..|+.+...-... .--|+++-.+...+.+..++++|+|||||..|-......++-.|++
T Consensus 16 HGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGEVERvl~MVDgv 95 (603)
T COG1217 16 HGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGEVERVLSMVDGV 95 (603)
T ss_pred CCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccchhhhhhhhcceE
Confidence 39999999999754421111 1236666677777777889999999999999999999999999999
Q ss_pred EEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccC-CHHHHHHHHHH-------cCCeEEEEecCCC-
Q 030225 69 VVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKV-KNEEGELYAQE-------NGLSFLETSAKSA- 139 (181)
Q Consensus 69 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~-~~~~~~~~~~~-------~~~~~~~~Sa~~~- 139 (181)
++++|+.+. .+...+-.++..... +.+.++++||+|..+.+.. ..++...+..+ +++|+++.|++.|
T Consensus 96 lLlVDA~EG-pMPQTrFVlkKAl~~---gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLdFPivYAS~~~G~ 171 (603)
T COG1217 96 LLLVDASEG-PMPQTRFVLKKALAL---GLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLDFPIVYASARNGT 171 (603)
T ss_pred EEEEEcccC-CCCchhhhHHHHHHc---CCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCCCcEEEeeccCce
Confidence 999999863 233334444444443 5567778899998664431 11222333222 4579999999887
Q ss_pred ---------CCHHHHHHHHHHHHHh
Q 030225 140 ---------HNVNELFYEIAKRLAE 155 (181)
Q Consensus 140 ---------~gi~~~~~~l~~~~~~ 155 (181)
.++.-+|+.|++.+..
T Consensus 172 a~~~~~~~~~~m~pLfe~I~~hvp~ 196 (603)
T COG1217 172 ASLDPEDEADDMAPLFETILDHVPA 196 (603)
T ss_pred eccCccccccchhHHHHHHHHhCCC
Confidence 3677888888776544
No 269
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.45 E-value=6.7e-13 Score=98.91 Aligned_cols=118 Identities=18% Similarity=0.166 Sum_probs=79.2
Q ss_pred eeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhH---H--H-HHHHHHHHHHHhCCCCce
Q 030225 26 GAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDS---F--E-RAKKWVQELQRQGNPNLI 99 (181)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~--~-~~~~~~~~~~~~~~~~~p 99 (181)
|.++......+....+.|.|+|+||+..|-...-.-+.+||+.|+|+|+.+.+. | . ..+......+.. .-..
T Consensus 70 GvTi~~~~~~fet~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tl--Gi~~ 147 (428)
T COG5256 70 GVTIDVAHSKFETDKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTL--GIKQ 147 (428)
T ss_pred ceEEEEEEEEeecCCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhc--CCce
Confidence 455555556666677789999999999988887778889999999999987631 1 1 122222222222 2335
Q ss_pred EEEEEeCCCCcccccCCHHH----HHHHHHHcC-----CeEEEEecCCCCCHHHH
Q 030225 100 MFLVANKVDLEEKRKVKNEE----GELYAQENG-----LSFLETSAKSAHNVNEL 145 (181)
Q Consensus 100 ~ivi~nK~D~~~~~~~~~~~----~~~~~~~~~-----~~~~~~Sa~~~~gi~~~ 145 (181)
.++++||+|+.+.++...++ ...+.+..| ++++.+|+..|+|+.+.
T Consensus 148 lIVavNKMD~v~wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~ 202 (428)
T COG5256 148 LIVAVNKMDLVSWDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKK 202 (428)
T ss_pred EEEEEEcccccccCHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCccccc
Confidence 77779999997644333333 233444444 56999999999987653
No 270
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=99.44 E-value=2.5e-12 Score=93.18 Aligned_cols=152 Identities=16% Similarity=0.256 Sum_probs=109.8
Q ss_pred CCchhHHHHHHhhCCCCCccccceeeeEEEEE--EEECCeEEEEEEEeCCChhhhhccchhhccCC----cEEEEEEECC
Q 030225 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQV--LSLNEVTIKFDIWDTAGQERYHSLAPMYYRGA----AAAVVVYDIT 75 (181)
Q Consensus 2 ~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~--~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~----d~~i~v~d~~ 75 (181)
|+|||||+.+|-+.. +..+.-|..|.... -...+...++.+|-..|......+.+..+... .++|++.|.+
T Consensus 62 ~sGKtsLi~klqg~e---~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~aetlviltasms 138 (473)
T KOG3905|consen 62 GSGKTSLISKLQGSE---TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAETLVILTASMS 138 (473)
T ss_pred CCchhHHHHHhhccc---ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccceEEEEEEecC
Confidence 799999999998766 23344444443333 33445567889999988776666655555433 4889999999
Q ss_pred ChhH-HHHHHHHHHHHHHhCC-----------------------------------------------------------
Q 030225 76 SMDS-FERAKKWVQELQRQGN----------------------------------------------------------- 95 (181)
Q Consensus 76 ~~~s-~~~~~~~~~~~~~~~~----------------------------------------------------------- 95 (181)
++.. ++.+++|...+.++..
T Consensus 139 ~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~llPL~~dtLt 218 (473)
T KOG3905|consen 139 NPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEHVLLPLGQDTLT 218 (473)
T ss_pred CcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCccccccccccCCcchh
Confidence 9955 6668888877655410
Q ss_pred --CCceEEEEEeCCCCcc----cc-------cCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHhh
Q 030225 96 --PNLIMFLVANKVDLEE----KR-------KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEV 156 (181)
Q Consensus 96 --~~~p~ivi~nK~D~~~----~~-------~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~ 156 (181)
-++|+++|.+|+|... .. .......+.||..+|..++++|++...|++-+..+|++..+..
T Consensus 219 ~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivhr~yG~ 292 (473)
T KOG3905|consen 219 HNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVHRSYGF 292 (473)
T ss_pred hcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHHHhcCc
Confidence 0589999999999732 11 1222346678888999999999999999999999999988764
No 271
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.44 E-value=2.6e-12 Score=87.76 Aligned_cols=146 Identities=19% Similarity=0.252 Sum_probs=88.6
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhcc---CCcEEEEEEECCC-
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYR---GAAAAVVVYDITS- 76 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~---~~d~~i~v~d~~~- 76 (181)
++||||+|+-+|..+....++.+ .......+..+.-.+.++|.|||.+.+.-...++. .+-+++||+|..-
T Consensus 47 ~dSGKT~LF~qL~~gs~~~TvtS-----iepn~a~~r~gs~~~~LVD~PGH~rlR~kl~e~~~~~~~akaiVFVVDSa~f 121 (238)
T KOG0090|consen 47 SDSGKTSLFTQLITGSHRGTVTS-----IEPNEATYRLGSENVTLVDLPGHSRLRRKLLEYLKHNYSAKAIVFVVDSATF 121 (238)
T ss_pred CCCCceeeeeehhcCCccCeeee-----eccceeeEeecCcceEEEeCCCcHHHHHHHHHHccccccceeEEEEEecccc
Confidence 58999999999998865443311 11222222222223679999999877665555555 7899999999763
Q ss_pred hhHHHHHHHHHHH-HHHh--CCCCceEEEEEeCCCCccccc------CCHHHHHH-------------------------
Q 030225 77 MDSFERAKKWVQE-LQRQ--GNPNLIMFLVANKVDLEEKRK------VKNEEGEL------------------------- 122 (181)
Q Consensus 77 ~~s~~~~~~~~~~-~~~~--~~~~~p~ivi~nK~D~~~~~~------~~~~~~~~------------------------- 122 (181)
.....++-.++-. +... ....+|++++.||.|+..... ..+.+...
T Consensus 122 ~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~~~~~tlg~~ 201 (238)
T KOG0090|consen 122 LKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDIAKDFTLGKE 201 (238)
T ss_pred chhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhcccccccccccccccc
Confidence 2223333333333 3333 246788999999999843211 11111111
Q ss_pred -----HH--HHcCCeEEEEecCCCCCHHHHHHHHHHH
Q 030225 123 -----YA--QENGLSFLETSAKSAHNVNELFYEIAKR 152 (181)
Q Consensus 123 -----~~--~~~~~~~~~~Sa~~~~gi~~~~~~l~~~ 152 (181)
|. .+..+.+.++|++++ +++++-+|+.+.
T Consensus 202 g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~ 237 (238)
T KOG0090|consen 202 GEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREA 237 (238)
T ss_pred ccccchhhcccceeEEeecccCcC-ChHHHHHHHHHh
Confidence 00 012346788899988 899999999764
No 272
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.42 E-value=7.2e-13 Score=94.01 Aligned_cols=152 Identities=16% Similarity=0.230 Sum_probs=96.5
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEE-EECCeEEEEEEEeCCChh-------hhhccchhhccCCcEEEEEE
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVL-SLNEVTIKFDIWDTAGQE-------RYHSLAPMYYRGAAAAVVVY 72 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~~~~i~D~~G~~-------~~~~~~~~~~~~~d~~i~v~ 72 (181)
.|+|||||+|+|+.+...+...-..+.+...+.. .+++. .+.+||+||-. +++.....++...|+++++.
T Consensus 48 TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~--~l~lwDtPG~gdg~~~D~~~r~~~~d~l~~~DLvL~l~ 125 (296)
T COG3596 48 TGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGE--NLVLWDTPGLGDGKDKDAEHRQLYRDYLPKLDLVLWLI 125 (296)
T ss_pred CCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhcccc--ceEEecCCCcccchhhhHHHHHHHHHHhhhccEEEEec
Confidence 4899999999999766654433233333222222 22332 57899999953 36677788899999999999
Q ss_pred ECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccc-------ccCCHHHHHHHHHH--------c--CCeEEEEe
Q 030225 73 DITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEK-------RKVKNEEGELYAQE--------N--GLSFLETS 135 (181)
Q Consensus 73 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~-------~~~~~~~~~~~~~~--------~--~~~~~~~S 135 (181)
+..|+.--.. ..+++.+.... .+.++++++|.+|.... ...+.....++..+ . --|++.++
T Consensus 126 ~~~draL~~d-~~f~~dVi~~~-~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~~q~V~pV~~~~ 203 (296)
T COG3596 126 KADDRALGTD-EDFLRDVIILG-LDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRLFQEVKPVVAVS 203 (296)
T ss_pred cCCCccccCC-HHHHHHHHHhc-cCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHhhcCCeEEec
Confidence 9987642111 23334443432 34789999999997431 01111111111111 1 13778888
Q ss_pred cCCCCCHHHHHHHHHHHHHhh
Q 030225 136 AKSAHNVNELFYEIAKRLAEV 156 (181)
Q Consensus 136 a~~~~gi~~~~~~l~~~~~~~ 156 (181)
.+.+-|++++...++..+...
T Consensus 204 ~r~~wgl~~l~~ali~~lp~e 224 (296)
T COG3596 204 GRLPWGLKELVRALITALPVE 224 (296)
T ss_pred cccCccHHHHHHHHHHhCccc
Confidence 899999999999999987643
No 273
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=99.41 E-value=8e-12 Score=96.70 Aligned_cols=155 Identities=20% Similarity=0.282 Sum_probs=109.7
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEEC--CeEEEEEEEeCCChhhhhccchhhccC----CcEEEEEEEC
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLN--EVTIKFDIWDTAGQERYHSLAPMYYRG----AAAAVVVYDI 74 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~----~d~~i~v~d~ 74 (181)
.++||||||.+|.+.. ...++.+.+|....+..+ +...++.+|-..|...+..+.+..+.. --++|+|.|.
T Consensus 34 ~~~GKttli~~L~~~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~~t~vvIvlDl 110 (472)
T PF05783_consen 34 KGSGKTTLIARLQGIE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLPNTLVVIVLDL 110 (472)
T ss_pred CCCchHHHHHHhhccC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccccceEEEEEecC
Confidence 4799999999987643 345677766655544332 234678999998877777766655543 2488999999
Q ss_pred CChhH-HHHHHHHHHHHHHhC-----------------------------------------------------------
Q 030225 75 TSMDS-FERAKKWVQELQRQG----------------------------------------------------------- 94 (181)
Q Consensus 75 ~~~~s-~~~~~~~~~~~~~~~----------------------------------------------------------- 94 (181)
+.|.. ++.++.|+..+.++.
T Consensus 111 S~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~~~~lpl~~g~ 190 (472)
T PF05783_consen 111 SKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDDESVLLPLGEGV 190 (472)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCcccccccccccccccccCCCCCcc
Confidence 99876 445677765543320
Q ss_pred ---CCCceEEEEEeCCCCccc----c-------cCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHhhCC
Q 030225 95 ---NPNLIMFLVANKVDLEEK----R-------KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVNP 158 (181)
Q Consensus 95 ---~~~~p~ivi~nK~D~~~~----~-------~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~~ 158 (181)
..++|++||.+|+|.... . +....-.+.+|..+|+.++++|++...+++.++.+|.+.+....-
T Consensus 191 l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi~h~l~~~~f 268 (472)
T PF05783_consen 191 LTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYILHRLYGFPF 268 (472)
T ss_pred cccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHHHHHhccCCC
Confidence 003799999999997421 1 122233567888899999999999999999999999998877543
No 274
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.40 E-value=8.8e-12 Score=92.83 Aligned_cols=122 Identities=17% Similarity=0.223 Sum_probs=92.0
Q ss_pred ECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCCh----------hHHHHHHHHHHHHHHhC-CCCceEEEEE
Q 030225 36 LNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSM----------DSFERAKKWVQELQRQG-NPNLIMFLVA 104 (181)
Q Consensus 36 ~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~-~~~~p~ivi~ 104 (181)
+....+.+.+||++|+...+..|..++.+++++|||+|+++- ..+.+....+..+.... ..++|+++++
T Consensus 156 f~~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~ 235 (317)
T cd00066 156 FTIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFL 235 (317)
T ss_pred EEecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEc
Confidence 344567889999999999999999999999999999999974 45666666666665542 2679999999
Q ss_pred eCCCCcc----------------cccCCHHHHHHHHHH----------cCCeEEEEecCCCCCHHHHHHHHHHHHHhhC
Q 030225 105 NKVDLEE----------------KRKVKNEEGELYAQE----------NGLSFLETSAKSAHNVNELFYEIAKRLAEVN 157 (181)
Q Consensus 105 nK~D~~~----------------~~~~~~~~~~~~~~~----------~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~ 157 (181)
||.|+-. ......+.+..|... +.+..+.++|.+..+++.+|+.+.+.+.+..
T Consensus 236 NK~D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~~ 314 (317)
T cd00066 236 NKKDLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQNN 314 (317)
T ss_pred cChHHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHHHH
Confidence 9999622 112344555554443 2245678899999999999999999887754
No 275
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.40 E-value=1.4e-12 Score=81.70 Aligned_cols=129 Identities=23% Similarity=0.192 Sum_probs=88.2
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhcc----chhhccCCcEEEEEEECCC
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSL----APMYYRGAAAAVVVYDITS 76 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~----~~~~~~~~d~~i~v~d~~~ 76 (181)
.|+|||||.++|.+... .+..|..+++ +.. ..+|+||.--.+.. ......++|++++|-.+++
T Consensus 10 ~gcGKTtL~q~L~G~~~--lykKTQAve~-------~d~----~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~and 76 (148)
T COG4917 10 VGCGKTTLFQSLYGNDT--LYKKTQAVEF-------NDK----GDIDTPGEYFEHPRWYHALITTLQDADVIIYVHAAND 76 (148)
T ss_pred cccCchhHHHHhhcchh--hhcccceeec-------cCc----cccCCchhhhhhhHHHHHHHHHhhccceeeeeecccC
Confidence 48999999999987654 3334444322 111 16899995322222 2334678999999999999
Q ss_pred hhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCC-eEEEEecCCCCCHHHHHHHHHH
Q 030225 77 MDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGL-SFLETSAKSAHNVNELFYEIAK 151 (181)
Q Consensus 77 ~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~~~~~l~~ 151 (181)
+++.- -..+... ..+|+|-+++|.|+.+..+ .....++..+-|. ++|++|+.++.|++++++.|..
T Consensus 77 ~~s~f-----~p~f~~~--~~k~vIgvVTK~DLaed~d--I~~~~~~L~eaGa~~IF~~s~~d~~gv~~l~~~L~~ 143 (148)
T COG4917 77 PESRF-----PPGFLDI--GVKKVIGVVTKADLAEDAD--ISLVKRWLREAGAEPIFETSAVDNQGVEELVDYLAS 143 (148)
T ss_pred ccccC-----Ccccccc--cccceEEEEecccccchHh--HHHHHHHHHHcCCcceEEEeccCcccHHHHHHHHHh
Confidence 86521 1112222 3456888899999975333 3456778888885 6999999999999999999865
No 276
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.39 E-value=8.9e-12 Score=96.30 Aligned_cols=152 Identities=19% Similarity=0.234 Sum_probs=114.9
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
.++|||.|++.+++..+...+..+....+....+...+....+.+-|++-. ....+...- ..||+++++||.+++.+|
T Consensus 434 k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv~~~~YDsS~p~sf 511 (625)
T KOG1707|consen 434 KNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDVACLVYDSSNPRSF 511 (625)
T ss_pred CcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeeeEEEecccCCchHH
Confidence 479999999999999888877677777676676666677777788888754 223332222 779999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCe-EEEEecCCCCCHHHHHHHHHHHHHhhC
Q 030225 81 ERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLS-FLETSAKSAHNVNELFYEIAKRLAEVN 157 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~~~~~~l~~~~~~~~ 157 (181)
..+...++.-... ...|.++|++|+|+.+..+....+-.+++++++++ .+.+|.+..-. .++|..|+..+.-=+
T Consensus 512 ~~~a~v~~~~~~~--~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~P~~~S~~~~~s-~~lf~kL~~~A~~Ph 586 (625)
T KOG1707|consen 512 EYLAEVYNKYFDL--YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPPPIHISSKTLSS-NELFIKLATMAQYPH 586 (625)
T ss_pred HHHHHHHHHhhhc--cCCceEEEeeccccchhhhccCCChHHHHHhcCCCCCeeeccCCCCC-chHHHHHHHhhhCCC
Confidence 9887776665444 68999999999999776654444558899999975 56777775333 899999988665443
No 277
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.38 E-value=2.3e-12 Score=98.00 Aligned_cols=154 Identities=15% Similarity=0.123 Sum_probs=107.6
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhh-----hhcc----chhhccCCcEEEEE
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER-----YHSL----APMYYRGAAAAVVV 71 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-----~~~~----~~~~~~~~d~~i~v 71 (181)
||||||||++.+........ |...++.......++....+++++||||--. ...+ ..+...=-.+++|+
T Consensus 177 PNVGKSSf~~~vtradvevq--pYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IEmqsITALAHLraaVLYf 254 (620)
T KOG1490|consen 177 PNVGKSSFNNKVTRADDEVQ--PYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITALAHLRSAVLYF 254 (620)
T ss_pred CCCCcHhhcccccccccccC--CcccccchhhhhhhhhheeeeeecCCccccCcchhhhhHHHHHHHHHHHHhhhhheee
Confidence 89999999998887665433 3333333344445677778999999999311 1110 01111113567888
Q ss_pred EECCC--hhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHH---HHHHHcCCeEEEEecCCCCCHHHHH
Q 030225 72 YDITS--MDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGE---LYAQENGLSFLETSAKSAHNVNELF 146 (181)
Q Consensus 72 ~d~~~--~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~---~~~~~~~~~~~~~Sa~~~~gi~~~~ 146 (181)
.|++. +.|..+...++..+.... .++|.++++||+|+....+++++... .....-++++++.|+.+.+|+.++.
T Consensus 255 mDLSe~CGySva~QvkLfhsIKpLF-aNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~tS~~~eegVm~Vr 333 (620)
T KOG1490|consen 255 MDLSEMCGYSVAAQVKLYHSIKPLF-ANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQTSCVQEEGVMDVR 333 (620)
T ss_pred eechhhhCCCHHHHHHHHHHhHHHh-cCCceEEEeecccccCccccCHHHHHHHHHHHhccCceEEEecccchhceeeHH
Confidence 89885 467788788888887764 57899999999999876666665432 3333345899999999999999999
Q ss_pred HHHHHHHHhhC
Q 030225 147 YEIAKRLAEVN 157 (181)
Q Consensus 147 ~~l~~~~~~~~ 157 (181)
...++.+....
T Consensus 334 t~ACe~LLa~R 344 (620)
T KOG1490|consen 334 TTACEALLAAR 344 (620)
T ss_pred HHHHHHHHHHH
Confidence 98888777653
No 278
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.38 E-value=2.2e-11 Score=91.45 Aligned_cols=119 Identities=15% Similarity=0.225 Sum_probs=88.9
Q ss_pred eEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCCh----------hHHHHHHHHHHHHHHh-CCCCceEEEEEeCC
Q 030225 39 VTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSM----------DSFERAKKWVQELQRQ-GNPNLIMFLVANKV 107 (181)
Q Consensus 39 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~-~~~~~p~ivi~nK~ 107 (181)
..+.+.+||++|+...+..|..++.+++++|||+|+++- ..+.+....+..+... ...++|+++++||.
T Consensus 182 ~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~ 261 (342)
T smart00275 182 KKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKI 261 (342)
T ss_pred CCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecH
Confidence 446678999999999999999999999999999999973 4566666666666553 23678999999999
Q ss_pred CCccc---------------ccCCHHHHHHHHHH-----------cCCeEEEEecCCCCCHHHHHHHHHHHHHhhC
Q 030225 108 DLEEK---------------RKVKNEEGELYAQE-----------NGLSFLETSAKSAHNVNELFYEIAKRLAEVN 157 (181)
Q Consensus 108 D~~~~---------------~~~~~~~~~~~~~~-----------~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~ 157 (181)
|+-.. .....+.+..|... ..+..+.++|.+..++..+|+.+.+.+.+..
T Consensus 262 D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~~~ 337 (342)
T smart00275 262 DLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQRN 337 (342)
T ss_pred HhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHHHH
Confidence 97321 01233444444333 1245578889999999999999988887754
No 279
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.38 E-value=6e-12 Score=94.41 Aligned_cols=102 Identities=21% Similarity=0.222 Sum_probs=72.9
Q ss_pred CCCchhHHHHHHhhCCCC----------------------CccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccc
Q 030225 1 MGTGKTSLVLRFVKGQFF----------------------DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLA 58 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~----------------------~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~ 58 (181)
|.+|||||-.+|+--... .+... |+.+.+..+.+++....+++.|||||+.|..-+
T Consensus 21 PDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqR--GISVtsSVMqF~Y~~~~iNLLDTPGHeDFSEDT 98 (528)
T COG4108 21 PDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQR--GISVTSSVMQFDYADCLVNLLDTPGHEDFSEDT 98 (528)
T ss_pred CCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhc--CceEEeeEEEeccCCeEEeccCCCCccccchhH
Confidence 789999999998731110 01112 445555566667777789999999999998887
Q ss_pred hhhccCCcEEEEEEECCChhHHHH-HHHHHHHHHHhCCCCceEEEEEeCCCC
Q 030225 59 PMYYRGAAAAVVVYDITSMDSFER-AKKWVQELQRQGNPNLIMFLVANKVDL 109 (181)
Q Consensus 59 ~~~~~~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~p~ivi~nK~D~ 109 (181)
...+..+|..+.|+|+.-+ .+. ..++++.. +. .+.|++-++||.|.
T Consensus 99 YRtLtAvDsAvMVIDaAKG--iE~qT~KLfeVc-rl--R~iPI~TFiNKlDR 145 (528)
T COG4108 99 YRTLTAVDSAVMVIDAAKG--IEPQTLKLFEVC-RL--RDIPIFTFINKLDR 145 (528)
T ss_pred HHHHHhhheeeEEEecccC--ccHHHHHHHHHH-hh--cCCceEEEeecccc
Confidence 8888899999999998743 332 23333333 32 58999999999995
No 280
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.35 E-value=2.3e-12 Score=105.36 Aligned_cols=106 Identities=23% Similarity=0.211 Sum_probs=71.3
Q ss_pred CCCchhHHHHHHhhCC---------------CCCc---cccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhc
Q 030225 1 MGTGKTSLVLRFVKGQ---------------FFDF---QESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYY 62 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~---------------~~~~---~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~ 62 (181)
.++|||||+++|+... +.+. +..|+........+.+++..+++.+|||||+..|.......+
T Consensus 28 ~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~~f~~~~~~al 107 (720)
T TIGR00490 28 IDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHVDFGGDVTRAM 107 (720)
T ss_pred CCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCccccHHHHHHHH
Confidence 4899999999997531 1111 111333333333444677788999999999998887778889
Q ss_pred cCCcEEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCc
Q 030225 63 RGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLE 110 (181)
Q Consensus 63 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~ 110 (181)
+.+|++++|+|+.+.-..+. ...+..... .+.|.++++||+|..
T Consensus 108 ~~aD~~llVvda~~g~~~~t-~~~~~~~~~---~~~p~ivviNKiD~~ 151 (720)
T TIGR00490 108 RAVDGAIVVVCAVEGVMPQT-ETVLRQALK---ENVKPVLFINKVDRL 151 (720)
T ss_pred HhcCEEEEEEecCCCCCccH-HHHHHHHHH---cCCCEEEEEEChhcc
Confidence 99999999999986432222 122222222 356778999999975
No 281
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.35 E-value=1.2e-11 Score=79.61 Aligned_cols=106 Identities=31% Similarity=0.395 Sum_probs=75.0
Q ss_pred CCCchhHHHHHHhhCCCCCccc-cceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQE-STIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDS 79 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s 79 (181)
.|+|||+|+.++....+...+. ++++ +......+.+.++.+++||+.++..+
T Consensus 9 ~gvGKt~l~~~~~~~~~~~~~~~~t~~---------------------------~~~~~~~~~~s~~~~~~v~~~~~~~s 61 (124)
T smart00010 9 SGVGKVGKSARFVQFPFDYVPTVFTIG---------------------------IDVYDPTSYESFDVVLQCWRVDDRDS 61 (124)
T ss_pred CChhHHHHHHHHhcCCccccCceehhh---------------------------hhhccccccCCCCEEEEEEEccCHHH
Confidence 4899999999998777754333 3333 23333456778899999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHH
Q 030225 80 FERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVN 143 (181)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 143 (181)
++.+ |...+......+.|.++++||.|+.+..+....+. ..++++|+++++|+.
T Consensus 62 ~~~~--~~~~i~~~~k~dl~~~~~~nk~dl~~~~~~~~~~~--------~~~~~~s~~~~~~~~ 115 (124)
T smart00010 62 ADNK--NVPEVLVGNKSDLPILVGGNRDVLEEERQVATEEG--------LEFAETSAKTPEEGE 115 (124)
T ss_pred HHHH--hHHHHHhcCCCCCcEEEEeechhhHhhCcCCHHHH--------HHHHHHhCCCcchhh
Confidence 8766 77777665456788999999999854333333332 234567889999884
No 282
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.34 E-value=1.8e-11 Score=85.30 Aligned_cols=102 Identities=20% Similarity=0.211 Sum_probs=64.2
Q ss_pred EEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHH
Q 030225 41 IKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEG 120 (181)
Q Consensus 41 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~ 120 (181)
....++++.|..-.....+ .+ +|.+|.|+|+.+.++... .+..++ ...-++++||+|+.+......+..
T Consensus 92 ~D~iiIEt~G~~l~~~~~~-~l--~~~~i~vvD~~~~~~~~~--~~~~qi------~~ad~~~~~k~d~~~~~~~~~~~~ 160 (199)
T TIGR00101 92 LEMVFIESGGDNLSATFSP-EL--ADLTIFVIDVAAGDKIPR--KGGPGI------TRSDLLVINKIDLAPMVGADLGVM 160 (199)
T ss_pred CCEEEEECCCCCcccccch-hh--hCcEEEEEEcchhhhhhh--hhHhHh------hhccEEEEEhhhccccccccHHHH
Confidence 4556778888422122222 12 578999999987665321 111111 122488899999975323333444
Q ss_pred HHHHHH--cCCeEEEEecCCCCCHHHHHHHHHHHH
Q 030225 121 ELYAQE--NGLSFLETSAKSAHNVNELFYEIAKRL 153 (181)
Q Consensus 121 ~~~~~~--~~~~~~~~Sa~~~~gi~~~~~~l~~~~ 153 (181)
.+.++. .+.+++++||++|+|++++|++|.+.+
T Consensus 161 ~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~ 195 (199)
T TIGR00101 161 ERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYA 195 (199)
T ss_pred HHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 444444 347899999999999999999998654
No 283
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.34 E-value=1.7e-11 Score=89.74 Aligned_cols=115 Identities=23% Similarity=0.195 Sum_probs=75.7
Q ss_pred eeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEe
Q 030225 26 GAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVAN 105 (181)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~n 105 (181)
|+++.....-+.-.+-+|.+-|||||+.|..+.-.-...||+.|+++|+. ..-.+..++.- .+... ..-..+++..|
T Consensus 71 GITIDVAYRyFsT~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR-~Gvl~QTrRHs-~I~sL-LGIrhvvvAVN 147 (431)
T COG2895 71 GITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDAR-KGVLEQTRRHS-FIASL-LGIRHVVVAVN 147 (431)
T ss_pred CceEEEEeeecccccceEEEecCCcHHHHhhhhhcccccccEEEEEEecc-hhhHHHhHHHH-HHHHH-hCCcEEEEEEe
Confidence 44444443334445557899999999999988777778899999999985 23333333332 22222 12345777799
Q ss_pred CCCCcccccCCHHH----HHHHHHHcCC---eEEEEecCCCCCHH
Q 030225 106 KVDLEEKRKVKNEE----GELYAQENGL---SFLETSAKSAHNVN 143 (181)
Q Consensus 106 K~D~~~~~~~~~~~----~~~~~~~~~~---~~~~~Sa~~~~gi~ 143 (181)
|+||.+..+-..++ -..|+.+.++ .++++||+.|+|+-
T Consensus 148 KmDLvdy~e~~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~ 192 (431)
T COG2895 148 KMDLVDYSEEVFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVV 192 (431)
T ss_pred eecccccCHHHHHHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence 99998755433333 3346777764 68999999999864
No 284
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.27 E-value=3.3e-11 Score=84.68 Aligned_cols=101 Identities=19% Similarity=0.179 Sum_probs=60.4
Q ss_pred EEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHH
Q 030225 41 IKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEG 120 (181)
Q Consensus 41 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~ 120 (181)
..+.++++.|.-.... .+.-..+..+.|+|+.+.+... ... ... ...|.++++||+|+.+.......+.
T Consensus 103 ~d~IiIEt~G~l~~~~---~~~~~~~~~i~Vvd~~~~d~~~--~~~-~~~-----~~~a~iiv~NK~Dl~~~~~~~~~~~ 171 (207)
T TIGR00073 103 IDLLFIENVGNLVCPA---DFDLGEHMRVVLLSVTEGDDKP--LKY-PGM-----FKEADLIVINKADLAEAVGFDVEKM 171 (207)
T ss_pred CCEEEEecCCCcCCCc---ccccccCeEEEEEecCcccchh--hhh-HhH-----HhhCCEEEEEHHHccccchhhHHHH
Confidence 3566777777211111 1112345556777877543211 111 111 2456899999999965333223344
Q ss_pred HHHHHHcC--CeEEEEecCCCCCHHHHHHHHHHH
Q 030225 121 ELYAQENG--LSFLETSAKSAHNVNELFYEIAKR 152 (181)
Q Consensus 121 ~~~~~~~~--~~~~~~Sa~~~~gi~~~~~~l~~~ 152 (181)
....+..+ .+++++||++++|++++++++.+.
T Consensus 172 ~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~ 205 (207)
T TIGR00073 172 KADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ 205 (207)
T ss_pred HHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 44444443 789999999999999999999774
No 285
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.27 E-value=6e-11 Score=94.11 Aligned_cols=152 Identities=20% Similarity=0.165 Sum_probs=98.1
Q ss_pred CCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECC----------------eEEEEEEEeCCChhhhhccchhhccCC
Q 030225 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNE----------------VTIKFDIWDTAGQERYHSLAPMYYRGA 65 (181)
Q Consensus 2 ~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~----------------~~~~~~i~D~~G~~~~~~~~~~~~~~~ 65 (181)
.+|||-|+..+.+.++....-.+++..+....++..+ ..--+.++||||++.|..+......-|
T Consensus 485 DTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsFtnlRsrgsslC 564 (1064)
T KOG1144|consen 485 DTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESFTNLRSRGSSLC 564 (1064)
T ss_pred cccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhhhhhhhcccccc
Confidence 3799999999988665443334443333333333321 112468999999999999999999999
Q ss_pred cEEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccc-----------------CC-------HHHHH
Q 030225 66 AAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRK-----------------VK-------NEEGE 121 (181)
Q Consensus 66 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~-----------------~~-------~~~~~ 121 (181)
|++|+|+|+..+-.-..+. -++.++. .+.|++|++||+|..-.+. +. .....
T Consensus 565 ~~aIlvvdImhGlepqtiE-Si~lLR~---rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~v~~EF~~R~~~ii~ 640 (1064)
T KOG1144|consen 565 DLAILVVDIMHGLEPQTIE-SINLLRM---RKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKDVQNEFKERLNNIIV 640 (1064)
T ss_pred ceEEEEeehhccCCcchhH-HHHHHHh---cCCCeEEeehhhhhhcccccCCCchHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 9999999998632111111 1233332 5789999999999632111 00 00011
Q ss_pred HHHHHcC---------------CeEEEEecCCCCCHHHHHHHHHHHHHhhCC
Q 030225 122 LYAQENG---------------LSFLETSAKSAHNVNELFYEIAKRLAEVNP 158 (181)
Q Consensus 122 ~~~~~~~---------------~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~~ 158 (181)
+|+. .| +.++++||.+|+||.+++-+|++..+....
T Consensus 641 efaE-QgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m~ 691 (1064)
T KOG1144|consen 641 EFAE-QGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTMV 691 (1064)
T ss_pred HHHH-cccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHHHH
Confidence 1111 11 256899999999999999999997776543
No 286
>PTZ00258 GTP-binding protein; Provisional
Probab=99.25 E-value=1.2e-10 Score=88.34 Aligned_cols=75 Identities=17% Similarity=0.047 Sum_probs=45.1
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCe---------------EEEEEEEeCCChhhh----hccc---
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEV---------------TIKFDIWDTAGQERY----HSLA--- 58 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~~----~~~~--- 58 (181)
||||||||+|+|.+........|..+.+...-.+.+.+. ..++.++|+||-..- ..+.
T Consensus 30 PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ga~~g~gLg~~f 109 (390)
T PTZ00258 30 PNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKGASEGEGLGNAF 109 (390)
T ss_pred CCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcCCcchhHHHHHH
Confidence 899999999999876543322233222222222222221 345899999995321 1122
Q ss_pred hhhccCCcEEEEEEECC
Q 030225 59 PMYYRGAAAAVVVYDIT 75 (181)
Q Consensus 59 ~~~~~~~d~~i~v~d~~ 75 (181)
...++++|++++|+|+.
T Consensus 110 L~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 110 LSHIRAVDGIYHVVRAF 126 (390)
T ss_pred HHHHHHCCEEEEEEeCC
Confidence 22367899999999974
No 287
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.23 E-value=4.4e-12 Score=90.61 Aligned_cols=112 Identities=22% Similarity=0.194 Sum_probs=58.7
Q ss_pred EEEEEeCCChhhhhccchhhc--------cCCcEEEEEEECCChhH-HHHHHHHHHHHHHhCCCCceEEEEEeCCCCccc
Q 030225 42 KFDIWDTAGQERYHSLAPMYY--------RGAAAAVVVYDITSMDS-FERAKKWVQELQRQGNPNLIMFLVANKVDLEEK 112 (181)
Q Consensus 42 ~~~i~D~~G~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~ 112 (181)
.+.++|||||.++...+...- ...-++++++|+....+ ...+-.++..+......+.|.+.++||+|+...
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~ 171 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSK 171 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-H
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccc
Confidence 678999999987766554433 34568889999764322 111222222222211247899999999999652
Q ss_pred c--c--------------------CCHHHHHHHHHHcC-C-eEEEEecCCCCCHHHHHHHHHHHH
Q 030225 113 R--K--------------------VKNEEGELYAQENG-L-SFLETSAKSAHNVNELFYEIAKRL 153 (181)
Q Consensus 113 ~--~--------------------~~~~~~~~~~~~~~-~-~~~~~Sa~~~~gi~~~~~~l~~~~ 153 (181)
. . ...+....+..+++ . .++.+|+.+++|+.+++..+-+++
T Consensus 172 ~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 172 YLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp HHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred hhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 1 0 00001111112223 3 689999999999999999987765
No 288
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.23 E-value=1.6e-10 Score=86.95 Aligned_cols=145 Identities=17% Similarity=0.115 Sum_probs=97.1
Q ss_pred chhHHHHHHhhCC---CCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 4 GKTSLVLRFVKGQ---FFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 4 GKttLl~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
|||||+..+.+.. .++.....++.+.........+ ..+.|+|.||++++-...-.-+...|..++|+|+.+.-..
T Consensus 12 gkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d--~~~~fIDvpgh~~~i~~miag~~~~d~alLvV~~deGl~~ 89 (447)
T COG3276 12 GKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLED--GVMGFIDVPGHPDFISNLLAGLGGIDYALLVVAADEGLMA 89 (447)
T ss_pred cchhhhhhhcccccccchhhhhcCceEeeeeEeccCCC--CceEEeeCCCcHHHHHHHHhhhcCCceEEEEEeCccCcch
Confidence 9999999998743 3344445555555444444443 4788999999998887777777889999999999643222
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHc---CCeEEEEecCCCCCHHHHHHHHHHHHH
Q 030225 81 ERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQEN---GLSFLETSAKSAHNVNELFYEIAKRLA 154 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~---~~~~~~~Sa~~~~gi~~~~~~l~~~~~ 154 (181)
...+.+.-+... .....+++++|+|+.+... ..+...+..... +.+++.+|+.+|+||+++.+.|.+...
T Consensus 90 -qtgEhL~iLdll--gi~~giivltk~D~~d~~r-~e~~i~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk~~l~~L~~ 162 (447)
T COG3276 90 -QTGEHLLILDLL--GIKNGIIVLTKADRVDEAR-IEQKIKQILADLSLANAKIFKTSAKTGRGIEELKNELIDLLE 162 (447)
T ss_pred -hhHHHHHHHHhc--CCCceEEEEeccccccHHH-HHHHHHHHHhhcccccccccccccccCCCHHHHHHHHHHhhh
Confidence 122233333222 2344688999999865321 112222232222 467899999999999999999999884
No 289
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=99.23 E-value=3.2e-10 Score=76.95 Aligned_cols=78 Identities=27% Similarity=0.253 Sum_probs=58.9
Q ss_pred cEEEEEEECCChhHHHHHHHHHHHHHHhCCC--CceEEEEEeCCCCcccccCCHHHHHHHHHHcC--CeEEEEecCCCCC
Q 030225 66 AAAVVVYDITSMDSFERAKKWVQELQRQGNP--NLIMFLVANKVDLEEKRKVKNEEGELYAQENG--LSFLETSAKSAHN 141 (181)
Q Consensus 66 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~g 141 (181)
+.-|+|+|++..+... .+..| ...-++|+||.|+......+.+...+.+++.+ .+++++|+++|+|
T Consensus 119 ~~~v~VidvteGe~~P----------~K~gP~i~~aDllVInK~DLa~~v~~dlevm~~da~~~np~~~ii~~n~ktg~G 188 (202)
T COG0378 119 HLRVVVIDVTEGEDIP----------RKGGPGIFKADLLVINKTDLAPYVGADLEVMARDAKEVNPEAPIIFTNLKTGEG 188 (202)
T ss_pred ceEEEEEECCCCCCCc----------ccCCCceeEeeEEEEehHHhHHHhCccHHHHHHHHHHhCCCCCEEEEeCCCCcC
Confidence 3889999998654321 11011 11358889999998888887788888777765 7999999999999
Q ss_pred HHHHHHHHHHHH
Q 030225 142 VNELFYEIAKRL 153 (181)
Q Consensus 142 i~~~~~~l~~~~ 153 (181)
++++++|+...+
T Consensus 189 ~~~~~~~i~~~~ 200 (202)
T COG0378 189 LDEWLRFIEPQA 200 (202)
T ss_pred HHHHHHHHHhhc
Confidence 999999997654
No 290
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.20 E-value=3.1e-10 Score=93.23 Aligned_cols=106 Identities=21% Similarity=0.203 Sum_probs=68.0
Q ss_pred CCCchhHHHHHHhhCCCCCccc-----------c---ceeeeEE----EEEEEECCeEEEEEEEeCCChhhhhccchhhc
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQE-----------S---TIGAAFF----TQVLSLNEVTIKFDIWDTAGQERYHSLAPMYY 62 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~-----------~---t~~~~~~----~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~ 62 (181)
+++|||||+.+|+......... + .-|.++. ...+..++..+.+.++||||+..|.......+
T Consensus 29 ~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~df~~~~~~~l 108 (731)
T PRK07560 29 IDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHVDFGGDVTRAM 108 (731)
T ss_pred CCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCccChHHHHHHHH
Confidence 4799999999998633221100 0 0011111 11222344577899999999998888888889
Q ss_pred cCCcEEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCc
Q 030225 63 RGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLE 110 (181)
Q Consensus 63 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~ 110 (181)
+.+|++++|+|+...-... ....+...... +.|.++++||+|+.
T Consensus 109 ~~~D~avlVvda~~g~~~~-t~~~~~~~~~~---~~~~iv~iNK~D~~ 152 (731)
T PRK07560 109 RAVDGAIVVVDAVEGVMPQ-TETVLRQALRE---RVKPVLFINKVDRL 152 (731)
T ss_pred HhcCEEEEEEECCCCCCcc-HHHHHHHHHHc---CCCeEEEEECchhh
Confidence 9999999999988653222 22333333232 35678889999975
No 291
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.19 E-value=2.8e-10 Score=80.93 Aligned_cols=128 Identities=16% Similarity=0.141 Sum_probs=72.5
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
||+|||||++.+.+...........|. + .+ ......++.++|+||.. ..+ ....+.+|++++++|++.....
T Consensus 48 ~~~GKstl~~~l~~~~~~~~~~~~~g~-i---~i-~~~~~~~i~~vDtPg~~--~~~-l~~ak~aDvVllviDa~~~~~~ 119 (225)
T cd01882 48 PGVGKTTLIKSLVKNYTKQNISDIKGP-I---TV-VTGKKRRLTFIECPNDI--NAM-IDIAKVADLVLLLIDASFGFEM 119 (225)
T ss_pred CCCCHHHHHHHHHhhcccCcccccccc-E---EE-EecCCceEEEEeCCchH--HHH-HHHHHhcCEEEEEEecCcCCCH
Confidence 689999999999865322111111221 1 11 11245578899999864 222 2345789999999998754332
Q ss_pred HHHHHHHHHHHHhCCCCceE-EEEEeCCCCcccccCC---HHHHHH-HHHHc--CCeEEEEecCCCC
Q 030225 81 ERAKKWVQELQRQGNPNLIM-FLVANKVDLEEKRKVK---NEEGEL-YAQEN--GLSFLETSAKSAH 140 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~p~-ivi~nK~D~~~~~~~~---~~~~~~-~~~~~--~~~~~~~Sa~~~~ 140 (181)
.. ...+..+... +.|. ++++||.|+....... ..+... +..+. +.+++.+||+++-
T Consensus 120 ~~-~~i~~~l~~~---g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~ 182 (225)
T cd01882 120 ET-FEFLNILQVH---GFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHG 182 (225)
T ss_pred HH-HHHHHHHHHc---CCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCC
Confidence 22 2333334333 4564 5599999985322111 111211 22222 3689999999873
No 292
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.19 E-value=1.8e-10 Score=79.91 Aligned_cols=94 Identities=27% Similarity=0.208 Sum_probs=65.9
Q ss_pred hhccchhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHH-----HHcC
Q 030225 54 YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYA-----QENG 128 (181)
Q Consensus 54 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~-----~~~~ 128 (181)
+..++..+++++|++++|+|++++.. .|...+... ..++|+++|+||+|+.... ........+. ...+
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~-----~~~~~l~~~-~~~~~~ilV~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~ 96 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPG-----SLIPRLRLF-GGNNPVILVGNKIDLLPKD-KNLVRIKNWLRAKAAAGLG 96 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCC-----ccchhHHHh-cCCCcEEEEEEchhcCCCC-CCHHHHHHHHHHHHHhhcC
Confidence 57778889999999999999987542 122222222 2468999999999986432 2233333333 2233
Q ss_pred C---eEEEEecCCCCCHHHHHHHHHHHHH
Q 030225 129 L---SFLETSAKSAHNVNELFYEIAKRLA 154 (181)
Q Consensus 129 ~---~~~~~Sa~~~~gi~~~~~~l~~~~~ 154 (181)
. .++.+||+++.|+++++++|.+.+.
T Consensus 97 ~~~~~i~~vSA~~~~gi~eL~~~l~~~l~ 125 (190)
T cd01855 97 LKPKDVILISAKKGWGVEELINAIKKLAK 125 (190)
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3 6899999999999999999988764
No 293
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.19 E-value=3e-10 Score=84.56 Aligned_cols=108 Identities=15% Similarity=0.094 Sum_probs=68.2
Q ss_pred EEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccC--CH
Q 030225 40 TIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKV--KN 117 (181)
Q Consensus 40 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~--~~ 117 (181)
.+.+.|+||+|....... ....+|.++++.+...++.+..+. ..+.+. .-++|+||+|+...... ..
T Consensus 148 g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k---~gi~E~-----aDIiVVNKaDl~~~~~a~~~~ 216 (332)
T PRK09435 148 GYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIK---KGIMEL-----ADLIVINKADGDNKTAARRAA 216 (332)
T ss_pred CCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHH---hhhhhh-----hheEEeehhcccchhHHHHHH
Confidence 467899999997633322 456799999997755555443322 212222 23799999998642211 11
Q ss_pred HHHHHHHHH-------cCCeEEEEecCCCCCHHHHHHHHHHHHHhhCC
Q 030225 118 EEGELYAQE-------NGLSFLETSAKSAHNVNELFYEIAKRLAEVNP 158 (181)
Q Consensus 118 ~~~~~~~~~-------~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~~ 158 (181)
.+....... +..+++.+||+++.|++++++.|.+.+....+
T Consensus 217 ~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~~l~~ 264 (332)
T PRK09435 217 AEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRAALTA 264 (332)
T ss_pred HHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhcc
Confidence 112222211 22579999999999999999999987664443
No 294
>PRK09866 hypothetical protein; Provisional
Probab=99.18 E-value=5.6e-10 Score=88.35 Aligned_cols=109 Identities=15% Similarity=0.190 Sum_probs=73.0
Q ss_pred EEEEEEeCCChhhh-----hccchhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccC
Q 030225 41 IKFDIWDTAGQERY-----HSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKV 115 (181)
Q Consensus 41 ~~~~i~D~~G~~~~-----~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~ 115 (181)
.++.|+||||-... .......+.++|+++||+|..+.-+..+ ...++.+... ....|+++|+||+|+.+....
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk~-~K~~PVILVVNKIDl~dreed 307 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILAV-GQSVPLYVLVNKFDQQDRNSD 307 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHhc-CCCCCEEEEEEcccCCCcccc
Confidence 47899999996431 2223447899999999999987433322 1233334332 223599999999998643333
Q ss_pred CHHHHHHHHHHc----C---CeEEEEecCCCCCHHHHHHHHHH
Q 030225 116 KNEEGELYAQEN----G---LSFLETSAKSAHNVNELFYEIAK 151 (181)
Q Consensus 116 ~~~~~~~~~~~~----~---~~~~~~Sa~~~~gi~~~~~~l~~ 151 (181)
..+....+.... + ..++++||++|.|++.+++.|..
T Consensus 308 dkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 308 DADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred hHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 344555543321 2 35899999999999999999976
No 295
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.18 E-value=3.4e-10 Score=82.92 Aligned_cols=107 Identities=11% Similarity=0.093 Sum_probs=58.5
Q ss_pred CCCchhHHHHHHhhCCCCCcc-ccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhcc-------chhhc--cCCcEEEE
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQ-ESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSL-------APMYY--RGAAAAVV 70 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-------~~~~~--~~~d~~i~ 70 (181)
+|+||||++|+|++....... ....+.......... ...++.+|||||..+.... ...++ ...|+++|
T Consensus 47 tGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~--~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l~~~g~DvVLy 124 (313)
T TIGR00991 47 GGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTR--AGFTLNIIDTPGLIEGGYINDQAVNIIKRFLLGKTIDVLLY 124 (313)
T ss_pred CCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEE--CCeEEEEEECCCCCchHHHHHHHHHHHHHHhhcCCCCEEEE
Confidence 699999999999987643211 111121111122223 3457899999996532111 11222 26899999
Q ss_pred EEECCChhHHHH-HHHHHHHHHHhCC--CCceEEEEEeCCCCc
Q 030225 71 VYDITSMDSFER-AKKWVQELQRQGN--PNLIMFLVANKVDLE 110 (181)
Q Consensus 71 v~d~~~~~s~~~-~~~~~~~~~~~~~--~~~p~ivi~nK~D~~ 110 (181)
|..++.. .+.. -...++.+..... --.++++++|+.|..
T Consensus 125 V~rLD~~-R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~ 166 (313)
T TIGR00991 125 VDRLDAY-RVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFS 166 (313)
T ss_pred EeccCcc-cCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccC
Confidence 9655422 1211 1223333333221 124689999999965
No 296
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.18 E-value=1e-10 Score=97.24 Aligned_cols=68 Identities=18% Similarity=0.160 Sum_probs=52.7
Q ss_pred eEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCc
Q 030225 39 VTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLE 110 (181)
Q Consensus 39 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~ 110 (181)
..+.++++||||+.+|.......++.+|++|+|+|+.++-.... +..+..+.. .+.|.++++||+|+.
T Consensus 96 ~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t-~~~~~~~~~---~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-ETVLRQALG---ERIRPVLTVNKMDRC 163 (843)
T ss_pred CceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccH-HHHHHHHHH---CCCCEEEEEECCccc
Confidence 36788999999999998888888999999999999986543322 233333333 467999999999985
No 297
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.18 E-value=8.1e-10 Score=81.04 Aligned_cols=153 Identities=17% Similarity=0.154 Sum_probs=88.1
Q ss_pred CCchhHHHHHHhhCCCC----C---ccccceeeeEEEEEEEE-------CCeEEEEEEEeCCChhhhhccchhhccCCcE
Q 030225 2 GTGKTSLVLRFVKGQFF----D---FQESTIGAAFFTQVLSL-------NEVTIKFDIWDTAGQERYHSLAPMYYRGAAA 67 (181)
Q Consensus 2 ~~GKttLl~~l~~~~~~----~---~~~~t~~~~~~~~~~~~-------~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 67 (181)
.||||||.++|..-... . .....++.+.....+.+ .+..++|.++|+|||.......-.-.+-.|.
T Consensus 17 DSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLIRtiiggaqiiDl 96 (522)
T KOG0461|consen 17 DSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLIRTIIGGAQIIDL 96 (522)
T ss_pred cCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHHHHHHhhhheeee
Confidence 48999999999753221 1 11122222322222222 3566889999999997654433333445689
Q ss_pred EEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccc--ccCCHHHHH-HHHHH---c----CCeEEEEecC
Q 030225 68 AVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEK--RKVKNEEGE-LYAQE---N----GLSFLETSAK 137 (181)
Q Consensus 68 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~--~~~~~~~~~-~~~~~---~----~~~~~~~Sa~ 137 (181)
.++|+|+....--+....++ +-+. ..+..++|+||+|...+ +....++.. ...+. . +.|++++||.
T Consensus 97 m~lviDv~kG~QtQtAEcLi--ig~~--~c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t~f~g~~PI~~vsa~ 172 (522)
T KOG0461|consen 97 MILVIDVQKGKQTQTAECLI--IGEL--LCKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLESTGFDGNSPIVEVSAA 172 (522)
T ss_pred eeEEEehhcccccccchhhh--hhhh--hccceEEEEeccccccchhhhhHHHHHHHHHHHHHHhcCcCCCCceeEEecC
Confidence 99999998543222222111 1111 23347777888886432 222222222 22221 1 2689999999
Q ss_pred CC----CCHHHHHHHHHHHHHhhCC
Q 030225 138 SA----HNVNELFYEIAKRLAEVNP 158 (181)
Q Consensus 138 ~~----~gi~~~~~~l~~~~~~~~~ 158 (181)
.| ++|.++.+.|.+++.+-+.
T Consensus 173 ~G~~~~~~i~eL~e~l~s~if~P~R 197 (522)
T KOG0461|consen 173 DGYFKEEMIQELKEALESRIFEPKR 197 (522)
T ss_pred CCccchhHHHHHHHHHHHhhcCCCc
Confidence 99 7888888888887765433
No 298
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.17 E-value=2.2e-10 Score=88.80 Aligned_cols=117 Identities=20% Similarity=0.241 Sum_probs=79.4
Q ss_pred eeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHHHH-------HHHHHHHHHHhCCCCc
Q 030225 26 GAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFER-------AKKWVQELQRQGNPNL 98 (181)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~-------~~~~~~~~~~~~~~~~ 98 (181)
|++.......++-....+.|.|+||+..|....-.-...+|++++|+|++- ..|+. .++....++..+ -.
T Consensus 240 GvTm~v~~~~fes~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~-~~FE~gfd~~gQtrEha~llr~Lg--i~ 316 (603)
T KOG0458|consen 240 GVTMDVKTTWFESKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDAST-GEFESGFDPGGQTREHALLLRSLG--IS 316 (603)
T ss_pred ceeEEeeeEEEecCceeEEEecCCCccccchhhhccccccceEEEEEECCc-chhhhccCCCCchHHHHHHHHHcC--cc
Confidence 445555555566666788999999999998888888889999999999874 33331 233333333332 34
Q ss_pred eEEEEEeCCCCcccccCCHHHHHH----HH-HHcC-----CeEEEEecCCCCCHHHH
Q 030225 99 IMFLVANKVDLEEKRKVKNEEGEL----YA-QENG-----LSFLETSAKSAHNVNEL 145 (181)
Q Consensus 99 p~ivi~nK~D~~~~~~~~~~~~~~----~~-~~~~-----~~~~~~Sa~~~~gi~~~ 145 (181)
..+|++||.|+.+..+...++... |. +..| +.++.+|+..|+|+-..
T Consensus 317 qlivaiNKmD~V~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~ 373 (603)
T KOG0458|consen 317 QLIVAINKMDLVSWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI 373 (603)
T ss_pred eEEEEeecccccCccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence 578889999998755544444332 33 3333 47999999999987543
No 299
>PTZ00416 elongation factor 2; Provisional
Probab=99.16 E-value=1.5e-10 Score=96.14 Aligned_cols=67 Identities=19% Similarity=0.228 Sum_probs=51.8
Q ss_pred EEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCc
Q 030225 40 TIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLE 110 (181)
Q Consensus 40 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~ 110 (181)
...+.++||||+.+|.......++.+|++|+|+|+.++-... ....+..+.. .+.|.++++||+|+.
T Consensus 91 ~~~i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~-t~~~~~~~~~---~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 91 PFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQ-TETVLRQALQ---ERIRPVLFINKVDRA 157 (836)
T ss_pred ceEEEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCcc-HHHHHHHHHH---cCCCEEEEEEChhhh
Confidence 567899999999998888888899999999999998753322 2333344433 357899999999985
No 300
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.16 E-value=1.5e-10 Score=77.73 Aligned_cols=95 Identities=18% Similarity=0.150 Sum_probs=64.6
Q ss_pred hccchhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEE
Q 030225 55 HSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLET 134 (181)
Q Consensus 55 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (181)
+.+.+..++++|++++|+|++++..... ..+...+ . ..++|+++++||+|+...... .....+....+.+++.+
T Consensus 3 ~~~~~~i~~~aD~vl~V~D~~~~~~~~~-~~l~~~~-~--~~~~p~iiv~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~i 76 (156)
T cd01859 3 KRLVRRIIKESDVVLEVLDARDPELTRS-RKLERYV-L--ELGKKLLIVLNKADLVPKEVL--EKWKSIKESEGIPVVYV 76 (156)
T ss_pred HHHHHHHHhhCCEEEEEeeCCCCcccCC-HHHHHHH-H--hCCCcEEEEEEhHHhCCHHHH--HHHHHHHHhCCCcEEEE
Confidence 4456778889999999999987543221 1122222 1 136899999999998532111 11112334456789999
Q ss_pred ecCCCCCHHHHHHHHHHHHHh
Q 030225 135 SAKSAHNVNELFYEIAKRLAE 155 (181)
Q Consensus 135 Sa~~~~gi~~~~~~l~~~~~~ 155 (181)
||+++.|++++++.+.+.+..
T Consensus 77 Sa~~~~gi~~L~~~l~~~~~~ 97 (156)
T cd01859 77 SAKERLGTKILRRTIKELAKI 97 (156)
T ss_pred EccccccHHHHHHHHHHHHhh
Confidence 999999999999999887754
No 301
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.14 E-value=4.8e-10 Score=80.68 Aligned_cols=107 Identities=12% Similarity=0.085 Sum_probs=59.1
Q ss_pred CCCchhHHHHHHhhCCCCCcccc-ceeeeEEEEEEEECCeEEEEEEEeCCChhhhhc---c-------chhhcc--CCcE
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQES-TIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHS---L-------APMYYR--GAAA 67 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~---~-------~~~~~~--~~d~ 67 (181)
+|||||||+|+|++......... ..+..........+ ..++.+|||||-..... . ...++. ..|+
T Consensus 40 tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~--g~~i~vIDTPGl~~~~~~~~~~~~~~~~I~~~l~~~~idv 117 (249)
T cd01853 40 TGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVD--GFKLNIIDTPGLLESVMDQRVNRKILSSIKRYLKKKTPDV 117 (249)
T ss_pred CCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEEC--CeEEEEEECCCcCcchhhHHHHHHHHHHHHHHHhccCCCE
Confidence 69999999999998765432211 11112222222233 35788999999643310 0 122333 5788
Q ss_pred EEEEEECCChh-HHHHHHHHHHHHHHhCCC--CceEEEEEeCCCCc
Q 030225 68 AVVVYDITSMD-SFERAKKWVQELQRQGNP--NLIMFLVANKVDLE 110 (181)
Q Consensus 68 ~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~--~~p~ivi~nK~D~~ 110 (181)
++||..++... ... -...++.+.+.... -.+++++.||+|..
T Consensus 118 IL~V~rlD~~r~~~~-d~~llk~I~e~fG~~i~~~~ivV~T~~d~~ 162 (249)
T cd01853 118 VLYVDRLDMYRRDYL-DLPLLRAITDSFGPSIWRNAIVVLTHAASS 162 (249)
T ss_pred EEEEEcCCCCCCCHH-HHHHHHHHHHHhChhhHhCEEEEEeCCccC
Confidence 88887655321 111 12333334332211 24699999999974
No 302
>PRK12289 GTPase RsgA; Reviewed
Probab=99.13 E-value=3.9e-10 Score=84.81 Aligned_cols=92 Identities=15% Similarity=0.166 Sum_probs=67.9
Q ss_pred ccchhhccCCcEEEEEEECCChh-HHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEE
Q 030225 56 SLAPMYYRGAAAAVVVYDITSMD-SFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLET 134 (181)
Q Consensus 56 ~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (181)
.+....+.++|.+++|+|+.++. ....+.+|+..... .++|+++|+||+|+....+. .........+++.++.+
T Consensus 81 ~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~---~~ip~ILVlNK~DLv~~~~~--~~~~~~~~~~g~~v~~i 155 (352)
T PRK12289 81 ELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES---TGLEIVLCLNKADLVSPTEQ--QQWQDRLQQWGYQPLFI 155 (352)
T ss_pred ceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEchhcCChHHH--HHHHHHHHhcCCeEEEE
Confidence 34455689999999999998876 44456777766532 46899999999999542221 12223334678899999
Q ss_pred ecCCCCCHHHHHHHHHHH
Q 030225 135 SAKSAHNVNELFYEIAKR 152 (181)
Q Consensus 135 Sa~~~~gi~~~~~~l~~~ 152 (181)
||+++.|++++++.|...
T Consensus 156 SA~tg~GI~eL~~~L~~k 173 (352)
T PRK12289 156 SVETGIGLEALLEQLRNK 173 (352)
T ss_pred EcCCCCCHHHHhhhhccc
Confidence 999999999999998653
No 303
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.11 E-value=3.7e-10 Score=91.24 Aligned_cols=106 Identities=21% Similarity=0.146 Sum_probs=75.7
Q ss_pred CCchhHHHHHHhhCCCCCccc----------------cceeeeEEEEEEEECCe-EEEEEEEeCCChhhhhccchhhccC
Q 030225 2 GTGKTSLVLRFVKGQFFDFQE----------------STIGAAFFTQVLSLNEV-TIKFDIWDTAGQERYHSLAPMYYRG 64 (181)
Q Consensus 2 ~~GKttLl~~l~~~~~~~~~~----------------~t~~~~~~~~~~~~~~~-~~~~~i~D~~G~~~~~~~~~~~~~~ 64 (181)
.+|||||..+++......... ..-|.++......+.+. .++++++|||||.+|.......++-
T Consensus 20 daGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGHVDFt~EV~rslrv 99 (697)
T COG0480 20 DAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGHVDFTIEVERSLRV 99 (697)
T ss_pred CCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCccccHHHHHHHHHh
Confidence 589999999998532221110 01245555555555555 4899999999999999999999999
Q ss_pred CcEEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcc
Q 030225 65 AAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEE 111 (181)
Q Consensus 65 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~ 111 (181)
+|++++|+|+...-..+.-.-|.+.. + .++|.++++||.|...
T Consensus 100 lDgavvVvdaveGV~~QTEtv~rqa~-~---~~vp~i~fiNKmDR~~ 142 (697)
T COG0480 100 LDGAVVVVDAVEGVEPQTETVWRQAD-K---YGVPRILFVNKMDRLG 142 (697)
T ss_pred hcceEEEEECCCCeeecHHHHHHHHh-h---cCCCeEEEEECccccc
Confidence 99999999998654333333343332 2 4689999999999754
No 304
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.11 E-value=2.6e-09 Score=80.27 Aligned_cols=75 Identities=17% Similarity=0.075 Sum_probs=45.0
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCe---------------EEEEEEEeCCChhh----hhccchh-
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEV---------------TIKFDIWDTAGQER----YHSLAPM- 60 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~----~~~~~~~- 60 (181)
||||||||+|+|.+........|.++.+...-.+.+.+. ..++.+.|+||-.. ...+...
T Consensus 11 PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~g~glg~~f 90 (364)
T PRK09601 11 PNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGEGLGNQF 90 (364)
T ss_pred CCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCChHHHHHHHH
Confidence 899999999999987643222122222222222222221 13689999999532 1122222
Q ss_pred --hccCCcEEEEEEECC
Q 030225 61 --YYRGAAAAVVVYDIT 75 (181)
Q Consensus 61 --~~~~~d~~i~v~d~~ 75 (181)
.++++|++++|+|+.
T Consensus 91 L~~i~~aD~li~VVd~f 107 (364)
T PRK09601 91 LANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHhCCEEEEEEeCC
Confidence 367899999999984
No 305
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=99.10 E-value=5e-10 Score=82.42 Aligned_cols=88 Identities=17% Similarity=0.166 Sum_probs=67.9
Q ss_pred hhhccCCcEEEEEEECCChh-HHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecC
Q 030225 59 PMYYRGAAAAVVVYDITSMD-SFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAK 137 (181)
Q Consensus 59 ~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 137 (181)
+..+.++|++++|+|+.++. ++..+.+|+..+.. .++|+++++||+|+.+..+ ......+....+.+++.+||+
T Consensus 73 ~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~---~~ip~iIVlNK~DL~~~~~--~~~~~~~~~~~g~~v~~vSA~ 147 (287)
T cd01854 73 QVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA---AGIEPVIVLTKADLLDDEE--EELELVEALALGYPVLAVSAK 147 (287)
T ss_pred eeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH---cCCCEEEEEEHHHCCChHH--HHHHHHHHHhCCCeEEEEECC
Confidence 44588999999999999887 78888888877654 3688999999999954311 112233344568899999999
Q ss_pred CCCCHHHHHHHHHH
Q 030225 138 SAHNVNELFYEIAK 151 (181)
Q Consensus 138 ~~~gi~~~~~~l~~ 151 (181)
++.|+++++.+|..
T Consensus 148 ~g~gi~~L~~~L~~ 161 (287)
T cd01854 148 TGEGLDELREYLKG 161 (287)
T ss_pred CCccHHHHHhhhcc
Confidence 99999999988764
No 306
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.10 E-value=5.7e-10 Score=82.68 Aligned_cols=104 Identities=21% Similarity=0.084 Sum_probs=64.7
Q ss_pred EEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHH
Q 030225 40 TIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEE 119 (181)
Q Consensus 40 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~ 119 (181)
.+.+.|+||+|..... ...+..+|.++++-+.. +-+++......+ ..+|.++++||+|+..........
T Consensus 126 g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~---~~~el~~~~~~l-----~~~~~ivv~NK~Dl~~~~~~~~~~ 194 (300)
T TIGR00750 126 GYDVIIVETVGVGQSE---VDIANMADTFVVVTIPG---TGDDLQGIKAGL-----MEIADIYVVNKADGEGATNVTIAR 194 (300)
T ss_pred CCCEEEEeCCCCchhh---hHHHHhhceEEEEecCC---ccHHHHHHHHHH-----hhhccEEEEEcccccchhHHHHHH
Confidence 4678999999864222 22466688888885433 333444433333 346779999999986432211000
Q ss_pred ------HHHHHH---HcCCeEEEEecCCCCCHHHHHHHHHHHHH
Q 030225 120 ------GELYAQ---ENGLSFLETSAKSAHNVNELFYEIAKRLA 154 (181)
Q Consensus 120 ------~~~~~~---~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~ 154 (181)
...+.. .+..+++.+||++++|+++++++|.+...
T Consensus 195 ~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 195 LMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT 238 (300)
T ss_pred HHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence 011111 12246899999999999999999998644
No 307
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.09 E-value=2.4e-09 Score=77.89 Aligned_cols=75 Identities=15% Similarity=0.053 Sum_probs=45.9
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCe---------------EEEEEEEeCCChhh----hhccchh-
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEV---------------TIKFDIWDTAGQER----YHSLAPM- 60 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~----~~~~~~~- 60 (181)
||||||||+|+|.+........|..+.+...-.+.+.+. ..++.++|+||-.. ...+...
T Consensus 7 PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~glg~~f 86 (274)
T cd01900 7 PNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGEGLGNKF 86 (274)
T ss_pred CCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhhHHHHHH
Confidence 899999999999987763322233322222222233322 23589999999532 1122222
Q ss_pred --hccCCcEEEEEEECC
Q 030225 61 --YYRGAAAAVVVYDIT 75 (181)
Q Consensus 61 --~~~~~d~~i~v~d~~ 75 (181)
.++++|++++|+|+.
T Consensus 87 L~~i~~~D~li~VV~~f 103 (274)
T cd01900 87 LSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHhCCEEEEEEeCc
Confidence 356899999999874
No 308
>PRK00098 GTPase RsgA; Reviewed
Probab=99.08 E-value=5.8e-10 Score=82.49 Aligned_cols=86 Identities=22% Similarity=0.209 Sum_probs=64.5
Q ss_pred hccCCcEEEEEEECCChhHHHH-HHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCC
Q 030225 61 YYRGAAAAVVVYDITSMDSFER-AKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSA 139 (181)
Q Consensus 61 ~~~~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 139 (181)
.+.++|++++|+|+.+++.... +.+|+..+.. .++|+++++||+|+.+..+. ........+..+++++++||+++
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~---~~ip~iIVlNK~DL~~~~~~-~~~~~~~~~~~g~~v~~vSA~~g 152 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA---NGIKPIIVLNKIDLLDDLEE-ARELLALYRAIGYDVLELSAKEG 152 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEhHHcCCCHHH-HHHHHHHHHHCCCeEEEEeCCCC
Confidence 4589999999999988766444 5677766643 46899999999999532221 12233445567889999999999
Q ss_pred CCHHHHHHHHH
Q 030225 140 HNVNELFYEIA 150 (181)
Q Consensus 140 ~gi~~~~~~l~ 150 (181)
+|++++++.+.
T Consensus 153 ~gi~~L~~~l~ 163 (298)
T PRK00098 153 EGLDELKPLLA 163 (298)
T ss_pred ccHHHHHhhcc
Confidence 99999998874
No 309
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.08 E-value=4.8e-09 Score=77.98 Aligned_cols=130 Identities=18% Similarity=0.269 Sum_probs=92.5
Q ss_pred cceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCCh----------hHHHHHHHHHHHHHH
Q 030225 23 STIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSM----------DSFERAKKWVQELQR 92 (181)
Q Consensus 23 ~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~ 92 (181)
+|.| +....+.+.+ ..+.+.|+||+...+.-|.++|.+++++|||+++++- ..+.+...+++.+..
T Consensus 181 ~T~G--I~e~~F~~k~--~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n 256 (354)
T KOG0082|consen 181 PTTG--IVEVEFTIKG--LKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICN 256 (354)
T ss_pred CcCC--eeEEEEEeCC--CceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhc
Confidence 4444 3333444444 6788999999999999999999999999999999862 234444556666655
Q ss_pred hC-CCCceEEEEEeCCCCccc---------------ccCCHHHHHHHHHHc----------CCeEEEEecCCCCCHHHHH
Q 030225 93 QG-NPNLIMFLVANKVDLEEK---------------RKVKNEEGELYAQEN----------GLSFLETSAKSAHNVNELF 146 (181)
Q Consensus 93 ~~-~~~~p~ivi~nK~D~~~~---------------~~~~~~~~~~~~~~~----------~~~~~~~Sa~~~~gi~~~~ 146 (181)
.. -.+.++++++||.|+-+. -....+++..|++.. .+.++.+.|.+..+|+.+|
T Consensus 257 ~~~F~~tsiiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf 336 (354)
T KOG0082|consen 257 NKWFANTSIILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVF 336 (354)
T ss_pred CcccccCcEEEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHH
Confidence 32 267899999999998321 013344555554432 2456778999999999999
Q ss_pred HHHHHHHHhh
Q 030225 147 YEIAKRLAEV 156 (181)
Q Consensus 147 ~~l~~~~~~~ 156 (181)
+.+.+.+...
T Consensus 337 ~av~d~Ii~~ 346 (354)
T KOG0082|consen 337 DAVTDTIIQN 346 (354)
T ss_pred HHHHHHHHHH
Confidence 9999988765
No 310
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.07 E-value=4.1e-10 Score=81.75 Aligned_cols=114 Identities=16% Similarity=0.169 Sum_probs=78.5
Q ss_pred EEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccc--CCHH
Q 030225 41 IKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRK--VKNE 118 (181)
Q Consensus 41 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~--~~~~ 118 (181)
-++.|.|+|||+-.....-.-..=-|+.++|++++.+-.-....+.+..+.-. .-+.++++-||+|+..... ..++
T Consensus 86 R~VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIi--gik~iiIvQNKIDlV~~E~AlE~y~ 163 (415)
T COG5257 86 RRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEII--GIKNIIIVQNKIDLVSRERALENYE 163 (415)
T ss_pred EEEEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhh--ccceEEEEecccceecHHHHHHHHH
Confidence 36899999999854433222223358999999998754444445555554333 3356889999999975322 2334
Q ss_pred HHHHHHHHc---CCeEEEEecCCCCCHHHHHHHHHHHHHhh
Q 030225 119 EGELYAQEN---GLSFLETSAKSAHNVNELFYEIAKRLAEV 156 (181)
Q Consensus 119 ~~~~~~~~~---~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~ 156 (181)
+..+|.+.. +.+++.+||..+.||+-+++.|.+.+..-
T Consensus 164 qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP 204 (415)
T COG5257 164 QIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTP 204 (415)
T ss_pred HHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCC
Confidence 555555543 57999999999999999999998877653
No 311
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.06 E-value=1.8e-09 Score=76.12 Aligned_cols=155 Identities=17% Similarity=0.168 Sum_probs=85.3
Q ss_pred CCCchhHHHHHHhhCCCCCcccc--ceeeeEEEEEEEECCeEEEEEEEeCCChhhhh-------c-cc---hhhccCCcE
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQES--TIGAAFFTQVLSLNEVTIKFDIWDTAGQERYH-------S-LA---PMYYRGAAA 67 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~-~~---~~~~~~~d~ 67 (181)
+||||||++|.+++......... .............++. .+.++||||-.+.. . +. .....+.++
T Consensus 9 tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~--~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~~~g~ha 86 (212)
T PF04548_consen 9 TGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGR--QVTVIDTPGLFDSDGSDEEIIREIKRCLSLCSPGPHA 86 (212)
T ss_dssp TTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTE--EEEEEE--SSEETTEEHHHHHHHHHHHHHHTTT-ESE
T ss_pred CCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecce--EEEEEeCCCCCCCcccHHHHHHHHHHHHHhccCCCeE
Confidence 59999999999998877554321 2222333334455664 56799999932111 1 11 112456899
Q ss_pred EEEEEECCChhH-HHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCC-------HHHHHHHHHHcCCeEEEEecC--
Q 030225 68 AVVVYDITSMDS-FERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVK-------NEEGELYAQENGLSFLETSAK-- 137 (181)
Q Consensus 68 ~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~-------~~~~~~~~~~~~~~~~~~Sa~-- 137 (181)
++||+.+..... -.....++..+.... --..++|+.|..|......+. ......+.+..+-.|+..+.+
T Consensus 87 ~llVi~~~r~t~~~~~~l~~l~~~FG~~-~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R~~~f~n~~~ 165 (212)
T PF04548_consen 87 FLLVIPLGRFTEEDREVLELLQEIFGEE-IWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGGRYHVFNNKTK 165 (212)
T ss_dssp EEEEEETTB-SHHHHHHHHHHHHHHCGG-GGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTCEEECCTTHH
T ss_pred EEEEEecCcchHHHHHHHHHHHHHccHH-HHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCCEEEEEecccc
Confidence 999999873221 112223333332221 123588888888854433210 112345566667778777766
Q ss_pred ----CCCCHHHHHHHHHHHHHhhCC
Q 030225 138 ----SAHNVNELFYEIAKRLAEVNP 158 (181)
Q Consensus 138 ----~~~gi~~~~~~l~~~~~~~~~ 158 (181)
....+.++++.+-+.+.++..
T Consensus 166 ~~~~~~~qv~~Ll~~ie~mv~~n~g 190 (212)
T PF04548_consen 166 DKEKDESQVSELLEKIEEMVQENGG 190 (212)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred chhhhHHHHHHHHHHHHHHHHHcCC
Confidence 335688888888887777753
No 312
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.04 E-value=4e-10 Score=78.21 Aligned_cols=109 Identities=21% Similarity=0.417 Sum_probs=68.4
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECC-eEEEEEEEeCCChhhhhc-----cchhhccCCcEEEEEEEC
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNE-VTIKFDIWDTAGQERYHS-----LAPMYYRGAAAAVVVYDI 74 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~~~i~D~~G~~~~~~-----~~~~~~~~~d~~i~v~d~ 74 (181)
+|||||+|--.+. .++........|.++....-.... +++.+.+||++|++.+.. .....+++.+++|+|||+
T Consensus 13 sGsGKsSmrsiiF-~ny~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~fmen~~~~q~d~iF~nV~vli~vFDv 91 (295)
T KOG3886|consen 13 SGSGKSSMRSIIF-ANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEEFMENYLSSQEDNIFRNVQVLIYVFDV 91 (295)
T ss_pred CCCCccccchhhh-hhhhhhhhhccCCcceeeehhhhhhhhheeehhccCCcHHHHHHHHhhcchhhheeheeeeeeeec
Confidence 6999999754433 333222222233222222222211 346789999999974432 345678999999999999
Q ss_pred CChhH---HHHHHHHHHHHHHhCCCCceEEEEEeCCCCcc
Q 030225 75 TSMDS---FERAKKWVQELQRQGNPNLIMFLVANKVDLEE 111 (181)
Q Consensus 75 ~~~~s---~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~ 111 (181)
+..+- +...+.-++.+..+ .|...+++..+|.|+..
T Consensus 92 es~e~~~D~~~yqk~Le~ll~~-SP~AkiF~l~hKmDLv~ 130 (295)
T KOG3886|consen 92 ESREMEKDFHYYQKCLEALLQN-SPEAKIFCLLHKMDLVQ 130 (295)
T ss_pred cchhhhhhHHHHHHHHHHHHhc-CCcceEEEEEeechhcc
Confidence 87543 34445555566665 37788999999999853
No 313
>PRK13768 GTPase; Provisional
Probab=99.04 E-value=3.3e-09 Score=76.76 Aligned_cols=112 Identities=19% Similarity=0.196 Sum_probs=70.0
Q ss_pred EEEEEeCCChhhh---hccchhhcc---C--CcEEEEEEECCChhHHHH--HHHHHHHHHHhCCCCceEEEEEeCCCCcc
Q 030225 42 KFDIWDTAGQERY---HSLAPMYYR---G--AAAAVVVYDITSMDSFER--AKKWVQELQRQGNPNLIMFLVANKVDLEE 111 (181)
Q Consensus 42 ~~~i~D~~G~~~~---~~~~~~~~~---~--~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~p~ivi~nK~D~~~ 111 (181)
.+.+||+||+.+. +..+..+++ . ++++++++|+........ ...|+...... ..+.|+++++||+|+..
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~-~~~~~~i~v~nK~D~~~ 176 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQL-RLGLPQIPVLNKADLLS 176 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHH-HcCCCEEEEEEhHhhcC
Confidence 5889999998653 333333322 2 899999999965432222 12233322222 24789999999999864
Q ss_pred cccCCH--HH------------------------HHHHHHHcC--CeEEEEecCCCCCHHHHHHHHHHHHH
Q 030225 112 KRKVKN--EE------------------------GELYAQENG--LSFLETSAKSAHNVNELFYEIAKRLA 154 (181)
Q Consensus 112 ~~~~~~--~~------------------------~~~~~~~~~--~~~~~~Sa~~~~gi~~~~~~l~~~~~ 154 (181)
..+... .. ..+..+..+ .+++++|+++++|++++.++|.+.+.
T Consensus 177 ~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~ 247 (253)
T PRK13768 177 EEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFC 247 (253)
T ss_pred chhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcC
Confidence 322100 00 001122334 47899999999999999999988764
No 314
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=99.04 E-value=4.6e-10 Score=81.65 Aligned_cols=56 Identities=20% Similarity=0.195 Sum_probs=40.3
Q ss_pred CceEEEEEeCCCCcccccCCHHHHHHHHHHc--CCeEEEEecCCCCCHHHHHHHHHHH
Q 030225 97 NLIMFLVANKVDLEEKRKVKNEEGELYAQEN--GLSFLETSAKSAHNVNELFYEIAKR 152 (181)
Q Consensus 97 ~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~gi~~~~~~l~~~ 152 (181)
..+-++++||+|+........+......+.. +.+++.+||++|+|++++++||.++
T Consensus 230 ~~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 230 AAASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred hcCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 3457899999999643222233334444443 4789999999999999999999774
No 315
>PRK12288 GTPase RsgA; Reviewed
Probab=99.03 E-value=2.1e-09 Score=80.89 Aligned_cols=88 Identities=17% Similarity=0.163 Sum_probs=66.7
Q ss_pred ccCCcEEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccC-CHHHHHHHHHHcCCeEEEEecCCCC
Q 030225 62 YRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKV-KNEEGELYAQENGLSFLETSAKSAH 140 (181)
Q Consensus 62 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~ 140 (181)
..++|.+++|+++....++..+.+|+..... .++|.++|+||+|+....+. ...+........+.+++++||++++
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~---~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~ 194 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACET---LGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGE 194 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHHh---cCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCc
Confidence 4679999999999887889999999875532 46789999999999643211 1122223344568899999999999
Q ss_pred CHHHHHHHHHHH
Q 030225 141 NVNELFYEIAKR 152 (181)
Q Consensus 141 gi~~~~~~l~~~ 152 (181)
|+++++++|...
T Consensus 195 GideL~~~L~~k 206 (347)
T PRK12288 195 GLEELEAALTGR 206 (347)
T ss_pred CHHHHHHHHhhC
Confidence 999999998653
No 316
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.03 E-value=3.9e-09 Score=75.27 Aligned_cols=113 Identities=17% Similarity=0.195 Sum_probs=65.8
Q ss_pred EEEEEEeCCChhhh---h----ccchhh-ccCCcEEEEEEECCC---hhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCC
Q 030225 41 IKFDIWDTAGQERY---H----SLAPMY-YRGAAAAVVVYDITS---MDSFERAKKWVQELQRQGNPNLIMFLVANKVDL 109 (181)
Q Consensus 41 ~~~~i~D~~G~~~~---~----~~~~~~-~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~ 109 (181)
+...++||||+-+- . .+...+ -....++++|+|... +..|-.--.+--.+. .....|++++.||.|+
T Consensus 116 ~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSil--yktklp~ivvfNK~Dv 193 (366)
T KOG1532|consen 116 FDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSIL--YKTKLPFIVVFNKTDV 193 (366)
T ss_pred cCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHH--HhccCCeEEEEecccc
Confidence 56889999998431 1 111111 123568888988654 333322111111122 2367899999999998
Q ss_pred ccccc-----CCHHHHHHHHH-------------------H--cCCeEEEEecCCCCCHHHHHHHHHHHHHh
Q 030225 110 EEKRK-----VKNEEGELYAQ-------------------E--NGLSFLETSAKSAHNVNELFYEIAKRLAE 155 (181)
Q Consensus 110 ~~~~~-----~~~~~~~~~~~-------------------~--~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~ 155 (181)
.+... -+.+.-++-.+ + .++..+.|||.+|.|..++|..+.+.+.+
T Consensus 194 ~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdE 265 (366)
T KOG1532|consen 194 SDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDE 265 (366)
T ss_pred cccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHH
Confidence 65211 00111111111 0 24678999999999999999998876655
No 317
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=99.00 E-value=1.3e-09 Score=84.20 Aligned_cols=152 Identities=22% Similarity=0.369 Sum_probs=112.4
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
.++|||+|+++++.+.+.+...|. |. .+.+++..++....+.+-|.+|+.. ..|-..+|++||||.+.|..+|
T Consensus 39 ~~sgktalvhr~ltgty~~~e~~e-~~-~~kkE~vv~gqs~lLlirdeg~~~~-----aQft~wvdavIfvf~~~d~~s~ 111 (749)
T KOG0705|consen 39 SQSGKTALVHRYLTGTYTQDESPE-GG-RFKKEVVVDGQSHLLLIRDEGGHPD-----AQFCQWVDAVVFVFSVEDEQSF 111 (749)
T ss_pred ccCCceeeeeeeccceeccccCCc-Cc-cceeeEEeeccceEeeeecccCCch-----hhhhhhccceEEEEEeccccCH
Confidence 368999999999999998766443 33 4466677888888889999998543 4466779999999999999999
Q ss_pred HHHHHHHHHHHHhC-CCCceEEEEEeCCCCcc--cccCCHHHHHHH-HHHcCCeEEEEecCCCCCHHHHHHHHHHHHHhh
Q 030225 81 ERAKKWVQELQRQG-NPNLIMFLVANKVDLEE--KRKVKNEEGELY-AQENGLSFLETSAKSAHNVNELFYEIAKRLAEV 156 (181)
Q Consensus 81 ~~~~~~~~~~~~~~-~~~~p~ivi~nK~D~~~--~~~~~~~~~~~~-~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~ 156 (181)
+.+..+.-.+..+. ....|.++++++.-... .+.+...++.++ ++...+.+|+.++.+|.++..+|+.++.++...
T Consensus 112 q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGlnv~rvf~~~~~k~i~~ 191 (749)
T KOG0705|consen 112 QAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCATYGLNVERVFQEVAQKIVQL 191 (749)
T ss_pred HHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchhhhhhHHHHHHHHHHHHHHH
Confidence 98887766664432 25677888777644322 233333444444 444458899999999999999999999988776
Q ss_pred CCC
Q 030225 157 NPS 159 (181)
Q Consensus 157 ~~~ 159 (181)
++.
T Consensus 192 ~~~ 194 (749)
T KOG0705|consen 192 RKY 194 (749)
T ss_pred Hhh
Confidence 544
No 318
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=98.99 E-value=1.4e-08 Score=76.91 Aligned_cols=144 Identities=16% Similarity=0.226 Sum_probs=83.1
Q ss_pred CCchhHHHHHHhhC----CCCC----------cccccee---e----eE---EEEEE-EECCeEEEEEEEeCCChhh---
Q 030225 2 GTGKTSLVLRFVKG----QFFD----------FQESTIG---A----AF---FTQVL-SLNEVTIKFDIWDTAGQER--- 53 (181)
Q Consensus 2 ~~GKttLl~~l~~~----~~~~----------~~~~t~~---~----~~---~~~~~-~~~~~~~~~~i~D~~G~~~--- 53 (181)
++|||||+++|.+. .... ..++..| + -+ ...++ ..++...++.++||+|-..
T Consensus 27 rtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~VrlIDcvG~~v~Ga 106 (492)
T TIGR02836 27 RTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRLVDCVGYTVKGA 106 (492)
T ss_pred CCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEEEECCCcccCCC
Confidence 79999999999987 3321 1112222 1 11 12222 2345567889999999311
Q ss_pred -----hhc------c---------------chhhcc-CCcEEEEEE-ECC--C--hhHH-HHHHHHHHHHHHhCCCCceE
Q 030225 54 -----YHS------L---------------APMYYR-GAAAAVVVY-DIT--S--MDSF-ERAKKWVQELQRQGNPNLIM 100 (181)
Q Consensus 54 -----~~~------~---------------~~~~~~-~~d~~i~v~-d~~--~--~~s~-~~~~~~~~~~~~~~~~~~p~ 100 (181)
-.. . +...+. .+|+.|+|. |.+ + ++.+ +.-.+++..+... ++|+
T Consensus 107 lG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~eLk~~---~kPf 183 (492)
T TIGR02836 107 LGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEELKEL---NKPF 183 (492)
T ss_pred ccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHHHHhc---CCCE
Confidence 000 0 223345 789888888 654 1 1222 2234666666554 7899
Q ss_pred EEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCC--CCCHHHHHHHHH
Q 030225 101 FLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKS--AHNVNELFYEIA 150 (181)
Q Consensus 101 ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~--~~gi~~~~~~l~ 150 (181)
++++||.|..... .......+..+++.+++.+|+.+ .+.|..+++.++
T Consensus 184 iivlN~~dp~~~e--t~~l~~~l~eky~vpvl~v~c~~l~~~DI~~il~~vL 233 (492)
T TIGR02836 184 IILLNSTHPYHPE--TEALRQELEEKYDVPVLAMDVESMRESDILSVLEEVL 233 (492)
T ss_pred EEEEECcCCCCch--hHHHHHHHHHHhCCceEEEEHHHcCHHHHHHHHHHHH
Confidence 9999999942211 33334455666788888887764 345555555443
No 319
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=98.96 E-value=1.1e-09 Score=79.67 Aligned_cols=145 Identities=19% Similarity=0.172 Sum_probs=89.5
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChh---------hhhccchhhccCCcEEEEE
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE---------RYHSLAPMYYRGAAAAVVV 71 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~---------~~~~~~~~~~~~~d~~i~v 71 (181)
.|+|||||+++|.+....+..+-.-+.+..........++ .+.+.||-|-- .|.... .-...+|+++.|
T Consensus 187 TNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~-~vlltDTvGFisdLP~~LvaAF~ATL-eeVaeadlllHv 264 (410)
T KOG0410|consen 187 TNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGN-FVLLTDTVGFISDLPIQLVAAFQATL-EEVAEADLLLHV 264 (410)
T ss_pred cCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCc-EEEEeechhhhhhCcHHHHHHHHHHH-HHHhhcceEEEE
Confidence 4899999999999766655443322222223333344333 46788998831 222222 235679999999
Q ss_pred EECCChhHHHHHHHHHHHHHHhCCCCceE----EEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHH
Q 030225 72 YDITSMDSFERAKKWVQELQRQGNPNLIM----FLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFY 147 (181)
Q Consensus 72 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~----ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~ 147 (181)
.|++.|+.-......+..+....-+..|. +=|=||.|...... . ..+++ .+.+||++|+|++++.+
T Consensus 265 vDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~-e-------~E~n~--~v~isaltgdgl~el~~ 334 (410)
T KOG0410|consen 265 VDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEV-E-------EEKNL--DVGISALTGDGLEELLK 334 (410)
T ss_pred eecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccC-c-------cccCC--ccccccccCccHHHHHH
Confidence 99999887655555555565543333333 33346666533111 1 11222 57789999999999999
Q ss_pred HHHHHHHhhC
Q 030225 148 EIAKRLAEVN 157 (181)
Q Consensus 148 ~l~~~~~~~~ 157 (181)
.+-.++....
T Consensus 335 a~~~kv~~~t 344 (410)
T KOG0410|consen 335 AEETKVASET 344 (410)
T ss_pred HHHHHhhhhh
Confidence 9887776543
No 320
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.95 E-value=5.2e-09 Score=79.41 Aligned_cols=95 Identities=28% Similarity=0.335 Sum_probs=69.1
Q ss_pred hhhhhccchhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHH----HHHHH
Q 030225 51 QERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGE----LYAQE 126 (181)
Q Consensus 51 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~----~~~~~ 126 (181)
.+.|..+...+...++++++|+|+.|... .|...+.+.. .+.|+++|+||+|+.. .....+... +++++
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~-----s~~~~l~~~~-~~~piilV~NK~DLl~-k~~~~~~~~~~l~~~~k~ 122 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFEG-----SLIPELKRFV-GGNPVLLVGNKIDLLP-KSVNLSKIKEWMKKRAKE 122 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCCC-----CccHHHHHHh-CCCCEEEEEEchhhCC-CCCCHHHHHHHHHHHHHH
Confidence 45677788888899999999999987542 2444444432 3678999999999864 222333333 34556
Q ss_pred cCC---eEEEEecCCCCCHHHHHHHHHHH
Q 030225 127 NGL---SFLETSAKSAHNVNELFYEIAKR 152 (181)
Q Consensus 127 ~~~---~~~~~Sa~~~~gi~~~~~~l~~~ 152 (181)
.++ .++.+||+++.|++++++.|.+.
T Consensus 123 ~g~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 123 LGLKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred cCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 676 48999999999999999999664
No 321
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=98.94 E-value=5.1e-09 Score=71.09 Aligned_cols=63 Identities=19% Similarity=0.171 Sum_probs=43.0
Q ss_pred EEEEEeCCChhh----hhccchhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCC
Q 030225 42 KFDIWDTAGQER----YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKV 107 (181)
Q Consensus 42 ~~~i~D~~G~~~----~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~ 107 (181)
.+.|+|+||-.. ...++..++..+|++|+|.+++....-.+...+.+..... ...+++|.||.
T Consensus 102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~---~~~~i~V~nk~ 168 (168)
T PF00350_consen 102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPD---KSRTIFVLNKA 168 (168)
T ss_dssp SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTT---CSSEEEEEE-G
T ss_pred ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCC---CCeEEEEEcCC
Confidence 478999999642 2345677889999999999999855544444444444332 34488888884
No 322
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.94 E-value=8e-09 Score=77.74 Aligned_cols=149 Identities=15% Similarity=0.161 Sum_probs=70.2
Q ss_pred CCCchhHHHHHHhhCCCCCcccccee---eeEEEEEEEECCeEEEEEEEeCCChhhhhccc-----hhhccCCcEEEEEE
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIG---AAFFTQVLSLNEVTIKFDIWDTAGQERYHSLA-----PMYYRGAAAAVVVY 72 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~---~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~-----~~~~~~~d~~i~v~ 72 (181)
+|+|||||+|+|.+-.-.+.....+| ++.....+.....+ .+.+||.||-....... ..-+...|.+|++.
T Consensus 44 sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~p-nv~lWDlPG~gt~~f~~~~Yl~~~~~~~yD~fiii~ 122 (376)
T PF05049_consen 44 SGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKFP-NVTLWDLPGIGTPNFPPEEYLKEVKFYRYDFFIIIS 122 (376)
T ss_dssp TTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS-T-TEEEEEE--GGGSS--HHHHHHHTTGGG-SEEEEEE
T ss_pred CCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCCC-CCeEEeCCCCCCCCCCHHHHHHHccccccCEEEEEe
Confidence 69999999999986332221111111 12222222222211 36799999964322222 22356679888876
Q ss_pred ECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCc--c-----cccCCHH----HHHHHHHH----cC---CeEEEE
Q 030225 73 DITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLE--E-----KRKVKNE----EGELYAQE----NG---LSFLET 134 (181)
Q Consensus 73 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~--~-----~~~~~~~----~~~~~~~~----~~---~~~~~~ 134 (181)
+- .|....-++...... .++|+.+|-+|.|.. . .+...++ +.++.+.+ .+ .++|-+
T Consensus 123 s~----rf~~ndv~La~~i~~--~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k~gv~~P~VFLV 196 (376)
T PF05049_consen 123 SE----RFTENDVQLAKEIQR--MGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQKAGVSEPQVFLV 196 (376)
T ss_dssp SS----S--HHHHHHHHHHHH--TT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHCTT-SS--EEEB
T ss_pred CC----CCchhhHHHHHHHHH--cCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHHcCCCcCceEEE
Confidence 63 344433333333333 378999999999951 1 1122222 22222222 23 368999
Q ss_pred ecCCC--CCHHHHHHHHHHHHHhh
Q 030225 135 SAKSA--HNVNELFYEIAKRLAEV 156 (181)
Q Consensus 135 Sa~~~--~gi~~~~~~l~~~~~~~ 156 (181)
|+.+- .++..+.+.|...+...
T Consensus 197 S~~dl~~yDFp~L~~tL~~dLp~~ 220 (376)
T PF05049_consen 197 SSFDLSKYDFPKLEETLEKDLPAH 220 (376)
T ss_dssp -TTTTTSTTHHHHHHHHHHHS-GG
T ss_pred eCCCcccCChHHHHHHHHHHhHHH
Confidence 98864 56888888887766554
No 323
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=98.93 E-value=7.6e-09 Score=74.49 Aligned_cols=130 Identities=16% Similarity=0.156 Sum_probs=82.7
Q ss_pred CchhHHHHHHhhC----------------CCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCc
Q 030225 3 TGKTSLVLRFVKG----------------QFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAA 66 (181)
Q Consensus 3 ~GKttLl~~l~~~----------------~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 66 (181)
=|||||..++... +.+++ ..-|+++....+.++-.+-++-..|+|||..|-.+.-.-..+.|
T Consensus 23 HGKTTLtaAit~~la~~~~~~~~~y~~id~aPeE--k~rGITIntahveyet~~rhyahVDcPGHaDYvKNMItgAaqmD 100 (394)
T COG0050 23 HGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEE--KARGITINTAHVEYETANRHYAHVDCPGHADYVKNMITGAAQMD 100 (394)
T ss_pred CchhhHHHHHHHHHHhhccccccchhhhccCchH--hhcCceeccceeEEecCCceEEeccCCChHHHHHHHhhhHHhcC
Confidence 4999999887531 11111 12355555555556555667789999999999877666667889
Q ss_pred EEEEEEECCChhHHHHHHHHHHHHHHhCCCCce-EEEEEeCCCCccccc---CCHHHHHHHHHHcCC-----eEEEEecC
Q 030225 67 AAVVVYDITSMDSFERAKKWVQELQRQGNPNLI-MFLVANKVDLEEKRK---VKNEEGELYAQENGL-----SFLETSAK 137 (181)
Q Consensus 67 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivi~nK~D~~~~~~---~~~~~~~~~~~~~~~-----~~~~~Sa~ 137 (181)
+.|+|++++|..- ...+..+...+. -+.| ++++.||+|+.+..+ ..+.+.+.+..++++ |++..||.
T Consensus 101 gAILVVsA~dGpm-PqTrEHiLlarq---vGvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~f~gd~~Pii~gSal 176 (394)
T COG0050 101 GAILVVAATDGPM-PQTREHILLARQ---VGVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYGFPGDDTPIIRGSAL 176 (394)
T ss_pred ccEEEEEcCCCCC-Ccchhhhhhhhh---cCCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcCCCCCCcceeechhh
Confidence 9999999998422 222222222222 2454 556689999987443 233456667777764 67777776
Q ss_pred C
Q 030225 138 S 138 (181)
Q Consensus 138 ~ 138 (181)
.
T Consensus 177 ~ 177 (394)
T COG0050 177 K 177 (394)
T ss_pred h
Confidence 4
No 324
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.91 E-value=5.9e-09 Score=71.11 Aligned_cols=99 Identities=22% Similarity=0.145 Sum_probs=65.2
Q ss_pred CCChh-hhhccchhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHH
Q 030225 48 TAGQE-RYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQE 126 (181)
Q Consensus 48 ~~G~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~ 126 (181)
.||+. +........++++|++++|+|++++..... ..++..+ .++|.++++||+|+...... ....++.+.
T Consensus 2 ~~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~-~~i~~~~-----~~k~~ilVlNK~Dl~~~~~~--~~~~~~~~~ 73 (171)
T cd01856 2 FPGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRN-PLLEKIL-----GNKPRIIVLNKADLADPKKT--KKWLKYFES 73 (171)
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCC-hhhHhHh-----cCCCEEEEEehhhcCChHHH--HHHHHHHHh
Confidence 56765 333344667899999999999987543211 1122211 35789999999998532111 111233333
Q ss_pred cCCeEEEEecCCCCCHHHHHHHHHHHHH
Q 030225 127 NGLSFLETSAKSAHNVNELFYEIAKRLA 154 (181)
Q Consensus 127 ~~~~~~~~Sa~~~~gi~~~~~~l~~~~~ 154 (181)
.+..++.+||+++.|++++.+.+.+.+.
T Consensus 74 ~~~~vi~iSa~~~~gi~~L~~~l~~~l~ 101 (171)
T cd01856 74 KGEKVLFVNAKSGKGVKKLLKAAKKLLK 101 (171)
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHHH
Confidence 4567899999999999999999988763
No 325
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.85 E-value=1.8e-07 Score=69.80 Aligned_cols=75 Identities=15% Similarity=0.028 Sum_probs=47.1
Q ss_pred CCCchhHHHHHHhhCCCC-CccccceeeeE--EEEEEEE--------------CCeEEEEEEEeCCCh----hhhhccch
Q 030225 1 MGTGKTSLVLRFVKGQFF-DFQESTIGAAF--FTQVLSL--------------NEVTIKFDIWDTAGQ----ERYHSLAP 59 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~-~~~~~t~~~~~--~~~~~~~--------------~~~~~~~~i~D~~G~----~~~~~~~~ 59 (181)
||||||||.|++...... ..| |..+++- ....+.. .-....+.++|++|. ..-+.+-.
T Consensus 11 PNVGKSTlFnAlT~~~a~~aNY-PF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GAs~GeGLGN 89 (372)
T COG0012 11 PNVGKSTLFNALTKAGAEIANY-PFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGASKGEGLGN 89 (372)
T ss_pred CCCcHHHHHHHHHcCCccccCC-CcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCcccCCCcch
Confidence 899999999999987643 233 3222111 1111111 113467899999885 33444555
Q ss_pred hh---ccCCcEEEEEEECCC
Q 030225 60 MY---YRGAAAAVVVYDITS 76 (181)
Q Consensus 60 ~~---~~~~d~~i~v~d~~~ 76 (181)
.| ++++|+++.|+|+.+
T Consensus 90 kFL~~IRevdaI~hVVr~f~ 109 (372)
T COG0012 90 KFLDNIREVDAIIHVVRCFG 109 (372)
T ss_pred HHHHhhhhcCeEEEEEEecC
Confidence 55 578999999999873
No 326
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.85 E-value=1.8e-08 Score=67.76 Aligned_cols=89 Identities=12% Similarity=0.154 Sum_probs=57.7
Q ss_pred hccCCcEEEEEEECCChhH--HHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCC
Q 030225 61 YYRGAAAAVVVYDITSMDS--FERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKS 138 (181)
Q Consensus 61 ~~~~~d~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 138 (181)
.++++|++++|+|+.++.. ...+.+++. .. ..++|+++++||+|+...... ......+.+.+....+.+||++
T Consensus 5 ~l~~aD~il~VvD~~~p~~~~~~~i~~~l~---~~-~~~~p~ilVlNKiDl~~~~~~-~~~~~~~~~~~~~~~~~iSa~~ 79 (157)
T cd01858 5 VIDSSDVVIQVLDARDPMGTRCKHVEEYLK---KE-KPHKHLIFVLNKCDLVPTWVT-ARWVKILSKEYPTIAFHASINN 79 (157)
T ss_pred hhhhCCEEEEEEECCCCccccCHHHHHHHH---hc-cCCCCEEEEEEchhcCCHHHH-HHHHHHHhcCCcEEEEEeeccc
Confidence 4678999999999998632 222333332 22 345899999999998542211 1112222222223357899999
Q ss_pred CCCHHHHHHHHHHHHH
Q 030225 139 AHNVNELFYEIAKRLA 154 (181)
Q Consensus 139 ~~gi~~~~~~l~~~~~ 154 (181)
+.|++++++.|.+.+.
T Consensus 80 ~~~~~~L~~~l~~~~~ 95 (157)
T cd01858 80 PFGKGSLIQLLRQFSK 95 (157)
T ss_pred cccHHHHHHHHHHHHh
Confidence 9999999999977543
No 327
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=98.83 E-value=1.4e-08 Score=80.28 Aligned_cols=104 Identities=21% Similarity=0.230 Sum_probs=72.1
Q ss_pred CCchhHHHHHHhhCCCCCccccc-----------------eeeeEEEEE---EEECCeEEEEEEEeCCChhhhhccchhh
Q 030225 2 GTGKTSLVLRFVKGQFFDFQEST-----------------IGAAFFTQV---LSLNEVTIKFDIWDTAGQERYHSLAPMY 61 (181)
Q Consensus 2 ~~GKttLl~~l~~~~~~~~~~~t-----------------~~~~~~~~~---~~~~~~~~~~~i~D~~G~~~~~~~~~~~ 61 (181)
+.|||+|+..|..+..+.....+ .++.....+ -..++..+-+++.|||||.+|.....+.
T Consensus 138 hhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTPGHVnF~DE~ta~ 217 (971)
T KOG0468|consen 138 HHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTPGHVNFSDETTAS 217 (971)
T ss_pred ccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCCCcccchHHHHHH
Confidence 57999999999876554332211 111111111 1235667889999999999999999999
Q ss_pred ccCCcEEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCC
Q 030225 62 YRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDL 109 (181)
Q Consensus 62 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~ 109 (181)
++.+|++++++|+.+.-.+.. .+.++.. ...+.|+++++||.|.
T Consensus 218 l~~sDgvVlvvDv~EGVmlnt-Er~ikha---iq~~~~i~vviNKiDR 261 (971)
T KOG0468|consen 218 LRLSDGVVLVVDVAEGVMLNT-ERIIKHA---IQNRLPIVVVINKVDR 261 (971)
T ss_pred hhhcceEEEEEEcccCceeeH-HHHHHHH---HhccCcEEEEEehhHH
Confidence 999999999999987655432 2222222 2357899999999996
No 328
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.82 E-value=7.2e-08 Score=70.66 Aligned_cols=130 Identities=17% Similarity=0.185 Sum_probs=67.9
Q ss_pred CCCchhHHHHHHhhCCCCCcc----------ccceeeeEEEEEEEECCeEEEEEEEeCCChh------------------
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQ----------ESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE------------------ 52 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~----------~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~------------------ 52 (181)
+|+|||||+|.|++....... .++..+......+.-++..+.+.++||||-.
T Consensus 13 sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~~~I~~yI~~ 92 (281)
T PF00735_consen 13 SGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCWEPIVDYIES 92 (281)
T ss_dssp TTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhhHHHHHHHHH
Confidence 699999999999986554332 1233344444455667888999999999921
Q ss_pred hhhcc-------chhhc--cCCcEEEEEEECCChhHHHHH-HHHHHHHHHhCCCCceEEEEEeCCCCccccc--CCHHHH
Q 030225 53 RYHSL-------APMYY--RGAAAAVVVYDITSMDSFERA-KKWVQELQRQGNPNLIMFLVANKVDLEEKRK--VKNEEG 120 (181)
Q Consensus 53 ~~~~~-------~~~~~--~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~--~~~~~~ 120 (181)
.|... .+..+ ...|+++|.++++... +..+ ...++.+ ...+++|-|+.|+|.....+ ......
T Consensus 93 qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~-L~~~Di~~mk~L----s~~vNvIPvIaKaD~lt~~el~~~k~~i 167 (281)
T PF00735_consen 93 QFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHG-LKPLDIEFMKRL----SKRVNVIPVIAKADTLTPEELQAFKQRI 167 (281)
T ss_dssp HHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSS-S-HHHHHHHHHH----TTTSEEEEEESTGGGS-HHHHHHHHHHH
T ss_pred HHHHHHHHhhcccccCcCCCCcceEEEEEcCCCcc-chHHHHHHHHHh----cccccEEeEEecccccCHHHHHHHHHHH
Confidence 01000 00011 2468999999987521 1111 1223333 24578999999999754322 223334
Q ss_pred HHHHHHcCCeEEEEe
Q 030225 121 ELYAQENGLSFLETS 135 (181)
Q Consensus 121 ~~~~~~~~~~~~~~S 135 (181)
..-++.+++.++...
T Consensus 168 ~~~l~~~~I~~f~f~ 182 (281)
T PF00735_consen 168 REDLEENNIKIFDFP 182 (281)
T ss_dssp HHHHHHTT--S----
T ss_pred HHHHHHcCceeeccc
Confidence 455666777766543
No 329
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.79 E-value=4.4e-08 Score=71.85 Aligned_cols=101 Identities=21% Similarity=0.201 Sum_probs=67.3
Q ss_pred CCChh-hhhccchhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHH
Q 030225 48 TAGQE-RYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQE 126 (181)
Q Consensus 48 ~~G~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~ 126 (181)
.|||+ .........++.+|++++|+|+.++.+... .++.... .++|+++|+||+|+.+.... .....+.+.
T Consensus 4 fpgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~--~~i~~~l----~~kp~IiVlNK~DL~~~~~~--~~~~~~~~~ 75 (276)
T TIGR03596 4 FPGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRN--PMIDEIR----GNKPRLIVLNKADLADPAVT--KQWLKYFEE 75 (276)
T ss_pred ChHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCC--hhHHHHH----CCCCEEEEEEccccCCHHHH--HHHHHHHHH
Confidence 57876 233344667899999999999987644221 1111111 25799999999998532111 111222333
Q ss_pred cCCeEEEEecCCCCCHHHHHHHHHHHHHhh
Q 030225 127 NGLSFLETSAKSAHNVNELFYEIAKRLAEV 156 (181)
Q Consensus 127 ~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~ 156 (181)
.+.+++.+||+++.|++++++.+.+.+.+.
T Consensus 76 ~~~~vi~iSa~~~~gi~~L~~~i~~~~~~~ 105 (276)
T TIGR03596 76 KGIKALAINAKKGKGVKKIIKAAKKLLKEK 105 (276)
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHHHHh
Confidence 456789999999999999999998877654
No 330
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=98.78 E-value=4.3e-08 Score=75.32 Aligned_cols=115 Identities=16% Similarity=0.214 Sum_probs=83.1
Q ss_pred eEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCCh----------hHHHHHHHHHHHHHHh-CCCCceEEEEEeCC
Q 030225 39 VTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSM----------DSFERAKKWVQELQRQ-GNPNLIMFLVANKV 107 (181)
Q Consensus 39 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~-~~~~~p~ivi~nK~ 107 (181)
....+.++|++|+...+.-|..+|.+++++|||+++++- ..+.+....+..+... ...+.|++|++||.
T Consensus 234 ~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~ 313 (389)
T PF00503_consen 234 GSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKI 313 (389)
T ss_dssp TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-H
T ss_pred cccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecH
Confidence 445778999999999999999999999999999998752 2355555566666553 22588999999999
Q ss_pred CCcc-----------------cc-cCCHHHHHHHHHHc------------CCeEEEEecCCCCCHHHHHHHHHHHH
Q 030225 108 DLEE-----------------KR-KVKNEEGELYAQEN------------GLSFLETSAKSAHNVNELFYEIAKRL 153 (181)
Q Consensus 108 D~~~-----------------~~-~~~~~~~~~~~~~~------------~~~~~~~Sa~~~~gi~~~~~~l~~~~ 153 (181)
|+-. .. +...+.+..|+... .+.++.++|.+.+.++.+|+.+.+.+
T Consensus 314 D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~~~i 389 (389)
T PF00503_consen 314 DLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVKDII 389 (389)
T ss_dssp HHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhcCcC
Confidence 9621 01 13445566655542 12467889999999999999887653
No 331
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.78 E-value=4.9e-08 Score=65.51 Aligned_cols=85 Identities=14% Similarity=0.045 Sum_probs=55.3
Q ss_pred cEEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHH
Q 030225 66 AAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNEL 145 (181)
Q Consensus 66 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~ 145 (181)
|++++|+|+.++.+... .++.. ......++|+++++||+|+....++ ......+....+..++.+||+++.|++++
T Consensus 1 Dvvl~VvD~~~p~~~~~--~~i~~-~~~~~~~~p~IiVlNK~Dl~~~~~~-~~~~~~~~~~~~~~ii~vSa~~~~gi~~L 76 (155)
T cd01849 1 DVILEVLDARDPLGTRS--PDIER-VLIKEKGKKLILVLNKADLVPKEVL-RKWLAYLRHSYPTIPFKISATNGQGIEKK 76 (155)
T ss_pred CEEEEEEeccCCccccC--HHHHH-HHHhcCCCCEEEEEechhcCCHHHH-HHHHHHHHhhCCceEEEEeccCCcChhhH
Confidence 78999999988755432 23321 1112256899999999998542211 01111232233556899999999999999
Q ss_pred HHHHHHHHH
Q 030225 146 FYEIAKRLA 154 (181)
Q Consensus 146 ~~~l~~~~~ 154 (181)
++.+.+...
T Consensus 77 ~~~i~~~~~ 85 (155)
T cd01849 77 ESAFTKQTN 85 (155)
T ss_pred HHHHHHHhH
Confidence 999987643
No 332
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.69 E-value=7.7e-08 Score=70.96 Aligned_cols=101 Identities=21% Similarity=0.190 Sum_probs=67.8
Q ss_pred CCChhh-hhccchhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHH
Q 030225 48 TAGQER-YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQE 126 (181)
Q Consensus 48 ~~G~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~ 126 (181)
.|||+. -.......++.+|++++|+|+.++.+... .++.... .++|.++|+||+|+.+... ......+..+
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~----~~kp~iiVlNK~DL~~~~~--~~~~~~~~~~ 78 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSEN--PMIDKII----GNKPRLLILNKSDLADPEV--TKKWIEYFEE 78 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHh----CCCCEEEEEEchhcCCHHH--HHHHHHHHHH
Confidence 788863 23334667889999999999987644221 1122221 2578999999999853211 1112222334
Q ss_pred cCCeEEEEecCCCCCHHHHHHHHHHHHHhh
Q 030225 127 NGLSFLETSAKSAHNVNELFYEIAKRLAEV 156 (181)
Q Consensus 127 ~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~ 156 (181)
.+.+++.+||+++.|++.+++.+.+.+.+.
T Consensus 79 ~~~~vi~vSa~~~~gi~~L~~~l~~~l~~~ 108 (287)
T PRK09563 79 QGIKALAINAKKGQGVKKILKAAKKLLKEK 108 (287)
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHHHHH
Confidence 467889999999999999999998877654
No 333
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.68 E-value=1.9e-07 Score=74.61 Aligned_cols=109 Identities=10% Similarity=0.094 Sum_probs=61.8
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeE-EEEEEEECCeEEEEEEEeCCChhhhh-------cc---chhhcc--CCcE
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAF-FTQVLSLNEVTIKFDIWDTAGQERYH-------SL---APMYYR--GAAA 67 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~---~~~~~~--~~d~ 67 (181)
||+||||++|.|++...........+++. .......++ ..+.++||||-.... .+ ...++. .+|+
T Consensus 127 TGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG--~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~Lsk~gpDV 204 (763)
T TIGR00993 127 SGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQG--VKIRVIDTPGLKSSASDQSKNEKILSSVKKFIKKNPPDI 204 (763)
T ss_pred CCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECC--ceEEEEECCCCCccccchHHHHHHHHHHHHHHhcCCCCE
Confidence 69999999999998764332211112222 122223333 468899999964321 11 122333 5899
Q ss_pred EEEEEECCChhHHHHHHHHHHHHHHhCCC--CceEEEEEeCCCCcc
Q 030225 68 AVVVYDITSMDSFERAKKWVQELQRQGNP--NLIMFLVANKVDLEE 111 (181)
Q Consensus 68 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~p~ivi~nK~D~~~ 111 (181)
++||..+.......+-..+++.+...... -..+||+.|+.|...
T Consensus 205 VLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 205 VLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP 250 (763)
T ss_pred EEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence 99998875332221223445555443321 134788899999753
No 334
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.68 E-value=2.2e-07 Score=66.44 Aligned_cols=68 Identities=15% Similarity=0.154 Sum_probs=42.7
Q ss_pred EEEEEEeCCChhh-------------hhccchhhcc-CCcEEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeC
Q 030225 41 IKFDIWDTAGQER-------------YHSLAPMYYR-GAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANK 106 (181)
Q Consensus 41 ~~~~i~D~~G~~~-------------~~~~~~~~~~-~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK 106 (181)
..|.++|+||-.. ...+...|++ ..+++++|+|+...-.-.......+.+. ..+.|+++|+||
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld---~~~~rti~ViTK 201 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVD---PQGERTIGVITK 201 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHH---HcCCcEEEEEEC
Confidence 4688999999631 1224556677 4569999998764222112222223332 246899999999
Q ss_pred CCCcc
Q 030225 107 VDLEE 111 (181)
Q Consensus 107 ~D~~~ 111 (181)
.|..+
T Consensus 202 ~D~~~ 206 (240)
T smart00053 202 LDLMD 206 (240)
T ss_pred CCCCC
Confidence 99854
No 335
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.68 E-value=9.2e-08 Score=63.15 Aligned_cols=76 Identities=20% Similarity=0.250 Sum_probs=52.2
Q ss_pred hhccCCcEEEEEEECCChhHHH--HHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecC
Q 030225 60 MYYRGAAAAVVVYDITSMDSFE--RAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAK 137 (181)
Q Consensus 60 ~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 137 (181)
..++++|++++|+|+.++.+.. .+.+|+... ..++|+++++||+|+..... ......+.+..+..++++||+
T Consensus 7 ~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~----~~~k~~iivlNK~DL~~~~~--~~~~~~~~~~~~~~ii~iSa~ 80 (141)
T cd01857 7 RVVERSDIVVQIVDARNPLLFRPPDLERYVKEV----DPRKKNILLLNKADLLTEEQ--RKAWAEYFKKEGIVVVFFSAL 80 (141)
T ss_pred HHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc----cCCCcEEEEEechhcCCHHH--HHHHHHHHHhcCCeEEEEEec
Confidence 4578899999999998876533 334444332 24689999999999854222 123344555567889999999
Q ss_pred CCCC
Q 030225 138 SAHN 141 (181)
Q Consensus 138 ~~~g 141 (181)
++.+
T Consensus 81 ~~~~ 84 (141)
T cd01857 81 KENA 84 (141)
T ss_pred CCCc
Confidence 8764
No 336
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.67 E-value=8.9e-07 Score=65.86 Aligned_cols=135 Identities=13% Similarity=0.148 Sum_probs=82.9
Q ss_pred CCCchhHHHHHHhhCCCCCc----------cccceeeeEEEEEEEECCeEEEEEEEeCCChhhh-------hc-------
Q 030225 1 MGTGKTSLVLRFVKGQFFDF----------QESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERY-------HS------- 56 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~----------~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~------- 56 (181)
+|+|||||+|.|++...... ..+++........+.-++..+.+.++||||--++ ..
T Consensus 32 sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~~we~I~~yI~~ 111 (373)
T COG5019 32 SGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSKCWEPIVDYIDD 111 (373)
T ss_pred CCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccccHHHHHHHHHH
Confidence 68999999999998644322 2355556666667777888999999999993111 00
Q ss_pred ------------cchhhcc--CCcEEEEEEECCChhHHHHH-HHHHHHHHHhCCCCceEEEEEeCCCCcccc--cCCHHH
Q 030225 57 ------------LAPMYYR--GAAAAVVVYDITSMDSFERA-KKWVQELQRQGNPNLIMFLVANKVDLEEKR--KVKNEE 119 (181)
Q Consensus 57 ------------~~~~~~~--~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~--~~~~~~ 119 (181)
.+...+. .+|+++|.+.++. ..+..+ ...++.+. ..+.++-|+-|+|..... ....+.
T Consensus 112 q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptg-h~l~~~DIe~Mk~ls----~~vNlIPVI~KaD~lT~~El~~~K~~ 186 (373)
T COG5019 112 QFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTG-HGLKPLDIEAMKRLS----KRVNLIPVIAKADTLTDDELAEFKER 186 (373)
T ss_pred HHHHHHHHhhccccccccccCceEEEEEEecCCC-CCCCHHHHHHHHHHh----cccCeeeeeeccccCCHHHHHHHHHH
Confidence 0010122 3688888888764 333322 22333332 345688888899985432 333445
Q ss_pred HHHHHHHcCCeEEEEecCCCCCH
Q 030225 120 GELYAQENGLSFLETSAKSAHNV 142 (181)
Q Consensus 120 ~~~~~~~~~~~~~~~Sa~~~~gi 142 (181)
..+.+..+++++|. -.+.+.-
T Consensus 187 I~~~i~~~nI~vf~--pyd~e~~ 207 (373)
T COG5019 187 IREDLEQYNIPVFD--PYDPEDD 207 (373)
T ss_pred HHHHHHHhCCceeC--CCCcccc
Confidence 56677778888875 2444433
No 337
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.66 E-value=2.1e-07 Score=65.43 Aligned_cols=152 Identities=23% Similarity=0.338 Sum_probs=90.3
Q ss_pred CCchhHHHHHHhhCCCCCccccceeeeEEEE--EEEECCeEEEEEEEeCCChhhhhc---cchhhccCCcEEEEEEECCC
Q 030225 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQ--VLSLNEVTIKFDIWDTAGQERYHS---LAPMYYRGAAAAVVVYDITS 76 (181)
Q Consensus 2 ~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~--~~~~~~~~~~~~i~D~~G~~~~~~---~~~~~~~~~d~~i~v~d~~~ 76 (181)
.|||||+-........+. .|....-..+ .-.+....+.|.+||.||+..+.. -....++.+-++|||+|+.|
T Consensus 37 RsGKsSI~KVVFhkMsPn---eTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALifvIDaQd 113 (347)
T KOG3887|consen 37 RSGKSSIQKVVFHKMSPN---ETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALIFVIDAQD 113 (347)
T ss_pred ccCcchhhheeeeccCCC---ceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeEEEEEechH
Confidence 489999865544433222 1221111111 112233557789999999976543 23567899999999999875
Q ss_pred hhHHHHHHHHHHHHHH--hCCCCceEEEEEeCCCCcccc-------cCCHHHHHHHHHHcC-----CeEEEEecCCCCCH
Q 030225 77 MDSFERAKKWVQELQR--QGNPNLIMFLVANKVDLEEKR-------KVKNEEGELYAQENG-----LSFLETSAKSAHNV 142 (181)
Q Consensus 77 ~~s~~~~~~~~~~~~~--~~~~~~p~ivi~nK~D~~~~~-------~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi 142 (181)
+-.+.+.++...+.+ ...++..+=+.+.|.|..... .+...... -..+.| +.++-+|..+ ..|
T Consensus 114 -dy~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d-~l~d~gle~v~vsf~LTSIyD-HSI 190 (347)
T KOG3887|consen 114 -DYMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTND-ELADAGLEKVQVSFYLTSIYD-HSI 190 (347)
T ss_pred -HHHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhH-HHHhhhhccceEEEEEeeecc-hHH
Confidence 334445554444443 234788888999999964321 11111111 122222 3567777777 559
Q ss_pred HHHHHHHHHHHHhhCCC
Q 030225 143 NELFYEIAKRLAEVNPS 159 (181)
Q Consensus 143 ~~~~~~l~~~~~~~~~~ 159 (181)
-|.|..+++++....|.
T Consensus 191 fEAFSkvVQkLipqLpt 207 (347)
T KOG3887|consen 191 FEAFSKVVQKLIPQLPT 207 (347)
T ss_pred HHHHHHHHHHHhhhchh
Confidence 99999998888776664
No 338
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=98.64 E-value=2.1e-07 Score=68.43 Aligned_cols=130 Identities=18% Similarity=0.156 Sum_probs=82.8
Q ss_pred CchhHHHHHHhh---C-------------CCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCc
Q 030225 3 TGKTSLVLRFVK---G-------------QFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAA 66 (181)
Q Consensus 3 ~GKttLl~~l~~---~-------------~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 66 (181)
=|||||-.++.. . +.+++. .-|+++....+.+.-.+-++-=.|||||.+|-.+.-.-..+-|
T Consensus 65 HGKTTLTaAITkila~~g~A~~~kydeID~APEEk--aRGITIn~aHveYeTa~RhYaH~DCPGHADYIKNMItGaaqMD 142 (449)
T KOG0460|consen 65 HGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEK--ARGITINAAHVEYETAKRHYAHTDCPGHADYIKNMITGAAQMD 142 (449)
T ss_pred CCchhHHHHHHHHHHhccccccccHhhhhcChhhh--hccceEeeeeeeeeccccccccCCCCchHHHHHHhhcCccccC
Confidence 399999887752 1 111222 2244555555555555556668899999999877666667789
Q ss_pred EEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccc---cCCHHHHHHHHHHcC-----CeEEEEecC
Q 030225 67 AAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR---KVKNEEGELYAQENG-----LSFLETSAK 137 (181)
Q Consensus 67 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~---~~~~~~~~~~~~~~~-----~~~~~~Sa~ 137 (181)
+.|+|+.++|.. +...++.+-..+... -..+++.+||.|+.+.. ++.+-+++++..+++ +|++.-||+
T Consensus 143 GaILVVaatDG~-MPQTrEHlLLArQVG--V~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf~Gd~~PvI~GSAL 218 (449)
T KOG0460|consen 143 GAILVVAATDGP-MPQTREHLLLARQVG--VKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGFDGDNTPVIRGSAL 218 (449)
T ss_pred ceEEEEEcCCCC-CcchHHHHHHHHHcC--CceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCCCCCCCCeeecchh
Confidence 999999999843 333444443333332 23477779999997433 333445667777776 478877765
No 339
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.64 E-value=1e-07 Score=74.72 Aligned_cols=108 Identities=19% Similarity=0.151 Sum_probs=74.3
Q ss_pred CchhHHHHHHhhCCCCCccc----------------cceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCc
Q 030225 3 TGKTSLVLRFVKGQFFDFQE----------------STIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAA 66 (181)
Q Consensus 3 ~GKttLl~~l~~~~~~~~~~----------------~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 66 (181)
+|||||-++.+-...-.... ..-|++..+.-..+.+.+++++++|||||..|.......++-.|
T Consensus 50 sgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDFT~EVeRALrVlD 129 (721)
T KOG0465|consen 50 AGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDFTFEVERALRVLD 129 (721)
T ss_pred cCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeEEEEehhhhhhcc
Confidence 79999999876422211000 11244455555555566889999999999999998899999999
Q ss_pred EEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccc
Q 030225 67 AAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRK 114 (181)
Q Consensus 67 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~ 114 (181)
+.++++|...+---+...-|. ++.++ ++|.+..+||.|..+...
T Consensus 130 GaVlvl~aV~GVqsQt~tV~r-Q~~ry---~vP~i~FiNKmDRmGa~~ 173 (721)
T KOG0465|consen 130 GAVLVLDAVAGVESQTETVWR-QMKRY---NVPRICFINKMDRMGASP 173 (721)
T ss_pred CeEEEEEcccceehhhHHHHH-HHHhc---CCCeEEEEehhhhcCCCh
Confidence 999999988543333333443 33333 689999999999866443
No 340
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=98.63 E-value=8.2e-08 Score=72.43 Aligned_cols=136 Identities=16% Similarity=0.132 Sum_probs=92.1
Q ss_pred CCchhHHHHHHhhCCCC------Cccc----------cceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCC
Q 030225 2 GTGKTSLVLRFVKGQFF------DFQE----------STIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGA 65 (181)
Q Consensus 2 ~~GKttLl~~l~~~~~~------~~~~----------~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 65 (181)
.+||||--.|++-.... ...- ..-|+++.+.-+++++..++++++||||+..|+.....+++--
T Consensus 47 dagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf~leverclrvl 126 (753)
T KOG0464|consen 47 DAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDFRLEVERCLRVL 126 (753)
T ss_pred cCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceEEEEHHHHHHHh
Confidence 47999999998631110 0000 1236778888889999999999999999999999999999999
Q ss_pred cEEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCe--EEEEecCCCCCHH
Q 030225 66 AAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLS--FLETSAKSAHNVN 143 (181)
Q Consensus 66 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~--~~~~Sa~~~~gi~ 143 (181)
|+++.|||.+..-.-+.+.-|.+. ...+.|-..++||+|...... +......-.+.+.. .+.+..-...|+.
T Consensus 127 dgavav~dasagve~qtltvwrqa----dk~~ip~~~finkmdk~~anf--e~avdsi~ekl~ak~l~l~lpi~eak~fn 200 (753)
T KOG0464|consen 127 DGAVAVFDASAGVEAQTLTVWRQA----DKFKIPAHCFINKMDKLAANF--ENAVDSIEEKLGAKALKLQLPIGEAKGFN 200 (753)
T ss_pred cCeEEEEeccCCcccceeeeehhc----cccCCchhhhhhhhhhhhhhh--hhHHHHHHHHhCCceEEEEeccccccccc
Confidence 999999999976555555666433 235788889999999754222 12223333445543 2334444455553
No 341
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.63 E-value=3.2e-06 Score=60.04 Aligned_cols=145 Identities=20% Similarity=0.177 Sum_probs=86.1
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhc-------cchhhccCCcEEEEEEE
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHS-------LAPMYYRGAAAAVVVYD 73 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-------~~~~~~~~~d~~i~v~d 73 (181)
|.+||||||..+.........-..++.+...-.+.+++. .+++.|.||--+-.+ ..-+..+.+|+++.|.|
T Consensus 71 PSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga--~IQllDLPGIieGAsqgkGRGRQviavArtaDlilMvLD 148 (364)
T KOG1486|consen 71 PSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGA--NIQLLDLPGIIEGASQGKGRGRQVIAVARTADLILMVLD 148 (364)
T ss_pred CCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCc--eEEEecCcccccccccCCCCCceEEEEeecccEEEEEec
Confidence 789999999988764432221122233333444555555 466999999432111 12344678999999999
Q ss_pred CCChhHHHH-HHHHHHHHHHhCC---C-----------------------------------------------------
Q 030225 74 ITSMDSFER-AKKWVQELQRQGN---P----------------------------------------------------- 96 (181)
Q Consensus 74 ~~~~~s~~~-~~~~~~~~~~~~~---~----------------------------------------------------- 96 (181)
++..+.-.+ +.+.+..+--.-. |
T Consensus 149 atk~e~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~~lT~~~ek~i~~ILheykI~Naevl~ReD~t~Ddf 228 (364)
T KOG1486|consen 149 ATKSEDQREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDEKLIYTILHEYKIHNAEVLFREDCTVDDF 228 (364)
T ss_pred CCcchhHHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEEeeeeccccccHHHHHHHHHHHeeccceEEEecCCChHHH
Confidence 997655442 3444444321101 1
Q ss_pred ---------CceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHH
Q 030225 97 ---------NLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLA 154 (181)
Q Consensus 97 ---------~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~ 154 (181)
-.+.+.+-||+|. ++.++..++++.-+ -+-+|+...-|++.+++.+-+.+.
T Consensus 229 IDvi~gnr~Y~~ClYvYnKID~-----vs~eevdrlAr~Pn--svViSC~m~lnld~lle~iWe~l~ 288 (364)
T KOG1486|consen 229 IDVIEGNRVYIKCLYVYNKIDQ-----VSIEEVDRLARQPN--SVVISCNMKLNLDRLLERIWEELN 288 (364)
T ss_pred HHHHhccceEEEEEEEeeccce-----ecHHHHHHHhcCCC--cEEEEeccccCHHHHHHHHHHHhc
Confidence 1444555566653 55666667665443 344677888889988888877553
No 342
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.61 E-value=3.1e-08 Score=70.57 Aligned_cols=102 Identities=21% Similarity=0.148 Sum_probs=59.2
Q ss_pred EEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHH
Q 030225 41 IKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEG 120 (181)
Q Consensus 41 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~ 120 (181)
+.+.|++|.|--... -....-+|.+++|.-+.-.+..+.++.=+.++ .-++++||.|+...... ..+.
T Consensus 122 ~D~IiiETVGvGQsE---~~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEi--------aDi~vVNKaD~~gA~~~-~~~l 189 (266)
T PF03308_consen 122 FDVIIIETVGVGQSE---VDIADMADTVVLVLVPGLGDEIQAIKAGIMEI--------ADIFVVNKADRPGADRT-VRDL 189 (266)
T ss_dssp -SEEEEEEESSSTHH---HHHHTTSSEEEEEEESSTCCCCCTB-TTHHHH---------SEEEEE--SHHHHHHH-HHHH
T ss_pred CCEEEEeCCCCCccH---HHHHHhcCeEEEEecCCCccHHHHHhhhhhhh--------ccEEEEeCCChHHHHHH-HHHH
Confidence 567788887632222 12344589999999988766654433322222 45788999996443221 1121
Q ss_pred HH---HHHH----cCCeEEEEecCCCCCHHHHHHHHHHHHH
Q 030225 121 EL---YAQE----NGLSFLETSAKSAHNVNELFYEIAKRLA 154 (181)
Q Consensus 121 ~~---~~~~----~~~~~~~~Sa~~~~gi~~~~~~l~~~~~ 154 (181)
.. +... +..+++.+||.++.|++++.+.|.+...
T Consensus 190 ~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~ 230 (266)
T PF03308_consen 190 RSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHRD 230 (266)
T ss_dssp HHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 21 1111 2358999999999999999999987433
No 343
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.61 E-value=5.1e-07 Score=65.47 Aligned_cols=107 Identities=20% Similarity=0.122 Sum_probs=65.0
Q ss_pred EEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCH--
Q 030225 40 TIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKN-- 117 (181)
Q Consensus 40 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~-- 117 (181)
.+.+.|++|.|--..... ...-+|.+++|.=..-.+..+.++.=+..+ --++++||.|..+...--.
T Consensus 143 G~DvIIVETVGvGQsev~---I~~~aDt~~~v~~pg~GD~~Q~iK~GimEi--------aDi~vINKaD~~~A~~a~r~l 211 (323)
T COG1703 143 GYDVIIVETVGVGQSEVD---IANMADTFLVVMIPGAGDDLQGIKAGIMEI--------ADIIVINKADRKGAEKAAREL 211 (323)
T ss_pred CCCEEEEEecCCCcchhH---HhhhcceEEEEecCCCCcHHHHHHhhhhhh--------hheeeEeccChhhHHHHHHHH
Confidence 356788888875433322 233478888887766666555444322222 3578899999654211100
Q ss_pred HHHHHHH----HH--cCCeEEEEecCCCCCHHHHHHHHHHHHHhhC
Q 030225 118 EEGELYA----QE--NGLSFLETSAKSAHNVNELFYEIAKRLAEVN 157 (181)
Q Consensus 118 ~~~~~~~----~~--~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~ 157 (181)
..+.... .. +..+++.+||.+|+|+.++++.+.+...-..
T Consensus 212 ~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~~~ 257 (323)
T COG1703 212 RSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKFLT 257 (323)
T ss_pred HHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHHHH
Confidence 1111111 11 2357999999999999999999988665543
No 344
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.61 E-value=1.4e-06 Score=65.20 Aligned_cols=148 Identities=14% Similarity=0.172 Sum_probs=87.1
Q ss_pred CCCchhHHHHHHhhCCCCCc---------cccceeeeEEEEEEEECCeEEEEEEEeCCChhh-------hh---------
Q 030225 1 MGTGKTSLVLRFVKGQFFDF---------QESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER-------YH--------- 55 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~---------~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------~~--------- 55 (181)
+|.|||||+|.|+...+... ...+..+......+.-++..++++++||||--+ |.
T Consensus 30 sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w~pi~~yi~~q 109 (366)
T KOG2655|consen 30 SGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCWRPIVNYIDSQ 109 (366)
T ss_pred CCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccchhhhHHHHHH
Confidence 68999999999998744322 223445555556666678889999999999211 11
Q ss_pred ---------ccchhhcc--CCcEEEEEEECCChhHHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCcccc--cCCHHHHH
Q 030225 56 ---------SLAPMYYR--GAAAAVVVYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEEKR--KVKNEEGE 121 (181)
Q Consensus 56 ---------~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivi~nK~D~~~~~--~~~~~~~~ 121 (181)
.+.+..+. .+++++|.+..+.. .+..+. ..++.+. ..+.++-|+-|+|..... ........
T Consensus 110 ~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~gh-gL~p~Di~~Mk~l~----~~vNiIPVI~KaD~lT~~El~~~K~~I~ 184 (366)
T KOG2655|consen 110 FDQYLDEESRLNRSKIKDNRVHCCLYFISPTGH-GLKPLDIEFMKKLS----KKVNLIPVIAKADTLTKDELNQFKKRIR 184 (366)
T ss_pred HHHHHhhhccCCcccccCCceEEEEEEeCCCCC-CCcHhhHHHHHHHh----ccccccceeeccccCCHHHHHHHHHHHH
Confidence 11112233 57889999887742 222221 2222232 456688888899975432 33344556
Q ss_pred HHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHhh
Q 030225 122 LYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEV 156 (181)
Q Consensus 122 ~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~ 156 (181)
+.+..++++++....-.. ++.+-...+.+...
T Consensus 185 ~~i~~~nI~vf~fp~~~~---d~~~~~~~~~l~~~ 216 (366)
T KOG2655|consen 185 QDIEEHNIKVFDFPTDES---DEELKEEEQDLKSS 216 (366)
T ss_pred HHHHHcCcceecCCCCcc---hhhhHHHHHHHhhc
Confidence 667777888776655443 33343334444443
No 345
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.54 E-value=1.3e-07 Score=62.40 Aligned_cols=47 Identities=23% Similarity=0.264 Sum_probs=34.1
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCh
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 51 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~ 51 (181)
||+|||||+|+|.+..... .....|.+.....+.+++ .+.+|||||-
T Consensus 92 ~~vGKstlin~l~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~i~DtpG~ 138 (141)
T cd01857 92 PNVGKSSLINALVGKKKVS-VSATPGKTKHFQTIFLTP---TITLCDCPGL 138 (141)
T ss_pred CCCCHHHHHHHHhCCCcee-eCCCCCcccceEEEEeCC---CEEEEECCCc
Confidence 7999999999999877543 334455555555666654 4679999994
No 346
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.53 E-value=6.6e-08 Score=69.18 Aligned_cols=143 Identities=17% Similarity=0.144 Sum_probs=79.3
Q ss_pred CCCchhHHHHHHhhCCCCCcccc-ceeeeEEEEEEEECCeEEEEEEEeCCC----------hhhhhccchhhccCCcE--
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQES-TIGAAFFTQVLSLNEVTIKFDIWDTAG----------QERYHSLAPMYYRGAAA-- 67 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~~~~~~~~~~~~d~-- 67 (181)
+|+|||+|||.+........... ..|.+.....+. .+-.+.+.|.|| ...+..+...|+.+-+-
T Consensus 145 SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~---v~~~~~~vDlPG~~~a~y~~~~~~d~~~~t~~Y~leR~nLv 221 (320)
T KOG2486|consen 145 SNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFH---VGKSWYEVDLPGYGRAGYGFELPADWDKFTKSYLLERENLV 221 (320)
T ss_pred CcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeee---ccceEEEEecCCcccccCCccCcchHhHhHHHHHHhhhhhh
Confidence 68999999999987554332222 455443333333 334678999999 12344445555544332
Q ss_pred -EEEEEECCChhHHHHHHH-HHHHHHHhCCCCceEEEEEeCCCCccc------ccCCHHHH--HHHHH---HcCCeEEEE
Q 030225 68 -AVVVYDITSMDSFERAKK-WVQELQRQGNPNLIMFLVANKVDLEEK------RKVKNEEG--ELYAQ---ENGLSFLET 134 (181)
Q Consensus 68 -~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~p~ivi~nK~D~~~~------~~~~~~~~--~~~~~---~~~~~~~~~ 134 (181)
+++++|++-+ +.-... ..+.+ . ..++|+.+|.||+|.... ++...... ..+.+ ....+.+.+
T Consensus 222 ~~FLLvd~sv~--i~~~D~~~i~~~-g--e~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~~f~~~~Pw~~~ 296 (320)
T KOG2486|consen 222 RVFLLVDASVP--IQPTDNPEIAWL-G--ENNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIRGVFLVDLPWIYV 296 (320)
T ss_pred eeeeeeeccCC--CCCCChHHHHHH-h--hcCCCeEEeeehhhhhhhccccccCccccceeehhhccccceeccCCceee
Confidence 3334454422 111111 11222 2 258999999999997421 11111111 11111 123467789
Q ss_pred ecCCCCCHHHHHHHHHH
Q 030225 135 SAKSAHNVNELFYEIAK 151 (181)
Q Consensus 135 Sa~~~~gi~~~~~~l~~ 151 (181)
|+.++.|+.+++-.+.+
T Consensus 297 Ssvt~~Grd~Ll~~i~q 313 (320)
T KOG2486|consen 297 SSVTSLGRDLLLLHIAQ 313 (320)
T ss_pred ecccccCceeeeeehhh
Confidence 99999999998776654
No 347
>PRK01889 GTPase RsgA; Reviewed
Probab=98.52 E-value=5.4e-07 Score=68.36 Aligned_cols=83 Identities=16% Similarity=0.155 Sum_probs=57.9
Q ss_pred ccCCcEEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHH-HcCCeEEEEecCCCC
Q 030225 62 YRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQ-ENGLSFLETSAKSAH 140 (181)
Q Consensus 62 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~ 140 (181)
..++|.+++|+++..+-....+.+++..+... +.|.++|+||+|+.+..+ +....+.. ..+.+++.+|++++.
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~~---~i~piIVLNK~DL~~~~~---~~~~~~~~~~~g~~Vi~vSa~~g~ 183 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWES---GAEPVIVLTKADLCEDAE---EKIAEVEALAPGVPVLAVSALDGE 183 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHHc---CCCEEEEEEChhcCCCHH---HHHHHHHHhCCCCcEEEEECCCCc
Confidence 57899999999996433344566666665444 456788999999964311 11122211 346789999999999
Q ss_pred CHHHHHHHHH
Q 030225 141 NVNELFYEIA 150 (181)
Q Consensus 141 gi~~~~~~l~ 150 (181)
|++++..+|.
T Consensus 184 gl~~L~~~L~ 193 (356)
T PRK01889 184 GLDVLAAWLS 193 (356)
T ss_pred cHHHHHHHhh
Confidence 9999999884
No 348
>PRK13796 GTPase YqeH; Provisional
Probab=98.51 E-value=9.9e-07 Score=67.19 Aligned_cols=92 Identities=30% Similarity=0.380 Sum_probs=60.2
Q ss_pred hhhccchhhccCCc-EEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHH----HHHHc
Q 030225 53 RYHSLAPMYYRGAA-AAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGEL----YAQEN 127 (181)
Q Consensus 53 ~~~~~~~~~~~~~d-~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~----~~~~~ 127 (181)
.|....... ...+ ++++|+|+.|... .|...+.+.. .+.|+++|+||+|+.. .....++... +++..
T Consensus 58 ~~~~~l~~i-~~~~~lIv~VVD~~D~~~-----s~~~~L~~~~-~~kpviLViNK~DLl~-~~~~~~~i~~~l~~~~k~~ 129 (365)
T PRK13796 58 DFLKLLNGI-GDSDALVVNVVDIFDFNG-----SWIPGLHRFV-GNNPVLLVGNKADLLP-KSVKKNKVKNWLRQEAKEL 129 (365)
T ss_pred HHHHHHHhh-cccCcEEEEEEECccCCC-----chhHHHHHHh-CCCCEEEEEEchhhCC-CccCHHHHHHHHHHHHHhc
Confidence 344443333 4444 9999999987431 2334444332 3678999999999954 2222333333 34555
Q ss_pred CC---eEEEEecCCCCCHHHHHHHHHHH
Q 030225 128 GL---SFLETSAKSAHNVNELFYEIAKR 152 (181)
Q Consensus 128 ~~---~~~~~Sa~~~~gi~~~~~~l~~~ 152 (181)
++ .++.+||+++.|++++++.|.+.
T Consensus 130 g~~~~~v~~vSAk~g~gI~eL~~~I~~~ 157 (365)
T PRK13796 130 GLRPVDVVLISAQKGHGIDELLEAIEKY 157 (365)
T ss_pred CCCcCcEEEEECCCCCCHHHHHHHHHHh
Confidence 65 58999999999999999999764
No 349
>KOG4273 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.47 E-value=2.6e-06 Score=60.44 Aligned_cols=147 Identities=17% Similarity=0.229 Sum_probs=89.6
Q ss_pred chhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHHHHH
Q 030225 4 GKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERA 83 (181)
Q Consensus 4 GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~ 83 (181)
||.+|+.+|....+.....+.-.+.+..+++.-.+....+.+-=.+-.+++.-.........-+++.|||++....+..+
T Consensus 18 g~~~ll~rl~s~dfed~ses~~~te~hgwtid~kyysadi~lcishicde~~lpn~~~a~pl~a~vmvfdlse~s~l~al 97 (418)
T KOG4273|consen 18 GDQLLLHRLGSEDFEDESESNDATEFHGWTIDNKYYSADINLCISHICDEKFLPNAEIAEPLQAFVMVFDLSEKSGLDAL 97 (418)
T ss_pred chHHHHHHhcchhheeeccccCceeeeceEecceeeecceeEEeecccchhccCCcccccceeeEEEEEeccchhhhHHH
Confidence 99999999998877665555555555556554443333333332332232222222233445688999999999999999
Q ss_pred HHHHHHHHHhCCCCceEEEEEeCCCCccc--------------c----------------------------c--CCHHH
Q 030225 84 KKWVQELQRQGNPNLIMFLVANKVDLEEK--------------R----------------------------K--VKNEE 119 (181)
Q Consensus 84 ~~~~~~~~~~~~~~~p~ivi~nK~D~~~~--------------~----------------------------~--~~~~~ 119 (181)
+.|+....-.. --..+.|+||.|.... . . .....
T Consensus 98 qdwl~htdins--fdillcignkvdrvphhlahdeyrrrl~kasdpsrdl~~di~dfgisetegssllgsedasldirga 175 (418)
T KOG4273|consen 98 QDWLPHTDINS--FDILLCIGNKVDRVPHHLAHDEYRRRLAKASDPSRDLMIDICDFGISETEGSSLLGSEDASLDIRGA 175 (418)
T ss_pred Hhhcccccccc--chhheecccccccccchhhhhHHHHHHHhhcCcchhHhhhhhhccccccccccccccccchhhHHHH
Confidence 99976542221 1124556899885210 0 0 11223
Q ss_pred HHHHHHHcCCeEEEEecCCC------------CCHHHHHHHHHHH
Q 030225 120 GELYAQENGLSFLETSAKSA------------HNVNELFYEIAKR 152 (181)
Q Consensus 120 ~~~~~~~~~~~~~~~Sa~~~------------~gi~~~~~~l~~~ 152 (181)
...|+.++++.+++.+|.+. .|++.+|..|-..
T Consensus 176 ~lewc~e~~~efieacasn~dfd~c~~~dgdsqgverifgal~ah 220 (418)
T KOG4273|consen 176 ALEWCLEHGFEFIEACASNEDFDECDDDDGDSQGVERIFGALNAH 220 (418)
T ss_pred HHHHHHhcCceeeeecCCccccchhhccCcchhhHHHHHHHhhhc
Confidence 46788889999999998543 3677777766443
No 350
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=98.46 E-value=4.8e-07 Score=72.68 Aligned_cols=103 Identities=24% Similarity=0.193 Sum_probs=69.8
Q ss_pred CchhHHHHHHhhCCCCC--------------ccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEE
Q 030225 3 TGKTSLVLRFVKGQFFD--------------FQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA 68 (181)
Q Consensus 3 ~GKttLl~~l~~~~~~~--------------~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 68 (181)
=|||||...|+..+... ....+-|++...-.+..-.+.+.++++|+|||.+|........+=+|++
T Consensus 20 hgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf~sevssas~l~d~a 99 (887)
T KOG0467|consen 20 HGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFSSEVSSASRLSDGA 99 (887)
T ss_pred CCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccchhhhhhhhhhhcCCc
Confidence 39999999998654421 1112335555555556666778999999999999999988888889999
Q ss_pred EEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCC
Q 030225 69 VVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDL 109 (181)
Q Consensus 69 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~ 109 (181)
++++|+..+--.+...-..+... .+...++++||+|.
T Consensus 100 lvlvdvvegv~~qt~~vlrq~~~----~~~~~~lvinkidr 136 (887)
T KOG0467|consen 100 LVLVDVVEGVCSQTYAVLRQAWI----EGLKPILVINKIDR 136 (887)
T ss_pred EEEEeeccccchhHHHHHHHHHH----ccCceEEEEehhhh
Confidence 99999986432222111111121 23457788999993
No 351
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.42 E-value=1.2e-06 Score=65.32 Aligned_cols=113 Identities=16% Similarity=0.245 Sum_probs=72.9
Q ss_pred CCchhHHHHHHhhCCCCCccc-cceeeeEEEEEEEEC------Ce---------------------------------EE
Q 030225 2 GTGKTSLVLRFVKGQFFDFQE-STIGAAFFTQVLSLN------EV---------------------------------TI 41 (181)
Q Consensus 2 ~~GKttLl~~l~~~~~~~~~~-~t~~~~~~~~~~~~~------~~---------------------------------~~ 41 (181)
..||||+|+-|+.+.++.... |..++++....+.-+ |. --
T Consensus 68 StGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf~csqmp~~vLe 147 (532)
T KOG1954|consen 68 STGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRFMCSQLPNQVLE 147 (532)
T ss_pred ccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHHHHhcCChhhhh
Confidence 369999999999988875433 222334433333221 10 02
Q ss_pred EEEEEeCCChh-----------hhhccchhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCc
Q 030225 42 KFDIWDTAGQE-----------RYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLE 110 (181)
Q Consensus 42 ~~~i~D~~G~~-----------~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~ 110 (181)
.+.|+||||-- .|.....-|...+|.+|++||+.-.+.-++..+.+..++.+ .-.+=||+||.|+.
T Consensus 148 ~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~---EdkiRVVLNKADqV 224 (532)
T KOG1954|consen 148 SVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGH---EDKIRVVLNKADQV 224 (532)
T ss_pred heeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCC---cceeEEEecccccc
Confidence 58899999931 23334556788999999999988766656666666666554 33466778999987
Q ss_pred ccccCCH
Q 030225 111 EKRKVKN 117 (181)
Q Consensus 111 ~~~~~~~ 117 (181)
+..++..
T Consensus 225 dtqqLmR 231 (532)
T KOG1954|consen 225 DTQQLMR 231 (532)
T ss_pred CHHHHHH
Confidence 6555433
No 352
>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]
Probab=98.34 E-value=6.2e-06 Score=58.87 Aligned_cols=122 Identities=14% Similarity=0.202 Sum_probs=79.4
Q ss_pred ECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCCh----------hHHHHHHHHHHHHHHh-CCCCceEEEEE
Q 030225 36 LNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSM----------DSFERAKKWVQELQRQ-GNPNLIMFLVA 104 (181)
Q Consensus 36 ~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~-~~~~~p~ivi~ 104 (181)
+.-..+.|..+|.+|+...+.-|-..|.+..++|||...+.- ..+.+...++..+=.. -.....+++.+
T Consensus 197 FqVdkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFL 276 (379)
T KOG0099|consen 197 FQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFL 276 (379)
T ss_pred EeccccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEe
Confidence 333445688999999999999999999999999999998751 1222322222222111 11345688889
Q ss_pred eCCCCccc------------------------------ccCCHHHHHHHHHH-------------cCCeEEEEecCCCCC
Q 030225 105 NKVDLEEK------------------------------RKVKNEEGELYAQE-------------NGLSFLETSAKSAHN 141 (181)
Q Consensus 105 nK~D~~~~------------------------------~~~~~~~~~~~~~~-------------~~~~~~~~Sa~~~~g 141 (181)
||.|+... +......+..++++ +-+.+..+.|.+.++
T Consensus 277 NKqDllaeKi~Agk~~i~dyFpEf~~y~~p~da~~es~~d~~v~raK~fird~FlRiSta~~Dg~h~CYpHFTcAvDTen 356 (379)
T KOG0099|consen 277 NKQDLLAEKILAGKSKIEDYFPEFARYTTPEDATPESGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTEN 356 (379)
T ss_pred cHHHHHHHHHHcchhhHHHhChHHhccCCccccCCCCCCChhhHHHHHhhhhhHhhhccccCCCceecccceeEeechHH
Confidence 99997210 01111112222222 124567889999999
Q ss_pred HHHHHHHHHHHHHhhC
Q 030225 142 VNELFYEIAKRLAEVN 157 (181)
Q Consensus 142 i~~~~~~l~~~~~~~~ 157 (181)
|..+|+.....+++.+
T Consensus 357 IrrVFnDcrdiIqr~h 372 (379)
T KOG0099|consen 357 IRRVFNDCRDIIQRMH 372 (379)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999988887765
No 353
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.26 E-value=1.4e-06 Score=65.27 Aligned_cols=48 Identities=21% Similarity=0.228 Sum_probs=38.3
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChh
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 52 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 52 (181)
||||||||+|+|.+.... ...+..|++.....+..+.. +.++||||-.
T Consensus 141 PNVGKSslIN~L~~k~~~-~~s~~PG~Tk~~q~i~~~~~---i~LlDtPGii 188 (322)
T COG1161 141 PNVGKSTLINRLLGKKVA-KTSNRPGTTKGIQWIKLDDG---IYLLDTPGII 188 (322)
T ss_pred CCCcHHHHHHHHhcccce-eeCCCCceecceEEEEcCCC---eEEecCCCcC
Confidence 899999999999987763 34466688887777777765 6799999954
No 354
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=98.23 E-value=8.6e-06 Score=61.18 Aligned_cols=106 Identities=14% Similarity=0.092 Sum_probs=65.3
Q ss_pred EEEEEeCCChhhhhcc--chhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccc-----
Q 030225 42 KFDIWDTAGQERYHSL--APMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRK----- 114 (181)
Q Consensus 42 ~~~i~D~~G~~~~~~~--~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~----- 114 (181)
-+.|+|+.||+.|-.. .-.+-+..|-.++++.++|.-+.. .++.+-.+. .-..|++++.+|+|+.....
T Consensus 202 lVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~-tkEHLgi~~---a~~lPviVvvTK~D~~~ddr~~~v~ 277 (527)
T COG5258 202 LVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKM-TKEHLGIAL---AMELPVIVVVTKIDMVPDDRFQGVV 277 (527)
T ss_pred EEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchh-hhHhhhhhh---hhcCCEEEEEEecccCcHHHHHHHH
Confidence 4789999999977543 333446789999999988754322 122222222 24789999999999853210
Q ss_pred -------------------CCHHHHHHHHHHcC---CeEEEEecCCCCCHHHHHHHHHH
Q 030225 115 -------------------VKNEEGELYAQENG---LSFLETSAKSAHNVNELFYEIAK 151 (181)
Q Consensus 115 -------------------~~~~~~~~~~~~~~---~~~~~~Sa~~~~gi~~~~~~l~~ 151 (181)
.........+-+.+ .|+|.+|+.+|+|++-+.+.+..
T Consensus 278 ~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f~~ 336 (527)
T COG5258 278 EEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFFLL 336 (527)
T ss_pred HHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHHHh
Confidence 00000011122222 58999999999999766655543
No 355
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.19 E-value=4.2e-06 Score=61.79 Aligned_cols=48 Identities=21% Similarity=0.284 Sum_probs=34.2
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChh
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 52 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 52 (181)
||||||||+|+|.+...... .+..|++.....+..+. .+.++||||-.
T Consensus 130 pnvGKSsliN~l~~~~~~~~-~~~~g~T~~~~~~~~~~---~~~l~DtPGi~ 177 (287)
T PRK09563 130 PNVGKSTLINRLAGKKIAKT-GNRPGVTKAQQWIKLGK---GLELLDTPGIL 177 (287)
T ss_pred CCCCHHHHHHHHhcCCcccc-CCCCCeEEEEEEEEeCC---cEEEEECCCcC
Confidence 89999999999998765332 34556666555555543 46799999963
No 356
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.19 E-value=3.3e-06 Score=62.02 Aligned_cols=47 Identities=21% Similarity=0.314 Sum_probs=33.3
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCh
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 51 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~ 51 (181)
||||||||+|+|.+...... .+..|++.....+.++. .+.++||||-
T Consensus 127 ~nvGKSslin~l~~~~~~~~-~~~~g~T~~~~~~~~~~---~~~l~DtPG~ 173 (276)
T TIGR03596 127 PNVGKSTLINRLAGKKVAKV-GNRPGVTKGQQWIKLSD---GLELLDTPGI 173 (276)
T ss_pred CCCCHHHHHHHHhCCCcccc-CCCCCeecceEEEEeCC---CEEEEECCCc
Confidence 79999999999997664332 24455555555555543 4679999997
No 357
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.15 E-value=6.9e-05 Score=53.03 Aligned_cols=134 Identities=17% Similarity=0.191 Sum_probs=73.8
Q ss_pred CCCchhHHHHHHhhCCCCC---------ccccceeeeEEEEEEEECCeEEEEEEEeCCChhh------------------
Q 030225 1 MGTGKTSLVLRFVKGQFFD---------FQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER------------------ 53 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~---------~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~------------------ 53 (181)
+|.|||||+|.|+...... -+..|+........+.=++...++.++||||--.
T Consensus 55 SglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncWePI~kyIneQ 134 (336)
T KOG1547|consen 55 SGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCWEPIEKYINEQ 134 (336)
T ss_pred CCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchhHHHHHHHHHH
Confidence 6899999999998643322 1223444445555566678888999999999211
Q ss_pred hh--------ccchhhccC--CcEEEEEEECCChhHHHHH-HHHHHHHHHhCCCCceEEEEEeCCCCcc--cccCCHHHH
Q 030225 54 YH--------SLAPMYYRG--AAAAVVVYDITSMDSFERA-KKWVQELQRQGNPNLIMFLVANKVDLEE--KRKVKNEEG 120 (181)
Q Consensus 54 ~~--------~~~~~~~~~--~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivi~nK~D~~~--~~~~~~~~~ 120 (181)
|. ......+.+ ++.++|.+..+. .++.-+ ...++.+.+. +.++-|+-|+|... .+....+..
T Consensus 135 ye~yL~eElni~R~kripDTRVHcclyFi~ptG-hsLrplDieflkrLt~v----vNvvPVIakaDtlTleEr~~FkqrI 209 (336)
T KOG1547|consen 135 YEQYLREELNIAREKRIPDTRVHCCLYFIPPTG-HSLRPLDIEFLKRLTEV----VNVVPVIAKADTLTLEERSAFKQRI 209 (336)
T ss_pred HHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCC-CccCcccHHHHHHHhhh----heeeeeEeecccccHHHHHHHHHHH
Confidence 11 111222333 566777777663 232222 1233334332 34666777999532 233333344
Q ss_pred HHHHHHcCCeEEEEecCCC
Q 030225 121 ELYAQENGLSFLETSAKSA 139 (181)
Q Consensus 121 ~~~~~~~~~~~~~~Sa~~~ 139 (181)
++-...+++.++.--+.+.
T Consensus 210 ~~el~~~~i~vYPq~~fde 228 (336)
T KOG1547|consen 210 RKELEKHGIDVYPQDSFDE 228 (336)
T ss_pred HHHHHhcCccccccccccc
Confidence 4455567777665544443
No 358
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=4.2e-05 Score=61.28 Aligned_cols=93 Identities=17% Similarity=0.203 Sum_probs=56.7
Q ss_pred EEEEEeCCChh---hhhccchhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHH
Q 030225 42 KFDIWDTAGQE---RYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNE 118 (181)
Q Consensus 42 ~~~i~D~~G~~---~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~ 118 (181)
.+.++|.||.+ ....-...+..++|++|||..+.+.-...+ ..++..+.+ .++.++|+.||.|.....+...+
T Consensus 207 DivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~se-k~Ff~~vs~---~KpniFIlnnkwDasase~ec~e 282 (749)
T KOG0448|consen 207 DIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSE-KQFFHKVSE---EKPNIFILNNKWDASASEPECKE 282 (749)
T ss_pred cceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHH-HHHHHHhhc---cCCcEEEEechhhhhcccHHHHH
Confidence 36788999953 334445677889999999999876444333 222333322 24457777889998665554444
Q ss_pred HHHHHHHHcCC--------eEEEEecCC
Q 030225 119 EGELYAQENGL--------SFLETSAKS 138 (181)
Q Consensus 119 ~~~~~~~~~~~--------~~~~~Sa~~ 138 (181)
....-+.+... .+|.|||+.
T Consensus 283 ~V~~Qi~eL~v~~~~eA~DrvfFVS~~e 310 (749)
T KOG0448|consen 283 DVLKQIHELSVVTEKEAADRVFFVSAKE 310 (749)
T ss_pred HHHHHHHhcCcccHhhhcCeeEEEeccc
Confidence 44443444432 478888654
No 359
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.14 E-value=2.4e-05 Score=67.93 Aligned_cols=106 Identities=21% Similarity=0.190 Sum_probs=63.0
Q ss_pred CCCchhHHHHHHhhCCCCCcc------ccceeeeEEEEEEEECCeEEEEEEEeCCChh--------hhhccchhhc----
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQ------ESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE--------RYHSLAPMYY---- 62 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~------~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~--------~~~~~~~~~~---- 62 (181)
||+||||||++- +..++-.. ...++.+. .....+.+. -.++|++|.- .....|..++
T Consensus 120 ~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~-~c~wwf~~~---avliDtaG~y~~~~~~~~~~~~~W~~fL~~L~ 194 (1169)
T TIGR03348 120 PGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTR-NCDWWFTDE---AVLIDTAGRYTTQDSDPEEDAAAWLGFLGLLR 194 (1169)
T ss_pred CCCchhHHHHhC-CCCCcCchhhccccccCCCCCc-ccceEecCC---EEEEcCCCccccCCCcccccHHHHHHHHHHHH
Confidence 799999999876 33332211 01112111 122223333 3599999931 1223344443
Q ss_pred -----cCCcEEEEEEECCChh-----H----HHHHHHHHHHHHHhCCCCceEEEEEeCCCCcc
Q 030225 63 -----RGAAAAVVVYDITSMD-----S----FERAKKWVQELQRQGNPNLIMFLVANKVDLEE 111 (181)
Q Consensus 63 -----~~~d~~i~v~d~~~~~-----s----~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~ 111 (181)
+..+++|+++|+.+.- . -..++..++++.+......|+.+++||+|+..
T Consensus 195 k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll~ 257 (1169)
T TIGR03348 195 KHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLA 257 (1169)
T ss_pred HhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhhc
Confidence 4589999999987531 1 12345555666666567899999999999864
No 360
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.13 E-value=3e-05 Score=56.79 Aligned_cols=93 Identities=19% Similarity=0.172 Sum_probs=66.9
Q ss_pred cchhhccCCcEEEEEEECCChhH-HHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEe
Q 030225 57 LAPMYYRGAAAAVVVYDITSMDS-FERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETS 135 (181)
Q Consensus 57 ~~~~~~~~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S 135 (181)
+.+.-..+.|-+++|+.+.+|+- ...+.+++-.... .+...+|++||+|+.+..+...++........+.+++.+|
T Consensus 72 L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~---~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~~s 148 (301)
T COG1162 72 LIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEA---GGIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLFVS 148 (301)
T ss_pred eeCCcccccceEEEEEeccCCCCCHHHHHHHHHHHHH---cCCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEEEec
Confidence 34444566888888888888764 4445665554433 3556777799999976444333445666777899999999
Q ss_pred cCCCCCHHHHHHHHHHH
Q 030225 136 AKSAHNVNELFYEIAKR 152 (181)
Q Consensus 136 a~~~~gi~~~~~~l~~~ 152 (181)
+++++|++++.+++...
T Consensus 149 ~~~~~~~~~l~~~l~~~ 165 (301)
T COG1162 149 AKNGDGLEELAELLAGK 165 (301)
T ss_pred CcCcccHHHHHHHhcCC
Confidence 99999999999988654
No 361
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.06 E-value=3.8e-06 Score=56.27 Aligned_cols=51 Identities=20% Similarity=0.227 Sum_probs=27.2
Q ss_pred CCCchhHHHHHHhhCCCC------CccccceeeeEEEEEEEECCeEEEEEEEeCCChhhh
Q 030225 1 MGTGKTSLVLRFVKGQFF------DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERY 54 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~------~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~ 54 (181)
||||||||+|.|.+.... ......--++.....+..+.+. .++||||-..+
T Consensus 44 SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g~---~iIDTPGf~~~ 100 (161)
T PF03193_consen 44 SGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDGG---YIIDTPGFRSF 100 (161)
T ss_dssp TTSSHHHHHHHHHTSS----S--------------SEEEEEETTSE---EEECSHHHHT-
T ss_pred CCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCCc---EEEECCCCCcc
Confidence 699999999999986321 1111111223334445554443 49999996543
No 362
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.06 E-value=1.3e-05 Score=60.72 Aligned_cols=75 Identities=13% Similarity=-0.047 Sum_probs=45.8
Q ss_pred CCCchhHHHHHHhhCCC-CCccccceeeeEEEEEEEECC---------------eEEEEEEEeCCChhhh----hccc--
Q 030225 1 MGTGKTSLVLRFVKGQF-FDFQESTIGAAFFTQVLSLNE---------------VTIKFDIWDTAGQERY----HSLA-- 58 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~---------------~~~~~~i~D~~G~~~~----~~~~-- 58 (181)
||+|||||++.|.+... ....-|..+.+...-.+.+.+ ....+.+.|+||...- ..+.
T Consensus 11 Pn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs~g~Glgn~ 90 (368)
T TIGR00092 11 PNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGASKGEGLGNQ 90 (368)
T ss_pred CCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchhcccCcchH
Confidence 89999999999998765 322212221222222223322 2246789999996421 1222
Q ss_pred -hhhccCCcEEEEEEECC
Q 030225 59 -PMYYRGAAAAVVVYDIT 75 (181)
Q Consensus 59 -~~~~~~~d~~i~v~d~~ 75 (181)
-..++++|+++.|+++.
T Consensus 91 fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 91 FLANIREVDIIQHVVRCF 108 (368)
T ss_pred HHHHHHhCCEEEEEEeCC
Confidence 23468899999999985
No 363
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=98.06 E-value=2.3e-05 Score=42.69 Aligned_cols=43 Identities=28% Similarity=0.309 Sum_probs=30.4
Q ss_pred CcEEEEEEECCC--hhHHHHHHHHHHHHHHhCCCCceEEEEEeCCC
Q 030225 65 AAAAVVVYDITS--MDSFERAKKWVQELQRQGNPNLIMFLVANKVD 108 (181)
Q Consensus 65 ~d~~i~v~d~~~--~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D 108 (181)
.++++|++|++. +.+.++...+++.++... .++|+++|.||+|
T Consensus 14 ~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F-~~~P~i~V~nK~D 58 (58)
T PF06858_consen 14 ADAILFIIDPSEQCGYSIEEQLSLFKEIKPLF-PNKPVIVVLNKID 58 (58)
T ss_dssp -SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHT-TTS-EEEEE--TT
T ss_pred cceEEEEEcCCCCCCCCHHHHHHHHHHHHHHc-CCCCEEEEEeccC
Confidence 689999999996 456777888888888874 5899999999998
No 364
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.06 E-value=5.6e-05 Score=53.85 Aligned_cols=76 Identities=13% Similarity=0.110 Sum_probs=44.3
Q ss_pred CCCchhHHHHHHhhC--CCCCcc---ccceeeeEEEEEEEEC-CeEEEEEEEeCCChhhhhc------cchhhccC--Cc
Q 030225 1 MGTGKTSLVLRFVKG--QFFDFQ---ESTIGAAFFTQVLSLN-EVTIKFDIWDTAGQERYHS------LAPMYYRG--AA 66 (181)
Q Consensus 1 ~~~GKttLl~~l~~~--~~~~~~---~~t~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~------~~~~~~~~--~d 66 (181)
+++|||+|+|.|++. .+.... .-|.| +..+..... +....+.++||+|...... .....+.. ++
T Consensus 16 ~~sGKS~llN~l~~~~~~f~~~~~~~~~T~g--i~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~~~l~~llss 93 (224)
T cd01851 16 QSSGKSFLLNHLFGTLSGFDVMDTSQQTTKG--IWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARLFALATLLSS 93 (224)
T ss_pred CCCCHHHHHHHHhCCCCCeEecCCCCCCccc--eEEEeccccCCCcceEEEEecCCcCccccCchhhhhHHHHHHHHHhC
Confidence 689999999999988 553221 11222 222222221 2346899999999643221 12233334 78
Q ss_pred EEEEEEECCChh
Q 030225 67 AAVVVYDITSMD 78 (181)
Q Consensus 67 ~~i~v~d~~~~~ 78 (181)
++||..+.....
T Consensus 94 ~~i~n~~~~~~~ 105 (224)
T cd01851 94 VLIYNSWETILG 105 (224)
T ss_pred EEEEeccCcccH
Confidence 888887766433
No 365
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.05 E-value=1.6e-05 Score=59.63 Aligned_cols=104 Identities=17% Similarity=0.211 Sum_probs=65.1
Q ss_pred EEEEEeCCChhhhhccchhhcc--CCcEEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccc-----
Q 030225 42 KFDIWDTAGQERYHSLAPMYYR--GAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRK----- 114 (181)
Q Consensus 42 ~~~i~D~~G~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~----- 114 (181)
-+.++|.+|+..|....-.-+. -.|..++|+++...-.+. .++.+-.+.. .+.|++++.+|+|+.+...
T Consensus 250 lvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~t-TrEHLgl~~A---L~iPfFvlvtK~Dl~~~~~~~~tv 325 (591)
T KOG1143|consen 250 LVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWT-TREHLGLIAA---LNIPFFVLVTKMDLVDRQGLKKTV 325 (591)
T ss_pred eEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccc-cHHHHHHHHH---hCCCeEEEEEeeccccchhHHHHH
Confidence 4789999999988665433333 257788888877544332 2334444433 4789999999999854211
Q ss_pred -------------------CCHHHHHHHHHH----cCCeEEEEecCCCCCHHHHHHHH
Q 030225 115 -------------------VKNEEGELYAQE----NGLSFLETSAKSAHNVNELFYEI 149 (181)
Q Consensus 115 -------------------~~~~~~~~~~~~----~~~~~~~~Sa~~~~gi~~~~~~l 149 (181)
-..+++...+++ .-.|+|.+|+.+|+|++-+...|
T Consensus 326 ~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~fL 383 (591)
T KOG1143|consen 326 KDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRTFL 383 (591)
T ss_pred HHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHHHH
Confidence 112222222222 22589999999999987655444
No 366
>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]
Probab=98.02 E-value=8.9e-06 Score=57.13 Aligned_cols=127 Identities=16% Similarity=0.189 Sum_probs=89.2
Q ss_pred EEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCC----------hhHHHHHHHHHHHHHHhC-CCCce
Q 030225 31 TQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITS----------MDSFERAKKWVQELQRQG-NPNLI 99 (181)
Q Consensus 31 ~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~-~~~~p 99 (181)
..++.++-.++-|.+.|.+|+...+.-|-++|.+...++|++.++. ...+++..-++..+..+- -.+.+
T Consensus 189 i~eypfdl~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~nss 268 (359)
T KOG0085|consen 189 IIEYPFDLQKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSS 268 (359)
T ss_pred ceecCcchhhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccCCc
Confidence 3445566677788999999999888889999999988888776653 334445555555555531 25788
Q ss_pred EEEEEeCCCCccc----------------ccCCHHHHHHHHHHc----C------CeEEEEecCCCCCHHHHHHHHHHHH
Q 030225 100 MFLVANKVDLEEK----------------RKVKNEEGELYAQEN----G------LSFLETSAKSAHNVNELFYEIAKRL 153 (181)
Q Consensus 100 ~ivi~nK~D~~~~----------------~~~~~~~~~~~~~~~----~------~~~~~~Sa~~~~gi~~~~~~l~~~~ 153 (181)
+++.+||.|+.+. ...+.+.+.+|+.+. + +.-..+.|.+.+||.-+|..+...+
T Consensus 269 VIlFLNKkDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDti 348 (359)
T KOG0085|consen 269 VILFLNKKDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDTI 348 (359)
T ss_pred eEEEechhhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHHH
Confidence 9999999998432 223344455555543 1 2336788999999999999998888
Q ss_pred HhhC
Q 030225 154 AEVN 157 (181)
Q Consensus 154 ~~~~ 157 (181)
.+..
T Consensus 349 Lq~~ 352 (359)
T KOG0085|consen 349 LQLN 352 (359)
T ss_pred HHhh
Confidence 7753
No 367
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=98.00 E-value=0.00024 Score=53.17 Aligned_cols=99 Identities=17% Similarity=0.142 Sum_probs=54.1
Q ss_pred EEEEEEeCCChhhhhccchhhc--------cCCcEEEEEEECCChhH-HHHHHHHHHHHHHhCCCCceEEEEEeCCCCcc
Q 030225 41 IKFDIWDTAGQERYHSLAPMYY--------RGAAAAVVVYDITSMDS-FERAKKWVQELQRQGNPNLIMFLVANKVDLEE 111 (181)
Q Consensus 41 ~~~~i~D~~G~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~ 111 (181)
+...++++.|-..-......++ -..|+++-|+|+.+-.. ...+...+..-... --++++||.|+.+
T Consensus 85 ~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~-----AD~ivlNK~Dlv~ 159 (323)
T COG0523 85 PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAF-----ADVIVLNKTDLVD 159 (323)
T ss_pred CCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHh-----CcEEEEecccCCC
Confidence 4456778877533222222222 23578999999876433 22122222222122 2578899999987
Q ss_pred cccCCHHHHHHHHHHcC--CeEEEEecCCCCCHHHHHH
Q 030225 112 KRKVKNEEGELYAQENG--LSFLETSAKSAHNVNELFY 147 (181)
Q Consensus 112 ~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~~~~ 147 (181)
..+ .+......++.+ ++++.++. ...+..+++.
T Consensus 160 ~~~--l~~l~~~l~~lnp~A~i~~~~~-~~~~~~~ll~ 194 (323)
T COG0523 160 AEE--LEALEARLRKLNPRARIIETSY-GDVDLAELLD 194 (323)
T ss_pred HHH--HHHHHHHHHHhCCCCeEEEccc-cCCCHHHhhc
Confidence 554 445556666665 56777776 3344444443
No 368
>PRK13796 GTPase YqeH; Provisional
Probab=97.99 E-value=8.3e-06 Score=62.22 Aligned_cols=49 Identities=20% Similarity=0.224 Sum_probs=33.6
Q ss_pred CCCchhHHHHHHhhCCC----CCccccceeeeEEEEEEEECCeEEEEEEEeCCChh
Q 030225 1 MGTGKTSLVLRFVKGQF----FDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 52 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~----~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 52 (181)
||||||||+|+|+.... .....+..|++.....+.++++ ..++||||-.
T Consensus 169 ~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~---~~l~DTPGi~ 221 (365)
T PRK13796 169 TNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDG---SFLYDTPGII 221 (365)
T ss_pred CCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCC---cEEEECCCcc
Confidence 79999999999986431 1123344566666666666554 3699999964
No 369
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=97.96 E-value=3.6e-05 Score=51.77 Aligned_cols=64 Identities=13% Similarity=0.096 Sum_probs=35.6
Q ss_pred EEEEEEEeCCChhhhhccchh--------hccCCcEEEEEEECCChhHH-HHHHHHHHHHHHhCCCCceEEEEEeCCCC
Q 030225 40 TIKFDIWDTAGQERYHSLAPM--------YYRGAAAAVVVYDITSMDSF-ERAKKWVQELQRQGNPNLIMFLVANKVDL 109 (181)
Q Consensus 40 ~~~~~i~D~~G~~~~~~~~~~--------~~~~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~p~ivi~nK~D~ 109 (181)
.....++|++|...-...... ..-..|.+++++|+...... .....+..++... -++++||+|+
T Consensus 86 ~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~a------d~ivlnk~dl 158 (158)
T cd03112 86 AFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAFA------DRILLNKTDL 158 (158)
T ss_pred CCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHHC------CEEEEecccC
Confidence 356789999996432222211 23357899999997643321 1112222333222 4668899985
No 370
>PRK12288 GTPase RsgA; Reviewed
Probab=97.94 E-value=1.6e-05 Score=60.18 Aligned_cols=51 Identities=18% Similarity=0.231 Sum_probs=29.8
Q ss_pred CCCchhHHHHHHhhCCCCCc-ccc-----ceeeeEEEEEEEECCeEEEEEEEeCCChhhh
Q 030225 1 MGTGKTSLVLRFVKGQFFDF-QES-----TIGAAFFTQVLSLNEVTIKFDIWDTAGQERY 54 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~-~~~-----t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~ 54 (181)
||||||||+|+|++.....+ ..+ .--++.....+.+.++. .++||||-..+
T Consensus 214 sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~~---~liDTPGir~~ 270 (347)
T PRK12288 214 SGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHGG---DLIDSPGVREF 270 (347)
T ss_pred CCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCCC---EEEECCCCCcc
Confidence 79999999999997543211 111 01123334444554332 39999996543
No 371
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.92 E-value=3.9e-05 Score=50.50 Aligned_cols=65 Identities=20% Similarity=0.182 Sum_probs=45.8
Q ss_pred EEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCC
Q 030225 41 IKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDL 109 (181)
Q Consensus 41 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~ 109 (181)
+.+.++|+|+... ......+..+|.++++.+.+ ..++..+...++.+.... ...++.++.|+.+.
T Consensus 45 yd~VIiD~p~~~~--~~~~~~l~~aD~vviv~~~~-~~s~~~~~~~l~~l~~~~-~~~~~~lVvN~~~~ 109 (139)
T cd02038 45 YDYIIIDTGAGIS--DNVLDFFLAADEVIVVTTPE-PTSITDAYALIKKLAKQL-RVLNFRVVVNRAES 109 (139)
T ss_pred CCEEEEECCCCCC--HHHHHHHHhCCeEEEEcCCC-hhHHHHHHHHHHHHHHhc-CCCCEEEEEeCCCC
Confidence 6789999997542 22346788899999999975 455665555566665442 44567889999874
No 372
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.92 E-value=1.2e-05 Score=58.83 Aligned_cols=51 Identities=18% Similarity=0.158 Sum_probs=31.9
Q ss_pred CCCchhHHHHHHhhCC------CCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhh
Q 030225 1 MGTGKTSLVLRFVKGQ------FFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERY 54 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~------~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~ 54 (181)
||||||||+|+|..+. ........--++.....+.++++. .++||||-.++
T Consensus 173 SGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG---~iiDTPGf~~~ 229 (301)
T COG1162 173 SGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGG---WIIDTPGFRSL 229 (301)
T ss_pred CCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCC---EEEeCCCCCcc
Confidence 7999999999998622 222222222234456666775443 29999996543
No 373
>PRK12289 GTPase RsgA; Reviewed
Probab=97.91 E-value=1.5e-05 Score=60.35 Aligned_cols=48 Identities=23% Similarity=0.302 Sum_probs=29.3
Q ss_pred CCCchhHHHHHHhhCCCCCcccccee-------eeEEEEEEEECCeEEEEEEEeCCChh
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIG-------AAFFTQVLSLNEVTIKFDIWDTAGQE 52 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~-------~~~~~~~~~~~~~~~~~~i~D~~G~~ 52 (181)
||||||||+|+|++....... ...+ ++.....+...++. .++||||-.
T Consensus 181 SgVGKSSLIN~L~~~~~~~t~-~vs~~~~rGrHTT~~~~l~~l~~g~---~liDTPG~~ 235 (352)
T PRK12289 181 SGVGKSSLINRLIPDVELRVG-KVSGKLGRGRHTTRHVELFELPNGG---LLADTPGFN 235 (352)
T ss_pred CCCCHHHHHHHHcCccccccc-cccCCCCCCCCcCceeEEEECCCCc---EEEeCCCcc
Confidence 799999999999965432211 1111 33344445554333 599999954
No 374
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.91 E-value=8.2e-05 Score=55.69 Aligned_cols=97 Identities=16% Similarity=0.110 Sum_probs=56.9
Q ss_pred eEEEEEEEeCCChhhhhcc----chhh--------ccCCcEEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeC
Q 030225 39 VTIKFDIWDTAGQERYHSL----APMY--------YRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANK 106 (181)
Q Consensus 39 ~~~~~~i~D~~G~~~~~~~----~~~~--------~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK 106 (181)
..+.+.++||||....... ...+ -...+..++|.|++... +.+.. .....+. -.+.-+|+||
T Consensus 195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~--~~~~~-a~~f~~~---~~~~giIlTK 268 (318)
T PRK10416 195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ--NALSQ-AKAFHEA---VGLTGIILTK 268 (318)
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh--HHHHH-HHHHHhh---CCCCEEEEEC
Confidence 3467899999996432211 1111 12467889999998532 22221 1222111 1356788999
Q ss_pred CCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHH
Q 030225 107 VDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFY 147 (181)
Q Consensus 107 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~ 147 (181)
.|.... .-.+...+...++|+.+++ +|++++++..
T Consensus 269 lD~t~~----~G~~l~~~~~~~~Pi~~v~--~Gq~~~Dl~~ 303 (318)
T PRK10416 269 LDGTAK----GGVVFAIADELGIPIKFIG--VGEGIDDLQP 303 (318)
T ss_pred CCCCCC----ccHHHHHHHHHCCCEEEEe--CCCChhhCcc
Confidence 995322 1234455566799999998 8888877643
No 375
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.89 E-value=2.2e-05 Score=59.79 Aligned_cols=49 Identities=20% Similarity=0.270 Sum_probs=32.8
Q ss_pred CCCchhHHHHHHhhCCC----CCccccceeeeEEEEEEEECCeEEEEEEEeCCChh
Q 030225 1 MGTGKTSLVLRFVKGQF----FDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 52 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~----~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 52 (181)
||||||||+|+|++... .....+..|++.....+..++. +.++||||-.
T Consensus 163 ~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~~~---~~l~DtPG~~ 215 (360)
T TIGR03597 163 TNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDDG---HSLYDTPGII 215 (360)
T ss_pred CCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeCCC---CEEEECCCCC
Confidence 79999999999997532 1123344555666666665332 4699999954
No 376
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.89 E-value=2e-05 Score=56.91 Aligned_cols=49 Identities=18% Similarity=0.125 Sum_probs=29.0
Q ss_pred CCCchhHHHHHHhhCCCCCc------cccceeeeEEEEEEEECCeEEEEEEEeCCChhh
Q 030225 1 MGTGKTSLVLRFVKGQFFDF------QESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 53 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~------~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 53 (181)
||||||||+|+|.+...... ......++.....+...+. .++||||-..
T Consensus 129 sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l~~~----~liDtPG~~~ 183 (245)
T TIGR00157 129 SGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHFHGG----LIADTPGFNE 183 (245)
T ss_pred CCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEcCCc----EEEeCCCccc
Confidence 79999999999997532211 1111113333344444432 5999999654
No 377
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.86 E-value=0.00013 Score=45.73 Aligned_cols=97 Identities=16% Similarity=0.089 Sum_probs=57.6
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|+||||+...|-..-.......+.- ......... .+.++|+|+..... ....+..+|.++++.+.+ ..++
T Consensus 9 gg~gkt~~~~~la~~~~~~~~~~~~l-----~d~d~~~~~-D~IIiDtpp~~~~~--~~~~l~~aD~vlvvv~~~-~~s~ 79 (106)
T cd03111 9 GGVGATTLAANLAVALAKEAGRRVLL-----VDLDLQFGD-DYVVVDLGRSLDEV--SLAALDQADRVFLVTQQD-LPSI 79 (106)
T ss_pred CCCcHHHHHHHHHHHHHhcCCCcEEE-----EECCCCCCC-CEEEEeCCCCcCHH--HHHHHHHcCeEEEEecCC-hHHH
Confidence 58999997766543211110111111 111111111 78899999865322 344677899999998864 5677
Q ss_pred HHHHHHHHHHHHhCCC-CceEEEEEeC
Q 030225 81 ERAKKWVQELQRQGNP-NLIMFLVANK 106 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~~-~~p~ivi~nK 106 (181)
..+..+++.+.+...+ ...+.+++|+
T Consensus 80 ~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 80 RNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred HHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 7777887777765444 4566677774
No 378
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=97.84 E-value=6.4e-05 Score=55.68 Aligned_cols=76 Identities=14% Similarity=0.072 Sum_probs=49.5
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEEC---------------CeEEEEEEEeCCChh----hhhccchhh
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLN---------------EVTIKFDIWDTAGQE----RYHSLAPMY 61 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~---------------~~~~~~~i~D~~G~~----~~~~~~~~~ 61 (181)
||||||||+|.|......+..-|..+++-..-.+.+. .....++++|++|.. .-..+-..|
T Consensus 29 PNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGAs~G~GLGN~F 108 (391)
T KOG1491|consen 29 PNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGASAGEGLGNKF 108 (391)
T ss_pred CCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCcccCcCchHHH
Confidence 8999999999999877655444544433322233332 234678999998853 233444444
Q ss_pred ---ccCCcEEEEEEECCC
Q 030225 62 ---YRGAAAAVVVYDITS 76 (181)
Q Consensus 62 ---~~~~d~~i~v~d~~~ 76 (181)
++.+|+++-|+++.+
T Consensus 109 Ls~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 109 LSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred HHhhhhccceeEEEEecC
Confidence 567899999988664
No 379
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.81 E-value=8.1e-05 Score=54.53 Aligned_cols=96 Identities=16% Similarity=0.059 Sum_probs=56.7
Q ss_pred EEEEEEEeCCChhhhhccc----hh---h-----ccCCcEEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCC
Q 030225 40 TIKFDIWDTAGQERYHSLA----PM---Y-----YRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKV 107 (181)
Q Consensus 40 ~~~~~i~D~~G~~~~~~~~----~~---~-----~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~ 107 (181)
.+.+.++||||........ .. . -..+|..++|+|++-.. +.+. +.....+.. .+.-+|.||.
T Consensus 154 ~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~--~~~~-~~~~f~~~~---~~~g~IlTKl 227 (272)
T TIGR00064 154 NIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQ--NALE-QAKVFNEAV---GLTGIILTKL 227 (272)
T ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCH--HHHH-HHHHHHhhC---CCCEEEEEcc
Confidence 4678999999965322211 11 1 12389999999997432 2222 222222221 2467889999
Q ss_pred CCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHH
Q 030225 108 DLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFY 147 (181)
Q Consensus 108 D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~ 147 (181)
|..... -.........++|+.+++ +|++++++..
T Consensus 228 De~~~~----G~~l~~~~~~~~Pi~~~~--~Gq~~~dl~~ 261 (272)
T TIGR00064 228 DGTAKG----GIILSIAYELKLPIKFIG--VGEKIDDLAP 261 (272)
T ss_pred CCCCCc----cHHHHHHHHHCcCEEEEe--CCCChHhCcc
Confidence 964322 233444556689988887 8888876644
No 380
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.79 E-value=0.00013 Score=45.32 Aligned_cols=76 Identities=14% Similarity=0.138 Sum_probs=46.6
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|+||||+...+...-. ....++. .+..+.. +.+.++|+|+..... ....+..+|.++++.+. +..++
T Consensus 9 gG~Gkst~~~~la~~~~-~~~~~vl-------~~d~d~~-~d~viiD~p~~~~~~--~~~~l~~ad~viv~~~~-~~~s~ 76 (104)
T cd02042 9 GGVGKTTTAVNLAAALA-RRGKRVL-------LIDLDPQ-YDYIIIDTPPSLGLL--TRNALAAADLVLIPVQP-SPLDL 76 (104)
T ss_pred CCcCHHHHHHHHHHHHH-hCCCcEE-------EEeCCCC-CCEEEEeCcCCCCHH--HHHHHHHCCEEEEeccC-CHHHH
Confidence 58999998766543211 1111221 1222211 678899999865322 23667789999999986 45667
Q ss_pred HHHHHHHH
Q 030225 81 ERAKKWVQ 88 (181)
Q Consensus 81 ~~~~~~~~ 88 (181)
..+.++++
T Consensus 77 ~~~~~~~~ 84 (104)
T cd02042 77 DGLEKLLE 84 (104)
T ss_pred HHHHHHHH
Confidence 76666665
No 381
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=97.79 E-value=0.00021 Score=56.58 Aligned_cols=126 Identities=16% Similarity=0.175 Sum_probs=72.2
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
||.|||||++.|...-.. .|+..-... ...+.+..-++.+.++|.. .+.+.. ..+=+|++++++|.+-.-.+
T Consensus 78 pGtGKsTLirSlVrr~tk----~ti~~i~GP-iTvvsgK~RRiTflEcp~D--l~~miD-vaKIaDLVlLlIdgnfGfEM 149 (1077)
T COG5192 78 PGTGKSTLIRSLVRRFTK----QTIDEIRGP-ITVVSGKTRRITFLECPSD--LHQMID-VAKIADLVLLLIDGNFGFEM 149 (1077)
T ss_pred CCCChhHHHHHHHHHHHH----hhhhccCCc-eEEeecceeEEEEEeChHH--HHHHHh-HHHhhheeEEEeccccCcee
Confidence 799999999988743211 111111111 2235677789999999943 333322 33458999999997733211
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHH------HHHHH-cCCeEEEEecCC
Q 030225 81 ERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGE------LYAQE-NGLSFLETSAKS 138 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~------~~~~~-~~~~~~~~Sa~~ 138 (181)
+.-.+++.+..+..+ .++-|+++.|+-.... ...... .|..- .|+.+|++|-..
T Consensus 150 -ETmEFLnil~~HGmP--rvlgV~ThlDlfk~~s-tLr~~KKrlkhRfWtEiyqGaKlFylsgV~ 210 (1077)
T COG5192 150 -ETMEFLNILISHGMP--RVLGVVTHLDLFKNPS-TLRSIKKRLKHRFWTEIYQGAKLFYLSGVE 210 (1077)
T ss_pred -hHHHHHHHHhhcCCC--ceEEEEeecccccChH-HHHHHHHHHhhhHHHHHcCCceEEEecccc
Confidence 123455666666543 3777899999854222 111111 12211 267888888664
No 382
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.79 E-value=0.00021 Score=53.60 Aligned_cols=85 Identities=7% Similarity=0.010 Sum_probs=46.1
Q ss_pred EEEEEEeCCChhhhhccchhhcc--------CCcEEEEEEECCChhHHHH-HHHHHHHHHHhCCCCceEEEEEeCCCCcc
Q 030225 41 IKFDIWDTAGQERYHSLAPMYYR--------GAAAAVVVYDITSMDSFER-AKKWVQELQRQGNPNLIMFLVANKVDLEE 111 (181)
Q Consensus 41 ~~~~i~D~~G~~~~~~~~~~~~~--------~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~p~ivi~nK~D~~~ 111 (181)
....++++.|...-..+...++. ..++++.|+|+.+...... ......++.. --++++||+|+..
T Consensus 91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~------AD~IvlnK~Dl~~ 164 (318)
T PRK11537 91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGY------ADRILLTKTDVAG 164 (318)
T ss_pred CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHh------CCEEEEeccccCC
Confidence 45678888886544333333322 2478999999875332111 1111122211 2477889999875
Q ss_pred cccCCHHHHHHHHHHcC--CeEEEEe
Q 030225 112 KRKVKNEEGELYAQENG--LSFLETS 135 (181)
Q Consensus 112 ~~~~~~~~~~~~~~~~~--~~~~~~S 135 (181)
.. +......+..+ ++++.++
T Consensus 165 ~~----~~~~~~l~~lnp~a~i~~~~ 186 (318)
T PRK11537 165 EA----EKLRERLARINARAPVYTVV 186 (318)
T ss_pred HH----HHHHHHHHHhCCCCEEEEec
Confidence 32 34555555554 4566543
No 383
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.79 E-value=0.003 Score=42.21 Aligned_cols=137 Identities=21% Similarity=0.193 Sum_probs=68.2
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCC-Chh--------------hh-----------
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTA-GQE--------------RY----------- 54 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~-G~~--------------~~----------- 54 (181)
||||||||+.++.+.--..-+ ..-| +...++.-++.-+-|.+.|+. |.. .|
T Consensus 14 PGvGKtTl~~ki~e~L~~~g~-kvgG--f~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~V~v~~le~i~ 90 (179)
T COG1618 14 PGVGKTTLVLKIAEKLREKGY-KVGG--FITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYGVNVEGLEEIA 90 (179)
T ss_pred CCccHHHHHHHHHHHHHhcCc-eeee--EEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEEeeHHHHHHHh
Confidence 899999999988742111101 1112 333444445555566666665 210 11
Q ss_pred hccchhhccCCcEEEEEEECCChhHHHH-HHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEE
Q 030225 55 HSLAPMYYRGAAAAVVVYDITSMDSFER-AKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLE 133 (181)
Q Consensus 55 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (181)
.......++.+|++| +|---+ ++. ...+...+...-..++|.+..+.+.+. .. ..+..+..+..++.
T Consensus 91 ~~al~rA~~~aDvII--IDEIGp--MElks~~f~~~ve~vl~~~kpliatlHrrsr----~P----~v~~ik~~~~v~v~ 158 (179)
T COG1618 91 IPALRRALEEADVII--IDEIGP--MELKSKKFREAVEEVLKSGKPLIATLHRRSR----HP----LVQRIKKLGGVYVF 158 (179)
T ss_pred HHHHHHHhhcCCEEE--Eecccc--hhhccHHHHHHHHHHhcCCCcEEEEEecccC----Ch----HHHHhhhcCCEEEE
Confidence 111234456678554 453322 222 123333343333356787777776653 11 12223344444443
Q ss_pred EecCCCCCHHHHHHHHHHHHHh
Q 030225 134 TSAKSAHNVNELFYEIAKRLAE 155 (181)
Q Consensus 134 ~Sa~~~~gi~~~~~~l~~~~~~ 155 (181)
.+.+|-+.+++.+...+..
T Consensus 159 ---lt~~NR~~i~~~Il~~L~~ 177 (179)
T COG1618 159 ---LTPENRNRILNEILSVLKG 177 (179)
T ss_pred ---EccchhhHHHHHHHHHhcc
Confidence 5556666888888776543
No 384
>PRK14974 cell division protein FtsY; Provisional
Probab=97.79 E-value=8.4e-05 Score=55.93 Aligned_cols=96 Identities=18% Similarity=0.080 Sum_probs=56.2
Q ss_pred EEEEEEeCCChhhhhcc----chhh--ccCCcEEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccc
Q 030225 41 IKFDIWDTAGQERYHSL----APMY--YRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRK 114 (181)
Q Consensus 41 ~~~~i~D~~G~~~~~~~----~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~ 114 (181)
+.+.++||+|....... ...+ ..+.|..++|.|++...... ......... -..--+|+||.|....--
T Consensus 223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~---~~a~~f~~~---~~~~giIlTKlD~~~~~G 296 (336)
T PRK14974 223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAV---EQAREFNEA---VGIDGVILTKVDADAKGG 296 (336)
T ss_pred CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHH---HHHHHHHhc---CCCCEEEEeeecCCCCcc
Confidence 46899999996532111 1111 23578899999987543211 112222211 124677889999743211
Q ss_pred CCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Q 030225 115 VKNEEGELYAQENGLSFLETSAKSAHNVNELFYE 148 (181)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~ 148 (181)
.+...+...+.|+.+++ +|++++++..+
T Consensus 297 ----~~ls~~~~~~~Pi~~i~--~Gq~v~Dl~~~ 324 (336)
T PRK14974 297 ----AALSIAYVIGKPILFLG--VGQGYDDLIPF 324 (336)
T ss_pred ----HHHHHHHHHCcCEEEEe--CCCChhhcccC
Confidence 23344445689988887 79998877543
No 385
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.72 E-value=3.1e-05 Score=56.65 Aligned_cols=112 Identities=14% Similarity=0.148 Sum_probs=67.3
Q ss_pred EEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccC--CHHH
Q 030225 42 KFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKV--KNEE 119 (181)
Q Consensus 42 ~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~--~~~~ 119 (181)
++.|.|+|||+-.......-..-.|++++++..+.+-.-...-+.+..+.. +.-+.++++-||+|+....+- ..++
T Consensus 126 HVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaavei--M~LkhiiilQNKiDli~e~~A~eq~e~ 203 (466)
T KOG0466|consen 126 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEI--MKLKHIIILQNKIDLIKESQALEQHEQ 203 (466)
T ss_pred EEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHH--hhhceEEEEechhhhhhHHHHHHHHHH
Confidence 578999999985433222222224666666665542111111122222211 122458888999999754332 1233
Q ss_pred HHHHHHHc---CCeEEEEecCCCCCHHHHHHHHHHHHHh
Q 030225 120 GELYAQEN---GLSFLETSAKSAHNVNELFYEIAKRLAE 155 (181)
Q Consensus 120 ~~~~~~~~---~~~~~~~Sa~~~~gi~~~~~~l~~~~~~ 155 (181)
...|.+.. +.|++.+||.-+.||+-+.++|++.+.-
T Consensus 204 I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPv 242 (466)
T KOG0466|consen 204 IQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPV 242 (466)
T ss_pred HHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCC
Confidence 44555543 4699999999999999999999987754
No 386
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.62 E-value=0.0006 Score=52.92 Aligned_cols=85 Identities=12% Similarity=0.023 Sum_probs=45.5
Q ss_pred EEEEEEEeCCChhhhhcc----chhh--ccCCcEEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccc
Q 030225 40 TIKFDIWDTAGQERYHSL----APMY--YRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 113 (181)
Q Consensus 40 ~~~~~i~D~~G~~~~~~~----~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~ 113 (181)
.+.+.|+||+|....... ...+ ..+.+-+++|+|++-...-. .....+.+. -.+.-+|+||.|....-
T Consensus 182 ~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~---~~a~~F~~~---~~~~g~IlTKlD~~arg 255 (429)
T TIGR01425 182 NFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAE---AQAKAFKDS---VDVGSVIITKLDGHAKG 255 (429)
T ss_pred CCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHH---HHHHHHHhc---cCCcEEEEECccCCCCc
Confidence 467899999996432211 1111 23578899999987442221 122222221 23677889999963211
Q ss_pred cCCHHHHHHHHHHcCCeEEEE
Q 030225 114 KVKNEEGELYAQENGLSFLET 134 (181)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~ 134 (181)
-.+.......+.|+.++
T Consensus 256 ----G~aLs~~~~t~~PI~fi 272 (429)
T TIGR01425 256 ----GGALSAVAATKSPIIFI 272 (429)
T ss_pred ----cHHhhhHHHHCCCeEEE
Confidence 11233344456665555
No 387
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=97.61 E-value=0.00075 Score=48.50 Aligned_cols=78 Identities=15% Similarity=0.027 Sum_probs=45.4
Q ss_pred CCCchhHHHHHHhhCCCC-CccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhh-------ccchhhccCCcEEEEEE
Q 030225 1 MGTGKTSLVLRFVKGQFF-DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYH-------SLAPMYYRGAAAAVVVY 72 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~~~~~~~~~d~~i~v~ 72 (181)
|.+|||||+..+.+.... +.+. +++.....-.......++++.|.||--+-. ...-+..+.|+++++|.
T Consensus 68 PSvGksTl~~~l~g~~s~vasye---fttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qviavartcnli~~vl 144 (358)
T KOG1487|consen 68 PSVGKSTLLSKLTGTFSEVAAYE---FTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVIAVARTCNLIFIVL 144 (358)
T ss_pred CccchhhhhhhhcCCCCcccccc---ceeEEEecceEeccccceeeecCcchhcccccCCCCccEEEEEeecccEEEEEe
Confidence 789999999988864321 2221 222222222222334467899999942211 11234467799999999
Q ss_pred ECCChhHHH
Q 030225 73 DITSMDSFE 81 (181)
Q Consensus 73 d~~~~~s~~ 81 (181)
|+--|-+..
T Consensus 145 d~~kp~~hk 153 (358)
T KOG1487|consen 145 DVLKPLSHK 153 (358)
T ss_pred eccCcccHH
Confidence 987654433
No 388
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=97.59 E-value=0.00017 Score=49.54 Aligned_cols=82 Identities=23% Similarity=0.185 Sum_probs=40.8
Q ss_pred EEEEEEeCCChhhhhcc--c-h--hhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccC
Q 030225 41 IKFDIWDTAGQERYHSL--A-P--MYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKV 115 (181)
Q Consensus 41 ~~~~i~D~~G~~~~~~~--~-~--~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~ 115 (181)
....++++.|...-..+ . . ...-..+.+|.|+|+.+..........+...... --++++||+|+.+..+
T Consensus 85 ~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~-----ADvIvlnK~D~~~~~~- 158 (178)
T PF02492_consen 85 PDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAF-----ADVIVLNKIDLVSDEQ- 158 (178)
T ss_dssp -SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT------SEEEEE-GGGHHHH--
T ss_pred cCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcchh-----cCEEEEeccccCChhh-
Confidence 45667788875433322 0 0 0012468899999997653333332222222222 2477789999876442
Q ss_pred CHHHHHHHHHHcC
Q 030225 116 KNEEGELYAQENG 128 (181)
Q Consensus 116 ~~~~~~~~~~~~~ 128 (181)
..+...+..++.+
T Consensus 159 ~i~~~~~~ir~ln 171 (178)
T PF02492_consen 159 KIERVREMIRELN 171 (178)
T ss_dssp -HHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHC
Confidence 2244455555544
No 389
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=97.59 E-value=0.0002 Score=55.84 Aligned_cols=79 Identities=22% Similarity=0.180 Sum_probs=53.2
Q ss_pred CeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcc-cccCC
Q 030225 38 EVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEE-KRKVK 116 (181)
Q Consensus 38 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~-~~~~~ 116 (181)
+..+-++++|.|||..|.+...+.++-.|+.++|+|..+.--.+.-.-+.+.+.++ -+| +++.||.|..- +.++.
T Consensus 95 ~~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~ER---IkP-vlv~NK~DRAlLELq~~ 170 (842)
T KOG0469|consen 95 GNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAER---IKP-VLVMNKMDRALLELQLS 170 (842)
T ss_pred CcceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHhh---ccc-eEEeehhhHHHHhhcCC
Confidence 44678899999999999999999999999999999988753332222223333332 234 55679999531 23444
Q ss_pred HHHH
Q 030225 117 NEEG 120 (181)
Q Consensus 117 ~~~~ 120 (181)
.++.
T Consensus 171 ~EeL 174 (842)
T KOG0469|consen 171 QEEL 174 (842)
T ss_pred HHHH
Confidence 4443
No 390
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=97.57 E-value=0.00088 Score=45.90 Aligned_cols=86 Identities=24% Similarity=0.226 Sum_probs=60.2
Q ss_pred eEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHH
Q 030225 39 VTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNE 118 (181)
Q Consensus 39 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~ 118 (181)
..+.+.++|+|+.... .....+..+|.++++...+ ..+...+..+++.+... +.|+.+++||.|... ....
T Consensus 91 ~~~d~viiDtpp~~~~--~~~~~l~~aD~vliv~~~~-~~~~~~~~~~~~~l~~~---~~~~~vV~N~~~~~~---~~~~ 161 (179)
T cd03110 91 EGAELIIIDGPPGIGC--PVIASLTGADAALLVTEPT-PSGLHDLERAVELVRHF---GIPVGVVINKYDLND---EIAE 161 (179)
T ss_pred cCCCEEEEECcCCCcH--HHHHHHHcCCEEEEEecCC-cccHHHHHHHHHHHHHc---CCCEEEEEeCCCCCc---chHH
Confidence 4578899999976432 2344668899999999976 44666677777666543 456889999998643 2345
Q ss_pred HHHHHHHHcCCeEEE
Q 030225 119 EGELYAQENGLSFLE 133 (181)
Q Consensus 119 ~~~~~~~~~~~~~~~ 133 (181)
+..+++++.+++++.
T Consensus 162 ~~~~~~~~~~~~vl~ 176 (179)
T cd03110 162 EIEDYCEEEGIPILG 176 (179)
T ss_pred HHHHHHHHcCCCeEE
Confidence 566778878887653
No 391
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=97.52 E-value=0.0075 Score=46.59 Aligned_cols=78 Identities=14% Similarity=0.241 Sum_probs=45.8
Q ss_pred EEEEEEECC--C--hhHHHHH-HHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCC--C
Q 030225 67 AAVVVYDIT--S--MDSFERA-KKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKS--A 139 (181)
Q Consensus 67 ~~i~v~d~~--~--~~s~~~~-~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~--~ 139 (181)
++++.-|-+ + ++.+.+. .+.++.+.. -++|+++++|-.+-.. +...+....+..+++++++.+++.+ .
T Consensus 148 GiVVTTDGSi~dipRe~Y~eAEervI~ELk~---igKPFvillNs~~P~s--~et~~L~~eL~ekY~vpVlpvnc~~l~~ 222 (492)
T PF09547_consen 148 GIVVTTDGSITDIPRENYVEAEERVIEELKE---IGKPFVILLNSTKPYS--EETQELAEELEEKYDVPVLPVNCEQLRE 222 (492)
T ss_pred eEEEecCCCccCCChHHHHHHHHHHHHHHHH---hCCCEEEEEeCCCCCC--HHHHHHHHHHHHHhCCcEEEeehHHcCH
Confidence 555554433 1 3444443 345555544 4789999999876422 2233445667777899988888764 3
Q ss_pred CCHHHHHHHH
Q 030225 140 HNVNELFYEI 149 (181)
Q Consensus 140 ~gi~~~~~~l 149 (181)
+.|..+++.+
T Consensus 223 ~DI~~Il~~v 232 (492)
T PF09547_consen 223 EDITRILEEV 232 (492)
T ss_pred HHHHHHHHHH
Confidence 4444444444
No 392
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.50 E-value=0.00017 Score=53.36 Aligned_cols=51 Identities=16% Similarity=0.186 Sum_probs=30.4
Q ss_pred CCCchhHHHHHHhhCCCCCcc------ccceeeeEEEEEEEECCeEEEEEEEeCCChhhh
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQ------ESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERY 54 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~------~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~ 54 (181)
||+|||||+|.|.+......- .....++.....+...+.. .++|+||-..+
T Consensus 170 sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~~---~liDtPG~~~~ 226 (287)
T cd01854 170 SGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGGG---LLIDTPGFREF 226 (287)
T ss_pred CCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCCC---EEEECCCCCcc
Confidence 799999999999975432211 1111233334444554322 49999997654
No 393
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=97.49 E-value=9.1e-05 Score=57.64 Aligned_cols=48 Identities=23% Similarity=0.184 Sum_probs=37.7
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChh
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 52 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 52 (181)
|||||||+||+|.+.+.+. ...|.|-+....++.+... +.+-||||..
T Consensus 323 PNVGKSSTINaLvG~KkVs-VS~TPGkTKHFQTi~ls~~---v~LCDCPGLV 370 (562)
T KOG1424|consen 323 PNVGKSSTINALVGRKKVS-VSSTPGKTKHFQTIFLSPS---VCLCDCPGLV 370 (562)
T ss_pred CCCchhHHHHHHhcCceee-eecCCCCcceeEEEEcCCC---ceecCCCCcc
Confidence 8999999999999988655 4478887777777666653 5699999964
No 394
>PRK00098 GTPase RsgA; Reviewed
Probab=97.48 E-value=0.00019 Score=53.37 Aligned_cols=50 Identities=18% Similarity=0.107 Sum_probs=28.8
Q ss_pred CCCchhHHHHHHhhCCCCCcc-cc-----ceeeeEEEEEEEECCeEEEEEEEeCCChhh
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQ-ES-----TIGAAFFTQVLSLNEVTIKFDIWDTAGQER 53 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~-~~-----t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 53 (181)
||||||||+|+|.+......- .+ ...++.....+..++. ..++|+||-..
T Consensus 173 sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~~---~~~~DtpG~~~ 228 (298)
T PRK00098 173 SGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPGG---GLLIDTPGFSS 228 (298)
T ss_pred CCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCCC---cEEEECCCcCc
Confidence 799999999999875432211 00 0012233344444433 25899999643
No 395
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=97.48 E-value=0.006 Score=48.52 Aligned_cols=104 Identities=16% Similarity=0.205 Sum_probs=61.6
Q ss_pred EEEEEEeCCCh-------------hhhhccchhhccCCcEEEEEEECCChhH-HHHHHHHHHHHHHhCCCCceEEEEEeC
Q 030225 41 IKFDIWDTAGQ-------------ERYHSLAPMYYRGAAAAVVVYDITSMDS-FERAKKWVQELQRQGNPNLIMFLVANK 106 (181)
Q Consensus 41 ~~~~i~D~~G~-------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~p~ivi~nK 106 (181)
.++.+.|.||. +....+..+|+.+.+++|+|+--..-+. -..+..++..+ ...+...++|++|
T Consensus 412 qRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDAERSnVTDLVsq~---DP~GrRTIfVLTK 488 (980)
T KOG0447|consen 412 QRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDAERSIVTDLVSQM---DPHGRRTIFVLTK 488 (980)
T ss_pred ceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcchhhhhHHHHHHhc---CCCCCeeEEEEee
Confidence 47899999993 3345677899999999999975221111 01122222222 3357789999999
Q ss_pred CCCcccccCCHHHHHHHHHHcC-----CeEEEEecCCC---CCHHHHHH
Q 030225 107 VDLEEKRKVKNEEGELYAQENG-----LSFLETSAKSA---HNVNELFY 147 (181)
Q Consensus 107 ~D~~~~~~~~~~~~~~~~~~~~-----~~~~~~Sa~~~---~gi~~~~~ 147 (181)
.|+.+..--.+.....++...- +.||.+-.=.| +.|+.+.+
T Consensus 489 VDlAEknlA~PdRI~kIleGKLFPMKALGYfaVVTGrGnssdSIdaIR~ 537 (980)
T KOG0447|consen 489 VDLAEKNVASPSRIQQIIEGKLFPMKALGYFAVVTGKGNSSESIEAIRE 537 (980)
T ss_pred cchhhhccCCHHHHHHHHhcCccchhhcceeEEEecCCCcchhHHHHHH
Confidence 9997754445555555544321 34666643333 34554443
No 396
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=97.44 E-value=0.0027 Score=43.26 Aligned_cols=84 Identities=14% Similarity=0.078 Sum_probs=51.9
Q ss_pred EEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHH
Q 030225 42 KFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGE 121 (181)
Q Consensus 42 ~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~ 121 (181)
.+.++|+|+..... ....+..+|.+|++.+.+ ..++..+..+++.+... ......+++|+.+..... ..+...
T Consensus 64 d~viiD~p~~~~~~--~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~~~~~--~~~~~~iv~N~~~~~~~~--~~~~~~ 136 (179)
T cd02036 64 DYILIDSPAGIERG--FITAIAPADEALLVTTPE-ISSLRDADRVKGLLEAL--GIKVVGVIVNRVRPDMVE--GGDMVE 136 (179)
T ss_pred CEEEEECCCCCcHH--HHHHHHhCCcEEEEeCCC-cchHHHHHHHHHHHHHc--CCceEEEEEeCCcccccc--hhhHHH
Confidence 68899999864332 344567899999999875 45566666666666553 234567889998863321 112223
Q ss_pred HHHHHcCCeEE
Q 030225 122 LYAQENGLSFL 132 (181)
Q Consensus 122 ~~~~~~~~~~~ 132 (181)
.+.+.++.+++
T Consensus 137 ~~~~~~~~~v~ 147 (179)
T cd02036 137 DIEEILGVPLL 147 (179)
T ss_pred HHHHHhCCCEE
Confidence 44444566654
No 397
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.42 E-value=0.0011 Score=50.64 Aligned_cols=92 Identities=12% Similarity=0.013 Sum_probs=48.2
Q ss_pred EEEEEEEeCCChhhhhcc---chhhc---cCCcEEEEEEECCCh-hHHHHHHHHHHHHHHhCCC--CceEEEEEeCCCCc
Q 030225 40 TIKFDIWDTAGQERYHSL---APMYY---RGAAAAVVVYDITSM-DSFERAKKWVQELQRQGNP--NLIMFLVANKVDLE 110 (181)
Q Consensus 40 ~~~~~i~D~~G~~~~~~~---~~~~~---~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~--~~p~ivi~nK~D~~ 110 (181)
...+.++||+|....... ....+ ....-.++|++++.. +...++..-+......... ..+.=+|+||.|..
T Consensus 215 ~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt 294 (374)
T PRK14722 215 NKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEA 294 (374)
T ss_pred CCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccC
Confidence 357889999996532211 11112 233456888898853 3344433222222111000 01346778999953
Q ss_pred ccccCCHHHHHHHHHHcCCeEEEEe
Q 030225 111 EKRKVKNEEGELYAQENGLSFLETS 135 (181)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~S 135 (181)
. ..-.+..++...++|+.+++
T Consensus 295 ~----~~G~~l~~~~~~~lPi~yvt 315 (374)
T PRK14722 295 S----NLGGVLDTVIRYKLPVHYVS 315 (374)
T ss_pred C----CccHHHHHHHHHCcCeEEEe
Confidence 3 22344566666788876664
No 398
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.35 E-value=0.0018 Score=44.09 Aligned_cols=84 Identities=14% Similarity=0.072 Sum_probs=45.5
Q ss_pred EEEEEEEeCCChhhhhc----cchhh--ccCCcEEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccc
Q 030225 40 TIKFDIWDTAGQERYHS----LAPMY--YRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 113 (181)
Q Consensus 40 ~~~~~i~D~~G~~~~~~----~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~ 113 (181)
.+.+.++|++|...... ....+ ....+.+++|+|...... ...+...+.+.. + ..-+|.||.|.....
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~---~~~~~~~~~~~~--~-~~~viltk~D~~~~~ 155 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQD---AVNQAKAFNEAL--G-ITGVILTKLDGDARG 155 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChH---HHHHHHHHHhhC--C-CCEEEEECCcCCCCc
Confidence 34678999999742211 11111 124899999999865432 223334443332 2 356777999964322
Q ss_pred cCCHHHHHHHHHHcCCeEEE
Q 030225 114 KVKNEEGELYAQENGLSFLE 133 (181)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~ 133 (181)
. .....+...++|+..
T Consensus 156 g----~~~~~~~~~~~p~~~ 171 (173)
T cd03115 156 G----AALSIRAVTGKPIKF 171 (173)
T ss_pred c----hhhhhHHHHCcCeEe
Confidence 1 222355556666544
No 399
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=97.32 E-value=0.00033 Score=52.86 Aligned_cols=102 Identities=15% Similarity=0.134 Sum_probs=58.6
Q ss_pred EEEEEeCCChhhhhccchhhc--cCCcEEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHH
Q 030225 42 KFDIWDTAGQERYHSLAPMYY--RGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEE 119 (181)
Q Consensus 42 ~~~i~D~~G~~~~~~~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~ 119 (181)
-+.|+|..|++.|-...-.-+ .-.|.-++++-++.. ..-...+.+-..+. .++|++++.+|+|+..... ..+-
T Consensus 220 viTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaG-IiGmTKEHLgLALa---L~VPVfvVVTKIDMCPANi-LqEt 294 (641)
T KOG0463|consen 220 VITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAG-IIGMTKEHLGLALA---LHVPVFVVVTKIDMCPANI-LQET 294 (641)
T ss_pred eEEEEeccchhhhhheeeeccccCCCCceEEEeccccc-ceeccHHhhhhhhh---hcCcEEEEEEeeccCcHHH-HHHH
Confidence 478999999998865432222 125666777776532 11112222222222 4789999999999853211 1111
Q ss_pred -----------------------------HHHHHHHcCCeEEEEecCCCCCHHHHHHH
Q 030225 120 -----------------------------GELYAQENGLSFLETSAKSAHNVNELFYE 148 (181)
Q Consensus 120 -----------------------------~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~ 148 (181)
+..|-.+.-+++|.+|-.+|+|+.-+.-.
T Consensus 295 mKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLkmF 352 (641)
T KOG0463|consen 295 MKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLKMF 352 (641)
T ss_pred HHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHHHH
Confidence 11222223368899999999998755443
No 400
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.29 E-value=0.0015 Score=56.48 Aligned_cols=70 Identities=20% Similarity=0.205 Sum_probs=43.3
Q ss_pred EEEEEeCCChh--------hhhccchhh---------ccCCcEEEEEEECCChh------H---HHHHHHHHHHHHHhCC
Q 030225 42 KFDIWDTAGQE--------RYHSLAPMY---------YRGAAAAVVVYDITSMD------S---FERAKKWVQELQRQGN 95 (181)
Q Consensus 42 ~~~i~D~~G~~--------~~~~~~~~~---------~~~~d~~i~v~d~~~~~------s---~~~~~~~~~~~~~~~~ 95 (181)
+-.++||.|.- .-...|..+ .+..+++|+.+|+++.- . ...++.=++++...-.
T Consensus 175 eaVlIDtaGry~~q~s~~~~~~~~W~~fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~ 254 (1188)
T COG3523 175 EAVLIDTAGRYITQDSADEVDRAEWLGFLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLH 254 (1188)
T ss_pred ceEEEcCCcceecccCcchhhHHHHHHHHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34589998831 223344433 45689999999988621 1 1112222444444434
Q ss_pred CCceEEEEEeCCCCcc
Q 030225 96 PNLIMFLVANKVDLEE 111 (181)
Q Consensus 96 ~~~p~ivi~nK~D~~~ 111 (181)
-..|+.+++||.|+..
T Consensus 255 ~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 255 ARLPVYLVLTKADLLP 270 (1188)
T ss_pred cCCceEEEEecccccc
Confidence 6789999999999854
No 401
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=97.24 E-value=0.0014 Score=44.73 Aligned_cols=44 Identities=23% Similarity=0.178 Sum_probs=27.6
Q ss_pred cEEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcc
Q 030225 66 AAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEE 111 (181)
Q Consensus 66 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~ 111 (181)
|++++|+|+.++.+-.. ..+.+.+. ....++|+++++||+|+.+
T Consensus 1 DvVl~VvDar~p~~~~~-~~i~~~~~-l~~~~kp~IlVlNK~DL~~ 44 (172)
T cd04178 1 DVILEVLDARDPLGCRC-PQVEEAVL-QAGGNKKLVLVLNKIDLVP 44 (172)
T ss_pred CEEEEEEECCCCCCCCC-HHHHHHHH-hccCCCCEEEEEehhhcCC
Confidence 78999999987532211 12222211 1124689999999999954
No 402
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.23 E-value=0.0049 Score=49.12 Aligned_cols=89 Identities=15% Similarity=0.140 Sum_probs=49.2
Q ss_pred EEEEEEEeCCChhhhhcc-------chhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccc
Q 030225 40 TIKFDIWDTAGQERYHSL-------APMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEK 112 (181)
Q Consensus 40 ~~~~~i~D~~G~~~~~~~-------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~ 112 (181)
.+.+.|+||+|....... .... . ....++|++.+. +...+...+..+.. ..+.-+|+||.|...
T Consensus 428 ~~DLVLIDTaG~s~~D~~l~eeL~~L~aa-~-~~a~lLVLpAts--s~~Dl~eii~~f~~----~~~~gvILTKlDEt~- 498 (559)
T PRK12727 428 DYKLVLIDTAGMGQRDRALAAQLNWLRAA-R-QVTSLLVLPANA--HFSDLDEVVRRFAH----AKPQGVVLTKLDETG- 498 (559)
T ss_pred cCCEEEecCCCcchhhHHHHHHHHHHHHh-h-cCCcEEEEECCC--ChhHHHHHHHHHHh----hCCeEEEEecCcCcc-
Confidence 467899999996432211 1111 1 234566777663 23333333343332 235778899999632
Q ss_pred ccCCHHHHHHHHHHcCCeEEEEecCCCCCH
Q 030225 113 RKVKNEEGELYAQENGLSFLETSAKSAHNV 142 (181)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 142 (181)
..-.........++++.+++ +|..|
T Consensus 499 ---~lG~aLsv~~~~~LPI~yvt--~GQ~V 523 (559)
T PRK12727 499 ---RFGSALSVVVDHQMPITWVT--DGQRV 523 (559)
T ss_pred ---chhHHHHHHHHhCCCEEEEe--CCCCc
Confidence 22345556666788877774 44444
No 403
>COG1161 Predicted GTPases [General function prediction only]
Probab=97.15 E-value=0.0011 Score=49.88 Aligned_cols=96 Identities=22% Similarity=0.164 Sum_probs=62.6
Q ss_pred EEeCCChh-hhhccchhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHH
Q 030225 45 IWDTAGQE-RYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELY 123 (181)
Q Consensus 45 i~D~~G~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~ 123 (181)
+-+.+|++ .+.......+..+|+++.|+|+.++.+... ..+.+.. .++|.++++||.|+..... ...=...+
T Consensus 14 i~~~~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~-----~~l~~~v-~~k~~i~vlNK~DL~~~~~-~~~W~~~~ 86 (322)
T COG1161 14 IQWFPGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRN-----PELERIV-KEKPKLLVLNKADLAPKEV-TKKWKKYF 86 (322)
T ss_pred ccCCCCchHHHHHHHHHhcccCCEEEEEEeccccccccC-----ccHHHHH-ccCCcEEEEehhhcCCHHH-HHHHHHHH
Confidence 34457875 556666778899999999999999865322 1222221 3455699999999965333 22222334
Q ss_pred HHHcCCeEEEEecCCCCCHHHHHH
Q 030225 124 AQENGLSFLETSAKSAHNVNELFY 147 (181)
Q Consensus 124 ~~~~~~~~~~~Sa~~~~gi~~~~~ 147 (181)
.++.+...+.++++.+.+...+..
T Consensus 87 ~~~~~~~~~~v~~~~~~~~~~i~~ 110 (322)
T COG1161 87 KKEEGIKPIFVSAKSRQGGKKIRK 110 (322)
T ss_pred HhcCCCccEEEEeecccCccchHH
Confidence 444467778888888887777764
No 404
>PRK13695 putative NTPase; Provisional
Probab=97.12 E-value=0.012 Score=40.21 Aligned_cols=78 Identities=18% Similarity=0.187 Sum_probs=41.7
Q ss_pred hhccCCcEEEEEEEC---CChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEec
Q 030225 60 MYYRGAAAAVVVYDI---TSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSA 136 (181)
Q Consensus 60 ~~~~~~d~~i~v~d~---~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 136 (181)
..+.++++ +++|- .+..+ ......+..+. ..+.|++++.+|... .....++..-.+..++++
T Consensus 92 ~~l~~~~~--lllDE~~~~e~~~-~~~~~~l~~~~---~~~~~~i~v~h~~~~-------~~~~~~i~~~~~~~i~~~-- 156 (174)
T PRK13695 92 RALEEADV--IIIDEIGKMELKS-PKFVKAVEEVL---DSEKPVIATLHRRSV-------HPFVQEIKSRPGGRVYEL-- 156 (174)
T ss_pred hccCCCCE--EEEECCCcchhhh-HHHHHHHHHHH---hCCCeEEEEECchhh-------HHHHHHHhccCCcEEEEE--
Confidence 34566776 57772 22111 11223333333 246789998887532 122333444455667776
Q ss_pred CCCCCHHHHHHHHHHHH
Q 030225 137 KSAHNVNELFYEIAKRL 153 (181)
Q Consensus 137 ~~~~gi~~~~~~l~~~~ 153 (181)
+.+|-+++.+.+.+.+
T Consensus 157 -~~~~r~~~~~~~~~~~ 172 (174)
T PRK13695 157 -TPENRDSLPFEILNRL 172 (174)
T ss_pred -cchhhhhHHHHHHHHH
Confidence 4556667777777654
No 405
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.11 E-value=0.0044 Score=37.42 Aligned_cols=90 Identities=14% Similarity=0.076 Sum_probs=48.4
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhcc-chhhccCCcEEEEEEECCChhH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSL-APMYYRGAAAAVVVYDITSMDS 79 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-~~~~~~~~d~~i~v~d~~~~~s 79 (181)
+|+||||+...+...-....+ +.. .++ .+.++|+++....... .......+|.++++.+... .+
T Consensus 8 ~G~Gktt~~~~l~~~l~~~g~-~v~---------~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~~~-~~ 72 (99)
T cd01983 8 GGVGKTTLAANLAAALAKRGK-RVL---------LID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTPEA-LA 72 (99)
T ss_pred CCCCHHHHHHHHHHHHHHCCC-eEE---------EEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecCCch-hh
Confidence 489999998887643211111 111 111 6789999986532221 1456667899999988754 34
Q ss_pred HHHHHHHHHHHHH-hCCCCceEEEEEe
Q 030225 80 FERAKKWVQELQR-QGNPNLIMFLVAN 105 (181)
Q Consensus 80 ~~~~~~~~~~~~~-~~~~~~p~ivi~n 105 (181)
............. ......+..++.|
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~vv~N 99 (99)
T cd01983 73 VLGARRLTEVVLELAIEGLRPVGVVVN 99 (99)
T ss_pred HHHHHHHHHHHHHhhccCCceEEEEeC
Confidence 4443333222222 2223444555443
No 406
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=97.07 E-value=0.0054 Score=43.58 Aligned_cols=104 Identities=13% Similarity=0.179 Sum_probs=63.5
Q ss_pred EEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhH--HHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCH
Q 030225 40 TIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDS--FERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKN 117 (181)
Q Consensus 40 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~ 117 (181)
.+.|.|+|+.|..... ....+..+|.+|+=.-.+..+. -.....|+..+.....+..|.-|+.|+..-.. .....
T Consensus 83 ~~d~VlvDleG~as~~--~~~aia~sDlVlIP~~~s~lD~~eA~~t~~~v~~~~~~~~~~ip~~Vl~Tr~~~~~-~~~~~ 159 (231)
T PF07015_consen 83 GFDFVLVDLEGGASEL--NDYAIARSDLVLIPMQPSQLDADEAAKTFKWVRRLEKAERRDIPAAVLFTRVPAAR-LTRAQ 159 (231)
T ss_pred CCCEEEEeCCCCCchh--HHHHHHHCCEEEECCCCChHHHHHHHHHHHHHHHHHHhhCCCCCeeEEEecCCcch-hhHHH
Confidence 3678999998865322 3556677998888665553322 22334555555554457889999999986321 11111
Q ss_pred HHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Q 030225 118 EEGELYAQENGLSFLETSAKSAHNVNELFYE 148 (181)
Q Consensus 118 ~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~ 148 (181)
.....+.. ++|++.+.-.+...+.++|..
T Consensus 160 ~~~~e~~~--~lpvl~t~l~eR~Af~~m~~~ 188 (231)
T PF07015_consen 160 RIISEQLE--SLPVLDTELHERDAFRAMFSR 188 (231)
T ss_pred HHHHHHHh--cCCccccccccHHHHHHHHHh
Confidence 11222222 588888888887777777773
No 407
>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []. CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].
Probab=97.02 E-value=0.015 Score=39.30 Aligned_cols=90 Identities=13% Similarity=0.057 Sum_probs=72.6
Q ss_pred CcEEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHH
Q 030225 65 AAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNE 144 (181)
Q Consensus 65 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 144 (181)
.|.++|++|.+...++..++.-+..+...... ..+.++++-....+...+...+..+++..++++++.+.-...++...
T Consensus 65 IDlIVFvinl~sk~SL~~ve~SL~~vd~~ffl-GKVCfl~t~a~~~~~~sv~~~~V~kla~~y~~plL~~~le~~~~~~~ 143 (176)
T PF11111_consen 65 IDLIVFVINLHSKYSLQSVEASLSHVDPSFFL-GKVCFLATNAGRESHCSVHPNEVRKLAATYNSPLLFADLENEEGRTS 143 (176)
T ss_pred eEEEEEEEecCCcccHHHHHHHHhhCChhhhc-cceEEEEcCCCcccccccCHHHHHHHHHHhCCCEEEeecccchHHHH
Confidence 69999999999999999888877777443323 34677777777667778888999999999999999999998888888
Q ss_pred HHHHHHHHHHh
Q 030225 145 LFYEIAKRLAE 155 (181)
Q Consensus 145 ~~~~l~~~~~~ 155 (181)
+-+.|.+.+.-
T Consensus 144 lAqRLL~~lqi 154 (176)
T PF11111_consen 144 LAQRLLRMLQI 154 (176)
T ss_pred HHHHHHHHHHH
Confidence 88877776544
No 408
>PRK10646 ADP-binding protein; Provisional
Probab=96.84 E-value=0.0063 Score=40.57 Aligned_cols=50 Identities=20% Similarity=0.246 Sum_probs=25.5
Q ss_pred CCchhHHHHHHhhCCCCCccccceeeeEEEEEEE-ECCeEEEEEEEeCCChh
Q 030225 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLS-LNEVTIKFDIWDTAGQE 52 (181)
Q Consensus 2 ~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~~~i~D~~G~~ 52 (181)
|+|||||.+.+...-.......+++.+... .+. -+..-+++-+|=..+.+
T Consensus 38 GaGKTtf~rgl~~~Lg~~~~V~SPTFtlv~-~Y~~~~~~l~H~DlYRL~~~~ 88 (153)
T PRK10646 38 GAGKTTFSRGFLQALGHQGNVKSPTYTLVE-PYTLDNLMVYHFDLYRLADPE 88 (153)
T ss_pred CCCHHHHHHHHHHHcCCCCCCCCCCEeeEE-EeeCCCCCEEEEeeccCCCHH
Confidence 899999999997643332222222222211 121 12234566666555443
No 409
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=96.81 E-value=0.0025 Score=40.90 Aligned_cols=52 Identities=21% Similarity=0.312 Sum_probs=24.8
Q ss_pred CCchhHHHHHHhhCCCCC--ccccceeeeEEEEEEE-ECCeEEEEEEEeCCChhhhhc
Q 030225 2 GTGKTSLVLRFVKGQFFD--FQESTIGAAFFTQVLS-LNEVTIKFDIWDTAGQERYHS 56 (181)
Q Consensus 2 ~~GKttLl~~l~~~~~~~--~~~~t~~~~~~~~~~~-~~~~~~~~~i~D~~G~~~~~~ 56 (181)
|+|||||.+.+...-... ..+||.. .. ..+. -+..-+++-++-..+.++...
T Consensus 25 GaGKTtf~r~l~~~lg~~~~V~SPTF~--l~-~~Y~~~~~~l~H~DLYRl~~~~e~~~ 79 (123)
T PF02367_consen 25 GAGKTTFVRGLARALGIDEEVTSPTFS--LV-NEYEGGNIPLYHFDLYRLEDPEELED 79 (123)
T ss_dssp TSSHHHHHHHHHHHTT--S----TTTT--SE-EEEEETTEEEEEEE-TT-SSTHHHHH
T ss_pred CCCHHHHHHHHHHHcCCCCCcCCCCeE--EE-EEecCCCceEEEeeccccCCHHHHHH
Confidence 899999999987643322 2334332 21 2222 222335566665555554333
No 410
>KOG2484 consensus GTPase [General function prediction only]
Probab=96.81 E-value=0.00073 Score=51.24 Aligned_cols=47 Identities=19% Similarity=0.295 Sum_probs=35.0
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCh
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 51 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~ 51 (181)
||+||||++|+|........ -++.|.+.....+..+. .+.|.|.||-
T Consensus 261 PNVGKSSvINsL~~~k~C~v-g~~pGvT~smqeV~Ldk---~i~llDsPgi 307 (435)
T KOG2484|consen 261 PNVGKSSVINSLKRRKACNV-GNVPGVTRSMQEVKLDK---KIRLLDSPGI 307 (435)
T ss_pred CCCChhHHHHHHHHhccccC-CCCccchhhhhheeccC---CceeccCCce
Confidence 89999999999998776443 25566666666665554 4679999994
No 411
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.80 E-value=0.0053 Score=47.73 Aligned_cols=89 Identities=16% Similarity=0.097 Sum_probs=49.3
Q ss_pred EEEEEEeCCChhhhhc----cchhhc--cCCcEEEEEEECCC-hhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccc
Q 030225 41 IKFDIWDTAGQERYHS----LAPMYY--RGAAAAVVVYDITS-MDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 113 (181)
Q Consensus 41 ~~~~i~D~~G~~~~~~----~~~~~~--~~~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~ 113 (181)
..+.++||+|...... ....+. ....-.++|+|++- ...+.+ ++.... .-.+-=+|+||.|...
T Consensus 270 ~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~---~~~~f~----~~~~~~~I~TKlDEt~-- 340 (420)
T PRK14721 270 KHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDE---VISAYQ----GHGIHGCIITKVDEAA-- 340 (420)
T ss_pred CCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHH---HHHHhc----CCCCCEEEEEeeeCCC--
Confidence 4678999999543211 112221 22446778889883 333332 222221 2234567789999633
Q ss_pred cCCHHHHHHHHHHcCCeEEEEecCCCCCH
Q 030225 114 KVKNEEGELYAQENGLSFLETSAKSAHNV 142 (181)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 142 (181)
..-.+..++...++++.+++ +|.+|
T Consensus 341 --~~G~~l~~~~~~~lPi~yvt--~Gq~V 365 (420)
T PRK14721 341 --SLGIALDAVIRRKLVLHYVT--NGQKV 365 (420)
T ss_pred --CccHHHHHHHHhCCCEEEEE--CCCCc
Confidence 22344566667788887774 45555
No 412
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=96.76 E-value=0.0046 Score=40.79 Aligned_cols=52 Identities=23% Similarity=0.231 Sum_probs=27.4
Q ss_pred CCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhh
Q 030225 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 53 (181)
Q Consensus 2 ~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 53 (181)
|+|||||.+.+...-.......+++.+.......-...-+++-+|-....++
T Consensus 35 GAGKTtf~rgi~~~Lg~~~~V~SPTFtlv~~Y~~~~~~lyH~DlYRl~d~ee 86 (149)
T COG0802 35 GAGKTTLVRGIAKGLGVDGNVKSPTFTLVEEYEEGRLPLYHFDLYRLSDPEE 86 (149)
T ss_pred cCChHHHHHHHHHHcCCCCcccCCCeeeehhhcCCCCcEEEEeeeccCChHH
Confidence 8999999999876544322222222222111111233456677776665443
No 413
>PRK10867 signal recognition particle protein; Provisional
Probab=96.69 E-value=0.011 Score=46.20 Aligned_cols=87 Identities=13% Similarity=0.028 Sum_probs=46.8
Q ss_pred EEEEEEEeCCChhhhhc----cchhh--ccCCcEEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccc
Q 030225 40 TIKFDIWDTAGQERYHS----LAPMY--YRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 113 (181)
Q Consensus 40 ~~~~~i~D~~G~~~~~~----~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~ 113 (181)
.+.+.|+||+|...... ....+ .-..+.+++|+|+.... +.......+.... ...-+|.||.|.....
T Consensus 183 ~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq---~av~~a~~F~~~~---~i~giIlTKlD~~~rg 256 (433)
T PRK10867 183 GYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQ---DAVNTAKAFNEAL---GLTGVILTKLDGDARG 256 (433)
T ss_pred CCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHH---HHHHHHHHHHhhC---CCCEEEEeCccCcccc
Confidence 35689999999532111 10111 12567889999987532 2223333333221 2345677999953211
Q ss_pred cCCHHHHHHHHHHcCCeEEEEec
Q 030225 114 KVKNEEGELYAQENGLSFLETSA 136 (181)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~Sa 136 (181)
-.+.......++|+.+++.
T Consensus 257 ----G~alsi~~~~~~PI~fig~ 275 (433)
T PRK10867 257 ----GAALSIRAVTGKPIKFIGT 275 (433)
T ss_pred ----cHHHHHHHHHCcCEEEEeC
Confidence 1245556667788766643
No 414
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=96.66 E-value=0.0038 Score=47.66 Aligned_cols=108 Identities=19% Similarity=0.178 Sum_probs=68.0
Q ss_pred eEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChh---HHHHH--HHHHHHHHHhCCCCceEEEEEeCCCCcc--
Q 030225 39 VTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMD---SFERA--KKWVQELQRQGNPNLIMFLVANKVDLEE-- 111 (181)
Q Consensus 39 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~--~~~~~~~~~~~~~~~p~ivi~nK~D~~~-- 111 (181)
..-+|.+.|.|||..|....-.-..+||+.++|+++.-.+ .|+.- .+.-.++..- ..-...++++||.|-..
T Consensus 155 e~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt-~gv~~lVv~vNKMddPtvn 233 (501)
T KOG0459|consen 155 ENKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT-AGVKHLIVLINKMDDPTVN 233 (501)
T ss_pred cceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHh-hccceEEEEEEeccCCccC
Confidence 3447899999999988887766778899999999985422 23221 1111222221 23445778899999632
Q ss_pred cc----cCCHHHHHHHHHHcC------CeEEEEecCCCCCHHHHHH
Q 030225 112 KR----KVKNEEGELYAQENG------LSFLETSAKSAHNVNELFY 147 (181)
Q Consensus 112 ~~----~~~~~~~~~~~~~~~------~~~~~~Sa~~~~gi~~~~~ 147 (181)
.. +-..+....|.+..| ..++++|..+|.++++..+
T Consensus 234 Ws~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~ 279 (501)
T KOG0459|consen 234 WSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD 279 (501)
T ss_pred cchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence 11 111233444555443 4689999999999987664
No 415
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.64 E-value=0.016 Score=45.36 Aligned_cols=91 Identities=18% Similarity=0.135 Sum_probs=50.6
Q ss_pred EEEEEEEeCCChhhhh----ccchhhcc---CCcEEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccc
Q 030225 40 TIKFDIWDTAGQERYH----SLAPMYYR---GAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEK 112 (181)
Q Consensus 40 ~~~~~i~D~~G~~~~~----~~~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~ 112 (181)
.+.+.|+|++|..... .....++. ...-.++|++++-. ...+...+..+... .+.-+|.||.|...
T Consensus 299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~--~~~l~~~~~~f~~~----~~~~vI~TKlDet~- 371 (424)
T PRK05703 299 DCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTK--YEDLKDIYKHFSRL----PLDGLIFTKLDETS- 371 (424)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCC--HHHHHHHHHHhCCC----CCCEEEEecccccc-
Confidence 3578999999964322 11223333 23466778887632 22222322233211 13457789999632
Q ss_pred ccCCHHHHHHHHHHcCCeEEEEecCCCCCH
Q 030225 113 RKVKNEEGELYAQENGLSFLETSAKSAHNV 142 (181)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 142 (181)
..-.+..++...++|+.+++ +|.+|
T Consensus 372 ---~~G~i~~~~~~~~lPv~yit--~Gq~V 396 (424)
T PRK05703 372 ---SLGSILSLLIESGLPISYLT--NGQRV 396 (424)
T ss_pred ---cccHHHHHHHHHCCCEEEEe--CCCCC
Confidence 22346677777888887774 45554
No 416
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.61 E-value=0.033 Score=38.23 Aligned_cols=80 Identities=18% Similarity=0.148 Sum_probs=41.1
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEE--eCC-ChhhhhccchhhccCCcEEEEE--EECC
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIW--DTA-GQERYHSLAPMYYRGAAAAVVV--YDIT 75 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~--D~~-G~~~~~~~~~~~~~~~d~~i~v--~d~~ 75 (181)
+|+|||||++.+.+... ++.|. +.+++..+.+..- +.+ |+...-.+...++.+.+++++= ...-
T Consensus 34 nGsGKSTLl~~l~Gl~~-----p~~G~------i~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lllLDEPts~L 102 (177)
T cd03222 34 NGTGKTTAVKILAGQLI-----PNGDN------DEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLFDEPSAYL 102 (177)
T ss_pred CCChHHHHHHHHHcCCC-----CCCcE------EEECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccC
Confidence 58999999998886532 22221 1122222111111 133 3444445667778888866662 1122
Q ss_pred ChhHHHHHHHHHHHHH
Q 030225 76 SMDSFERAKKWVQELQ 91 (181)
Q Consensus 76 ~~~s~~~~~~~~~~~~ 91 (181)
|+.+...+..++..+.
T Consensus 103 D~~~~~~l~~~l~~~~ 118 (177)
T cd03222 103 DIEQRLNAARAIRRLS 118 (177)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 4455555556665553
No 417
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.51 E-value=0.0095 Score=38.79 Aligned_cols=17 Identities=41% Similarity=0.661 Sum_probs=14.1
Q ss_pred CCCchhHHHHHHhhCCC
Q 030225 1 MGTGKTSLVLRFVKGQF 17 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~ 17 (181)
.|+|||||++.+...-.
T Consensus 31 lGaGKTtl~~~l~~~lg 47 (133)
T TIGR00150 31 LGAGKTTLVQGLLQGLG 47 (133)
T ss_pred CCCCHHHHHHHHHHHcC
Confidence 58999999999987543
No 418
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=96.48 E-value=0.0045 Score=42.08 Aligned_cols=127 Identities=20% Similarity=0.255 Sum_probs=57.4
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeC-CCh----------------------hhhhcc
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDT-AGQ----------------------ERYHSL 57 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~-~G~----------------------~~~~~~ 57 (181)
||+|||||+++++..--.. ..+.-| +.+....-++...-|.+.|. .|. +.+...
T Consensus 8 pG~GKTTll~k~i~~l~~~-~~~v~G--f~t~evr~~g~r~GF~iv~l~~g~~~~la~~~~~~~~~vgky~v~~e~fe~~ 84 (168)
T PF03266_consen 8 PGVGKTTLLKKVIEELKKK-GLPVGG--FYTEEVRENGRRIGFDIVDLNSGEEAILARVDFRSGPRVGKYFVDLESFEEI 84 (168)
T ss_dssp TTSSHHHHHHHHHHHHHHT-CGGEEE--EEEEEEETTSSEEEEEEEET-TS-EEEEEETTSS-SCECTTCEE-HHHHHCC
T ss_pred CCCCHHHHHHHHHHHhhcc-CCccce--EEeecccCCCceEEEEEEECcCCCccccccccccccccCCCEEEcHHHHHHH
Confidence 7999999999988532110 112223 22333334444445555555 321 111111
Q ss_pred ----chhhccCCcEEEEEEECCChhHHHH-HHHHHHHHHHhCCCCceEEEEEeCC-CCcccccCCHHHHHHHHHHcCCeE
Q 030225 58 ----APMYYRGAAAAVVVYDITSMDSFER-AKKWVQELQRQGNPNLIMFLVANKV-DLEEKRKVKNEEGELYAQENGLSF 131 (181)
Q Consensus 58 ----~~~~~~~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~p~ivi~nK~-D~~~~~~~~~~~~~~~~~~~~~~~ 131 (181)
....+.++| ++++|--- .++. ...|.+.+...-..++|++.++.+. +. .-...+.+..++.+
T Consensus 85 ~~~~L~~~~~~~~--liviDEIG--~mEl~~~~F~~~v~~~l~s~~~vi~vv~~~~~~--------~~l~~i~~~~~~~i 152 (168)
T PF03266_consen 85 GLPALRNALSSSD--LIVIDEIG--KMELKSPGFREAVEKLLDSNKPVIGVVHKRSDN--------PFLEEIKRRPDVKI 152 (168)
T ss_dssp CCCCCHHHHHCCH--EEEE---S--TTCCC-CHHHHHHHHHHCTTSEEEEE--SS--S--------CCHHHHHTTTTSEE
T ss_pred HHHHHHhhcCCCC--EEEEeccc--hhhhcCHHHHHHHHHHHcCCCcEEEEEecCCCc--------HHHHHHHhCCCcEE
Confidence 122224566 66667332 1111 1233344444333567888877665 21 12344455557888
Q ss_pred EEEecCCCCCH
Q 030225 132 LETSAKSAHNV 142 (181)
Q Consensus 132 ~~~Sa~~~~gi 142 (181)
++++..+-+-+
T Consensus 153 ~~vt~~NRd~l 163 (168)
T PF03266_consen 153 FEVTEENRDAL 163 (168)
T ss_dssp EE--TTTCCCH
T ss_pred EEeChhHHhhH
Confidence 88876665544
No 419
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.48 E-value=0.04 Score=42.66 Aligned_cols=91 Identities=12% Similarity=0.043 Sum_probs=50.5
Q ss_pred EEEEEEeCCChhhhhcc----chhhc--cCCcEEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccc
Q 030225 41 IKFDIWDTAGQERYHSL----APMYY--RGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRK 114 (181)
Q Consensus 41 ~~~~i~D~~G~~~~~~~----~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~ 114 (181)
+.+.|+||+|....... ...++ ...+.+++|+|++-. ...+..++..+.. -..-=+|+||.|...
T Consensus 321 ~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk--~~d~~~i~~~F~~----~~idglI~TKLDET~--- 391 (436)
T PRK11889 321 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK--SKDMIEIITNFKD----IHIDGIVFTKFDETA--- 391 (436)
T ss_pred CCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccC--hHHHHHHHHHhcC----CCCCEEEEEcccCCC---
Confidence 57899999996432211 12222 235678889987632 2223333333322 234567789999643
Q ss_pred CCHHHHHHHHHHcCCeEEEEecCCCCCHH
Q 030225 115 VKNEEGELYAQENGLSFLETSAKSAHNVN 143 (181)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 143 (181)
..-.+...+...++|+.+++ +|+++.
T Consensus 392 -k~G~iLni~~~~~lPIsyit--~GQ~VP 417 (436)
T PRK11889 392 -SSGELLKIPAVSSAPIVLMT--DGQDVK 417 (436)
T ss_pred -CccHHHHHHHHHCcCEEEEe--CCCCCC
Confidence 12234566667788876663 344443
No 420
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.46 E-value=0.041 Score=43.70 Aligned_cols=90 Identities=14% Similarity=0.070 Sum_probs=47.6
Q ss_pred EEEEEEeCCChhhhhc---cchhhccC---CcEEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccc
Q 030225 41 IKFDIWDTAGQERYHS---LAPMYYRG---AAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRK 114 (181)
Q Consensus 41 ~~~~i~D~~G~~~~~~---~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~ 114 (181)
..+.++|++|...... .....+.. ..-.++|+|.+-.. ..+......+ . .....-+|+||.|...
T Consensus 335 ~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~--~~l~~i~~~f---~-~~~~~g~IlTKlDet~--- 405 (484)
T PRK06995 335 KHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHG--DTLNEVVQAY---R-GPGLAGCILTKLDEAA--- 405 (484)
T ss_pred CCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcH--HHHHHHHHHh---c-cCCCCEEEEeCCCCcc---
Confidence 3578999999432221 11112222 22367888887322 2222222222 1 2234566789999532
Q ss_pred CCHHHHHHHHHHcCCeEEEEecCCCCCH
Q 030225 115 VKNEEGELYAQENGLSFLETSAKSAHNV 142 (181)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 142 (181)
..-.+..+....++++.+++ +|++|
T Consensus 406 -~~G~~l~i~~~~~lPI~yvt--~GQ~V 430 (484)
T PRK06995 406 -SLGGALDVVIRYKLPLHYVS--NGQRV 430 (484)
T ss_pred -cchHHHHHHHHHCCCeEEEe--cCCCC
Confidence 22345666777788887773 56666
No 421
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=96.44 E-value=0.0014 Score=44.77 Aligned_cols=16 Identities=31% Similarity=0.599 Sum_probs=14.5
Q ss_pred CCCchhHHHHHHhhCC
Q 030225 1 MGTGKTSLVLRFVKGQ 16 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~ 16 (181)
||||||||+++|+...
T Consensus 13 SG~GKsTl~k~L~~~~ 28 (191)
T COG0194 13 SGVGKSTLVKALLEDD 28 (191)
T ss_pred CCCCHHHHHHHHHhhc
Confidence 7999999999999766
No 422
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=96.43 E-value=0.0071 Score=47.53 Aligned_cols=78 Identities=21% Similarity=0.237 Sum_probs=51.7
Q ss_pred hhccchhhccCCcEEEEEEECCChhHHH--HHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeE
Q 030225 54 YHSLAPMYYRGAAAAVVVYDITSMDSFE--RAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSF 131 (181)
Q Consensus 54 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 131 (181)
++.+|. .+...|+++.++|+.++--|. .+..++..+ .+.+..++++||.||....++ ..-..|....++++
T Consensus 165 WRQLWR-VlErSDivvqIVDARnPllfr~~dLe~Yvke~----d~~K~~~LLvNKaDLl~~~qr--~aWa~YF~~~ni~~ 237 (562)
T KOG1424|consen 165 WRQLWR-VLERSDIVVQIVDARNPLLFRSPDLEDYVKEV----DPSKANVLLVNKADLLPPEQR--VAWAEYFRQNNIPV 237 (562)
T ss_pred HHHHHH-HHhhcceEEEEeecCCccccCChhHHHHHhcc----ccccceEEEEehhhcCCHHHH--HHHHHHHHhcCceE
Confidence 445554 457899999999999875442 234444443 345678899999999542221 12234566678999
Q ss_pred EEEecCC
Q 030225 132 LETSAKS 138 (181)
Q Consensus 132 ~~~Sa~~ 138 (181)
++-||..
T Consensus 238 vf~SA~~ 244 (562)
T KOG1424|consen 238 VFFSALA 244 (562)
T ss_pred EEEeccc
Confidence 9999886
No 423
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=96.43 E-value=0.0039 Score=45.99 Aligned_cols=50 Identities=16% Similarity=0.135 Sum_probs=30.5
Q ss_pred CCCchhHHHHHHhhCCC----CCccccceeeeEEEEE-EEECCeEEEEEEEeCCCh
Q 030225 1 MGTGKTSLVLRFVKGQF----FDFQESTIGAAFFTQV-LSLNEVTIKFDIWDTAGQ 51 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~----~~~~~~t~~~~~~~~~-~~~~~~~~~~~i~D~~G~ 51 (181)
||+|||||+|++..... ....-.-.|+++.... +.+.+.. .+.+.||||-
T Consensus 152 PNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp-~vy~iDTPGi 206 (335)
T KOG2485|consen 152 PNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRP-PVYLIDTPGI 206 (335)
T ss_pred CCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCC-ceEEecCCCc
Confidence 89999999999865322 1222233344444443 4444444 3679999994
No 424
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.37 E-value=0.031 Score=36.19 Aligned_cols=16 Identities=38% Similarity=0.445 Sum_probs=14.0
Q ss_pred CCCchhHHHHHHhhCC
Q 030225 1 MGTGKTSLVLRFVKGQ 16 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~ 16 (181)
||+|||+|++.+...-
T Consensus 28 ~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 28 PGTGKTTLARAIANEL 43 (151)
T ss_pred CCCCHHHHHHHHHHHh
Confidence 7999999999998654
No 425
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.36 E-value=0.029 Score=46.84 Aligned_cols=92 Identities=12% Similarity=0.089 Sum_probs=50.0
Q ss_pred EEEEEEeCCChhhhh----ccchhh--ccCCcEEEEEEECCCh-hHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccc
Q 030225 41 IKFDIWDTAGQERYH----SLAPMY--YRGAAAAVVVYDITSM-DSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 113 (181)
Q Consensus 41 ~~~~i~D~~G~~~~~----~~~~~~--~~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~ 113 (181)
..+.|+||+|..... ...... ....+-.++|+|++-. +.+.++. ..+.... .-.+.=+|+||.|...
T Consensus 264 ~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~---~~f~~~~-~~~i~glIlTKLDEt~-- 337 (767)
T PRK14723 264 KHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVV---HAYRHGA-GEDVDGCIITKLDEAT-- 337 (767)
T ss_pred CCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHH---HHHhhcc-cCCCCEEEEeccCCCC--
Confidence 468899999943211 111111 2235567889998742 3343332 2232211 0124567789999643
Q ss_pred cCCHHHHHHHHHHcCCeEEEEecCCCCCH
Q 030225 114 KVKNEEGELYAQENGLSFLETSAKSAHNV 142 (181)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 142 (181)
..=.+..+....++|+.+++ +|++|
T Consensus 338 --~~G~iL~i~~~~~lPI~yit--~GQ~V 362 (767)
T PRK14723 338 --HLGPALDTVIRHRLPVHYVS--TGQKV 362 (767)
T ss_pred --CccHHHHHHHHHCCCeEEEe--cCCCC
Confidence 12234556667788887774 45555
No 426
>KOG3929 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.35 E-value=0.0011 Score=47.62 Aligned_cols=150 Identities=15% Similarity=0.165 Sum_probs=74.7
Q ss_pred CCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECC--eEEEEEEEeCCChhhhhccch-----hhccCCcEEEEEEEC
Q 030225 2 GTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNE--VTIKFDIWDTAGQERYHSLAP-----MYYRGAAAAVVVYDI 74 (181)
Q Consensus 2 ~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~~~~i~D~~G~~~~~~~~~-----~~~~~~d~~i~v~d~ 74 (181)
|-||||++++.+...-.+ ..++....|..-. ...+ .+--.++|+.+|......+.. .-++. -.+|++.|+
T Consensus 53 n~~~tt~I~~~FdR~e~~-~~ptlaLEYtygR-R~~g~~~kdiaN~WELGgg~~~~~LLsVPit~~~l~~-~slIL~LDl 129 (363)
T KOG3929|consen 53 NGGKTTIILRCFDRDEPP-KPPTLALEYTYGR-RAKGHNPKDIANFWELGGGTSLLDLLSVPITGDTLRT-FSLILVLDL 129 (363)
T ss_pred CCceeEeehhhcCcccCC-CCCceeeeeehhh-hccCCCchhHHHHHHhcCCccHHHHhcCcccccchhh-hhheeeeec
Confidence 457888988877654333 2244433321111 1122 233468999998654333221 12222 357888999
Q ss_pred CChhH-HHHHHHHHHHHHHh-------------------------------------CCCCceEEEEEeCCCCcccccCC
Q 030225 75 TSMDS-FERAKKWVQELQRQ-------------------------------------GNPNLIMFLVANKVDLEEKRKVK 116 (181)
Q Consensus 75 ~~~~s-~~~~~~~~~~~~~~-------------------------------------~~~~~p~ivi~nK~D~~~~~~~~ 116 (181)
++++. |..+...++.++.+ ..-..|++||+.|.|.-..-+..
T Consensus 130 s~p~~~W~t~E~~~~~~R~~vd~~~~~~~k~~~~L~E~mrqR~~~rvgqd~~d~e~~dP~P~PV~IVgsKYDvFq~Fese 209 (363)
T KOG3929|consen 130 SKPNDLWPTMENLLQATRSHVDKVIMKLGKTNAKLVEEMRQRIWNRVGQDHPDHELIDPFPVPVVIVGSKYDVFQDFESE 209 (363)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhcccCCCchhhcCCCCCceEEeccchhhhccccHH
Confidence 98764 33232222221100 01148999999999964322211
Q ss_pred H-----HHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHH
Q 030225 117 N-----EEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLA 154 (181)
Q Consensus 117 ~-----~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~ 154 (181)
. .-.+..+-.+|..++..|++-..=.+-+.+.+.+...
T Consensus 210 kRkH~C~~LRf~Ah~yGaaLlmfSskMe~l~K~~r~~i~HlaF 252 (363)
T KOG3929|consen 210 KRKHICKTLRFVAHYYGAALLMFSSKMEALLKKIRGVINHLAF 252 (363)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHhhHHHhhc
Confidence 1 1122334445666677777754433444444444333
No 427
>PHA02518 ParA-like protein; Provisional
Probab=96.29 E-value=0.032 Score=39.05 Aligned_cols=67 Identities=13% Similarity=0.077 Sum_probs=40.8
Q ss_pred EEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCCh--hHHHHHHHHHHHHHHhCCCCce-EEEEEeCCCC
Q 030225 40 TIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSM--DSFERAKKWVQELQRQGNPNLI-MFLVANKVDL 109 (181)
Q Consensus 40 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~p-~ivi~nK~D~ 109 (181)
.+.+.|+|+||.. .......+..+|.+|++...+.. .....+..++..+.... ...| ..++.|+.+.
T Consensus 76 ~~d~viiD~p~~~--~~~~~~~l~~aD~viip~~ps~~~~~~~~~~~~~~~~~~~~~-~~~~~~~iv~n~~~~ 145 (211)
T PHA02518 76 GYDYVVVDGAPQD--SELARAALRIADMVLIPVQPSPFDIWAAPDLVELIKARQEVT-DGLPKFAFIISRAIK 145 (211)
T ss_pred cCCEEEEeCCCCc--cHHHHHHHHHCCEEEEEeCCChhhHHHHHHHHHHHHHHHhhC-CCCceEEEEEeccCC
Confidence 4678999999864 33456677889999999887632 22333444444433322 2333 4566677653
No 428
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.29 E-value=0.019 Score=44.60 Aligned_cols=86 Identities=16% Similarity=0.070 Sum_probs=46.1
Q ss_pred EEEEEEEeCCChhhhhc----cchhhcc-----CCcEEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCc
Q 030225 40 TIKFDIWDTAGQERYHS----LAPMYYR-----GAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLE 110 (181)
Q Consensus 40 ~~~~~i~D~~G~~~~~~----~~~~~~~-----~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~ 110 (181)
.+.+.++||+|...... .+..++. ...-.++|+|++-.. +.+....... ..-.+-=+|+||.|-.
T Consensus 299 ~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~--~~~~~~~~~f----~~~~~~glIlTKLDEt 372 (432)
T PRK12724 299 GSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSY--HHTLTVLKAY----ESLNYRRILLTKLDEA 372 (432)
T ss_pred CCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCH--HHHHHHHHHh----cCCCCCEEEEEcccCC
Confidence 45778999999642111 1122221 234678899988532 2222222222 1123456778999963
Q ss_pred ccccCCHHHHHHHHHHcCCeEEEEe
Q 030225 111 EKRKVKNEEGELYAQENGLSFLETS 135 (181)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~S 135 (181)
.. .-.+...+...++|+.+++
T Consensus 373 ~~----~G~il~i~~~~~lPI~ylt 393 (432)
T PRK12724 373 DF----LGSFLELADTYSKSFTYLS 393 (432)
T ss_pred CC----ccHHHHHHHHHCCCEEEEe
Confidence 21 1234555666788876664
No 429
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.16 E-value=0.033 Score=42.81 Aligned_cols=92 Identities=14% Similarity=0.116 Sum_probs=49.5
Q ss_pred EEEEEEEeCCChhhhhc----cchhhcc--CCcEEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccc
Q 030225 40 TIKFDIWDTAGQERYHS----LAPMYYR--GAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 113 (181)
Q Consensus 40 ~~~~~i~D~~G~~~~~~----~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~ 113 (181)
.+.+.|+||+|...... ....+.. ..+.+++|.+++ ....++...+... . .-.+--+|+||.|...
T Consensus 285 ~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag--~~~~d~~~i~~~f---~-~l~i~glI~TKLDET~-- 356 (407)
T PRK12726 285 CVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSG--MKSADVMTILPKL---A-EIPIDGFIITKMDETT-- 356 (407)
T ss_pred CCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCc--ccHHHHHHHHHhc---C-cCCCCEEEEEcccCCC--
Confidence 36789999999743221 1122222 346667777764 2223333332222 1 2234567789999632
Q ss_pred cCCHHHHHHHHHHcCCeEEEEecCCCCCHH
Q 030225 114 KVKNEEGELYAQENGLSFLETSAKSAHNVN 143 (181)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 143 (181)
..=.+...+...++|+.+++ +|++|.
T Consensus 357 --~~G~~Lsv~~~tglPIsylt--~GQ~Vp 382 (407)
T PRK12726 357 --RIGDLYTVMQETNLPVLYMT--DGQNIT 382 (407)
T ss_pred --CccHHHHHHHHHCCCEEEEe--cCCCCC
Confidence 22244556667788876664 344444
No 430
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=96.08 E-value=0.0041 Score=34.70 Aligned_cols=14 Identities=29% Similarity=0.465 Sum_probs=12.1
Q ss_pred CCCchhHHHHHHhh
Q 030225 1 MGTGKTSLVLRFVK 14 (181)
Q Consensus 1 ~~~GKttLl~~l~~ 14 (181)
+|||||||++++.-
T Consensus 32 nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 32 NGSGKSTLLDAIQT 45 (62)
T ss_pred CCCCHHHHHHHHHH
Confidence 58999999999864
No 431
>KOG2484 consensus GTPase [General function prediction only]
Probab=96.05 E-value=0.017 Score=44.08 Aligned_cols=76 Identities=18% Similarity=0.162 Sum_probs=46.8
Q ss_pred hhhccchhhccCCcEEEEEEECCChhHHH--HHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHH---HHc
Q 030225 53 RYHSLAPMYYRGAAAAVVVYDITSMDSFE--RAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYA---QEN 127 (181)
Q Consensus 53 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~---~~~ 127 (181)
.|.......+..+|++|.|.|+.||.+-. ++.+|+.. . ..++..|+|+||+|+.. .+....|. +..
T Consensus 135 aY~ke~rkvve~sDVVleVlDARDPlgtR~~~vE~~V~~--~--~gnKkLILVLNK~DLVP-----rEv~e~Wl~YLr~~ 205 (435)
T KOG2484|consen 135 AYDKEFRKVVEASDVVLEVLDARDPLGTRCPEVEEAVLQ--A--HGNKKLILVLNKIDLVP-----REVVEKWLVYLRRE 205 (435)
T ss_pred HHHHHHHHHHhhhheEEEeeeccCCCCCCChhHHHHHHh--c--cCCceEEEEeehhccCC-----HHHHHHHHHHHHhh
Confidence 44445556677899999999999987633 33333221 2 24588999999999944 34444443 333
Q ss_pred CCeEEEEecC
Q 030225 128 GLSFLETSAK 137 (181)
Q Consensus 128 ~~~~~~~Sa~ 137 (181)
+..+.+..+.
T Consensus 206 ~ptv~fkast 215 (435)
T KOG2484|consen 206 GPTVAFKAST 215 (435)
T ss_pred CCcceeeccc
Confidence 4444444433
No 432
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.03 E-value=0.057 Score=41.60 Aligned_cols=105 Identities=17% Similarity=0.124 Sum_probs=57.2
Q ss_pred EEEEEEEeCCChhhhhcc----chhhccC--CcEEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccc
Q 030225 40 TIKFDIWDTAGQERYHSL----APMYYRG--AAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 113 (181)
Q Consensus 40 ~~~~~i~D~~G~~~~~~~----~~~~~~~--~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~ 113 (181)
.+.+.++||.|...+... ...++.. ..-.-+|++++. ....+...+..+... ..--+|+||.|-..
T Consensus 281 ~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~--K~~dlkei~~~f~~~----~i~~~I~TKlDET~-- 352 (407)
T COG1419 281 DCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATT--KYEDLKEIIKQFSLF----PIDGLIFTKLDETT-- 352 (407)
T ss_pred cCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCc--chHHHHHHHHHhccC----CcceeEEEcccccC--
Confidence 457899999997544332 2333332 234455677763 334455555555332 23456789999532
Q ss_pred cCCHHHHHHHHHHcCCeEEEEecCCCCCHHH----H-HHHHHHHHHhh
Q 030225 114 KVKNEEGELYAQENGLSFLETSAKSAHNVNE----L-FYEIAKRLAEV 156 (181)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~----~-~~~l~~~~~~~ 156 (181)
..-.....+.+.+.|+.+++ +|.+|.+ . -.||++.+..-
T Consensus 353 --s~G~~~s~~~e~~~PV~YvT--~GQ~VPeDI~va~~~~Lv~~~~g~ 396 (407)
T COG1419 353 --SLGNLFSLMYETRLPVSYVT--NGQRVPEDIVVANPDYLVRRILGT 396 (407)
T ss_pred --chhHHHHHHHHhCCCeEEEe--CCCCCCchhhhcChHHHHHHHhcc
Confidence 33345556666777776663 3443322 1 24556555554
No 433
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=96.00 E-value=0.15 Score=36.42 Aligned_cols=62 Identities=29% Similarity=0.301 Sum_probs=39.3
Q ss_pred EEEEEeC-CChhhhhccchhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCC
Q 030225 42 KFDIWDT-AGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDL 109 (181)
Q Consensus 42 ~~~i~D~-~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~ 109 (181)
.+.++|| +|-+.|. +...+++|.+|.|.|.+ ..++...++..+...+. .-+++.+|+||.|-
T Consensus 135 e~VivDtEAGiEHfg---Rg~~~~vD~vivVvDpS-~~sl~taeri~~L~~el--g~k~i~~V~NKv~e 197 (255)
T COG3640 135 EVVIVDTEAGIEHFG---RGTIEGVDLVIVVVDPS-YKSLRTAERIKELAEEL--GIKRIFVVLNKVDE 197 (255)
T ss_pred cEEEEecccchhhhc---cccccCCCEEEEEeCCc-HHHHHHHHHHHHHHHHh--CCceEEEEEeeccc
Confidence 4555555 2333222 33467899999999987 35666555544433333 23789999999985
No 434
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.93 E-value=0.17 Score=39.15 Aligned_cols=91 Identities=12% Similarity=0.001 Sum_probs=51.1
Q ss_pred EEEEEEEeCCChhhhhc----cchhhccC---CcEEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccc
Q 030225 40 TIKFDIWDTAGQERYHS----LAPMYYRG---AAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEK 112 (181)
Q Consensus 40 ~~~~~i~D~~G~~~~~~----~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~ 112 (181)
.+.+.++||+|...... ....++.. ..-.++|.|++-. ...+...+.... .-.+-=+|+||.|-..
T Consensus 254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~--~~~~~~~~~~~~----~~~~~~~I~TKlDet~- 326 (388)
T PRK12723 254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK--TSDVKEIFHQFS----PFSYKTVIFTKLDETT- 326 (388)
T ss_pred CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC--HHHHHHHHHHhc----CCCCCEEEEEeccCCC-
Confidence 46789999999643221 11223332 2257889998854 233333333332 2234567789999533
Q ss_pred ccCCHHHHHHHHHHcCCeEEEEecCCCCCH
Q 030225 113 RKVKNEEGELYAQENGLSFLETSAKSAHNV 142 (181)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 142 (181)
..-.+..++...++|+.+++ +|+++
T Consensus 327 ---~~G~~l~~~~~~~~Pi~yit--~Gq~v 351 (388)
T PRK12723 327 ---CVGNLISLIYEMRKEVSYVT--DGQIV 351 (388)
T ss_pred ---cchHHHHHHHHHCCCEEEEe--CCCCC
Confidence 22234556666788876663 56666
No 435
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=95.89 E-value=0.0051 Score=39.09 Aligned_cols=15 Identities=27% Similarity=0.516 Sum_probs=13.3
Q ss_pred CCCchhHHHHHHhhC
Q 030225 1 MGTGKTSLVLRFVKG 15 (181)
Q Consensus 1 ~~~GKttLl~~l~~~ 15 (181)
|||||||+.+.|...
T Consensus 8 ~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 8 PGSGKSTLAKELAER 22 (121)
T ss_dssp TTSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 799999999999864
No 436
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.81 E-value=0.037 Score=42.35 Aligned_cols=52 Identities=15% Similarity=0.146 Sum_probs=31.7
Q ss_pred CeEEEEEEEeCCChhhhh-----ccch-hhccCCcEEEEEEECCChhHHHHHHHHHHH
Q 030225 38 EVTIKFDIWDTAGQERYH-----SLAP-MYYRGAAAAVVVYDITSMDSFERAKKWVQE 89 (181)
Q Consensus 38 ~~~~~~~i~D~~G~~~~~-----~~~~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~ 89 (181)
..++.+.|.||+|..... -+.. .-.-..|-+|||.|++-...-+..-+-++.
T Consensus 181 ke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aFk~ 238 (483)
T KOG0780|consen 181 KENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAFKE 238 (483)
T ss_pred hcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHHHH
Confidence 456889999999953211 1110 112358999999999876554444333333
No 437
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.63 E-value=0.008 Score=34.35 Aligned_cols=15 Identities=20% Similarity=0.541 Sum_probs=13.2
Q ss_pred CCCchhHHHHHHhhC
Q 030225 1 MGTGKTSLVLRFVKG 15 (181)
Q Consensus 1 ~~~GKttLl~~l~~~ 15 (181)
|||||||+.++|...
T Consensus 8 ~gsGKst~~~~l~~~ 22 (69)
T cd02019 8 SGSGKSTVAKKLAEQ 22 (69)
T ss_pred CCCCHHHHHHHHHHH
Confidence 799999999988854
No 438
>COG3911 Predicted ATPase [General function prediction only]
Probab=95.59 E-value=0.0089 Score=39.50 Aligned_cols=19 Identities=32% Similarity=0.555 Sum_probs=16.3
Q ss_pred CCCchhHHHHHHhhCCCCC
Q 030225 1 MGTGKTSLVLRFVKGQFFD 19 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~ 19 (181)
||+||||||+.|-...+..
T Consensus 18 pGaGKTtLL~aLa~~Gfat 36 (183)
T COG3911 18 PGAGKTTLLAALARAGFAT 36 (183)
T ss_pred CCCcHHHHHHHHHHcCcee
Confidence 8999999999998877643
No 439
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.57 E-value=0.02 Score=41.82 Aligned_cols=50 Identities=26% Similarity=0.292 Sum_probs=32.6
Q ss_pred CCCchhHHHHHHhhCCCCCcc----ccceeeeEEEEEEEECCeEEEEEEEeCCC
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQ----ESTIGAAFFTQVLSLNEVTIKFDIWDTAG 50 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~~~i~D~~G 50 (181)
.|-|||||++.|++.++..+. .|++.....+..+.-.+..+++.+.||.|
T Consensus 51 Tg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvG 104 (406)
T KOG3859|consen 51 TGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVG 104 (406)
T ss_pred CCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecc
Confidence 478999999999987764332 23444333333333345567789999998
No 440
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.54 E-value=0.13 Score=33.88 Aligned_cols=58 Identities=16% Similarity=0.279 Sum_probs=31.2
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEe-CC-ChhhhhccchhhccCCcEEEE
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWD-TA-GQERYHSLAPMYYRGAAAAVV 70 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D-~~-G~~~~~~~~~~~~~~~d~~i~ 70 (181)
+|+|||||++.+.+... +..|. +.+++. ..+.+.- .+ |+...-.+...++.+++++++
T Consensus 35 nGsGKStLl~~l~G~~~-----~~~G~------i~~~~~-~~i~~~~~lS~G~~~rv~laral~~~p~illl 94 (144)
T cd03221 35 NGAGKSTLLKLIAGELE-----PDEGI------VTWGST-VKIGYFEQLSGGEKMRLALAKLLLENPNLLLL 94 (144)
T ss_pred CCCCHHHHHHHHcCCCC-----CCceE------EEECCe-EEEEEEccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 58999999999887542 22221 122222 1222211 33 333444456777778876665
No 441
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=95.48 E-value=0.15 Score=37.92 Aligned_cols=41 Identities=17% Similarity=0.207 Sum_probs=23.8
Q ss_pred CcEEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCC
Q 030225 65 AAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVD 108 (181)
Q Consensus 65 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D 108 (181)
.+.+.+++|+.+.+.+......+..+... +.++.++.-..+
T Consensus 55 ~~~~av~iD~r~~~~~~~~~~~~~~L~~~---g~~~~iI~L~a~ 95 (288)
T PRK05416 55 IRKVAVVIDVRSRPFFDDLPEALDELRER---GIDVRVLFLDAS 95 (288)
T ss_pred CCCeEEEEccCchhhHHHHHHHHHHHHHc---CCcEEEEEEECC
Confidence 35678888988765445566666666554 233333444444
No 442
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.48 E-value=0.0084 Score=38.32 Aligned_cols=15 Identities=27% Similarity=0.512 Sum_probs=13.2
Q ss_pred CCCchhHHHHHHhhC
Q 030225 1 MGTGKTSLVLRFVKG 15 (181)
Q Consensus 1 ~~~GKttLl~~l~~~ 15 (181)
||||||||++.|...
T Consensus 7 ~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 7 PGSGKTTIAKELAER 21 (129)
T ss_dssp TTSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 799999999998755
No 443
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.47 E-value=0.0089 Score=39.12 Aligned_cols=15 Identities=40% Similarity=0.656 Sum_probs=13.1
Q ss_pred CCCchhHHHHHHhhC
Q 030225 1 MGTGKTSLVLRFVKG 15 (181)
Q Consensus 1 ~~~GKttLl~~l~~~ 15 (181)
||||||||++.|...
T Consensus 8 pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 8 PGSGKSTLAKRLAKR 22 (143)
T ss_dssp TTSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 899999999998743
No 444
>PRK14737 gmk guanylate kinase; Provisional
Probab=95.29 E-value=0.0099 Score=41.13 Aligned_cols=16 Identities=19% Similarity=0.557 Sum_probs=14.0
Q ss_pred CCCchhHHHHHHhhCC
Q 030225 1 MGTGKTSLVLRFVKGQ 16 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~ 16 (181)
||||||||+++|+...
T Consensus 13 sG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 13 AGGGKSTIIQALLEEH 28 (186)
T ss_pred CCCCHHHHHHHHHhcC
Confidence 7999999999998653
No 445
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=95.23 E-value=0.17 Score=39.07 Aligned_cols=88 Identities=18% Similarity=0.196 Sum_probs=53.1
Q ss_pred ccCCcEEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHH----cCCeEEEEecC
Q 030225 62 YRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQE----NGLSFLETSAK 137 (181)
Q Consensus 62 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~----~~~~~~~~Sa~ 137 (181)
+...|++|-|+|+.||-.-. -..+........+++..++|+||+||...+ ....|.+. +.--.|..|..
T Consensus 211 iDSSDVvvqVlDARDPmGTr--c~~ve~ylkke~phKHli~vLNKvDLVPtw-----vt~~Wv~~lSkeyPTiAfHAsi~ 283 (572)
T KOG2423|consen 211 IDSSDVVVQVLDARDPMGTR--CKHVEEYLKKEKPHKHLIYVLNKVDLVPTW-----VTAKWVRHLSKEYPTIAFHASIN 283 (572)
T ss_pred hcccceeEEeeeccCCcccc--cHHHHHHHhhcCCcceeEEEeeccccccHH-----HHHHHHHHHhhhCcceeeehhhc
Confidence 55689999999999864311 123333344445889999999999995422 23344333 33334666766
Q ss_pred CCCCHHHHHHHHHHHHHhhC
Q 030225 138 SAHNVNELFYEIAKRLAEVN 157 (181)
Q Consensus 138 ~~~gi~~~~~~l~~~~~~~~ 157 (181)
+..|=-.+++.|.+ +...+
T Consensus 284 nsfGKgalI~llRQ-f~kLh 302 (572)
T KOG2423|consen 284 NSFGKGALIQLLRQ-FAKLH 302 (572)
T ss_pred CccchhHHHHHHHH-HHhhc
Confidence 66775555554433 33444
No 446
>PRK01889 GTPase RsgA; Reviewed
Probab=95.11 E-value=0.018 Score=43.98 Aligned_cols=16 Identities=31% Similarity=0.530 Sum_probs=14.0
Q ss_pred CCCchhHHHHHHhhCC
Q 030225 1 MGTGKTSLVLRFVKGQ 16 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~ 16 (181)
||+|||||+|.|.+..
T Consensus 204 sgvGKStLin~L~g~~ 219 (356)
T PRK01889 204 SGVGKSTLVNALLGEE 219 (356)
T ss_pred CCccHHHHHHHHHHhc
Confidence 7999999999998744
No 447
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=95.08 E-value=0.36 Score=35.33 Aligned_cols=79 Identities=23% Similarity=0.270 Sum_probs=52.1
Q ss_pred EEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHH
Q 030225 42 KFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGE 121 (181)
Q Consensus 42 ~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~ 121 (181)
++.|+|+|..- .-..-..+.++|.+|+|--.+ +..+.++++.++.+... +.|..+|+||.++.. .+.+
T Consensus 165 ~~~IIDsaaG~--gCpVi~sl~~aD~ai~VTEPT-p~glhD~kr~~el~~~f---~ip~~iViNr~~~g~------s~ie 232 (284)
T COG1149 165 DLLIIDSAAGT--GCPVIASLKGADLAILVTEPT-PFGLHDLKRALELVEHF---GIPTGIVINRYNLGD------SEIE 232 (284)
T ss_pred ceeEEecCCCC--CChHHHhhccCCEEEEEecCC-ccchhHHHHHHHHHHHh---CCceEEEEecCCCCc------hHHH
Confidence 45566665321 111234578899999997776 34566666766666554 789999999996532 1567
Q ss_pred HHHHHcCCeEE
Q 030225 122 LYAQENGLSFL 132 (181)
Q Consensus 122 ~~~~~~~~~~~ 132 (181)
+++.+.+++++
T Consensus 233 ~~~~e~gi~il 243 (284)
T COG1149 233 EYCEEEGIPIL 243 (284)
T ss_pred HHHHHcCCCee
Confidence 88888887654
No 448
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=95.06 E-value=0.0047 Score=47.16 Aligned_cols=72 Identities=17% Similarity=0.168 Sum_probs=41.1
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhh--hccchhhccCCcEEEEEEECCChh
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERY--HSLAPMYYRGAAAAVVVYDITSMD 78 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~--~~~~~~~~~~~d~~i~v~d~~~~~ 78 (181)
||+||||++|.|-..+....- |..|.+-....+.. .-++-++||||-.-- .......+ -+++-|=.+.+++
T Consensus 316 PNvGKSSiINTLR~KkVCkvA-PIpGETKVWQYItL---mkrIfLIDcPGvVyps~dset~ivL---kGvVRVenv~~pe 388 (572)
T KOG2423|consen 316 PNVGKSSIINTLRKKKVCKVA-PIPGETKVWQYITL---MKRIFLIDCPGVVYPSSDSETDIVL---KGVVRVENVKNPE 388 (572)
T ss_pred CCCchHHHHHHHhhccccccc-CCCCcchHHHHHHH---HhceeEecCCCccCCCCCchHHHHh---hceeeeeecCCHH
Confidence 899999999999887764322 33332211111111 125679999996422 23334444 3556777777765
Q ss_pred H
Q 030225 79 S 79 (181)
Q Consensus 79 s 79 (181)
.
T Consensus 389 ~ 389 (572)
T KOG2423|consen 389 D 389 (572)
T ss_pred H
Confidence 4
No 449
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=94.97 E-value=0.015 Score=37.80 Aligned_cols=16 Identities=25% Similarity=0.351 Sum_probs=13.6
Q ss_pred CCCchhHHHHHHhhCC
Q 030225 1 MGTGKTSLVLRFVKGQ 16 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~ 16 (181)
+|+|||||++.+.+..
T Consensus 20 nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 20 NGSGKSTLLKALAGLL 35 (137)
T ss_dssp TTSSHHHHHHHHTTSS
T ss_pred CCCccccceeeecccc
Confidence 5899999999888654
No 450
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=94.91 E-value=0.015 Score=39.63 Aligned_cols=15 Identities=40% Similarity=0.731 Sum_probs=13.3
Q ss_pred CCCchhHHHHHHhhC
Q 030225 1 MGTGKTSLVLRFVKG 15 (181)
Q Consensus 1 ~~~GKttLl~~l~~~ 15 (181)
+|||||||+++++..
T Consensus 15 sgsGKTTLi~~li~~ 29 (173)
T PRK10751 15 SGTGKTTLLKKLIPA 29 (173)
T ss_pred CCChHHHHHHHHHHH
Confidence 699999999999865
No 451
>PF14331 ImcF-related_N: ImcF-related N-terminal domain
Probab=94.90 E-value=0.13 Score=37.76 Aligned_cols=94 Identities=20% Similarity=0.232 Sum_probs=52.7
Q ss_pred cCCcEEEEEEECCCh-----h--HHH----HHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHH--HHHHHHcCC
Q 030225 63 RGAAAAVVVYDITSM-----D--SFE----RAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEG--ELYAQENGL 129 (181)
Q Consensus 63 ~~~d~~i~v~d~~~~-----~--s~~----~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~--~~~~~~~~~ 129 (181)
+..+++|+++|+.+- + .+. .++.-+..+...-.-..|+.+++||+|+...-....... ....+-+|+
T Consensus 24 ~PlnGvil~vs~~~Ll~~~~~~r~l~~~a~~lR~rL~el~~~lg~~~PVYvv~Tk~D~l~GF~ef~~~L~~~~r~q~lG~ 103 (266)
T PF14331_consen 24 QPLNGVILTVSVDDLLNADEAERELEALARALRQRLEELQRTLGVRLPVYVVFTKCDLLPGFDEFFSDLSEEEREQVLGF 103 (266)
T ss_pred CCCCEEEEEEEHHHHhcCChhhhHHHHHHHHHHHHHHHHHHHhCCCCCeEeeeECCCcccCHHHHHHhCCHHHHhCCccc
Confidence 346999999998742 1 111 233344445555557899999999999865322111111 111223455
Q ss_pred eEEEEecCCCCC---HHHHHHHHHHHHHhh
Q 030225 130 SFLETSAKSAHN---VNELFYEIAKRLAEV 156 (181)
Q Consensus 130 ~~~~~Sa~~~~g---i~~~~~~l~~~~~~~ 156 (181)
.+-.-....... +.+.|+.|...+...
T Consensus 104 t~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 133 (266)
T PF14331_consen 104 TFPYDEDADGDAWAWFDEEFDELVARLNAR 133 (266)
T ss_pred ccCCccccccchHHHHHHHHHHHHHHHHHH
Confidence 433333344444 777777777766654
No 452
>PRK08233 hypothetical protein; Provisional
Probab=94.90 E-value=0.016 Score=39.57 Aligned_cols=15 Identities=40% Similarity=0.563 Sum_probs=13.2
Q ss_pred CCCchhHHHHHHhhC
Q 030225 1 MGTGKTSLVLRFVKG 15 (181)
Q Consensus 1 ~~~GKttLl~~l~~~ 15 (181)
||||||||.++|...
T Consensus 12 ~GsGKtTla~~L~~~ 26 (182)
T PRK08233 12 SGGGKTTLTERLTHK 26 (182)
T ss_pred CCCCHHHHHHHHHhh
Confidence 799999999999753
No 453
>PRK04195 replication factor C large subunit; Provisional
Probab=94.84 E-value=0.58 Score=37.48 Aligned_cols=16 Identities=38% Similarity=0.451 Sum_probs=13.9
Q ss_pred CCCchhHHHHHHhhCC
Q 030225 1 MGTGKTSLVLRFVKGQ 16 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~ 16 (181)
||+||||+++.+...-
T Consensus 48 pG~GKTtla~ala~el 63 (482)
T PRK04195 48 PGVGKTSLAHALANDY 63 (482)
T ss_pred CCCCHHHHHHHHHHHc
Confidence 7999999999997654
No 454
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=94.83 E-value=0.016 Score=41.19 Aligned_cols=16 Identities=25% Similarity=0.297 Sum_probs=13.2
Q ss_pred CCCchhHHHHHHhhCC
Q 030225 1 MGTGKTSLVLRFVKGQ 16 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~ 16 (181)
|||||||||+-+-+-.
T Consensus 40 SGSGKSTLLniig~ld 55 (226)
T COG1136 40 SGSGKSTLLNLLGGLD 55 (226)
T ss_pred CCCCHHHHHHHHhccc
Confidence 7999999999876544
No 455
>PRK14738 gmk guanylate kinase; Provisional
Probab=94.76 E-value=0.016 Score=40.69 Aligned_cols=25 Identities=8% Similarity=0.230 Sum_probs=17.6
Q ss_pred eEEEEecCCCCCHHHHHHHHHHHHHhh
Q 030225 130 SFLETSAKSAHNVNELFYEIAKRLAEV 156 (181)
Q Consensus 130 ~~~~~Sa~~~~gi~~~~~~l~~~~~~~ 156 (181)
.++.+++- ..++++.+.+.+.+.+.
T Consensus 171 ~~~iId~~--~~~e~v~~~i~~~l~~~ 195 (206)
T PRK14738 171 DYVVVNPE--DRLDEAVAQIMAIISAE 195 (206)
T ss_pred CEEEECCC--CCHHHHHHHHHHHHHHH
Confidence 45555543 36889999888888765
No 456
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=94.75 E-value=0.12 Score=39.05 Aligned_cols=16 Identities=31% Similarity=0.457 Sum_probs=13.9
Q ss_pred CCCchhHHHHHHhhCC
Q 030225 1 MGTGKTSLVLRFVKGQ 16 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~ 16 (181)
+|||||||++.|+..-
T Consensus 153 tGSGKTTll~aL~~~i 168 (323)
T PRK13833 153 TGSGKTTLANAVIAEI 168 (323)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 6999999999998654
No 457
>PRK07261 topology modulation protein; Provisional
Probab=94.70 E-value=0.019 Score=39.07 Aligned_cols=15 Identities=27% Similarity=0.561 Sum_probs=13.0
Q ss_pred CCCchhHHHHHHhhC
Q 030225 1 MGTGKTSLVLRFVKG 15 (181)
Q Consensus 1 ~~~GKttLl~~l~~~ 15 (181)
||||||||.+.|...
T Consensus 9 ~GsGKSTla~~l~~~ 23 (171)
T PRK07261 9 SGSGKSTLARKLSQH 23 (171)
T ss_pred CCCCHHHHHHHHHHH
Confidence 799999999998753
No 458
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.63 E-value=0.02 Score=41.10 Aligned_cols=15 Identities=27% Similarity=0.324 Sum_probs=13.0
Q ss_pred CCCchhHHHHHHhhC
Q 030225 1 MGTGKTSLVLRFVKG 15 (181)
Q Consensus 1 ~~~GKttLl~~l~~~ 15 (181)
||||||||+|.+.+-
T Consensus 38 SGcGKSTLLriiAGL 52 (248)
T COG1116 38 SGCGKSTLLRLIAGL 52 (248)
T ss_pred CCCCHHHHHHHHhCC
Confidence 799999999988763
No 459
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=94.62 E-value=0.021 Score=35.72 Aligned_cols=13 Identities=46% Similarity=0.787 Sum_probs=11.7
Q ss_pred CCCchhHHHHHHh
Q 030225 1 MGTGKTSLVLRFV 13 (181)
Q Consensus 1 ~~~GKttLl~~l~ 13 (181)
||+|||||++.+.
T Consensus 24 SGsGKSTLl~~l~ 36 (107)
T cd00820 24 SGIGKTELALELI 36 (107)
T ss_pred CCCCHHHHHHHhh
Confidence 6999999999876
No 460
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=94.58 E-value=0.027 Score=36.87 Aligned_cols=15 Identities=33% Similarity=0.680 Sum_probs=13.3
Q ss_pred CCCchhHHHHHHhhC
Q 030225 1 MGTGKTSLVLRFVKG 15 (181)
Q Consensus 1 ~~~GKttLl~~l~~~ 15 (181)
+|||||||++.|...
T Consensus 8 sGsGKstl~~~L~~~ 22 (137)
T cd00071 8 SGVGKSTLLKRLLEE 22 (137)
T ss_pred CCCCHHHHHHHHHhc
Confidence 699999999999864
No 461
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=94.56 E-value=0.023 Score=36.44 Aligned_cols=19 Identities=26% Similarity=0.238 Sum_probs=15.4
Q ss_pred CCCchhHHHHHHhhCCCCC
Q 030225 1 MGTGKTSLVLRFVKGQFFD 19 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~ 19 (181)
||+||||+++.+...-...
T Consensus 11 ~G~GKTtl~~~l~~~~~~~ 29 (148)
T smart00382 11 PGSGKTTLARALARELGPP 29 (148)
T ss_pred CCCcHHHHHHHHHhccCCC
Confidence 7999999999998665433
No 462
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.56 E-value=0.26 Score=34.71 Aligned_cols=110 Identities=14% Similarity=0.210 Sum_probs=56.0
Q ss_pred CCCchhHHHHHHhh---CCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChh---hhhc-----cchhhccCCcEEE
Q 030225 1 MGTGKTSLVLRFVK---GQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE---RYHS-----LAPMYYRGAAAAV 69 (181)
Q Consensus 1 ~~~GKttLl~~l~~---~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~---~~~~-----~~~~~~~~~d~~i 69 (181)
|||||||+.+-|.. ++... ++ ....+.....+||-.-.- .|+. .........+-.+
T Consensus 10 PgsGKTtfakeLak~L~~~i~~----vi---------~l~kdy~~~i~~DEslpi~ke~yres~~ks~~rlldSalkn~~ 76 (261)
T COG4088 10 PGSGKTTFAKELAKELRQEIWR----VI---------HLEKDYLRGILWDESLPILKEVYRESFLKSVERLLDSALKNYL 76 (261)
T ss_pred CCCCchHHHHHHHHHHHHhhhh----cc---------ccchhhhhheecccccchHHHHHHHHHHHHHHHHHHHHhcceE
Confidence 89999999887753 22111 11 111112234567765421 1111 1112222334456
Q ss_pred EEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCc--------ccccCCHHHHHHHHHHc
Q 030225 70 VVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLE--------EKRKVKNEEGELYAQEN 127 (181)
Q Consensus 70 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~--------~~~~~~~~~~~~~~~~~ 127 (181)
+.+|.++ -+...++.+...... ..++..+|-.++-+. .....+.+...++...+
T Consensus 77 VIvDdtN--YyksmRrqL~ceak~--~~tt~ciIyl~~plDtc~rrN~ergepip~Evl~qly~Rf 138 (261)
T COG4088 77 VIVDDTN--YYKSMRRQLACEAKE--RKTTWCIIYLRTPLDTCLRRNRERGEPIPEEVLRQLYDRF 138 (261)
T ss_pred EEEeccc--HHHHHHHHHHHHHHh--cCCceEEEEEccCHHHHHHhhccCCCCCCHHHHHHHHHhh
Confidence 6667664 344444444444333 467888887777652 23456666666666654
No 463
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=94.54 E-value=0.022 Score=38.90 Aligned_cols=15 Identities=27% Similarity=0.255 Sum_probs=13.3
Q ss_pred CCCchhHHHHHHhhC
Q 030225 1 MGTGKTSLVLRFVKG 15 (181)
Q Consensus 1 ~~~GKttLl~~l~~~ 15 (181)
||||||||++.|...
T Consensus 10 sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 10 SGAGKDTLLDYARAR 24 (179)
T ss_pred CCCCHHHHHHHHHHH
Confidence 799999999998764
No 464
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.52 E-value=0.022 Score=39.62 Aligned_cols=15 Identities=27% Similarity=0.541 Sum_probs=13.2
Q ss_pred CCCchhHHHHHHhhC
Q 030225 1 MGTGKTSLVLRFVKG 15 (181)
Q Consensus 1 ~~~GKttLl~~l~~~ 15 (181)
||||||||++.|.+.
T Consensus 8 ~GsGKSTl~~~l~~~ 22 (198)
T cd02023 8 SGSGKTTVAEEIIEQ 22 (198)
T ss_pred CCCCHHHHHHHHHHH
Confidence 799999999998764
No 465
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.52 E-value=0.021 Score=40.20 Aligned_cols=24 Identities=25% Similarity=0.123 Sum_probs=19.9
Q ss_pred EEecCCCCCHHHHHHHHHHHHHhh
Q 030225 133 ETSAKSAHNVNELFYEIAKRLAEV 156 (181)
Q Consensus 133 ~~Sa~~~~gi~~~~~~l~~~~~~~ 156 (181)
.+||++.+-+.|+++.+.+.+.+-
T Consensus 163 PTSALDPElv~EVL~vm~~LA~eG 186 (240)
T COG1126 163 PTSALDPELVGEVLDVMKDLAEEG 186 (240)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcC
Confidence 679999999999999888876653
No 466
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.49 E-value=0.023 Score=39.95 Aligned_cols=15 Identities=27% Similarity=0.512 Sum_probs=13.1
Q ss_pred CCCchhHHHHHHhhC
Q 030225 1 MGTGKTSLVLRFVKG 15 (181)
Q Consensus 1 ~~~GKttLl~~l~~~ 15 (181)
||||||||++.|.+.
T Consensus 15 sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 15 SGSGKTTVARKIYEQ 29 (207)
T ss_pred CCCCHHHHHHHHHHH
Confidence 699999999999753
No 467
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=94.48 E-value=0.023 Score=40.41 Aligned_cols=15 Identities=13% Similarity=0.118 Sum_probs=13.0
Q ss_pred CCCchhHHHHHHhhC
Q 030225 1 MGTGKTSLVLRFVKG 15 (181)
Q Consensus 1 ~~~GKttLl~~l~~~ 15 (181)
||||||||++.|.+.
T Consensus 8 sGSGKTTla~~L~~~ 22 (220)
T cd02025 8 VAVGKSTTARVLQAL 22 (220)
T ss_pred CCCCHHHHHHHHHHH
Confidence 699999999988753
No 468
>PF05879 RHD3: Root hair defective 3 GTP-binding protein (RHD3); InterPro: IPR008803 This family consists of several eukaryotic root hair defective 3 like GTP-binding proteins. It has been speculated that the RHD3 protein is a member of a novel class of GTP-binding proteins that is widespread in eukaryotes and required for regulated cell enlargement []. The family also contains the homologous Saccharomyces cerevisiae synthetic construct enhancement of YOP1 (SEY1) protein which is involved in membrane trafficking [].; GO: 0016817 hydrolase activity, acting on acid anhydrides
Probab=94.47 E-value=0.085 Score=44.35 Aligned_cols=20 Identities=25% Similarity=0.381 Sum_probs=17.3
Q ss_pred CCchhHHHHHHhhCCCCCcc
Q 030225 2 GTGKTSLVLRFVKGQFFDFQ 21 (181)
Q Consensus 2 ~~GKttLl~~l~~~~~~~~~ 21 (181)
++|||||||.|++..|....
T Consensus 5 ssgkstlln~lf~t~f~~m~ 24 (742)
T PF05879_consen 5 SSGKSTLLNHLFGTQFDVMD 24 (742)
T ss_pred CCcHHHHHHHHHCCCccccc
Confidence 68999999999998887643
No 469
>PRK08118 topology modulation protein; Reviewed
Probab=94.45 E-value=0.024 Score=38.46 Aligned_cols=15 Identities=27% Similarity=0.437 Sum_probs=13.2
Q ss_pred CCCchhHHHHHHhhC
Q 030225 1 MGTGKTSLVLRFVKG 15 (181)
Q Consensus 1 ~~~GKttLl~~l~~~ 15 (181)
||||||||.++|...
T Consensus 10 ~GsGKSTlak~L~~~ 24 (167)
T PRK08118 10 GGSGKSTLARQLGEK 24 (167)
T ss_pred CCCCHHHHHHHHHHH
Confidence 799999999998854
No 470
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=94.37 E-value=0.022 Score=38.36 Aligned_cols=15 Identities=33% Similarity=0.417 Sum_probs=13.4
Q ss_pred CCCchhHHHHHHhhC
Q 030225 1 MGTGKTSLVLRFVKG 15 (181)
Q Consensus 1 ~~~GKttLl~~l~~~ 15 (181)
|++|||||++.|...
T Consensus 8 ~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 8 PSTGKTTLIEALAAR 22 (163)
T ss_dssp TTSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHc
Confidence 689999999999865
No 471
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=94.37 E-value=0.023 Score=38.24 Aligned_cols=14 Identities=36% Similarity=0.700 Sum_probs=12.3
Q ss_pred CCCchhHHHHHHhh
Q 030225 1 MGTGKTSLVLRFVK 14 (181)
Q Consensus 1 ~~~GKttLl~~l~~ 14 (181)
+|||||||+.++..
T Consensus 11 k~SGKTTLie~lv~ 24 (161)
T COG1763 11 KNSGKTTLIEKLVR 24 (161)
T ss_pred CCCChhhHHHHHHH
Confidence 58999999999964
No 472
>PTZ00293 thymidine kinase; Provisional
Probab=94.33 E-value=0.38 Score=33.96 Aligned_cols=42 Identities=10% Similarity=0.126 Sum_probs=25.6
Q ss_pred cCCcEEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcc
Q 030225 63 RGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEE 111 (181)
Q Consensus 63 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~ 111 (181)
.+.|+ +.+| +..-|..+..+...+.. .++|+++.|...|-..
T Consensus 76 ~~~dv--I~ID--EaQFf~~i~~~~~~l~~---~g~~VivaGLd~Df~~ 117 (211)
T PTZ00293 76 KNYDV--IAID--EGQFFPDLVEFSEAAAN---LGKIVIVAALDGTFQR 117 (211)
T ss_pred cCCCE--EEEE--chHhhHhHHHHHHHHHH---CCCeEEEEecCccccc
Confidence 44553 4455 33445555556555543 5789999998888544
No 473
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=94.32 E-value=0.19 Score=35.10 Aligned_cols=16 Identities=19% Similarity=0.382 Sum_probs=13.5
Q ss_pred CCCchhHHHHHHhhCC
Q 030225 1 MGTGKTSLVLRFVKGQ 16 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~ 16 (181)
+||||||+++.++..-
T Consensus 10 tGSGKTTll~~ll~~~ 25 (198)
T cd01131 10 TGSGKSTTLAAMIDYI 25 (198)
T ss_pred CCCCHHHHHHHHHHHh
Confidence 6999999999987654
No 474
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=94.28 E-value=0.22 Score=37.02 Aligned_cols=47 Identities=13% Similarity=0.270 Sum_probs=28.8
Q ss_pred hhccCCcEEEEEEECCC---hhHHHHHHHHHHHHHHhC-CCCceEEEEEeC
Q 030225 60 MYYRGAAAAVVVYDITS---MDSFERAKKWVQELQRQG-NPNLIMFLVANK 106 (181)
Q Consensus 60 ~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~-~~~~p~ivi~nK 106 (181)
..++...+=++++|--. ..+....+..++.++..+ ....|++.+|++
T Consensus 139 ~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~ 189 (302)
T PF05621_consen 139 RLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTR 189 (302)
T ss_pred HHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccH
Confidence 45677788888988442 123344444555554433 267899999875
No 475
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=94.28 E-value=0.038 Score=39.45 Aligned_cols=67 Identities=15% Similarity=0.095 Sum_probs=36.1
Q ss_pred EEEEEEeCCChhhhhcc----c--hhhccCCcEEEEEEECC------ChhHHHH-HHHHHHHHHHhCCCCceEEEEEeCC
Q 030225 41 IKFDIWDTAGQERYHSL----A--PMYYRGAAAAVVVYDIT------SMDSFER-AKKWVQELQRQGNPNLIMFLVANKV 107 (181)
Q Consensus 41 ~~~~i~D~~G~~~~~~~----~--~~~~~~~d~~i~v~d~~------~~~s~~~-~~~~~~~~~~~~~~~~p~ivi~nK~ 107 (181)
-+..+.|+||+.+.... + -.+++.-+.-+.++.+. ||..|-. +..-+..+.. -..|-+=++.|+
T Consensus 97 ~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~lL~sl~tMl~---melphVNvlSK~ 173 (290)
T KOG1533|consen 97 DHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISSLLVSLATMLH---MELPHVNVLSKA 173 (290)
T ss_pred CcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHHHHHHHHHHHHh---hcccchhhhhHh
Confidence 35779999998653221 1 12233455444444433 4555443 2222222322 356788888999
Q ss_pred CCc
Q 030225 108 DLE 110 (181)
Q Consensus 108 D~~ 110 (181)
|+.
T Consensus 174 Dl~ 176 (290)
T KOG1533|consen 174 DLL 176 (290)
T ss_pred HHH
Confidence 973
No 476
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=94.23 E-value=0.028 Score=38.80 Aligned_cols=21 Identities=5% Similarity=-0.029 Sum_probs=15.9
Q ss_pred CCCCHHHHHHHHHHHHHhhCC
Q 030225 138 SAHNVNELFYEIAKRLAEVNP 158 (181)
Q Consensus 138 ~~~gi~~~~~~l~~~~~~~~~ 158 (181)
+...++++.+.+...+...++
T Consensus 159 ~~~s~ee~~~~i~~~l~~~~~ 179 (186)
T PRK10078 159 NDGSLRQSVDTLLTLLHLSQK 179 (186)
T ss_pred CCCCHHHHHHHHHHHHhhcCc
Confidence 444699999999888876654
No 477
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=94.22 E-value=0.031 Score=36.79 Aligned_cols=15 Identities=27% Similarity=0.600 Sum_probs=13.0
Q ss_pred CCCchhHHHHHHhhC
Q 030225 1 MGTGKTSLVLRFVKG 15 (181)
Q Consensus 1 ~~~GKttLl~~l~~~ 15 (181)
+|||||||++.|+..
T Consensus 9 ~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 9 KNSGKTTLIRKLINE 23 (140)
T ss_dssp TTSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 589999999999864
No 478
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=94.21 E-value=0.24 Score=36.32 Aligned_cols=16 Identities=25% Similarity=0.393 Sum_probs=13.7
Q ss_pred CCCchhHHHHHHhhCC
Q 030225 1 MGTGKTSLVLRFVKGQ 16 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~ 16 (181)
+||||||+++.++..-
T Consensus 89 tGSGKTT~l~all~~i 104 (264)
T cd01129 89 TGSGKTTTLYSALSEL 104 (264)
T ss_pred CCCcHHHHHHHHHhhh
Confidence 5999999999988654
No 479
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=94.21 E-value=0.031 Score=35.87 Aligned_cols=16 Identities=38% Similarity=0.654 Sum_probs=13.9
Q ss_pred CCCchhHHHHHHhhCC
Q 030225 1 MGTGKTSLVLRFVKGQ 16 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~ 16 (181)
||+|||++++++....
T Consensus 13 ~G~GKT~~~~~~~~~~ 28 (131)
T PF13401_consen 13 PGSGKTTLIKRLARQL 28 (131)
T ss_dssp TTSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHh
Confidence 7999999999998654
No 480
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.17 E-value=0.029 Score=38.51 Aligned_cols=14 Identities=29% Similarity=0.472 Sum_probs=12.6
Q ss_pred CCCchhHHHHHHhh
Q 030225 1 MGTGKTSLVLRFVK 14 (181)
Q Consensus 1 ~~~GKttLl~~l~~ 14 (181)
|||||||++++|..
T Consensus 12 ~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 12 PGSGKGTQCEKIVE 25 (188)
T ss_pred CCCCHHHHHHHHHH
Confidence 79999999999973
No 481
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=94.12 E-value=0.3 Score=37.80 Aligned_cols=15 Identities=40% Similarity=0.530 Sum_probs=13.3
Q ss_pred CCCchhHHHHHHhhC
Q 030225 1 MGTGKTSLVLRFVKG 15 (181)
Q Consensus 1 ~~~GKttLl~~l~~~ 15 (181)
||+|||++++.+...
T Consensus 64 ~GtGKT~l~~~v~~~ 78 (394)
T PRK00411 64 PGTGKTTTVKKVFEE 78 (394)
T ss_pred CCCCHHHHHHHHHHH
Confidence 799999999999864
No 482
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=94.11 E-value=0.034 Score=35.63 Aligned_cols=16 Identities=38% Similarity=0.414 Sum_probs=13.9
Q ss_pred CCCchhHHHHHHhhCC
Q 030225 1 MGTGKTSLVLRFVKGQ 16 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~ 16 (181)
||+|||+|++.+...-
T Consensus 7 ~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 7 PGTGKTTLARALAQYL 22 (132)
T ss_dssp TTSSHHHHHHHHHHHT
T ss_pred CCCCeeHHHHHHHhhc
Confidence 7999999999988654
No 483
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=94.11 E-value=0.031 Score=38.58 Aligned_cols=16 Identities=31% Similarity=0.414 Sum_probs=13.6
Q ss_pred CCCchhHHHHHHhhCC
Q 030225 1 MGTGKTSLVLRFVKGQ 16 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~ 16 (181)
+|||||||++.+++.-
T Consensus 34 tGSGKTTll~aL~~~i 49 (186)
T cd01130 34 TGSGKTTLLNALLAFI 49 (186)
T ss_pred CCCCHHHHHHHHHhhc
Confidence 6999999999988643
No 484
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=94.10 E-value=0.18 Score=38.40 Aligned_cols=16 Identities=25% Similarity=0.513 Sum_probs=13.8
Q ss_pred CCCchhHHHHHHhhCC
Q 030225 1 MGTGKTSLVLRFVKGQ 16 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~ 16 (181)
+|||||||++.|++.-
T Consensus 171 tGSGKTTll~aLl~~i 186 (344)
T PRK13851 171 TGSGKTTMSKTLISAI 186 (344)
T ss_pred CCccHHHHHHHHHccc
Confidence 5999999999998654
No 485
>PRK05480 uridine/cytidine kinase; Provisional
Probab=94.08 E-value=0.032 Score=39.24 Aligned_cols=15 Identities=27% Similarity=0.454 Sum_probs=13.1
Q ss_pred CCCchhHHHHHHhhC
Q 030225 1 MGTGKTSLVLRFVKG 15 (181)
Q Consensus 1 ~~~GKttLl~~l~~~ 15 (181)
||||||||++.|...
T Consensus 15 sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 15 SGSGKTTVASTIYEE 29 (209)
T ss_pred CCCCHHHHHHHHHHH
Confidence 799999999998764
No 486
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=94.06 E-value=0.033 Score=37.65 Aligned_cols=16 Identities=19% Similarity=0.366 Sum_probs=13.6
Q ss_pred CCCchhHHHHHHhhCC
Q 030225 1 MGTGKTSLVLRFVKGQ 16 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~ 16 (181)
||||||||++.|.+.-
T Consensus 4 sGsGKSTla~~la~~l 19 (163)
T PRK11545 4 SGSGKSAVASEVAHQL 19 (163)
T ss_pred CCCcHHHHHHHHHHHh
Confidence 7999999999887654
No 487
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=94.05 E-value=0.034 Score=37.96 Aligned_cols=14 Identities=43% Similarity=0.679 Sum_probs=12.5
Q ss_pred CCCchhHHHHHHhh
Q 030225 1 MGTGKTSLVLRFVK 14 (181)
Q Consensus 1 ~~~GKttLl~~l~~ 14 (181)
||+|||+|++++..
T Consensus 33 ~G~GKT~ll~~~~~ 46 (185)
T PF13191_consen 33 SGSGKTSLLRALLD 46 (185)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 79999999998874
No 488
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=94.03 E-value=0.79 Score=37.02 Aligned_cols=72 Identities=14% Similarity=0.202 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEe--cCCCCCHHHHHHHHHHHHHh
Q 030225 79 SFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETS--AKSAHNVNELFYEIAKRLAE 155 (181)
Q Consensus 79 s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S--a~~~~gi~~~~~~l~~~~~~ 155 (181)
.+.++.+.++.++.. +.|++|++||.|.....+ .+..++++.+.++++..+. +.=|+|-.++-+.+++.+.+
T Consensus 357 Gl~NL~RHIenvr~F---GvPvVVAINKFd~DTe~E--i~~I~~~c~e~Gv~va~~~~~~~Gg~Gai~LA~aVveA~~~ 430 (557)
T PRK13505 357 GFANLERHIENIRKF---GVPVVVAINKFVTDTDAE--IAALKELCEELGVEVALSEVWAKGGEGGVELAEKVVELIEE 430 (557)
T ss_pred HHHHHHHHHHHHHHc---CCCEEEEEeCCCCCCHHH--HHHHHHHHHHcCCCEEEecccccCCcchHHHHHHHHHHHhc
Confidence 456677777777654 789999999999744222 3456789999999876443 44578888888888887763
No 489
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=93.98 E-value=0.14 Score=38.65 Aligned_cols=19 Identities=32% Similarity=0.242 Sum_probs=15.2
Q ss_pred CCCchhHHHHHHhhCCCCC
Q 030225 1 MGTGKTSLVLRFVKGQFFD 19 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~ 19 (181)
.|||||||+|.|+......
T Consensus 182 TGSGKTTlLNal~~~i~~~ 200 (355)
T COG4962 182 TGSGKTTLLNALSGFIDSD 200 (355)
T ss_pred CCCCHHHHHHHHHhcCCCc
Confidence 4899999999999765433
No 490
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=93.96 E-value=0.036 Score=38.53 Aligned_cols=14 Identities=43% Similarity=0.733 Sum_probs=12.4
Q ss_pred CCCchhHHHHHHhh
Q 030225 1 MGTGKTSLVLRFVK 14 (181)
Q Consensus 1 ~~~GKttLl~~l~~ 14 (181)
||||||||.++|..
T Consensus 8 sgSGKTTla~~L~~ 21 (194)
T PF00485_consen 8 SGSGKTTLAKRLAQ 21 (194)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 79999999999864
No 491
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=93.96 E-value=0.034 Score=38.10 Aligned_cols=14 Identities=36% Similarity=0.449 Sum_probs=12.0
Q ss_pred CCCchhHHHHHHhh
Q 030225 1 MGTGKTSLVLRFVK 14 (181)
Q Consensus 1 ~~~GKttLl~~l~~ 14 (181)
+|+|||||++.+..
T Consensus 30 nG~GKSTLl~~il~ 43 (176)
T cd03238 30 SGSGKSTLVNEGLY 43 (176)
T ss_pred CCCCHHHHHHHHhh
Confidence 59999999998863
No 492
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=93.95 E-value=0.033 Score=39.35 Aligned_cols=16 Identities=25% Similarity=0.293 Sum_probs=13.7
Q ss_pred CCCchhHHHHHHhhCC
Q 030225 1 MGTGKTSLVLRFVKGQ 16 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~ 16 (181)
+|+|||||++.+.+..
T Consensus 39 nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 39 SGSGKSTLLNILGGLD 54 (218)
T ss_pred CCCCHHHHHHHHhCCc
Confidence 5899999999998653
No 493
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=93.94 E-value=0.034 Score=39.10 Aligned_cols=16 Identities=25% Similarity=0.268 Sum_probs=13.6
Q ss_pred CCCchhHHHHHHhhCC
Q 030225 1 MGTGKTSLVLRFVKGQ 16 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~ 16 (181)
+|+|||||++.+.+..
T Consensus 36 nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 36 NGSGKSTLLRLLNGLL 51 (211)
T ss_pred CCCCHHHHHHHHhcCC
Confidence 5999999999988653
No 494
>PTZ00301 uridine kinase; Provisional
Probab=93.93 E-value=0.035 Score=39.19 Aligned_cols=14 Identities=43% Similarity=0.636 Sum_probs=11.9
Q ss_pred CCCchhHHHHHHhh
Q 030225 1 MGTGKTSLVLRFVK 14 (181)
Q Consensus 1 ~~~GKttLl~~l~~ 14 (181)
||||||||.++|..
T Consensus 12 SgSGKTTla~~l~~ 25 (210)
T PTZ00301 12 SGSGKSSLSTNIVS 25 (210)
T ss_pred CcCCHHHHHHHHHH
Confidence 79999999987753
No 495
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=93.90 E-value=0.2 Score=37.81 Aligned_cols=15 Identities=40% Similarity=0.649 Sum_probs=13.5
Q ss_pred CCCchhHHHHHHhhC
Q 030225 1 MGTGKTSLVLRFVKG 15 (181)
Q Consensus 1 ~~~GKttLl~~l~~~ 15 (181)
+|||||||++.|+..
T Consensus 157 tGSGKTTll~aL~~~ 171 (319)
T PRK13894 157 TGSGKTTLVNAIINE 171 (319)
T ss_pred CCCCHHHHHHHHHHh
Confidence 699999999999964
No 496
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=93.90 E-value=0.68 Score=33.21 Aligned_cols=66 Identities=12% Similarity=0.153 Sum_probs=42.8
Q ss_pred EEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCc
Q 030225 42 KFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLE 110 (181)
Q Consensus 42 ~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~ 110 (181)
.+.++|+|+.. .......+..+|.++++...+ ..++..+.+.+..+........+..++.|+.|..
T Consensus 116 D~viiD~pp~~--~~~~~~~l~~ad~vii~~~~~-~~s~~~~~~~~~~l~~~~~~~~~~~iv~n~~~~~ 181 (246)
T TIGR03371 116 DWVLIDVPRGP--SPITRQALAAADLVLVVVNAD-AACYATLHQQALALFAGSGPRIGPHFLINQFDPA 181 (246)
T ss_pred CEEEEECCCCc--hHHHHHHHHhCCeEEEEeCCC-HHHHHHHHHHHHHHhhcccccccceEEeeccCcc
Confidence 68899999853 334456678899999999874 4555555533333333222344577889998853
No 497
>PRK04040 adenylate kinase; Provisional
Probab=93.90 E-value=0.037 Score=38.39 Aligned_cols=15 Identities=27% Similarity=0.465 Sum_probs=13.1
Q ss_pred CCCchhHHHHHHhhC
Q 030225 1 MGTGKTSLVLRFVKG 15 (181)
Q Consensus 1 ~~~GKttLl~~l~~~ 15 (181)
|||||||+++.|...
T Consensus 11 pG~GKtt~~~~l~~~ 25 (188)
T PRK04040 11 PGVGKTTVLNKALEK 25 (188)
T ss_pred CCCCHHHHHHHHHHH
Confidence 899999999988654
No 498
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=93.90 E-value=0.26 Score=34.75 Aligned_cols=114 Identities=16% Similarity=0.184 Sum_probs=58.3
Q ss_pred EEEEEeCCChhhhhc---cchhh---ccC---CcEEEEEEECCC-hhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcc
Q 030225 42 KFDIWDTAGQERYHS---LAPMY---YRG---AAAAVVVYDITS-MDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEE 111 (181)
Q Consensus 42 ~~~i~D~~G~~~~~~---~~~~~---~~~---~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~ 111 (181)
.+.+.|+||+-+... ..+.. +++ .-.++|+.|..= -++...+-..+..+..-.....|.+-|.+|.|+..
T Consensus 99 dylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi~lE~P~INvlsKMDLlk 178 (273)
T KOG1534|consen 99 DYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMISLEVPHINVLSKMDLLK 178 (273)
T ss_pred CEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHHHhcCcchhhhhHHHHhh
Confidence 467999999843221 11111 111 124455555331 12222222333333222224788999999999843
Q ss_pred ccc-----------------------CC--H----HHHHHHHHHcC-CeEEEEecCCCCCHHHHHHHHHHHHHh
Q 030225 112 KRK-----------------------VK--N----EEGELYAQENG-LSFLETSAKSAHNVNELFYEIAKRLAE 155 (181)
Q Consensus 112 ~~~-----------------------~~--~----~~~~~~~~~~~-~~~~~~Sa~~~~gi~~~~~~l~~~~~~ 155 (181)
... .+ . .....+..+++ +.++.....+.+.++.++..|-.+++=
T Consensus 179 ~~~k~~l~~Fl~~d~~~l~~~~~~~~~s~Kf~~L~~~i~~~v~d~~Mv~FlPl~~~~eeSi~~iL~~ID~aiQy 252 (273)
T KOG1534|consen 179 DKNKKELERFLNPDEYLLLEDSEINLRSPKFKKLTKCIAQLVDDYSMVNFLPLDSSDEESINIILSYIDDAIQY 252 (273)
T ss_pred hhhHHHHHHhcCCchhhhhcccccccccHHHHHHHHHHHHHhccccceeeeecCCCCHHHHHHHHHHHHHHHHh
Confidence 210 00 0 01112233344 357888888888898888887766543
No 499
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=93.87 E-value=0.035 Score=38.36 Aligned_cols=16 Identities=31% Similarity=0.436 Sum_probs=13.4
Q ss_pred CCCchhHHHHHHhhCC
Q 030225 1 MGTGKTSLVLRFVKGQ 16 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~ 16 (181)
+|+|||||++.+.+..
T Consensus 27 nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 27 NGAGKSTLLLHLNGLL 42 (190)
T ss_pred CCCCHHHHHHHHhCCC
Confidence 5999999999887643
No 500
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=93.87 E-value=0.088 Score=35.85 Aligned_cols=16 Identities=25% Similarity=0.268 Sum_probs=13.5
Q ss_pred CCCchhHHHHHHhhCC
Q 030225 1 MGTGKTSLVLRFVKGQ 16 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~ 16 (181)
||+|||||++.+..--
T Consensus 38 SG~GKStllk~va~Li 53 (223)
T COG4619 38 SGCGKSTLLKIVASLI 53 (223)
T ss_pred CCccHHHHHHHHHhcc
Confidence 6999999999887543
Done!