Query 030225
Match_columns 181
No_of_seqs 119 out of 1630
Neff 10.6
Searched_HMMs 29240
Date Mon Mar 25 16:53:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030225.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030225hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 100.0 2.9E-44 1E-48 252.4 18.2 181 1-181 22-208 (216)
2 2bcg_Y Protein YP2, GTP-bindin 100.0 3.2E-37 1.1E-41 215.4 22.0 158 1-158 17-174 (206)
3 1vg8_A RAS-related protein RAB 100.0 1.7E-36 5.7E-41 211.7 17.6 180 1-181 17-207 (207)
4 3cpj_B GTP-binding protein YPT 100.0 7E-36 2.4E-40 211.1 19.6 159 1-159 22-180 (223)
5 2bov_A RAla, RAS-related prote 100.0 2.7E-35 9.2E-40 205.4 19.6 155 1-156 23-178 (206)
6 2hup_A RAS-related protein RAB 100.0 4.1E-35 1.4E-39 204.2 20.3 158 1-158 38-196 (201)
7 2ew1_A RAS-related protein RAB 100.0 6.1E-35 2.1E-39 203.3 20.2 157 1-157 35-191 (201)
8 3tkl_A RAS-related protein RAB 100.0 1.4E-34 4.7E-39 200.3 21.8 161 1-161 25-185 (196)
9 2a5j_A RAS-related protein RAB 100.0 1.5E-34 5E-39 199.7 21.3 157 1-157 30-186 (191)
10 2efe_B Small GTP-binding prote 100.0 1E-34 3.6E-39 198.5 20.3 157 1-157 21-177 (181)
11 2fu5_C RAS-related protein RAB 100.0 3.3E-35 1.1E-39 201.5 17.8 157 1-157 17-173 (183)
12 2gf9_A RAS-related protein RAB 100.0 2.4E-34 8.4E-39 198.3 21.3 156 1-156 31-186 (189)
13 1z0f_A RAB14, member RAS oncog 100.0 1.8E-34 6E-39 196.9 20.2 155 1-155 24-178 (179)
14 1r2q_A RAS-related protein RAB 100.0 1.6E-34 5.4E-39 195.5 19.2 154 1-154 15-168 (170)
15 1z08_A RAS-related protein RAB 100.0 1.4E-34 4.7E-39 196.0 18.6 155 1-155 15-169 (170)
16 2bme_A RAB4A, RAS-related prot 100.0 2.6E-34 8.8E-39 197.4 19.9 158 1-158 19-176 (186)
17 1ek0_A Protein (GTP-binding pr 100.0 1.9E-34 6.4E-39 195.1 18.5 153 1-153 12-167 (170)
18 3dz8_A RAS-related protein RAB 100.0 4.1E-35 1.4E-39 202.5 15.4 158 1-158 32-189 (191)
19 1z0j_A RAB-22, RAS-related pro 100.0 5.3E-34 1.8E-38 192.9 20.5 154 1-154 15-168 (170)
20 2o52_A RAS-related protein RAB 100.0 2.4E-34 8.3E-39 200.1 19.1 158 1-158 34-191 (200)
21 1g16_A RAS-related protein SEC 100.0 3.6E-34 1.2E-38 193.8 19.4 156 1-157 12-167 (170)
22 3t5g_A GTP-binding protein RHE 100.0 3.8E-34 1.3E-38 195.8 19.6 158 1-159 15-173 (181)
23 1zbd_A Rabphilin-3A; G protein 100.0 5.4E-34 1.9E-38 198.5 20.7 156 1-156 17-172 (203)
24 3tw8_B RAS-related protein RAB 100.0 8.6E-34 2.9E-38 193.8 21.3 157 1-158 18-174 (181)
25 2oil_A CATX-8, RAS-related pro 100.0 3.4E-34 1.2E-38 198.1 19.4 157 1-157 34-190 (193)
26 2fg5_A RAB-22B, RAS-related pr 100.0 2E-34 7E-39 199.2 18.2 156 1-156 32-187 (192)
27 2g6b_A RAS-related protein RAB 100.0 5.9E-34 2E-38 194.6 20.3 157 1-157 19-176 (180)
28 1z2a_A RAS-related protein RAB 100.0 5E-34 1.7E-38 192.7 18.7 154 1-155 14-167 (168)
29 2hxs_A RAB-26, RAS-related pro 100.0 2.1E-34 7.3E-39 196.5 16.8 157 1-157 15-175 (178)
30 2fn4_A P23, RAS-related protei 100.0 1.6E-33 5.5E-38 192.4 20.2 157 1-158 18-175 (181)
31 2il1_A RAB12; G-protein, GDP, 100.0 3.8E-34 1.3E-38 197.9 17.3 156 1-156 35-191 (192)
32 2y8e_A RAB-protein 6, GH09086P 100.0 6.8E-34 2.3E-38 193.9 18.2 155 1-155 23-177 (179)
33 3kkq_A RAS-related protein M-R 100.0 2E-33 7E-38 192.5 20.2 154 1-155 27-182 (183)
34 2nzj_A GTP-binding protein REM 100.0 1.2E-33 4E-38 192.2 18.5 157 1-158 13-172 (175)
35 3q3j_B RHO-related GTP-binding 100.0 8.1E-34 2.8E-38 199.4 18.2 158 1-160 36-208 (214)
36 2j0v_A RAC-like GTP-binding pr 100.0 2.7E-34 9.1E-39 201.4 15.7 157 1-159 18-184 (212)
37 2gf0_A GTP-binding protein DI- 100.0 3.6E-34 1.2E-38 198.7 16.1 157 1-159 17-175 (199)
38 1z06_A RAS-related protein RAB 100.0 1.6E-33 5.4E-38 194.2 19.2 155 1-155 29-188 (189)
39 3q85_A GTP-binding protein REM 100.0 1.6E-33 5.4E-38 190.6 18.6 156 1-156 11-168 (169)
40 2p5s_A RAS and EF-hand domain 100.0 4.8E-34 1.7E-38 198.4 16.4 155 1-155 37-197 (199)
41 3c5c_A RAS-like protein 12; GD 100.0 1.2E-33 4E-38 194.7 17.9 153 1-155 30-186 (187)
42 3reg_A RHO-like small GTPase; 100.0 3.7E-33 1.3E-37 193.1 20.4 156 1-158 32-191 (194)
43 3oes_A GTPase rhebl1; small GT 100.0 7.6E-34 2.6E-38 197.7 16.7 158 1-159 33-191 (201)
44 1wms_A RAB-9, RAB9, RAS-relate 100.0 5.1E-33 1.7E-37 189.4 20.3 155 1-156 16-175 (177)
45 3cbq_A GTP-binding protein REM 100.0 1.3E-33 4.4E-38 195.8 17.5 157 1-157 32-190 (195)
46 3bc1_A RAS-related protein RAB 100.0 5.3E-33 1.8E-37 191.8 20.2 157 1-157 20-187 (195)
47 3cph_A RAS-related protein SEC 100.0 6.5E-33 2.2E-37 194.3 20.7 156 1-157 29-184 (213)
48 1u8z_A RAS-related protein RAL 100.0 4.5E-33 1.5E-37 187.9 18.6 154 1-155 13-167 (168)
49 1x3s_A RAS-related protein RAB 100.0 7.1E-33 2.4E-37 191.5 20.1 156 1-157 24-180 (195)
50 3q72_A GTP-binding protein RAD 100.0 5.6E-33 1.9E-37 187.4 18.8 154 1-156 11-165 (166)
51 2f7s_A C25KG, RAS-related prot 100.0 2.1E-33 7.1E-38 197.5 17.3 156 1-156 34-200 (217)
52 4dsu_A GTPase KRAS, isoform 2B 100.0 4.5E-33 1.5E-37 191.5 18.4 156 1-158 13-169 (189)
53 1c1y_A RAS-related protein RAP 100.0 4.3E-33 1.5E-37 187.9 17.3 153 1-154 12-166 (167)
54 3ihw_A Centg3; RAS, centaurin, 100.0 1.3E-32 4.4E-37 189.1 19.7 151 1-158 29-183 (184)
55 2q3h_A RAS homolog gene family 100.0 9.6E-33 3.3E-37 192.0 19.3 156 1-158 29-198 (201)
56 3clv_A RAB5 protein, putative; 100.0 1.9E-32 6.5E-37 190.5 20.7 154 1-157 16-206 (208)
57 1ky3_A GTP-binding protein YPT 100.0 4.5E-33 1.5E-37 190.3 16.9 157 1-157 17-180 (182)
58 2yc2_C IFT27, small RAB-relate 100.0 2E-33 6.8E-38 196.1 15.1 157 1-157 29-194 (208)
59 1kao_A RAP2A; GTP-binding prot 100.0 8E-33 2.7E-37 186.4 17.4 154 1-155 12-166 (167)
60 2g3y_A GTP-binding protein GEM 100.0 1.9E-32 6.6E-37 191.8 19.6 156 1-157 46-205 (211)
61 2atv_A RERG, RAS-like estrogen 100.0 1E-32 3.4E-37 191.3 17.7 156 1-158 37-194 (196)
62 1m7b_A RND3/RHOE small GTP-bin 100.0 1.2E-32 4.1E-37 189.1 17.8 153 1-155 16-183 (184)
63 2a9k_A RAS-related protein RAL 100.0 2.2E-32 7.4E-37 187.7 19.0 156 1-157 27-183 (187)
64 2atx_A Small GTP binding prote 100.0 2.8E-32 9.7E-37 188.6 19.5 152 1-154 27-192 (194)
65 1mh1_A RAC1; GTP-binding, GTPa 100.0 2.4E-32 8.2E-37 187.4 18.8 155 1-157 14-182 (186)
66 2iwr_A Centaurin gamma 1; ANK 100.0 4E-32 1.4E-36 185.3 18.6 150 1-157 16-171 (178)
67 1gwn_A RHO-related GTP-binding 100.0 2.5E-32 8.7E-37 190.6 17.9 153 1-155 37-204 (205)
68 4djt_A GTP-binding nuclear pro 100.0 1.3E-32 4.3E-37 193.7 15.6 159 1-159 20-179 (218)
69 2gco_A H9, RHO-related GTP-bin 100.0 1.1E-31 3.6E-36 186.9 19.9 153 1-155 34-200 (201)
70 2fv8_A H6, RHO-related GTP-bin 100.0 1.4E-31 4.7E-36 187.1 20.3 155 1-157 34-202 (207)
71 2j1l_A RHO-related GTP-binding 100.0 4.8E-32 1.6E-36 190.4 17.8 155 1-157 43-211 (214)
72 3con_A GTPase NRAS; structural 100.0 2.5E-31 8.7E-36 183.2 21.1 156 1-158 30-186 (190)
73 2erx_A GTP-binding protein DI- 100.0 2.6E-32 8.8E-37 184.9 15.4 154 1-155 12-167 (172)
74 3l0i_B RAS-related protein RAB 100.0 1.4E-34 4.9E-39 201.0 3.5 156 1-156 42-197 (199)
75 2ce2_X GTPase HRAS; signaling 100.0 2.8E-31 9.6E-36 178.6 19.4 153 1-155 12-165 (166)
76 2cjw_A GTP-binding protein GEM 100.0 2.6E-31 8.7E-36 183.8 18.6 157 1-158 15-175 (192)
77 3gj0_A GTP-binding nuclear pro 100.0 4.1E-32 1.4E-36 191.5 13.4 156 1-159 24-179 (221)
78 3bwd_D RAC-like GTP-binding pr 100.0 2.2E-32 7.5E-37 187.1 11.2 152 1-154 17-180 (182)
79 4gzl_A RAS-related C3 botulinu 100.0 3.8E-31 1.3E-35 184.5 16.5 151 1-153 39-203 (204)
80 3t1o_A Gliding protein MGLA; G 100.0 3.9E-32 1.4E-36 188.0 11.5 154 1-158 23-195 (198)
81 4bas_A ADP-ribosylation factor 100.0 1.7E-31 5.7E-36 185.2 13.4 152 1-158 26-192 (199)
82 2f9l_A RAB11B, member RAS onco 100.0 7.7E-30 2.6E-34 177.2 21.3 157 1-157 14-170 (199)
83 1upt_A ARL1, ADP-ribosylation 100.0 3.9E-31 1.3E-35 179.1 12.5 150 1-157 16-171 (171)
84 1f6b_A SAR1; gtpases, N-termin 100.0 1.5E-30 5.1E-35 180.7 13.8 145 1-152 34-196 (198)
85 1r8s_A ADP-ribosylation factor 100.0 2.1E-31 7.2E-36 179.3 8.5 148 1-155 9-162 (164)
86 1m2o_B GTP-binding protein SAR 100.0 7E-30 2.4E-34 176.2 16.3 145 1-152 32-189 (190)
87 1zd9_A ADP-ribosylation factor 100.0 2.5E-31 8.6E-36 183.1 8.6 150 1-156 31-186 (188)
88 1zj6_A ADP-ribosylation factor 100.0 3.1E-30 1E-34 177.4 14.0 153 1-160 25-183 (187)
89 1ksh_A ARF-like protein 2; sma 100.0 1.1E-29 3.6E-34 174.5 16.5 149 1-156 27-181 (186)
90 1oix_A RAS-related protein RAB 100.0 8E-29 2.7E-33 171.1 19.9 153 1-153 38-190 (191)
91 2h57_A ADP-ribosylation factor 100.0 1.5E-29 5E-34 174.4 16.1 149 1-155 30-187 (190)
92 2zej_A Dardarin, leucine-rich 100.0 6.9E-31 2.4E-35 180.3 8.8 157 1-158 11-181 (184)
93 2wkq_A NPH1-1, RAS-related C3 100.0 4.2E-29 1.4E-33 185.7 19.0 153 1-155 164-330 (332)
94 2b6h_A ADP-ribosylation factor 100.0 1E-30 3.5E-35 180.7 8.7 148 1-155 38-191 (192)
95 2h17_A ADP-ribosylation factor 100.0 9.5E-30 3.2E-34 174.2 12.9 145 1-152 30-180 (181)
96 2x77_A ADP-ribosylation factor 100.0 1.7E-30 5.7E-35 179.0 8.7 150 1-157 31-186 (189)
97 1fzq_A ADP-ribosylation factor 100.0 2.7E-30 9.3E-35 177.0 9.7 149 1-156 25-179 (181)
98 1moz_A ARL1, ADP-ribosylation 100.0 2.4E-29 8.1E-34 172.2 12.3 150 1-157 27-182 (183)
99 3th5_A RAS-related C3 botulinu 99.9 1E-31 3.5E-36 187.2 0.0 151 1-153 39-203 (204)
100 3llu_A RAS-related GTP-binding 100.0 9.1E-29 3.1E-33 171.4 10.5 148 1-153 29-195 (196)
101 2wji_A Ferrous iron transport 100.0 7.6E-28 2.6E-32 162.4 11.9 144 1-153 12-163 (165)
102 3c5h_A Glucocorticoid receptor 100.0 2.7E-29 9.2E-34 180.7 4.8 151 2-154 38-254 (255)
103 2fh5_B SR-beta, signal recogni 100.0 3.3E-28 1.1E-32 170.6 10.0 149 1-152 16-213 (214)
104 3o47_A ADP-ribosylation factor 99.9 1.9E-28 6.4E-33 182.1 7.6 149 1-156 174-328 (329)
105 3lvq_E ARF-GAP with SH3 domain 99.9 3.9E-28 1.3E-32 189.6 9.7 152 1-159 331-488 (497)
106 2lkc_A Translation initiation 99.9 4.9E-27 1.7E-31 159.9 12.6 147 1-159 17-175 (178)
107 2qu8_A Putative nucleolar GTP- 99.9 2.7E-26 9.1E-31 162.5 14.9 154 1-158 38-208 (228)
108 3r7w_B Gtpase2, GTP-binding pr 99.9 4.5E-28 1.5E-32 177.7 5.7 149 1-156 8-175 (331)
109 3r7w_A Gtpase1, GTP-binding pr 99.9 1.2E-26 4E-31 171.0 13.2 150 1-154 12-180 (307)
110 2cxx_A Probable GTP-binding pr 99.9 4.5E-27 1.5E-31 161.7 9.6 149 1-158 10-187 (190)
111 1svi_A GTP-binding protein YSX 99.9 9.3E-27 3.2E-31 160.8 10.2 147 1-154 32-194 (195)
112 2wjg_A FEOB, ferrous iron tran 99.9 1.3E-26 4.3E-31 159.3 10.3 149 1-158 16-172 (188)
113 3dpu_A RAB family protein; roc 99.9 2.2E-27 7.5E-32 186.8 5.8 154 1-158 50-211 (535)
114 3iev_A GTP-binding protein ERA 99.9 3E-26 1E-30 168.9 11.0 154 1-158 19-185 (308)
115 2dyk_A GTP-binding protein; GT 99.9 4E-26 1.4E-30 152.9 10.1 142 1-153 10-160 (161)
116 3a1s_A Iron(II) transport prot 99.9 2.1E-25 7.2E-30 160.5 14.5 146 1-155 14-167 (258)
117 2gj8_A MNME, tRNA modification 99.9 5.2E-26 1.8E-30 154.5 7.9 145 1-155 13-166 (172)
118 3iby_A Ferrous iron transport 99.9 7.7E-26 2.6E-30 162.5 9.0 143 1-152 10-164 (256)
119 3b1v_A Ferrous iron uptake tra 99.9 6E-26 2.1E-30 164.3 7.7 145 1-155 12-164 (272)
120 3pqc_A Probable GTP-binding pr 99.9 5E-25 1.7E-29 151.9 11.9 145 1-155 32-194 (195)
121 4dhe_A Probable GTP-binding pr 99.9 6.3E-25 2.1E-29 154.7 8.3 155 1-159 38-215 (223)
122 3k53_A Ferrous iron transport 99.9 4.6E-24 1.6E-28 154.7 13.0 149 1-157 12-168 (271)
123 3i8s_A Ferrous iron transport 99.9 6.2E-25 2.1E-29 159.4 6.9 147 1-156 12-170 (274)
124 1wf3_A GTP-binding protein; GT 99.9 2.4E-24 8.3E-29 158.0 7.2 147 1-156 16-174 (301)
125 2hjg_A GTP-binding protein ENG 99.9 8.7E-24 3E-28 162.5 10.1 151 1-157 184-351 (436)
126 1nrj_B SR-beta, signal recogni 99.9 7E-25 2.4E-29 154.0 3.5 132 1-141 21-170 (218)
127 2e87_A Hypothetical protein PH 99.9 9E-23 3.1E-27 153.2 14.6 151 1-156 176-337 (357)
128 4dcu_A GTP-binding protein ENG 99.9 1.3E-23 4.5E-28 162.4 10.2 153 1-159 204-373 (456)
129 3gee_A MNME, tRNA modification 99.9 6.5E-23 2.2E-27 158.5 13.6 147 1-154 242-397 (476)
130 1lnz_A SPO0B-associated GTP-bi 99.9 9.2E-24 3.1E-28 157.1 8.2 152 1-157 167-332 (342)
131 1cip_A Protein (guanine nucleo 99.9 1.5E-22 5.1E-27 151.1 10.8 132 22-157 178-346 (353)
132 3qq5_A Small GTP-binding prote 99.9 1.6E-23 5.6E-28 159.5 4.2 147 1-156 43-197 (423)
133 1s0u_A EIF-2-gamma, translatio 99.9 2.9E-21 9.9E-26 147.4 15.9 153 1-155 17-198 (408)
134 1mky_A Probable GTP-binding pr 99.9 8.8E-22 3E-26 151.5 13.0 146 1-156 10-167 (439)
135 1ega_A Protein (GTP-binding pr 99.9 1.4E-22 4.9E-27 148.8 8.2 149 1-156 17-176 (301)
136 2qtf_A Protein HFLX, GTP-bindi 99.9 3E-21 1E-25 144.8 14.8 156 1-159 188-358 (364)
137 1xzp_A Probable tRNA modificat 99.9 4.1E-22 1.4E-26 154.2 10.1 144 1-155 252-405 (482)
138 3sjy_A Translation initiation 99.9 3.5E-21 1.2E-25 146.7 14.7 153 1-156 17-193 (403)
139 3ohm_A Guanine nucleotide-bind 99.9 5.7E-22 1.9E-26 146.1 9.6 144 10-157 133-320 (327)
140 2hjg_A GTP-binding protein ENG 99.9 1.1E-22 3.6E-27 156.5 5.7 145 1-155 12-165 (436)
141 3cb4_D GTP-binding protein LEP 99.9 2.4E-21 8.1E-26 153.2 13.1 149 1-155 13-182 (599)
142 1wb1_A Translation elongation 99.9 2.8E-21 9.7E-26 150.0 12.9 145 1-154 28-188 (482)
143 3geh_A MNME, tRNA modification 99.9 5E-22 1.7E-26 153.1 8.0 145 1-157 233-386 (462)
144 1zcb_A G alpha I/13; GTP-bindi 99.9 2.2E-21 7.6E-26 145.2 11.0 145 9-157 166-355 (362)
145 1kk1_A EIF2gamma; initiation o 99.9 6.6E-21 2.3E-25 145.5 13.8 152 1-154 19-199 (410)
146 2ywe_A GTP-binding protein LEP 99.9 5.3E-21 1.8E-25 151.0 13.3 149 1-155 15-184 (600)
147 3izy_P Translation initiation 99.9 3E-23 1E-27 161.8 -0.4 152 1-157 13-170 (537)
148 2xtz_A Guanine nucleotide-bind 99.9 3.8E-21 1.3E-25 143.5 10.6 118 39-156 181-346 (354)
149 3j2k_7 ERF3, eukaryotic polype 99.8 1.2E-20 4.2E-25 145.0 13.3 142 1-147 26-217 (439)
150 1azs_C GS-alpha; complex (lyas 99.8 1.3E-20 4.6E-25 142.2 13.2 130 23-156 203-386 (402)
151 3p26_A Elongation factor 1 alp 99.8 3.5E-21 1.2E-25 149.7 9.8 142 1-144 42-227 (483)
152 2xtp_A GTPase IMAP family memb 99.8 2.7E-21 9.2E-26 139.3 8.2 153 1-157 31-210 (260)
153 3lxx_A GTPase IMAP family memb 99.8 2.3E-20 7.8E-25 132.9 12.5 152 1-156 38-215 (239)
154 2elf_A Protein translation elo 99.8 3.3E-21 1.1E-25 145.0 8.2 140 1-156 30-181 (370)
155 1u0l_A Probable GTPase ENGC; p 99.8 1.3E-21 4.6E-26 143.6 5.7 134 7-151 32-169 (301)
156 1g7s_A Translation initiation 99.8 2.2E-20 7.6E-25 147.7 12.9 149 1-156 14-219 (594)
157 4fid_A G protein alpha subunit 99.8 6.2E-21 2.1E-25 141.1 9.1 142 10-155 127-328 (340)
158 1jny_A EF-1-alpha, elongation 99.8 1.8E-21 6.3E-26 149.5 6.1 157 1-158 15-224 (435)
159 2qag_A Septin-2, protein NEDD5 99.8 1.1E-21 3.8E-26 147.3 4.6 154 1-159 46-237 (361)
160 1mky_A Probable GTP-binding pr 99.8 8E-20 2.8E-24 140.6 14.6 151 1-157 189-357 (439)
161 3tr5_A RF-3, peptide chain rel 99.8 6.6E-21 2.3E-25 149.0 8.4 107 1-111 22-148 (528)
162 1zun_B Sulfate adenylate trans 99.8 7.8E-21 2.7E-25 146.0 8.6 108 36-146 99-215 (434)
163 3lxw_A GTPase IMAP family memb 99.8 2.2E-20 7.6E-25 133.6 10.3 156 1-158 30-211 (247)
164 3t5d_A Septin-7; GTP-binding p 99.8 2.2E-21 7.5E-26 140.8 5.1 149 1-153 17-202 (274)
165 4dcu_A GTP-binding protein ENG 99.8 2.4E-21 8.2E-26 149.8 4.8 145 1-155 32-185 (456)
166 2c78_A Elongation factor TU-A; 99.8 5.2E-21 1.8E-25 145.9 5.4 137 1-141 20-180 (405)
167 2ged_A SR-beta, signal recogni 99.8 9.5E-21 3.3E-25 130.4 5.8 105 1-114 57-173 (193)
168 1d2e_A Elongation factor TU (E 99.8 2.2E-20 7.4E-25 142.1 7.9 150 1-154 12-194 (397)
169 1zo1_I IF2, translation initia 99.8 1.8E-21 6E-26 150.8 -1.3 146 1-152 13-164 (501)
170 1r5b_A Eukaryotic peptide chai 99.8 1.3E-20 4.3E-25 145.9 3.0 104 40-146 120-243 (467)
171 1f60_A Elongation factor EEF1A 99.8 3E-20 1E-24 143.5 4.9 107 36-145 80-202 (458)
172 3izq_1 HBS1P, elongation facto 99.8 4.1E-20 1.4E-24 146.9 5.6 143 1-145 176-362 (611)
173 3avx_A Elongation factor TS, e 99.8 1.6E-19 5.6E-24 149.6 8.1 149 1-153 305-484 (1289)
174 1pui_A ENGB, probable GTP-bind 99.8 3.6E-19 1.2E-23 124.1 8.3 146 1-155 35-199 (210)
175 1udx_A The GTP-binding protein 99.8 1.7E-18 5.9E-23 131.6 12.5 154 1-158 166-328 (416)
176 2dy1_A Elongation factor G; tr 99.8 9.8E-19 3.4E-23 140.4 10.6 106 1-110 18-139 (665)
177 2aka_B Dynamin-1; fusion prote 99.8 9.8E-20 3.4E-24 133.5 3.7 110 41-153 125-251 (299)
178 3mca_A HBS1, elongation factor 99.7 8E-20 2.7E-24 144.8 -2.0 138 1-143 186-371 (592)
179 2h5e_A Peptide chain release f 99.7 1.8E-17 6.3E-22 129.7 11.1 107 1-111 22-148 (529)
180 1dar_A EF-G, elongation factor 99.7 8.7E-18 3E-22 135.4 8.8 107 1-111 21-143 (691)
181 2qnr_A Septin-2, protein NEDD5 99.7 1.2E-18 4.1E-23 127.8 2.4 153 1-158 27-217 (301)
182 3t34_A Dynamin-related protein 99.7 2.4E-18 8.3E-23 129.3 4.0 108 42-151 137-257 (360)
183 3def_A T7I23.11 protein; chlor 99.7 1.7E-17 5.8E-22 119.6 8.3 109 1-112 45-166 (262)
184 2j69_A Bacterial dynamin-like 99.7 4.8E-17 1.6E-21 131.2 11.5 111 42-155 175-325 (695)
185 2rdo_7 EF-G, elongation factor 99.7 2.7E-16 9.4E-21 126.9 14.3 68 39-110 80-147 (704)
186 1jwy_B Dynamin A GTPase domain 99.7 4.3E-17 1.5E-21 120.3 8.3 113 41-156 131-263 (315)
187 2xex_A Elongation factor G; GT 99.7 6.9E-17 2.4E-21 130.2 9.3 107 1-111 19-141 (693)
188 1h65_A Chloroplast outer envel 99.7 6.7E-17 2.3E-21 117.0 8.4 111 1-113 48-170 (270)
189 2qag_C Septin-7; cell cycle, c 99.7 4.5E-17 1.5E-21 123.9 6.6 148 1-152 40-224 (418)
190 1wxq_A GTP-binding protein; st 99.7 2.8E-17 9.6E-22 124.6 5.0 77 1-77 9-114 (397)
191 2wsm_A Hydrogenase expression/ 99.7 7.9E-17 2.7E-21 113.1 6.3 105 41-156 109-215 (221)
192 2hf9_A Probable hydrogenase ni 99.6 4.7E-18 1.6E-22 119.8 -3.7 144 1-155 47-224 (226)
193 1jal_A YCHF protein; nucleotid 99.6 2.1E-14 7.1E-19 107.2 12.6 136 1-138 11-240 (363)
194 3p32_A Probable GTPase RV1496/ 99.6 1E-15 3.5E-20 114.8 5.5 103 41-155 172-284 (355)
195 3l82_B F-box only protein 4; T 99.6 9.4E-16 3.2E-20 105.0 4.6 107 48-157 109-225 (227)
196 3vqt_A RF-3, peptide chain rel 99.6 2.2E-14 7.7E-19 112.8 13.0 104 1-110 40-165 (548)
197 2yv5_A YJEQ protein; hydrolase 99.6 7E-15 2.4E-19 107.9 9.0 97 51-150 66-164 (302)
198 2x2e_A Dynamin-1; nitration, h 99.6 5.4E-16 1.8E-20 116.2 1.7 108 41-151 130-254 (353)
199 1yrb_A ATP(GTP)binding protein 99.6 2.7E-14 9.4E-19 102.6 10.1 113 41-156 109-258 (262)
200 1n0u_A EF-2, elongation factor 99.5 8.3E-15 2.8E-19 120.4 7.1 70 37-110 94-163 (842)
201 2www_A Methylmalonic aciduria 99.5 3.9E-15 1.3E-19 111.3 3.5 103 41-155 167-279 (349)
202 2qpt_A EH domain-containing pr 99.5 5.7E-15 2E-19 116.3 2.8 68 42-112 155-233 (550)
203 2dby_A GTP-binding protein; GD 99.5 6.9E-14 2.4E-18 104.9 7.6 51 97-147 201-254 (368)
204 2p67_A LAO/AO transport system 99.5 1.7E-14 5.7E-19 107.6 4.1 104 40-154 148-260 (341)
205 3j25_A Tetracycline resistance 99.5 7.7E-15 2.6E-19 117.5 1.7 106 1-110 11-132 (638)
206 3l2o_B F-box only protein 4; s 99.5 2.3E-14 7.7E-19 102.8 3.8 106 48-156 194-309 (312)
207 4a9a_A Ribosome-interacting GT 99.4 5.6E-12 1.9E-16 94.6 12.8 144 1-147 81-240 (376)
208 4fn5_A EF-G 1, elongation fact 99.4 1.3E-11 4.3E-16 100.2 13.6 67 39-109 83-149 (709)
209 2qm8_A GTPase/ATPase; G protei 99.4 5.5E-13 1.9E-17 99.2 5.1 104 40-154 147-260 (337)
210 3zvr_A Dynamin-1; hydrolase, D 99.3 4.3E-12 1.5E-16 102.6 7.6 108 42-152 151-275 (772)
211 2ohf_A Protein OLA1, GTP-bindi 99.2 1.3E-11 4.4E-16 93.1 4.4 79 1-79 31-131 (396)
212 3h2y_A GTPase family protein; 99.2 1.1E-10 3.6E-15 87.9 8.6 97 50-153 55-158 (368)
213 1ni3_A YCHF GTPase, YCHF GTP-b 99.1 9.3E-10 3.2E-14 83.1 13.0 76 1-76 29-127 (392)
214 1puj_A YLQF, conserved hypothe 99.0 3.5E-10 1.2E-14 82.1 6.7 101 45-155 3-106 (282)
215 3ec1_A YQEH GTPase; atnos1, at 99.0 4.4E-10 1.5E-14 84.6 6.1 97 50-153 57-160 (369)
216 3ec1_A YQEH GTPase; atnos1, at 98.7 7E-10 2.4E-14 83.5 -1.0 133 1-142 171-318 (369)
217 3h2y_A GTPase family protein; 98.7 5.1E-10 1.7E-14 84.2 -2.4 127 1-135 169-310 (368)
218 2j37_W Signal recognition part 98.7 2.8E-09 9.6E-14 82.9 0.9 102 40-152 183-310 (504)
219 3cnl_A YLQF, putative uncharac 98.6 1.2E-08 4.2E-13 73.2 3.1 93 48-151 4-97 (262)
220 1tq4_A IIGP1, interferon-induc 98.5 1.3E-06 4.5E-11 66.4 10.5 150 1-157 78-255 (413)
221 2qag_B Septin-6, protein NEDD5 98.4 3.2E-07 1.1E-11 69.9 5.7 132 1-137 51-218 (427)
222 1t9h_A YLOQ, probable GTPase E 98.4 9.6E-08 3.3E-12 69.9 2.4 90 56-148 78-170 (307)
223 3sop_A Neuronal-specific septi 98.3 8E-07 2.7E-11 64.0 5.0 66 63-133 110-178 (270)
224 2rcn_A Probable GTPase ENGC; Y 98.2 7.8E-06 2.7E-10 61.0 8.2 85 61-149 127-213 (358)
225 3cnl_A YLQF, putative uncharac 98.1 5.5E-07 1.9E-11 64.6 1.5 49 1-53 108-156 (262)
226 1puj_A YLQF, conserved hypothe 98.1 1.3E-06 4.6E-11 63.2 3.4 48 1-52 129-176 (282)
227 3dm5_A SRP54, signal recogniti 98.1 1.8E-06 6.2E-11 66.1 2.9 90 41-142 183-278 (443)
228 2v3c_C SRP54, signal recogniti 97.9 4.5E-06 1.5E-10 64.0 3.2 84 40-134 180-271 (432)
229 3kl4_A SRP54, signal recogniti 97.8 1.1E-05 3.8E-10 61.7 3.5 91 40-142 179-277 (433)
230 1j8m_F SRP54, signal recogniti 97.7 6.5E-05 2.2E-09 54.8 5.7 92 40-144 180-280 (297)
231 1f5n_A Interferon-induced guan 97.6 3.4E-05 1.2E-09 61.2 3.8 52 1-52 47-102 (592)
232 1bif_A 6-phosphofructo-2-kinas 97.4 5.8E-06 2E-10 64.1 -2.8 91 1-93 48-148 (469)
233 3szr_A Interferon-induced GTP- 97.3 0.00039 1.3E-08 55.6 6.1 66 42-111 148-228 (608)
234 3e70_C DPA, signal recognition 97.0 0.00068 2.3E-08 50.1 4.7 91 42-144 213-309 (328)
235 3q5d_A Atlastin-1; G protein, 96.8 0.001 3.5E-08 51.1 3.8 15 1-15 76-90 (447)
236 4dzz_A Plasmid partitioning pr 96.4 0.005 1.7E-07 41.8 5.0 85 41-132 76-162 (206)
237 2xxa_A Signal recognition part 96.0 0.043 1.5E-06 42.1 8.6 84 40-134 183-273 (433)
238 1t9h_A YLOQ, probable GTPase E 95.8 0.0021 7E-08 47.0 0.7 16 1-16 182-197 (307)
239 2yv5_A YJEQ protein; hydrolase 95.7 0.015 5.1E-07 42.4 4.9 13 1-13 174-186 (302)
240 3cwq_A Para family chromosome 95.7 0.058 2E-06 36.9 7.5 85 41-132 68-153 (209)
241 3ea0_A ATPase, para family; al 95.6 0.11 3.7E-06 36.1 9.0 91 40-138 118-208 (245)
242 1ye8_A Protein THEP1, hypothet 95.5 0.0053 1.8E-07 41.1 1.8 16 1-16 9-24 (178)
243 1kgd_A CASK, peripheral plasma 95.5 0.0053 1.8E-07 41.1 1.8 15 1-15 14-28 (180)
244 1ex7_A Guanylate kinase; subst 95.4 0.0012 4E-08 44.8 -1.9 15 1-15 10-24 (186)
245 1zp6_A Hypothetical protein AT 95.3 0.007 2.4E-07 40.6 1.8 15 1-15 18-32 (191)
246 1lvg_A Guanylate kinase, GMP k 95.1 0.0086 2.9E-07 40.7 1.8 14 1-14 13-26 (198)
247 3tr0_A Guanylate kinase, GMP k 95.1 0.0088 3E-07 40.6 1.8 15 1-15 16-30 (205)
248 3a00_A Guanylate kinase, GMP k 95.1 0.0089 3E-07 40.1 1.8 15 1-15 10-24 (186)
249 3c8u_A Fructokinase; YP_612366 95.0 0.0088 3E-07 40.9 1.7 15 1-15 31-45 (208)
250 1znw_A Guanylate kinase, GMP k 95.0 0.0095 3.2E-07 40.7 1.8 16 1-16 29-44 (207)
251 1np6_A Molybdopterin-guanine d 95.0 0.0098 3.4E-07 39.7 1.8 15 1-15 15-29 (174)
252 4gp7_A Metallophosphoesterase; 94.9 0.0081 2.8E-07 39.8 1.2 13 1-13 18-30 (171)
253 1s96_A Guanylate kinase, GMP k 94.9 0.01 3.6E-07 41.1 1.8 16 1-16 25-40 (219)
254 3end_A Light-independent proto 94.8 0.53 1.8E-05 34.0 10.9 85 40-133 156-242 (307)
255 2rcn_A Probable GTPase ENGC; Y 94.7 0.011 3.8E-07 44.1 1.7 17 1-17 224-240 (358)
256 1z6g_A Guanylate kinase; struc 94.7 0.012 4.1E-07 40.6 1.8 28 128-159 184-211 (218)
257 1kag_A SKI, shikimate kinase I 94.6 0.014 4.7E-07 38.5 1.8 15 1-15 13-27 (173)
258 3kb2_A SPBC2 prophage-derived 94.5 0.015 5.1E-07 38.1 1.8 30 129-159 141-170 (173)
259 3ney_A 55 kDa erythrocyte memb 94.5 0.015 5.2E-07 39.6 1.8 26 129-158 167-192 (197)
260 1ly1_A Polynucleotide kinase; 94.5 0.015 5.2E-07 38.4 1.8 14 1-14 11-24 (181)
261 2pcj_A ABC transporter, lipopr 94.5 0.014 4.9E-07 40.5 1.7 16 1-16 39-54 (224)
262 3tif_A Uncharacterized ABC tra 94.4 0.014 5E-07 40.8 1.7 16 1-16 40-55 (235)
263 2bdt_A BH3686; alpha-beta prot 94.4 0.016 5.4E-07 38.8 1.8 14 1-14 11-24 (189)
264 1u0l_A Probable GTPase ENGC; p 94.4 0.014 4.7E-07 42.5 1.5 16 1-16 178-193 (301)
265 1xjc_A MOBB protein homolog; s 94.4 0.017 5.9E-07 38.3 1.8 14 1-14 13-26 (169)
266 1htw_A HI0065; nucleotide-bind 94.3 0.018 6.1E-07 37.8 1.8 16 1-16 42-57 (158)
267 4eun_A Thermoresistant glucoki 94.3 0.017 5.9E-07 39.1 1.8 14 1-14 38-51 (200)
268 2j41_A Guanylate kinase; GMP, 94.3 0.017 5.9E-07 39.1 1.8 16 1-16 15-30 (207)
269 3lw7_A Adenylate kinase relate 94.3 0.016 5.6E-07 37.9 1.7 12 1-12 10-21 (179)
270 2qor_A Guanylate kinase; phosp 94.3 0.017 6E-07 39.3 1.8 18 141-158 182-199 (204)
271 2onk_A Molybdate/tungstate ABC 94.3 0.018 6E-07 40.5 1.8 16 1-16 33-48 (240)
272 1qhx_A CPT, protein (chloramph 94.3 0.017 5.7E-07 38.2 1.7 14 1-14 12-25 (178)
273 3asz_A Uridine kinase; cytidin 94.3 0.018 6.1E-07 39.3 1.8 15 1-15 15-29 (211)
274 3tau_A Guanylate kinase, GMP k 94.2 0.019 6.5E-07 39.3 1.8 16 1-16 17-32 (208)
275 3ec2_A DNA replication protein 94.2 0.02 6.8E-07 38.1 1.8 15 1-15 47-61 (180)
276 3t61_A Gluconokinase; PSI-biol 94.1 0.02 6.8E-07 38.8 1.8 15 1-15 27-41 (202)
277 2i3b_A HCR-ntpase, human cance 94.1 0.021 7.2E-07 38.6 1.9 15 1-15 10-24 (189)
278 1sgw_A Putative ABC transporte 94.1 0.019 6.6E-07 39.6 1.7 16 1-16 44-59 (214)
279 2cbz_A Multidrug resistance-as 94.1 0.019 6.6E-07 40.2 1.7 16 1-16 40-55 (237)
280 1knq_A Gluconate kinase; ALFA/ 94.0 0.022 7.4E-07 37.6 1.8 14 1-14 17-30 (175)
281 1b0u_A Histidine permease; ABC 94.0 0.02 6.7E-07 40.8 1.7 16 1-16 41-56 (262)
282 1g6h_A High-affinity branched- 94.0 0.02 6.9E-07 40.6 1.7 16 1-16 42-57 (257)
283 3b85_A Phosphate starvation-in 94.0 0.02 6.7E-07 39.4 1.5 15 1-15 31-45 (208)
284 1nks_A Adenylate kinase; therm 93.9 0.024 8E-07 37.9 1.8 14 1-14 10-23 (194)
285 4a74_A DNA repair and recombin 93.9 0.023 7.9E-07 39.1 1.8 15 1-15 34-48 (231)
286 2d2e_A SUFC protein; ABC-ATPas 93.9 0.023 7.9E-07 40.2 1.8 15 1-15 38-52 (250)
287 2ff7_A Alpha-hemolysin translo 93.9 0.022 7.5E-07 40.2 1.7 16 1-16 44-59 (247)
288 1mv5_A LMRA, multidrug resista 93.9 0.022 7.5E-07 40.1 1.7 15 1-15 37-51 (243)
289 1ji0_A ABC transporter; ATP bi 93.9 0.022 7.6E-07 40.0 1.7 16 1-16 41-56 (240)
290 1hyq_A MIND, cell division inh 93.8 0.48 1.6E-05 33.2 8.7 83 41-132 111-193 (263)
291 2olj_A Amino acid ABC transpor 93.8 0.022 7.7E-07 40.6 1.7 16 1-16 59-74 (263)
292 3gfo_A Cobalt import ATP-bindi 93.8 0.022 7.7E-07 40.9 1.7 16 1-16 43-58 (275)
293 4g1u_C Hemin import ATP-bindin 93.8 0.022 7.5E-07 40.7 1.6 16 1-16 46-61 (266)
294 2pze_A Cystic fibrosis transme 93.8 0.023 7.9E-07 39.6 1.7 16 1-16 43-58 (229)
295 1vpl_A ABC transporter, ATP-bi 93.8 0.023 7.9E-07 40.4 1.7 16 1-16 50-65 (256)
296 2qi9_C Vitamin B12 import ATP- 93.8 0.024 8.1E-07 40.1 1.7 16 1-16 35-50 (249)
297 2f1r_A Molybdopterin-guanine d 93.8 0.014 4.9E-07 38.8 0.5 15 1-15 11-25 (171)
298 2bbw_A Adenylate kinase 4, AK4 93.8 0.025 8.5E-07 39.7 1.8 28 131-161 213-240 (246)
299 3q9l_A Septum site-determining 93.7 0.094 3.2E-06 36.8 4.8 67 40-109 113-185 (260)
300 2zu0_C Probable ATP-dependent 93.7 0.026 9E-07 40.3 1.8 15 1-15 55-69 (267)
301 3co5_A Putative two-component 93.7 0.11 3.9E-06 33.0 4.8 15 1-15 36-50 (143)
302 2rhm_A Putative kinase; P-loop 93.7 0.025 8.6E-07 37.8 1.7 14 1-14 14-27 (193)
303 3uc9_A Increased recombination 93.7 0.073 2.5E-06 37.1 4.0 73 1-79 38-117 (233)
304 1kht_A Adenylate kinase; phosp 93.7 0.025 8.6E-07 37.7 1.7 14 1-14 12-25 (192)
305 3uie_A Adenylyl-sulfate kinase 93.7 0.027 9.3E-07 38.2 1.8 17 140-156 179-195 (200)
306 3aez_A Pantothenate kinase; tr 93.7 0.026 9E-07 41.3 1.8 15 1-15 99-113 (312)
307 2jaq_A Deoxyguanosine kinase; 93.6 0.028 9.6E-07 37.9 1.8 25 129-155 176-200 (205)
308 2ghi_A Transport protein; mult 93.6 0.026 8.8E-07 40.2 1.7 15 1-15 55-69 (260)
309 2ixe_A Antigen peptide transpo 93.6 0.026 8.8E-07 40.5 1.7 16 1-16 54-69 (271)
310 2eyu_A Twitching motility prot 93.6 0.027 9.4E-07 40.1 1.8 14 1-14 34-47 (261)
311 2ihy_A ABC transporter, ATP-bi 93.6 0.026 8.9E-07 40.6 1.7 16 1-16 56-71 (279)
312 1g3q_A MIND ATPase, cell divis 93.6 0.58 2E-05 32.2 8.5 65 41-110 112-176 (237)
313 2nq2_C Hypothetical ABC transp 93.5 0.028 9.4E-07 39.9 1.7 16 1-16 40-55 (253)
314 2yz2_A Putative ABC transporte 93.5 0.028 9.5E-07 40.1 1.7 15 1-15 42-56 (266)
315 2ehv_A Hypothetical protein PH 93.4 0.031 1.1E-06 39.0 1.8 14 1-14 39-52 (251)
316 2kjq_A DNAA-related protein; s 93.4 0.026 9E-07 36.5 1.3 16 1-16 45-60 (149)
317 2pjz_A Hypothetical protein ST 93.3 0.03 1E-06 39.9 1.7 16 1-16 39-54 (263)
318 3vaa_A Shikimate kinase, SK; s 93.3 0.034 1.2E-06 37.6 1.8 14 1-14 34-47 (199)
319 2chg_A Replication factor C sm 93.3 0.2 6.9E-06 33.8 5.8 15 1-15 47-61 (226)
320 1gtv_A TMK, thymidylate kinase 93.3 0.019 6.5E-07 39.1 0.5 14 1-14 9-22 (214)
321 3fvq_A Fe(3+) IONS import ATP- 93.3 0.033 1.1E-06 41.6 1.8 16 1-16 39-54 (359)
322 1nij_A Hypothetical protein YJ 93.3 0.03 1E-06 41.1 1.5 16 1-16 13-28 (318)
323 1z47_A CYSA, putative ABC-tran 93.2 0.035 1.2E-06 41.4 1.8 16 1-16 50-65 (355)
324 2v9p_A Replication protein E1; 93.1 0.036 1.2E-06 40.4 1.8 15 1-15 135-149 (305)
325 2if2_A Dephospho-COA kinase; a 93.1 0.038 1.3E-06 37.4 1.8 14 1-14 10-23 (204)
326 3lnc_A Guanylate kinase, GMP k 93.1 0.024 8.3E-07 39.3 0.8 15 1-15 36-51 (231)
327 2qt1_A Nicotinamide riboside k 93.1 0.039 1.3E-06 37.5 1.8 15 1-15 30-44 (207)
328 3cm0_A Adenylate kinase; ATP-b 93.1 0.037 1.3E-06 36.8 1.7 14 1-14 13-26 (186)
329 2plr_A DTMP kinase, probable t 93.1 0.039 1.3E-06 37.4 1.8 14 1-14 13-26 (213)
330 2jeo_A Uridine-cytidine kinase 93.0 0.039 1.3E-06 38.7 1.8 14 1-14 34-47 (245)
331 1rz3_A Hypothetical protein rb 93.0 0.04 1.4E-06 37.4 1.8 14 1-14 31-44 (201)
332 2yyz_A Sugar ABC transporter, 93.0 0.039 1.3E-06 41.2 1.8 16 1-16 38-53 (359)
333 2yvu_A Probable adenylyl-sulfa 93.0 0.041 1.4E-06 36.7 1.8 14 1-14 22-35 (186)
334 2it1_A 362AA long hypothetical 93.0 0.039 1.3E-06 41.3 1.8 16 1-16 38-53 (362)
335 1g29_1 MALK, maltose transport 92.9 0.04 1.4E-06 41.4 1.8 16 1-16 38-53 (372)
336 2z0h_A DTMP kinase, thymidylat 92.9 0.043 1.5E-06 36.8 1.8 14 1-14 9-22 (197)
337 1cke_A CK, MSSA, protein (cyti 92.9 0.042 1.5E-06 37.8 1.8 14 1-14 14-27 (227)
338 1v43_A Sugar-binding transport 92.9 0.042 1.4E-06 41.3 1.8 15 1-15 46-60 (372)
339 1sxj_E Activator 1 40 kDa subu 92.9 0.26 8.8E-06 36.3 6.1 14 1-14 45-58 (354)
340 1gvn_B Zeta; postsegregational 92.8 0.041 1.4E-06 39.7 1.7 14 1-14 42-55 (287)
341 3rlf_A Maltose/maltodextrin im 92.8 0.043 1.5E-06 41.3 1.8 16 1-16 38-53 (381)
342 1tev_A UMP-CMP kinase; ploop, 92.8 0.045 1.5E-06 36.5 1.8 14 1-14 12-25 (196)
343 1jjv_A Dephospho-COA kinase; P 92.8 0.046 1.6E-06 37.1 1.8 14 1-14 11-24 (206)
344 2x8a_A Nuclear valosin-contain 92.8 0.045 1.5E-06 39.2 1.8 15 1-15 53-67 (274)
345 3iij_A Coilin-interacting nucl 92.8 0.043 1.5E-06 36.3 1.7 14 1-14 20-33 (180)
346 2bbs_A Cystic fibrosis transme 92.7 0.042 1.4E-06 39.8 1.7 15 1-15 73-87 (290)
347 1via_A Shikimate kinase; struc 92.7 0.047 1.6E-06 36.0 1.8 14 1-14 13-26 (175)
348 3kjh_A CO dehydrogenase/acetyl 92.7 0.32 1.1E-05 33.7 6.2 65 40-109 131-195 (254)
349 3tui_C Methionine import ATP-b 92.7 0.046 1.6E-06 40.9 1.8 16 1-16 63-78 (366)
350 3jvv_A Twitching mobility prot 92.6 0.046 1.6E-06 40.8 1.8 15 1-15 132-146 (356)
351 2wwf_A Thymidilate kinase, put 92.6 0.046 1.6E-06 37.1 1.7 25 130-156 176-200 (212)
352 2pbr_A DTMP kinase, thymidylat 92.6 0.05 1.7E-06 36.3 1.8 14 1-14 9-22 (195)
353 2pt7_A CAG-ALFA; ATPase, prote 92.6 0.046 1.6E-06 40.3 1.7 16 1-16 180-195 (330)
354 1sq5_A Pantothenate kinase; P- 92.6 0.048 1.6E-06 39.7 1.8 15 1-15 89-103 (308)
355 1ixz_A ATP-dependent metallopr 92.6 0.049 1.7E-06 38.3 1.8 15 1-15 58-72 (254)
356 2w0m_A SSO2452; RECA, SSPF, un 92.5 0.051 1.7E-06 37.3 1.8 15 1-15 32-46 (235)
357 3d31_A Sulfate/molybdate ABC t 92.5 0.036 1.2E-06 41.2 1.1 16 1-16 35-50 (348)
358 3trf_A Shikimate kinase, SK; a 92.5 0.049 1.7E-06 36.2 1.7 14 1-14 14-27 (185)
359 2ph1_A Nucleotide-binding prot 92.4 0.3 1E-05 34.4 5.8 91 39-133 127-224 (262)
360 2gza_A Type IV secretion syste 92.4 0.052 1.8E-06 40.6 1.8 15 1-15 184-198 (361)
361 1lw7_A Transcriptional regulat 92.4 0.046 1.6E-06 40.8 1.5 15 1-15 179-193 (365)
362 2pez_A Bifunctional 3'-phospho 92.4 0.056 1.9E-06 35.8 1.8 14 1-14 14-27 (179)
363 2pt5_A Shikimate kinase, SK; a 92.3 0.053 1.8E-06 35.4 1.7 14 1-14 9-22 (168)
364 3fb4_A Adenylate kinase; psych 92.3 0.052 1.8E-06 37.1 1.7 14 1-14 9-22 (216)
365 1e6c_A Shikimate kinase; phosp 92.3 0.054 1.9E-06 35.5 1.7 14 1-14 11-24 (173)
366 2vli_A Antibiotic resistance p 92.3 0.038 1.3E-06 36.6 0.9 14 1-14 14-27 (183)
367 1in4_A RUVB, holliday junction 92.3 0.055 1.9E-06 39.9 1.8 15 1-15 60-74 (334)
368 1jbk_A CLPB protein; beta barr 92.3 0.058 2E-06 35.6 1.8 15 1-15 52-66 (195)
369 3tqc_A Pantothenate kinase; bi 92.3 0.056 1.9E-06 39.7 1.8 14 1-14 101-114 (321)
370 2v54_A DTMP kinase, thymidylat 92.3 0.054 1.8E-06 36.5 1.7 15 1-15 13-27 (204)
371 1nn5_A Similar to deoxythymidy 92.2 0.056 1.9E-06 36.8 1.7 14 1-14 18-31 (215)
372 2c95_A Adenylate kinase 1; tra 92.2 0.061 2.1E-06 36.0 1.8 14 1-14 18-31 (196)
373 1cr0_A DNA primase/helicase; R 92.2 0.058 2E-06 38.9 1.8 15 1-15 44-58 (296)
374 3a4m_A L-seryl-tRNA(SEC) kinas 92.2 0.055 1.9E-06 38.3 1.7 27 130-156 148-174 (260)
375 3gd7_A Fusion complex of cysti 92.1 0.058 2E-06 40.7 1.8 15 1-15 56-70 (390)
376 1zd8_A GTP:AMP phosphotransfer 92.1 0.057 1.9E-06 37.3 1.7 26 131-159 193-218 (227)
377 3dl0_A Adenylate kinase; phosp 92.1 0.057 2E-06 36.9 1.7 14 1-14 9-22 (216)
378 2bwj_A Adenylate kinase 5; pho 92.1 0.063 2.2E-06 36.0 1.8 14 1-14 21-34 (199)
379 2cdn_A Adenylate kinase; phosp 92.0 0.06 2E-06 36.4 1.7 14 1-14 29-42 (201)
380 1rj9_A FTSY, signal recognitio 92.0 0.063 2.2E-06 39.1 1.8 84 42-135 186-281 (304)
381 2cvh_A DNA repair and recombin 92.0 0.065 2.2E-06 36.5 1.8 14 1-14 29-42 (220)
382 2oap_1 GSPE-2, type II secreti 91.9 0.063 2.2E-06 42.1 1.9 16 1-16 269-284 (511)
383 1y63_A LMAJ004144AAA protein; 91.9 0.062 2.1E-06 35.8 1.7 15 1-15 19-33 (184)
384 2ewv_A Twitching motility prot 91.9 0.063 2.2E-06 40.3 1.8 14 1-14 145-158 (372)
385 2vp4_A Deoxynucleoside kinase; 91.9 0.047 1.6E-06 37.9 1.1 15 1-15 29-43 (230)
386 1qf9_A UMP/CMP kinase, protein 91.9 0.068 2.3E-06 35.6 1.8 14 1-14 15-28 (194)
387 1oxx_K GLCV, glucose, ABC tran 91.9 0.037 1.3E-06 41.3 0.5 16 1-16 40-55 (353)
388 3k9g_A PF-32 protein; ssgcid, 91.9 0.56 1.9E-05 33.0 6.7 64 41-108 145-208 (267)
389 1odf_A YGR205W, hypothetical 3 91.9 0.066 2.3E-06 38.7 1.8 14 1-14 40-53 (290)
390 3kta_A Chromosome segregation 91.8 0.071 2.4E-06 35.3 1.8 14 1-14 35-48 (182)
391 1e4v_A Adenylate kinase; trans 91.7 0.072 2.4E-06 36.4 1.8 14 1-14 9-22 (214)
392 3nh6_A ATP-binding cassette SU 91.7 0.046 1.6E-06 39.9 0.9 15 1-15 89-103 (306)
393 2iyv_A Shikimate kinase, SK; t 91.7 0.068 2.3E-06 35.5 1.7 14 1-14 11-24 (184)
394 4ido_A Atlastin-1; GTPase, GTP 91.7 0.24 8.2E-06 38.1 4.8 16 37-52 136-151 (457)
395 1aky_A Adenylate kinase; ATP:A 91.7 0.072 2.5E-06 36.5 1.8 14 1-14 13-26 (220)
396 2ze6_A Isopentenyl transferase 91.7 0.072 2.5E-06 37.6 1.8 14 1-14 10-23 (253)
397 2p5t_B PEZT; postsegregational 91.7 0.052 1.8E-06 38.3 1.1 14 1-14 41-54 (253)
398 1iy2_A ATP-dependent metallopr 91.7 0.072 2.5E-06 38.0 1.8 16 1-16 82-97 (278)
399 1n0w_A DNA repair protein RAD5 91.6 0.075 2.6E-06 36.8 1.8 15 1-15 33-47 (243)
400 3b9q_A Chloroplast SRP recepto 91.6 0.074 2.5E-06 38.7 1.8 14 1-14 109-122 (302)
401 1zuh_A Shikimate kinase; alpha 91.6 0.073 2.5E-06 34.8 1.7 14 1-14 16-29 (168)
402 4eaq_A DTMP kinase, thymidylat 91.6 0.076 2.6E-06 36.9 1.8 25 130-156 201-225 (229)
403 1ukz_A Uridylate kinase; trans 91.6 0.077 2.6E-06 35.8 1.8 14 1-14 24-37 (203)
404 1wcv_1 SOJ, segregation protei 91.5 0.7 2.4E-05 32.4 6.8 67 40-109 111-181 (257)
405 1p9r_A General secretion pathw 91.5 0.074 2.5E-06 40.6 1.8 15 1-15 176-190 (418)
406 1zak_A Adenylate kinase; ATP:A 91.5 0.079 2.7E-06 36.4 1.8 25 130-156 187-211 (222)
407 2xb4_A Adenylate kinase; ATP-b 91.5 0.079 2.7E-06 36.5 1.8 14 1-14 9-22 (223)
408 1m7g_A Adenylylsulfate kinase; 91.4 0.083 2.8E-06 36.0 1.8 16 141-156 188-203 (211)
409 1vht_A Dephospho-COA kinase; s 91.2 0.083 2.8E-06 36.1 1.7 14 1-14 13-26 (218)
410 3tlx_A Adenylate kinase 2; str 91.1 0.091 3.1E-06 36.8 1.8 14 1-14 38-51 (243)
411 3pfi_A Holliday junction ATP-d 91.0 0.42 1.4E-05 34.9 5.4 15 1-15 64-78 (338)
412 1qhl_A Protein (cell division 90.9 0.071 2.4E-06 37.1 1.1 16 1-16 36-51 (227)
413 1cp2_A CP2, nitrogenase iron p 90.9 3 0.0001 29.2 9.8 87 41-132 116-205 (269)
414 2w58_A DNAI, primosome compone 90.9 0.1 3.4E-06 35.2 1.8 15 1-15 63-77 (202)
415 1ltq_A Polynucleotide kinase; 90.9 0.096 3.3E-06 37.7 1.8 14 1-14 11-24 (301)
416 2p65_A Hypothetical protein PF 90.8 0.076 2.6E-06 34.9 1.2 15 1-15 52-66 (187)
417 3be4_A Adenylate kinase; malar 90.8 0.1 3.4E-06 35.8 1.8 14 1-14 14-27 (217)
418 4e22_A Cytidylate kinase; P-lo 90.8 0.092 3.2E-06 37.0 1.7 19 139-157 228-246 (252)
419 3bos_A Putative DNA replicatio 90.8 0.1 3.4E-06 36.0 1.8 15 1-15 61-75 (242)
420 1uf9_A TT1252 protein; P-loop, 90.6 0.11 3.7E-06 34.9 1.8 15 1-15 17-31 (203)
421 3u61_B DNA polymerase accessor 90.6 1.1 3.8E-05 32.4 7.4 15 1-15 57-71 (324)
422 1lv7_A FTSH; alpha/beta domain 90.6 0.11 3.7E-06 36.6 1.8 15 1-15 54-68 (257)
423 2npi_A Protein CLP1; CLP1-PCF1 90.5 0.1 3.6E-06 40.3 1.8 15 1-15 147-161 (460)
424 2yhs_A FTSY, cell division pro 90.5 0.1 3.6E-06 40.6 1.8 90 41-142 376-477 (503)
425 3qf7_A RAD50; ABC-ATPase, ATPa 90.4 0.58 2E-05 34.9 5.8 13 1-13 32-44 (365)
426 2obl_A ESCN; ATPase, hydrolase 90.4 0.11 3.7E-06 38.6 1.8 16 1-16 80-95 (347)
427 1njg_A DNA polymerase III subu 90.3 0.12 4E-06 35.4 1.8 14 1-14 54-67 (250)
428 1ak2_A Adenylate kinase isoenz 90.3 0.12 4.1E-06 35.8 1.8 24 131-156 208-231 (233)
429 2og2_A Putative signal recogni 90.2 0.12 4E-06 38.7 1.8 14 1-14 166-179 (359)
430 1nlf_A Regulatory protein REPA 90.2 0.12 4.1E-06 36.9 1.8 14 1-14 39-52 (279)
431 1svm_A Large T antigen; AAA+ f 90.1 0.12 4.2E-06 38.8 1.8 14 1-14 178-191 (377)
432 1f2t_A RAD50 ABC-ATPase; DNA d 89.7 0.15 5.1E-06 32.9 1.8 13 1-13 32-44 (149)
433 3nwj_A ATSK2; P loop, shikimat 89.7 0.14 4.9E-06 36.1 1.8 20 137-156 218-237 (250)
434 3pg5_A Uncharacterized protein 89.7 1 3.5E-05 33.5 6.6 46 40-88 153-198 (361)
435 2dpy_A FLII, flagellum-specifi 89.5 0.14 4.8E-06 39.3 1.8 16 1-16 166-181 (438)
436 3ake_A Cytidylate kinase; CMP 89.5 0.15 5.2E-06 34.3 1.8 14 1-14 11-24 (208)
437 1l8q_A Chromosomal replication 89.5 0.15 5E-06 37.2 1.8 15 1-15 46-60 (324)
438 3h4m_A Proteasome-activating n 89.4 0.15 5.1E-06 36.3 1.8 15 1-15 60-74 (285)
439 2dr3_A UPF0273 protein PH0284; 89.4 0.15 5.1E-06 35.3 1.8 14 1-14 32-45 (247)
440 3euj_A Chromosome partition pr 89.4 0.15 5E-06 39.7 1.8 14 1-14 38-51 (483)
441 2grj_A Dephospho-COA kinase; T 89.3 0.15 5.1E-06 34.4 1.7 15 1-15 21-35 (192)
442 2ocp_A DGK, deoxyguanosine kin 89.3 0.16 5.4E-06 35.4 1.8 14 1-14 11-24 (241)
443 1yqt_A RNAse L inhibitor; ATP- 89.2 0.15 5.3E-06 40.2 1.8 15 1-15 56-70 (538)
444 3b9p_A CG5977-PA, isoform A; A 89.1 0.16 5.5E-06 36.4 1.8 15 1-15 63-77 (297)
445 1pzn_A RAD51, DNA repair and r 89.0 0.16 5.6E-06 37.7 1.8 16 1-16 140-155 (349)
446 1uj2_A Uridine-cytidine kinase 89.0 0.16 5.4E-06 35.7 1.7 14 1-14 31-44 (252)
447 2qby_A CDC6 homolog 1, cell di 88.8 0.17 5.8E-06 37.4 1.8 15 1-15 54-68 (386)
448 3zvl_A Bifunctional polynucleo 88.8 0.17 5.6E-06 38.6 1.7 15 1-15 267-281 (416)
449 2f6r_A COA synthase, bifunctio 88.7 0.17 5.8E-06 36.3 1.7 14 1-14 84-97 (281)
450 2qz4_A Paraplegin; AAA+, SPG7, 88.7 0.18 6.3E-06 35.3 1.8 15 1-15 48-62 (262)
451 2r62_A Cell division protease 88.6 0.18 6.2E-06 35.6 1.8 15 1-15 53-67 (268)
452 3t15_A Ribulose bisphosphate c 88.6 0.19 6.3E-06 36.3 1.8 15 1-15 45-59 (293)
453 2oze_A ORF delta'; para, walke 88.5 0.63 2.1E-05 33.4 4.6 67 41-110 155-225 (298)
454 3r20_A Cytidylate kinase; stru 88.5 0.18 6.3E-06 35.2 1.7 14 1-14 18-31 (233)
455 3j16_B RLI1P; ribosome recycli 88.4 0.19 6.4E-06 40.3 1.8 15 1-15 112-126 (608)
456 3ozx_A RNAse L inhibitor; ATP 88.3 0.18 6.1E-06 39.8 1.7 15 1-15 34-48 (538)
457 1p5z_B DCK, deoxycytidine kina 88.2 0.13 4.4E-06 36.4 0.7 24 130-155 235-258 (263)
458 2orw_A Thymidine kinase; TMTK, 88.1 0.22 7.4E-06 33.3 1.8 38 66-108 76-114 (184)
459 1fnn_A CDC6P, cell division co 88.1 0.2 7E-06 37.2 1.8 15 1-15 53-67 (389)
460 3cf0_A Transitional endoplasmi 88.0 0.21 7.2E-06 36.1 1.8 15 1-15 58-72 (301)
461 3sr0_A Adenylate kinase; phosp 88.0 0.22 7.6E-06 34.0 1.8 23 131-155 182-204 (206)
462 3bk7_A ABC transporter ATP-bin 87.9 0.19 6.6E-06 40.2 1.7 15 1-15 126-140 (607)
463 4edh_A DTMP kinase, thymidylat 87.9 0.23 7.7E-06 34.2 1.8 27 128-156 181-207 (213)
464 3b60_A Lipid A export ATP-bind 87.9 0.2 6.7E-06 39.9 1.7 15 1-15 378-392 (582)
465 2xj4_A MIPZ; replication, cell 87.8 0.44 1.5E-05 34.1 3.4 67 41-110 104-191 (286)
466 1tue_A Replication protein E1; 87.8 0.18 6E-06 34.6 1.2 14 1-14 67-80 (212)
467 2px0_A Flagellar biosynthesis 87.7 0.23 7.8E-06 36.0 1.8 85 41-135 183-273 (296)
468 1vma_A Cell division protein F 87.6 0.23 8E-06 36.2 1.8 86 41-136 187-284 (306)
469 3ozx_A RNAse L inhibitor; ATP 87.6 0.21 7.2E-06 39.4 1.7 16 1-16 303-318 (538)
470 3b5x_A Lipid A export ATP-bind 87.4 0.22 7.5E-06 39.6 1.7 15 1-15 378-392 (582)
471 1sxj_C Activator 1 40 kDa subu 87.3 0.24 8.3E-06 36.4 1.8 15 1-15 55-69 (340)
472 4hlc_A DTMP kinase, thymidylat 87.3 0.24 8.3E-06 33.8 1.7 26 129-156 176-201 (205)
473 3cr8_A Sulfate adenylyltranfer 87.3 0.17 5.9E-06 40.0 1.0 15 1-15 378-392 (552)
474 3n70_A Transport activator; si 87.2 0.25 8.7E-06 31.4 1.7 16 1-16 33-48 (145)
475 2v1u_A Cell division control p 87.2 0.25 8.5E-06 36.6 1.8 15 1-15 53-67 (387)
476 2qen_A Walker-type ATPase; unk 87.1 0.25 8.6E-06 36.0 1.8 15 1-15 40-54 (350)
477 2afh_E Nitrogenase iron protei 87.1 5.3 0.00018 28.3 8.8 88 40-132 118-208 (289)
478 3lda_A DNA repair protein RAD5 87.1 0.25 8.5E-06 37.4 1.8 13 1-13 187-199 (400)
479 2yl4_A ATP-binding cassette SU 87.1 0.2 6.7E-06 40.0 1.3 15 1-15 379-393 (595)
480 3umf_A Adenylate kinase; rossm 87.1 0.27 9.2E-06 33.9 1.8 23 131-155 191-213 (217)
481 2fna_A Conserved hypothetical 87.0 0.26 8.8E-06 36.0 1.8 15 1-15 39-53 (357)
482 3v9p_A DTMP kinase, thymidylat 87.0 0.21 7.2E-06 34.7 1.2 26 128-155 201-226 (227)
483 3bk7_A ABC transporter ATP-bin 86.9 0.26 8.8E-06 39.5 1.8 16 1-16 391-406 (607)
484 1yqt_A RNAse L inhibitor; ATP- 86.9 0.26 8.8E-06 38.9 1.8 16 1-16 321-336 (538)
485 3lv8_A DTMP kinase, thymidylat 86.8 0.29 9.8E-06 34.3 1.8 25 131-157 206-230 (236)
486 3syl_A Protein CBBX; photosynt 86.7 0.28 9.5E-06 35.3 1.8 14 1-14 76-89 (309)
487 1a7j_A Phosphoribulokinase; tr 86.7 0.16 5.6E-06 36.6 0.6 14 1-14 14-27 (290)
488 1d2n_A N-ethylmaleimide-sensit 86.7 0.28 9.7E-06 34.7 1.8 15 1-15 73-87 (272)
489 1ofh_A ATP-dependent HSL prote 86.6 0.28 9.7E-06 35.2 1.8 15 1-15 59-73 (310)
490 1q3t_A Cytidylate kinase; nucl 86.5 0.29 1E-05 33.9 1.8 14 1-14 25-38 (236)
491 3qf4_B Uncharacterized ABC tra 86.4 0.24 8.1E-06 39.6 1.4 15 1-15 390-404 (598)
492 1w5s_A Origin recognition comp 86.3 0.3 1E-05 36.6 1.9 15 1-15 61-75 (412)
493 1sxj_D Activator 1 41 kDa subu 86.3 0.3 1E-05 35.8 1.8 15 1-15 67-81 (353)
494 2z4s_A Chromosomal replication 86.3 0.29 1E-05 37.5 1.8 15 1-15 139-153 (440)
495 3j16_B RLI1P; ribosome recycli 86.2 0.3 1E-05 39.2 1.8 16 1-16 387-402 (608)
496 4tmk_A Protein (thymidylate ki 86.2 0.32 1.1E-05 33.4 1.8 26 129-156 182-207 (213)
497 3qks_A DNA double-strand break 86.0 0.33 1.1E-05 33.0 1.8 13 1-13 32-44 (203)
498 3ld9_A DTMP kinase, thymidylat 86.0 0.33 1.1E-05 33.6 1.8 14 1-14 30-43 (223)
499 3tmk_A Thymidylate kinase; pho 86.0 0.33 1.1E-05 33.4 1.8 29 128-157 176-204 (216)
500 1c9k_A COBU, adenosylcobinamid 85.9 0.33 1.1E-05 32.4 1.7 15 1-15 8-22 (180)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=100.00 E-value=2.9e-44 Score=252.39 Aligned_cols=181 Identities=40% Similarity=0.685 Sum_probs=138.3
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|||||||+++|+.+.+...+.||+|.++....+..++..+++.||||+|++.|..+++.++++++++++|||++++++|
T Consensus 22 ~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ilv~di~~~~Sf 101 (216)
T 4dkx_A 22 QSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITNVNSF 101 (216)
T ss_dssp TTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEEEEEETTCHHHH
T ss_pred CCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEEEEEeecchhHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHhhCCCC
Q 030225 81 ERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVNPSR 160 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~~~~ 160 (181)
+.+..|+..+.....++.|++|||||+|+.+.+++..+++..++++++++|+++||++|+||+++|+.|++.+.......
T Consensus 102 ~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e~F~~i~~~i~~~~~~~ 181 (216)
T 4dkx_A 102 QQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQ 181 (216)
T ss_dssp HTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeCCCCcCHHHHHHHHHHHHHhhhccc
Confidence 99999999998877788999999999999988999999999999999999999999999999999999999887654332
Q ss_pred c------cccccccccCCCCCCCCCCC
Q 030225 161 Q------TGMKLHTESHGGGRRGFCCS 181 (181)
Q Consensus 161 ~------~~~~~~~~~~~~~~~~~cc~ 181 (181)
. ..+......+..+.+++|||
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~C~C 208 (216)
T 4dkx_A 182 DRSREDMIDIKLEKPQEQPVSEGGCSC 208 (216)
T ss_dssp ---------------------------
T ss_pred ccccccccccccCCCCCCCCCCCCCce
Confidence 2 12223333333444446776
No 2
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=100.00 E-value=3.2e-37 Score=215.43 Aligned_cols=158 Identities=39% Similarity=0.697 Sum_probs=147.1
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|||||||+++|.+..+...+.++++.++....+.+++..+.+.+||+||++.+..++..+++++|++|+|||++++.++
T Consensus 17 ~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vilv~d~~~~~s~ 96 (206)
T 2bcg_Y 17 SGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESF 96 (206)
T ss_dssp TTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEEEEEETTCHHHH
T ss_pred CCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEEEEEEECcCHHHH
Confidence 68999999999999999888889999999888888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHhhCC
Q 030225 81 ERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVNP 158 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~~ 158 (181)
+.+..|+..+......+.|+++|+||+|+.+.+.+..+++..++..++++++++||++|.|++++|++|.+.+.+...
T Consensus 97 ~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~~~ 174 (206)
T 2bcg_Y 97 NGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMS 174 (206)
T ss_dssp HHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHHHh
Confidence 999999999988766789999999999998777888888899999999999999999999999999999999987654
No 3
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=100.00 E-value=1.7e-36 Score=211.74 Aligned_cols=180 Identities=33% Similarity=0.599 Sum_probs=142.5
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|||||||+++|++..+...+.++++.++....+.+++..+.+.+||+||++.+..++..+++++|++|+|||++++.++
T Consensus 17 ~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 96 (207)
T 1vg8_A 17 SGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTF 96 (207)
T ss_dssp TTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEEETTCHHHH
T ss_pred CCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEEEEEEECCCHHHH
Confidence 68999999999999999888889999998888888898889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCC----CCceEEEEEeCCCCcccccCCHHHHHHHHH-HcCCeEEEEecCCCCCHHHHHHHHHHHHHh
Q 030225 81 ERAKKWVQELQRQGN----PNLIMFLVANKVDLEEKRKVKNEEGELYAQ-ENGLSFLETSAKSAHNVNELFYEIAKRLAE 155 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~----~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~ 155 (181)
..+..|+..+..... .+.|+++|+||+|+. .+.+..+++..++. ..+++++++||++|.|++++|++|.+.+.+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 175 (207)
T 1vg8_A 97 KTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE-NRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALK 175 (207)
T ss_dssp HTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS-CCCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 999999998876532 478999999999997 45667777888877 567899999999999999999999999887
Q ss_pred hCCCC------ccccccccccCCCCCCCCCCC
Q 030225 156 VNPSR------QTGMKLHTESHGGGRRGFCCS 181 (181)
Q Consensus 156 ~~~~~------~~~~~~~~~~~~~~~~~~cc~ 181 (181)
..... ...+.........+++++|||
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~c 207 (207)
T 1vg8_A 176 QETEVELYNEFPEPIKLDKNERAKASAESCSC 207 (207)
T ss_dssp HHHHHHHHHHSCCCC-----------------
T ss_pred hccccccccCCCccccCCcccccccCCCCCCC
Confidence 65321 223444432333355558887
No 4
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7e-36 Score=211.14 Aligned_cols=159 Identities=42% Similarity=0.669 Sum_probs=137.4
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|||||||+++|.+..+...+.++++.++....+.+++..+.+.+||+||++.+..++..+++.+|++|+|||++++.++
T Consensus 22 ~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vilV~D~~~~~s~ 101 (223)
T 3cpj_B 22 SGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSY 101 (223)
T ss_dssp TTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEEEEEC-CCHHHH
T ss_pred CCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEEEEEeCCCHHHH
Confidence 68999999999999999888889999988888888999889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHhhCCC
Q 030225 81 ERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVNPS 159 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~~~ 159 (181)
+.+..|+..+......+.|+++|+||+|+...+++..+++..+++.++++++++||+++.|++++|++|++.+.++...
T Consensus 102 ~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~ 180 (223)
T 3cpj_B 102 ENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKVSK 180 (223)
T ss_dssp HHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC-CCCHHHHHHHHHHHHTTCC--
T ss_pred HHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHhhh
Confidence 9999999999887667899999999999987778888889999999999999999999999999999999998876544
No 5
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=100.00 E-value=2.7e-35 Score=205.39 Aligned_cols=155 Identities=32% Similarity=0.566 Sum_probs=140.3
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|||||||+++|.+..+...+.++++..+ ...+.+++..+.+.+||+||++.+..++..+++++|++++|||+++++++
T Consensus 23 ~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~ 101 (206)
T 2bov_A 23 GGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESF 101 (206)
T ss_dssp TTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHH
T ss_pred CCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEEEEEECCCHHHH
Confidence 68999999999999998888888887665 35567888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCC-CCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHhh
Q 030225 81 ERAKKWVQELQRQGN-PNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEV 156 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~-~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~ 156 (181)
..+..|+..+..... .+.|+++|+||+|+.+.+++..+++..++..++++++++||++|.|++++|++|++.+.++
T Consensus 102 ~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~ 178 (206)
T 2bov_A 102 AATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRAR 178 (206)
T ss_dssp HHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHHHHHHHc
Confidence 999999999887643 5789999999999988778888899999999999999999999999999999999998775
No 6
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=100.00 E-value=4.1e-35 Score=204.15 Aligned_cols=158 Identities=37% Similarity=0.631 Sum_probs=137.9
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|||||||+++|.+..+...+.+|++.++....+.+++..+.+.+||+||++.+..++..+++++|++|+|||++++.++
T Consensus 38 ~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~ 117 (201)
T 2hup_A 38 ASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSF 117 (201)
T ss_dssp TTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEEEEEETTBHHHH
T ss_pred CCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCCHHHH
Confidence 68999999999999998888889999888888888999889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCC-eEEEEecCCCCCHHHHHHHHHHHHHhhCC
Q 030225 81 ERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGL-SFLETSAKSAHNVNELFYEIAKRLAEVNP 158 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~~~~~l~~~~~~~~~ 158 (181)
+.+..|+..+......+.|+++|+||+|+.+.+.+..+++..+++..++ +++++||++++|++++|++|++.+.+++.
T Consensus 118 ~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~~~ 196 (201)
T 2hup_A 118 LSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIMRHG 196 (201)
T ss_dssp HTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCCCCHHHHHHHHHHHHHHhcc
Confidence 9999999999887667899999999999987778888899999999999 99999999999999999999999987654
No 7
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=6.1e-35 Score=203.33 Aligned_cols=157 Identities=41% Similarity=0.710 Sum_probs=146.1
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|||||||+++|+++.+...+.++++.++....+.+++..+.+.+||+||++.+..++..+++++|++|+|||++++.++
T Consensus 35 ~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~ 114 (201)
T 2ew1_A 35 AGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESF 114 (201)
T ss_dssp TTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEEEETTCHHHH
T ss_pred CCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHH
Confidence 69999999999999999888889999999888889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHhhC
Q 030225 81 ERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVN 157 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~ 157 (181)
+.+..|+..+......+.|+++|+||+|+.+.+++..+++..+++..+++++++||++|.|++++|++|++.+.++.
T Consensus 115 ~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i~~~~ 191 (201)
T 2ew1_A 115 RCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISEA 191 (201)
T ss_dssp HTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999998876678999999999999877788888889999999999999999999999999999999988754
No 8
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=100.00 E-value=1.4e-34 Score=200.31 Aligned_cols=161 Identities=40% Similarity=0.676 Sum_probs=148.6
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|||||||+++|++..+...+.++++.++....+..++..+.+.+||+||++.+..++..+++.+|++|+|||++++.++
T Consensus 25 ~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 104 (196)
T 3tkl_A 25 SGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESF 104 (196)
T ss_dssp TTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEEEEEETTCHHHH
T ss_pred CCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEEEEEECcCHHHH
Confidence 69999999999999999988889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHhhCCCC
Q 030225 81 ERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVNPSR 160 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~~~~ 160 (181)
+.+..|+..+......+.|+++++||+|+...+.+...++..++..++++++++||+++.|++++|++|.+.+.++..+.
T Consensus 105 ~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i~~~~~~~ 184 (196)
T 3tkl_A 105 NNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPG 184 (196)
T ss_dssp HTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHHHHHHhccc
Confidence 99999999998877678999999999999888888888999999999999999999999999999999999999887654
Q ss_pred c
Q 030225 161 Q 161 (181)
Q Consensus 161 ~ 161 (181)
.
T Consensus 185 ~ 185 (196)
T 3tkl_A 185 A 185 (196)
T ss_dssp -
T ss_pred c
Confidence 3
No 9
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=100.00 E-value=1.5e-34 Score=199.74 Aligned_cols=157 Identities=43% Similarity=0.766 Sum_probs=141.7
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|||||||+++|.+..+...+.++++.++....+.+++..+.+.+||+||++.+..++..+++++|++|+|||+++++++
T Consensus 30 ~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~ 109 (191)
T 2a5j_A 30 TGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETF 109 (191)
T ss_dssp TTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEEEEETTCHHHH
T ss_pred CCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEEEEEEECCCHHHH
Confidence 68999999999999999888888999888888888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHhhC
Q 030225 81 ERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVN 157 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~ 157 (181)
+.+..|+..+......+.|+++++||+|+.+.+.+..+++..+++.++++++++||+++.|++++|++|++.+.++.
T Consensus 110 ~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 186 (191)
T 2a5j_A 110 NHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKI 186 (191)
T ss_dssp HTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999998876678999999999999877788888899999999999999999999999999999999887653
No 10
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=100.00 E-value=1e-34 Score=198.50 Aligned_cols=157 Identities=70% Similarity=1.115 Sum_probs=144.0
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|||||||+++|++..+...+.++++.++....+.+++..+.+.+||+||++.+..++..+++++|++|+|||++++.++
T Consensus 21 ~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 100 (181)
T 2efe_B 21 VGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASF 100 (181)
T ss_dssp TTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEEEEEEETTCHHHH
T ss_pred CCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEEEEEEECCCHHHH
Confidence 68999999999999999888889999988888888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHhhC
Q 030225 81 ERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVN 157 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~ 157 (181)
+.+..|+..+.....++.|+++++||+|+.+.+++..+++..+++.++++++++||+++.|++++|++|.+.+.+.+
T Consensus 101 ~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~ 177 (181)
T 2efe_B 101 ERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLPRVQ 177 (181)
T ss_dssp HHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSCTTHHHHHHHHHHTCC---
T ss_pred HHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 99999999998876678999999999999877788888899999999999999999999999999999998776554
No 11
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=100.00 E-value=3.3e-35 Score=201.46 Aligned_cols=157 Identities=37% Similarity=0.696 Sum_probs=116.6
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|||||||+++|.+..+...+.++++.++....+.+++..+.+.+||+||++.+..++..+++++|++|+|||++++.++
T Consensus 17 ~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 96 (183)
T 2fu5_C 17 SGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSF 96 (183)
T ss_dssp CCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEEEEEETTCHHHH
T ss_pred CCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEEEEEECcCHHHH
Confidence 69999999999999988888889999888888888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHhhC
Q 030225 81 ERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVN 157 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~ 157 (181)
+.+..|+..+......+.|+++++||+|+.+.+.+..+++..+++.++++++++||+++.|++++|++|.+.+.++.
T Consensus 97 ~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~i~~~~ 173 (183)
T 2fu5_C 97 DNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKM 173 (183)
T ss_dssp HHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence 99999999998876678999999999999877788888899999999999999999999999999999999887753
No 12
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=100.00 E-value=2.4e-34 Score=198.27 Aligned_cols=156 Identities=36% Similarity=0.631 Sum_probs=145.1
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|||||||+++|++..+...+.++++.++....+..++..+.+.+||+||++.+..++..+++++|++|+|||++++.++
T Consensus 31 ~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~ 110 (189)
T 2gf9_A 31 SSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESF 110 (189)
T ss_dssp TTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEEEEEEETTCHHHH
T ss_pred CCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEEEEEEECCCHHHH
Confidence 68999999999999999888889999888888888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHhh
Q 030225 81 ERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEV 156 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~ 156 (181)
+.+..|+..+......+.|+++|+||+|+.+.+.+..+++..+++.++++++++||++|.|++++|++|.+.+.++
T Consensus 111 ~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~ 186 (189)
T 2gf9_A 111 AAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVICEK 186 (189)
T ss_dssp HTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 9999999999887667899999999999988778888888999999999999999999999999999999988765
No 13
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=100.00 E-value=1.8e-34 Score=196.86 Aligned_cols=155 Identities=43% Similarity=0.757 Sum_probs=143.9
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|||||||+++|.+..+...+.++++.++....+.+++..+.+.+||+||++.+...+..+++++|++|+|||++++.++
T Consensus 24 ~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 103 (179)
T 1z0f_A 24 MGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTY 103 (179)
T ss_dssp TTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEEEEETTCHHHH
T ss_pred CCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCEEEEEEeCcCHHHH
Confidence 68999999999999999888889999888888888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHh
Q 030225 81 ERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAE 155 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~ 155 (181)
+.+..|+..+......+.|+++++||+|+.+.+.+..+++..+++.++++++++||+++.|++++|++|++.+.+
T Consensus 104 ~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 178 (179)
T 1z0f_A 104 NHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQ 178 (179)
T ss_dssp HTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHhh
Confidence 999999999988766789999999999998777888888999999999999999999999999999999988754
No 14
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=100.00 E-value=1.6e-34 Score=195.46 Aligned_cols=154 Identities=65% Similarity=1.033 Sum_probs=142.6
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|||||||+++|+++.+...+.++++.++....+.+++..+.+.+||+||++.+..++..+++++|++++|||++++.++
T Consensus 15 ~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 94 (170)
T 1r2q_A 15 SAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESF 94 (170)
T ss_dssp TTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHH
T ss_pred CCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEEEEEECCCHHHH
Confidence 68999999999999998888889999988888888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHH
Q 030225 81 ERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLA 154 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~ 154 (181)
+.+..|+..+.....++.|+++++||+|+.+.+.+..+++..+++..+++++++||++|.|++++|++|.+.+.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~i~~~~~ 168 (170)
T 1r2q_A 95 ARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP 168 (170)
T ss_dssp HHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 99999999998876678999999999999877778888889999999999999999999999999999987653
No 15
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=100.00 E-value=1.4e-34 Score=195.96 Aligned_cols=155 Identities=44% Similarity=0.775 Sum_probs=136.6
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|||||||+++|.+..+...+.++++.++....+.+++..+.+.+||+||++.+..++..+++++|++++|||++++.++
T Consensus 15 ~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 94 (170)
T 1z08_A 15 GCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSF 94 (170)
T ss_dssp TTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEEEEETTCHHHH
T ss_pred CCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEEEEEECcCHHHH
Confidence 69999999999999998888889999888888888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHh
Q 030225 81 ERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAE 155 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~ 155 (181)
+.+..|+..+......+.|+++++||+|+.+.+.+..+++..+++..+++++++||+++.|++++|++|.+.+.+
T Consensus 95 ~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 169 (170)
T 1z08_A 95 QKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIE 169 (170)
T ss_dssp HHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHhh
Confidence 999999999877655678999999999998877888888999999999999999999999999999999998754
No 16
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=100.00 E-value=2.6e-34 Score=197.42 Aligned_cols=158 Identities=39% Similarity=0.672 Sum_probs=146.3
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|||||||+++|++..+...+.++++.++....+..++..+.+.+||+||++.+...+..+++++|++|+|||++++.++
T Consensus 19 ~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 98 (186)
T 2bme_A 19 AGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETY 98 (186)
T ss_dssp TTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEEEEETTCHHHH
T ss_pred CCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEEEEEECcCHHHH
Confidence 68999999999999999888889999888888888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHhhCC
Q 030225 81 ERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVNP 158 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~~ 158 (181)
+.+..|+..+......+.|+++++||+|+...+.+...++..+++..+++++++||+++.|++++|++|++.+.++..
T Consensus 99 ~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~ 176 (186)
T 2bme_A 99 NALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIE 176 (186)
T ss_dssp HTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHHHhh
Confidence 999999999887766789999999999998777888888899999999999999999999999999999999887643
No 17
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=1.9e-34 Score=195.10 Aligned_cols=153 Identities=54% Similarity=0.885 Sum_probs=141.3
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|||||||+++|.+..+...+.++++.++....+.+++..+.+.+||+||++.+..++..+++++|++++|||++++.++
T Consensus 12 ~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 91 (170)
T 1ek0_A 12 AAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQSF 91 (170)
T ss_dssp TTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHH
T ss_pred CCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEEEEecCChHHH
Confidence 68999999999999998888889999998888888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEEeCCCCccc---ccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHH
Q 030225 81 ERAKKWVQELQRQGNPNLIMFLVANKVDLEEK---RKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 153 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~ 153 (181)
+.+..|+..+......+.|+++++||+|+... +++..+++..+++.++++++++||+++.|++++|++|.+.+
T Consensus 92 ~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 167 (170)
T 1ek0_A 92 IKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167 (170)
T ss_dssp HHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 99999999998876678999999999999765 67778888889999999999999999999999999998755
No 18
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=4.1e-35 Score=202.53 Aligned_cols=158 Identities=35% Similarity=0.626 Sum_probs=147.5
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|||||||+++|.+..+...+.++++.++....+..++..+.+.+||+||++.+..++..+++++|++|+|||++++.++
T Consensus 32 ~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 111 (191)
T 3dz8_A 32 SSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESF 111 (191)
T ss_dssp TTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEEEEEETTCHHHH
T ss_pred CCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEEEEEECcCHHHH
Confidence 68999999999999998888889999899888888888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHhhCC
Q 030225 81 ERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVNP 158 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~~ 158 (181)
+.+..|+..+......+.|+++|+||+|+.+.+.+..+++..+++.++++++++||++|.|++++|++|++.+.++.+
T Consensus 112 ~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~ 189 (191)
T 3dz8_A 112 NAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMS 189 (191)
T ss_dssp HTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHHhcc
Confidence 999999999988766789999999999998888888899999999999999999999999999999999999988754
No 19
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=100.00 E-value=5.3e-34 Score=192.95 Aligned_cols=154 Identities=46% Similarity=0.790 Sum_probs=143.6
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|||||||+++|.+..+...+.++++.++....+.+++..+.+.+||+||.+.+..++..+++++|++++|||++++.++
T Consensus 15 ~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~ 94 (170)
T 1z0j_A 15 TGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETF 94 (170)
T ss_dssp TTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCHHHH
T ss_pred CCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEEEEEECcCHHHH
Confidence 68999999999999998888889999998888889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHH
Q 030225 81 ERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLA 154 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~ 154 (181)
+.+..|+..+.....+..|+++++||+|+.+.+++..++...+++..+++++++||+++.|++++|++|.+.+.
T Consensus 95 ~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~i~ 168 (170)
T 1z0j_A 95 STLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIP 168 (170)
T ss_dssp HHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHHHHHHh
Confidence 99999999998876788999999999999887888888899999999999999999999999999999988653
No 20
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=100.00 E-value=2.4e-34 Score=200.11 Aligned_cols=158 Identities=41% Similarity=0.685 Sum_probs=135.5
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|||||||+++|+++.+...+.++++.++....+.+++..+.+.+||+||++.+..++..+++++|++|+|||++++.++
T Consensus 34 ~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 113 (200)
T 2o52_A 34 AGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETY 113 (200)
T ss_dssp TTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEEEEEETTCHHHH
T ss_pred CCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEEEEEECcCHHHH
Confidence 68999999999999998888889999888888888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHhhCC
Q 030225 81 ERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVNP 158 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~~ 158 (181)
+.+..|+..+......+.|+++|+||+|+.+.+.+...++..+++..+++++++||++|.|++++|++|++.+.++..
T Consensus 114 ~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~~~ 191 (200)
T 2o52_A 114 NSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKID 191 (200)
T ss_dssp HTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHHh
Confidence 999999999988766789999999999998777888888899999999999999999999999999999999887643
No 21
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=100.00 E-value=3.6e-34 Score=193.81 Aligned_cols=156 Identities=40% Similarity=0.724 Sum_probs=136.9
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|||||||+++|.+..+...+.++++.++....+..++..+.+.+||+||++.+..++..+++++|++++|||++++.++
T Consensus 12 ~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 91 (170)
T 1g16_A 12 SGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTF 91 (170)
T ss_dssp TTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEEEETTCHHHH
T ss_pred CCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEEEEECCCHHHH
Confidence 69999999999999998888889999888888888888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHhhC
Q 030225 81 ERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVN 157 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~ 157 (181)
+.+..|+..+......+.|+++++||+|+ ..+.+..+++..+++.++++++++||++|.|++++|++|.+.+.++.
T Consensus 92 ~~~~~~~~~i~~~~~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~~ 167 (170)
T 1g16_A 92 TNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKI 167 (170)
T ss_dssp HTHHHHHHHHHHHSCTTCEEEEEEECTTC-TTCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhcCCCCcEEEEEECccC-CcCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 99999999998876678999999999999 44567778888899999999999999999999999999999987653
No 22
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=100.00 E-value=3.8e-34 Score=195.83 Aligned_cols=158 Identities=32% Similarity=0.481 Sum_probs=141.8
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|||||||+++|+++.+...+.++++..+ ...+..++..+.+.+||+||++.+..++..+++++|++++|||+++++++
T Consensus 15 ~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~ 93 (181)
T 3t5g_A 15 RSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSF 93 (181)
T ss_dssp TTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEEEEEETTCHHHH
T ss_pred CCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECCCHHHH
Confidence 69999999999999999888889998877 66778899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHhhCCC
Q 030225 81 ERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVNPS 159 (181)
Q Consensus 81 ~~~~~~~~~~~~~~-~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~~~ 159 (181)
+.+..|+..+.... ..+.|+++|+||+|+.+.+.+..+++..+++.++++++++||+++.|++++|++|++.+.+.+.+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~~ 173 (181)
T 3t5g_A 94 EVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEAEKMDGA 173 (181)
T ss_dssp HHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHHHHhcCC
Confidence 99999999887653 35789999999999988888999999999999999999999999999999999999999887653
No 23
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=100.00 E-value=5.4e-34 Score=198.55 Aligned_cols=156 Identities=36% Similarity=0.622 Sum_probs=145.0
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|||||||+++|++..+...+.++++.++....+..++..+.+.+||+||++.+..++..+++++|++|+|||++++.++
T Consensus 17 ~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~ 96 (203)
T 1zbd_A 17 SSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFILMYDITNEESF 96 (203)
T ss_dssp TTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEEEEEETTCHHHH
T ss_pred CCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEEEEEECcCHHHH
Confidence 68999999999999999888889999988888888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHhh
Q 030225 81 ERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEV 156 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~ 156 (181)
+.+..|+..+......+.|+++|+||+|+.+.+.+..+++..+++.++++++++||++|.|++++|++|.+.+.++
T Consensus 97 ~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 172 (203)
T 1zbd_A 97 NAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEK 172 (203)
T ss_dssp HHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 9999999999887667899999999999987778888888999999999999999999999999999999988765
No 24
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=100.00 E-value=8.6e-34 Score=193.75 Aligned_cols=157 Identities=38% Similarity=0.654 Sum_probs=143.3
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|||||||+++|.+..+...+.++++.++....+..++..+.+.+||+||++.+..++..+++++|++++|||++++.++
T Consensus 18 ~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 97 (181)
T 3tw8_B 18 SGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESF 97 (181)
T ss_dssp TTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEEEEEEETTCHHHH
T ss_pred CCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEEEEEEECCCHHHH
Confidence 69999999999999998888889999999888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHhhCC
Q 030225 81 ERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVNP 158 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~~ 158 (181)
..+..|+..+.... ++.|+++|+||+|+.+.+.+...++..++...+++++++||++|.|++++|++|.+.+.+.+.
T Consensus 98 ~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~ 174 (181)
T 3tw8_B 98 VNVKRWLHEINQNC-DDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRAKK 174 (181)
T ss_dssp HHHHHHHHHHHHHC-TTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHHHhh
Confidence 99999999997764 689999999999998888888888999999999999999999999999999999998877643
No 25
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=100.00 E-value=3.4e-34 Score=198.12 Aligned_cols=157 Identities=38% Similarity=0.685 Sum_probs=145.4
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|||||||+++|++..+...+.++++.++....+.+++..+.+.+||+||.+.+..++..+++++|++|+|||++++.++
T Consensus 34 ~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi~v~D~~~~~s~ 113 (193)
T 2oil_A 34 SGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTY 113 (193)
T ss_dssp TTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEEEEEEETTCHHHH
T ss_pred CCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECCCHHHH
Confidence 69999999999999999888889999988888888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHhhC
Q 030225 81 ERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVN 157 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~ 157 (181)
..+..|+..+......+.|+++|+||+|+...+.+..+++..++...+++++++||+++.|++++|++|.+.+.++.
T Consensus 114 ~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 190 (193)
T 2oil_A 114 AVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKV 190 (193)
T ss_dssp HTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence 99999999998766678999999999999877778888889999999999999999999999999999999887753
No 26
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2e-34 Score=199.21 Aligned_cols=156 Identities=49% Similarity=0.785 Sum_probs=143.5
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|||||||+++|++..+...+.++++.++....+.+++..+.+.+||+||++.+..++..+++++|++|+|||++++.++
T Consensus 32 ~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilV~d~~~~~s~ 111 (192)
T 2fg5_A 32 TGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSF 111 (192)
T ss_dssp TTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCTHHH
T ss_pred CCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEEEEEEeCCCHHHH
Confidence 68999999999999998888889999998888888888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHhh
Q 030225 81 ERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEV 156 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~ 156 (181)
+.+..|+..+......+.|+++|+||+|+.+.+.+..+++..+++.++++++++||+++.|++++|++|.+.+.+.
T Consensus 112 ~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 187 (192)
T 2fg5_A 112 YTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQIPPL 187 (192)
T ss_dssp HHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBSHHHHHHHHHHTCC--
T ss_pred HHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHHHHHHHhh
Confidence 9999999999887667899999999999987778888899999999999999999999999999999999877554
No 27
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=5.9e-34 Score=194.58 Aligned_cols=157 Identities=42% Similarity=0.715 Sum_probs=135.0
Q ss_pred CCCchhHHHHHHhhCCCC-CccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhH
Q 030225 1 MGTGKTSLVLRFVKGQFF-DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDS 79 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s 79 (181)
+|||||||+++|.+..+. ..+.++++.++....+..++..+.+.+||+||++.+..++..+++++|++|+|||++++.+
T Consensus 19 ~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s 98 (180)
T 2g6b_A 19 SGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKAS 98 (180)
T ss_dssp TTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEEEEEEETTCHHH
T ss_pred CCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCEEEEEEECCCHHH
Confidence 689999999999998885 4667888988888888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHhhC
Q 030225 80 FERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVN 157 (181)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~ 157 (181)
++.+..|+..+......+.|+++++||+|+.+.+.+..+++..+++.++++++++||+++.|++++|++|.+.+.++.
T Consensus 99 ~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 176 (180)
T 2g6b_A 99 FDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKRRS 176 (180)
T ss_dssp HHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence 999999999998876678999999999999877778888889999999999999999999999999999999887654
No 28
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=100.00 E-value=5e-34 Score=192.72 Aligned_cols=154 Identities=35% Similarity=0.587 Sum_probs=142.7
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|||||||+++|.+..+...+.++++.++....+..++..+.+.+||+||++.+..++..+++++|++++|||++++.++
T Consensus 14 ~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 93 (168)
T 1z2a_A 14 GAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESF 93 (168)
T ss_dssp TTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEEEETTCHHHH
T ss_pred CCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEEEEEECcCHHHH
Confidence 68999999999999999888889999888888888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHh
Q 030225 81 ERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAE 155 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~ 155 (181)
+.+..|+..+.... .+.|+++++||+|+.+.+++..+++..+++..+++++++||+++.|++++|++|.+.+.+
T Consensus 94 ~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 167 (168)
T 1z2a_A 94 EAISSWREKVVAEV-GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHLQ 167 (168)
T ss_dssp HTHHHHHHHHHHHH-CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhC-CCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHhh
Confidence 99999999987765 678999999999998777788888899999999999999999999999999999998764
No 29
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=100.00 E-value=2.1e-34 Score=196.47 Aligned_cols=157 Identities=32% Similarity=0.503 Sum_probs=139.9
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECC-eEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNE-VTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDS 79 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s 79 (181)
||||||||+++|.++.+...+.++++.++....+.+++ ..+.+.+||+||++.+..++..+++++|++++|||++++++
T Consensus 15 ~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s 94 (178)
T 2hxs_A 15 GASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQS 94 (178)
T ss_dssp TTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSEEEEEEETTCHHH
T ss_pred CCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCEEEEEEECCCHHH
Confidence 69999999999999988877888998888888888876 67899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCC---CCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHhh
Q 030225 80 FERAKKWVQELQRQGN---PNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEV 156 (181)
Q Consensus 80 ~~~~~~~~~~~~~~~~---~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~ 156 (181)
++.+..|+..+..... ..+|+++++||+|+.+.+.+..+++..+++.++++++++||++|.|++++|++|.+.+.+.
T Consensus 95 ~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 174 (178)
T 2hxs_A 95 FENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILGI 174 (178)
T ss_dssp HHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence 9999999988876421 3444899999999987778888889999999999999999999999999999999988765
Q ss_pred C
Q 030225 157 N 157 (181)
Q Consensus 157 ~ 157 (181)
.
T Consensus 175 ~ 175 (178)
T 2hxs_A 175 K 175 (178)
T ss_dssp C
T ss_pred h
Confidence 4
No 30
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=100.00 E-value=1.6e-33 Score=192.41 Aligned_cols=157 Identities=27% Similarity=0.509 Sum_probs=142.1
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|||||||+++|.+..+...+.++++..+. ..+..++..+.+.+||+||++.+..++..+++++|++++|||++++.++
T Consensus 18 ~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 96 (181)
T 2fn4_A 18 GGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSF 96 (181)
T ss_dssp TTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEEEEEETTCHHHH
T ss_pred CCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEEEEEEeCCCHHHH
Confidence 689999999999999988888888887765 6677888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH-hCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHhhCC
Q 030225 81 ERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVNP 158 (181)
Q Consensus 81 ~~~~~~~~~~~~-~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~~ 158 (181)
..+..|+..+.. ....+.|+++++||+|+.+.+++..+++..++...+++++++||++|.|++++|++|.+.+.+.+.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~~~ 175 (181)
T 2fn4_A 97 NEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRKYQE 175 (181)
T ss_dssp HHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHhhc
Confidence 999999988855 334688999999999998878888888899999999999999999999999999999999987654
No 31
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=100.00 E-value=3.8e-34 Score=197.90 Aligned_cols=156 Identities=37% Similarity=0.696 Sum_probs=136.3
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|||||||+++|.+..+...+.++++.++....+.+++..+.+.+||+||++.+..++..+++++|++|+|||++++.++
T Consensus 35 ~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~ 114 (192)
T 2il1_A 35 RGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETF 114 (192)
T ss_dssp TTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEEEEEEETTCHHHH
T ss_pred CCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHH
Confidence 68999999999999998888889999888888888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHc-CCeEEEEecCCCCCHHHHHHHHHHHHHhh
Q 030225 81 ERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQEN-GLSFLETSAKSAHNVNELFYEIAKRLAEV 156 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~ 156 (181)
+.+..|+..+......+.|+++|+||+|+.+.+++..+++..+++.. +++++++||++|.|++++|++|.+.+.++
T Consensus 115 ~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~ 191 (192)
T 2il1_A 115 DDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKK 191 (192)
T ss_dssp HTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 99999999988876678999999999999877788888888888874 78999999999999999999999988654
No 32
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=100.00 E-value=6.8e-34 Score=193.94 Aligned_cols=155 Identities=43% Similarity=0.746 Sum_probs=142.7
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|||||||+++|++..+...+.++++.++....+.+++..+.+.+||+||++.+...+..+++++|++++|||++++.++
T Consensus 23 ~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 102 (179)
T 2y8e_A 23 QSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSF 102 (179)
T ss_dssp TTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEEEEEETTCHHHH
T ss_pred CCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHH
Confidence 68999999999999999888889999888888888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHh
Q 030225 81 ERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAE 155 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~ 155 (181)
..+..|+..+......+.|+++++||+|+.+.+++..+++..+++..+++++++||+++.|++++|++|.+.+.+
T Consensus 103 ~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 177 (179)
T 2y8e_A 103 HQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG 177 (179)
T ss_dssp HTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHHHHTCC-
T ss_pred HHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHhh
Confidence 999999999887655789999999999998878888888899999999999999999999999999999886643
No 33
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=100.00 E-value=2e-33 Score=192.53 Aligned_cols=154 Identities=31% Similarity=0.518 Sum_probs=141.6
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|||||||+++|.+..+...+.++++..+ ......++..+.+.+||+||++.+..++..+++++|++++|||++++.++
T Consensus 27 ~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 105 (183)
T 3kkq_A 27 GGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASF 105 (183)
T ss_dssp TTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEEEETTCHHHH
T ss_pred CCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHHH
Confidence 68999999999999999888888888777 67778899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh-CCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecC-CCCCHHHHHHHHHHHHHh
Q 030225 81 ERAKKWVQELQRQ-GNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAK-SAHNVNELFYEIAKRLAE 155 (181)
Q Consensus 81 ~~~~~~~~~~~~~-~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~-~~~gi~~~~~~l~~~~~~ 155 (181)
+.+..|+..+... ...+.|+++++||+|+.+.+.+..+++..+++.++++++++||+ ++.|++++|++|.+.+.+
T Consensus 106 ~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v~~l~~~l~~~i~~ 182 (183)
T 3kkq_A 106 EHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQ 182 (183)
T ss_dssp HTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCCCCCCHHHHHHHHHHHHhh
Confidence 9999999988663 34688999999999998888899999999999999999999999 999999999999998865
No 34
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=100.00 E-value=1.2e-33 Score=192.23 Aligned_cols=157 Identities=32% Similarity=0.399 Sum_probs=129.1
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhh--hhccchhhccCCcEEEEEEECCChh
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER--YHSLAPMYYRGAAAAVVVYDITSMD 78 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--~~~~~~~~~~~~d~~i~v~d~~~~~ 78 (181)
||||||||+++|.+..+...+ ++++.++....+.+++..+.+.+||+||+.. +..+...+++.+|++++|||++++.
T Consensus 13 ~~vGKSsl~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~ 91 (175)
T 2nzj_A 13 PGVGKTSLASLFAGKQERDLH-EQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRG 91 (175)
T ss_dssp TTSSHHHHHHHHHCC-----C-CCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEEEEEEETTCHH
T ss_pred CCccHHHHHHHHhcCCCcccc-CccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEEEEEEECCCHH
Confidence 699999999999998876654 5677777778888999999999999999987 5666788899999999999999999
Q ss_pred HHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHhhC
Q 030225 79 SFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVN 157 (181)
Q Consensus 79 s~~~~~~~~~~~~~~~-~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~ 157 (181)
+++.+..|+..+.... ..+.|+++++||+|+.+.+++..+++..++..++++++++||++|.|++++|++|.+.+..++
T Consensus 92 s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~ 171 (175)
T 2nzj_A 92 SFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFEGVVRQLRLRR 171 (175)
T ss_dssp HHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHHhh
Confidence 9999999998887752 357899999999999877788888888899889999999999999999999999999887654
Q ss_pred C
Q 030225 158 P 158 (181)
Q Consensus 158 ~ 158 (181)
.
T Consensus 172 ~ 172 (175)
T 2nzj_A 172 R 172 (175)
T ss_dssp C
T ss_pred c
Confidence 4
No 35
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=100.00 E-value=8.1e-34 Score=199.43 Aligned_cols=158 Identities=23% Similarity=0.421 Sum_probs=138.3
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|||||||+++|+++.+...+.+|++.++ ...+.+++..+.+.+||++|++.+..++..+++++|++|+|||+++++++
T Consensus 36 ~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 114 (214)
T 3q3j_B 36 VQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETV 114 (214)
T ss_dssp TTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCTHHH
T ss_pred CCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEEEEEEECcCHHHH
Confidence 68999999999999999998889998876 45567788889999999999999999999999999999999999999999
Q ss_pred HH-HHHHHHHHHHhCCCCceEEEEEeCCCCccc------------ccCCHHHHHHHHHHcCC-eEEEEecCCCCC-HHHH
Q 030225 81 ER-AKKWVQELQRQGNPNLIMFLVANKVDLEEK------------RKVKNEEGELYAQENGL-SFLETSAKSAHN-VNEL 145 (181)
Q Consensus 81 ~~-~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~g-i~~~ 145 (181)
.. +..|+..+.... ++.|+++|+||+|+.+. +.+..+++..+++.+++ +++++||++|.| ++++
T Consensus 115 ~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~g~v~~l 193 (214)
T 3q3j_B 115 DSALKKWRTEILDYC-PSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSI 193 (214)
T ss_dssp HHHHTHHHHHHHHHC-TTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEEEeccCCCcccHHHH
Confidence 99 689999998874 68999999999999653 67888999999999999 999999999998 9999
Q ss_pred HHHHHHHHHhhCCCC
Q 030225 146 FYEIAKRLAEVNPSR 160 (181)
Q Consensus 146 ~~~l~~~~~~~~~~~ 160 (181)
|++|++.+.+...+.
T Consensus 194 f~~l~~~~~~~~~~~ 208 (214)
T 3q3j_B 194 FRTASMLCLNKPSPL 208 (214)
T ss_dssp HHHHHHHHHC-----
T ss_pred HHHHHHHHhccCcCC
Confidence 999999988765543
No 36
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=100.00 E-value=2.7e-34 Score=201.42 Aligned_cols=157 Identities=29% Similarity=0.540 Sum_probs=134.5
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|||||||+++|.++.+...+.+|++..+ ...+.+++..+.+.+||+||++.+..++..+++++|++|+|||+++++++
T Consensus 18 ~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~ 96 (212)
T 2j0v_A 18 GAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASY 96 (212)
T ss_dssp TTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEEEEEETTCHHHH
T ss_pred CCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEEEEEECCCHHHH
Confidence 69999999999999998888888888665 44566788889999999999999999999999999999999999999999
Q ss_pred HHHH-HHHHHHHHhCCCCceEEEEEeCCCCccccc--------CCHHHHHHHHHHcCC-eEEEEecCCCCCHHHHHHHHH
Q 030225 81 ERAK-KWVQELQRQGNPNLIMFLVANKVDLEEKRK--------VKNEEGELYAQENGL-SFLETSAKSAHNVNELFYEIA 150 (181)
Q Consensus 81 ~~~~-~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~--------~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~~~~~l~ 150 (181)
+.+. .|+..+.... ++.|+++|+||+|+.+... +..+++..+++.+++ +++++||++|+|++++|++|+
T Consensus 97 ~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~ 175 (212)
T 2j0v_A 97 ENVLKKWMPELRRFA-PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAI 175 (212)
T ss_dssp HHHHHTHHHHHHHHC-TTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEccCCCCCCHHHHHHHHH
Confidence 9986 7998887764 5899999999999865443 367788889988896 999999999999999999999
Q ss_pred HHHHhhCCC
Q 030225 151 KRLAEVNPS 159 (181)
Q Consensus 151 ~~~~~~~~~ 159 (181)
+.+.+....
T Consensus 176 ~~~~~~~~~ 184 (212)
T 2j0v_A 176 KVVLQPPRR 184 (212)
T ss_dssp HHHHCC---
T ss_pred HHHhhhhhh
Confidence 998876543
No 37
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=3.6e-34 Score=198.68 Aligned_cols=157 Identities=34% Similarity=0.440 Sum_probs=136.4
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|||||||+++|.++.+...+.++++..+. ..+..++..+.+.+||+||++.+..++..++.++|++++|||++++.++
T Consensus 17 ~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 95 (199)
T 2gf0_A 17 GGVGKSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSL 95 (199)
T ss_dssp TTSSHHHHHHHHHHSCCCCTTSCCCCEEEE-EEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEEEEEETTCHHHH
T ss_pred CCCcHHHHHHHHHcCCCCCcccCcccccee-EEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEEEEEECcCHHHH
Confidence 699999999999999888778788876554 4456788889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCC--CCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHhhCC
Q 030225 81 ERAKKWVQELQRQGN--PNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVNP 158 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~--~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~~ 158 (181)
+.+..|+..+..... .+.|+++|+||+|+.. +.+..+++..+++.++++++++||++|.|++++|++|++.+.+++.
T Consensus 96 ~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~ 174 (199)
T 2gf0_A 96 EELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ-REVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQELLTLETRRNM 174 (199)
T ss_dssp HTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS-CSSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHCSSSCE
T ss_pred HHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc-cccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHHhhhhc
Confidence 999888887766432 4789999999999965 5667788888899999999999999999999999999998876654
Q ss_pred C
Q 030225 159 S 159 (181)
Q Consensus 159 ~ 159 (181)
.
T Consensus 175 ~ 175 (199)
T 2gf0_A 175 S 175 (199)
T ss_dssp E
T ss_pred c
Confidence 3
No 38
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=100.00 E-value=1.6e-33 Score=194.22 Aligned_cols=155 Identities=36% Similarity=0.637 Sum_probs=139.4
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhh-ccchhhccCCcEEEEEEECCChhH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYH-SLAPMYYRGAAAAVVVYDITSMDS 79 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-~~~~~~~~~~d~~i~v~d~~~~~s 79 (181)
+|||||||+++|+++.+...+.++++.++....+.+++..+.+.+||+||++.+. .++..+++++|++|+|||++++.+
T Consensus 29 ~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~iilv~D~~~~~s 108 (189)
T 1z06_A 29 SNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMAS 108 (189)
T ss_dssp TTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEEEEEETTCHHH
T ss_pred CCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCEEEEEEECcCHHH
Confidence 6899999999999999988888999998888888899999999999999999888 888999999999999999999999
Q ss_pred HHHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCC---CCHHHHHHHHHHHHHh
Q 030225 80 FERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSA---HNVNELFYEIAKRLAE 155 (181)
Q Consensus 80 ~~~~~~~~~~~~~~~-~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~---~gi~~~~~~l~~~~~~ 155 (181)
++.+..|+..+.... ..+.|+++++||+|+.+.+++..+++..+++.++++++++||+++ +|++++|++|++.+.+
T Consensus 109 ~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~i~~l~~~l~~~i~~ 188 (189)
T 1z06_A 109 FHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKLKS 188 (189)
T ss_dssp HHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcCCcccCHHHHHHHHHHHHhh
Confidence 999999999988764 467999999999999887788888899999999999999999999 9999999999887643
No 39
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=100.00 E-value=1.6e-33 Score=190.63 Aligned_cols=156 Identities=24% Similarity=0.278 Sum_probs=126.7
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhc-cchhhccCCcEEEEEEECCChhH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHS-LAPMYYRGAAAAVVVYDITSMDS 79 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-~~~~~~~~~d~~i~v~d~~~~~s 79 (181)
||||||||+++|.+..+.....++.+.+.....+.+++..+.+.+||+||++.+.. ++..+++++|++++|||++++++
T Consensus 11 ~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s 90 (169)
T 3q85_A 11 SGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRS 90 (169)
T ss_dssp TTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEEEEETTCHHH
T ss_pred CCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEEEEECCChHH
Confidence 69999999999998777766667777777888888999999999999999988776 77888999999999999999999
Q ss_pred HHHHHHHHHHHHHhCC-CCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHhh
Q 030225 80 FERAKKWVQELQRQGN-PNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEV 156 (181)
Q Consensus 80 ~~~~~~~~~~~~~~~~-~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~ 156 (181)
++.+..|+..+..... .+.|+++++||+|+.+.+.+..+++..+++.++++++++||+++.|++++|++|++.+..+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i~~~ 168 (169)
T 3q85_A 91 FSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRLR 168 (169)
T ss_dssp HHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHHHHHHHHhc
Confidence 9999999999887643 4799999999999988888999999999999999999999999999999999999988765
No 40
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=100.00 E-value=4.8e-34 Score=198.37 Aligned_cols=155 Identities=32% Similarity=0.561 Sum_probs=130.9
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|||||||+++|++..+...+.++++.++....+.+++..+.+.+||+||++.+..++..+++++|++|+|||++++.++
T Consensus 37 ~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~ 116 (199)
T 2p5s_A 37 AAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSF 116 (199)
T ss_dssp TTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSEEEEEEETTCHHHH
T ss_pred CCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCEEEEEEECCChHHH
Confidence 68999999999999998888889999888888888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEEeCCCCc------ccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHH
Q 030225 81 ERAKKWVQELQRQGNPNLIMFLVANKVDLE------EKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLA 154 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~ 154 (181)
+.+..|+..+......+.|+++|+||+|+. ..+.+..+++..+++..+++++++||++|.|++++|++|++.+.
T Consensus 117 ~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gv~el~~~l~~~i~ 196 (199)
T 2p5s_A 117 LNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREVK 196 (199)
T ss_dssp HTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 999999999887765689999999999996 34667788888999999999999999999999999999999876
Q ss_pred h
Q 030225 155 E 155 (181)
Q Consensus 155 ~ 155 (181)
+
T Consensus 197 ~ 197 (199)
T 2p5s_A 197 K 197 (199)
T ss_dssp C
T ss_pred h
Confidence 4
No 41
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=100.00 E-value=1.2e-33 Score=194.69 Aligned_cols=153 Identities=24% Similarity=0.407 Sum_probs=134.6
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|||||||+++|+++.+...+.+|++..+ ...+.+++..+.+.+||++|++.+..+ ..+++++|++++|||+++++++
T Consensus 30 ~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~ilv~d~~~~~s~ 107 (187)
T 3c5c_A 30 RGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAFLVVYSVDSRQSF 107 (187)
T ss_dssp TTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEEEEEEETTCHHHH
T ss_pred CCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEEEEEEECCCHHHH
Confidence 69999999999999999888889988776 445678889999999999999988775 6799999999999999999999
Q ss_pred HHHHHHHHHHHHhC---CCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEec-CCCCCHHHHHHHHHHHHHh
Q 030225 81 ERAKKWVQELQRQG---NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSA-KSAHNVNELFYEIAKRLAE 155 (181)
Q Consensus 81 ~~~~~~~~~~~~~~---~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa-~~~~gi~~~~~~l~~~~~~ 155 (181)
+.+..|+..+.... ..+.|+++++||+|+.+.+.+..+++..+++.++++++++|| +++.|++++|++|++.+.+
T Consensus 108 ~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv~~lf~~l~~~i~~ 186 (187)
T 3c5c_A 108 DSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAVREARR 186 (187)
T ss_dssp HHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecCccccHHHHHHHHHHHHhh
Confidence 99999999987753 257899999999999887888889999999999999999999 8999999999999998754
No 42
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=100.00 E-value=3.7e-33 Score=193.08 Aligned_cols=156 Identities=28% Similarity=0.472 Sum_probs=140.1
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|||||||+++|.++.+...+.+|++..+.. .+.+++..+.+.+||+||++.+..++..+++++|++|+|||++++.++
T Consensus 32 ~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 110 (194)
T 3reg_A 32 GAVGKTCLLLAFSKGEIPTAYVPTVFENFSH-VMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSF 110 (194)
T ss_dssp TTSSHHHHHHHHHHSCCCSSCCCCSEEEEEE-EEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHH
T ss_pred CCCCHHHHHHHHhcCCCCCccCCeeeeeeEE-EEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEEEEEEECCCHHHH
Confidence 6999999999999999988888998877654 567888999999999999999999999999999999999999999999
Q ss_pred HHH-HHHHHHHHHhCCCCceEEEEEeCCCCcc--cccCCHHHHHHHHHHcCCe-EEEEecCCCCCHHHHHHHHHHHHHhh
Q 030225 81 ERA-KKWVQELQRQGNPNLIMFLVANKVDLEE--KRKVKNEEGELYAQENGLS-FLETSAKSAHNVNELFYEIAKRLAEV 156 (181)
Q Consensus 81 ~~~-~~~~~~~~~~~~~~~p~ivi~nK~D~~~--~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~~~~~~l~~~~~~~ 156 (181)
+.+ ..|+..+... .++.|+++|+||+|+.+ .+.+..+++..+++.+++. ++++||++|.|++++|++|++.+.++
T Consensus 111 ~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 189 (194)
T 3reg_A 111 DNISTKWEPEIKHY-IDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIFSN 189 (194)
T ss_dssp HHHHHTHHHHHHHH-CTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHh-CCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCCHHHHHHHHHHHHHhc
Confidence 997 7788888765 36799999999999975 3678888999999999988 99999999999999999999998876
Q ss_pred CC
Q 030225 157 NP 158 (181)
Q Consensus 157 ~~ 158 (181)
++
T Consensus 190 ~~ 191 (194)
T 3reg_A 190 KP 191 (194)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 43
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=100.00 E-value=7.6e-34 Score=197.67 Aligned_cols=158 Identities=30% Similarity=0.501 Sum_probs=137.0
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|||||||+++|.++.+...+.++++..+ ......++..+.+.+||+||++.+..++..+++++|++++|||+++++++
T Consensus 33 ~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 111 (201)
T 3oes_A 33 RCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSF 111 (201)
T ss_dssp TTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEEEEEEETTCHHHH
T ss_pred CCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEEEEEEeCCCHHHH
Confidence 69999999999999999888888888776 55666777788999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHhhCCC
Q 030225 81 ERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVNPS 159 (181)
Q Consensus 81 ~~~~~~~~~~~~~~-~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~~~ 159 (181)
+.+..|+..+.... ..++|+++|+||+|+...+.+...++..+++.++++++++||++|.|++++|++|.+.+.+....
T Consensus 112 ~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i~~~~~~ 191 (201)
T 3oes_A 112 QVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEIARVENS 191 (201)
T ss_dssp HHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHHHHHHhhhhh
Confidence 99999999987653 35789999999999988888898999999999999999999999999999999999999887553
No 44
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=100.00 E-value=5.1e-33 Score=189.44 Aligned_cols=155 Identities=32% Similarity=0.593 Sum_probs=136.6
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|||||||+++|++..+...+.++++.++....+.+++..+.+.+||+||++.+..++..+++++|++++|||++++.++
T Consensus 16 ~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~ 95 (177)
T 1wms_A 16 GGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSF 95 (177)
T ss_dssp TTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEEEEEETTCHHHH
T ss_pred CCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEEEEEEECcCHHHH
Confidence 69999999999999998888889999988888888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCC----CCceEEEEEeCCCCcccccCCHHHHHHHHH-HcCCeEEEEecCCCCCHHHHHHHHHHHHHh
Q 030225 81 ERAKKWVQELQRQGN----PNLIMFLVANKVDLEEKRKVKNEEGELYAQ-ENGLSFLETSAKSAHNVNELFYEIAKRLAE 155 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~----~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~ 155 (181)
+.+..|+..+..... .+.|+++++||+|+. .+.+..+++..+++ ..+++++++||++|.|++++|++|++.+.+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 174 (177)
T 1wms_A 96 QNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS-ERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLA 174 (177)
T ss_dssp HTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS-SCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHccccccCCCcEEEEEECCccc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 999999998876543 678999999999997 46677788888887 557899999999999999999999998875
Q ss_pred h
Q 030225 156 V 156 (181)
Q Consensus 156 ~ 156 (181)
.
T Consensus 175 ~ 175 (177)
T 1wms_A 175 T 175 (177)
T ss_dssp C
T ss_pred h
Confidence 4
No 45
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=100.00 E-value=1.3e-33 Score=195.78 Aligned_cols=157 Identities=24% Similarity=0.278 Sum_probs=136.5
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhc-cchhhccCCcEEEEEEECCChhH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHS-LAPMYYRGAAAAVVVYDITSMDS 79 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-~~~~~~~~~d~~i~v~d~~~~~s 79 (181)
||||||||+++|.+......+.++++.+.....+.+++..+.+.+||++|+..+.. ++..+++++|++|+|||++++.+
T Consensus 32 ~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~ilv~d~~~~~s 111 (195)
T 3cbq_A 32 SGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRS 111 (195)
T ss_dssp TTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSEEEEEEETTCHHH
T ss_pred CCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCEEEEEEECCCHHH
Confidence 69999999999986554444556667777777788899999999999999987664 77888999999999999999999
Q ss_pred HHHHHHHHHHHHHhCC-CCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHhhC
Q 030225 80 FERAKKWVQELQRQGN-PNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVN 157 (181)
Q Consensus 80 ~~~~~~~~~~~~~~~~-~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~ 157 (181)
|+.+..|+..+..... .+.|+++|+||+|+.+.+.+..+++..+++.++++++++||+++.|++++|++|++.+.+..
T Consensus 112 ~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~lf~~l~~~i~~~~ 190 (195)
T 3cbq_A 112 FSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRLRR 190 (195)
T ss_dssp HHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCHHHHHHHHHHHHHHhc
Confidence 9999999999877543 57899999999999877788888999999999999999999999999999999999887644
No 46
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=100.00 E-value=5.3e-33 Score=191.84 Aligned_cols=157 Identities=31% Similarity=0.549 Sum_probs=142.0
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEE-EEEEEECCe---------EEEEEEEeCCChhhhhccchhhccCCcEEEE
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFF-TQVLSLNEV---------TIKFDIWDTAGQERYHSLAPMYYRGAAAAVV 70 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~---------~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 70 (181)
+|||||||+++|.++.+...+.++++.++. ...+..++. .+.+.+||+||++.+...+..+++++|++|+
T Consensus 20 ~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 99 (195)
T 3bc1_A 20 SGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLL 99 (195)
T ss_dssp TTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHHHHTTTTCSEEEE
T ss_pred CCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHHHHHHcCCCEEEE
Confidence 689999999999999988888899998877 566666665 7899999999999999999999999999999
Q ss_pred EEECCChhHHHHHHHHHHHHHHhCC-CCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Q 030225 71 VYDITSMDSFERAKKWVQELQRQGN-PNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 149 (181)
Q Consensus 71 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l 149 (181)
|||++++.++..+..|+..+..... .+.|+++++||+|+.+.+.+..+++..++...+++++++||+++.|++++|++|
T Consensus 100 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 179 (195)
T 3bc1_A 100 LFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEML 179 (195)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCCEEEEECCCCCCHHHHHHHH
Confidence 9999999999999999999887654 688999999999998777888888999999999999999999999999999999
Q ss_pred HHHHHhhC
Q 030225 150 AKRLAEVN 157 (181)
Q Consensus 150 ~~~~~~~~ 157 (181)
.+.+.++.
T Consensus 180 ~~~~~~~~ 187 (195)
T 3bc1_A 180 LDLIMKRM 187 (195)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99887753
No 47
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=6.5e-33 Score=194.30 Aligned_cols=156 Identities=39% Similarity=0.720 Sum_probs=143.1
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|||||||+++|++..+...+.++++.++....+.+++..+.+.+||+||++.+..++..+++.+|++|+|||++++.++
T Consensus 29 ~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~ 108 (213)
T 3cph_A 29 SGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTF 108 (213)
T ss_dssp TTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEEEEEEETTCHHHH
T ss_pred CCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCCHHHH
Confidence 68999999999999998888889999888888888999889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHhhC
Q 030225 81 ERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVN 157 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~ 157 (181)
+.+..|+..+......+.|+++|+||+|+ ..+.+..+++..+++.++++++++||+++.|++++|++|.+.+.++.
T Consensus 109 ~~~~~~~~~i~~~~~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 184 (213)
T 3cph_A 109 TNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKI 184 (213)
T ss_dssp HTHHHHHHHHHHHTTTCSEEEEEEECTTC-SSCCSCHHHHHHHHHHHTCCEEECBTTTTBSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEEECCCC-cccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999998876668999999999999 44667778888899989999999999999999999999999887753
No 48
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=100.00 E-value=4.5e-33 Score=187.86 Aligned_cols=154 Identities=32% Similarity=0.566 Sum_probs=135.7
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|||||||+++|.+..+...+.++++..+. ..+..++..+.+.+||+||++.+..++..+++++|++++|||+++++++
T Consensus 13 ~~~GKssl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 91 (168)
T 1u8z_A 13 GGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESF 91 (168)
T ss_dssp TTSSHHHHHHHHHHSCCCSCCCTTCCEEEE-EEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEEEETTCHHHH
T ss_pred CCCCHHHHHHHHHhCccCCCCCCCcceEEE-EEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEEEEECCCHHHH
Confidence 699999999999999988888888776653 4457888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCC-CCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHh
Q 030225 81 ERAKKWVQELQRQGN-PNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAE 155 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~-~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~ 155 (181)
+.+..|+..+..... .+.|+++++||+|+.+.+++..+++..+++.++++++++||+++.|++++|++|.+.+.+
T Consensus 92 ~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 167 (168)
T 1u8z_A 92 AATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIRA 167 (168)
T ss_dssp HHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHHHHHHHh
Confidence 999999999877543 579999999999998877888889999999999999999999999999999999998764
No 49
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=7.1e-33 Score=191.48 Aligned_cols=156 Identities=38% Similarity=0.690 Sum_probs=142.2
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|||||||+++|.+..+...+.++++.++....+.+++..+.+.+||+||++.+..++..+++++|++|+|||++++.++
T Consensus 24 ~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~ 103 (195)
T 1x3s_A 24 SGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTF 103 (195)
T ss_dssp TTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEEEEETTCHHHH
T ss_pred CCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECcCHHHH
Confidence 68999999999999999888889999999888889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHhhC
Q 030225 81 ERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVN 157 (181)
Q Consensus 81 ~~~~~~~~~~~~~~-~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~ 157 (181)
..+..|+..+.... ..+.|+++++||+|+. .+.+..+++..+++.++++++++||+++.|++++|++|.+.+.+..
T Consensus 104 ~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 180 (195)
T 1x3s_A 104 VKLDNWLNELETYCTRNDIVNMLVGNKIDKE-NREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTP 180 (195)
T ss_dssp HTHHHHHHHHTTCCSCSCCEEEEEEECTTSS-SCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHTSG
T ss_pred HHHHHHHHHHHHhcCcCCCcEEEEEECCcCc-ccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHhhh
Confidence 99999999887653 2578999999999994 3567778888999999999999999999999999999999988653
No 50
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=100.00 E-value=5.6e-33 Score=187.40 Aligned_cols=154 Identities=27% Similarity=0.336 Sum_probs=116.0
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
||||||||+++|.+..... ..++.+.++ ...+.+++..+.+.+||++|++.+..++..+++.+|++++|||+++++++
T Consensus 11 ~~~GKSsli~~l~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~ 88 (166)
T 3q72_A 11 PGVGKSALARIFGGVEDGP-EAEAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSF 88 (166)
T ss_dssp TTSSHHHHHHHHCCC-----------CEE-EEEEEETTEEEEEEEEECC---------------CCEEEEEEETTCHHHH
T ss_pred CCCCHHHHHHHHcCccccC-CCCccccce-EEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEEECCCHHHH
Confidence 6999999999999766543 346666655 45667899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHhh
Q 030225 81 ERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEV 156 (181)
Q Consensus 81 ~~~~~~~~~~~~~~-~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~ 156 (181)
+.+..|+..+.... ..+.|+++++||+|+.+.+.+..+++..++...+++++++||++|+|++++|++|.+.+.++
T Consensus 89 ~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 165 (166)
T 3q72_A 89 EKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLR 165 (166)
T ss_dssp HHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHHHHHhc
Confidence 99999999987753 36899999999999988888899999999999999999999999999999999999988765
No 51
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=100.00 E-value=2.1e-33 Score=197.53 Aligned_cols=156 Identities=29% Similarity=0.558 Sum_probs=140.6
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCe----------EEEEEEEeCCChhhhhccchhhccCCcEEEE
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEV----------TIKFDIWDTAGQERYHSLAPMYYRGAAAAVV 70 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~----------~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 70 (181)
+|||||||+++|++..+...+.++++.++....+.+++. .+.+.+||+||++.+..++..+++++|++|+
T Consensus 34 ~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iil 113 (217)
T 2f7s_A 34 SGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLL 113 (217)
T ss_dssp TTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHHHHHhcCCCEEEE
Confidence 689999999999999988888889888887777777766 7899999999999999999999999999999
Q ss_pred EEECCChhHHHHHHHHHHHHHHhCC-CCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Q 030225 71 VYDITSMDSFERAKKWVQELQRQGN-PNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 149 (181)
Q Consensus 71 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l 149 (181)
|||++++.+++.+..|+..+..... .++|+++|+||+|+.+.+.+..+++..+++.++++++++||+++.|++++|++|
T Consensus 114 V~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 193 (217)
T 2f7s_A 114 MFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETL 193 (217)
T ss_dssp EEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBTTTTBTHHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCcEEEEECCCCCCHHHHHHHH
Confidence 9999999999999999888765443 678999999999998877888888999999999999999999999999999999
Q ss_pred HHHHHhh
Q 030225 150 AKRLAEV 156 (181)
Q Consensus 150 ~~~~~~~ 156 (181)
.+.+.++
T Consensus 194 ~~~i~~~ 200 (217)
T 2f7s_A 194 LDLIMKR 200 (217)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988775
No 52
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=100.00 E-value=4.5e-33 Score=191.49 Aligned_cols=156 Identities=29% Similarity=0.539 Sum_probs=135.6
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|||||||+++|.+..+...+.++++. .....+..++..+.+.+||+||++.+..++..++.++|++++|||++++.++
T Consensus 13 ~~~GKSsli~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~ 91 (189)
T 4dsu_A 13 DGVGKSALTIQLIQNHFVDEYDPTIED-SYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSF 91 (189)
T ss_dssp TTSSHHHHHHHHHHSSCCCCCCTTCCE-EEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEEEEETTCHHHH
T ss_pred CCCCHHHHHHHHHhCCCCCCCCCCchh-eEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHH
Confidence 699999999999999988888777754 3445667889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHhhCC
Q 030225 81 ERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVNP 158 (181)
Q Consensus 81 ~~~~~~~~~~~~~~-~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~~ 158 (181)
+.+..|+..+.... ..+.|+++++||+|+.+ .....+++..+++.++++++++||++|.|++++|++|.+.+.+...
T Consensus 92 ~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~ 169 (189)
T 4dsu_A 92 EDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS-RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKHKE 169 (189)
T ss_dssp HHHHHHHHHHHHHTTCSCCCEEEEEECTTSSS-CSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCcEEEEEECccCcc-cccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHhhh
Confidence 99999999987743 36899999999999964 5667788889999999999999999999999999999999887654
No 53
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=100.00 E-value=4.3e-33 Score=187.95 Aligned_cols=153 Identities=32% Similarity=0.573 Sum_probs=136.8
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|||||||+++|.++.+...+.++++..+. ..+.+++..+.+.+||+||++.+..++..+++++|++++|||++++.++
T Consensus 12 ~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 90 (167)
T 1c1y_A 12 GGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTF 90 (167)
T ss_dssp TTSSHHHHHHHHHHCCCCCSCCCCSEEEEE-EEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEEEETTCHHHH
T ss_pred CCCCHHHHHHHHHcCCCCCCCCCCccceEE-EEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECCCHHHH
Confidence 699999999999999988888888886654 5567788889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHHHHc-CCeEEEEecCCCCCHHHHHHHHHHHHH
Q 030225 81 ERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQEN-GLSFLETSAKSAHNVNELFYEIAKRLA 154 (181)
Q Consensus 81 ~~~~~~~~~~~~~~-~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~gi~~~~~~l~~~~~ 154 (181)
+.+..|+..+.... ..+.|+++++||+|+.+.+.+..+++..+++.+ +++++++||++|.|++++|++|.+.+.
T Consensus 91 ~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 166 (167)
T 1c1y_A 91 NDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQIN 166 (167)
T ss_dssp HTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHHHHHHHHh
Confidence 99999998887743 368999999999999887788888888998887 799999999999999999999998763
No 54
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=100.00 E-value=1.3e-32 Score=189.09 Aligned_cols=151 Identities=19% Similarity=0.350 Sum_probs=132.5
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|||||||+++|+++.+...+.++.+ .+ ...+.+++..+.+.+||++|++.+. +++++|++++|||++++.++
T Consensus 29 ~~vGKSsL~~~~~~~~~~~~~~~t~~-~~-~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~i~v~d~~~~~s~ 101 (184)
T 3ihw_A 29 LSSGKSALVHRYLTGTYVQEESPEGG-RF-KKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAVVFVFSLEDEISF 101 (184)
T ss_dssp TTSCHHHHHHHHHHSSCCCCCCTTCE-EE-EEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSEEEEEEETTCHHHH
T ss_pred CCCCHHHHHHHHhcCCCCCCcCCCcc-eE-EEEEEECCEEEEEEEEECCCChhhh-----eecCCCEEEEEEECcCHHHH
Confidence 69999999999999999887877743 33 4777889999999999999998766 77889999999999999999
Q ss_pred HHHHHHHHHHHHhCC-CCceEEEEEeCCCCc--ccccCCHHHHHHHHHHcC-CeEEEEecCCCCCHHHHHHHHHHHHHhh
Q 030225 81 ERAKKWVQELQRQGN-PNLIMFLVANKVDLE--EKRKVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYEIAKRLAEV 156 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~-~~~p~ivi~nK~D~~--~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~~~~~l~~~~~~~ 156 (181)
+.+..|+..+..... .+.|+++++||+|+. ..+.+..+++..+++.++ ++++++||++|.|++++|++|++.+.++
T Consensus 102 ~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gv~~lf~~l~~~i~~~ 181 (184)
T 3ihw_A 102 QTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKVVAL 181 (184)
T ss_dssp HHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCCCHHHHHHHHHHHHHHH
Confidence 999999999987643 578999999999994 467788889999999987 8999999999999999999999998877
Q ss_pred CC
Q 030225 157 NP 158 (181)
Q Consensus 157 ~~ 158 (181)
+.
T Consensus 182 ~~ 183 (184)
T 3ihw_A 182 RK 183 (184)
T ss_dssp C-
T ss_pred hc
Confidence 53
No 55
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=100.00 E-value=9.6e-33 Score=191.96 Aligned_cols=156 Identities=28% Similarity=0.453 Sum_probs=131.0
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|||||||+++|++..+...+.+|++..+ ...+..++..+.+.+||+||++.+..++..++.++|++|+|||++++.++
T Consensus 29 ~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~ 107 (201)
T 2q3h_A 29 GAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSF 107 (201)
T ss_dssp TTSSHHHHHHHHHC--------CCSSEEE-EEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEEEEEEETTCHHHH
T ss_pred CCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEEEEEEECCCHHHH
Confidence 68999999999999988888888887655 45567788889999999999999999999999999999999999999999
Q ss_pred HHHH-HHHHHHHHhCCCCceEEEEEeCCCCcc------------cccCCHHHHHHHHHHcCC-eEEEEecCCCCCHHHHH
Q 030225 81 ERAK-KWVQELQRQGNPNLIMFLVANKVDLEE------------KRKVKNEEGELYAQENGL-SFLETSAKSAHNVNELF 146 (181)
Q Consensus 81 ~~~~-~~~~~~~~~~~~~~p~ivi~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~~~ 146 (181)
+.+. .|+..+.... ++.|+++|+||+|+.. .+.+..+++..+++.+++ +++++||+++.|++++|
T Consensus 108 ~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~ 186 (201)
T 2q3h_A 108 QNVSEKWVPEIRCHC-PKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVF 186 (201)
T ss_dssp HHHHHTHHHHHHHHC-SSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEEEEecCCCCCHHHHH
Confidence 9987 7988887764 5899999999999965 256777888899988887 99999999999999999
Q ss_pred HHHHHHHHhhCC
Q 030225 147 YEIAKRLAEVNP 158 (181)
Q Consensus 147 ~~l~~~~~~~~~ 158 (181)
++|++.+.+.+.
T Consensus 187 ~~l~~~~~~~~~ 198 (201)
T 2q3h_A 187 DAAIVAGIQYSD 198 (201)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHhcccc
Confidence 999999887654
No 56
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=100.00 E-value=1.9e-32 Score=190.49 Aligned_cols=154 Identities=48% Similarity=0.828 Sum_probs=137.9
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeE-------------------------------------EEE
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVT-------------------------------------IKF 43 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~-------------------------------------~~~ 43 (181)
+|||||||+++|++..+...+.++++.++....+.+++.. +.+
T Consensus 16 ~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (208)
T 3clv_A 16 SSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHNNYNENLCNIKF 95 (208)
T ss_dssp TTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------CCCTTTCEEEE
T ss_pred CCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccccccCccceeEE
Confidence 6899999999999999988888999988888877777655 899
Q ss_pred EEEeCCChhhhhccchhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHH
Q 030225 44 DIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELY 123 (181)
Q Consensus 44 ~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~ 123 (181)
.+||+||++.+...+..+++.+|++++|||++++.++..+..|+..+.... ..|+++|+||+| ...+.+..+++..+
T Consensus 96 ~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~--~~piilv~NK~D-~~~~~~~~~~~~~~ 172 (208)
T 3clv_A 96 DIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS--NYIIILVANKID-KNKFQVDILEVQKY 172 (208)
T ss_dssp EEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS--CCEEEEEEECTT-CC-CCSCHHHHHHH
T ss_pred EEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC--CCcEEEEEECCC-cccccCCHHHHHHH
Confidence 999999999999999999999999999999999999999999999998764 389999999999 55567788889999
Q ss_pred HHHcCCeEEEEecCCCCCHHHHHHHHHHHHHhhC
Q 030225 124 AQENGLSFLETSAKSAHNVNELFYEIAKRLAEVN 157 (181)
Q Consensus 124 ~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~ 157 (181)
++.++++++++||+++.|++++|++|.+.+.++.
T Consensus 173 ~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 206 (208)
T 3clv_A 173 AQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKNI 206 (208)
T ss_dssp HHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHHH
T ss_pred HHHcCCcEEEEecCCCCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999887653
No 57
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=100.00 E-value=4.5e-33 Score=190.33 Aligned_cols=157 Identities=38% Similarity=0.642 Sum_probs=126.2
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEEC-CeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLN-EVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDS 79 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s 79 (181)
+|||||||+++|++..+...+.++++.++....+.++ +..+.+.+||+||++.+...+..+++++|++|+|||++++.+
T Consensus 17 ~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s 96 (182)
T 1ky3_A 17 SGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASS 96 (182)
T ss_dssp TTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEEEEEETTCHHH
T ss_pred CCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCEEEEEEECCChHH
Confidence 6899999999999999888888999888888877777 556889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCC----CCceEEEEEeCCCCcc-cccCCHHHHHHHHH-HcCCeEEEEecCCCCCHHHHHHHHHHHH
Q 030225 80 FERAKKWVQELQRQGN----PNLIMFLVANKVDLEE-KRKVKNEEGELYAQ-ENGLSFLETSAKSAHNVNELFYEIAKRL 153 (181)
Q Consensus 80 ~~~~~~~~~~~~~~~~----~~~p~ivi~nK~D~~~-~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gi~~~~~~l~~~~ 153 (181)
++.+..|+..+..... .+.|+++++||+|+.. .+.+..+++..+++ ..+++++++||++|.|++++|++|.+.+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 176 (182)
T 1ky3_A 97 FENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSA 176 (182)
T ss_dssp HHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecCCCCCHHHHHHHHHHHH
Confidence 9999999998877543 6789999999999953 45567788888887 4568999999999999999999999988
Q ss_pred HhhC
Q 030225 154 AEVN 157 (181)
Q Consensus 154 ~~~~ 157 (181)
.+++
T Consensus 177 ~~~~ 180 (182)
T 1ky3_A 177 LQQN 180 (182)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 7654
No 58
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=100.00 E-value=2e-33 Score=196.09 Aligned_cols=157 Identities=27% Similarity=0.470 Sum_probs=106.0
Q ss_pred CCCchhHHHHHHhhC--CCCCccccceeeeEEEEEEEECCe--EEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCC
Q 030225 1 MGTGKTSLVLRFVKG--QFFDFQESTIGAAFFTQVLSLNEV--TIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITS 76 (181)
Q Consensus 1 ~~~GKttLl~~l~~~--~~~~~~~~t~~~~~~~~~~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 76 (181)
+|||||||+++|.+. .+...+.+|++.++....+.+++. .+.+.+||+||++.+..++..+++++|++|+|||+++
T Consensus 29 ~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 108 (208)
T 2yc2_C 29 ATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSS 108 (208)
T ss_dssp --------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCCCEEEEEEETTC
T ss_pred CCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhCcEEEEEEECCC
Confidence 689999999999998 777788888887887888888877 8899999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhCC---CCceEEEEEeCCCCcc-cccCCHHHHHHHHHHcCCeEEEEecCC-CCCHHHHHHHHHH
Q 030225 77 MDSFERAKKWVQELQRQGN---PNLIMFLVANKVDLEE-KRKVKNEEGELYAQENGLSFLETSAKS-AHNVNELFYEIAK 151 (181)
Q Consensus 77 ~~s~~~~~~~~~~~~~~~~---~~~p~ivi~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~-~~gi~~~~~~l~~ 151 (181)
+.+++.+..|+..+..... .+.|+++|+||+|+.+ .+.+..+++..+++.++++++++||++ +.|++++|++|.+
T Consensus 109 ~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~gi~~l~~~i~~ 188 (208)
T 2yc2_C 109 MESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIAT 188 (208)
T ss_dssp HHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECCC-------CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCCCCcCHHHHHHHHHH
Confidence 9999999999999988765 5899999999999987 678888899999999999999999999 9999999999999
Q ss_pred HHHhhC
Q 030225 152 RLAEVN 157 (181)
Q Consensus 152 ~~~~~~ 157 (181)
.+.+..
T Consensus 189 ~~~~~~ 194 (208)
T 2yc2_C 189 TFYRNY 194 (208)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887654
No 59
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=100.00 E-value=8e-33 Score=186.45 Aligned_cols=154 Identities=34% Similarity=0.559 Sum_probs=138.1
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
||||||||+++|.++.+...+.++++..+ ...+.+++..+.+.+||+||++.+..++..+++++|++++|||++++.++
T Consensus 12 ~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~ 90 (167)
T 1kao_A 12 GGVGKSALTVQFVTGTFIEKYDPTIEDFY-RKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSF 90 (167)
T ss_dssp TTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHH
T ss_pred CCCCHHHHHHHHHcCCCcccCCCCcceeE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEeCCCHHHH
Confidence 69999999999999998888878877544 56677889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHh
Q 030225 81 ERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAE 155 (181)
Q Consensus 81 ~~~~~~~~~~~~~~-~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~ 155 (181)
+.+..|+..+.... ..+.|+++++||+|+...+++..+++..+++.++++++++||++|.|++++|++|.+.+.+
T Consensus 91 ~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 166 (167)
T 1kao_A 91 QDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQMNY 166 (167)
T ss_dssp HHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHHHHHHHhh
Confidence 99999998887753 3679999999999998777888888899999999999999999999999999999988754
No 60
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.9e-32 Score=191.75 Aligned_cols=156 Identities=28% Similarity=0.321 Sum_probs=132.3
Q ss_pred CCCchhHHHHHHhhCCC--CCccccceeeeEEEEEEEECCeEEEEEEEeCCChhh-hhccchhhccCCcEEEEEEECCCh
Q 030225 1 MGTGKTSLVLRFVKGQF--FDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER-YHSLAPMYYRGAAAAVVVYDITSM 77 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-~~~~~~~~~~~~d~~i~v~d~~~~ 77 (181)
||||||||+++|.+... ...+ +++|.++....+.+++..+.+.+||++|... +..+...+++.+|++|+|||++++
T Consensus 46 ~~vGKSSLl~r~~~~~~~~~~~~-~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~~ilVydvt~~ 124 (211)
T 2g3y_A 46 QGVGKSTLANIFAGVHDSMDSDC-EVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDR 124 (211)
T ss_dssp TTSSHHHHHHHHHCCCCTTCCC----CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSEEEEEEETTCH
T ss_pred CCCCHHHHHHHHHhCCCCCCCcC-CccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCCEEEEEEECCCH
Confidence 79999999999996433 3333 5577777777788899999999999999876 566677888999999999999999
Q ss_pred hHHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHhh
Q 030225 78 DSFERAKKWVQELQRQ-GNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEV 156 (181)
Q Consensus 78 ~s~~~~~~~~~~~~~~-~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~ 156 (181)
++|+.+..|+..+... ...++|+++|+||+|+.+.+.+..+++..++..++++++++||++|+||+++|++|++.+..+
T Consensus 125 ~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v~elf~~l~~~i~~~ 204 (211)
T 2g3y_A 125 ASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVRLR 204 (211)
T ss_dssp HHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 9999999998888653 235789999999999987778888888888888999999999999999999999999988665
Q ss_pred C
Q 030225 157 N 157 (181)
Q Consensus 157 ~ 157 (181)
+
T Consensus 205 ~ 205 (211)
T 2g3y_A 205 R 205 (211)
T ss_dssp C
T ss_pred c
Confidence 4
No 61
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1e-32 Score=191.26 Aligned_cols=156 Identities=33% Similarity=0.489 Sum_probs=139.2
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|||||||+++|+++.+...+.++++..+ ...+.+++..+.+.+||+||++. ..++..+++++|++++|||+++++++
T Consensus 37 ~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~iilv~D~~~~~s~ 114 (196)
T 2atv_A 37 AGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGFVLVYDITDRGSF 114 (196)
T ss_dssp TTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEEEEEETTCHHHH
T ss_pred CCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEEEEEEECcCHHHH
Confidence 69999999999999999888888888665 45567888899999999999987 67788899999999999999999999
Q ss_pred HHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCC-CHHHHHHHHHHHHHhhCC
Q 030225 81 ERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAH-NVNELFYEIAKRLAEVNP 158 (181)
Q Consensus 81 ~~~~~~~~~~~~~~-~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-gi~~~~~~l~~~~~~~~~ 158 (181)
+.+..|+..+.... ..+.|+++++||+|+.+.+++..+++..+++.++++++++||+++. |++++|++|++.+.++++
T Consensus 115 ~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~l~~~l~~~i~~~~~ 194 (196)
T 2atv_A 115 EEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRRRRM 194 (196)
T ss_dssp HTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHHHHHHHHHhhcc
Confidence 99999999887743 3688999999999998878888889999999999999999999999 999999999999887643
No 62
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=100.00 E-value=1.2e-32 Score=189.10 Aligned_cols=153 Identities=28% Similarity=0.491 Sum_probs=135.2
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|||||||+++|.+..+...+.++++..+ ...+.+++..+.+.+||+||++.+..++..+++++|++|+|||++++.++
T Consensus 16 ~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~ 94 (184)
T 1m7b_A 16 SQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETL 94 (184)
T ss_dssp TTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHH
T ss_pred CCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEEEEEECCCHHHH
Confidence 69999999999999999888888888766 34567788889999999999999999999999999999999999999999
Q ss_pred HHH-HHHHHHHHHhCCCCceEEEEEeCCCCccc------------ccCCHHHHHHHHHHcC-CeEEEEecC-CCCCHHHH
Q 030225 81 ERA-KKWVQELQRQGNPNLIMFLVANKVDLEEK------------RKVKNEEGELYAQENG-LSFLETSAK-SAHNVNEL 145 (181)
Q Consensus 81 ~~~-~~~~~~~~~~~~~~~p~ivi~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~-~~~gi~~~ 145 (181)
+.+ ..|+..+.... ++.|+++++||+|+.+. +.+..+++..+++.++ ++++++||+ ++.|++++
T Consensus 95 ~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~gi~~l 173 (184)
T 1m7b_A 95 DSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDI 173 (184)
T ss_dssp HHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBTTTBHHHHHHH
T ss_pred HHHHHHHHHHHHHHC-CCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEeeecCCCcCHHHH
Confidence 998 78888887764 68999999999999642 5677888899998888 799999999 68999999
Q ss_pred HHHHHHHHHh
Q 030225 146 FYEIAKRLAE 155 (181)
Q Consensus 146 ~~~l~~~~~~ 155 (181)
|++|++.+.+
T Consensus 174 ~~~i~~~~l~ 183 (184)
T 1m7b_A 174 FHVATLACVN 183 (184)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhc
Confidence 9999998764
No 63
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=100.00 E-value=2.2e-32 Score=187.70 Aligned_cols=156 Identities=32% Similarity=0.564 Sum_probs=140.0
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|||||||+++|.+..+...+.++++..+ ...+..++..+.+.+||+||++.+..++..+++.+|++++|||+++++++
T Consensus 27 ~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 105 (187)
T 2a9k_A 27 GGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESF 105 (187)
T ss_dssp TTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHH
T ss_pred CCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEEEEEEECcCHHHH
Confidence 68999999999999998888888877665 34557788889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCC-CCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHhhC
Q 030225 81 ERAKKWVQELQRQGN-PNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVN 157 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~-~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~ 157 (181)
..+..|+..+..... .+.|+++|+||+|+.+.+++..+++..+++.++++++++||+++.|++++|++|.+.+.+++
T Consensus 106 ~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 183 (187)
T 2a9k_A 106 AATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARK 183 (187)
T ss_dssp HHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHHHHHHHHhh
Confidence 999999999877543 47899999999999887788888899999999999999999999999999999999987754
No 64
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2.8e-32 Score=188.58 Aligned_cols=152 Identities=25% Similarity=0.475 Sum_probs=135.1
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|||||||+++|.++.+...+.+|++..+ ...+.+++..+.+.+||+||++.+..++..+++++|++|+|||+++++++
T Consensus 27 ~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 105 (194)
T 2atx_A 27 GAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASF 105 (194)
T ss_dssp TTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEEEEETTCHHHH
T ss_pred CCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEEEEEECCCHHHH
Confidence 68999999999999998888888887665 44566788889999999999999999999999999999999999999999
Q ss_pred HHHH-HHHHHHHHhCCCCceEEEEEeCCCCccc------------ccCCHHHHHHHHHHcCC-eEEEEecCCCCCHHHHH
Q 030225 81 ERAK-KWVQELQRQGNPNLIMFLVANKVDLEEK------------RKVKNEEGELYAQENGL-SFLETSAKSAHNVNELF 146 (181)
Q Consensus 81 ~~~~-~~~~~~~~~~~~~~p~ivi~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~~~ 146 (181)
..+. .|+..+.... ++.|+++++||+|+.+. +.+..+++..+++.+++ +++++||++|+|++++|
T Consensus 106 ~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~ 184 (194)
T 2atx_A 106 QNVKEEWVPELKEYA-PNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVF 184 (194)
T ss_dssp HHHHHTHHHHHHHHS-TTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECCTTTCTTHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEEEeeCCCCCCHHHHH
Confidence 9987 7988887764 58899999999999653 46778888999999997 89999999999999999
Q ss_pred HHHHHHHH
Q 030225 147 YEIAKRLA 154 (181)
Q Consensus 147 ~~l~~~~~ 154 (181)
++|++.+.
T Consensus 185 ~~l~~~i~ 192 (194)
T 2atx_A 185 DEAIIAIL 192 (194)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99998875
No 65
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=100.00 E-value=2.4e-32 Score=187.41 Aligned_cols=155 Identities=26% Similarity=0.484 Sum_probs=136.2
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|||||||+++|.++.+...+.++++..+ ...+.+++..+.+.+||+||++.+..++..+++++|++++|||++++.++
T Consensus 14 ~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 92 (186)
T 1mh1_A 14 GAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASF 92 (186)
T ss_dssp TTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHH
T ss_pred CCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEEEEECCChhhH
Confidence 69999999999999998888888887655 44567889999999999999999999999999999999999999999999
Q ss_pred HHHH-HHHHHHHHhCCCCceEEEEEeCCCCccc------------ccCCHHHHHHHHHHcCC-eEEEEecCCCCCHHHHH
Q 030225 81 ERAK-KWVQELQRQGNPNLIMFLVANKVDLEEK------------RKVKNEEGELYAQENGL-SFLETSAKSAHNVNELF 146 (181)
Q Consensus 81 ~~~~-~~~~~~~~~~~~~~p~ivi~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~~~ 146 (181)
..+. .|+..+.... ++.|+++++||+|+.+. +.+..+++..+++..++ +++++||++|.|++++|
T Consensus 93 ~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~ 171 (186)
T 1mh1_A 93 ENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 171 (186)
T ss_dssp HHHHHTHHHHHHHHS-TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEecCCCccCHHHHH
Confidence 9987 7888887764 48899999999998653 46677888889998887 99999999999999999
Q ss_pred HHHHHHHHhhC
Q 030225 147 YEIAKRLAEVN 157 (181)
Q Consensus 147 ~~l~~~~~~~~ 157 (181)
++|.+.+.+..
T Consensus 172 ~~l~~~~~~~~ 182 (186)
T 1mh1_A 172 DEAIRAVLCPP 182 (186)
T ss_dssp HHHHHHHSCCC
T ss_pred HHHHHHHhccc
Confidence 99999886543
No 66
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=100.00 E-value=4e-32 Score=185.34 Aligned_cols=150 Identities=23% Similarity=0.350 Sum_probs=128.0
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|||||||+++|.++.+.. +.+|++..+ ...+.+++..+.+.+||++|++. ..+++++|++|+|||+++++++
T Consensus 16 ~~vGKTsli~~l~~~~~~~-~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~ilv~D~~~~~s~ 88 (178)
T 2iwr_A 16 ARSGKSSLIHRFLTGSYQV-LEKTESEQY-KKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVIFVFSLEDENSF 88 (178)
T ss_dssp GGGCHHHHHHHHHHSCCCC-CSSCSSSEE-EEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEEEEEETTCHHHH
T ss_pred CCCCHHHHHHHHHhCCCCC-cCCCcceeE-EEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEEEEEECcCHHHH
Confidence 6899999999999999877 678887554 56677888999999999999875 4578889999999999999999
Q ss_pred HHHHHHHHHHHHh---CCCCceEEEEEeCCCCc--ccccCCHHHHHHHHHHc-CCeEEEEecCCCCCHHHHHHHHHHHHH
Q 030225 81 ERAKKWVQELQRQ---GNPNLIMFLVANKVDLE--EKRKVKNEEGELYAQEN-GLSFLETSAKSAHNVNELFYEIAKRLA 154 (181)
Q Consensus 81 ~~~~~~~~~~~~~---~~~~~p~ivi~nK~D~~--~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~gi~~~~~~l~~~~~ 154 (181)
+.+..|+..+... ..++.|+++++||+|+. ..+.+..+++..+++.. +++++++||++|.|++++|++|++.+.
T Consensus 89 ~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~ 168 (178)
T 2iwr_A 89 QAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQKVV 168 (178)
T ss_dssp HHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccCCHHHHHHHHHHHHH
Confidence 9999977666543 23678999999999994 45677888888888876 689999999999999999999999887
Q ss_pred hhC
Q 030225 155 EVN 157 (181)
Q Consensus 155 ~~~ 157 (181)
+..
T Consensus 169 ~~~ 171 (178)
T 2iwr_A 169 TLR 171 (178)
T ss_dssp HHH
T ss_pred HHH
Confidence 753
No 67
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=100.00 E-value=2.5e-32 Score=190.63 Aligned_cols=153 Identities=28% Similarity=0.491 Sum_probs=135.4
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|||||||+++|.+..+...+.+|++..+ ...+.+++..+.+.+||+||++.|..++..+++++|++|+|||++++.++
T Consensus 37 ~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~ 115 (205)
T 1gwn_A 37 SQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETL 115 (205)
T ss_dssp TTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHH
T ss_pred CCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEEEEEECCCHHHH
Confidence 69999999999999999888888888776 34567788889999999999999999999999999999999999999999
Q ss_pred HHH-HHHHHHHHHhCCCCceEEEEEeCCCCccc------------ccCCHHHHHHHHHHcC-CeEEEEecC-CCCCHHHH
Q 030225 81 ERA-KKWVQELQRQGNPNLIMFLVANKVDLEEK------------RKVKNEEGELYAQENG-LSFLETSAK-SAHNVNEL 145 (181)
Q Consensus 81 ~~~-~~~~~~~~~~~~~~~p~ivi~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~-~~~gi~~~ 145 (181)
+.+ ..|+..+.... ++.|+++|+||+|+.+. +.+..+++..+++.++ ++++++||+ ++.|++++
T Consensus 116 ~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~gv~~l 194 (205)
T 1gwn_A 116 DSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDI 194 (205)
T ss_dssp HHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHC-CCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEEeeeccCCcCHHHH
Confidence 998 78988887764 67999999999999642 5677888899998888 799999999 68999999
Q ss_pred HHHHHHHHHh
Q 030225 146 FYEIAKRLAE 155 (181)
Q Consensus 146 ~~~l~~~~~~ 155 (181)
|++|++.+.+
T Consensus 195 f~~l~~~~l~ 204 (205)
T 1gwn_A 195 FHVATLACVN 204 (205)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 9999998765
No 68
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=100.00 E-value=1.3e-32 Score=193.67 Aligned_cols=159 Identities=30% Similarity=0.483 Sum_probs=139.4
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECC-eEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNE-VTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDS 79 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s 79 (181)
+|||||||+++|+++.+...+.++++.+.........+ ..+.+.+||+||++.+..++..++.++|++|+|||++++.+
T Consensus 20 ~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s 99 (218)
T 4djt_A 20 GGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRIT 99 (218)
T ss_dssp TTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSEEEEEEETTCHHH
T ss_pred CCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCEEEEEEeCCCHHH
Confidence 69999999999999988888888888877777665554 44889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHhhCCC
Q 030225 80 FERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVNPS 159 (181)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~~~ 159 (181)
++.+..|+..+......+.|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++|++|.+.+.+....
T Consensus 100 ~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~~~ 179 (218)
T 4djt_A 100 CQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFTGRPDL 179 (218)
T ss_dssp HHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTHHHHHHHHHHHCCTTC
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHhccccc
Confidence 99999999999887666789999999999988778888888888888999999999999999999999999999886554
No 69
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=100.00 E-value=1.1e-31 Score=186.87 Aligned_cols=153 Identities=32% Similarity=0.531 Sum_probs=135.2
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|||||||+++|.+..+...+.++++.++.. .+.+++..+.+.+||+||++.+..++..+++++|++++|||++++.++
T Consensus 34 ~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 112 (201)
T 2gco_A 34 GACGKTCLLIVFSKDQFPEVYVPTVFENYIA-DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSL 112 (201)
T ss_dssp TTSSHHHHHHHHHHSSCCSSCCCSSCCCCEE-EEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHH
T ss_pred CCCCHHHHHHHHHhCcCCcccCCcccceEEE-EEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEEEEEECCCHHHH
Confidence 6899999999999999988888888877653 467788889999999999999999999999999999999999999999
Q ss_pred HHH-HHHHHHHHHhCCCCceEEEEEeCCCCccc------------ccCCHHHHHHHHHHcCC-eEEEEecCCCCCHHHHH
Q 030225 81 ERA-KKWVQELQRQGNPNLIMFLVANKVDLEEK------------RKVKNEEGELYAQENGL-SFLETSAKSAHNVNELF 146 (181)
Q Consensus 81 ~~~-~~~~~~~~~~~~~~~p~ivi~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~~~ 146 (181)
+.+ ..|+..+.... ++.|+++++||+|+.+. +.+..+++..+++..++ +++++||++|.|++++|
T Consensus 113 ~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~ 191 (201)
T 2gco_A 113 ENIPEKWTPEVKHFC-PNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF 191 (201)
T ss_dssp HHHHHTHHHHHHHHS-TTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEeeCCCCCCHHHHH
Confidence 998 67888877654 57899999999998654 45777888899998887 89999999999999999
Q ss_pred HHHHHHHHh
Q 030225 147 YEIAKRLAE 155 (181)
Q Consensus 147 ~~l~~~~~~ 155 (181)
++|.+.+.+
T Consensus 192 ~~i~~~~l~ 200 (201)
T 2gco_A 192 EMATRAGLQ 200 (201)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhc
Confidence 999988753
No 70
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.4e-31 Score=187.10 Aligned_cols=155 Identities=30% Similarity=0.536 Sum_probs=130.2
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|||||||+++|.+..+...+.++++..+... +..++..+.+.+||+||++.+..++..+++++|++|+|||++++.++
T Consensus 34 ~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 112 (207)
T 2fv8_A 34 GACGKTCLLIVFSKDEFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSL 112 (207)
T ss_dssp TTSSHHHHHHHHHHSSCC-------CCEEEEE-EEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEEEEEETTCHHHH
T ss_pred CCCCHHHHHHHHhcCCCCCcCCCcccceEEEE-EEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEEEEEECCCHHHH
Confidence 69999999999999998888888887766443 67888889999999999999999999999999999999999999999
Q ss_pred HHH-HHHHHHHHHhCCCCceEEEEEeCCCCccc------------ccCCHHHHHHHHHHcCC-eEEEEecCCCCCHHHHH
Q 030225 81 ERA-KKWVQELQRQGNPNLIMFLVANKVDLEEK------------RKVKNEEGELYAQENGL-SFLETSAKSAHNVNELF 146 (181)
Q Consensus 81 ~~~-~~~~~~~~~~~~~~~p~ivi~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~~~ 146 (181)
+.+ ..|+..+.... ++.|+++|+||+|+... +.+..+++..++...++ +++++||++|.|++++|
T Consensus 113 ~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~ 191 (207)
T 2fv8_A 113 ENIPEKWVPEVKHFC-PNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVF 191 (207)
T ss_dssp HHHHHTHHHHHHHHS-TTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEeeCCCCCCHHHHH
Confidence 998 67888887754 68899999999999654 45677788888988887 89999999999999999
Q ss_pred HHHHHHHHhhC
Q 030225 147 YEIAKRLAEVN 157 (181)
Q Consensus 147 ~~l~~~~~~~~ 157 (181)
++|++.+.+.+
T Consensus 192 ~~l~~~i~~~~ 202 (207)
T 2fv8_A 192 ETATRAALQKR 202 (207)
T ss_dssp HHHHHHHHSCC
T ss_pred HHHHHHHHHHh
Confidence 99999887653
No 71
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=100.00 E-value=4.8e-32 Score=190.38 Aligned_cols=155 Identities=30% Similarity=0.526 Sum_probs=115.8
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|||||||+++|+++.+...+.++++..+ ...+.+++..+.+.+||+||++.+..++..+++++|++++|||++++.++
T Consensus 43 ~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 121 (214)
T 2j1l_A 43 GGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSF 121 (214)
T ss_dssp TTSSHHHHHHHHHC-------CCCCCEEE-EEEEEETTEEEEEEEEEC---------------CEEEEEEEEETTCHHHH
T ss_pred CCCCHHHHHHHHHcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEEEEEECcCHHHH
Confidence 68999999999999888887778876554 45567888999999999999999999999999999999999999999999
Q ss_pred HHHH-HHHHHHHHhCCCCceEEEEEeCCCCccc------------ccCCHHHHHHHHHHcCC-eEEEEecCCCCCHHHHH
Q 030225 81 ERAK-KWVQELQRQGNPNLIMFLVANKVDLEEK------------RKVKNEEGELYAQENGL-SFLETSAKSAHNVNELF 146 (181)
Q Consensus 81 ~~~~-~~~~~~~~~~~~~~p~ivi~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~~~ 146 (181)
+.+. .|+..+.... ++.|+++|+||+|+... +.+..+++..+++..++ +++++||++|.|++++|
T Consensus 122 ~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~ 200 (214)
T 2j1l_A 122 DNIFNRWYPEVNHFC-KKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVF 200 (214)
T ss_dssp HHHHHTHHHHHHHHC-SSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEecCCCCCCHHHHH
Confidence 9986 7888887764 67899999999999654 26777888899999997 99999999999999999
Q ss_pred HHHHHHHHhhC
Q 030225 147 YEIAKRLAEVN 157 (181)
Q Consensus 147 ~~l~~~~~~~~ 157 (181)
++|++.+.+.+
T Consensus 201 ~~l~~~~~~~~ 211 (214)
T 2j1l_A 201 QEAAEVALSSR 211 (214)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHHhh
Confidence 99999988654
No 72
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=100.00 E-value=2.5e-31 Score=183.17 Aligned_cols=156 Identities=29% Similarity=0.528 Sum_probs=127.0
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|||||||+++|.++.+...+.++++..+ ...+..++..+.+.+||+||++.+..++..+++.+|++++|||++++.++
T Consensus 30 ~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 108 (190)
T 3con_A 30 GGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSF 108 (190)
T ss_dssp TTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC-----------CTTCSEEEEEEETTCHHHH
T ss_pred CCCCHHHHHHHHHcCCCccccCCccceEE-EEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEEEEEECcCHHHH
Confidence 68999999999999988877777776554 35567788889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCC-CCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHhhCC
Q 030225 81 ERAKKWVQELQRQGN-PNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVNP 158 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~-~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~~ 158 (181)
..+..|+..+..... .+.|+++++||+|+.. +....+++.++++.++++++++||+++.|++++|++|.+.+.+.+.
T Consensus 109 ~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~ 186 (190)
T 3con_A 109 ADINLYREQIKRVKDSDDVPMVLVGNKCDLPT-RTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIRQYRM 186 (190)
T ss_dssp HHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHhCCCCCeEEEEEECCcCCc-ccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 999999988877542 5789999999999866 5667788889999999999999999999999999999999887654
No 73
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2.6e-32 Score=184.88 Aligned_cols=154 Identities=34% Similarity=0.468 Sum_probs=134.4
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|||||||+++|.++.+...+.++++..+. .....++..+.+.+||+||++.+..++..+++.+|++++|||++++.++
T Consensus 12 ~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~ 90 (172)
T 2erx_A 12 GGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSL 90 (172)
T ss_dssp TTSSHHHHHHHHHTCCCCSSCCCCSCEEEE-EEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEEEETTCHHHH
T ss_pred CCCCHHHHHHHHHcCCCCCCCCCCccccEE-EEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEEEECcCHHHH
Confidence 699999999999999888777788776553 4456788889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCC--CCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHh
Q 030225 81 ERAKKWVQELQRQGN--PNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAE 155 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~--~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~ 155 (181)
+.+..|+..+..... ++.|+++++||+|+.+.+++...++..++..++++++++||+++.|++++|++|.+.+..
T Consensus 91 ~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 167 (172)
T 2erx_A 91 EELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLEKR 167 (172)
T ss_dssp HTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHTCCS
T ss_pred HHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHHHHHHHHhh
Confidence 999999888876432 578999999999998777888888888999899999999999999999999999886543
No 74
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=100.00 E-value=1.4e-34 Score=201.03 Aligned_cols=156 Identities=42% Similarity=0.708 Sum_probs=133.2
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|||||||+++|++..+...+.++++.++....+..++..+.+.+||+||++.+..++..+++++|++|+|||++++.++
T Consensus 42 ~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 121 (199)
T 3l0i_B 42 SGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESF 121 (199)
T ss_dssp TTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEEECC-CCCSHHH
T ss_pred CCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEEEEEECCCHHHH
Confidence 68999999999999998888889999999889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHhh
Q 030225 81 ERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEV 156 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~ 156 (181)
+.+..|+..+......+.|+++|+||+|+.+.+.+..+++..+++.++++++++||+++.|++++|++|.+.+.++
T Consensus 122 ~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l~~~l~~~l~~~ 197 (199)
T 3l0i_B 122 NNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKR 197 (199)
T ss_dssp HHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC---HHHHHHHHHHTTTTTTT
T ss_pred HHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 9999999999777667899999999999987777777778888999999999999999999999999998876543
No 75
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=100.00 E-value=2.8e-31 Score=178.58 Aligned_cols=153 Identities=29% Similarity=0.556 Sum_probs=135.0
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|||||||+++|.+..+...+.++++..+ ...+..++..+.+.+||+||+..+..++..++..+|++++|||++++.++
T Consensus 12 ~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~ 90 (166)
T 2ce2_X 12 GGVGKSALTIQLIQNHFVDECDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSF 90 (166)
T ss_dssp TTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEEEETTCHHHH
T ss_pred CCCCHHHHHHHHHhCcCccccCCccceEE-EEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEEEECCCHHHH
Confidence 69999999999999988887777776544 45567788889999999999999888899999999999999999999999
Q ss_pred HHHHHHHHHHHHhCC-CCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHh
Q 030225 81 ERAKKWVQELQRQGN-PNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAE 155 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~-~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~ 155 (181)
..+..|+..+..... .+.|+++++||+|+.. .....++...+++.++++++++||+++.|++++|++|.+.+.+
T Consensus 91 ~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 165 (166)
T 2ce2_X 91 EDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165 (166)
T ss_dssp HHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCCCCCcEEEEEEchhhhh-cccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHh
Confidence 999999998877542 4789999999999876 5667788888999999999999999999999999999998754
No 76
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=100.00 E-value=2.6e-31 Score=183.76 Aligned_cols=157 Identities=27% Similarity=0.344 Sum_probs=130.1
Q ss_pred CCCchhHHHHHHhhCC--CCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhh-hhccchhhccCCcEEEEEEECCCh
Q 030225 1 MGTGKTSLVLRFVKGQ--FFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER-YHSLAPMYYRGAAAAVVVYDITSM 77 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-~~~~~~~~~~~~d~~i~v~d~~~~ 77 (181)
||||||||+++|.+.. +...+ ++++.++....+.+++..+.+.+||++|... +..++..+++.+|++++|||++++
T Consensus 15 ~~vGKSsL~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~~i~v~dv~~~ 93 (192)
T 2cjw_A 15 QGVGKSTLANIFAGVHDSMDSDX-EVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDR 93 (192)
T ss_dssp TTSSHHHHHHHHHHHSCCC-----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSEEEEEEETTCH
T ss_pred CCCCHHHHHHHHhcCcCCcCccc-cccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCEEEEEEECCCH
Confidence 7999999999999633 33433 4567777777788899999999999999875 566778888999999999999999
Q ss_pred hHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHhh
Q 030225 78 DSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEV 156 (181)
Q Consensus 78 ~s~~~~~~~~~~~~~~~-~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~ 156 (181)
++|+.+..|+..+.... ..+.|+++++||+|+...+.+..+++..++..++++++++||++|.||+++|++|++.+...
T Consensus 94 ~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~lf~~l~~~~~~~ 173 (192)
T 2cjw_A 94 ASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQVRLR 173 (192)
T ss_dssp HHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccCCCHHHHHHHHHHHHHhh
Confidence 99999999988887643 35789999999999987777888888888888899999999999999999999999988665
Q ss_pred CC
Q 030225 157 NP 158 (181)
Q Consensus 157 ~~ 158 (181)
..
T Consensus 174 ~~ 175 (192)
T 2cjw_A 174 RD 175 (192)
T ss_dssp HS
T ss_pred cc
Confidence 43
No 77
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.98 E-value=4.1e-32 Score=191.47 Aligned_cols=156 Identities=32% Similarity=0.554 Sum_probs=139.7
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|||||||+++|+.+.+...+.+++|.++......+++..+.+.+||+||++.+..++..+++++|++|+|||++++.++
T Consensus 24 ~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~ 103 (221)
T 3gj0_A 24 GGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTY 103 (221)
T ss_dssp TTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCEEEEEEETTCHHHH
T ss_pred CCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCEEEEEEECCCHHHH
Confidence 69999999999888888888889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHhhCCC
Q 030225 81 ERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVNPS 159 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~~~ 159 (181)
..+..|+..+.... .+.|+++|+||+|+.+... . .+...+++..+++++++||+++.|++++|++|.+.+......
T Consensus 104 ~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~-~-~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~l~~~~~~ 179 (221)
T 3gj0_A 104 KNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRKV-K-AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 179 (221)
T ss_dssp HTHHHHHHHHHHHS-TTCCEEEEEECTTSSSCSS-C-GGGCCHHHHHTCEEEECBGGGTBTTTHHHHHHHHHHHTCTTC
T ss_pred HHHHHHHHHHHHhC-CCCCEEEEEECCccccccc-c-HHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhCccc
Confidence 99999999998874 5889999999999965332 2 255667888899999999999999999999999999876543
No 78
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.98 E-value=2.2e-32 Score=187.08 Aligned_cols=152 Identities=30% Similarity=0.554 Sum_probs=117.4
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|||||||+++|.++.+...+.+|++..+. ..+..++..+.+.+||+||++.+..++..+++++|++++|||++++.++
T Consensus 17 ~~~GKssl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 95 (182)
T 3bwd_D 17 GAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASY 95 (182)
T ss_dssp TTSSHHHHHHHHHHSCCC----------CB-CCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEEEEEETTCHHHH
T ss_pred CCCCHHHHHHHHhcCCCCCCCCCeeeeeEE-EEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEEEEEECCCHHHH
Confidence 689999999999999888888788775543 2244566778889999999999999999999999999999999999999
Q ss_pred HHHH-HHHHHHHHhCCCCceEEEEEeCCCCccccc----------CCHHHHHHHHHHcCC-eEEEEecCCCCCHHHHHHH
Q 030225 81 ERAK-KWVQELQRQGNPNLIMFLVANKVDLEEKRK----------VKNEEGELYAQENGL-SFLETSAKSAHNVNELFYE 148 (181)
Q Consensus 81 ~~~~-~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~~~~~ 148 (181)
+.+. .|+..+.... ++.|+++++||+|+.+... +..+++..+++.+++ +++++||++|+|++++|++
T Consensus 96 ~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 174 (182)
T 3bwd_D 96 ENVSKKWIPELKHYA-PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDA 174 (182)
T ss_dssp HHHHHTHHHHHHHHC-TTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEECCCCCCHHHHHHH
Confidence 9987 7888887764 5889999999999865443 467788889988896 9999999999999999999
Q ss_pred HHHHHH
Q 030225 149 IAKRLA 154 (181)
Q Consensus 149 l~~~~~ 154 (181)
|++.+.
T Consensus 175 l~~~i~ 180 (182)
T 3bwd_D 175 AIRVVL 180 (182)
T ss_dssp HHHHHS
T ss_pred HHHHHh
Confidence 998764
No 79
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.98 E-value=3.8e-31 Score=184.50 Aligned_cols=151 Identities=26% Similarity=0.501 Sum_probs=130.6
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|||||||+++|+++.+...+.++++..+ ...+.+++..+.+.+||+||++.+..++..+++++|++++|||++++.++
T Consensus 39 ~~~GKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 117 (204)
T 4gzl_A 39 GAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASF 117 (204)
T ss_dssp TTSSHHHHHHHHHHSCCCC-CCCCSEEEE-EEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHH
T ss_pred CCCCHHHHHHHHHhCCCCCCcCCeeccee-EEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEECCCHHHH
Confidence 69999999999999999888878876443 55667788889999999999999999999999999999999999999999
Q ss_pred HHHH-HHHHHHHHhCCCCceEEEEEeCCCCcccc------------cCCHHHHHHHHHHcCC-eEEEEecCCCCCHHHHH
Q 030225 81 ERAK-KWVQELQRQGNPNLIMFLVANKVDLEEKR------------KVKNEEGELYAQENGL-SFLETSAKSAHNVNELF 146 (181)
Q Consensus 81 ~~~~-~~~~~~~~~~~~~~p~ivi~nK~D~~~~~------------~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~~~ 146 (181)
+.+. .|+..+.... .+.|+++++||+|+.+.. .+..+++..+++..++ +++++||++|+|++++|
T Consensus 118 ~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~ 196 (204)
T 4gzl_A 118 ENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 196 (204)
T ss_dssp HHHHHTHHHHHHHHC-SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEeeCCCCCCHHHHH
Confidence 9987 7888887765 789999999999986543 3777888889998886 59999999999999999
Q ss_pred HHHHHHH
Q 030225 147 YEIAKRL 153 (181)
Q Consensus 147 ~~l~~~~ 153 (181)
++|++.+
T Consensus 197 ~~l~~~~ 203 (204)
T 4gzl_A 197 DEAIRAV 203 (204)
T ss_dssp HHHHHTT
T ss_pred HHHHHHh
Confidence 9998754
No 80
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.98 E-value=3.9e-32 Score=187.97 Aligned_cols=154 Identities=19% Similarity=0.228 Sum_probs=127.8
Q ss_pred CCCchhHHHHHHhhCCCCCc-----------cccceeeeEEEEEE-EECCeEEEEEEEeCCChhhhhccchhhccCCcEE
Q 030225 1 MGTGKTSLVLRFVKGQFFDF-----------QESTIGAAFFTQVL-SLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA 68 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~-----------~~~t~~~~~~~~~~-~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 68 (181)
||||||||++.+.+ .+... +.+|++.++....+ .+++..+.+.+||+||++.+..++..+++++|++
T Consensus 23 ~~~GKssL~~~l~~-~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 101 (198)
T 3t1o_A 23 GLSGKTTNLKWIYS-KVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGI 101 (198)
T ss_dssp TTSSHHHHHHHHHH-TSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSHHHHHHTTTCCEE
T ss_pred CCCCHHHHHHHHHh-hccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHHHHHHHHhcCCEE
Confidence 69999999965554 44444 33566666655555 6677889999999999999999999999999999
Q ss_pred EEEEECC------ChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCC-eEEEEecCCCCC
Q 030225 69 VVVYDIT------SMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGL-SFLETSAKSAHN 141 (181)
Q Consensus 69 i~v~d~~------~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~g 141 (181)
|+|||++ +.+++..+..|+..+. ....+.|+++|+||+|+.+ .+..+++..+++.+++ +++++||++|+|
T Consensus 102 i~v~D~~~~~~~~~~~s~~~l~~~l~~~~-~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 178 (198)
T 3t1o_A 102 VFVADSAPNRLRANAESMRNMRENLAEYG-LTLDDVPIVIQVNKRDLPD--ALPVEMVRAVVDPEGKFPVLEAVATEGKG 178 (198)
T ss_dssp EEEEECCGGGHHHHHHHHHHHHHHHHHTT-CCTTSSCEEEEEECTTSTT--CCCHHHHHHHHCTTCCSCEEECBGGGTBT
T ss_pred EEEEECCcchhhHhHHHHHHHHHHHHhhc-cccCCCCEEEEEEchhccc--ccCHHHHHHHHHhcCCceEEEEecCCCcC
Confidence 9999999 5677888888888773 2347899999999999965 3677888899998998 999999999999
Q ss_pred HHHHHHHHHHHHHhhCC
Q 030225 142 VNELFYEIAKRLAEVNP 158 (181)
Q Consensus 142 i~~~~~~l~~~~~~~~~ 158 (181)
++++|++|++.+.++..
T Consensus 179 v~~l~~~l~~~i~~~~~ 195 (198)
T 3t1o_A 179 VFETLKEVSRLVLARVA 195 (198)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 99999999999987654
No 81
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.97 E-value=1.7e-31 Score=185.19 Aligned_cols=152 Identities=17% Similarity=0.248 Sum_probs=121.2
Q ss_pred CCCchhHHHHHHhhCCCCC-ccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhH
Q 030225 1 MGTGKTSLVLRFVKGQFFD-FQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDS 79 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s 79 (181)
+|||||||+++|++..+.. .+.+|++..+.. + ++..+.+.+||+||++.+..++..+++++|++|+|||++++++
T Consensus 26 ~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~~--~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s 101 (199)
T 4bas_A 26 DNSGKTTIINQVKPAQSSSKHITATVGYNVET--F--EKGRVAFTVFDMGGAKKFRGLWETYYDNIDAVIFVVDSSDHLR 101 (199)
T ss_dssp TTSCHHHHHHHHSCCC----CCCCCSSEEEEE--E--EETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEETTCGGG
T ss_pred CCCCHHHHHHHHhcCCCcccccccccceeEEE--E--EeCCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCcHHH
Confidence 6899999999999999888 778888854432 2 3455688999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCC--------CCceEEEEEeCCCCcccccCCHHHHHH-----H-HHHcCCeEEEEecCCCCCHHHH
Q 030225 80 FERAKKWVQELQRQGN--------PNLIMFLVANKVDLEEKRKVKNEEGEL-----Y-AQENGLSFLETSAKSAHNVNEL 145 (181)
Q Consensus 80 ~~~~~~~~~~~~~~~~--------~~~p~ivi~nK~D~~~~~~~~~~~~~~-----~-~~~~~~~~~~~Sa~~~~gi~~~ 145 (181)
|..+..|+..+..... .+.|+++|+||+|+.+... .++... . ++..+++++++||++++|++++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l 179 (199)
T 4bas_A 102 LCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKT--AAELVEILDLTTLMGDHPFVIFASNGLKGTGVHEG 179 (199)
T ss_dssp HHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCC--HHHHHHHHTHHHHHTTSCEEEEECBTTTTBTHHHH
T ss_pred HHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCC--HHHHHHHhcchhhccCCeeEEEEeeCCCccCHHHH
Confidence 9999999888866411 3789999999999965422 122111 1 1446789999999999999999
Q ss_pred HHHHHHHHHhhCC
Q 030225 146 FYEIAKRLAEVNP 158 (181)
Q Consensus 146 ~~~l~~~~~~~~~ 158 (181)
|++|++.+.+...
T Consensus 180 ~~~l~~~~~~~~~ 192 (199)
T 4bas_A 180 FSWLQETASRQSG 192 (199)
T ss_dssp HHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988754
No 82
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.97 E-value=7.7e-30 Score=177.17 Aligned_cols=157 Identities=41% Similarity=0.711 Sum_probs=140.3
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|||||||+++|.+..+...+.++++.++....+.+++..+.+.+||++|++.+..++..++++++++++|+|+++..++
T Consensus 14 ~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~ 93 (199)
T 2f9l_A 14 SGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTY 93 (199)
T ss_dssp TTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEEEETTCHHHH
T ss_pred CCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEEEEECcCHHHH
Confidence 69999999999999998888889998888888888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHhhC
Q 030225 81 ERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVN 157 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~ 157 (181)
..+..|+..+........|+++++||+|+.+.+.+...++..++...++.++++||+++.|++++|++|.+.+.+..
T Consensus 94 ~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~~l~~~~~~~~ 170 (199)
T 2f9l_A 94 ENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIV 170 (199)
T ss_dssp HTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence 99989988887655567899999999999877778888889999999999999999999999999999999887653
No 83
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.97 E-value=3.9e-31 Score=179.06 Aligned_cols=150 Identities=22% Similarity=0.343 Sum_probs=119.8
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|||||||+++|.++.+.. +.+|++... ..+.++ .+.+.+||+||++.+..++..+++++|++++|||++++.++
T Consensus 16 ~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~ 90 (171)
T 1upt_A 16 DGAGKTTILYRLQVGEVVT-TIPTIGFNV--ETVTYK--NLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRI 90 (171)
T ss_dssp TTSSHHHHHHHHHHSSCCC-CCCCSSEEE--EEEEET--TEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEETTCCTTH
T ss_pred CCCCHHHHHHHHhcCCCCC-cCCcCccce--EEEEEC--CEEEEEEECCCChhhhHHHHHHhccCCEEEEEEECCCHHHH
Confidence 6899999999999988754 557777543 334444 46788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHH-----HHHHcCCeEEEEecCCCCCHHHHHHHHHHHHH
Q 030225 81 ERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGEL-----YAQENGLSFLETSAKSAHNVNELFYEIAKRLA 154 (181)
Q Consensus 81 ~~~~~~~~~~~~~~-~~~~p~ivi~nK~D~~~~~~~~~~~~~~-----~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~ 154 (181)
..+..|+..+.... ..+.|+++++||+|+.+... ..+... .+...+++++++||+++.|++++|++|.+.+.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 168 (171)
T 1upt_A 91 GISKSELVAMLEEEELRKAILVVFANKQDMEQAMT--SSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLK 168 (171)
T ss_dssp HHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCC--HHHHHHHhCchhccCCceEEEECcCCCCcCHHHHHHHHHHHHh
Confidence 99998888876642 26789999999999965322 222222 12234568999999999999999999999887
Q ss_pred hhC
Q 030225 155 EVN 157 (181)
Q Consensus 155 ~~~ 157 (181)
++|
T Consensus 169 ~~q 171 (171)
T 1upt_A 169 SRQ 171 (171)
T ss_dssp TCC
T ss_pred hcC
Confidence 654
No 84
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.97 E-value=1.5e-30 Score=180.70 Aligned_cols=145 Identities=17% Similarity=0.201 Sum_probs=113.3
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
||||||||+++|.++.+. .+.+|++... ..+.+++ +.+.+||+||++.++.++..+++++|++++|||+++++++
T Consensus 34 ~~vGKSsLi~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~ 108 (198)
T 1f6b_A 34 DNAGKTTLLHMLKDDRLG-QHVPTLHPTS--EELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERL 108 (198)
T ss_dssp TTSSHHHHHHHHSCC-------CCCCCSC--EEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEEEEEETTCGGGH
T ss_pred CCCCHHHHHHHHhcCCCC-ccCCCCCcee--EEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEEEEEECCCHHHH
Confidence 699999999999988764 4567777654 3445565 6889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh-CCCCceEEEEEeCCCCcccccCCHHHHHHHHHH-----------------cCCeEEEEecCCCCCH
Q 030225 81 ERAKKWVQELQRQ-GNPNLIMFLVANKVDLEEKRKVKNEEGELYAQE-----------------NGLSFLETSAKSAHNV 142 (181)
Q Consensus 81 ~~~~~~~~~~~~~-~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~Sa~~~~gi 142 (181)
..+..|+..+... ...+.|+++++||+|+.+ .+..+++..++.. .+++++++||++|+|+
T Consensus 109 ~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv 186 (198)
T 1f6b_A 109 LESKEELDSLMTDETIANVPILILGNKIDRPE--AISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGY 186 (198)
T ss_dssp HHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT--CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSH
T ss_pred HHHHHHHHHHHhCcccCCCcEEEEEECCCccc--cCCHHHHHHHhCcccccccccccccccccCceEEEEEEECCCCCCH
Confidence 9999999988764 236789999999999965 4566666666542 3467999999999999
Q ss_pred HHHHHHHHHH
Q 030225 143 NELFYEIAKR 152 (181)
Q Consensus 143 ~~~~~~l~~~ 152 (181)
+++|++|.+.
T Consensus 187 ~~l~~~l~~~ 196 (198)
T 1f6b_A 187 GEGFRWMAQY 196 (198)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHh
Confidence 9999999764
No 85
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.97 E-value=2.1e-31 Score=179.33 Aligned_cols=148 Identities=20% Similarity=0.322 Sum_probs=115.7
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|||||||+++|.++.+.. +.||++... ..+.. ..+.+.+||+||++.+..++..+++++|++++|||+++++++
T Consensus 9 ~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 83 (164)
T 1r8s_A 9 DAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERV 83 (164)
T ss_dssp TTSSHHHHHHHHHHHCSSC-CCCCSSCCE--EEEEC--SSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCGGGH
T ss_pred CCCCHHHHHHHHHcCCcCc-ccCcCceeE--EEEEE--CCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEECCCHHHH
Confidence 6999999999999888765 557777432 23333 446889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh-CCCCceEEEEEeCCCCcccccCCHHHHHHH-----HHHcCCeEEEEecCCCCCHHHHHHHHHHHHH
Q 030225 81 ERAKKWVQELQRQ-GNPNLIMFLVANKVDLEEKRKVKNEEGELY-----AQENGLSFLETSAKSAHNVNELFYEIAKRLA 154 (181)
Q Consensus 81 ~~~~~~~~~~~~~-~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~ 154 (181)
..+..|+..+... ...+.|+++++||+|+.+.. ...+.... ++..+++++++||++|.|++++|++|.+.+.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 161 (164)
T 1r8s_A 84 NEAREELMRMLAEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLR 161 (164)
T ss_dssp HHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCC--CHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHHHHHHHHHh
Confidence 9999998888663 23678999999999996532 22222221 1123457999999999999999999998775
Q ss_pred h
Q 030225 155 E 155 (181)
Q Consensus 155 ~ 155 (181)
+
T Consensus 162 ~ 162 (164)
T 1r8s_A 162 N 162 (164)
T ss_dssp -
T ss_pred h
Confidence 4
No 86
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.97 E-value=7e-30 Score=176.22 Aligned_cols=145 Identities=18% Similarity=0.216 Sum_probs=119.8
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
||||||||+++|.++.+.. +.+|++... ..+.+++ +.+.+||+||++.++.++..+++++|++++|||+++++++
T Consensus 32 ~~vGKSsli~~l~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 106 (190)
T 1m2o_B 32 DNAGKTTLLHMLKNDRLAT-LQPTWHPTS--EELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERF 106 (190)
T ss_dssp TTSSHHHHHHHHHHSCCCC-CCCCCSCEE--EEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEEEEEETTCGGGH
T ss_pred CCCCHHHHHHHHhcCCCCc-cccCCCCCe--EEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCChHHH
Confidence 6999999999999988754 567777643 4455565 7889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh-CCCCceEEEEEeCCCCcccccCCHHHHHHHHHH------------cCCeEEEEecCCCCCHHHHHH
Q 030225 81 ERAKKWVQELQRQ-GNPNLIMFLVANKVDLEEKRKVKNEEGELYAQE------------NGLSFLETSAKSAHNVNELFY 147 (181)
Q Consensus 81 ~~~~~~~~~~~~~-~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~------------~~~~~~~~Sa~~~~gi~~~~~ 147 (181)
+.+..|+..+... ...+.|+++++||+|+.+ .+..++..+.+.. .+++++++||++|+|++++|+
T Consensus 107 ~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~ 184 (190)
T 1m2o_B 107 DEARVELDALFNIAELKDVPFVILGNKIDAPN--AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQ 184 (190)
T ss_dssp HHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT--CCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBTTTTBSHHHHHH
T ss_pred HHHHHHHHHHHcchhhcCCCEEEEEECCCCcC--CCCHHHHHHHhCCccccccccccccceEEEEEeECCcCCCHHHHHH
Confidence 9999999888764 236789999999999965 4555665555432 346899999999999999999
Q ss_pred HHHHH
Q 030225 148 EIAKR 152 (181)
Q Consensus 148 ~l~~~ 152 (181)
+|.+.
T Consensus 185 ~l~~~ 189 (190)
T 1m2o_B 185 WLSQY 189 (190)
T ss_dssp HHHTT
T ss_pred HHHhh
Confidence 99753
No 87
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.97 E-value=2.5e-31 Score=183.11 Aligned_cols=150 Identities=22% Similarity=0.311 Sum_probs=120.1
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|||||||+++|.++.+...+.+|++.++.. +. ...+.+.+||+||++.+..++..+++++|++|+|||+++++++
T Consensus 31 ~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~ 106 (188)
T 1zd9_A 31 QYSGKTTFVNVIASGQFNEDMIPTVGFNMRK--IT--KGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKI 106 (188)
T ss_dssp TTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE--EE--ETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEETTCGGGH
T ss_pred CCCCHHHHHHHHHcCCCCCccCCCCceeEEE--EE--eCCEEEEEEECCCCHhHHHHHHHHHccCCEEEEEEECCCHHHH
Confidence 6899999999999999888788888876643 22 3356788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHH-----HHcCCeEEEEecCCCCCHHHHHHHHHHHHH
Q 030225 81 ERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYA-----QENGLSFLETSAKSAHNVNELFYEIAKRLA 154 (181)
Q Consensus 81 ~~~~~~~~~~~~~~-~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~ 154 (181)
+.+..|+..+.... ..+.|+++|+||+|+.+.. ..++..... ...+++++++||++|.|++++|++|.+.+.
T Consensus 107 ~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~ 184 (188)
T 1zd9_A 107 EASKNELHNLLDKPQLQGIPVLVLGNKRDLPGAL--DEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSK 184 (188)
T ss_dssp HHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHhCcccCCCCEEEEEECCCCccCC--CHHHHHHHhChhhhccCCeeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 99999988886642 2678999999999996532 222222211 123467999999999999999999988765
Q ss_pred hh
Q 030225 155 EV 156 (181)
Q Consensus 155 ~~ 156 (181)
++
T Consensus 185 ~~ 186 (188)
T 1zd9_A 185 SR 186 (188)
T ss_dssp --
T ss_pred hh
Confidence 43
No 88
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=3.1e-30 Score=177.43 Aligned_cols=153 Identities=20% Similarity=0.275 Sum_probs=117.3
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|||||||+++|.++.+. .+.+|++.... .+.+++ +.+.+||+||++.+..++..+++++|++++|||+++++++
T Consensus 25 ~~~GKssl~~~l~~~~~~-~~~~t~~~~~~--~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~ 99 (187)
T 1zj6_A 25 DNAGKTTILYQFSMNEVV-HTSPTIGSNVE--EIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERI 99 (187)
T ss_dssp TTSSHHHHHHHHHTTSCE-EEECCSCSSCE--EEEETT--EEEEEEECCC----CGGGHHHHTTCCEEEEEEETTCTTTH
T ss_pred CCCCHHHHHHHHhcCCCC-cCcCCCccceE--EEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHH
Confidence 689999999999988876 56677775543 334444 6888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHHH-----HcCCeEEEEecCCCCCHHHHHHHHHHHHH
Q 030225 81 ERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQ-----ENGLSFLETSAKSAHNVNELFYEIAKRLA 154 (181)
Q Consensus 81 ~~~~~~~~~~~~~~-~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~ 154 (181)
+.+..|+..+.... ..+.|+++++||+|+.+. ...++...... ..+++++++||++|+|++++|++|++.+.
T Consensus 100 ~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 177 (187)
T 1zj6_A 100 SVTREELYKMLAHEDLRKAGLLIFANKQDVKEC--MTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLK 177 (187)
T ss_dssp HHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTC--CCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhchhhCCCeEEEEEECCCCcCC--CCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHHHHHHHHHHHHH
Confidence 99999998887642 267899999999999642 23344443332 34568999999999999999999999887
Q ss_pred hhCCCC
Q 030225 155 EVNPSR 160 (181)
Q Consensus 155 ~~~~~~ 160 (181)
...++.
T Consensus 178 ~~~~~~ 183 (187)
T 1zj6_A 178 IRLEHH 183 (187)
T ss_dssp C-----
T ss_pred HHhhhh
Confidence 665543
No 89
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.97 E-value=1.1e-29 Score=174.47 Aligned_cols=149 Identities=18% Similarity=0.229 Sum_probs=120.9
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|||||||+++|.++. ...+.+|++.... .+..+ .+.+.+||+||++.+...+..+++++|++++|||+++++++
T Consensus 27 ~~~GKssl~~~l~~~~-~~~~~~t~~~~~~--~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~ 101 (186)
T 1ksh_A 27 DNAGKTTILKKFNGED-VDTISPTLGFNIK--TLEHR--GFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRM 101 (186)
T ss_dssp TTSSHHHHHHHHTTCC-CSSCCCCSSEEEE--EEEET--TEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEETTCGGGH
T ss_pred CCCCHHHHHHHHhcCC-CCcccccCccceE--EEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEECcCHHHH
Confidence 6999999999999888 6667788885543 34444 46788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh-CCCCceEEEEEeCCCCcccccCCHHHHHHHHH-----HcCCeEEEEecCCCCCHHHHHHHHHHHHH
Q 030225 81 ERAKKWVQELQRQ-GNPNLIMFLVANKVDLEEKRKVKNEEGELYAQ-----ENGLSFLETSAKSAHNVNELFYEIAKRLA 154 (181)
Q Consensus 81 ~~~~~~~~~~~~~-~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~ 154 (181)
+.+..|+..+... ...+.|+++++||+|+.+... .++...... ..+++++++||+++.|++++|++|.+.+.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 179 (186)
T 1ksh_A 102 QDCQRELQSLLVEERLAGATLLIFANKQDLPGALS--CNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDIS 179 (186)
T ss_dssp HHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCC--HHHHHHHhChhhccCCceEEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 9999998888664 236799999999999965322 233333221 24568999999999999999999999887
Q ss_pred hh
Q 030225 155 EV 156 (181)
Q Consensus 155 ~~ 156 (181)
++
T Consensus 180 ~~ 181 (186)
T 1ksh_A 180 SR 181 (186)
T ss_dssp TC
T ss_pred hc
Confidence 64
No 90
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.97 E-value=8e-29 Score=171.06 Aligned_cols=153 Identities=41% Similarity=0.729 Sum_probs=139.6
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|||||||+++|.+..+...+.++++.++....+.+++..+.+.+||++|.+.+..++..++++++++++|+|.++..++
T Consensus 38 ~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~ 117 (191)
T 1oix_A 38 SGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTY 117 (191)
T ss_dssp TTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEETTCHHHH
T ss_pred CCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEECcCHHHH
Confidence 69999999999999999888889999998888889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHH
Q 030225 81 ERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 153 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~ 153 (181)
+.+..|+..+........|+++++||+|+.+.......++..++...++.++++||+++.|++++|++|.+.+
T Consensus 118 ~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~l~~~l~~~i 190 (191)
T 1oix_A 118 ENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 190 (191)
T ss_dssp HTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 9888898887665556789999999999987777788888999999999999999999999999999998765
No 91
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.97 E-value=1.5e-29 Score=174.44 Aligned_cols=149 Identities=19% Similarity=0.279 Sum_probs=120.6
Q ss_pred CCCchhHHHHHHhhCC-CCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhH
Q 030225 1 MGTGKTSLVLRFVKGQ-FFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDS 79 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s 79 (181)
+|||||||+++|.+.. +...+.+|++.. ...+.+++ +.+.+||+||++.+..++..+++++|++|+|||++++.+
T Consensus 30 ~~~GKSsli~~l~~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s 105 (190)
T 2h57_A 30 DNSGKTTIINKLKPSNAQSQNILPTIGFS--IEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLR 105 (190)
T ss_dssp TTSSHHHHHHHTSCGGGCCSSCCCCSSEE--EEEEECSS--CEEEEEEECCSTTTGGGGGGGGGGCSEEEEEEETTCHHH
T ss_pred CCCCHHHHHHHHhcCCCCCCCcCCcccee--EEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCCHHH
Confidence 6899999999999887 566667777743 34444554 678899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCC---CCceEEEEEeCCCCcccccCCHHHHHHHHH-----HcCCeEEEEecCCCCCHHHHHHHHHH
Q 030225 80 FERAKKWVQELQRQGN---PNLIMFLVANKVDLEEKRKVKNEEGELYAQ-----ENGLSFLETSAKSAHNVNELFYEIAK 151 (181)
Q Consensus 80 ~~~~~~~~~~~~~~~~---~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~~~~~l~~ 151 (181)
+..+..|+..+..... .+.|+++|+||+|+.+ ....++...++. ..+++++++||+++.|++++|++|.+
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 183 (190)
T 2h57_A 106 MVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRD--AVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQD 183 (190)
T ss_dssp HHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTT--CCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhChhhccCCCeEEEEEeCcCccc--CCCHHHHHHHhChhhccCCceEEEEccCCCCcCHHHHHHHHHH
Confidence 9999999988877533 5789999999999965 233455555442 23578999999999999999999998
Q ss_pred HHHh
Q 030225 152 RLAE 155 (181)
Q Consensus 152 ~~~~ 155 (181)
.+.+
T Consensus 184 ~i~~ 187 (190)
T 2h57_A 184 QIQT 187 (190)
T ss_dssp HC--
T ss_pred HHHH
Confidence 7654
No 92
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.97 E-value=6.9e-31 Score=180.35 Aligned_cols=157 Identities=19% Similarity=0.373 Sum_probs=117.0
Q ss_pred CCCchhHHHHHHhhC--CCCCccccceeeeEEEEEEEE---CCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECC
Q 030225 1 MGTGKTSLVLRFVKG--QFFDFQESTIGAAFFTQVLSL---NEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDIT 75 (181)
Q Consensus 1 ~~~GKttLl~~l~~~--~~~~~~~~t~~~~~~~~~~~~---~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~ 75 (181)
||||||||+++|.+. .+...+.+|+|.++....+.. ++..+.+.+||++|++.+..++..++++++++++|||++
T Consensus 11 ~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~ 90 (184)
T 2zej_A 11 TGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRALYLAVYDLS 90 (184)
T ss_dssp TTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSEEEEEEEEGG
T ss_pred CCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCcEEEEEEeCC
Confidence 699999999999985 455667788888776665543 345678999999999999999999999999999999999
Q ss_pred Ch-hHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCC---HHHHHHHHHHcCCe----EEEEecCCCC-CHHHHH
Q 030225 76 SM-DSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVK---NEEGELYAQENGLS----FLETSAKSAH-NVNELF 146 (181)
Q Consensus 76 ~~-~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~---~~~~~~~~~~~~~~----~~~~Sa~~~~-gi~~~~ 146 (181)
++ .+++.+..|+..+.... ++.|+++|+||+|+.+.+.+. ...+..+++.++++ ++++||+++. |+++++
T Consensus 91 ~~~~s~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~l~ 169 (184)
T 2zej_A 91 KGQAEVDAMKPWLFNIKARA-SSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLR 169 (184)
T ss_dssp GCHHHHHTHHHHHHHHHHHC-TTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTTSCCHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHhhC-CCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEecccCchhHHHHH
Confidence 87 57999999999887763 578999999999986544332 23345566566776 9999999996 999999
Q ss_pred HHHHHHHHhhCC
Q 030225 147 YEIAKRLAEVNP 158 (181)
Q Consensus 147 ~~l~~~~~~~~~ 158 (181)
+.|.+.+.+.+.
T Consensus 170 ~~i~~~~~~~~~ 181 (184)
T 2zej_A 170 KTIINESLNFKI 181 (184)
T ss_dssp HHHHHHHHCC--
T ss_pred HHHHHHHhcccc
Confidence 999988776543
No 93
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.97 E-value=4.2e-29 Score=185.75 Aligned_cols=153 Identities=25% Similarity=0.473 Sum_probs=135.3
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|||||||+++|.++.+...+.++++..+ ...+.+++..+.+.+||+||++.+..++..+++++|++++|||++++.++
T Consensus 164 ~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 242 (332)
T 2wkq_A 164 GAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASF 242 (332)
T ss_dssp TTSSHHHHHHHHHHSCCCCSCCCCSEEEE-EEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEEEEETTCHHHH
T ss_pred CCCChHHHHHHHHhCCCCcccCCccccee-EEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEEEEeCCCHHHH
Confidence 68999999999999998888888887655 45567888999999999999999999999999999999999999999999
Q ss_pred HHHH-HHHHHHHHhCCCCceEEEEEeCCCCccc------------ccCCHHHHHHHHHHcCC-eEEEEecCCCCCHHHHH
Q 030225 81 ERAK-KWVQELQRQGNPNLIMFLVANKVDLEEK------------RKVKNEEGELYAQENGL-SFLETSAKSAHNVNELF 146 (181)
Q Consensus 81 ~~~~-~~~~~~~~~~~~~~p~ivi~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~~~ 146 (181)
..+. .|+..+.... .++|+++|+||+|+... +.+..+++..+++..++ +++++||++|.|++++|
T Consensus 243 ~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 321 (332)
T 2wkq_A 243 HHVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 321 (332)
T ss_dssp HHHHHTHHHHHHHHC-TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHH
T ss_pred HHHHHHHHHHHHhhC-CCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEecCCCCcCHHHHH
Confidence 9987 7888887764 48999999999998543 56778888999999997 99999999999999999
Q ss_pred HHHHHHHHh
Q 030225 147 YEIAKRLAE 155 (181)
Q Consensus 147 ~~l~~~~~~ 155 (181)
++|.+.+..
T Consensus 322 ~~l~~~~~~ 330 (332)
T 2wkq_A 322 DEAIRAVLC 330 (332)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhc
Confidence 999988764
No 94
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.97 E-value=1e-30 Score=180.70 Aligned_cols=148 Identities=18% Similarity=0.304 Sum_probs=111.2
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|||||||+++|+++.+.. +.||++.. ...+... .+.+.+||+||++.+..++..+++++|++++|||+++++++
T Consensus 38 ~~vGKSsLi~~l~~~~~~~-~~~t~~~~--~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~ 112 (192)
T 2b6h_A 38 DAAGKTTILYKLKLGEIVT-TIPTIGFN--VETVEYK--NICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERV 112 (192)
T ss_dssp TTSSHHHHHHHHCSSCCEE-EEEETTEE--EEEEEET--TEEEEEEECC-----CTTHHHHHHTCCEEEEEEETTCGGGH
T ss_pred CCCCHHHHHHHHHhCCccc-cCCcCcee--EEEEEEC--CEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHH
Confidence 6999999999999888764 45666633 3333443 46888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh-CCCCceEEEEEeCCCCcccccCCHHHHHHH-----HHHcCCeEEEEecCCCCCHHHHHHHHHHHHH
Q 030225 81 ERAKKWVQELQRQ-GNPNLIMFLVANKVDLEEKRKVKNEEGELY-----AQENGLSFLETSAKSAHNVNELFYEIAKRLA 154 (181)
Q Consensus 81 ~~~~~~~~~~~~~-~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~ 154 (181)
+.+..|+..+... ...+.|+++++||+|+.+.. ..++.... +...+++++++||++|.|++++|++|++.+.
T Consensus 113 ~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~ 190 (192)
T 2b6h_A 113 QESADELQKMLQEDELRDAVLLVFANKQDMPNAM--PVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELS 190 (192)
T ss_dssp HHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcccccCCCeEEEEEECCCCCCCC--CHHHHHHHhCcccccCCceEEEECcCCCcCCHHHHHHHHHHHHh
Confidence 9999999888663 23578999999999996532 22222221 1123457999999999999999999998764
Q ss_pred h
Q 030225 155 E 155 (181)
Q Consensus 155 ~ 155 (181)
+
T Consensus 191 ~ 191 (192)
T 2b6h_A 191 K 191 (192)
T ss_dssp T
T ss_pred c
Confidence 3
No 95
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.97 E-value=9.5e-30 Score=174.16 Aligned_cols=145 Identities=20% Similarity=0.293 Sum_probs=117.2
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|||||||+++|+++.+ ..+.++++.... .+.+++ +.+.+||+||++.+..++..+++++|++++|||+++++++
T Consensus 30 ~~~GKSsli~~l~~~~~-~~~~~t~~~~~~--~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~ 104 (181)
T 2h17_A 30 DNAGKTTILYQFSMNEV-VHTSPTIGSNVE--EIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERI 104 (181)
T ss_dssp TTSSHHHHHHHHHTTSC-EEEECCSSSSCE--EEEETT--EEEEEEEESSSGGGTCGGGGGGTTCCEEEEEEETTCTTTH
T ss_pred CCCCHHHHHHHHhcCCC-CccCCcCceeeE--EEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHH
Confidence 69999999999999887 556677776543 334444 6888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHH-----HHcCCeEEEEecCCCCCHHHHHHHHHHH
Q 030225 81 ERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYA-----QENGLSFLETSAKSAHNVNELFYEIAKR 152 (181)
Q Consensus 81 ~~~~~~~~~~~~~~-~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~~~~~l~~~ 152 (181)
+.+..|+..+.... ..+.|+++++||+|+.+. ...++..... ...+++++++||++|.|++++|++|++.
T Consensus 105 ~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 180 (181)
T 2h17_A 105 SVTREELYKMLAHEDLRKAGLLIFANKQDVKEC--MTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSR 180 (181)
T ss_dssp HHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhChhhCCCeEEEEEECCCcccC--CCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHHHhh
Confidence 99999988887642 367899999999998552 2334443332 2235689999999999999999999763
No 96
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.97 E-value=1.7e-30 Score=178.99 Aligned_cols=150 Identities=24% Similarity=0.354 Sum_probs=118.9
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|||||||+++|.++.+.. +.+|++... ..+..+ .+.+.+||+||++.+...+..+++++|++++|+|+++++++
T Consensus 31 ~~~GKssli~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~ 105 (189)
T 2x77_A 31 DNAGKTSILYRLHLGDVVT-TVPTVGVNL--ETLQYK--NISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRM 105 (189)
T ss_dssp TTSSHHHHHHHTCCSCCEE-ECSSTTCCE--EEEEET--TEEEEEEEECCSSSSCCCCSSSSTTCCEEEEEEETTCCTTH
T ss_pred CCCCHHHHHHHHHcCCCCC-cCCCCceEE--EEEEEC--CEEEEEEECCCCHhHHHHHHHHhhcCCEEEEEEeCCCHHHH
Confidence 6999999999999887754 557777443 334444 46788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHH-----HHHcCCeEEEEecCCCCCHHHHHHHHHHHHH
Q 030225 81 ERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELY-----AQENGLSFLETSAKSAHNVNELFYEIAKRLA 154 (181)
Q Consensus 81 ~~~~~~~~~~~~~~-~~~~p~ivi~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~ 154 (181)
..+..|+..+.... ..+.|+++++||+|+.+... .++.... +...+++++++||+++.|++++|++|.+.+.
T Consensus 106 ~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 183 (189)
T 2x77_A 106 GVAKHELYALLDEDELRKSLLLIFANKQDLPDAAS--EAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLVERLR 183 (189)
T ss_dssp HHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCC--HHHHHHHhChhhccCCceEEEEccCCCccCHHHHHHHHHHHHH
Confidence 99998888876642 36789999999999965322 2222221 1223568999999999999999999999987
Q ss_pred hhC
Q 030225 155 EVN 157 (181)
Q Consensus 155 ~~~ 157 (181)
+++
T Consensus 184 ~~~ 186 (189)
T 2x77_A 184 EQG 186 (189)
T ss_dssp HTC
T ss_pred hcc
Confidence 654
No 97
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.97 E-value=2.7e-30 Score=176.98 Aligned_cols=149 Identities=19% Similarity=0.246 Sum_probs=115.5
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
||||||||+++|.+..+. .+.+|+|... ..+..+ .+.+.+||+||++.+...+..+++++|++++|||+++++++
T Consensus 25 ~~vGKSsL~~~l~~~~~~-~~~~t~g~~~--~~~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~ 99 (181)
T 1fzq_A 25 DNAGKTTLLKQLASEDIS-HITPTQGFNI--KSVQSQ--GFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRF 99 (181)
T ss_dssp TTSSHHHHHHHHCCSCCE-EEEEETTEEE--EEEEET--TEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEETTCGGGH
T ss_pred CCCCHHHHHHHHhcCCCC-cccCcCCeEE--EEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECcCHHHH
Confidence 699999999999987653 4567777543 334444 46788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh-CCCCceEEEEEeCCCCcccccCCHHHHHHHH-----HHcCCeEEEEecCCCCCHHHHHHHHHHHHH
Q 030225 81 ERAKKWVQELQRQ-GNPNLIMFLVANKVDLEEKRKVKNEEGELYA-----QENGLSFLETSAKSAHNVNELFYEIAKRLA 154 (181)
Q Consensus 81 ~~~~~~~~~~~~~-~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~ 154 (181)
+.+..|+..+... ...+.|+++++||+|+.+... .++..... ...+++++++||++|+|++++|++|++.+.
T Consensus 100 ~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 177 (181)
T 1fzq_A 100 EETGQELTELLEEEKLSCVPVLIFANKQDLLTAAP--ASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVN 177 (181)
T ss_dssp HHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCC--HHHHHHHhCchhccCCceEEEEccCCCCCCHHHHHHHHHHHHH
Confidence 9999998877553 236789999999999965432 22322221 123467999999999999999999998765
Q ss_pred hh
Q 030225 155 EV 156 (181)
Q Consensus 155 ~~ 156 (181)
++
T Consensus 178 ~~ 179 (181)
T 1fzq_A 178 AK 179 (181)
T ss_dssp --
T ss_pred hc
Confidence 43
No 98
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.96 E-value=2.4e-29 Score=172.17 Aligned_cols=150 Identities=24% Similarity=0.344 Sum_probs=116.6
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|||||||+++|.++.+ ..+.++++... ..+.+++ +.+.+||+||++.+...+..+++++|++++|+|+++++++
T Consensus 27 ~~~GKssli~~l~~~~~-~~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~ 101 (183)
T 1moz_A 27 DGAGKTTILYRLQIGEV-VTTKPTIGFNV--ETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRM 101 (183)
T ss_dssp TTSSHHHHHHHTCCSEE-EEECSSTTCCE--EEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEEEEEETTCTTTH
T ss_pred CCCCHHHHHHHHhcCCc-CccCCcCccce--EEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHH
Confidence 69999999999998877 55667777543 3344444 6788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHHH-----HcCCeEEEEecCCCCCHHHHHHHHHHHHH
Q 030225 81 ERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQ-----ENGLSFLETSAKSAHNVNELFYEIAKRLA 154 (181)
Q Consensus 81 ~~~~~~~~~~~~~~-~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~ 154 (181)
+.+..|+..+.... ..+.|+++++||+|+.+. ...++...... ..+++++++||++++|++++|++|.+.+.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 179 (183)
T 1moz_A 102 STASKELHLMLQEEELQDAALLVFANKQDQPGA--LSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIK 179 (183)
T ss_dssp HHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC--CCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcChhhCCCeEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHHHHHHH
Confidence 99999988886643 368899999999998653 23334333322 12357999999999999999999999887
Q ss_pred hhC
Q 030225 155 EVN 157 (181)
Q Consensus 155 ~~~ 157 (181)
+++
T Consensus 180 ~~q 182 (183)
T 1moz_A 180 EEQ 182 (183)
T ss_dssp HHH
T ss_pred hcc
Confidence 653
No 99
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.93 E-value=1e-31 Score=187.24 Aligned_cols=151 Identities=27% Similarity=0.511 Sum_probs=128.1
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|||||||+++|+++.+...+.++++..+ ...+.+++..+.+.+||+||++.+..++..+++++|++++|||++++.++
T Consensus 39 ~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~ 117 (204)
T 3th5_A 39 GAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASF 117 (204)
Confidence 68999999999999888877777776554 34456677788899999999999999999999999999999999999999
Q ss_pred HHHH-HHHHHHHHhCCCCceEEEEEeCCCCcccc------------cCCHHHHHHHHHHcCC-eEEEEecCCCCCHHHHH
Q 030225 81 ERAK-KWVQELQRQGNPNLIMFLVANKVDLEEKR------------KVKNEEGELYAQENGL-SFLETSAKSAHNVNELF 146 (181)
Q Consensus 81 ~~~~-~~~~~~~~~~~~~~p~ivi~nK~D~~~~~------------~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~~~ 146 (181)
+.+. .|+..+.... ++.|+++++||+|+.+.. .+..+++..+++..++ +++++||++|.|++++|
T Consensus 118 ~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~l~ 196 (204)
T 3th5_A 118 ENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 196 (204)
Confidence 9986 7887776653 478999999999996532 4555667778888887 89999999999999999
Q ss_pred HHHHHHH
Q 030225 147 YEIAKRL 153 (181)
Q Consensus 147 ~~l~~~~ 153 (181)
++|++.+
T Consensus 197 ~~l~~~i 203 (204)
T 3th5_A 197 DEAIRAV 203 (204)
Confidence 9998765
No 100
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.96 E-value=9.1e-29 Score=171.37 Aligned_cols=148 Identities=23% Similarity=0.314 Sum_probs=114.5
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEE--EEEEEEC-CeEEEEEEEeCCChhhhhccc---hhhccCCcEEEEEEEC
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFF--TQVLSLN-EVTIKFDIWDTAGQERYHSLA---PMYYRGAAAAVVVYDI 74 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~--~~~~~~~-~~~~~~~i~D~~G~~~~~~~~---~~~~~~~d~~i~v~d~ 74 (181)
+|||||||++++.+. +... ++++.++. .....+. +..+.+.+||++|++.|.... ..+++++|++|+|||+
T Consensus 29 ~~vGKTsLi~~l~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~i~v~d~ 105 (196)
T 3llu_A 29 RRSGKSSIQKVVFHK-MSPN--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDA 105 (196)
T ss_dssp TTSSHHHHHHHHHSC-CCGG--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHHHTCSEEEEEEET
T ss_pred CCCCHHHHHHHHHhc-CCCc--ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccccccCCEEEEEEEC
Confidence 689999999987764 3332 34443332 2333333 566789999999999987776 8999999999999999
Q ss_pred CCh--hHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcc-------cccCCHHHHHHHHH----HcCCeEEEEecCCCCC
Q 030225 75 TSM--DSFERAKKWVQELQRQGNPNLIMFLVANKVDLEE-------KRKVKNEEGELYAQ----ENGLSFLETSAKSAHN 141 (181)
Q Consensus 75 ~~~--~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~-------~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~g 141 (181)
+++ +++..+..|+..+... .++.|+++|+||+|+.. .+.+...++..+++ .++++++++||++ .|
T Consensus 106 ~~~~~~~~~~~~~~l~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~e~Sa~~-~~ 183 (196)
T 3llu_A 106 QDDYMEALTRLHITVSKAYKV-NPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYD-HS 183 (196)
T ss_dssp TSCCHHHHHHHHHHHHHHHHH-CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSCEEEEEECTTS-TH
T ss_pred CCchHHHHHHHHHHHHHHHhc-CCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCCcceEEEEech-hh
Confidence 997 6777777888777544 36899999999999743 34555566677777 6788999999999 99
Q ss_pred HHHHHHHHHHHH
Q 030225 142 VNELFYEIAKRL 153 (181)
Q Consensus 142 i~~~~~~l~~~~ 153 (181)
++++|+.|++.+
T Consensus 184 v~~~f~~l~~~l 195 (196)
T 3llu_A 184 IFEAFSKVVQKL 195 (196)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 999999998764
No 101
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.95 E-value=7.6e-28 Score=162.43 Aligned_cols=144 Identities=17% Similarity=0.158 Sum_probs=107.5
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhh------ccchhhcc--CCcEEEEEE
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYH------SLAPMYYR--GAAAAVVVY 72 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~------~~~~~~~~--~~d~~i~v~ 72 (181)
||||||||+++|.+..+.....++++.+.....+..++ ..+.+||+||+..+. .+...++. ++|++++|+
T Consensus 12 ~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~ 89 (165)
T 2wji_A 12 PNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIV 89 (165)
T ss_dssp TTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHHHCCSEEEEEE
T ss_pred CCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhcCCCCEEEEEe
Confidence 69999999999998776555555555555555555555 478899999987664 23355654 899999999
Q ss_pred ECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHH
Q 030225 73 DITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKR 152 (181)
Q Consensus 73 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~ 152 (181)
|+++.+. ...|+..+.. .+.|+++++||+|+...+.+.. ++..+++.++++++++||++|+|++++|++|.+.
T Consensus 90 D~~~~~~---~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~SA~~~~~v~~l~~~l~~~ 162 (165)
T 2wji_A 90 DATALER---NLYLTLQLME---MGANLLLALNKMDLAKSLGIEI-DVDKLEKILGVKVVPLSAAKKMGIEELKKAISIA 162 (165)
T ss_dssp ETTCHHH---HHHHHHHHHH---TTCCEEEEEECHHHHHHTTCCC-CHHHHHHHHTSCEEECBGGGTBSHHHHHHHHHHH
T ss_pred cCCchhH---hHHHHHHHHh---cCCCEEEEEEchHhccccChhh-HHHHHHHHhCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 9998654 3457666654 3689999999999865544443 3567788889999999999999999999999876
Q ss_pred H
Q 030225 153 L 153 (181)
Q Consensus 153 ~ 153 (181)
+
T Consensus 163 ~ 163 (165)
T 2wji_A 163 V 163 (165)
T ss_dssp T
T ss_pred h
Confidence 5
No 102
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.95 E-value=2.7e-29 Score=180.72 Aligned_cols=151 Identities=25% Similarity=0.321 Sum_probs=112.9
Q ss_pred CCchhHHHHHHhh---CCCCCccccce-eeeEEEEE--------------EEECCeEEEEEEEe----------------
Q 030225 2 GTGKTSLVLRFVK---GQFFDFQESTI-GAAFFTQV--------------LSLNEVTIKFDIWD---------------- 47 (181)
Q Consensus 2 ~~GKttLl~~l~~---~~~~~~~~~t~-~~~~~~~~--------------~~~~~~~~~~~i~D---------------- 47 (181)
|||||||+++|.+ ..+...+.+++ +.++.... ..+++..+.+.|||
T Consensus 38 ~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~i~D~~~~~D~~~~~~~~~~ 117 (255)
T 3c5h_A 38 GIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVECKMHIVEQTEFIDDQTFQPHRST 117 (255)
T ss_dssp CCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------CEEEEEECCCEETTTCSBTTGG
T ss_pred CcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEEEEEEEEcccccccccccccccc
Confidence 9999999999998 55666666665 33322211 12456778899999
Q ss_pred -------CCChhhhhccchhhcc---------------------CCcEEEEEEECCCh--hHHHHHHHHHHHHHHh-CCC
Q 030225 48 -------TAGQERYHSLAPMYYR---------------------GAAAAVVVYDITSM--DSFERAKKWVQELQRQ-GNP 96 (181)
Q Consensus 48 -------~~G~~~~~~~~~~~~~---------------------~~d~~i~v~d~~~~--~s~~~~~~~~~~~~~~-~~~ 96 (181)
++|++.|..++..++. ++|++|+|||++++ .+++.+..|+..+... ...
T Consensus 118 ~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~ 197 (255)
T 3c5h_A 118 ALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKT 197 (255)
T ss_dssp GCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHT
T ss_pred ccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccC
Confidence 6666677777777777 79999999999998 9999999999988765 336
Q ss_pred CceEEEEEeCCCCcccccCCHHHHHHHHHH-cCCeEEEEecCCCCCHHHHHHHHHHHHH
Q 030225 97 NLIMFLVANKVDLEEKRKVKNEEGELYAQE-NGLSFLETSAKSAHNVNELFYEIAKRLA 154 (181)
Q Consensus 97 ~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~gi~~~~~~l~~~~~ 154 (181)
+.|+++|+||+|+.+.+.+ +++..++.. .+++++++||+++.|++++|++|++.+.
T Consensus 198 ~~piilV~NK~Dl~~~~~v--~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l~~~l~ 254 (255)
T 3c5h_A 198 KKPIVVVLTKCDEGVERYI--RDAHTFALSKKNLQVVETSARSNVNVDLAFSTLVQLID 254 (255)
T ss_dssp TCCEEEEEECGGGBCHHHH--HHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred CCCEEEEEEcccccccHHH--HHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 7899999999999654443 466677766 4789999999999999999999998764
No 103
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.95 E-value=3.3e-28 Score=170.62 Aligned_cols=149 Identities=23% Similarity=0.283 Sum_probs=106.5
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCe-EEEEEEEeCCChhhhhc-cchhhccCCcEEEEEEECCChh
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEV-TIKFDIWDTAGQERYHS-LAPMYYRGAAAAVVVYDITSMD 78 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~~~i~D~~G~~~~~~-~~~~~~~~~d~~i~v~d~~~~~ 78 (181)
+|||||||+++|+++.+...+. +++.++.. +.+++. .+.+.+||+||+..+.. ++..+++++|++|+|||+++..
T Consensus 16 ~~~GKTsli~~l~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i~v~d~~~~~ 92 (214)
T 2fh5_B 16 CDSGKTLLFVRLLTGQYRDTQT-SITDSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQ 92 (214)
T ss_dssp TTSSHHHHHHHHHHSCCCCBCC-CCSCEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEETTTHH
T ss_pred CCCCHHHHHHHHhCCCcccccC-CcceeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEEEEEEECCCcC
Confidence 6999999999999998877764 44444433 555543 57899999999999887 7888999999999999999854
Q ss_pred -HHHHHHHHHHHHHHh---CCCCceEEEEEeCCCCcccccCCH--HHHHHHHH---------------------------
Q 030225 79 -SFERAKKWVQELQRQ---GNPNLIMFLVANKVDLEEKRKVKN--EEGELYAQ--------------------------- 125 (181)
Q Consensus 79 -s~~~~~~~~~~~~~~---~~~~~p~ivi~nK~D~~~~~~~~~--~~~~~~~~--------------------------- 125 (181)
++.....|+..+... ...+.|+++++||+|+........ +.......
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 172 (214)
T 2fh5_B 93 REVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKG 172 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC------------CCCSSCTT
T ss_pred HHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCCccccccccCCC
Confidence 466655544444322 235789999999999965432110 11111111
Q ss_pred ------Hc--CCeEEEEecCCC------CCHHHHHHHHHHH
Q 030225 126 ------EN--GLSFLETSAKSA------HNVNELFYEIAKR 152 (181)
Q Consensus 126 ------~~--~~~~~~~Sa~~~------~gi~~~~~~l~~~ 152 (181)
.. +++|+++||++| .||+++|++|.+.
T Consensus 173 ~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 173 KEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp SCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred CCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence 11 567999999999 9999999999875
No 104
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.95 E-value=1.9e-28 Score=182.12 Aligned_cols=149 Identities=19% Similarity=0.303 Sum_probs=111.6
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|||||||+++|.+..+.... +|++..+. .+.. ..+.+.||||||++.+..++..+++++|++|+|||++++.++
T Consensus 174 ~~vGKSsLl~~l~~~~~~~~~-pT~~~~~~--~~~~--~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D~~~~~s~ 248 (329)
T 3o47_A 174 DAAGKTTILYKLKLGEIVTTI-PTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERV 248 (329)
T ss_dssp TTSSHHHHHHHTCSSCCEEEE-EETTEEEE--EEEE--TTEEEEEEECC-----CCSHHHHHTTEEEEEEEEETTCSSSH
T ss_pred CCccHHHHHHHHhCCCCCCcc-cccceEEE--EEec--CcEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCchHHH
Confidence 699999999999988876543 66664443 2333 446789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHH-----HHcCCeEEEEecCCCCCHHHHHHHHHHHHH
Q 030225 81 ERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYA-----QENGLSFLETSAKSAHNVNELFYEIAKRLA 154 (181)
Q Consensus 81 ~~~~~~~~~~~~~~-~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~ 154 (181)
..+..|+..+.... ..++|+++|+||+|+.+... .++..... ...+++++++||++|.||+++|++|++.+.
T Consensus 249 ~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~el~~~l~~~l~ 326 (329)
T 3o47_A 249 NEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLR 326 (329)
T ss_dssp HHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhhccCCCeEEEEEECccCCcccC--HHHHHHHhchhhhhcCCCEEEEEECCCCcCHHHHHHHHHHHHH
Confidence 99988887776532 36899999999999865332 22222221 112457999999999999999999999876
Q ss_pred hh
Q 030225 155 EV 156 (181)
Q Consensus 155 ~~ 156 (181)
++
T Consensus 327 ~~ 328 (329)
T 3o47_A 327 NQ 328 (329)
T ss_dssp C-
T ss_pred hc
Confidence 54
No 105
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.95 E-value=3.9e-28 Score=189.64 Aligned_cols=152 Identities=22% Similarity=0.335 Sum_probs=117.8
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
||||||||+++|.++.+.. +.+|++..+.. ++...+.+.+|||+|++.+..++..+++++|++|+|||+++++++
T Consensus 331 ~nvGKSsLl~~l~~~~~~~-~~~T~~~~~~~----~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~V~D~~~~~s~ 405 (497)
T 3lvq_E 331 DAAGKTTILYKLKLGQSVT-TIPTVGFNVET----VTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRI 405 (497)
T ss_dssp TTSSHHHHHHHHHHSSCCC-CCCCSSEEEEE----EESSSCEEEEEEECCCGGGSGGGGGGGTTCCEEEEEEETTCGGGH
T ss_pred CCCCHHHHHHHHhcCCCCC-cCCccceeEEE----EEeCCEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcchhHH
Confidence 7999999999999988654 45777755443 333456889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHH-----HHcCCeEEEEecCCCCCHHHHHHHHHHHHH
Q 030225 81 ERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYA-----QENGLSFLETSAKSAHNVNELFYEIAKRLA 154 (181)
Q Consensus 81 ~~~~~~~~~~~~~~-~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~ 154 (181)
..+..|+..+.... ..++|+++|+||+|+.+.. ...+..... ...+++++++||++|+||+++|++|.+.+.
T Consensus 406 ~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~~~ 483 (497)
T 3lvq_E 406 DEARQELHRIINDREMRDAIILIFANKQDLPDAM--KPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYK 483 (497)
T ss_dssp HHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCC--CHHHHHHHTTCTTCCSSCEEEEECBTTTTBTHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCC--CHHHHHHHhchhhhhcCCeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 99999988886642 2689999999999986532 222222221 112346999999999999999999999876
Q ss_pred hhCCC
Q 030225 155 EVNPS 159 (181)
Q Consensus 155 ~~~~~ 159 (181)
+..++
T Consensus 484 ~~~~~ 488 (497)
T 3lvq_E 484 SKLAA 488 (497)
T ss_dssp -----
T ss_pred hcCCC
Confidence 66554
No 106
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.95 E-value=4.9e-27 Score=159.88 Aligned_cols=147 Identities=17% Similarity=0.171 Sum_probs=112.6
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCCh---
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSM--- 77 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~--- 77 (181)
+|||||||+++|.+..+...+.++++.++....+..++. .+.+||+||++.+..++..++..+|++++|+|++++
T Consensus 17 ~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~ 94 (178)
T 2lkc_A 17 VDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDK--KITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDGVMP 94 (178)
T ss_dssp TTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTE--EEEESCCCSSSSSSCSCCSSCCCCCEEEEEEETTCCCCH
T ss_pred CCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCc--eEEEEECCCCHHHHHHHHHHHhhCCEEEEEEECCCCCcH
Confidence 699999999999999888777777766666666667765 467999999999999999999999999999999883
Q ss_pred hHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcC---------CeEEEEecCCCCCHHHHHHH
Q 030225 78 DSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENG---------LSFLETSAKSAHNVNELFYE 148 (181)
Q Consensus 78 ~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~---------~~~~~~Sa~~~~gi~~~~~~ 148 (181)
.+++.+ ..+ ...+.|+++++||+|+.+. ..++........+ ++++++||++|.|++++|++
T Consensus 95 ~~~~~l----~~~---~~~~~p~ilv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~ 164 (178)
T 2lkc_A 95 QTVEAI----NHA---KAANVPIIVAINKMDKPEA---NPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEGLDHLLEM 164 (178)
T ss_dssp HHHHHH----HHH---GGGSCCEEEEEETTTSSCS---CHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHHHHHHHHH
T ss_pred HHHHHH----HHH---HhCCCCEEEEEECccCCcC---CHHHHHHHHHhcCcChhHcCCcccEEEEecCCCCCHHHHHHH
Confidence 333322 222 2247899999999998652 2233333332222 47999999999999999999
Q ss_pred HHHHHHhhCCC
Q 030225 149 IAKRLAEVNPS 159 (181)
Q Consensus 149 l~~~~~~~~~~ 159 (181)
|++.+...+.+
T Consensus 165 l~~~~~~~~~~ 175 (178)
T 2lkc_A 165 ILLVSEMEELK 175 (178)
T ss_dssp HHHHHHHTTTT
T ss_pred HHHhhhhhccc
Confidence 99988776543
No 107
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.94 E-value=2.7e-26 Score=162.50 Aligned_cols=154 Identities=13% Similarity=0.077 Sum_probs=108.0
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChh------h----hhccchhhccCCcEEEE
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE------R----YHSLAPMYYRGAAAAVV 70 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~------~----~~~~~~~~~~~~d~~i~ 70 (181)
+|||||||+++|++..+.....+..+.+.........+ ..+.+||+||.. . +.. +..++..+|++|+
T Consensus 38 ~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~ 114 (228)
T 2qu8_A 38 PNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL--NKYQIIDTPGLLDRAFENRNTIEMTT-ITALAHINGVILF 114 (228)
T ss_dssp TTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT--EEEEEEECTTTTTSCGGGCCHHHHHH-HHHHHTSSEEEEE
T ss_pred CCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC--CeEEEEECCCCcCcccchhhhHHHHH-HHHhhccccEEEE
Confidence 69999999999999877533222222233333333333 578899999983 2 222 2345788999999
Q ss_pred EEECCChhHHH--HHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHH---HHHHHHHHcC--CeEEEEecCCCCCHH
Q 030225 71 VYDITSMDSFE--RAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNE---EGELYAQENG--LSFLETSAKSAHNVN 143 (181)
Q Consensus 71 v~d~~~~~s~~--~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~---~~~~~~~~~~--~~~~~~Sa~~~~gi~ 143 (181)
|||++++.++. ....|+..+... ..+.|+++|+||+|+.+.+++... ....++...+ ++++++||++|+|++
T Consensus 115 v~d~~~~~s~~~~~~~~~~~~l~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~ 193 (228)
T 2qu8_A 115 IIDISEQCGLTIKEQINLFYSIKSV-FSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSSFSTLTGVGVE 193 (228)
T ss_dssp EEETTCTTSSCHHHHHHHHHHHHTC-C-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEEECCTTTCTTHH
T ss_pred EEecccccCcchHHHHHHHHHHHHh-hcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEEEEecccCCCHH
Confidence 99999987764 234566655443 247899999999999776666554 4556666676 899999999999999
Q ss_pred HHHHHHHHHHHhhCC
Q 030225 144 ELFYEIAKRLAEVNP 158 (181)
Q Consensus 144 ~~~~~l~~~~~~~~~ 158 (181)
++|++|++.+.+.+.
T Consensus 194 ~l~~~l~~~i~~~~~ 208 (228)
T 2qu8_A 194 QAKITACELLKNDQA 208 (228)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999877643
No 108
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.94 E-value=4.5e-28 Score=177.73 Aligned_cols=149 Identities=21% Similarity=0.250 Sum_probs=112.9
Q ss_pred CCCchhHHHHHHhhCCCCC---ccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhc---cchhhccCCcEEEEEEEC
Q 030225 1 MGTGKTSLVLRFVKGQFFD---FQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHS---LAPMYYRGAAAAVVVYDI 74 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~---~~~~~~~~~d~~i~v~d~ 74 (181)
+|||||||++++.++-... .+.+|+|.++.. ++ ..+++++|||+|+++|+. .+..|+++++++|+|||+
T Consensus 8 sgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~----v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~IlV~Di 82 (331)
T 3r7w_B 8 RRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH----FS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGALVYVIDS 82 (331)
T ss_dssp TTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE----EC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEEEEECCC
T ss_pred CCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE----Ec-cEEEEEEEECCCchhccchhhhhhhhccCCCEEEEEEEC
Confidence 5899999999887654332 356788876643 22 347899999999999864 368899999999999999
Q ss_pred CCh--hHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccc-------ccCCHHHHHHHHHH----cCCeEEEEecCCCCC
Q 030225 75 TSM--DSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEK-------RKVKNEEGELYAQE----NGLSFLETSAKSAHN 141 (181)
Q Consensus 75 ~~~--~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~-------~~~~~~~~~~~~~~----~~~~~~~~Sa~~~~g 141 (181)
+++ +.+..+..|+..+... .++.|+++++||+|+... +++..+++.++++. ++++++++||++ .+
T Consensus 83 td~~~~~~~~l~~~l~~~~~~-~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eTSAkd-~n 160 (331)
T 3r7w_B 83 QDEYINAITNLAMIIEYAYKV-NPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIFD-HS 160 (331)
T ss_dssp SSCTTHHHHHHHHHHHHHHHH-CTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECCCSSS-SH
T ss_pred CchHHHHHHHHHHHHHHHhhc-CCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEeccCC-Cc
Confidence 987 3333344445555444 368999999999999653 35666667777775 678999999998 58
Q ss_pred HHHHHHHHHHHHHhh
Q 030225 142 VNELFYEIAKRLAEV 156 (181)
Q Consensus 142 i~~~~~~l~~~~~~~ 156 (181)
|.++|..+++.+..+
T Consensus 161 V~eAFs~iv~~li~~ 175 (331)
T 3r7w_B 161 IYEAFSRIVQKLIPE 175 (331)
T ss_dssp HHHHHHHHHTTSSTT
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999998876654
No 109
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.94 E-value=1.2e-26 Score=171.02 Aligned_cols=150 Identities=19% Similarity=0.295 Sum_probs=118.1
Q ss_pred CCCchhHHHHHHhhCCC--C-CccccceeeeEEEEEEEECCeEEEEEEEeCCChhhh-----hccchhhccCCcEEEEEE
Q 030225 1 MGTGKTSLVLRFVKGQF--F-DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERY-----HSLAPMYYRGAAAAVVVY 72 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~--~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-----~~~~~~~~~~~d~~i~v~ 72 (181)
||||||||+++|+++.. . ..+.+|++..+.. ..+++ .+.+.+||+||++.+ ...+..+++++|++|+||
T Consensus 12 ~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~--~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ad~vi~V~ 88 (307)
T 3r7w_A 12 SGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSH--LRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVF 88 (307)
T ss_dssp TTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEE--EEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHHTTCSEEEEEE
T ss_pred CCCCHHHHHHHHHhCCCCccccCcCCccceEEEE--EEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHhccCCEEEEEE
Confidence 79999999999998732 2 2445666655543 33444 578999999999988 778889999999999999
Q ss_pred ECCChhHHHHHHHHHHHHHHh--CCCCceEEEEEeCCCCcc--ccc----CCHHHHHHHHHHcC---CeEEEEecCCCCC
Q 030225 73 DITSMDSFERAKKWVQELQRQ--GNPNLIMFLVANKVDLEE--KRK----VKNEEGELYAQENG---LSFLETSAKSAHN 141 (181)
Q Consensus 73 d~~~~~s~~~~~~~~~~~~~~--~~~~~p~ivi~nK~D~~~--~~~----~~~~~~~~~~~~~~---~~~~~~Sa~~~~g 141 (181)
|++++++++.+..|...+... ..+++|+++++||+|+.+ .+. +..+++..+++.+| ++++++||++ .|
T Consensus 89 D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~~~tSa~~-~~ 167 (307)
T 3r7w_A 89 DVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWD-ES 167 (307)
T ss_dssp ETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEEEECCTTS-SH
T ss_pred ECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEEEEeeecC-Ch
Confidence 999999999987775554332 136899999999999865 343 55577888888887 7899999999 89
Q ss_pred HHHHHHHHHHHHH
Q 030225 142 VNELFYEIAKRLA 154 (181)
Q Consensus 142 i~~~~~~l~~~~~ 154 (181)
+.++|..+++.+.
T Consensus 168 i~e~~~~iv~~li 180 (307)
T 3r7w_A 168 LYKAWSQIVCSLI 180 (307)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHc
Confidence 9999998877543
No 110
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.94 E-value=4.5e-27 Score=161.66 Aligned_cols=149 Identities=19% Similarity=0.224 Sum_probs=111.9
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCC-----------hhhhhccchhhccC-CcEE
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAG-----------QERYHSLAPMYYRG-AAAA 68 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G-----------~~~~~~~~~~~~~~-~d~~ 68 (181)
+|||||||+++|.+..+...+.++++... ..+... .+.+||+|| ++.+..++..++++ ++++
T Consensus 10 ~~~GKSsli~~l~~~~~~~~~~~~~t~~~--~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (190)
T 2cxx_A 10 SNVGKSTLIYRLTGKKVRRGKRPGVTRKI--IEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNI 83 (190)
T ss_dssp TTSSHHHHHHHHHSCCCSSSSSTTCTTSC--EEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGC
T ss_pred CCCCHHHHHHHHhCcCCccCCCCCcccee--EEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHHHHhhhccC
Confidence 69999999999999988776666554333 333333 578999999 67777777878877 7777
Q ss_pred EEEEECCChhHHHHH-HHHHHH--------H-HHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCe-------E
Q 030225 69 VVVYDITSMDSFERA-KKWVQE--------L-QRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLS-------F 131 (181)
Q Consensus 69 i~v~d~~~~~s~~~~-~~~~~~--------~-~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~-------~ 131 (181)
++|+++.|..++..+ ..|... + ......+.|+++++||+|+.... .++...+++.++++ +
T Consensus 84 ~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~ 160 (190)
T 2cxx_A 84 DVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV---QEVINFLAEKFEVPLSEIDKVF 160 (190)
T ss_dssp CEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH---HHHHHHHHHHHTCCGGGHHHHE
T ss_pred CEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH---HHHHHHHHHHhhhhhhccCCcE
Confidence 777777777777775 556542 1 11222578999999999986544 55677788888864 7
Q ss_pred EEEecCCCCCHHHHHHHHHHHHHhhCC
Q 030225 132 LETSAKSAHNVNELFYEIAKRLAEVNP 158 (181)
Q Consensus 132 ~~~Sa~~~~gi~~~~~~l~~~~~~~~~ 158 (181)
+++||++|+|++++|++|.+.+.+.+.
T Consensus 161 ~~~Sa~~~~~v~~l~~~l~~~~~~~~~ 187 (190)
T 2cxx_A 161 IPISAKFGDNIERLKNRIFEVIRERQG 187 (190)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHHHC--
T ss_pred EEEecCCCCCHHHHHHHHHHhcchhhc
Confidence 999999999999999999999877654
No 111
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.94 E-value=9.3e-27 Score=160.82 Aligned_cols=147 Identities=16% Similarity=0.199 Sum_probs=100.2
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCC----------hhhhhccchhhccCC---cE
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAG----------QERYHSLAPMYYRGA---AA 67 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~~~~~~~~~~~~---d~ 67 (181)
+|||||||+++|++..+...+.++.+.++.......++ ++.+||+|| ++.+..++..+++.+ |+
T Consensus 32 ~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (195)
T 1svi_A 32 SNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKA 108 (195)
T ss_dssp TTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEE
T ss_pred CCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHHHHHHHhhhhcCCE
Confidence 69999999999999887666667777666655555554 578999999 777777788887777 99
Q ss_pred EEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCH--HHHHH-HHHHcCCeEEEEecCCCCCHHH
Q 030225 68 AVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKN--EEGEL-YAQENGLSFLETSAKSAHNVNE 144 (181)
Q Consensus 68 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~--~~~~~-~~~~~~~~~~~~Sa~~~~gi~~ 144 (181)
+++|+|++++.++.... ++..+.. .+.|+++++||+|+.+..++.. ++..+ +....+++++++||+++.|+++
T Consensus 109 ~i~v~d~~~~~~~~~~~-~~~~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~ 184 (195)
T 1svi_A 109 VVQIVDLRHAPSNDDVQ-MYEFLKY---YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILFSSETKKGKDE 184 (195)
T ss_dssp EEEEEETTSCCCHHHHH-HHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEEECCTTTCTTHHH
T ss_pred EEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCceEEEEccCCCCHHH
Confidence 99999999876665532 2222222 4689999999999976444322 22222 2222357999999999999999
Q ss_pred HHHHHHHHHH
Q 030225 145 LFYEIAKRLA 154 (181)
Q Consensus 145 ~~~~l~~~~~ 154 (181)
+|++|.+.+.
T Consensus 185 l~~~l~~~l~ 194 (195)
T 1svi_A 185 AWGAIKKMIN 194 (195)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhc
Confidence 9999988764
No 112
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.94 E-value=1.3e-26 Score=159.27 Aligned_cols=149 Identities=17% Similarity=0.167 Sum_probs=114.8
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhh------ccchhhcc--CCcEEEEEE
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYH------SLAPMYYR--GAAAAVVVY 72 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~------~~~~~~~~--~~d~~i~v~ 72 (181)
+|||||||+++|.+..+.....++++.+.....+..++ ..+.+||+||+..+. .++..++. .+|++++|+
T Consensus 16 ~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~ 93 (188)
T 2wjg_A 16 PNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIV 93 (188)
T ss_dssp TTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHHHHHCCSEEEEEE
T ss_pred CCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHHHhccCCCEEEEEe
Confidence 69999999999998776555556666666555666655 578899999987664 34555654 599999999
Q ss_pred ECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHH
Q 030225 73 DITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKR 152 (181)
Q Consensus 73 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~ 152 (181)
|.++ ++....|+..+.. .+.|+++++||+|+.....+. .+...+++.++++++++||+++.|++++|++|++.
T Consensus 94 d~~~---~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~ 166 (188)
T 2wjg_A 94 DATA---LERNLYLTLQLME---MGANLLLALNKMDLAKSLGIE-IDVDKLEKILGVKVVPLSAAKKMGIEELKKAISIA 166 (188)
T ss_dssp EGGG---HHHHHHHHHHHHT---TTCCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBGGGTBSHHHHHHHHHHH
T ss_pred cchh---HHHHHHHHHHHHh---cCCCEEEEEEhhhccccccch-HHHHHHHHHhCCCeEEEEecCCCCHHHHHHHHHHH
Confidence 9875 4555667776654 468999999999987655444 35677788889999999999999999999999998
Q ss_pred HHhhCC
Q 030225 153 LAEVNP 158 (181)
Q Consensus 153 ~~~~~~ 158 (181)
+.+...
T Consensus 167 ~~~~~~ 172 (188)
T 2wjg_A 167 VKDKKT 172 (188)
T ss_dssp HTTC--
T ss_pred HHhccC
Confidence 877653
No 113
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.94 E-value=2.2e-27 Score=186.78 Aligned_cols=154 Identities=18% Similarity=0.254 Sum_probs=116.7
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEE--------EECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEE
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVL--------SLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY 72 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~--------~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 72 (181)
||||||||+++|.+..+...+.+|++.++..... ..++..+.+.+||+||++.+..++..+++.+|++|+|+
T Consensus 50 ~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~~l~~~d~ii~V~ 129 (535)
T 3dpu_A 50 GMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLL 129 (535)
T ss_dssp SCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHHHHHSSEEEEEEE
T ss_pred CCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHHHccCCcEEEEEE
Confidence 7999999999999999888888999887765421 22334578999999999999999999999999999999
Q ss_pred ECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHH
Q 030225 73 DITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKR 152 (181)
Q Consensus 73 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~ 152 (181)
|+++. +.+..|+..+.... ++.|+++|+||+|+.+...+..++...++...+++++++||++|.|+++++++|.+.
T Consensus 130 D~s~~---~~~~~~~~~l~~~~-~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gi~eL~~~l~~~ 205 (535)
T 3dpu_A 130 DSRTD---SNKHYWLRHIEKYG-GKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGDGVESIAKSLKSA 205 (535)
T ss_dssp CGGGG---GGHHHHHHHHHHHS-SSCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECCC-----CTTHHHHHHHH
T ss_pred eCCCc---hhHHHHHHHHHHhC-CCCCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEEecCcccCHHHHHHHHHHH
Confidence 99865 44567888887764 578999999999998777878888888888889999999999999999999999998
Q ss_pred HHhhCC
Q 030225 153 LAEVNP 158 (181)
Q Consensus 153 ~~~~~~ 158 (181)
+.+...
T Consensus 206 ~~~~~~ 211 (535)
T 3dpu_A 206 VLHPDS 211 (535)
T ss_dssp HTCTTS
T ss_pred Hhcccc
Confidence 876543
No 114
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.94 E-value=3e-26 Score=168.90 Aligned_cols=154 Identities=18% Similarity=0.113 Sum_probs=115.9
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCe-EEEEEEEeCCChhhhh----------ccchhhccCCcEEE
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEV-TIKFDIWDTAGQERYH----------SLAPMYYRGAAAAV 69 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~~~i~D~~G~~~~~----------~~~~~~~~~~d~~i 69 (181)
||||||||+|+|++..+.... +..++++.......... ..++.+|||||...+. .....++.++|+++
T Consensus 19 ~nvGKSTLin~l~g~~~~i~s-~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l~~aD~il 97 (308)
T 3iev_A 19 PNVGKSTLLNNLLGTKVSIIS-PKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVIL 97 (308)
T ss_dssp TTSSHHHHHHHHHTSCCSCCC-SSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHHHHCSEEE
T ss_pred CCCcHHHHHHHHhCCCccccC-CCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHHHHHHhhcCCEEE
Confidence 799999999999998875432 22222222222222222 4678899999985433 45567789999999
Q ss_pred EEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcC--CeEEEEecCCCCCHHHHHH
Q 030225 70 VVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENG--LSFLETSAKSAHNVNELFY 147 (181)
Q Consensus 70 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~~~~ 147 (181)
+|+|++++.+......|+..+.. .+.|+++++||+|+.............+.+.++ .+++++||++|.|++++|+
T Consensus 98 ~VvD~~~~~~~~~~~~~~~~l~~---~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~vSA~~g~gv~~L~~ 174 (308)
T 3iev_A 98 FMIDATEGWRPRDEEIYQNFIKP---LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVPISALKGANLDELVK 174 (308)
T ss_dssp EEEETTTBSCHHHHHHHHHHTGG---GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEECBTTTTBSHHHHHH
T ss_pred EEEeCCCCCCchhHHHHHHHHHh---cCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEEEeCCCCCCHHHHHH
Confidence 99999998888877777777755 368999999999997445555666777777775 7899999999999999999
Q ss_pred HHHHHHHhhCC
Q 030225 148 EIAKRLAEVNP 158 (181)
Q Consensus 148 ~l~~~~~~~~~ 158 (181)
+|.+.+.+..+
T Consensus 175 ~l~~~l~~~~~ 185 (308)
T 3iev_A 175 TILKYLPEGEP 185 (308)
T ss_dssp HHHHHSCBCCC
T ss_pred HHHHhCccCCC
Confidence 99998866543
No 115
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.93 E-value=4e-26 Score=152.90 Aligned_cols=142 Identities=22% Similarity=0.148 Sum_probs=98.2
Q ss_pred CCCchhHHHHHHhhCCCCC-ccccceeeeEEEEEEEECCeEEEEEEEeCCChhh-------hhccchhhccCCcEEEEEE
Q 030225 1 MGTGKTSLVLRFVKGQFFD-FQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER-------YHSLAPMYYRGAAAAVVVY 72 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~~~~d~~i~v~ 72 (181)
+|||||||+++|.+..+.. ...++++.+.....+..++. .+.+||+||... +...+..+++.+|++++|+
T Consensus 10 ~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~i~v~ 87 (161)
T 2dyk_A 10 PNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRG--RFLLVDTGGLWSGDKWEKKIQEKVDRALEDAEVVLFAV 87 (161)
T ss_dssp TTSSHHHHHHHHHHCCC-----------CCEEEEEEETTE--EEEEEECGGGCSSSSCCHHHHHHHHHHTTTCSEEEEEE
T ss_pred CCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCc--eEEEEECCCCCCccchHHHHHHHHHHHHHhCCEEEEEE
Confidence 6899999999999887532 22233344444555556654 678999999876 3445567889999999999
Q ss_pred ECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCC-eEEEEecCCCCCHHHHHHHHHH
Q 030225 73 DITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGL-SFLETSAKSAHNVNELFYEIAK 151 (181)
Q Consensus 73 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~~~~~l~~ 151 (181)
|++++.+.. ..|+..+... .+.|+++++||+|+.+.. +++..++ ..++ +++++||+++.|++++|++|++
T Consensus 88 d~~~~~~~~--~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~----~~~~~~~-~~~~~~~~~~Sa~~~~gv~~l~~~l~~ 158 (161)
T 2dyk_A 88 DGRAELTQA--DYEVAEYLRR--KGKPVILVATKVDDPKHE----LYLGPLY-GLGFGDPIPTSSEHARGLEELLEAIWE 158 (161)
T ss_dssp ESSSCCCHH--HHHHHHHHHH--HTCCEEEEEECCCSGGGG----GGCGGGG-GGSSCSCEECBTTTTBSHHHHHHHHHH
T ss_pred ECCCcccHh--HHHHHHHHHh--cCCCEEEEEECcccccch----HhHHHHH-hCCCCCeEEEecccCCChHHHHHHHHH
Confidence 999753322 2233333222 468999999999996642 2333444 5677 8999999999999999999987
Q ss_pred HH
Q 030225 152 RL 153 (181)
Q Consensus 152 ~~ 153 (181)
.+
T Consensus 159 ~l 160 (161)
T 2dyk_A 159 RL 160 (161)
T ss_dssp HC
T ss_pred hC
Confidence 64
No 116
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.93 E-value=2.1e-25 Score=160.51 Aligned_cols=146 Identities=16% Similarity=0.132 Sum_probs=110.3
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhcc------chhhc--cCCcEEEEEE
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSL------APMYY--RGAAAAVVVY 72 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~------~~~~~--~~~d~~i~v~ 72 (181)
||||||||+++|.+..+.....+.++.+.....+...+ ..+.+||+||...+... ...++ ..+|++++|+
T Consensus 14 ~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~ii~V~ 91 (258)
T 3a1s_A 14 PNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG--YTINLIDLPGTYSLGYSSIDEKIARDYLLKGDADLVILVA 91 (258)
T ss_dssp TTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSSCCSSSHHHHHHHHHHHHSCCSEEEEEE
T ss_pred CCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECC--eEEEEEECCCcCccCCCCHHHHHHHHHHhhcCCCEEEEEe
Confidence 79999999999998776544445444444444444433 67889999998776543 24555 5899999999
Q ss_pred ECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHH
Q 030225 73 DITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKR 152 (181)
Q Consensus 73 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~ 152 (181)
|+++.++.. .|...+.. .+.|+++++||+|+.+.+.+.. +...+++.++++++++||++|.|++++|++|.+.
T Consensus 92 D~t~~~~~~---~~~~~l~~---~~~pvilv~NK~Dl~~~~~i~~-~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~ 164 (258)
T 3a1s_A 92 DSVNPEQSL---YLLLEILE---MEKKVILAMTAIDEAKKTGMKI-DRYELQKHLGIPVVFTSSVTGEGLEELKEKIVEY 164 (258)
T ss_dssp ETTSCHHHH---HHHHHHHT---TTCCEEEEEECHHHHHHTTCCB-CHHHHHHHHCSCEEECCTTTCTTHHHHHHHHHHH
T ss_pred CCCchhhHH---HHHHHHHh---cCCCEEEEEECcCCCCccchHH-HHHHHHHHcCCCEEEEEeeCCcCHHHHHHHHHHH
Confidence 999876543 35555544 3689999999999876555443 3677788889999999999999999999999997
Q ss_pred HHh
Q 030225 153 LAE 155 (181)
Q Consensus 153 ~~~ 155 (181)
+..
T Consensus 165 ~~~ 167 (258)
T 3a1s_A 165 AQK 167 (258)
T ss_dssp HHS
T ss_pred hhc
Confidence 653
No 117
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.93 E-value=5.2e-26 Score=154.47 Aligned_cols=145 Identities=18% Similarity=0.193 Sum_probs=104.4
Q ss_pred CCCchhHHHHHHhhCCCC-CccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhc------c--chhhccCCcEEEEE
Q 030225 1 MGTGKTSLVLRFVKGQFF-DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHS------L--APMYYRGAAAAVVV 71 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~------~--~~~~~~~~d~~i~v 71 (181)
||||||||+++|.+.... ....++++.++....+.+++. .+.+||+||...+.. + ...+++++|++++|
T Consensus 13 ~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ad~~i~v 90 (172)
T 2gj8_A 13 PNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGM--PLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFM 90 (172)
T ss_dssp TTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTE--EEEEEECCCCSCCSSHHHHHHHHHHHHHHHTCSEEEEE
T ss_pred CCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCe--EEEEEECCCcccchhHHHHHHHHHHHHHHHhCCEEEEE
Confidence 799999999999987642 122244445555566667764 477999999754221 1 12357899999999
Q ss_pred EECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHH
Q 030225 72 YDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAK 151 (181)
Q Consensus 72 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 151 (181)
+|++++.+++ ...|+..+......++|+++++||+|+.+... .++...+.+++++||+++.|++++|++|.+
T Consensus 91 ~D~~~~~s~~-~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~-------~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~ 162 (172)
T 2gj8_A 91 VDGTTTDAVD-PAEIWPEFIARLPAKLPITVVRNKADITGETL-------GMSEVNGHALIRLSARTGEGVDVLRNHLKQ 162 (172)
T ss_dssp EETTTCCCCS-HHHHCHHHHHHSCTTCCEEEEEECHHHHCCCC-------EEEEETTEEEEECCTTTCTTHHHHHHHHHH
T ss_pred EECCCCCCHH-HHHHHHHHHHhcccCCCEEEEEECccCCcchh-------hhhhccCCceEEEeCCCCCCHHHHHHHHHH
Confidence 9999988765 45677777766556799999999999853211 111224678999999999999999999988
Q ss_pred HHHh
Q 030225 152 RLAE 155 (181)
Q Consensus 152 ~~~~ 155 (181)
.+..
T Consensus 163 ~~~~ 166 (172)
T 2gj8_A 163 SMGF 166 (172)
T ss_dssp HC--
T ss_pred Hhhh
Confidence 7643
No 118
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.93 E-value=7.7e-26 Score=162.55 Aligned_cols=143 Identities=15% Similarity=0.074 Sum_probs=109.8
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhc----------cchhhc--cCCcEE
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHS----------LAPMYY--RGAAAA 68 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~----------~~~~~~--~~~d~~ 68 (181)
||||||||+|+|.+........++++.+.....+..++. .+.+||+||...+.. +...++ .++|++
T Consensus 10 ~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~v 87 (256)
T 3iby_A 10 PNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH--LIEITDLPGVYSLVANAEGISQDEQIAAQSVIDLEYDCI 87 (256)
T ss_dssp TTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE--EEEEEECCCCSSCC------CHHHHHHHHHHHHSCCSEE
T ss_pred CCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe--EEEEEeCCCcccccccccCCCHHHHHHHHHHhhCCCCEE
Confidence 799999999999998765555566666666666666665 778999999876653 455666 899999
Q ss_pred EEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Q 030225 69 VVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYE 148 (181)
Q Consensus 69 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~ 148 (181)
|+|+|+++.++...+..++. ..+.|+++++||+|+........ ....+.+..+++++++||++|.|++++|++
T Consensus 88 i~VvDas~~~~~~~l~~~l~------~~~~pvilv~NK~Dl~~~~~~~~-~~~~l~~~lg~~vi~~SA~~g~gi~el~~~ 160 (256)
T 3iby_A 88 INVIDACHLERHLYLTSQLF------ELGKPVVVALNMMDIAEHRGISI-DTEKLESLLGCSVIPIQAHKNIGIPALQQS 160 (256)
T ss_dssp EEEEEGGGHHHHHHHHHHHT------TSCSCEEEEEECHHHHHHTTCEE-CHHHHHHHHCSCEEECBGGGTBSHHHHHHH
T ss_pred EEEeeCCCchhHHHHHHHHH------HcCCCEEEEEEChhcCCcCCcHH-HHHHHHHHcCCCEEEEECCCCCCHHHHHHH
Confidence 99999998766554433322 23789999999999865443322 244567778999999999999999999999
Q ss_pred HHHH
Q 030225 149 IAKR 152 (181)
Q Consensus 149 l~~~ 152 (181)
|.+.
T Consensus 161 i~~~ 164 (256)
T 3iby_A 161 LLHC 164 (256)
T ss_dssp HHTC
T ss_pred HHhh
Confidence 9886
No 119
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.93 E-value=6e-26 Score=164.29 Aligned_cols=145 Identities=17% Similarity=0.132 Sum_probs=108.8
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhh------ccchhhcc--CCcEEEEEE
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYH------SLAPMYYR--GAAAAVVVY 72 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~------~~~~~~~~--~~d~~i~v~ 72 (181)
||||||||+++|.+........+ |+++......++. ...+.+||+||...+. .+...++. ++|++++|+
T Consensus 12 ~nvGKSTL~n~L~g~~~~v~~~p--g~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~vi~V~ 88 (272)
T 3b1v_A 12 PNSGKTSLFNLITGHNQRVGNWP--GVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQRADSILNVV 88 (272)
T ss_dssp TTSSHHHHHHHHHCCCCCCCSSS--CCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTCCSEEEEEE
T ss_pred CCCCHHHHHHHHHCCCCcccCCC--CCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcCCCCEEEEEe
Confidence 79999999999998764333223 4444444555565 6678999999987765 34455664 699999999
Q ss_pred ECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHH
Q 030225 73 DITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKR 152 (181)
Q Consensus 73 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~ 152 (181)
|+++.++. ..|...+.+ .+.|+++++||+|+.....+. .+...+++.++++++++||++|.|++++|++|.+.
T Consensus 89 D~t~~e~~---~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~~-~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~ 161 (272)
T 3b1v_A 89 DATNLERN---LYLTTQLIE---TGIPVTIALNMIDVLDGQGKK-INVDKLSYHLGVPVVATSALKQTGVDQVVKKAAHT 161 (272)
T ss_dssp EGGGHHHH---HHHHHHHHH---TCSCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBTTTTBSHHHHHHHHHHS
T ss_pred cCCchHhH---HHHHHHHHh---cCCCEEEEEEChhhCCcCCcH-HHHHHHHHHcCCCEEEEEccCCCCHHHHHHHHHHH
Confidence 99986554 345555544 478999999999986554444 34567788889999999999999999999999886
Q ss_pred HHh
Q 030225 153 LAE 155 (181)
Q Consensus 153 ~~~ 155 (181)
+..
T Consensus 162 ~~~ 164 (272)
T 3b1v_A 162 TTS 164 (272)
T ss_dssp CTT
T ss_pred Hhh
Confidence 543
No 120
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.92 E-value=5e-25 Score=151.89 Aligned_cols=145 Identities=22% Similarity=0.286 Sum_probs=105.2
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCC----------hhhhhccchhhccCC---cE
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAG----------QERYHSLAPMYYRGA---AA 67 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~~~~~~~~~~~~---d~ 67 (181)
+|||||||+++|++... ..+.++.+.++.......+. ++.+||+|| ++.+..++..+++.+ |+
T Consensus 32 ~~~GKSsli~~l~~~~~-~~~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (195)
T 3pqc_A 32 SNVGKSSLLNALFNRKI-AFVSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQM 107 (195)
T ss_dssp TTSSHHHHHHHHHTSCC-SCCCSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHHHHHHHHHHHHCTTEEE
T ss_pred CCCCHHHHHHHHHcCcc-ccccCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHHHHHHHHHHhcCcCceE
Confidence 69999999999998874 33456666655555544443 467999999 667777777777665 99
Q ss_pred EEEEEECCChhH--HHHHHHHHHHHHHhCCCCceEEEEEeCCCCccc--ccCCHHHHHHHHHHcC-CeEEEEecCCCCCH
Q 030225 68 AVVVYDITSMDS--FERAKKWVQELQRQGNPNLIMFLVANKVDLEEK--RKVKNEEGELYAQENG-LSFLETSAKSAHNV 142 (181)
Q Consensus 68 ~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi 142 (181)
+++|+|+++..+ ...+..|+... +.|+++|+||+|+.+. .....++...++...+ ++++++||+++.|+
T Consensus 108 vi~v~d~~~~~~~~~~~~~~~~~~~------~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 181 (195)
T 3pqc_A 108 VFLLVDGRIPPQDSDLMMVEWMKSL------NIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTIIPTSSVTGEGI 181 (195)
T ss_dssp EEEEEETTSCCCHHHHHHHHHHHHT------TCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCEEECCTTTCTTH
T ss_pred EEEEecCCCCCCHHHHHHHHHHHHc------CCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCceEEEecCCCCCH
Confidence 999999987533 23333443322 6899999999998643 2333344555565534 79999999999999
Q ss_pred HHHHHHHHHHHHh
Q 030225 143 NELFYEIAKRLAE 155 (181)
Q Consensus 143 ~~~~~~l~~~~~~ 155 (181)
+++|++|.+.+.+
T Consensus 182 ~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 182 SELLDLISTLLKE 194 (195)
T ss_dssp HHHHHHHHHHHC-
T ss_pred HHHHHHHHHHhhc
Confidence 9999999988754
No 121
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.91 E-value=6.3e-25 Score=154.73 Aligned_cols=155 Identities=12% Similarity=0.113 Sum_probs=102.1
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEEC-CeEEEEEEEeCCCh----------hhhhccchhhccC---Cc
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLN-EVTIKFDIWDTAGQ----------ERYHSLAPMYYRG---AA 66 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~D~~G~----------~~~~~~~~~~~~~---~d 66 (181)
+|||||||+++|++........++.+++......... .....+.+|||||. +.+..+...++.. +|
T Consensus 38 ~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 117 (223)
T 4dhe_A 38 SNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLC 117 (223)
T ss_dssp CHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEE
T ss_pred CCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHHHHHHhcCcCcC
Confidence 5899999999999987433333444444444454554 44467889999993 4445555566555 78
Q ss_pred EEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCC--HHHHHHHHHH-------cCCeEEEEecC
Q 030225 67 AAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVK--NEEGELYAQE-------NGLSFLETSAK 137 (181)
Q Consensus 67 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~--~~~~~~~~~~-------~~~~~~~~Sa~ 137 (181)
++++|+|++++.+. ....|+..+.. .+.|+++|+||+|+....+.. .++....... .+.+++++||+
T Consensus 118 ~vi~v~d~~~~~~~-~~~~~~~~l~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~SA~ 193 (223)
T 4dhe_A 118 GMILMMDARRPLTE-LDRRMIEWFAP---TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGYAGKLTVQLFSAL 193 (223)
T ss_dssp EEEEEEETTSCCCH-HHHHHHHHHGG---GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTCCSCEEEEEEBTT
T ss_pred EEEEEEeCCCCCCH-HHHHHHHHHHh---cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcccCCCCeEEEeecC
Confidence 89999999874332 22334444433 468999999999986533321 1222223333 45789999999
Q ss_pred CCCCHHHHHHHHHHHHHhhCCC
Q 030225 138 SAHNVNELFYEIAKRLAEVNPS 159 (181)
Q Consensus 138 ~~~gi~~~~~~l~~~~~~~~~~ 159 (181)
++.|++++|++|.+.+.....+
T Consensus 194 ~g~gv~~l~~~l~~~~~~~~~~ 215 (223)
T 4dhe_A 194 KRTGLDDAHALIESWLRPAAAD 215 (223)
T ss_dssp TTBSHHHHHHHHHHHHC-----
T ss_pred CCcCHHHHHHHHHHhcCccCCc
Confidence 9999999999999988765443
No 122
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.91 E-value=4.6e-24 Score=154.70 Aligned_cols=149 Identities=21% Similarity=0.141 Sum_probs=113.6
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhc------cchhhc--cCCcEEEEEE
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHS------LAPMYY--RGAAAAVVVY 72 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~------~~~~~~--~~~d~~i~v~ 72 (181)
||||||||+++|.+..+.....++++.+.....+..++. .+.+||+||...+.. ....++ .++|++++|+
T Consensus 12 ~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~ 89 (271)
T 3k53_A 12 PNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREK--EFLVVDLPGIYSLTAHSIDELIARNFILDGNADVIVDIV 89 (271)
T ss_dssp SSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTE--EEEEEECCCCSCCCSSCHHHHHHHHHHHTTCCSEEEEEE
T ss_pred CCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCc--eEEEEeCCCccccccCCHHHHHHHHhhhccCCcEEEEEe
Confidence 799999999999998775555566666666666666665 478999999877665 455555 7899999999
Q ss_pred ECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHH
Q 030225 73 DITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKR 152 (181)
Q Consensus 73 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~ 152 (181)
|+++.+. ...|...+... ...|+++++||+|+.+....... ...+.+.++++++++||++|.|+.++++++.+.
T Consensus 90 D~~~~~~---~~~~~~~~~~~--~~~p~ilv~NK~Dl~~~~~~~~~-~~~l~~~lg~~~~~~Sa~~g~gi~~l~~~i~~~ 163 (271)
T 3k53_A 90 DSTCLMR---NLFLTLELFEM--EVKNIILVLNKFDLLKKKGAKID-IKKMRKELGVPVIPTNAKKGEGVEELKRMIALM 163 (271)
T ss_dssp EGGGHHH---HHHHHHHHHHT--TCCSEEEEEECHHHHHHHTCCCC-HHHHHHHHSSCEEECBGGGTBTHHHHHHHHHHH
T ss_pred cCCcchh---hHHHHHHHHhc--CCCCEEEEEEChhcCcccccHHH-HHHHHHHcCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 9997542 33444444443 23899999999998654443332 566777889999999999999999999999998
Q ss_pred HHhhC
Q 030225 153 LAEVN 157 (181)
Q Consensus 153 ~~~~~ 157 (181)
+....
T Consensus 164 ~~~~~ 168 (271)
T 3k53_A 164 AEGKV 168 (271)
T ss_dssp HHTCC
T ss_pred Hhccc
Confidence 76554
No 123
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.91 E-value=6.2e-25 Score=159.43 Aligned_cols=147 Identities=15% Similarity=0.135 Sum_probs=107.6
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhc----------cchhhc--cCCcEE
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHS----------LAPMYY--RGAAAA 68 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~----------~~~~~~--~~~d~~ 68 (181)
||||||||+|+|.+........++++.+.....+...+. .+.+||+||...+.. .+..++ .++|++
T Consensus 12 ~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~i 89 (274)
T 3i8s_A 12 PNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDH--QVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLL 89 (274)
T ss_dssp TTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSC--EEEEEECCCCSCSCC----CCHHHHHHHHHHHHTCCSEE
T ss_pred CCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCC--ceEEEECcCCCccccccccCCHHHHHHHHHHhhcCCCEE
Confidence 799999999999998765555555555555555555554 577999999876552 122333 799999
Q ss_pred EEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Q 030225 69 VVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYE 148 (181)
Q Consensus 69 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~ 148 (181)
++|+|+++.+....+..+ +.+. +.|+++++||+|+.+..... .....+.+..+++++++||++|.|+++++++
T Consensus 90 i~VvD~~~~~~~~~~~~~---l~~~---~~p~ivv~NK~Dl~~~~~~~-~~~~~l~~~lg~~~i~~SA~~g~gi~el~~~ 162 (274)
T 3i8s_A 90 INVVDASNLERNLYLTLQ---LLEL---GIPCIVALNMLDIAEKQNIR-IEIDALSARLGCPVIPLVSTRGRGIEALKLA 162 (274)
T ss_dssp EEEEEGGGHHHHHHHHHH---HHHH---TCCEEEEEECHHHHHHTTEE-ECHHHHHHHHTSCEEECCCGGGHHHHHHHHH
T ss_pred EEEecCCChHHHHHHHHH---HHhc---CCCEEEEEECccchhhhhHH-HHHHHHHHhcCCCEEEEEcCCCCCHHHHHHH
Confidence 999999987665544443 3333 68999999999986543322 2245667778999999999999999999999
Q ss_pred HHHHHHhh
Q 030225 149 IAKRLAEV 156 (181)
Q Consensus 149 l~~~~~~~ 156 (181)
|.+.+.+.
T Consensus 163 i~~~~~~~ 170 (274)
T 3i8s_A 163 IDRYKANE 170 (274)
T ss_dssp HHTCCCCC
T ss_pred HHHHHhcC
Confidence 98765543
No 124
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.90 E-value=2.4e-24 Score=158.03 Aligned_cols=147 Identities=18% Similarity=0.122 Sum_probs=99.7
Q ss_pred CCCchhHHHHHHhhCCCCCc-cccceeeeEEEEEEEECCeEEEEEEEeCCChhh--------hhccchhhccCCcEEEEE
Q 030225 1 MGTGKTSLVLRFVKGQFFDF-QESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER--------YHSLAPMYYRGAAAAVVV 71 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~~~~~d~~i~v 71 (181)
||||||||+|+|++..+... ..+.++......... ....++.+|||||... +......+++++|++++|
T Consensus 16 ~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~--~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ad~il~V 93 (301)
T 1wf3_A 16 PNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILT--EGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWV 93 (301)
T ss_dssp TTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEE--ETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEE
T ss_pred CCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEE--eCCcEEEEecCccccchhhHHHHHHHHHHHHHHhcCCEEEEE
Confidence 79999999999999887532 222222121111222 2346889999999764 444556788999999999
Q ss_pred EECCChhHHHHHHHHH-HHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHc-C-CeEEEEecCCCCCHHHHHHH
Q 030225 72 YDITSMDSFERAKKWV-QELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQEN-G-LSFLETSAKSAHNVNELFYE 148 (181)
Q Consensus 72 ~d~~~~~s~~~~~~~~-~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~-~-~~~~~~Sa~~~~gi~~~~~~ 148 (181)
+|++++.+.. ..|+ ..+... .++.|+++++||+|+...... ....++.+ + .+++++||++|.|+++++++
T Consensus 94 vD~~~~~~~~--~~~i~~~l~~~-~~~~p~ilV~NK~Dl~~~~~~----~~~~~~~~~~~~~~~~iSA~~g~gv~~l~~~ 166 (301)
T 1wf3_A 94 VDLRHPPTPE--DELVARALKPL-VGKVPILLVGNKLDAAKYPEE----AMKAYHELLPEAEPRMLSALDERQVAELKAD 166 (301)
T ss_dssp EETTSCCCHH--HHHHHHHHGGG-TTTSCEEEEEECGGGCSSHHH----HHHHHHHTSTTSEEEECCTTCHHHHHHHHHH
T ss_pred EECCCCCChH--HHHHHHHHHhh-cCCCCEEEEEECcccCCchHH----HHHHHHHhcCcCcEEEEeCCCCCCHHHHHHH
Confidence 9998764433 3444 344333 247899999999998643220 22223332 3 57899999999999999999
Q ss_pred HHHHHHhh
Q 030225 149 IAKRLAEV 156 (181)
Q Consensus 149 l~~~~~~~ 156 (181)
|.+.+.+.
T Consensus 167 l~~~l~~~ 174 (301)
T 1wf3_A 167 LLALMPEG 174 (301)
T ss_dssp HHTTCCBC
T ss_pred HHHhcccC
Confidence 98876544
No 125
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.90 E-value=8.7e-24 Score=162.55 Aligned_cols=151 Identities=21% Similarity=0.145 Sum_probs=105.8
Q ss_pred CCCchhHHHHHHhhCCCC-CccccceeeeEEEEEEEECCeEEEEEEEeCCCh----------hhhhccch-hhccCCcEE
Q 030225 1 MGTGKTSLVLRFVKGQFF-DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ----------ERYHSLAP-MYYRGAAAA 68 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~----------~~~~~~~~-~~~~~~d~~ 68 (181)
||||||||+|+|++.... ....++++.+.....+..++. .+.+|||||+ +.|..+.. .+++.+|++
T Consensus 184 ~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ 261 (436)
T 2hjg_A 184 PNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVV 261 (436)
T ss_dssp TTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTE--EEEETTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEE
T ss_pred CCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCe--EEEEEECCCcCcCccccchHHHHHHHHHHHHHHhCCEE
Confidence 799999999999987753 222344444444445556665 4789999998 44444433 478889999
Q ss_pred EEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHH-HH----cCCeEEEEecCCCCCHH
Q 030225 69 VVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYA-QE----NGLSFLETSAKSAHNVN 143 (181)
Q Consensus 69 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~-~~----~~~~~~~~Sa~~~~gi~ 143 (181)
++|+|++++.+++.. .|+..+.. .+.|+++++||+|+.+......++..... +. .+++++++||++|.|++
T Consensus 262 llv~D~~~~~s~~~~-~~~~~~~~---~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~SA~tg~~v~ 337 (436)
T 2hjg_A 262 AVVLDGEEGIIEQDK-RIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIH 337 (436)
T ss_dssp EEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGG
T ss_pred EEEEcCCcCCcHHHH-HHHHHHHH---cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEEEecccCCCHH
Confidence 999999998777664 46666654 46899999999999765554433333222 22 35799999999999999
Q ss_pred HHHHHHHHHHHhhC
Q 030225 144 ELFYEIAKRLAEVN 157 (181)
Q Consensus 144 ~~~~~l~~~~~~~~ 157 (181)
++|+.+.+.+.+..
T Consensus 338 ~l~~~i~~~~~~~~ 351 (436)
T 2hjg_A 338 TLMPAIIKASENHS 351 (436)
T ss_dssp GHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhh
Confidence 99999998887644
No 126
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.90 E-value=7e-25 Score=154.03 Aligned_cols=132 Identities=16% Similarity=0.172 Sum_probs=97.9
Q ss_pred CCCchhHHHHHHhhCCCCC---ccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccC----CcEEEEEEE
Q 030225 1 MGTGKTSLVLRFVKGQFFD---FQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG----AAAAVVVYD 73 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~----~d~~i~v~d 73 (181)
+|||||||+++|.+..+.. .+.++++.++ ..+.+.+||+||++.++..+..+++. +|++|+|+|
T Consensus 21 ~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~D 91 (218)
T 1nrj_B 21 QNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVD 91 (218)
T ss_dssp TTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG---------GGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEEEE
T ss_pred CCCCHHHHHHHHhcCCCCCeeeecCceEEEEe---------eCceEEEEECCCcHHHHHHHHHHHHhccccCCEEEEEEE
Confidence 6999999999999987654 2444444332 44578899999999998888888877 899999999
Q ss_pred CC-ChhHHHHHHHHHHHHHHh----CCCCceEEEEEeCCCCcccccCC------HHHHHHHHHHcCCeEEEEecCCCCC
Q 030225 74 IT-SMDSFERAKKWVQELQRQ----GNPNLIMFLVANKVDLEEKRKVK------NEEGELYAQENGLSFLETSAKSAHN 141 (181)
Q Consensus 74 ~~-~~~s~~~~~~~~~~~~~~----~~~~~p~ivi~nK~D~~~~~~~~------~~~~~~~~~~~~~~~~~~Sa~~~~g 141 (181)
++ +++++..+..|+..+... ...+.|+++++||+|+.....+. ..++..++...+++++++||+++.+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~Sa~~~~~ 170 (218)
T 1nrj_B 92 STVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEE 170 (218)
T ss_dssp TTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred CCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHhccccccccccccc
Confidence 99 888999988888887664 34689999999999997654433 3456667777778899999998764
No 127
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.90 E-value=9e-23 Score=153.22 Aligned_cols=151 Identities=17% Similarity=0.183 Sum_probs=110.0
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhc---------cchhhccCCcEEEEE
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHS---------LAPMYYRGAAAAVVV 71 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~---------~~~~~~~~~d~~i~v 71 (181)
||||||||+++|.+........+..+.......+... ...+.+|||||...... ....+...+|++++|
T Consensus 176 ~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~illV 253 (357)
T 2e87_A 176 PNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDG--YFRYQIIDTPGLLDRPISERNEIEKQAILALRYLGNLIIYI 253 (357)
T ss_dssp TTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEET--TEEEEEEECTTTSSSCSTTSCHHHHHHHHGGGGTCSEEEEE
T ss_pred CCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEec--CceEEEEeCCCccccchhhhhHHHHHHHHHHHhcCCEEEEE
Confidence 7999999999999876432222222222323333333 35688999999753211 112344579999999
Q ss_pred EECCChh--HHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Q 030225 72 YDITSMD--SFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 149 (181)
Q Consensus 72 ~d~~~~~--s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l 149 (181)
+|++++. +++....|+..+.... .+.|+++++||+|+.....+ ++...++...+++++++||++|+|+++++++|
T Consensus 254 ~D~s~~~~~~~~~~~~~~~~i~~~~-~~~piilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~iSA~~g~gi~~l~~~i 330 (357)
T 2e87_A 254 FDPSEHCGFPLEEQIHLFEEVHGEF-KDLPFLVVINKIDVADEENI--KRLEKFVKEKGLNPIKISALKGTGIDLVKEEI 330 (357)
T ss_dssp ECTTCTTSSCHHHHHHHHHHHHHHT-TTSCEEEEECCTTTCCHHHH--HHHHHHHHHTTCCCEECBTTTTBTHHHHHHHH
T ss_pred EeCCccccCCHHHHHHHHHHHHHhc-CCCCEEEEEECcccCChHHH--HHHHHHHHhcCCCeEEEeCCCCcCHHHHHHHH
Confidence 9999877 6788888988887754 27899999999999654332 44556677788999999999999999999999
Q ss_pred HHHHHhh
Q 030225 150 AKRLAEV 156 (181)
Q Consensus 150 ~~~~~~~ 156 (181)
.+.+...
T Consensus 331 ~~~l~~~ 337 (357)
T 2e87_A 331 IKTLRPL 337 (357)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988664
No 128
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.90 E-value=1.3e-23 Score=162.40 Aligned_cols=153 Identities=22% Similarity=0.170 Sum_probs=110.0
Q ss_pred CCCchhHHHHHHhhCCC-CCccccceeeeEEEEEEEECCeEEEEEEEeCCC----------hhhhhccch-hhccCCcEE
Q 030225 1 MGTGKTSLVLRFVKGQF-FDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAG----------QERYHSLAP-MYYRGAAAA 68 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~~~~~~-~~~~~~d~~ 68 (181)
||+|||||+++|++... .....++++.+.....+..++. .+.+||||| ++.|..+.. .+++.+|++
T Consensus 204 ~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ 281 (456)
T 4dcu_A 204 PNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVV 281 (456)
T ss_dssp TTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE--EEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEE
T ss_pred CCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--eEEEEECCCCCcCcccchHHHHHHHHHHHHHHhhCCEE
Confidence 69999999999997652 2222334444433345555665 678999999 566666544 478899999
Q ss_pred EEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHc-----CCeEEEEecCCCCCHH
Q 030225 69 VVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQEN-----GLSFLETSAKSAHNVN 143 (181)
Q Consensus 69 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~-----~~~~~~~Sa~~~~gi~ 143 (181)
++|+|++++-. +....|+..+.. .+.|+++++||+|+.+.++...++..+.++.. +++++++||++|.|++
T Consensus 282 llviD~~~~~~-~~~~~~~~~~~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~ 357 (456)
T 4dcu_A 282 AVVLDGEEGII-EQDKRIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIH 357 (456)
T ss_dssp EEEEETTTCCC-HHHHHHHHHHHH---TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGG
T ss_pred EEEEeCCCCcC-HHHHHHHHHHHH---cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEEEEcCCCCcCHH
Confidence 99999987433 223445555544 46899999999999876666667777666665 5799999999999999
Q ss_pred HHHHHHHHHHHhhCCC
Q 030225 144 ELFYEIAKRLAEVNPS 159 (181)
Q Consensus 144 ~~~~~l~~~~~~~~~~ 159 (181)
++|+++.+.+.+....
T Consensus 358 ~l~~~i~~~~~~~~~~ 373 (456)
T 4dcu_A 358 TLMPAIIKASENHSLR 373 (456)
T ss_dssp GHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHhccc
Confidence 9999999988766543
No 129
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.90 E-value=6.5e-23 Score=158.51 Aligned_cols=147 Identities=15% Similarity=0.136 Sum_probs=89.7
Q ss_pred CCCchhHHHHHHhhCCCC-CccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccc--------hhhccCCcEEEEE
Q 030225 1 MGTGKTSLVLRFVKGQFF-DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLA--------PMYYRGAAAAVVV 71 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~--------~~~~~~~d~~i~v 71 (181)
||||||||+|+|.+.... ....++++.+.....+..++ +.+.+|||||...+...+ ..++.++|++++|
T Consensus 242 ~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~V 319 (476)
T 3gee_A 242 PNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMKMAEADLILYL 319 (476)
T ss_dssp TTSSHHHHHHHCC------------------CEEEEETT--EEEEEEC--------------------CCCSSCSEEEEE
T ss_pred CCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHhhcccCCEEEEE
Confidence 799999999999987532 22334444444445556665 468899999987655433 3468899999999
Q ss_pred EECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHH
Q 030225 72 YDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAK 151 (181)
Q Consensus 72 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 151 (181)
+|++++.++..+..+...+... .+.|+++|+||+|+...... ....+......+++++||++|+|+++++++|.+
T Consensus 320 vD~s~~~s~~~~~~~~~~l~~l--~~~piIvV~NK~Dl~~~~~~---~~~~l~~~~~~~~i~vSAktg~GI~eL~~~i~~ 394 (476)
T 3gee_A 320 LDLGTERLDDELTEIRELKAAH--PAAKFLTVANKLDRAANADA---LIRAIADGTGTEVIGISALNGDGIDTLKQHMGD 394 (476)
T ss_dssp EETTTCSSGGGHHHHHHHHHHC--TTSEEEEEEECTTSCTTTHH---HHHHHHHHHTSCEEECBTTTTBSHHHHHHHHTH
T ss_pred EECCCCcchhhhHHHHHHHHhc--CCCCEEEEEECcCCCCccch---hHHHHHhcCCCceEEEEECCCCCHHHHHHHHHH
Confidence 9999987775433333333332 27899999999999654432 223333332478999999999999999999999
Q ss_pred HHH
Q 030225 152 RLA 154 (181)
Q Consensus 152 ~~~ 154 (181)
.+.
T Consensus 395 ~~~ 397 (476)
T 3gee_A 395 LVK 397 (476)
T ss_dssp HHH
T ss_pred HHh
Confidence 887
No 130
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.89 E-value=9.2e-24 Score=157.10 Aligned_cols=152 Identities=20% Similarity=0.199 Sum_probs=110.1
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhh----hhccchhhcc---CCcEEEEEEE
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER----YHSLAPMYYR---GAAAAVVVYD 73 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----~~~~~~~~~~---~~d~~i~v~d 73 (181)
||||||||+++|++........+..+.......+.+++. ..+.+||+||... +..+...|++ .+|++|+|+|
T Consensus 167 ~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~-~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d~ll~VvD 245 (342)
T 1lnz_A 167 PSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDG-RSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVID 245 (342)
T ss_dssp TTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSS-CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEE
T ss_pred CCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCC-ceEEEecCCCCcccccccchhHHHHHHHHHhccEEEEEEE
Confidence 799999999999986543211121111122223444431 4688999999643 3344455544 4999999999
Q ss_pred CCC---hhHHHHHHHHHHHHHHhC--CCCceEEEEEeCCCCcccccCCHHHHHHHHHHcC--CeEEEEecCCCCCHHHHH
Q 030225 74 ITS---MDSFERAKKWVQELQRQG--NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENG--LSFLETSAKSAHNVNELF 146 (181)
Q Consensus 74 ~~~---~~s~~~~~~~~~~~~~~~--~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~~~ 146 (181)
+++ .++++.+..|+..+.... ...+|+++|+||+|+.... +....+.+.++ .+++++||++++|+++++
T Consensus 246 ~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~----e~~~~l~~~l~~~~~v~~iSA~tg~gi~eL~ 321 (342)
T 1lnz_A 246 MSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAA----ENLEAFKEKLTDDYPVFPISAVTREGLRELL 321 (342)
T ss_dssp SSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH----HHHHHHHHHCCSCCCBCCCSSCCSSTTHHHH
T ss_pred CCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCH----HHHHHHHHHhhcCCCEEEEECCCCcCHHHHH
Confidence 998 788999999999988764 2578999999999986432 34455666666 689999999999999999
Q ss_pred HHHHHHHHhhC
Q 030225 147 YEIAKRLAEVN 157 (181)
Q Consensus 147 ~~l~~~~~~~~ 157 (181)
++|.+.+.+..
T Consensus 322 ~~l~~~l~~~~ 332 (342)
T 1lnz_A 322 FEVANQLENTP 332 (342)
T ss_dssp HHHHHHHTSCC
T ss_pred HHHHHHHhhCc
Confidence 99999887654
No 131
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.88 E-value=1.5e-22 Score=151.10 Aligned_cols=132 Identities=20% Similarity=0.277 Sum_probs=108.5
Q ss_pred ccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCC----------hhHHHHHHHHHHHHH
Q 030225 22 ESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITS----------MDSFERAKKWVQELQ 91 (181)
Q Consensus 22 ~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~ 91 (181)
.+|+|... ..+.++ .+.+.+||++|++.++..|..++++++++|||||+++ ..++.+...|+..+.
T Consensus 178 ~~T~Gi~~--~~~~~~--~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~ 253 (353)
T 1cip_A 178 VKTTGIVE--THFTFK--DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSIC 253 (353)
T ss_dssp CCCCSEEE--EEEEET--TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHH
T ss_pred CceeceEE--EEEeeC--CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHH
Confidence 45666543 334444 5688999999999999999999999999999999998 567999999999887
Q ss_pred HhC-CCCceEEEEEeCCCCcccc---------------cCCHHHHHHHHH-----------HcCCeEEEEecCCCCCHHH
Q 030225 92 RQG-NPNLIMFLVANKVDLEEKR---------------KVKNEEGELYAQ-----------ENGLSFLETSAKSAHNVNE 144 (181)
Q Consensus 92 ~~~-~~~~p~ivi~nK~D~~~~~---------------~~~~~~~~~~~~-----------~~~~~~~~~Sa~~~~gi~~ 144 (181)
... ..+.|+++++||+|+...+ .+..+++..++. .+++.++++||+++.||++
T Consensus 254 ~~~~~~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~ 333 (353)
T 1cip_A 254 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQF 333 (353)
T ss_dssp TCGGGTTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHH
T ss_pred cCccccCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHH
Confidence 742 3679999999999985432 366788888886 3567899999999999999
Q ss_pred HHHHHHHHHHhhC
Q 030225 145 LFYEIAKRLAEVN 157 (181)
Q Consensus 145 ~~~~l~~~~~~~~ 157 (181)
+|+++.+.+.+.+
T Consensus 334 vF~~v~~~i~~~~ 346 (353)
T 1cip_A 334 VFDAVTDVIIKNN 346 (353)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988764
No 132
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.88 E-value=1.6e-23 Score=159.52 Aligned_cols=147 Identities=18% Similarity=0.182 Sum_probs=104.9
Q ss_pred CCCchhHHHHHHhhCCCC-CccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhcc-------chhhccCCcEEEEEE
Q 030225 1 MGTGKTSLVLRFVKGQFF-DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSL-------APMYYRGAAAAVVVY 72 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-------~~~~~~~~d~~i~v~ 72 (181)
+|+|||||+++|++..+. ....+.++.+.....+...+.. .+.+|||||+..+..+ +..++..+|++|+|+
T Consensus 43 ~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~-~l~liDTpG~~d~~~l~~~~~~~~~~~l~~aD~vllVv 121 (423)
T 3qq5_A 43 RNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIG-PVTLVDTPGLDDVGELGRLRVEKARRVFYRADCGILVT 121 (423)
T ss_dssp CSTTTTTTTTSSCC-------------CCCCEEEEEETTTE-EEEEEECSSTTCCCTTCCCCHHHHHHHHTSCSEEEEEC
T ss_pred CCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCC-eEEEEECcCCCcccchhHHHHHHHHHHHhcCCEEEEEE
Confidence 589999999999988763 2223344444445555555542 7889999999876554 345788999999999
Q ss_pred ECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHH
Q 030225 73 DITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKR 152 (181)
Q Consensus 73 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~ 152 (181)
|++..+ ....|+..+... +.|+++|+||+|+...... +....+.+.++++++++||++|.|++++|++|.+.
T Consensus 122 D~~~~~---~~~~~l~~l~~~---~~piIvV~NK~Dl~~~~~~--~~~~~l~~~~g~~v~~vSAktg~gI~eL~~~L~~~ 193 (423)
T 3qq5_A 122 DSAPTP---YEDDVVNLFKEM---EIPFVVVVNKIDVLGEKAE--ELKGLYESRYEAKVLLVSALQKKGFDDIGKTISEI 193 (423)
T ss_dssp SSSCCH---HHHHHHHHHHHT---TCCEEEECCCCTTTTCCCT--HHHHHSSCCTTCCCCCCSSCCTTSTTTHHHHHHHH
T ss_pred eCCChH---HHHHHHHHHHhc---CCCEEEEEeCcCCCCccHH--HHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 984332 335666666554 6899999999999765543 55566666778999999999999999999999998
Q ss_pred HHhh
Q 030225 153 LAEV 156 (181)
Q Consensus 153 ~~~~ 156 (181)
+.+.
T Consensus 194 l~~~ 197 (423)
T 3qq5_A 194 LPGD 197 (423)
T ss_dssp SCCC
T ss_pred hhhh
Confidence 8544
No 133
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.87 E-value=2.9e-21 Score=147.39 Aligned_cols=153 Identities=16% Similarity=0.148 Sum_probs=95.9
Q ss_pred CCCchhHHHHHHhhC---CCCCcccc--ceeeeEEEEEEEE-------------C--C----eEEEEEEEeCCChhhhhc
Q 030225 1 MGTGKTSLVLRFVKG---QFFDFQES--TIGAAFFTQVLSL-------------N--E----VTIKFDIWDTAGQERYHS 56 (181)
Q Consensus 1 ~~~GKttLl~~l~~~---~~~~~~~~--t~~~~~~~~~~~~-------------~--~----~~~~~~i~D~~G~~~~~~ 56 (181)
+++|||||+++|.+. .+..+..+ |+...+....+.. + + ....+.+||+||++.|..
T Consensus 17 ~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiDtPGh~~f~~ 96 (408)
T 1s0u_A 17 VDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFVDSPGHETLMA 96 (408)
T ss_dssp TTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEEECSSHHHHHH
T ss_pred CCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEEECCCHHHHHH
Confidence 589999999999854 33333334 4443443333221 1 1 137899999999999988
Q ss_pred cchhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccc--CCHHHHHHHHHH---cCCeE
Q 030225 57 LAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRK--VKNEEGELYAQE---NGLSF 131 (181)
Q Consensus 57 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~--~~~~~~~~~~~~---~~~~~ 131 (181)
.+...+..+|++|+|+|++++........++..+... ...|+++++||+|+.+... ...++...+++. .++++
T Consensus 97 ~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l--~~~~iivv~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~ 174 (408)
T 1s0u_A 97 TMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEIL--GIDKIIIVQNKIDLVDEKQAEENYEQIKEFVKGTIAENAPI 174 (408)
T ss_dssp HHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT--TCCCEEEEEECTTSSCTTTTTTHHHHHHHHHTTSTTTTCCE
T ss_pred HHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHc--CCCeEEEEEEccCCCCHHHHHHHHHHHHHHHhhcCCCCCeE
Confidence 8777888999999999999642122222333333332 2357999999999976433 233455566554 35789
Q ss_pred EEEecCCCCCHHHHHHHHHHHHHh
Q 030225 132 LETSAKSAHNVNELFYEIAKRLAE 155 (181)
Q Consensus 132 ~~~Sa~~~~gi~~~~~~l~~~~~~ 155 (181)
+++||++|+|+++++++|.+.+..
T Consensus 175 i~vSA~~g~gi~~L~~~l~~~i~~ 198 (408)
T 1s0u_A 175 IPISAHHEANIDVLLKAIQDFIPT 198 (408)
T ss_dssp EEC------CHHHHHHHHHHHSCC
T ss_pred EEeeCCCCCCHHHHHHHHHHhCCC
Confidence 999999999999999999886653
No 134
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.87 E-value=8.8e-22 Score=151.55 Aligned_cols=146 Identities=21% Similarity=0.177 Sum_probs=96.2
Q ss_pred CCCchhHHHHHHhhCCCC-CccccceeeeEEEEEEEECCeEEEEEEEeCCChhh---------hhccchhhccCCcEEEE
Q 030225 1 MGTGKTSLVLRFVKGQFF-DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER---------YHSLAPMYYRGAAAAVV 70 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~---------~~~~~~~~~~~~d~~i~ 70 (181)
||||||||+|+|++.... ....+.++.++....+..++. .+.+|||||... +...+..+++++|++++
T Consensus 10 pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ad~il~ 87 (439)
T 1mky_A 10 PNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGK--TFKLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLF 87 (439)
T ss_dssp TTSSHHHHHHHHHC--------------CCSEEEEEETTE--EEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEE
T ss_pred CCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCe--EEEEEECCCccccccchHHHHHHHHHHHHHHhCCEEEE
Confidence 799999999999987743 222244444444555556665 578999999653 33446678999999999
Q ss_pred EEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHH-HHHHHHcCC-eEEEEecCCCCCHHHHHHH
Q 030225 71 VYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEG-ELYAQENGL-SFLETSAKSAHNVNELFYE 148 (181)
Q Consensus 71 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~-~~~~~~~~~-~~~~~Sa~~~~gi~~~~~~ 148 (181)
|+|++++.+... .++..+... .++|+++++||+|+.+.. ..+. ..+. ..++ .++++||++|.|+.+++++
T Consensus 88 V~D~~~~~~~~d--~~i~~~l~~--~~~p~ilv~NK~D~~~~~---~~~~~~~~~-~lg~~~~~~iSA~~g~gv~~L~~~ 159 (439)
T 1mky_A 88 VVDGKRGITKED--ESLADFLRK--STVDTILVANKAENLREF---EREVKPELY-SLGFGEPIPVSAEHNINLDTMLET 159 (439)
T ss_dssp EEETTTCCCHHH--HHHHHHHHH--HTCCEEEEEESCCSHHHH---HHHTHHHHG-GGSSCSCEECBTTTTBSHHHHHHH
T ss_pred EEECCCCCCHHH--HHHHHHHHH--cCCCEEEEEeCCCCcccc---HHHHHHHHH-hcCCCCEEEEeccCCCCHHHHHHH
Confidence 999987544322 222222222 268999999999985421 1222 3333 4566 7899999999999999999
Q ss_pred HHHHHHhh
Q 030225 149 IAKRLAEV 156 (181)
Q Consensus 149 l~~~~~~~ 156 (181)
+.+.+.+.
T Consensus 160 i~~~l~~~ 167 (439)
T 1mky_A 160 IIKKLEEK 167 (439)
T ss_dssp HHHHHHHT
T ss_pred HHHhcccc
Confidence 99988754
No 135
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.87 E-value=1.4e-22 Score=148.76 Aligned_cols=149 Identities=16% Similarity=0.134 Sum_probs=100.1
Q ss_pred CCCchhHHHHHHhhCCCCCcc-ccceeeeEEEEEEEECCeEEEEEEEeCCChh---------hhhccchhhccCCcEEEE
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQ-ESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE---------RYHSLAPMYYRGAAAAVV 70 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~---------~~~~~~~~~~~~~d~~i~ 70 (181)
||||||||+|+|++..+.... .+.+........+.. ...++.+|||||.. .+......+++.+|++++
T Consensus 17 ~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~--~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~~~D~vl~ 94 (301)
T 1ega_A 17 PNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTE--GAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIF 94 (301)
T ss_dssp SSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEE--TTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEE
T ss_pred CCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEE--CCeeEEEEECcCCCccchhhHHHHHHHHHHHHHhcCCEEEE
Confidence 799999999999998764321 121111111112222 33578899999986 233445677899999999
Q ss_pred EEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCC-eEEEEecCCCCCHHHHHHHH
Q 030225 71 VYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGL-SFLETSAKSAHNVNELFYEI 149 (181)
Q Consensus 71 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~~~~~l 149 (181)
|+|+++ +.....|+...... .+.|.++++||+|+........+....+...+++ .++++||+++.|+++++++|
T Consensus 95 Vvd~~~---~~~~~~~i~~~l~~--~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i 169 (301)
T 1ega_A 95 VVEGTR---WTPDDEMVLNKLRE--GKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIV 169 (301)
T ss_dssp EEETTC---CCHHHHHHHHHHHS--SSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHH
T ss_pred EEeCCC---CCHHHHHHHHHHHh--cCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCCHHHHHHHH
Confidence 999976 33333444333332 4689999999999865222223444555555665 69999999999999999999
Q ss_pred HHHHHhh
Q 030225 150 AKRLAEV 156 (181)
Q Consensus 150 ~~~~~~~ 156 (181)
...+.+.
T Consensus 170 ~~~l~~~ 176 (301)
T 1ega_A 170 RKHLPEA 176 (301)
T ss_dssp HTTCCBC
T ss_pred HHhCCcC
Confidence 8766543
No 136
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.87 E-value=3e-21 Score=144.84 Aligned_cols=156 Identities=18% Similarity=0.081 Sum_probs=103.3
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChh---------hhhccchhhccCCcEEEEE
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE---------RYHSLAPMYYRGAAAAVVV 71 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~---------~~~~~~~~~~~~~d~~i~v 71 (181)
||||||||+|+|.+........+..+.+.....+.+++. .+.+|||+|.. .+...+. .+..+|++++|
T Consensus 188 ~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~--~v~l~DT~G~i~~lp~~lve~f~~tl~-~~~~aD~il~V 264 (364)
T 2qtf_A 188 TNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNR--KIMLVDTVGFIRGIPPQIVDAFFVTLS-EAKYSDALILV 264 (364)
T ss_dssp TTSSHHHHHHHHHCC-----------CCSCEEEEEETTE--EEEEEECCCBCSSCCGGGHHHHHHHHH-GGGGSSEEEEE
T ss_pred CCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCE--EEEEEeCCCchhcCCHHHHHHHHHHHH-HHHhCCEEEEE
Confidence 799999999999987764333333333444556667774 57899999962 2333332 47889999999
Q ss_pred EECCChh--HHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccC-CHHHHHHHHHHc---CCeEEEEecCCCCCHHHH
Q 030225 72 YDITSMD--SFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKV-KNEEGELYAQEN---GLSFLETSAKSAHNVNEL 145 (181)
Q Consensus 72 ~d~~~~~--s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~-~~~~~~~~~~~~---~~~~~~~Sa~~~~gi~~~ 145 (181)
+|++++. ....+..|...+......+.|+++|+||+|+...... ....+..++... +.+++++||+++.|++++
T Consensus 265 vD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~SA~~g~gi~~L 344 (364)
T 2qtf_A 265 IDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPISALKRTNLELL 344 (364)
T ss_dssp EETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEECBTTTTBSHHHH
T ss_pred EECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEEECCCCcCHHHH
Confidence 9999876 5555666666666555567899999999998542210 011222233444 346899999999999999
Q ss_pred HHHHHHHHHhhCCC
Q 030225 146 FYEIAKRLAEVNPS 159 (181)
Q Consensus 146 ~~~l~~~~~~~~~~ 159 (181)
+++|.+.+.....+
T Consensus 345 ~~~I~~~l~~~~~~ 358 (364)
T 2qtf_A 345 RDKIYQLATQLSLE 358 (364)
T ss_dssp HHHHHHHHHHHC--
T ss_pred HHHHHHHhcccCCC
Confidence 99999988776543
No 137
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.87 E-value=4.1e-22 Score=154.21 Aligned_cols=144 Identities=22% Similarity=0.204 Sum_probs=104.0
Q ss_pred CCCchhHHHHHHhhCCCC-CccccceeeeEEEEEEEECCeEEEEEEEeCCChh-hhhc--------cchhhccCCcEEEE
Q 030225 1 MGTGKTSLVLRFVKGQFF-DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE-RYHS--------LAPMYYRGAAAAVV 70 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~-~~~~--------~~~~~~~~~d~~i~ 70 (181)
||||||||+|+|.+.... ....+.++.+.....+.+++. .+.+|||||.. .+.. ....+++.+|++|+
T Consensus 252 pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~--~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~~aD~vl~ 329 (482)
T 1xzp_A 252 PNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGI--LFRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLF 329 (482)
T ss_dssp HHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTE--EEEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEE
T ss_pred CCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCe--EEEEEECCCccccchhhHHHHHHHHHHHHhhcccEEEE
Confidence 689999999999987532 233344455555556666654 57899999987 5432 13457889999999
Q ss_pred EEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHH
Q 030225 71 VYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIA 150 (181)
Q Consensus 71 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~ 150 (181)
|+|++++.+++... +++.+ .++|+++|+||+|+... ...++...+. ..+++++++||++|+|+++++++|.
T Consensus 330 VvD~s~~~s~~~~~-il~~l-----~~~piivV~NK~DL~~~--~~~~~~~~~~-~~~~~~i~iSAktg~Gi~eL~~~l~ 400 (482)
T 1xzp_A 330 VLDASSPLDEEDRK-ILERI-----KNKRYLVVINKVDVVEK--INEEEIKNKL-GTDRHMVKISALKGEGLEKLEESIY 400 (482)
T ss_dssp EEETTSCCCHHHHH-HHHHH-----TTSSEEEEEEECSSCCC--CCHHHHHHHH-TCSTTEEEEEGGGTCCHHHHHHHHH
T ss_pred EecCCCCCCHHHHH-HHHHh-----cCCCEEEEEECcccccc--cCHHHHHHHh-cCCCcEEEEECCCCCCHHHHHHHHH
Confidence 99999887765532 22332 36799999999999642 3334444443 2447899999999999999999999
Q ss_pred HHHHh
Q 030225 151 KRLAE 155 (181)
Q Consensus 151 ~~~~~ 155 (181)
+.+..
T Consensus 401 ~~~~~ 405 (482)
T 1xzp_A 401 RETQE 405 (482)
T ss_dssp HHTHH
T ss_pred HHHhh
Confidence 97654
No 138
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.87 E-value=3.5e-21 Score=146.70 Aligned_cols=153 Identities=15% Similarity=0.101 Sum_probs=106.2
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEE-------EE---------E---ECCeEEEEEEEeCCChhhhhccchhh
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQ-------VL---------S---LNEVTIKFDIWDTAGQERYHSLAPMY 61 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~-------~~---------~---~~~~~~~~~i~D~~G~~~~~~~~~~~ 61 (181)
+|+|||||+++|.+....... .....+.... .+ . ......++.+|||||++.|...+..+
T Consensus 17 ~~~GKSTLi~~L~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPGh~~~~~~~~~~ 95 (403)
T 3sjy_A 17 VDHGKTTLVQAITGIWTSKKL-GYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSG 95 (403)
T ss_dssp TTSSHHHHHHHHHSCCCCSSS-EEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCCCGGGHHHHHHH
T ss_pred CCCCHHHHHHHHhCccccccc-CccccceeeccccccccceecccccccccccccccccceEEEEECCCcHHHHHHHHHH
Confidence 689999999999975433211 0000000000 00 0 01223689999999999999999999
Q ss_pred ccCCcEEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccC--CHHHHHHHHHHc---CCeEEEEec
Q 030225 62 YRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKV--KNEEGELYAQEN---GLSFLETSA 136 (181)
Q Consensus 62 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~--~~~~~~~~~~~~---~~~~~~~Sa 136 (181)
+..+|++|+|+|++++.++.....|+..+.... .+|+++++||+|+.+.... ..++...+.... +++++++||
T Consensus 96 ~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~--~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~vSA 173 (403)
T 3sjy_A 96 AALMDGAILVVAANEPFPQPQTREHFVALGIIG--VKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTWAENVPIIPVSA 173 (403)
T ss_dssp HTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTTTTCCEEECBT
T ss_pred HhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcC--CCCEEEEEECccccchHHHHHHHHHHHHHHHhhCCCCCEEEEEEC
Confidence 999999999999998776777778877766553 3589999999998653321 112222333222 578999999
Q ss_pred CCCCCHHHHHHHHHHHHHhh
Q 030225 137 KSAHNVNELFYEIAKRLAEV 156 (181)
Q Consensus 137 ~~~~gi~~~~~~l~~~~~~~ 156 (181)
++|+|+++++++|.+.+...
T Consensus 174 ~~g~gi~~L~~~l~~~l~~~ 193 (403)
T 3sjy_A 174 LHKINIDSLIEGIEEYIKTP 193 (403)
T ss_dssp TTTBSHHHHHHHHHHHSCCC
T ss_pred CCCcChHHHHHHHHHhCCCC
Confidence 99999999999998876543
No 139
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.87 E-value=5.7e-22 Score=146.10 Aligned_cols=144 Identities=15% Similarity=0.212 Sum_probs=115.2
Q ss_pred HHHhhCCCCCc-------cccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECC-------
Q 030225 10 LRFVKGQFFDF-------QESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDIT------- 75 (181)
Q Consensus 10 ~~l~~~~~~~~-------~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~------- 75 (181)
.|+....+.++ +.+|+|.. ...+.++ .+.+.+||++|++.++..|..|+++++++|||||++
T Consensus 133 ~Ri~~~~Y~PT~~Dilr~r~~TiGi~--~~~~~~~--~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~ 208 (327)
T 3ohm_A 133 DRVADPSYLPTQQDVLRVRVPTTGII--EYPFDLQ--SVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLV 208 (327)
T ss_dssp HHHHSTTCCCCHHHHTTCCCCCCSEE--EEEEEET--TEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCS
T ss_pred HHHhccCCCccccchhcccCceeeEE--EEEEEee--ceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECcccccccc
Confidence 45566677665 56788843 3334444 478899999999999999999999999999999665
Q ss_pred ---ChhHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccc----------------cCCHHHHHHHHH----------
Q 030225 76 ---SMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKR----------------KVKNEEGELYAQ---------- 125 (181)
Q Consensus 76 ---~~~s~~~~~~~~~~~~~~~-~~~~p~ivi~nK~D~~~~~----------------~~~~~~~~~~~~---------- 125 (181)
+.+++.+...|+..+.... ..+.|+++++||+|+.+.+ +...+++..++.
T Consensus 209 d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~ 288 (327)
T 3ohm_A 209 ESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDS 288 (327)
T ss_dssp SCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTT
T ss_pred ccccHhHHHHHHHHHHHHhhhhccCCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccc
Confidence 6778888888888887642 3679999999999986543 467788888853
Q ss_pred HcCCeEEEEecCCCCCHHHHHHHHHHHHHhhC
Q 030225 126 ENGLSFLETSAKSAHNVNELFYEIAKRLAEVN 157 (181)
Q Consensus 126 ~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~ 157 (181)
..++.++++||+++.||+.+|+.+.+.+.+++
T Consensus 289 ~~~i~~~~TsA~d~~nV~~vF~~v~~~Il~~~ 320 (327)
T 3ohm_A 289 DKIIYSHFTCATDTENIRFVFAAVKDTILQLN 320 (327)
T ss_dssp TSCEEEEECCTTCHHHHHHHHHHHHHHHHHTT
T ss_pred cCCcEEEEEEeecCHHHHHHHHHHHHHHHHHh
Confidence 35678899999999999999999999998764
No 140
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.87 E-value=1.1e-22 Score=156.53 Aligned_cols=145 Identities=17% Similarity=0.140 Sum_probs=95.3
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChh--------hhhccchhhccCCcEEEEEE
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE--------RYHSLAPMYYRGAAAAVVVY 72 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~--------~~~~~~~~~~~~~d~~i~v~ 72 (181)
||||||||+|+|.+..... ..++.|+++.............+.+|||||.. .+...+..+++++|++|+|+
T Consensus 12 ~nvGKStL~n~l~~~~~~~-v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vv 90 (436)
T 2hjg_A 12 PNVGKSTIFNRIAGERISI-VEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMV 90 (436)
T ss_dssp TTSSHHHHHHHHEEEECC------------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHHCSEEEEEE
T ss_pred CCCCHHHHHHHHhCCCcee-ecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEE
Confidence 7999999999999876643 34566776666666666666688999999985 56666778899999999999
Q ss_pred ECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCC-eEEEEecCCCCCHHHHHHHHHH
Q 030225 73 DITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGL-SFLETSAKSAHNVNELFYEIAK 151 (181)
Q Consensus 73 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~~~~~l~~ 151 (181)
|++++.+... .|+..+... .++|+++++||+|+...... ...+. ..++ .++++||++|.|+.++++++.+
T Consensus 91 D~~~~~~~~d--~~~~~~l~~--~~~pvilv~NK~D~~~~~~~----~~~~~-~lg~~~~~~iSA~~g~gv~~L~~~i~~ 161 (436)
T 2hjg_A 91 NGREGVTAAD--EEVAKILYR--TKKPVVLAVNKLDNTEMRAN----IYDFY-SLGFGEPYPISGTHGLGLGDLLDAVAE 161 (436)
T ss_dssp ETTTCSCHHH--HHHHHHHTT--CCSCEEEEEECCCC-----C----CCSSG-GGSSCCCEECBTTTTBTHHHHHHHHHH
T ss_pred eCCCCCCHHH--HHHHHHHHH--cCCCEEEEEECccCccchhh----HHHHH-HcCCCCeEEEeCcCCCChHHHHHHHHH
Confidence 9987655433 334443333 57899999999998643211 11122 3455 7899999999999999999998
Q ss_pred HHHh
Q 030225 152 RLAE 155 (181)
Q Consensus 152 ~~~~ 155 (181)
.+.+
T Consensus 162 ~l~~ 165 (436)
T 2hjg_A 162 HFKN 165 (436)
T ss_dssp TGGG
T ss_pred hcCc
Confidence 8764
No 141
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.86 E-value=2.4e-21 Score=153.19 Aligned_cols=149 Identities=17% Similarity=0.180 Sum_probs=102.2
Q ss_pred CCCchhHHHHHHhhCCCCC-------ccc------cceeeeEEEEEEEE-----CCeEEEEEEEeCCChhhhhccchhhc
Q 030225 1 MGTGKTSLVLRFVKGQFFD-------FQE------STIGAAFFTQVLSL-----NEVTIKFDIWDTAGQERYHSLAPMYY 62 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~-------~~~------~t~~~~~~~~~~~~-----~~~~~~~~i~D~~G~~~~~~~~~~~~ 62 (181)
+++|||||+++|+...... ... ...|.++......+ ++..+.+++|||||+..|...+..++
T Consensus 13 ~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~dF~~ev~~~l 92 (599)
T 3cb4_D 13 IDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVDFSYEVSRSL 92 (599)
T ss_dssp C----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGGGHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchHHHHHHHHHH
Confidence 5899999999998632111 010 12233333322222 45578999999999999999999999
Q ss_pred cCCcEEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCC---eEEEEecCCC
Q 030225 63 RGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGL---SFLETSAKSA 139 (181)
Q Consensus 63 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~---~~~~~Sa~~~ 139 (181)
+.+|++|+|+|++++........|..... .+.|+++++||+|+.+.. .......+...+++ .++++||++|
T Consensus 93 ~~aD~aILVVDa~~gv~~qt~~~~~~~~~----~~ipiIvViNKiDl~~a~--~~~v~~ei~~~lg~~~~~vi~vSAktg 166 (599)
T 3cb4_D 93 AACEGALLVVDAGQGVEAQTLANCYTAME----MDLEVVPVLNKIDLPAAD--PERVAEEIEDIVGIDATDAVRCSAKTG 166 (599)
T ss_dssp HHCSEEEEEEETTTCCCTHHHHHHHHHHH----TTCEEEEEEECTTSTTCC--HHHHHHHHHHHTCCCCTTCEEECTTTC
T ss_pred HHCCEEEEEEECCCCCCHHHHHHHHHHHH----CCCCEEEeeeccCccccc--HHHHHHHHHHHhCCCcceEEEeecccC
Confidence 99999999999998777666666655442 367999999999996532 22334555566676 4899999999
Q ss_pred CCHHHHHHHHHHHHHh
Q 030225 140 HNVNELFYEIAKRLAE 155 (181)
Q Consensus 140 ~gi~~~~~~l~~~~~~ 155 (181)
.|+++++++|.+.+..
T Consensus 167 ~GI~~Ll~~I~~~lp~ 182 (599)
T 3cb4_D 167 VGVQDVLERLVRDIPP 182 (599)
T ss_dssp TTHHHHHHHHHHHSCC
T ss_pred CCchhHHHHHhhcCCC
Confidence 9999999999887654
No 142
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.86 E-value=2.8e-21 Score=149.98 Aligned_cols=145 Identities=20% Similarity=0.150 Sum_probs=100.2
Q ss_pred CCCchhHHHHHHhhCC-------CCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEE
Q 030225 1 MGTGKTSLVLRFVKGQ-------FFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYD 73 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~-------~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 73 (181)
+++|||||+++|.+.. ...+..+.++.+.....+..++ ..+.+||+||++.|...+...+..+|++|+|+|
T Consensus 28 ~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~iiDtPGh~~~~~~~~~~~~~aD~~ilVvd 105 (482)
T 1wb1_A 28 IDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVSAADIIDLALIVVD 105 (482)
T ss_dssp TTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHHHTTSCCEEEEEEE
T ss_pred CCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC--EEEEEEECCChHHHHHHHHHHHhhCCEEEEEEe
Confidence 5899999999999876 2233333333333333344444 578899999999998888889999999999999
Q ss_pred CCC---hhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccc--cCCHHHHHHHHHHc----CCeEEEEecCCCCCHHH
Q 030225 74 ITS---MDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR--KVKNEEGELYAQEN----GLSFLETSAKSAHNVNE 144 (181)
Q Consensus 74 ~~~---~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~--~~~~~~~~~~~~~~----~~~~~~~Sa~~~~gi~~ 144 (181)
+++ +.+.+ ++..+.. .+.|.++++||+|+.+.. +...++...++... +++++++||++|+|+++
T Consensus 106 a~~g~~~qt~e----~l~~~~~---~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~vSA~~g~gI~~ 178 (482)
T 1wb1_A 106 AKEGPKTQTGE----HMLILDH---FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDE 178 (482)
T ss_dssp TTTCSCHHHHH----HHHHHHH---TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTTTCTTHHH
T ss_pred cCCCccHHHHH----HHHHHHH---cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEEEEECcCCCCHHH
Confidence 987 33333 2333322 357889999999996522 22233445555555 57899999999999999
Q ss_pred HHHHHHHHHH
Q 030225 145 LFYEIAKRLA 154 (181)
Q Consensus 145 ~~~~l~~~~~ 154 (181)
++++|.+.+.
T Consensus 179 L~~~L~~~i~ 188 (482)
T 1wb1_A 179 LKNLIITTLN 188 (482)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhhc
Confidence 9999999876
No 143
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.86 E-value=5e-22 Score=153.07 Aligned_cols=145 Identities=17% Similarity=0.148 Sum_probs=95.4
Q ss_pred CCCchhHHHHHHhhCCCC-CccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccc--------hhhccCCcEEEEE
Q 030225 1 MGTGKTSLVLRFVKGQFF-DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLA--------PMYYRGAAAAVVV 71 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~--------~~~~~~~d~~i~v 71 (181)
||||||||+|+|++.... ....++++.++....+.+++. .+.+|||||...+.... ..++.++|++++|
T Consensus 233 ~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~--~v~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~V 310 (462)
T 3geh_A 233 PNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGI--PVQVLDTAGIRETSDQVEKIGVERSRQAANTADLVLLT 310 (462)
T ss_dssp TTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTE--EEEECC--------------------CCCCSCSEEEEE
T ss_pred CCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCE--EEEEEECCccccchhHHHHHHHHHHhhhhhcCCEEEEE
Confidence 799999999999986543 223344444444445556664 56899999986554332 3367899999999
Q ss_pred EECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHH
Q 030225 72 YDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAK 151 (181)
Q Consensus 72 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 151 (181)
+|++++.+... ..|+..+ ...|+++|+||+|+....... ....+. .+.+++++||++|.|+++++++|.+
T Consensus 311 vD~s~~~~~~~-~~i~~~l-----~~~piivV~NK~Dl~~~~~~~--~~~~~~--~~~~~i~iSAktg~Gi~eL~~~i~~ 380 (462)
T 3geh_A 311 IDAATGWTTGD-QEIYEQV-----KHRPLILVMNKIDLVEKQLIT--SLEYPE--NITQIVHTAAAQKQGIDSLETAILE 380 (462)
T ss_dssp EETTTCSCHHH-HHHHHHH-----TTSCEEEEEECTTSSCGGGST--TCCCCT--TCCCEEEEBTTTTBSHHHHHHHHHH
T ss_pred eccCCCCCHHH-HHHHHhc-----cCCcEEEEEECCCCCcchhhH--HHHHhc--cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 99998765543 4444444 236999999999997654432 111111 3578999999999999999999999
Q ss_pred HHHhhC
Q 030225 152 RLAEVN 157 (181)
Q Consensus 152 ~~~~~~ 157 (181)
.+....
T Consensus 381 ~~~~~~ 386 (462)
T 3geh_A 381 IVQTGK 386 (462)
T ss_dssp HHTTSS
T ss_pred HHhccC
Confidence 887654
No 144
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.86 E-value=2.2e-21 Score=145.24 Aligned_cols=145 Identities=13% Similarity=0.165 Sum_probs=106.9
Q ss_pred HHHHhhCCCCCc-------cccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCC-----
Q 030225 9 VLRFVKGQFFDF-------QESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITS----- 76 (181)
Q Consensus 9 l~~l~~~~~~~~-------~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----- 76 (181)
+.|+....+.++ ..+|+|+.. ..+.++ .+.+.+||++|++.++..|..++++++++|||||+++
T Consensus 166 ~~ri~~~~Y~PT~~Dil~~r~~T~Gi~~--~~~~~~--~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l 241 (362)
T 1zcb_A 166 LDKLGVPDYIPSQQDILLARRPTKGIHE--YDFEIK--NVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVL 241 (362)
T ss_dssp HHHHTSTTCCCCHHHHHHCCCCCSSEEE--EEEEET--TEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEE
T ss_pred HHHHhcCCCCCChhhhhhccCCccceEE--EEeeeC--CeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccc
Confidence 455565555554 335666543 334444 4688999999999999999999999999999999999
Q ss_pred -----hhHHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCcccc----------------cCCHHHHHHHHH---------
Q 030225 77 -----MDSFERAKKWVQELQRQ-GNPNLIMFLVANKVDLEEKR----------------KVKNEEGELYAQ--------- 125 (181)
Q Consensus 77 -----~~s~~~~~~~~~~~~~~-~~~~~p~ivi~nK~D~~~~~----------------~~~~~~~~~~~~--------- 125 (181)
..++.+...|+..+... ...+.|+++++||+|+.+.+ .+..+++..++.
T Consensus 242 ~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~ 321 (362)
T 1zcb_A 242 MEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRD 321 (362)
T ss_dssp TTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSS
T ss_pred cccccccHHHHHHHHHHHHhcchhhCCCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcc
Confidence 77999999999998764 23679999999999986432 266777777762
Q ss_pred --HcCCeEEEEecCCCCCHHHHHHHHHHHHHhhC
Q 030225 126 --ENGLSFLETSAKSAHNVNELFYEIAKRLAEVN 157 (181)
Q Consensus 126 --~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~ 157 (181)
..++.++++||++++||+++|+++.+.+.+.+
T Consensus 322 ~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~~~~ 355 (362)
T 1zcb_A 322 QQQRPLYHHFTTAINTENIRLVFRDVKDTILHDN 355 (362)
T ss_dssp CC--CCEEEECCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCceEEEEEecCCchhHHHHHHHHHHHHHHHH
Confidence 34678999999999999999999999887653
No 145
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.86 E-value=6.6e-21 Score=145.51 Aligned_cols=152 Identities=16% Similarity=0.149 Sum_probs=101.7
Q ss_pred CCCchhHHHHHHhhC---CCCCcccc--ceeeeEEEEEEEE-------------C--C----eEEEEEEEeCCChhhhhc
Q 030225 1 MGTGKTSLVLRFVKG---QFFDFQES--TIGAAFFTQVLSL-------------N--E----VTIKFDIWDTAGQERYHS 56 (181)
Q Consensus 1 ~~~GKttLl~~l~~~---~~~~~~~~--t~~~~~~~~~~~~-------------~--~----~~~~~~i~D~~G~~~~~~ 56 (181)
+++|||||+++|.+. .+..+..+ |+...+....+.. + + ...++.|||+||++.|..
T Consensus 19 ~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiDtPGh~~f~~ 98 (410)
T 1kk1_A 19 VDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEALMT 98 (410)
T ss_dssp TTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEEECSSHHHHHH
T ss_pred CCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEEEECCChHHHHH
Confidence 589999999999854 23334334 4443443333221 1 1 137899999999999888
Q ss_pred cchhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccc--CCHHHHHHHHHH---cCCeE
Q 030225 57 LAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRK--VKNEEGELYAQE---NGLSF 131 (181)
Q Consensus 57 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~--~~~~~~~~~~~~---~~~~~ 131 (181)
.....+..+|++|+|+|++++.........+..+... ..+|+++++||+|+.+... ...++...++.. .++++
T Consensus 99 ~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~--~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~ 176 (410)
T 1kk1_A 99 TMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII--GQKNIIIAQNKIELVDKEKALENYRQIKEFIEGTVAENAPI 176 (410)
T ss_dssp HHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH--TCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTTTTCCE
T ss_pred HHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHc--CCCcEEEEEECccCCCHHHHHHHHHHHHHHHHhcCcCCCeE
Confidence 7777788899999999999642122222233333333 2357999999999865332 122334445443 35789
Q ss_pred EEEecCCCCCHHHHHHHHHHHHH
Q 030225 132 LETSAKSAHNVNELFYEIAKRLA 154 (181)
Q Consensus 132 ~~~Sa~~~~gi~~~~~~l~~~~~ 154 (181)
+++||++|+|+++++++|.+.+.
T Consensus 177 i~vSA~~g~gi~~L~~~l~~~~~ 199 (410)
T 1kk1_A 177 IPISALHGANIDVLVKAIEDFIP 199 (410)
T ss_dssp EECBTTTTBSHHHHHHHHHHHSC
T ss_pred EEeeCCCCCCHHHHHHHHHHhCC
Confidence 99999999999999999987664
No 146
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.86 E-value=5.3e-21 Score=151.02 Aligned_cols=149 Identities=17% Similarity=0.236 Sum_probs=103.9
Q ss_pred CCCchhHHHHHHhhCC--CCC-----cccc------ceeeeEE----EEEEEE-CCeEEEEEEEeCCChhhhhccchhhc
Q 030225 1 MGTGKTSLVLRFVKGQ--FFD-----FQES------TIGAAFF----TQVLSL-NEVTIKFDIWDTAGQERYHSLAPMYY 62 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~--~~~-----~~~~------t~~~~~~----~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~ 62 (181)
+++|||||+++|+... ... .... ..|.++. ...+.. ++..+.+++|||||+..|...+..++
T Consensus 15 ~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~dF~~ev~r~l 94 (600)
T 2ywe_A 15 VDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVDFSYEVSRAL 94 (600)
T ss_dssp --CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSGGGHHHHHHHH
T ss_pred CCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcHhHHHHHHHHH
Confidence 5899999999998632 110 0001 1122221 111221 45578999999999999998888999
Q ss_pred cCCcEEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCC---eEEEEecCCC
Q 030225 63 RGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGL---SFLETSAKSA 139 (181)
Q Consensus 63 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~---~~~~~Sa~~~ 139 (181)
+.+|++|+|+|++++........|..... .+.|+++++||+|+.+.. ......++....++ .++++||++|
T Consensus 95 ~~aD~aILVVDa~~gv~~qt~~~~~~a~~----~~ipiIvviNKiDl~~a~--~~~v~~el~~~lg~~~~~vi~vSAktg 168 (600)
T 2ywe_A 95 AACEGALLLIDASQGIEAQTVANFWKAVE----QDLVIIPVINKIDLPSAD--VDRVKKQIEEVLGLDPEEAILASAKEG 168 (600)
T ss_dssp HTCSEEEEEEETTTBCCHHHHHHHHHHHH----TTCEEEEEEECTTSTTCC--HHHHHHHHHHTSCCCGGGCEECBTTTT
T ss_pred HhCCEEEEEEECCCCccHHHHHHHHHHHH----CCCCEEEEEeccCccccC--HHHHHHHHHHhhCCCcccEEEEEeecC
Confidence 99999999999999877776666655442 468999999999986532 22334455555566 4899999999
Q ss_pred CCHHHHHHHHHHHHHh
Q 030225 140 HNVNELFYEIAKRLAE 155 (181)
Q Consensus 140 ~gi~~~~~~l~~~~~~ 155 (181)
.|+++++++|++.+..
T Consensus 169 ~GI~~Lle~I~~~lp~ 184 (600)
T 2ywe_A 169 IGIEEILEAIVNRIPP 184 (600)
T ss_dssp BSHHHHHHHHHHHSCC
T ss_pred CCchHHHHHHHHhccc
Confidence 9999999999887654
No 147
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.85 E-value=3e-23 Score=161.84 Aligned_cols=152 Identities=17% Similarity=0.167 Sum_probs=107.2
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+|+|||||+++|.+..+.....++++.++....+..++ ..++.||||||++.|..++..+++.+|++|+|+|++++...
T Consensus 13 ~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~-g~~i~~iDTPGhe~f~~~~~~~~~~aD~vILVVDa~dg~~~ 91 (537)
T 3izy_P 13 VDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPS-GEKITFLDTPGHAAFSAMRARGTQVTDIVILVVAADDGVMK 91 (537)
T ss_dssp TTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSC-SSCCBCEECSSSCCTTTSBBSSSBSBSSCEEECBSSSCCCH
T ss_pred CCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCC-CCEEEEEECCChHHHHHHHHHHHccCCEEEEEEECCCCccH
Confidence 68999999999998777665556665554444433322 23688999999999999999999999999999999985544
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEEeCCCCccccc-CCHHHHHHH---HHHc--CCeEEEEecCCCCCHHHHHHHHHHHHH
Q 030225 81 ERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRK-VKNEEGELY---AQEN--GLSFLETSAKSAHNVNELFYEIAKRLA 154 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~-~~~~~~~~~---~~~~--~~~~~~~Sa~~~~gi~~~~~~l~~~~~ 154 (181)
.... ++..+. ..+.|+++++||+|+.+... ....+...+ +..+ .++++++||++|.|+++++++|...+.
T Consensus 92 qt~e-~l~~~~---~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~eLle~I~~l~~ 167 (537)
T 3izy_P 92 QTVE-SIQHAK---DAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMMALAEATIALAE 167 (537)
T ss_dssp HHHH-HHHHHH---TTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSHHHHHHHHHHHT
T ss_pred HHHH-HHHHHH---HcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCchhHHHHHHHhhh
Confidence 3322 233332 24679999999999864321 111122211 1112 247999999999999999999998776
Q ss_pred hhC
Q 030225 155 EVN 157 (181)
Q Consensus 155 ~~~ 157 (181)
...
T Consensus 168 ~~~ 170 (537)
T 3izy_P 168 MLE 170 (537)
T ss_dssp TCC
T ss_pred ccc
Confidence 443
No 148
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.85 E-value=3.8e-21 Score=143.49 Aligned_cols=118 Identities=18% Similarity=0.220 Sum_probs=95.6
Q ss_pred eEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECC----------ChhHHHHHHHHHHHHHHhC-CCCceEEEEEeCC
Q 030225 39 VTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDIT----------SMDSFERAKKWVQELQRQG-NPNLIMFLVANKV 107 (181)
Q Consensus 39 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~-~~~~p~ivi~nK~ 107 (181)
..+.+.+||++|++.++.+|..++++++++|+|||++ +..++++...|+..+.... ..+.|+++++||+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 6789999999999999999999999999999999998 7889999999999887642 3679999999999
Q ss_pred CCccccc--C-------------------CHHHHHHHHHH----------------cCCeEEEEecCCCCCHHHHHHHHH
Q 030225 108 DLEEKRK--V-------------------KNEEGELYAQE----------------NGLSFLETSAKSAHNVNELFYEIA 150 (181)
Q Consensus 108 D~~~~~~--~-------------------~~~~~~~~~~~----------------~~~~~~~~Sa~~~~gi~~~~~~l~ 150 (181)
|+.+.+. + ..+++..+++. ..+.++++||++++||+++|+++.
T Consensus 261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~ 340 (354)
T 2xtz_A 261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD 340 (354)
T ss_dssp HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence 9854321 1 14566666443 124568999999999999999999
Q ss_pred HHHHhh
Q 030225 151 KRLAEV 156 (181)
Q Consensus 151 ~~~~~~ 156 (181)
+.+.+.
T Consensus 341 ~~I~~~ 346 (354)
T 2xtz_A 341 ETLRRR 346 (354)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988764
No 149
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.85 E-value=1.2e-20 Score=144.96 Aligned_cols=142 Identities=15% Similarity=0.142 Sum_probs=94.7
Q ss_pred CCCchhHHHHHHhhCCCC-------------------------------CccccceeeeEEEEEEEECCeEEEEEEEeCC
Q 030225 1 MGTGKTSLVLRFVKGQFF-------------------------------DFQESTIGAAFFTQVLSLNEVTIKFDIWDTA 49 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~-------------------------------~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~ 49 (181)
+|+|||||+++|+..... .+..+.++.+. ....+.....++.|||||
T Consensus 26 ~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~--~~~~~~~~~~~~~iiDTP 103 (439)
T 3j2k_7 26 VDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEV--GRAYFETEKKHFTILDAP 103 (439)
T ss_pred CCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEE--eEEEEecCCeEEEEEECC
Confidence 689999999999653211 11112333333 333344445689999999
Q ss_pred ChhhhhccchhhccCCcEEEEEEECCChhH---HH---HHHHHHHHHHHhCCCCce-EEEEEeCCCCccc------ccCC
Q 030225 50 GQERYHSLAPMYYRGAAAAVVVYDITSMDS---FE---RAKKWVQELQRQGNPNLI-MFLVANKVDLEEK------RKVK 116 (181)
Q Consensus 50 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~p-~ivi~nK~D~~~~------~~~~ 116 (181)
|++.|...+...+..+|++|+|+|++++.. |+ .....+..+.. .+.| +++++||+|+... .+..
T Consensus 104 Gh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~---~~v~~iIvviNK~Dl~~~~~~~~~~~~i 180 (439)
T 3j2k_7 104 GHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT---AGVKHLIVLINKMDDPTVNWSNERYEEC 180 (439)
T ss_pred ChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH---cCCCeEEEEeecCCCcccchHHHHHHHH
Confidence 999999998899999999999999987532 11 22333333333 2455 8999999998431 1112
Q ss_pred HHHHHHHHHHcC------CeEEEEecCCCCCHHHHHH
Q 030225 117 NEEGELYAQENG------LSFLETSAKSAHNVNELFY 147 (181)
Q Consensus 117 ~~~~~~~~~~~~------~~~~~~Sa~~~~gi~~~~~ 147 (181)
.++...+++..+ ++++++||++|.|+.++++
T Consensus 181 ~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 181 KEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred HHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 233444555544 4799999999999999766
No 150
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.85 E-value=1.3e-20 Score=142.16 Aligned_cols=130 Identities=15% Similarity=0.194 Sum_probs=103.2
Q ss_pred cceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCC----------hhHHHHHHHHHHHHHH
Q 030225 23 STIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITS----------MDSFERAKKWVQELQR 92 (181)
Q Consensus 23 ~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~ 92 (181)
+|+|+.. ..+.+++ +.+.+||++|++.++..|..++++++++|||||+++ ..+|.+...|+..+..
T Consensus 203 ~TiGi~~--~~~~~~~--v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~ 278 (402)
T 1azs_C 203 LTSGIFE--TKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWN 278 (402)
T ss_dssp CCCSEEE--EEEEETT--EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHT
T ss_pred ceeeeEE--EEeecCC--ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHh
Confidence 3556543 3444554 788999999999999999999999999999999999 8899999999999877
Q ss_pred hC-CCCceEEEEEeCCCCccccc---C---------------------------CHHHHHHHHH-----H--------cC
Q 030225 93 QG-NPNLIMFLVANKVDLEEKRK---V---------------------------KNEEGELYAQ-----E--------NG 128 (181)
Q Consensus 93 ~~-~~~~p~ivi~nK~D~~~~~~---~---------------------------~~~~~~~~~~-----~--------~~ 128 (181)
.. ..+.|++|++||+|+...+. + ..+++..|++ . ++
T Consensus 279 ~~~~~~~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~ 358 (402)
T 1azs_C 279 NRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHY 358 (402)
T ss_dssp CTTCSSCCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSC
T ss_pred cccCCCCeEEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcc
Confidence 53 46899999999999854322 1 1345555532 1 24
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHHHHhh
Q 030225 129 LSFLETSAKSAHNVNELFYEIAKRLAEV 156 (181)
Q Consensus 129 ~~~~~~Sa~~~~gi~~~~~~l~~~~~~~ 156 (181)
+.++++||++++||+++|+++.+.+.+.
T Consensus 359 ~~~~~TSA~d~~nV~~vF~~v~~~I~~~ 386 (402)
T 1azs_C 359 CYPHFTCAVDTENIRRVFNDCRDIIQRM 386 (402)
T ss_dssp EEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEEEeecCcCHHHHHHHHHHHHHHH
Confidence 6788999999999999999999988765
No 151
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.85 E-value=3.5e-21 Score=149.73 Aligned_cols=142 Identities=18% Similarity=0.161 Sum_probs=90.9
Q ss_pred CCCchhHHHHHHhhCCCC--Ccc---------------------------ccceeeeEEEEEEEECCeEEEEEEEeCCCh
Q 030225 1 MGTGKTSLVLRFVKGQFF--DFQ---------------------------ESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 51 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~--~~~---------------------------~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~ 51 (181)
+|+|||||+++|+..... ..+ ....|+++......++....++.||||||+
T Consensus 42 ~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDTPG~ 121 (483)
T 3p26_A 42 VDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRANFTIVDAPGH 121 (483)
T ss_dssp GGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSSCEEEEECCCCC
T ss_pred CCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCCceEEEEECCCc
Confidence 589999999999865211 000 011133333333444455568899999999
Q ss_pred hhhhccchhhccCCcEEEEEEECCChhHHH------HHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHH----HH
Q 030225 52 ERYHSLAPMYYRGAAAAVVVYDITSMDSFE------RAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEE----GE 121 (181)
Q Consensus 52 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~------~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~----~~ 121 (181)
+.|...+..++..+|++|+|+|++++.++. .....+..+... ..+|+++++||+|+.+..+...++ ..
T Consensus 122 ~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~--~~~~iIvviNK~Dl~~~~~~~~~~i~~~~~ 199 (483)
T 3p26_A 122 RDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL--GIHNLIIAMNKMDNVDWSQQRFEEIKSKLL 199 (483)
T ss_dssp GGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT--TCCCEEEEEECGGGGTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc--CCCcEEEEEECcCcccchHHHHHHHHHHHH
Confidence 999999999999999999999999865432 222222233222 235799999999986533322222 23
Q ss_pred HHHHHc-----CCeEEEEecCCCCCHHH
Q 030225 122 LYAQEN-----GLSFLETSAKSAHNVNE 144 (181)
Q Consensus 122 ~~~~~~-----~~~~~~~Sa~~~~gi~~ 144 (181)
.++... +++++++||++|+|+.+
T Consensus 200 ~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 200 PYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp HHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred HHHHHcCCCcccceEEEEeeecCCCccc
Confidence 333333 35799999999999874
No 152
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.84 E-value=2.7e-21 Score=139.32 Aligned_cols=153 Identities=18% Similarity=0.136 Sum_probs=97.2
Q ss_pred CCCchhHHHHHHhhCCC-CCccccc-eeeeEEEEEEEECCeEEEEEEEeCCChhhhhccc-----------hhhccCCcE
Q 030225 1 MGTGKTSLVLRFVKGQF-FDFQEST-IGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLA-----------PMYYRGAAA 67 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~-~~~~~~t-~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~-----------~~~~~~~d~ 67 (181)
||||||||+++|++... ...+.++ ++.+........++ ..+.||||||...+.... ..+++.+|+
T Consensus 31 ~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~~~d~ 108 (260)
T 2xtp_A 31 TGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN--REIVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHV 108 (260)
T ss_dssp TTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT--EEEEEEECCGGGGSSCCCHHHHHHHHHHHHHHTTCCSE
T ss_pred CCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC--CEEEEEECcCCCCCCCCHHHHHHHHHHHHHhcCCCCcE
Confidence 69999999999998773 3333333 33333334444454 468899999986543222 236789999
Q ss_pred EEEEEECCChhHH-HHHHHHHHHHHHhCCCCceEEEEEe-CCCCcccccCCH-------HHHHHHHHHcCCe---E--EE
Q 030225 68 AVVVYDITSMDSF-ERAKKWVQELQRQGNPNLIMFLVAN-KVDLEEKRKVKN-------EEGELYAQENGLS---F--LE 133 (181)
Q Consensus 68 ~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~p~ivi~n-K~D~~~~~~~~~-------~~~~~~~~~~~~~---~--~~ 133 (181)
+++|+|+++.... ..+..|+..+.... ...|.++++| |+|+.+. .... .++..++...+.. + ++
T Consensus 109 il~V~d~~~~~~~~~~~~~~l~~~~~~~-~~~~~i~vv~nK~Dl~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (260)
T 2xtp_A 109 LLLVTQLGRYTSQDQQAAQRVKEIFGED-AMGHTIVLFTHKEDLNGG-SLMDYMHDSDNKALSKLVAACGGRICAFNNRA 186 (260)
T ss_dssp EEEEEETTCCCHHHHHHHHHHHHHHCGG-GGGGEEEEEECGGGGTTC-CHHHHHHHCCCHHHHHHHHHTTTCEEECCTTC
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhCch-hhccEEEEEEcccccCCc-cHHHHHHhcchHHHHHHHHHhCCeEEEecCcc
Confidence 9999999862222 22233333332211 1345555555 9998642 1111 2244456655532 2 78
Q ss_pred EecCCCCCHHHHHHHHHHHHHhhC
Q 030225 134 TSAKSAHNVNELFYEIAKRLAEVN 157 (181)
Q Consensus 134 ~Sa~~~~gi~~~~~~l~~~~~~~~ 157 (181)
+||+++.|++++|++|.+.+.+..
T Consensus 187 ~SA~~~~gv~~l~~~i~~~~~~~~ 210 (260)
T 2xtp_A 187 EGSNQDDQVKELMDCIEDLLMEKN 210 (260)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cccccHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999999988765
No 153
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.84 E-value=2.3e-20 Score=132.89 Aligned_cols=152 Identities=15% Similarity=0.130 Sum_probs=99.0
Q ss_pred CCCchhHHHHHHhhCCCCCcccc--ceeeeEEEEEEEECCeEEEEEEEeCCCh-----------hhhhccchhhccCCcE
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQES--TIGAAFFTQVLSLNEVTIKFDIWDTAGQ-----------ERYHSLAPMYYRGAAA 67 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~~~i~D~~G~-----------~~~~~~~~~~~~~~d~ 67 (181)
+|||||||+++|++..+.....+ +++..........++. .+.+|||||. ..+...+..++.++|+
T Consensus 38 ~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (239)
T 3lxx_A 38 TGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKET--ELVVVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHA 115 (239)
T ss_dssp TTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTE--EEEEEECCSCC-----CHHHHHHHHHHHHHTTTCCSE
T ss_pred CCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCc--eEEEEECCCccCCCCCHHHHHHHHHHHHHhcCCCCcE
Confidence 69999999999999887665545 3333444444555554 6789999993 3444445556778999
Q ss_pred EEEEEECCChhHHHHHHHHHHHHHHhC--CCCceEEEEEeCCCCcccccCC------HHHHHHHHHHcCCeEEEEecCCC
Q 030225 68 AVVVYDITSMDSFERAKKWVQELQRQG--NPNLIMFLVANKVDLEEKRKVK------NEEGELYAQENGLSFLETSAKSA 139 (181)
Q Consensus 68 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ivi~nK~D~~~~~~~~------~~~~~~~~~~~~~~~~~~Sa~~~ 139 (181)
+|+|+|+++.... ...|+..+.... ....|+++++||+|+.+...+. .+....+++..+..++.++...+
T Consensus 116 ~l~v~d~~~~~~~--~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~~~~~~~~ 193 (239)
T 3lxx_A 116 LLLVVPLGRYTEE--EHKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFGDRYCALNNKAT 193 (239)
T ss_dssp EEEEEETTCCSSH--HHHHHHHHHHHHHHHHGGGEEEEEECGGGC------------CHHHHHHHHHHSSSEEECCTTCC
T ss_pred EEEEeeCCCCCHH--HHHHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHcCCEEEEEECCCC
Confidence 9999998764331 122333332211 0245899999999986543332 23567778888888888877654
Q ss_pred -----CCHHHHHHHHHHHHHhh
Q 030225 140 -----HNVNELFYEIAKRLAEV 156 (181)
Q Consensus 140 -----~gi~~~~~~l~~~~~~~ 156 (181)
.++.++|+.+...+.+.
T Consensus 194 ~~~~~~~v~~ll~~i~~~~~~~ 215 (239)
T 3lxx_A 194 GAEQEAQRAQLLGLIQRVVREN 215 (239)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccccHHHHHHHHHHHHHHHHHc
Confidence 68999999998887664
No 154
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.84 E-value=3.3e-21 Score=145.01 Aligned_cols=140 Identities=9% Similarity=0.031 Sum_probs=99.7
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+++|||||+++|+ ....|+. ... ..+.....++.+|||||+++|.......++.+|++|+|+| + ...+
T Consensus 30 ~d~GKSTL~~~L~------~~giTi~--~~~--~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~-~g~~ 97 (370)
T 2elf_A 30 EKSGRTSLAANLG------KKGTSSD--ITM--YNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-P-QGLD 97 (370)
T ss_dssp TTSSHHHHHHTTS------EEEEESS--SEE--EEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-T-TCCC
T ss_pred CCCCHHHHHHHHH------hCCEEEE--eeE--EEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-C-CCCc
Confidence 6899999999998 1112222 222 2344444578999999999998877888899999999999 4 3445
Q ss_pred HHHHHHHHHHHHhCCCCceE-EEEEe-CCCCcccccCC--HHHHHHHHHHcC---CeEEE--EecCC---CCCHHHHHHH
Q 030225 81 ERAKKWVQELQRQGNPNLIM-FLVAN-KVDLEEKRKVK--NEEGELYAQENG---LSFLE--TSAKS---AHNVNELFYE 148 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~p~-ivi~n-K~D~~~~~~~~--~~~~~~~~~~~~---~~~~~--~Sa~~---~~gi~~~~~~ 148 (181)
.....++..+... +.|. ++++| |+|+ +..... .++...+++..+ +++++ +||++ ++|++++++.
T Consensus 98 ~qt~e~~~~~~~~---~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~gi~~L~~~ 173 (370)
T 2elf_A 98 AHTGECIIALDLL---GFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEGVDELKAR 173 (370)
T ss_dssp HHHHHHHHHHHHT---TCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTTHHHHHHH
T ss_pred HHHHHHHHHHHHc---CCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCCHHHHHHH
Confidence 5566666665544 4566 88888 9998 432221 134445554443 68999 99999 9999999999
Q ss_pred HHHHHHhh
Q 030225 149 IAKRLAEV 156 (181)
Q Consensus 149 l~~~~~~~ 156 (181)
|.+.+...
T Consensus 174 l~~~~~~~ 181 (370)
T 2elf_A 174 INEVAEKI 181 (370)
T ss_dssp HHHHHHHH
T ss_pred HHhhcccc
Confidence 99887643
No 155
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.84 E-value=1.3e-21 Score=143.62 Aligned_cols=134 Identities=16% Similarity=0.132 Sum_probs=108.8
Q ss_pred HHHHHHhhCCCC-CccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChh-HHHHHH
Q 030225 7 SLVLRFVKGQFF-DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMD-SFERAK 84 (181)
Q Consensus 7 tLl~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~ 84 (181)
+|+.+++.+.+. ..+.||+|..+. ..+..++ ++.+||+ ++.++.+++.+++++|++|+|||++++. ++..+.
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~ 105 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID 105 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEE-EECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH
T ss_pred cEEEEEEcccccccCCCCCCccEEE-EEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH
Confidence 577788888888 788899995544 3322222 6789999 8889999999999999999999999987 688899
Q ss_pred HHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcC--CeEEEEecCCCCCHHHHHHHHHH
Q 030225 85 KWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENG--LSFLETSAKSAHNVNELFYEIAK 151 (181)
Q Consensus 85 ~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~~~~~l~~ 151 (181)
.|+..+.. .++|+++|+||+|+.+.+.+ +++..+++.++ ++++++||++|.|++++|+++..
T Consensus 106 ~~l~~~~~---~~~piilv~NK~DL~~~~~v--~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~g 169 (301)
T 1u0l_A 106 KFLVLAEK---NELETVMVINKMDLYDEDDL--RKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKG 169 (301)
T ss_dssp HHHHHHHH---TTCEEEEEECCGGGCCHHHH--HHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHSS
T ss_pred HHHHHHHH---CCCCEEEEEeHHHcCCchhH--HHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhcC
Confidence 99987754 47899999999999654432 44666777777 89999999999999999998753
No 156
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.84 E-value=2.2e-20 Score=147.73 Aligned_cols=149 Identities=22% Similarity=0.197 Sum_probs=98.8
Q ss_pred CCCchhHHHHHHhhCCCCCccc----cceeeeEEEEEE------------EECCeEEEEEEEeCCChhhhhccchhhccC
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQE----STIGAAFFTQVL------------SLNEVTIKFDIWDTAGQERYHSLAPMYYRG 64 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~----~t~~~~~~~~~~------------~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 64 (181)
+|+|||||+++|++..+..... ++++..+..... ..+.....+.||||||+..|..++..+++.
T Consensus 14 ~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F~~~~~r~~~~ 93 (594)
T 1g7s_A 14 VDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTTLRKRGGAL 93 (594)
T ss_dssp TTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTTSBCSSSBS
T ss_pred CCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHHHHHHHHHHhh
Confidence 5899999999999765433221 223322211100 000111258899999999999999999999
Q ss_pred CcEEEEEEECCC---hhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCC-------------HH----------
Q 030225 65 AAAAVVVYDITS---MDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVK-------------NE---------- 118 (181)
Q Consensus 65 ~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~-------------~~---------- 118 (181)
+|++|+|+|+++ +.+++.+. .+.. .+.|+++++||+|+....... ..
T Consensus 94 aD~aILVvDa~~Gv~~qT~e~l~----~l~~---~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~v~~~~~e~i~ 166 (594)
T 1g7s_A 94 ADLAILIVDINEGFKPQTQEALN----ILRM---YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDTKVY 166 (594)
T ss_dssp CSEEEEEEETTTCCCHHHHHHHH----HHHH---TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCccHhHHHHHH----HHHH---cCCeEEEEecccccccccccccCCchHHHHHHhHHHHHHHHHHHHH
Confidence 999999999998 55655433 2222 468999999999986422110 00
Q ss_pred HHHHHHHHcC---------------CeEEEEecCCCCCHHHHHHHHHHHHHhh
Q 030225 119 EGELYAQENG---------------LSFLETSAKSAHNVNELFYEIAKRLAEV 156 (181)
Q Consensus 119 ~~~~~~~~~~---------------~~~~~~Sa~~~~gi~~~~~~l~~~~~~~ 156 (181)
+......+.+ ++++++||++|.|+++++++|...+...
T Consensus 167 ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~~ 219 (594)
T 1g7s_A 167 ELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQY 219 (594)
T ss_dssp HHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcccc
Confidence 1111122222 3799999999999999999999877643
No 157
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.84 E-value=6.2e-21 Score=141.07 Aligned_cols=142 Identities=15% Similarity=0.217 Sum_probs=111.6
Q ss_pred HHHhhCCCCCc-------cccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECC-------
Q 030225 10 LRFVKGQFFDF-------QESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDIT------- 75 (181)
Q Consensus 10 ~~l~~~~~~~~-------~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~------- 75 (181)
.|+....+.++ +.+|+|+.. ..+.+ ..+.+.+||++|++.++..|..|+++++++|||||++
T Consensus 127 ~Ri~~~~Y~PT~~Dil~~~~~TiGi~~--~~~~~--~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~ 202 (340)
T 4fid_A 127 KRIAMEDYVPTEEDLIHNRTKTTGIHE--YDFVV--KDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLY 202 (340)
T ss_dssp HHHSSTTCCCCHHHHHHSCCCCCSCEE--EEEES--SSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC
T ss_pred HHHhcccCCccccceeecccceeeeEE--EEEEe--eeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccc
Confidence 45556666666 667788543 23333 4578899999999999999999999999999999998
Q ss_pred ---ChhHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccc---------------cCCHHHHHHHHHHc---------
Q 030225 76 ---SMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKR---------------KVKNEEGELYAQEN--------- 127 (181)
Q Consensus 76 ---~~~s~~~~~~~~~~~~~~~-~~~~p~ivi~nK~D~~~~~---------------~~~~~~~~~~~~~~--------- 127 (181)
+..++.+...|+..+.... ..+.|+++++||+|+.+.+ ....+++..++...
T Consensus 203 e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~ 282 (340)
T 4fid_A 203 EDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEE 282 (340)
T ss_dssp --CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEE
T ss_pred cccccchHHHHHHHHHHHhhhhccCCCeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhh
Confidence 6788999999998887743 3689999999999985321 12456665555432
Q ss_pred ------------------CCeEEEEecCCCCCHHHHHHHHHHHHHh
Q 030225 128 ------------------GLSFLETSAKSAHNVNELFYEIAKRLAE 155 (181)
Q Consensus 128 ------------------~~~~~~~Sa~~~~gi~~~~~~l~~~~~~ 155 (181)
++.++++||+++.+|+.+|+.+.+.+.+
T Consensus 283 ~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~vF~~v~~~Il~ 328 (340)
T 4fid_A 283 MNISGADGTANIEGAVNEKVYTNPTNATDGSNIKRVFMLAVDVIMK 328 (340)
T ss_dssp SCC--------------CEEEEEEECTTCHHHHHHHHHHHHHHHHH
T ss_pred hhccccccccccccccCcceEEEEEEeeCcHHHHHHHHHHHHHHHH
Confidence 3678999999999999999999999887
No 158
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.84 E-value=1.8e-21 Score=149.52 Aligned_cols=157 Identities=17% Similarity=0.183 Sum_probs=100.8
Q ss_pred CCCchhHHHHHHhhC--CCCCccc---------------------------cceeeeEEEEEEEECCeEEEEEEEeCCCh
Q 030225 1 MGTGKTSLVLRFVKG--QFFDFQE---------------------------STIGAAFFTQVLSLNEVTIKFDIWDTAGQ 51 (181)
Q Consensus 1 ~~~GKttLl~~l~~~--~~~~~~~---------------------------~t~~~~~~~~~~~~~~~~~~~~i~D~~G~ 51 (181)
+|+|||||+++|+.. .+..... ...|.++......++....++.+|||||+
T Consensus 15 ~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~~~~~iiDtpG~ 94 (435)
T 1jny_A 15 VDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKYFFTIIDAPGH 94 (435)
T ss_dssp TTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSCEEEECCCSSS
T ss_pred CCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCCeEEEEEECCCc
Confidence 589999999999864 2221100 01122232333334445567999999999
Q ss_pred hhhhccchhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhC-----CCCceEEEEEeCCCCcccc------cCCHHHH
Q 030225 52 ERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQG-----NPNLIMFLVANKVDLEEKR------KVKNEEG 120 (181)
Q Consensus 52 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-----~~~~p~ivi~nK~D~~~~~------~~~~~~~ 120 (181)
..|...+..++..+|++|+|+|+++ .+|+....|..+..++. ..-+|+++++||+|+.+.. +...++.
T Consensus 95 ~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~~~~~i 173 (435)
T 1jny_A 95 RDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDEKRYKEIVDQV 173 (435)
T ss_dssp TTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCccccHHHHHHHHHHH
Confidence 9999988999999999999999998 67775443322222210 1234689999999986521 1223455
Q ss_pred HHHHHHcC-----CeEEEEecCCCCCHHHHHH--------HHHHHHHhhCC
Q 030225 121 ELYAQENG-----LSFLETSAKSAHNVNELFY--------EIAKRLAEVNP 158 (181)
Q Consensus 121 ~~~~~~~~-----~~~~~~Sa~~~~gi~~~~~--------~l~~~~~~~~~ 158 (181)
..+++..+ ++++++||++|+|+.++++ .|.+.+....+
T Consensus 174 ~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~~~~~~~g~~Ll~~l~~~~~ 224 (435)
T 1jny_A 174 SKFMRSYGFNTNKVRFVPVVAPSGDNITHKSENMKWYNGPTLEEYLDQLEL 224 (435)
T ss_dssp HHHHHHTTCCCTTCEEEECBTTTTBTTTBCCSSCTTCCSCCHHHHHTTCCC
T ss_pred HHHHHHcCCCcCCceEEEeecccCccccccccccccccchhHHHHHhccCC
Confidence 66666665 6799999999999986654 45555544333
No 159
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.84 E-value=1.1e-21 Score=147.29 Aligned_cols=154 Identities=15% Similarity=0.232 Sum_probs=85.2
Q ss_pred CCCchhHHHHHHhhCCCC-Ccc--------ccceeeeEEEEEEEECCeEEEEEEEeCCCh-------hhhhccch-----
Q 030225 1 MGTGKTSLVLRFVKGQFF-DFQ--------ESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ-------ERYHSLAP----- 59 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~-~~~--------~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~-------~~~~~~~~----- 59 (181)
+|+|||||+++|++.... ..+ .++++.......+..++..+.+.+|||||. +.+..++.
T Consensus 46 ~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~~~i~~~i~~~ 125 (361)
T 2qag_A 46 SGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQ 125 (361)
T ss_dssp TTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------CCTHHHHHHH
T ss_pred CCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHHHHHHHHHHHH
Confidence 699999999998765432 222 145555544444555666788999999998 55666654
Q ss_pred --hhccCCcE-----------EEEEEECCC-hhHHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCcccccCCH--HHHHH
Q 030225 60 --MYYRGAAA-----------AVVVYDITS-MDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEEKRKVKN--EEGEL 122 (181)
Q Consensus 60 --~~~~~~d~-----------~i~v~d~~~-~~s~~~~~-~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~--~~~~~ 122 (181)
.+++++++ .+++|++++ ..++..+. .|+..+ ..++|+++|+||+|+....++.. .++..
T Consensus 126 ~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l----~~~~piIlV~NK~Dl~~~~ev~~~k~~i~~ 201 (361)
T 2qag_A 126 FERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI----HNKVNIVPVIAKADTLTLKERERLKKRILD 201 (361)
T ss_dssp HHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT----CS-SCEEEEEECCSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh----ccCCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45543322 234444443 34444443 333333 35789999999999976554433 45666
Q ss_pred HHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHhhCCC
Q 030225 123 YAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVNPS 159 (181)
Q Consensus 123 ~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~~~ 159 (181)
++..++++++++||+++.| .+.|.++.+.+.+..|.
T Consensus 202 ~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~~ip~ 237 (361)
T 2qag_A 202 EIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKASIPF 237 (361)
T ss_dssp HTTCC-CCSCCCC----------CHHHHHHHHHTCSC
T ss_pred HHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHhcCCC
Confidence 7777789999999999999 99999999999887664
No 160
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.83 E-value=8e-20 Score=140.63 Aligned_cols=151 Identities=18% Similarity=0.144 Sum_probs=97.2
Q ss_pred CCCchhHHHHHHhhCCCC-CccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccc------------hhhccCCcE
Q 030225 1 MGTGKTSLVLRFVKGQFF-DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLA------------PMYYRGAAA 67 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~------------~~~~~~~d~ 67 (181)
||||||||+|+|++.... ....+.++.+.....+.+++. .+.+||++|...+.... ..+++.+|+
T Consensus 189 ~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~ 266 (439)
T 1mky_A 189 PNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADV 266 (439)
T ss_dssp TTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCHHHHHHHHHCSE
T ss_pred CCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHHHHHHHHHhhCCE
Confidence 799999999999987642 112233333333344556665 56799999974332211 235678999
Q ss_pred EEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHH-HHHH----cCCeEEEEecCCCCCH
Q 030225 68 AVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGEL-YAQE----NGLSFLETSAKSAHNV 142 (181)
Q Consensus 68 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~-~~~~----~~~~~~~~Sa~~~~gi 142 (181)
+++|+|++++.+.... .+...+.. .+.|+++++||+|+.+......++... +... .+++++++||++|.|+
T Consensus 267 vllv~d~~~~~~~~~~-~i~~~l~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv 342 (439)
T 1mky_A 267 VVIVLDATQGITRQDQ-RMAGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNI 342 (439)
T ss_dssp EEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEECBTTTTBSH
T ss_pred EEEEEeCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEEEEECCCCCCH
Confidence 9999999876554432 22233322 468999999999987644433333322 2222 2578999999999999
Q ss_pred HHHHHHHHHHHHhhC
Q 030225 143 NELFYEIAKRLAEVN 157 (181)
Q Consensus 143 ~~~~~~l~~~~~~~~ 157 (181)
+++|+.+.+.+.+..
T Consensus 343 ~~l~~~i~~~~~~~~ 357 (439)
T 1mky_A 343 DRMIDAMNLAYASYT 357 (439)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhc
Confidence 999999998776653
No 161
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.83 E-value=6.6e-21 Score=149.03 Aligned_cols=107 Identities=16% Similarity=0.081 Sum_probs=73.3
Q ss_pred CCCchhHHHHHHhhCCCCC-----------------cccc---ceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchh
Q 030225 1 MGTGKTSLVLRFVKGQFFD-----------------FQES---TIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPM 60 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~-----------------~~~~---t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~ 60 (181)
||+|||||+++|+...... .+.+ ..|.++......+....+.+.||||||+..|...+..
T Consensus 22 ~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG~~df~~~~~~ 101 (528)
T 3tr5_A 22 PDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPGHADFTEDTYR 101 (528)
T ss_dssp TTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCCSTTCCHHHHH
T ss_pred CCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCCchhHHHHHHH
Confidence 6999999999997211100 0000 0122222223333334567899999999999999999
Q ss_pred hccCCcEEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcc
Q 030225 61 YYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEE 111 (181)
Q Consensus 61 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~ 111 (181)
+++.+|++|+|+|++++........| ..+.. .++|+++++||+|+..
T Consensus 102 ~l~~aD~allVvDa~~g~~~~t~~~~-~~~~~---~~iPiivviNK~Dl~~ 148 (528)
T 3tr5_A 102 TLTAVDSALMVIDAAKGVEPRTIKLM-EVCRL---RHTPIMTFINKMDRDT 148 (528)
T ss_dssp GGGGCSEEEEEEETTTCSCHHHHHHH-HHHHT---TTCCEEEEEECTTSCC
T ss_pred HHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHH---cCCCEEEEEeCCCCcc
Confidence 99999999999999987665554444 33332 4689999999999853
No 162
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.83 E-value=7.8e-21 Score=146.04 Aligned_cols=108 Identities=19% Similarity=0.149 Sum_probs=78.7
Q ss_pred ECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccc-
Q 030225 36 LNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRK- 114 (181)
Q Consensus 36 ~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~- 114 (181)
+.....++.+|||||++.|...+..++..+|++|+|+|++++.. .....++..+... .-+|+++++||+|+.+..+
T Consensus 99 ~~~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~-~qt~~~l~~~~~~--~~~~iIvviNK~Dl~~~~~~ 175 (434)
T 1zun_B 99 FSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQ-TQTRRHSYIASLL--GIKHIVVAINKMDLNGFDER 175 (434)
T ss_dssp EECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSC-HHHHHHHHHHHHT--TCCEEEEEEECTTTTTSCHH
T ss_pred eecCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc--CCCeEEEEEEcCcCCcccHH
Confidence 33344678999999999998888888999999999999987542 3344455444433 2346999999999965211
Q ss_pred ---CCHHHHHHHHHHcC-----CeEEEEecCCCCCHHHHH
Q 030225 115 ---VKNEEGELYAQENG-----LSFLETSAKSAHNVNELF 146 (181)
Q Consensus 115 ---~~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~~~ 146 (181)
....+...+++..+ ++++++||++|.|+.+++
T Consensus 176 ~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~ 215 (434)
T 1zun_B 176 VFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKS 215 (434)
T ss_dssp HHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCC
T ss_pred HHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCccccc
Confidence 12234556666677 679999999999998853
No 163
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.83 E-value=2.2e-20 Score=133.55 Aligned_cols=156 Identities=13% Similarity=0.097 Sum_probs=96.8
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEE--EEEEECCeEEEEEEEeCCCh--------hhhhccchhh----ccCCc
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFT--QVLSLNEVTIKFDIWDTAGQ--------ERYHSLAPMY----YRGAA 66 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~--~~~~~~~~~~~~~i~D~~G~--------~~~~~~~~~~----~~~~d 66 (181)
||||||||+|+|++........++.+++... .....++ ..+.+|||||. +.+......+ ...+|
T Consensus 30 ~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~~i~~~~~~~~~~~d 107 (247)
T 3lxw_A 30 TGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDK--CHVEVVDTPDIFSSQVSKTDPGCEERGHCYLLSAPGPH 107 (247)
T ss_dssp TTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETT--EEEEEEECCSCSSTTHHHHSTTSHHHHHHHHHHTTCCS
T ss_pred CCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECC--cEEEEEECCCCCCCCCCcHHHHHHHHHHHHHhcCCCCC
Confidence 7999999999999988765444443333322 3333444 46789999995 2222222222 38999
Q ss_pred EEEEEEECCChhHH-HHHHHHHHHHHHhCCCCceEEEEEeCCCCccccc------CCHHHHHHHHHHcCCeEEEEecCC-
Q 030225 67 AAVVVYDITSMDSF-ERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRK------VKNEEGELYAQENGLSFLETSAKS- 138 (181)
Q Consensus 67 ~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~------~~~~~~~~~~~~~~~~~~~~Sa~~- 138 (181)
++++|+|+++.... ..+..++..+......+.|+++++||.|+.+... ........+.+..+..++.+++..
T Consensus 108 ~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~~~~g~~~~~~~~~~~ 187 (247)
T 3lxw_A 108 ALLLVTQLGRFTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALRELVAECGGRVCAFDNRAT 187 (247)
T ss_dssp EEEEEEETTBCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHTTTCEEECCTTCC
T ss_pred EEEEEEeCCCCCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCCCCHHHHHhhcccHHHHHHHHHcCCeEEEEeCCCC
Confidence 99999999853221 1223333333222223689999999999854211 111345677777888887776654
Q ss_pred ----CCCHHHHHHHHHHHHHhhCC
Q 030225 139 ----AHNVNELFYEIAKRLAEVNP 158 (181)
Q Consensus 139 ----~~gi~~~~~~l~~~~~~~~~ 158 (181)
+.|+.++++.|.+.+.+..+
T Consensus 188 ~~~~~~~v~~Ll~~i~~~~~~~~~ 211 (247)
T 3lxw_A 188 GREQEAQVEQLLGMVEGLVLEHKG 211 (247)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred ccccHHHHHHHHHHHHHHHHHcCC
Confidence 58999999999998887544
No 164
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.83 E-value=2.2e-21 Score=140.83 Aligned_cols=149 Identities=15% Similarity=0.179 Sum_probs=84.7
Q ss_pred CCCchhHHHHHHhhCCCCCc-c-------ccceeeeEEEEEEEECCeEEEEEEEeCCChh-------hhhccc-------
Q 030225 1 MGTGKTSLVLRFVKGQFFDF-Q-------ESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE-------RYHSLA------- 58 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~-~-------~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~-------~~~~~~------- 58 (181)
||+|||||+|+|++...... + .+|++.+.....+..++..+.+.+|||||.. .+..+.
T Consensus 17 ~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~~i~~~i~~~~ 96 (274)
T 3t5d_A 17 SGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKF 96 (274)
T ss_dssp TTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHHHHHHHHHHHH
Confidence 69999999999887654433 2 4666666666666556666799999999962 122222
Q ss_pred hhhcc-------------CCcEEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccC--CHHHHHHH
Q 030225 59 PMYYR-------------GAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKV--KNEEGELY 123 (181)
Q Consensus 59 ~~~~~-------------~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~--~~~~~~~~ 123 (181)
..++. .+|+++++++.+.......-..++..+.. .+|+++|+||+|+....+. ........
T Consensus 97 ~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~----~~pvi~V~nK~D~~~~~e~~~~~~~i~~~ 172 (274)
T 3t5d_A 97 EDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE----KVNIIPLIAKADTLTPEECQQFKKQIMKE 172 (274)
T ss_dssp HHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT----TSCEEEEESSGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc----cCCEEEEEeccCCCCHHHHHHHHHHHHHH
Confidence 22222 37799999987652222222334444422 7899999999998543222 12234455
Q ss_pred HHHcCCeEEEEecCCCCCHHHHHHHHHHHH
Q 030225 124 AQENGLSFLETSAKSAHNVNELFYEIAKRL 153 (181)
Q Consensus 124 ~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~ 153 (181)
+...+++++.+||.+++|+.+++++|.+.+
T Consensus 173 l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~ 202 (274)
T 3t5d_A 173 IQEHKIKIYEFPETDDEEENKLVKKIKDRL 202 (274)
T ss_dssp HHHTTCCCCCC-----------CHHHHHTC
T ss_pred HHHcCCeEEcCCCCCChhHHHHHHHHhcCC
Confidence 666789999999999999999999987654
No 165
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.83 E-value=2.4e-21 Score=149.76 Aligned_cols=145 Identities=17% Similarity=0.149 Sum_probs=96.8
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCC--------hhhhhccchhhccCCcEEEEEE
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAG--------QERYHSLAPMYYRGAAAAVVVY 72 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G--------~~~~~~~~~~~~~~~d~~i~v~ 72 (181)
||||||||+|+|.+..+.. ...+.|+++.............+.+||||| +..+...+..++.++|++|+|+
T Consensus 32 ~nvGKSTL~n~l~~~~~~~-v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~Vv 110 (456)
T 4dcu_A 32 PNVGKSTIFNRIAGERISI-VEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMV 110 (456)
T ss_dssp SSSSHHHHHHHHEEEEEC------------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHHHHCSEEEEEE
T ss_pred CCCcHHHHHHHHhCCCCcc-cCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhHhhCCEEEEEE
Confidence 7999999999999877643 335667777767777776677899999999 7777778888999999999999
Q ss_pred ECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCC-eEEEEecCCCCCHHHHHHHHHH
Q 030225 73 DITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGL-SFLETSAKSAHNVNELFYEIAK 151 (181)
Q Consensus 73 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~~~~~l~~ 151 (181)
|..++- .....|+..+... .++|+++++||+|+.+... ....+. ..++ .++++||++|.|+.++++++.+
T Consensus 111 D~~~~~--~~~d~~l~~~l~~--~~~pvilV~NK~D~~~~~~----~~~e~~-~lg~~~~~~iSA~~g~gv~~L~~~i~~ 181 (456)
T 4dcu_A 111 NGREGV--TAADEEVAKILYR--TKKPVVLAVNKLDNTEMRA----NIYDFY-SLGFGEPYPISGTHGLGLGDLLDAVAE 181 (456)
T ss_dssp ESSSCS--CHHHHHHHHHHTT--CCSCEEEEEECC-------------CCSG-GGSSSSEEECCTTTCTTHHHHHHHHHT
T ss_pred eCCCCC--ChHHHHHHHHHHH--cCCCEEEEEECccchhhhh----hHHHHH-HcCCCceEEeecccccchHHHHHHHHh
Confidence 987632 2233344444333 5789999999999854211 111111 2333 4679999999999999999988
Q ss_pred HHHh
Q 030225 152 RLAE 155 (181)
Q Consensus 152 ~~~~ 155 (181)
.+..
T Consensus 182 ~l~~ 185 (456)
T 4dcu_A 182 HFKN 185 (456)
T ss_dssp TGGG
T ss_pred hccc
Confidence 7654
No 166
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.82 E-value=5.2e-21 Score=145.89 Aligned_cols=137 Identities=15% Similarity=0.165 Sum_probs=94.9
Q ss_pred CCCchhHHHHHHhhC--------CCCCc-------cccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCC
Q 030225 1 MGTGKTSLVLRFVKG--------QFFDF-------QESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGA 65 (181)
Q Consensus 1 ~~~GKttLl~~l~~~--------~~~~~-------~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 65 (181)
+|+|||||+++|.+. .+... .....|.++......++.....+.+|||||++.|...+..++..+
T Consensus 20 ~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f~~~~~~~~~~a 99 (405)
T 2c78_A 20 VDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQM 99 (405)
T ss_dssp TTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGGHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHHHHHHHHHHHHC
Confidence 689999999999873 11110 001233334334444555556789999999999988888899999
Q ss_pred cEEEEEEECCChhHHHHHHHHHHHHHHhCCCCce-EEEEEeCCCCccccc---CCHHHHHHHHHHcC-----CeEEEEec
Q 030225 66 AAAVVVYDITSMDSFERAKKWVQELQRQGNPNLI-MFLVANKVDLEEKRK---VKNEEGELYAQENG-----LSFLETSA 136 (181)
Q Consensus 66 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivi~nK~D~~~~~~---~~~~~~~~~~~~~~-----~~~~~~Sa 136 (181)
|++|+|+|++++.. .....|+..+... +.| +++++||+|+.+..+ ....+...++...+ ++++++||
T Consensus 100 D~~ilVvda~~g~~-~qt~~~l~~~~~~---~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA 175 (405)
T 2c78_A 100 DGAILVVSAADGPM-PQTREHILLARQV---GVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSA 175 (405)
T ss_dssp SSEEEEEETTTCCC-HHHHHHHHHHHHT---TCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCH
T ss_pred CEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhcccccCCCEEEccH
Confidence 99999999987543 3445566555443 567 889999999864211 11234555666665 68999999
Q ss_pred CCCCC
Q 030225 137 KSAHN 141 (181)
Q Consensus 137 ~~~~g 141 (181)
++|.|
T Consensus 176 ~~g~~ 180 (405)
T 2c78_A 176 LLALE 180 (405)
T ss_dssp HHHHH
T ss_pred HHhhh
Confidence 99987
No 167
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.82 E-value=9.5e-21 Score=130.40 Aligned_cols=105 Identities=16% Similarity=0.192 Sum_probs=79.6
Q ss_pred CCCchhHHHHHHhhCCCCC---ccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccC----CcEEEEEEE
Q 030225 1 MGTGKTSLVLRFVKGQFFD---FQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG----AAAAVVVYD 73 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~----~d~~i~v~d 73 (181)
+|||||||+++|.+..+.. .+.++++. +...+.+.+||+||+..+...+..++.+ +|++|+|||
T Consensus 57 ~g~GKSsll~~l~~~~~~~~~~~~~~~~~~---------~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~d 127 (193)
T 2ged_A 57 QNSGKTSLLTLLTTDSVRPTVVSQEPLSAA---------DYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVD 127 (193)
T ss_dssp TTSSHHHHHHHHHHSSCC---------------------CCCCTTCSEEEETTCCBSSCCHHHHHHHHGGGEEEEEEEEE
T ss_pred CCCCHHHHHHHHhcCCCCcccccCCCceee---------eecCCeEEEEECCCCchHHHHHHHHHHhhcccCCEEEEEEE
Confidence 6899999999999987644 22222222 1244578899999999888888877776 899999999
Q ss_pred CC-ChhHHHHHHHHHHHHHHh----CCCCceEEEEEeCCCCccccc
Q 030225 74 IT-SMDSFERAKKWVQELQRQ----GNPNLIMFLVANKVDLEEKRK 114 (181)
Q Consensus 74 ~~-~~~s~~~~~~~~~~~~~~----~~~~~p~ivi~nK~D~~~~~~ 114 (181)
++ +.+++..+..|+..+... ...+.|+++++||+|+.+...
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 173 (193)
T 2ged_A 128 STVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARP 173 (193)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCC
T ss_pred CCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCC
Confidence 99 899999998888877653 235899999999999965443
No 168
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.82 E-value=2.2e-20 Score=142.08 Aligned_cols=150 Identities=15% Similarity=0.147 Sum_probs=101.4
Q ss_pred CCCchhHHHHHHhhCC-------CCCc-------cccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCc
Q 030225 1 MGTGKTSLVLRFVKGQ-------FFDF-------QESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAA 66 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~-------~~~~-------~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 66 (181)
+++|||||+++|.+.. +... .....|.++......++.....+.+|||||+..|...+..++..+|
T Consensus 12 ~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD 91 (397)
T 1d2e_A 12 VDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVKNMITGTAPLD 91 (397)
T ss_dssp TTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHHHHHHTSSCCS
T ss_pred CCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHHHHHhhHhhCC
Confidence 5899999999998731 1100 0012233333333445555567889999999999888888999999
Q ss_pred EEEEEEECCChhHHHHHHHHHHHHHHhCCCCce-EEEEEeCCCCccccc---CCHHHHHHHHHHcC-----CeEEEEecC
Q 030225 67 AAVVVYDITSMDSFERAKKWVQELQRQGNPNLI-MFLVANKVDLEEKRK---VKNEEGELYAQENG-----LSFLETSAK 137 (181)
Q Consensus 67 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivi~nK~D~~~~~~---~~~~~~~~~~~~~~-----~~~~~~Sa~ 137 (181)
++|+|+|+++....+ ...++..+.. .+.| +++++||+|+.+..+ ....+...+++..+ ++++++||+
T Consensus 92 ~~ilVvda~~g~~~q-t~e~l~~~~~---~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~ 167 (397)
T 1d2e_A 92 GCILVVAANDGPMPQ-TREHLLLARQ---IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEETPIIVGSAL 167 (397)
T ss_dssp EEEEEEETTTCSCHH-HHHHHHHHHH---TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHH
T ss_pred EEEEEEECCCCCCHH-HHHHHHHHHH---cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCcccCcEEEeehh
Confidence 999999999854332 2333344433 3567 688999999864211 12235556676665 589999999
Q ss_pred CCCC----------HHHHHHHHHHHHH
Q 030225 138 SAHN----------VNELFYEIAKRLA 154 (181)
Q Consensus 138 ~~~g----------i~~~~~~l~~~~~ 154 (181)
+|.| +.++++.|.+.+.
T Consensus 168 ~g~n~~~~~~~~g~i~~Ll~~l~~~~p 194 (397)
T 1d2e_A 168 CALEQRDPELGLKSVQKLLDAVDTYIP 194 (397)
T ss_dssp HHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred hcccccCCCccCCcHHHHHHHHHHhCC
Confidence 9764 8888888877554
No 169
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.80 E-value=1.8e-21 Score=150.81 Aligned_cols=146 Identities=21% Similarity=0.219 Sum_probs=97.7
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHH
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF 80 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 80 (181)
+++|||||+++|.+..+.....+.++.+.....+..++ ..+.||||||++.|..++...+..+|++|+|+|++++...
T Consensus 13 vd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~--~~i~~iDTPGhe~f~~~~~~~~~~aD~aILVVda~~g~~~ 90 (501)
T 1zo1_I 13 VDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN--GMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMP 90 (501)
T ss_dssp TTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTS--SCCCEECCCTTTCCTTSBCSSSBSCSSEEEEEETTTBSCT
T ss_pred CCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECC--EEEEEEECCCcHHHHHHHHHHHhhCCEEEEEeecccCccH
Confidence 58999999999998665544334343333222233333 4678999999999999999999999999999999873211
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEEeCCCCcccc--cCCHH--HHHHHHHHcC--CeEEEEecCCCCCHHHHHHHHHHH
Q 030225 81 ERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR--KVKNE--EGELYAQENG--LSFLETSAKSAHNVNELFYEIAKR 152 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~--~~~~~--~~~~~~~~~~--~~~~~~Sa~~~~gi~~~~~~l~~~ 152 (181)
....++..+.. .+.|+++++||+|+.+.. .+... +...+...++ ++++++||++|.|++++|++|...
T Consensus 91 -qT~e~l~~~~~---~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~eLle~I~~~ 164 (501)
T 1zo1_I 91 -QTIEAIQHAKA---AQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTGIDELLDAILLQ 164 (501)
T ss_dssp -TTHHHHHHHHH---TTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTTCTTHHHHTTTT
T ss_pred -HHHHHHHHHHh---cCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeeccCcchhhhhhhhh
Confidence 11122223322 467899999999986421 11100 0000112222 689999999999999999999753
No 170
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.80 E-value=1.3e-20 Score=145.93 Aligned_cols=104 Identities=18% Similarity=0.264 Sum_probs=64.1
Q ss_pred EEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChh---HHHH---HHHHHHHHHHhCCCCce-EEEEEeCCCCccc
Q 030225 40 TIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMD---SFER---AKKWVQELQRQGNPNLI-MFLVANKVDLEEK 112 (181)
Q Consensus 40 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~---~~~~~~~~~~~~~~~~p-~ivi~nK~D~~~~ 112 (181)
..++.||||||++.|..++...+..+|++|+|+|++++. +|+. ....+..... .+.| +++++||+|+...
T Consensus 120 ~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~---~~vp~iivviNK~Dl~~~ 196 (467)
T 1r5b_A 120 HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART---QGINHLVVVINKMDEPSV 196 (467)
T ss_dssp SEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH---TTCSSEEEEEECTTSTTC
T ss_pred CeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHH---cCCCEEEEEEECccCCCc
Confidence 457899999999999998888899999999999999852 3321 2222222222 3566 8999999998531
Q ss_pred c------cCCHHHHHHHHHHc-------CCeEEEEecCCCCCHHHHH
Q 030225 113 R------KVKNEEGELYAQEN-------GLSFLETSAKSAHNVNELF 146 (181)
Q Consensus 113 ~------~~~~~~~~~~~~~~-------~~~~~~~Sa~~~~gi~~~~ 146 (181)
. +....+...++... +++++++||++|.|+.+++
T Consensus 197 ~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 197 QWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred cccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 1 11223455666655 3569999999999998766
No 171
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.80 E-value=3e-20 Score=143.54 Aligned_cols=107 Identities=12% Similarity=0.136 Sum_probs=75.5
Q ss_pred ECCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChh---HHH---HHHHHHHHHHHhCCCCc-eEEEEEeCCC
Q 030225 36 LNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMD---SFE---RAKKWVQELQRQGNPNL-IMFLVANKVD 108 (181)
Q Consensus 36 ~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~-p~ivi~nK~D 108 (181)
++....++.||||||+..|...+..++..+|++|+|+|++++. +|+ ....++..+.. .+. ++++++||+|
T Consensus 80 ~~~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~---~~v~~iivviNK~D 156 (458)
T 1f60_A 80 FETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT---LGVRQLIVAVNKMD 156 (458)
T ss_dssp EECSSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH---TTCCEEEEEEECGG
T ss_pred EecCCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH---cCCCeEEEEEEccc
Confidence 3444567999999999999988888999999999999998653 221 23333333332 244 4899999999
Q ss_pred Ccccc----cCCHHHHHHHHHHcC-----CeEEEEecCCCCCHHHH
Q 030225 109 LEEKR----KVKNEEGELYAQENG-----LSFLETSAKSAHNVNEL 145 (181)
Q Consensus 109 ~~~~~----~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~~ 145 (181)
+.+.. +....+...+++..+ ++++++||++|.|+.++
T Consensus 157 l~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 157 SVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp GGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred cccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 86311 112234555666665 68999999999998754
No 172
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.79 E-value=4.1e-20 Score=146.92 Aligned_cols=143 Identities=17% Similarity=0.182 Sum_probs=92.5
Q ss_pred CCCchhHHHHHHhhCCCCCccc-----------------------------cceeeeEEEEEEEECCeEEEEEEEeCCCh
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQE-----------------------------STIGAAFFTQVLSLNEVTIKFDIWDTAGQ 51 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~-----------------------------~t~~~~~~~~~~~~~~~~~~~~i~D~~G~ 51 (181)
||+|||||+++|++........ ...|+++......+.....++.||||||+
T Consensus 176 ~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~~~~~iiDTPG~ 255 (611)
T 3izq_1 176 VDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRANFTIVDAPGH 255 (611)
T ss_dssp SSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSSCEEEEEECCSS
T ss_pred CCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCCceEEEEECCCC
Confidence 6899999999998653321110 01133332233333444567899999999
Q ss_pred hhhhccchhhccCCcEEEEEEECCChhH---H---HHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCC----HHHHH
Q 030225 52 ERYHSLAPMYYRGAAAAVVVYDITSMDS---F---ERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVK----NEEGE 121 (181)
Q Consensus 52 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~----~~~~~ 121 (181)
..|...+..+++.+|++|+|+|++++.. + ......+..+... ..+|+++++||+|+.+..+.. ..+..
T Consensus 256 e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~l--gi~~iIVVvNKiDl~~~~~~~~~ei~~~l~ 333 (611)
T 3izq_1 256 RDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL--GIHNLIIAMNKMDNVDWSQQRFEEIKSKLL 333 (611)
T ss_dssp SCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTT--TCCEEEEEEECTTTTTTCHHHHHHHHHHHH
T ss_pred cccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHc--CCCeEEEEEecccccchhHHHHHHHHHHHH
Confidence 9999888899999999999999986421 1 1222222222222 235699999999986532221 22333
Q ss_pred HHHHHcC-----CeEEEEecCCCCCHHHH
Q 030225 122 LYAQENG-----LSFLETSAKSAHNVNEL 145 (181)
Q Consensus 122 ~~~~~~~-----~~~~~~Sa~~~~gi~~~ 145 (181)
.++...+ ++++++||++|.|+.++
T Consensus 334 ~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 334 PYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp HHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred HHHHhhcccccCccEEeeecccCCCcccc
Confidence 4444443 58999999999999876
No 173
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.79 E-value=1.6e-19 Score=149.55 Aligned_cols=149 Identities=15% Similarity=0.113 Sum_probs=99.8
Q ss_pred CCCchhHHHHHHhhCC-------CCC-------ccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccCCc
Q 030225 1 MGTGKTSLVLRFVKGQ-------FFD-------FQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAA 66 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~-------~~~-------~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 66 (181)
+++|||||+++|.+.. +.. ....+.|+++....+.++....++.||||||++.|..++..++..+|
T Consensus 305 vDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF~~~mi~gas~AD 384 (1289)
T 3avx_A 305 VDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMD 384 (1289)
T ss_dssp TTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHHHHHHHHTSCCCS
T ss_pred CCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHHHHHHHHHHhhCC
Confidence 5899999999998641 000 01123344443333445555568899999999999888888999999
Q ss_pred EEEEEEECCChhHHHHHHHHHHHHHHhCCCCce-EEEEEeCCCCccccc---CCHHHHHHHHHHcC-----CeEEEEecC
Q 030225 67 AAVVVYDITSMDSFERAKKWVQELQRQGNPNLI-MFLVANKVDLEEKRK---VKNEEGELYAQENG-----LSFLETSAK 137 (181)
Q Consensus 67 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivi~nK~D~~~~~~---~~~~~~~~~~~~~~-----~~~~~~Sa~ 137 (181)
++|+|+|++++.. .....++..+... +.| +++++||+|+.+..+ ...++...++...+ ++++++||+
T Consensus 385 ~aILVVDAtdGv~-~QTrEhL~ll~~l---gIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~~~~vp~IpvSAk 460 (1289)
T 3avx_A 385 GAILVVAATDGPM-PQTREHILLGRQV---GVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSAL 460 (1289)
T ss_dssp EEEEEEETTTCSC-TTHHHHHHHHHHH---TCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSCTTTCCEEECCST
T ss_pred EEEEEEcCCccCc-HHHHHHHHHHHHc---CCCeEEEEEeecccccchhhHHHHHHHHHHHHHhccccccceeEEEEEec
Confidence 9999999998532 2344455555443 566 789999999964221 12234556666665 689999999
Q ss_pred CC--------CCHHHHHHHHHHHH
Q 030225 138 SA--------HNVNELFYEIAKRL 153 (181)
Q Consensus 138 ~~--------~gi~~~~~~l~~~~ 153 (181)
+| .|+.++++.|.+.+
T Consensus 461 tG~ng~~~w~eGI~eLleaL~~~I 484 (1289)
T 3avx_A 461 KALEGDAEWEAKILELAGFLDSYI 484 (1289)
T ss_dssp TTTTCCHHHHHHHHHHHHHHHHTS
T ss_pred cCCCCCccccccchhhHhHHhhhc
Confidence 99 46888888877654
No 174
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.78 E-value=3.6e-19 Score=124.05 Aligned_cols=146 Identities=14% Similarity=0.149 Sum_probs=90.2
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhh----------hhccchhhc---cCCcE
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER----------YHSLAPMYY---RGAAA 67 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----------~~~~~~~~~---~~~d~ 67 (181)
+|||||||+++|.+..+...+.++.|.++....+..++ .+.+||+||... +......++ ..+++
T Consensus 35 ~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (210)
T 1pui_A 35 SNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQG 111 (210)
T ss_dssp TTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHHHHHHHHCTTEEE
T ss_pred CCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHHHHHHHhhhcccE
Confidence 69999999999998775444556767655444444433 467999999732 222223344 57899
Q ss_pred EEEEEECCChhHHHH--HHHHHHHHHHhCCCCceEEEEEeCCCCcccc--cCCHHHHHHHHHHcC--CeEEEEecCCCCC
Q 030225 68 AVVVYDITSMDSFER--AKKWVQELQRQGNPNLIMFLVANKVDLEEKR--KVKNEEGELYAQENG--LSFLETSAKSAHN 141 (181)
Q Consensus 68 ~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~--~~~~~~~~~~~~~~~--~~~~~~Sa~~~~g 141 (181)
+++++|++++.+... +..|+ .. .+.|+++++||+|+.... +.....+..++.+.+ +.++++||+++.|
T Consensus 112 ~~~v~d~~~~~~~~~~~~~~~~----~~--~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~ 185 (210)
T 1pui_A 112 LVVLMDIRHPLKDLDQQMIEWA----VD--SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQG 185 (210)
T ss_dssp EEEEEETTSCCCHHHHHHHHHH----HH--TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBS
T ss_pred EEEEEECCCCCchhHHHHHHHH----HH--cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCC
Confidence 999999987654432 22332 22 367899999999975422 211234445555554 5678999999999
Q ss_pred HHHHHHHHHHHHHh
Q 030225 142 VNELFYEIAKRLAE 155 (181)
Q Consensus 142 i~~~~~~l~~~~~~ 155 (181)
+++++++|.+.+.+
T Consensus 186 ~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 186 VDKLRQKLDTWFSE 199 (210)
T ss_dssp HHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999887654
No 175
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.78 E-value=1.7e-18 Score=131.60 Aligned_cols=154 Identities=17% Similarity=0.119 Sum_probs=103.2
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhh----hhccchhh---ccCCcEEEEEEE
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER----YHSLAPMY---YRGAAAAVVVYD 73 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----~~~~~~~~---~~~~d~~i~v~d 73 (181)
||||||||+++|.+........+..+.....-.+..++ ...+.+||+||... +..+...+ +..++.+++++|
T Consensus 166 ~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~~lL~vvD 244 (416)
T 1udx_A 166 PNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLD 244 (416)
T ss_dssp GGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEE
T ss_pred CCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHHHhhhEEeC
Confidence 69999999999987643211111111111122233333 24678999999632 22232222 457999999999
Q ss_pred CCChhHHHHHHHHHHHHHHhC--CCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHH
Q 030225 74 ITSMDSFERAKKWVQELQRQG--NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAK 151 (181)
Q Consensus 74 ~~~~~s~~~~~~~~~~~~~~~--~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 151 (181)
++ ...+..+..|.+++.... ....|.++++||+|+... ....+....++..+++++.+||++++|+++++++|.+
T Consensus 245 ls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~--~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i~~ 321 (416)
T 1udx_A 245 AA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE--EAVKALADALAREGLAVLPVSALTGAGLPALKEALHA 321 (416)
T ss_dssp TT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH--HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHHH
T ss_pred Cc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH--HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHHHH
Confidence 98 566777777766665542 135789999999998653 2223344555556789999999999999999999999
Q ss_pred HHHhhCC
Q 030225 152 RLAEVNP 158 (181)
Q Consensus 152 ~~~~~~~ 158 (181)
.+.+...
T Consensus 322 ~l~~~~~ 328 (416)
T 1udx_A 322 LVRSTPP 328 (416)
T ss_dssp HHHTSCC
T ss_pred HHHhccc
Confidence 9987654
No 176
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.78 E-value=9.8e-19 Score=140.43 Aligned_cols=106 Identities=18% Similarity=0.083 Sum_probs=73.0
Q ss_pred CCCchhHHHHHHhhCCCCCcccc----------------ceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccC
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQES----------------TIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 64 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~----------------t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 64 (181)
+|+|||||+++|++......... ..+.++......+....+.+++|||||+..|...+..+++.
T Consensus 18 ~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~f~~~~~~~l~~ 97 (665)
T 2dy1_A 18 AGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDFVGEIRGALEA 97 (665)
T ss_dssp TTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGGHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccchHHHHHHHHhh
Confidence 58999999999985332211101 11223333333343445788999999999998888999999
Q ss_pred CcEEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCc
Q 030225 65 AAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLE 110 (181)
Q Consensus 65 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~ 110 (181)
+|++++|+|+++..... ...++..+.. .+.|+++++||+|+.
T Consensus 98 ad~~ilVvD~~~g~~~q-t~~~~~~~~~---~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 98 ADAALVAVSAEAGVQVG-TERAWTVAER---LGLPRMVVVTKLDKG 139 (665)
T ss_dssp CSEEEEEEETTTCSCHH-HHHHHHHHHH---TTCCEEEEEECGGGC
T ss_pred cCcEEEEEcCCcccchh-HHHHHHHHHH---ccCCEEEEecCCchh
Confidence 99999999988754332 2344444443 368999999999985
No 177
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.77 E-value=9.8e-20 Score=133.52 Aligned_cols=110 Identities=15% Similarity=0.128 Sum_probs=73.6
Q ss_pred EEEEEEeCCChh-------------hhhccchhhccCCcEEE-EEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeC
Q 030225 41 IKFDIWDTAGQE-------------RYHSLAPMYYRGAAAAV-VVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANK 106 (181)
Q Consensus 41 ~~~~i~D~~G~~-------------~~~~~~~~~~~~~d~~i-~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK 106 (181)
..+.+|||||.. .+..+...+++.++.+| +|+|+++.........++..+ ...+.|+++|+||
T Consensus 125 ~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~---~~~~~~~i~V~NK 201 (299)
T 2aka_B 125 LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEV---DPQGQRTIGVITK 201 (299)
T ss_dssp CSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHH---CTTCSSEEEEEEC
T ss_pred CCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHh---CCCCCeEEEEEEc
Confidence 578999999953 34556677888888776 799998754433333344444 2347899999999
Q ss_pred CCCcccccCCHHHHHHHHHH--cC-CeEEEEecCCCCCHHHHHHHHHHHH
Q 030225 107 VDLEEKRKVKNEEGELYAQE--NG-LSFLETSAKSAHNVNELFYEIAKRL 153 (181)
Q Consensus 107 ~D~~~~~~~~~~~~~~~~~~--~~-~~~~~~Sa~~~~gi~~~~~~l~~~~ 153 (181)
+|+.+......+........ .+ .+++++||+++.|+++++++|.+..
T Consensus 202 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~~ 251 (299)
T 2aka_B 202 LDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAER 251 (299)
T ss_dssp GGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHHH
T ss_pred cccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHHH
Confidence 99865443222222210001 12 3578999999999999999998743
No 178
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.73 E-value=8e-20 Score=144.84 Aligned_cols=138 Identities=18% Similarity=0.180 Sum_probs=72.4
Q ss_pred CCCchhHHHHHHhhCCCC-------------------------------CccccceeeeEEEEEEEECCeEEEEEEEeCC
Q 030225 1 MGTGKTSLVLRFVKGQFF-------------------------------DFQESTIGAAFFTQVLSLNEVTIKFDIWDTA 49 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~-------------------------------~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~ 49 (181)
+|+|||||+++|+..... .+. ..|+++......+......+.|||||
T Consensus 186 ~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~--~~GiTid~~~~~~~~~~~~i~iiDTP 263 (592)
T 3mca_A 186 VDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEER--ARGVTMDVASTTFESDKKIYEIGDAP 263 (592)
T ss_dssp SSSTHHHHHHHHHHHHHCC--------------------------------------------------------CCEEE
T ss_pred CCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhh--cCCeeEEeeEEEEEeCCeEEEEEECC
Confidence 689999999999742110 111 12333333333444455788999999
Q ss_pred ChhhhhccchhhccCCcEEEEEEECCChh---HH---HHHHHHHHHHHHhCCCCce-EEEEEeCCCCcccccC----CHH
Q 030225 50 GQERYHSLAPMYYRGAAAAVVVYDITSMD---SF---ERAKKWVQELQRQGNPNLI-MFLVANKVDLEEKRKV----KNE 118 (181)
Q Consensus 50 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~---~~~~~~~~~~~~~~~~~~p-~ivi~nK~D~~~~~~~----~~~ 118 (181)
|+..|...+...+..+|++|+|+|++++. .+ .....++..+... +.| +++++||+|+.+..+. ...
T Consensus 264 Gh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~l---gip~iIvviNKiDl~~~~~~~~~~i~~ 340 (592)
T 3mca_A 264 GHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRAL---GISEIVVSVNKLDLMSWSEDRFQEIKN 340 (592)
T ss_dssp SSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHS---SCCCEEEEEECGGGGTTCHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHc---CCCeEEEEEeccccccccHHHHHHHHH
Confidence 99999988888999999999999998642 11 1122233333332 344 8899999998642111 112
Q ss_pred HHHHHH-HHcCC-----eEEEEecCCCCCHH
Q 030225 119 EGELYA-QENGL-----SFLETSAKSAHNVN 143 (181)
Q Consensus 119 ~~~~~~-~~~~~-----~~~~~Sa~~~~gi~ 143 (181)
+...++ ...++ +++++||++|.|+.
T Consensus 341 el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~ 371 (592)
T 3mca_A 341 IVSDFLIKMVGFKTSNVHFVPISAISGTNLI 371 (592)
T ss_dssp HHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred HHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence 333344 33444 79999999999998
No 179
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.73 E-value=1.8e-17 Score=129.75 Aligned_cols=107 Identities=16% Similarity=0.124 Sum_probs=69.4
Q ss_pred CCCchhHHHHHHhhCCCCCcc--------------------ccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchh
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQ--------------------ESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPM 60 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~--------------------~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~ 60 (181)
+|+|||||+++|+........ .++.|.++......+....+.+.+|||||+..|......
T Consensus 22 ~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG~~df~~~~~~ 101 (529)
T 2h5e_A 22 PDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPGHEDFSEDTYR 101 (529)
T ss_dssp TTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCCSTTCCHHHHH
T ss_pred CCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCCChhHHHHHHH
Confidence 689999999999964211100 012222222222333334568899999999998888888
Q ss_pred hccCCcEEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcc
Q 030225 61 YYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEE 111 (181)
Q Consensus 61 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~ 111 (181)
++..+|++|+|+|++++.... ...++..+ ...+.|+++++||+|+..
T Consensus 102 ~l~~aD~~IlVvDa~~g~~~~-t~~~~~~~---~~~~ipiivviNK~Dl~~ 148 (529)
T 2h5e_A 102 TLTAVDCCLMVIDAAKGVEDR-TRKLMEVT---RLRDTPILTFMNKLDRDI 148 (529)
T ss_dssp GGGGCSEEEEEEETTTCSCHH-HHHHHHHH---TTTTCCEEEEEECTTSCC
T ss_pred HHHHCCEEEEEEeCCccchHH-HHHHHHHH---HHcCCCEEEEEcCcCCcc
Confidence 999999999999998753221 22233332 224789999999999853
No 180
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.73 E-value=8.7e-18 Score=135.44 Aligned_cols=107 Identities=20% Similarity=0.157 Sum_probs=71.7
Q ss_pred CCCchhHHHHHHhhCCCCCc----------ccc------ceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccC
Q 030225 1 MGTGKTSLVLRFVKGQFFDF----------QES------TIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 64 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~----------~~~------t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 64 (181)
+|+|||||+++|+....... ... ..+.++......+....+.+++|||||+..|...+..+++.
T Consensus 21 ~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~ 100 (691)
T 1dar_A 21 IDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVDFTIEVERSMRV 100 (691)
T ss_dssp TTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTTCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccchHHHHHHHHHH
Confidence 68999999999984211100 000 11111222222222234688999999999998888999999
Q ss_pred CcEEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcc
Q 030225 65 AAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEE 111 (181)
Q Consensus 65 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~ 111 (181)
+|++|+|+|+++...+.....|.. +.. .+.|+++++||+|+..
T Consensus 101 aD~~ilVvDa~~g~~~~t~~~~~~-~~~---~~~p~ivviNKiD~~~ 143 (691)
T 1dar_A 101 LDGAIVVFDSSQGVEPQSETVWRQ-AEK---YKVPRIAFANKMDKTG 143 (691)
T ss_dssp CSEEEEEEETTTCSCHHHHHHHHH-HHH---TTCCEEEEEECTTSTT
T ss_pred CCEEEEEEECCCCcchhhHHHHHH-HHH---cCCCEEEEEECCCccc
Confidence 999999999998777666555543 333 3689999999999853
No 181
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.72 E-value=1.2e-18 Score=127.82 Aligned_cols=153 Identities=14% Similarity=0.153 Sum_probs=79.9
Q ss_pred CCCchhHHHHHHhhC-CCCCcc--------ccceeeeEEEEEEEECCeEEEEEEEeCCCh-------hhhhccch-----
Q 030225 1 MGTGKTSLVLRFVKG-QFFDFQ--------ESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ-------ERYHSLAP----- 59 (181)
Q Consensus 1 ~~~GKttLl~~l~~~-~~~~~~--------~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~-------~~~~~~~~----- 59 (181)
+|||||||+++|.+. .++... .++.+..........++....+.+||++|. +.+..+..
T Consensus 27 nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~~~l~~~l~~~ 106 (301)
T 2qnr_A 27 SGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQ 106 (301)
T ss_dssp TTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------CTTHHHHHHHH
T ss_pred CCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHHHHHHHHHHHH
Confidence 699999999998875 333222 122222221222222344568999999997 44444433
Q ss_pred --hhccC-------------CcEEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccc--CCHHHHHH
Q 030225 60 --MYYRG-------------AAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRK--VKNEEGEL 122 (181)
Q Consensus 60 --~~~~~-------------~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~--~~~~~~~~ 122 (181)
.++.+ +++++|+.+.+. .+++.+.. ..+.... ...|+++|+||.|+....+ ...+++..
T Consensus 107 ~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~~--~~l~~l~-~~~~iilV~~K~Dl~~~~e~~~~~~~~~~ 182 (301)
T 2qnr_A 107 FERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDV--AFMKAIH-NKVNIVPVIAKADTLTLKERERLKKRILD 182 (301)
T ss_dssp HHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHHH--HHHHHHT-TTSCEEEEECCGGGSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHHH--HHHHHHH-hcCCEEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 33322 334555555432 12332221 2233322 4678999999999865433 23456778
Q ss_pred HHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHhhCC
Q 030225 123 YAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVNP 158 (181)
Q Consensus 123 ~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~~ 158 (181)
+++.++++++++||+++ |++++|.++.+.+.+..|
T Consensus 183 ~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~~~p 217 (301)
T 2qnr_A 183 EIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKASIP 217 (301)
T ss_dssp HHHHTTCCCCCCC----------CHHHHHHHHTTCS
T ss_pred HHHHcCCeEEecCCccc-cccHHHHHHHHHhhcCCC
Confidence 88889999999999999 999999999999987655
No 182
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.72 E-value=2.4e-18 Score=129.31 Aligned_cols=108 Identities=15% Similarity=0.121 Sum_probs=76.7
Q ss_pred EEEEEeCCChhhh-------------hccchhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCC
Q 030225 42 KFDIWDTAGQERY-------------HSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVD 108 (181)
Q Consensus 42 ~~~i~D~~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D 108 (181)
.+.+||+||...+ ..+...++.++|++|+|+|.++.+... ..|+..+......+.|+++|+||+|
T Consensus 137 ~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~~~~~l~~~~~~~~~~~i~V~nK~D 214 (360)
T 3t34_A 137 NLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--SDAIKISREVDPSGDRTFGVLTKID 214 (360)
T ss_dssp SEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--CHHHHHHHHSCTTCTTEEEEEECGG
T ss_pred CeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--HHHHHHHHHhcccCCCEEEEEeCCc
Confidence 5789999997654 456678899999999999876543221 2344444444445789999999999
Q ss_pred CcccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHH
Q 030225 109 LEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAK 151 (181)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 151 (181)
+.+......+....+....+.+|+.++++++.++++.+.++..
T Consensus 215 l~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~~~~ 257 (360)
T 3t34_A 215 LMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDMIAA 257 (360)
T ss_dssp GCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCHHHH
T ss_pred cCCCcccHHHHHcCccccccCCeEEEEECChHHhccCCCHHHH
Confidence 9765554444444444456788999999999888877665443
No 183
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.72 E-value=1.7e-17 Score=119.59 Aligned_cols=109 Identities=15% Similarity=0.103 Sum_probs=72.5
Q ss_pred CCCchhHHHHHHhhCCCCCcc-ccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhcc---------CCcEEEE
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQ-ESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYR---------GAAAAVV 70 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~---------~~d~~i~ 70 (181)
+|+|||||+++|++....... .+..+.......+..++ ..+.+|||||+..+......+++ ++|++++
T Consensus 45 ~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~liDTpG~~~~~~~~~~~~~~i~~~l~~~~~~~il~ 122 (262)
T 3def_A 45 GGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGG--FTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLY 122 (262)
T ss_dssp TTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEE
T ss_pred CCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECC--eeEEEEECCCCCCcccchHHHHHHHHHHHhcCCCCEEEE
Confidence 689999999999987753221 12222223333344444 47889999999877665544443 7899999
Q ss_pred EEECCChhHHHH-HHHHHHHHHHhCCC--CceEEEEEeCCCCccc
Q 030225 71 VYDITSMDSFER-AKKWVQELQRQGNP--NLIMFLVANKVDLEEK 112 (181)
Q Consensus 71 v~d~~~~~s~~~-~~~~~~~~~~~~~~--~~p~ivi~nK~D~~~~ 112 (181)
|+|+++.. +.. ...|+..+...... ..|+++++||+|+...
T Consensus 123 V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~ 166 (262)
T 3def_A 123 VDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPP 166 (262)
T ss_dssp EEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCS
T ss_pred EEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCC
Confidence 99987644 333 34667776664332 2489999999998543
No 184
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.71 E-value=4.8e-17 Score=131.22 Aligned_cols=111 Identities=14% Similarity=0.158 Sum_probs=78.1
Q ss_pred EEEEEeCCChhh---hhccchhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHH
Q 030225 42 KFDIWDTAGQER---YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNE 118 (181)
Q Consensus 42 ~~~i~D~~G~~~---~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~ 118 (181)
.+.||||||... ....+..++.++|++++|+|++++.+..+...|...+.. .+.|+++|+||+|+.....+..+
T Consensus 175 ~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~---~~~~iiiVlNK~Dl~~~~~~~~e 251 (695)
T 2j69_A 175 GIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKG---RGLTVFFLVNAWDQVRESLIDPD 251 (695)
T ss_dssp TEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTT---SCCCEEEEEECGGGGGGGCSSTT
T ss_pred CeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHh---hCCCEEEEEECcccccccccChh
Confidence 588999999754 234456788999999999999988777766655444422 36789999999998654311111
Q ss_pred ----------HHHHH----HHH---------cCCeEEEEecC--------------CCCCHHHHHHHHHHHHHh
Q 030225 119 ----------EGELY----AQE---------NGLSFLETSAK--------------SAHNVNELFYEIAKRLAE 155 (181)
Q Consensus 119 ----------~~~~~----~~~---------~~~~~~~~Sa~--------------~~~gi~~~~~~l~~~~~~ 155 (181)
..... ... ...+++++||+ ++.|+.++++.|.+.+..
T Consensus 252 e~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~~L~~~l~~ 325 (695)
T 2j69_A 252 DVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDGTGFPKFMDSLNTFLTR 325 (695)
T ss_dssp CHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTTSSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCchhhhhccCHHHHHHHHHHHHHH
Confidence 11111 111 12468999999 999999999999887754
No 185
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.70 E-value=2.7e-16 Score=126.93 Aligned_cols=68 Identities=19% Similarity=0.210 Sum_probs=54.1
Q ss_pred eEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCc
Q 030225 39 VTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLE 110 (181)
Q Consensus 39 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~ 110 (181)
..+.++||||||+..|...+..+++.+|++|+|+|+++.........| ..+.. .+.|+++++||+|+.
T Consensus 80 ~~~~i~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~-~~~~~---~~ip~ilviNKiD~~ 147 (704)
T 2rdo_7 80 EPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVW-RQANK---YKVPRIAFVNKMDRM 147 (704)
T ss_pred CceeEEEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHH-HHHHH---cCCCEEEEEeCCCcc
Confidence 347899999999999988889999999999999999987554444333 33322 368999999999974
No 186
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.70 E-value=4.3e-17 Score=120.31 Aligned_cols=113 Identities=15% Similarity=0.125 Sum_probs=71.0
Q ss_pred EEEEEEeCCChhh-------------hhccchhhccCCcEEEEEEECCChhHH-HHHHHHHHHHHHhCCCCceEEEEEeC
Q 030225 41 IKFDIWDTAGQER-------------YHSLAPMYYRGAAAAVVVYDITSMDSF-ERAKKWVQELQRQGNPNLIMFLVANK 106 (181)
Q Consensus 41 ~~~~i~D~~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~p~ivi~nK 106 (181)
..+.+|||||... +......++.++|++++|+|.++.... .....++..+ ...+.|+++|+||
T Consensus 131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~---~~~~~~~i~v~NK 207 (315)
T 1jwy_B 131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEV---DPEGKRTIGVITK 207 (315)
T ss_dssp CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHH---CSSCSSEEEEEEC
T ss_pred CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHh---CCCCCcEEEEEcC
Confidence 4689999999643 445567788999999999997443211 1111222222 2247899999999
Q ss_pred CCCcccccCCHHHHHHHHHHcCCeEEEEecC---C---CCCHHHHHHHHHHHHHhh
Q 030225 107 VDLEEKRKVKNEEGELYAQENGLSFLETSAK---S---AHNVNELFYEIAKRLAEV 156 (181)
Q Consensus 107 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~---~---~~gi~~~~~~l~~~~~~~ 156 (181)
+|+.+......+.........+..++++++. + +.|+.++++.+.+.+...
T Consensus 208 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~~ 263 (315)
T 1jwy_B 208 LDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFKNH 263 (315)
T ss_dssp TTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHHTC
T ss_pred cccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHhCC
Confidence 9987544322222221111122566666655 4 689999999998877654
No 187
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.69 E-value=6.9e-17 Score=130.25 Aligned_cols=107 Identities=18% Similarity=0.134 Sum_probs=70.9
Q ss_pred CCCchhHHHHHHhhC--CCCC-----------cccc---ceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccC
Q 030225 1 MGTGKTSLVLRFVKG--QFFD-----------FQES---TIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 64 (181)
Q Consensus 1 ~~~GKttLl~~l~~~--~~~~-----------~~~~---t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 64 (181)
+|+|||||+++|+.. .+.. .+.+ ..++++......+....+.+++|||||+..|...+..+++.
T Consensus 19 ~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~ 98 (693)
T 2xex_A 19 IDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVDFTVEVERSLRV 98 (693)
T ss_dssp GGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCSSCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCcchHHHHHHHHHH
Confidence 589999999999852 2110 0000 01111111112222234678999999999888888889999
Q ss_pred CcEEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcc
Q 030225 65 AAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEE 111 (181)
Q Consensus 65 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~ 111 (181)
+|++|+|+|+++.........|. .+.. .+.|+++++||+|+..
T Consensus 99 aD~~llVvDa~~g~~~~~~~~~~-~~~~---~~~p~ilviNK~Dl~~ 141 (693)
T 2xex_A 99 LDGAVTVLDAQSGVEPQTETVWR-QATT---YGVPRIVFVNKMDKLG 141 (693)
T ss_dssp CSEEEEEEETTTBSCHHHHHHHH-HHHH---TTCCEEEEEECTTSTT
T ss_pred CCEEEEEECCCCCCcHHHHHHHH-HHHH---cCCCEEEEEECCCccc
Confidence 99999999999876666555443 3433 3689999999999853
No 188
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.69 E-value=6.7e-17 Score=116.96 Aligned_cols=111 Identities=11% Similarity=0.092 Sum_probs=71.4
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccch-------hh--ccCCcEEEEE
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAP-------MY--YRGAAAAVVV 71 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~-------~~--~~~~d~~i~v 71 (181)
+|+|||||+|+|++..+.... ++.+.++......+......+.+|||||...+..... .+ ...+|+++||
T Consensus 48 ~g~GKSSLin~l~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v 126 (270)
T 1h65_A 48 GGVGKSSTVNSIIGERVVSIS-PFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYV 126 (270)
T ss_dssp TTSSHHHHHHHHHTSCCSCCC-SSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEE
T ss_pred CCCCHHHHHHHHhCCCccccc-CCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhhcCCCCEEEEE
Confidence 699999999999987753221 2223333233333333446788999999866543322 11 3469999999
Q ss_pred EECCChhHHHH-HHHHHHHHHHhCCCC--ceEEEEEeCCCCcccc
Q 030225 72 YDITSMDSFER-AKKWVQELQRQGNPN--LIMFLVANKVDLEEKR 113 (181)
Q Consensus 72 ~d~~~~~s~~~-~~~~~~~~~~~~~~~--~p~ivi~nK~D~~~~~ 113 (181)
+|++.. ++.. ...|+..+....... .|+++|+||+|+....
T Consensus 127 ~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~ 170 (270)
T 1h65_A 127 DRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPD 170 (270)
T ss_dssp EESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGG
T ss_pred EeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcC
Confidence 998653 3433 246777776543322 6999999999986543
No 189
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.68 E-value=4.5e-17 Score=123.93 Aligned_cols=148 Identities=15% Similarity=0.193 Sum_probs=74.1
Q ss_pred CCCchhHHHHHHhhCCCCCc-c-------ccceeeeEEEEEEEECCeEEEEEEEeCCChhhhh-------c---------
Q 030225 1 MGTGKTSLVLRFVKGQFFDF-Q-------ESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYH-------S--------- 56 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~-~-------~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~--------- 56 (181)
+|||||||+++|++..+... . .++++.......+...+....+.+||++|...+. .
T Consensus 40 sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~i~~~i~~~~ 119 (418)
T 2qag_C 40 SGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKF 119 (418)
T ss_dssp TTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHHHHHHHHHHHH
Confidence 69999999999998765311 1 1223222222222223344578999999975431 1
Q ss_pred ---------cchhhccCCcEEEEEEECCCh-hHHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCcccccCCH--HHHHHH
Q 030225 57 ---------LAPMYYRGAAAAVVVYDITSM-DSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEEKRKVKN--EEGELY 123 (181)
Q Consensus 57 ---------~~~~~~~~~d~~i~v~d~~~~-~s~~~~~-~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~--~~~~~~ 123 (181)
+...++.++++.+++|+.... .+++... .|+..+. .+.|+++|+||+|+....++.. .++..+
T Consensus 120 ~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~----~~v~iIlVinK~Dll~~~ev~~~k~~i~~~ 195 (418)
T 2qag_C 120 EDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH----EKVNIIPLIAKADTLTPEECQQFKKQIMKE 195 (418)
T ss_dssp HHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT----TTSEEEEEEESTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh----ccCcEEEEEEcccCccHHHHHHHHHHHHHH
Confidence 123455666654555544432 2343332 4555552 3689999999999866544443 566777
Q ss_pred HHHcCCeEEEEecCCCCCHHHHHHHHHHH
Q 030225 124 AQENGLSFLETSAKSAHNVNELFYEIAKR 152 (181)
Q Consensus 124 ~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~ 152 (181)
+..++++++++|+.++.++.++|..+...
T Consensus 196 ~~~~~i~~~~~sa~~~~~v~~~~~~l~~~ 224 (418)
T 2qag_C 196 IQEHKIKIYEFPETDDEEENKLVKKIKDR 224 (418)
T ss_dssp HHHHTCCCCCCC-----------------
T ss_pred HHHcCCeEEeCCCCCCcCHHHHHHHHHhh
Confidence 88889999999999999999888777653
No 190
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.67 E-value=2.8e-17 Score=124.60 Aligned_cols=77 Identities=22% Similarity=0.058 Sum_probs=40.3
Q ss_pred CCCchhHHHHHHhhCCCCCcccc--ceeeeEEEEEEE-------------------ECC-eEEEEEEEeCCChhh----h
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQES--TIGAAFFTQVLS-------------------LNE-VTIKFDIWDTAGQER----Y 54 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~--t~~~~~~~~~~~-------------------~~~-~~~~~~i~D~~G~~~----~ 54 (181)
||||||||+|+|.+........| |.........+. +++ ..+++.+||+||... .
T Consensus 9 pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG~~~~a~~~ 88 (397)
T 1wxq_A 9 PNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAGLVPGAHEG 88 (397)
T ss_dssp TTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC---------
T ss_pred CCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCCcccchhhh
Confidence 79999999999998763211111 111111111111 122 257899999999753 2
Q ss_pred hccch---hhccCCcEEEEEEECCCh
Q 030225 55 HSLAP---MYYRGAAAAVVVYDITSM 77 (181)
Q Consensus 55 ~~~~~---~~~~~~d~~i~v~d~~~~ 77 (181)
..+.. .+++++|++++|+|+++.
T Consensus 89 ~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 89 RGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp ------CCCSSTTCSEEEEEEETTCC
T ss_pred hhHHHHHHHHHhcCCEEEEEEecccc
Confidence 22333 346899999999999875
No 191
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.67 E-value=7.9e-17 Score=113.10 Aligned_cols=105 Identities=18% Similarity=0.115 Sum_probs=70.2
Q ss_pred EEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHH
Q 030225 41 IKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEG 120 (181)
Q Consensus 41 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~ 120 (181)
+.+.+||++|..... ..+....+.+++|+|+++.... ...+... .+.|.++++||+|+.+......++.
T Consensus 109 ~d~iiidt~G~~~~~---~~~~~~~~~~i~vvd~~~~~~~--~~~~~~~------~~~~~iiv~NK~Dl~~~~~~~~~~~ 177 (221)
T 2wsm_A 109 CDLLLIENVGNLICP---VDFDLGENYRVVMVSVTEGDDV--VEKHPEI------FRVADLIVINKVALAEAVGADVEKM 177 (221)
T ss_dssp CSEEEEEEEEBSSGG---GGCCCSCSEEEEEEEGGGCTTH--HHHCHHH------HHTCSEEEEECGGGHHHHTCCHHHH
T ss_pred CCEEEEeCCCCCCCC---chhccccCcEEEEEeCCCcchh--hhhhhhh------hhcCCEEEEecccCCcchhhHHHHH
Confidence 467899999851100 0111256889999998865321 1111111 1467899999999865444455666
Q ss_pred HHHHHHc--CCeEEEEecCCCCCHHHHHHHHHHHHHhh
Q 030225 121 ELYAQEN--GLSFLETSAKSAHNVNELFYEIAKRLAEV 156 (181)
Q Consensus 121 ~~~~~~~--~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~ 156 (181)
...++.. +++++++||++|.|+++++++|.+.+...
T Consensus 178 ~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~ 215 (221)
T 2wsm_A 178 KADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVH 215 (221)
T ss_dssp HHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC--
T ss_pred HHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHH
Confidence 6666654 47899999999999999999999877554
No 192
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.63 E-value=4.7e-18 Score=119.77 Aligned_cols=144 Identities=20% Similarity=0.216 Sum_probs=85.8
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEE------------EEEEEEC-CeE-------------------EEEEEEeC
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFF------------TQVLSLN-EVT-------------------IKFDIWDT 48 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~------------~~~~~~~-~~~-------------------~~~~i~D~ 48 (181)
+|||||||+++|+...+...+.++++.++. ...+.++ +.. ..+.++|+
T Consensus 47 ~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~d~~~id~ 126 (226)
T 2hf9_A 47 IGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNLDEIDLLFIEN 126 (226)
T ss_dssp TTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCGGGCSEEEEEC
T ss_pred CCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhcCCCCEEEEeC
Confidence 699999999999987665545556554432 1222222 111 13445555
Q ss_pred CChhhhhccchhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHc-
Q 030225 49 AGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQEN- 127 (181)
Q Consensus 49 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~- 127 (181)
+|..... ..+-...+.++.++|......... ..... ...|.++++||+|+.+......++...+++..
T Consensus 127 ~g~i~~~---~s~~~~~~~~~~v~~~~~~~~~~~--~~~~~------~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~ 195 (226)
T 2hf9_A 127 VGNLICP---ADFDLGTHKRIVVISTTEGDDTIE--KHPGI------MKTADLIVINKIDLADAVGADIKKMENDAKRIN 195 (226)
T ss_dssp CSCSSGG---GGCCCSCSEEEEEEEGGGCTTTTT--TCHHH------HTTCSEEEEECGGGHHHHTCCHHHHHHHHHHHC
T ss_pred CCCccCc---chhhhccCcEEEEEecCcchhhHh--hhhhH------hhcCCEEEEeccccCchhHHHHHHHHHHHHHhC
Confidence 5521000 011112344566676432211100 00011 13678999999999765445666777777655
Q ss_pred -CCeEEEEecCCCCCHHHHHHHHHHHHHh
Q 030225 128 -GLSFLETSAKSAHNVNELFYEIAKRLAE 155 (181)
Q Consensus 128 -~~~~~~~Sa~~~~gi~~~~~~l~~~~~~ 155 (181)
+++++++||++|.|++++|++|.+.+..
T Consensus 196 ~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 224 (226)
T 2hf9_A 196 PDAEVVLLSLKTMEGFDKVLEFIEKSVKE 224 (226)
T ss_dssp TTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence 5789999999999999999999987764
No 193
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.59 E-value=2.1e-14 Score=107.18 Aligned_cols=136 Identities=16% Similarity=0.053 Sum_probs=81.1
Q ss_pred CCCchhHHHHHHhhCCCCCcccc--ceeeeEEEEEEEECCe---------------EEEEEEEeCCChhhhh----ccch
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQES--TIGAAFFTQVLSLNEV---------------TIKFDIWDTAGQERYH----SLAP 59 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~--t~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~~~----~~~~ 59 (181)
||||||||+|+|.+........| |++.... .+.+++. ...+.+||+||...+. .+..
T Consensus 11 pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g--~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~~~gl~~ 88 (363)
T 1jal_A 11 PNVGKSTLFNALTKAGIEAANYPFCTIEPNTG--VVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASKGEGLGN 88 (363)
T ss_dssp TTSSHHHHHHHHHHTC------CCCCCCCCSS--EEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHHHGGGTC
T ss_pred CCCCHHHHHHHHHCCCCcccCCCCceECceEE--EEecCCcccceeeeeecccceeeeEEEEEECCCCcccccccchHHH
Confidence 79999999999998764222112 2222221 2233332 2578999999986542 2332
Q ss_pred ---hhccCCcEEEEEEECCCh----------hHHHHHHHHHHH-------------------------------------
Q 030225 60 ---MYYRGAAAAVVVYDITSM----------DSFERAKKWVQE------------------------------------- 89 (181)
Q Consensus 60 ---~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~------------------------------------- 89 (181)
.+++++|++++|+|+++. +.+..+..+..+
T Consensus 89 ~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~k~~k~g~~~~~~~~~~l~~~ 168 (363)
T 1jal_A 89 KFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTELALADLDSCERAIQRLQKRAKGGDKEAKFELSVMEKI 168 (363)
T ss_dssp CHHHHHHTCSEEEEEEECSCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHHHHHHHHhhhHHHHhhHHHHHHHHhhccchhHHHHHHHHHHH
Confidence 347899999999999862 222222211111
Q ss_pred ---HHH-------------------h-CCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCC
Q 030225 90 ---LQR-------------------Q-GNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKS 138 (181)
Q Consensus 90 ---~~~-------------------~-~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 138 (181)
+.. . ....+|+++++|+.|..-...........++...+.+++.+||+.
T Consensus 169 ~~~L~~~~~~~~~~~~~~e~~~l~~~~llt~KPvi~v~N~~e~~~~~n~~~~~v~~~~~~~~~~~i~~sA~~ 240 (363)
T 1jal_A 169 LPVLENAGMIRSVGLDKEELQAIKSYNFLTLKPTMYIANVNEDGFENNPYLDRVREIAAKEGAVVVPVCAAI 240 (363)
T ss_dssp HHHHHTTCCGGGSCCCHHHHHHHGGGCCSTTSCEEEEEECCTTCSSSCHHHHHHHHHHHHTTCEEEEECHHH
T ss_pred HHHHhcCCCccccCCCHHHHHHHHHhhcccCCcEEEEEecccccccccHHHHHHHHHHHHcCCCEEEechHH
Confidence 100 0 113599999999998632122234556778888899999999653
No 194
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.59 E-value=1e-15 Score=114.79 Aligned_cols=103 Identities=17% Similarity=0.151 Sum_probs=69.9
Q ss_pred EEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHH
Q 030225 41 IKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEG 120 (181)
Q Consensus 41 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~ 120 (181)
+.+.||||||... .....+..+|++++|+|....+....+.. .....|.++|+||+|+....... ...
T Consensus 172 ~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~~--------~~~~~p~ivVlNK~Dl~~~~~~~-~~~ 239 (355)
T 3p32_A 172 FDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIKK--------GVLELADIVVVNKADGEHHKEAR-LAA 239 (355)
T ss_dssp CCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCCT--------TSGGGCSEEEEECCCGGGHHHHH-HHH
T ss_pred CCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHHH--------hHhhcCCEEEEECCCCcChhHHH-HHH
Confidence 5788999999432 22344588999999999876554322211 11346899999999985432211 111
Q ss_pred HHHHHH----------cCCeEEEEecCCCCCHHHHHHHHHHHHHh
Q 030225 121 ELYAQE----------NGLSFLETSAKSAHNVNELFYEIAKRLAE 155 (181)
Q Consensus 121 ~~~~~~----------~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~ 155 (181)
..+... ++.+++.+||++|+|+++++++|.+.+..
T Consensus 240 ~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 240 RELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp HHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 122211 25789999999999999999999998765
No 195
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.58 E-value=9.4e-16 Score=105.03 Aligned_cols=107 Identities=5% Similarity=-0.082 Sum_probs=70.1
Q ss_pred CCChhhhhccchhhccCCcEEEEEEECCChhHHHHHHHHHH---HHHHhC--CCCceEEEEEeCC-CCcccccCCHHHHH
Q 030225 48 TAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQ---ELQRQG--NPNLIMFLVANKV-DLEEKRKVKNEEGE 121 (181)
Q Consensus 48 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~---~~~~~~--~~~~p~ivi~nK~-D~~~~~~~~~~~~~ 121 (181)
.+|+...+.+|+.||.++|++|||+|++|.+.++ .+..+. .+.... ..+.|++|++||. |+.+ .....+..
T Consensus 109 ~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~--Ams~~EI~ 185 (227)
T 3l82_B 109 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK--RMPCFYLA 185 (227)
T ss_dssp --------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSC--BCCHHHHH
T ss_pred cCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccC--CCCHHHHH
Confidence 4588899999999999999999999999976543 444332 222221 2578999999995 6643 33334433
Q ss_pred HHHH----HcCCeEEEEecCCCCCHHHHHHHHHHHHHhhC
Q 030225 122 LYAQ----ENGLSFLETSAKSAHNVNELFYEIAKRLAEVN 157 (181)
Q Consensus 122 ~~~~----~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~ 157 (181)
.... .+.+.+..|||.+|+|+.+.++||.+.+..++
T Consensus 186 e~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~k~ 225 (227)
T 3l82_B 186 HELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESKR 225 (227)
T ss_dssp HHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTTTC-
T ss_pred HHcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHHhhc
Confidence 3211 24578999999999999999999987765443
No 196
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.58 E-value=2.2e-14 Score=112.80 Aligned_cols=104 Identities=19% Similarity=0.147 Sum_probs=71.1
Q ss_pred CCCchhHHHHHHhhCCCC----------------------CccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccc
Q 030225 1 MGTGKTSLVLRFVKGQFF----------------------DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLA 58 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~----------------------~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~ 58 (181)
.++|||||..+|+..... .+... |+++.+....+.+..++++|+||||+.+|....
T Consensus 40 vdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreR--GITI~s~~~~~~~~~~~iNlIDTPGHvDF~~Ev 117 (548)
T 3vqt_A 40 PDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERER--GISVTTSVMQFPYRDRVVNLLDTPGHQDFSEDT 117 (548)
T ss_dssp TTSSHHHHHHHHHHHTTCHHHHHHHHHC----------------------CTTTEEEEEETTEEEEEECCCCGGGCSHHH
T ss_pred CCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHC--CCcEeeceEEEEECCEEEEEEeCCCcHHHHHHH
Confidence 479999999999732211 11111 222223333444455789999999999999999
Q ss_pred hhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCc
Q 030225 59 PMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLE 110 (181)
Q Consensus 59 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~ 110 (181)
...++-+|++|+|+|+.++--.....-| ....++ +.|.++++||+|..
T Consensus 118 ~raL~~~DgAvlVvda~~GV~~qT~~v~-~~a~~~---~lp~i~fINK~Dr~ 165 (548)
T 3vqt_A 118 YRVLTAVDSALVVIDAAKGVEAQTRKLM-DVCRMR---ATPVMTFVNKMDRE 165 (548)
T ss_dssp HHHHHSCSEEEEEEETTTBSCHHHHHHH-HHHHHT---TCCEEEEEECTTSC
T ss_pred HHHHHhcCceEEEeecCCCcccccHHHH-HHHHHh---CCceEEEEecccch
Confidence 9999999999999999975443333333 444443 68999999999974
No 197
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.58 E-value=7e-15 Score=107.90 Aligned_cols=97 Identities=19% Similarity=0.164 Sum_probs=78.9
Q ss_pred hhhhhccchhhccCCcEEEEEEECCChh-HHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCC-HHHHHHHHHHcC
Q 030225 51 QERYHSLAPMYYRGAAAAVVVYDITSMD-SFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVK-NEEGELYAQENG 128 (181)
Q Consensus 51 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~-~~~~~~~~~~~~ 128 (181)
++.+..+.+.+++++|++++|+|++++. ++..+.+|+..+.. .++|+++|+||+|+.+..++. .++...+.+..+
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~---~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g 142 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY---FKVEPVIVFNKIDLLNEEEKKELERWISIYRDAG 142 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH---TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTT
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh---CCCCEEEEEEcccCCCccccHHHHHHHHHHHHCC
Confidence 5667778888999999999999999986 78888999887654 478999999999996543222 344556666778
Q ss_pred CeEEEEecCCCCCHHHHHHHHH
Q 030225 129 LSFLETSAKSAHNVNELFYEIA 150 (181)
Q Consensus 129 ~~~~~~Sa~~~~gi~~~~~~l~ 150 (181)
++++++||++++|++++++.+.
T Consensus 143 ~~~~~~SA~~g~gi~~L~~~l~ 164 (302)
T 2yv5_A 143 YDVLKVSAKTGEGIDELVDYLE 164 (302)
T ss_dssp CEEEECCTTTCTTHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHhhcc
Confidence 9999999999999999998764
No 198
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.56 E-value=5.4e-16 Score=116.23 Aligned_cols=108 Identities=12% Similarity=0.106 Sum_probs=64.9
Q ss_pred EEEEEEeCCChh-------------hhhccchhhccCCc-EEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeC
Q 030225 41 IKFDIWDTAGQE-------------RYHSLAPMYYRGAA-AAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANK 106 (181)
Q Consensus 41 ~~~~i~D~~G~~-------------~~~~~~~~~~~~~d-~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK 106 (181)
..+.||||||.. .+..+...|+.+++ ++++|.|++..-.-.. ++..+......+.|+++|+||
T Consensus 130 ~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~---~~~i~~~~~~~~~~~i~V~NK 206 (353)
T 2x2e_A 130 LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSD---ALKVAKEVDPQGQRTIGVITK 206 (353)
T ss_dssp CSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCH---HHHHHHHHCTTCTTEEEEEEC
T ss_pred CCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhH---HHHHHHHhCcCCCceEEEecc
Confidence 468999999952 34445566676555 5555666654221111 222233333357899999999
Q ss_pred CCCcccccCCHHHHHH--HHHHcC-CeEEEEecCCCCCHHHHHHHHHH
Q 030225 107 VDLEEKRKVKNEEGEL--YAQENG-LSFLETSAKSAHNVNELFYEIAK 151 (181)
Q Consensus 107 ~D~~~~~~~~~~~~~~--~~~~~~-~~~~~~Sa~~~~gi~~~~~~l~~ 151 (181)
+|+.+........... +....+ .+++.+||+++.|++++++++..
T Consensus 207 ~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 207 LDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp GGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred ccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 9986543322221111 000112 25678999999999999999976
No 199
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.55 E-value=2.7e-14 Score=102.59 Aligned_cols=113 Identities=15% Similarity=0.061 Sum_probs=70.1
Q ss_pred EEEEEEeCCChhhhhccch------hhccCCcEEEEEEECCCh---hHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcc
Q 030225 41 IKFDIWDTAGQERYHSLAP------MYYRGAAAAVVVYDITSM---DSFERAKKWVQELQRQGNPNLIMFLVANKVDLEE 111 (181)
Q Consensus 41 ~~~~i~D~~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~ 111 (181)
+.+.||||||......... ..+.+ +++++++|+... ..+.....+...... ..+.|+++++||+|+..
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~--~~~~p~~iv~NK~D~~~ 185 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDL--RLGATTIPALNKVDLLS 185 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHH--HHTSCEEEEECCGGGCC
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhc--ccCCCeEEEEecccccc
Confidence 5789999999876543322 24466 899999987643 222222211111111 13578999999999864
Q ss_pred cccC--------CHHHHH-H-----------------HHHHcC--CeEEEEecCCCCCHHHHHHHHHHHHHhh
Q 030225 112 KRKV--------KNEEGE-L-----------------YAQENG--LSFLETSAKSAHNVNELFYEIAKRLAEV 156 (181)
Q Consensus 112 ~~~~--------~~~~~~-~-----------------~~~~~~--~~~~~~Sa~~~~gi~~~~~~l~~~~~~~ 156 (181)
..+. ...... . ++.+++ .+++++||++++|+++++++|.+.+...
T Consensus 186 ~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~~ 258 (262)
T 1yrb_A 186 EEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYCTC 258 (262)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhccc
Confidence 3221 000000 0 123433 4799999999999999999999877653
No 200
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.54 E-value=8.3e-15 Score=120.43 Aligned_cols=70 Identities=21% Similarity=0.218 Sum_probs=58.5
Q ss_pred CCeEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCc
Q 030225 37 NEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLE 110 (181)
Q Consensus 37 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~ 110 (181)
++..+.++||||||+.+|...+..+++.+|++|+|+|++++.++.....|.... . .+.|+++++||+|+.
T Consensus 94 ~~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~-~---~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 94 DGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQAL-G---ERIKPVVVINKVDRA 163 (842)
T ss_dssp CSSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHH-H---TTCEEEEEEECHHHH
T ss_pred cCCCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH-H---cCCCeEEEEECCCcc
Confidence 345789999999999999999999999999999999999987777665554333 2 368999999999985
No 201
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.52 E-value=3.9e-15 Score=111.31 Aligned_cols=103 Identities=12% Similarity=0.074 Sum_probs=62.8
Q ss_pred EEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHH
Q 030225 41 IKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEG 120 (181)
Q Consensus 41 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~ 120 (181)
+.+.++||+|.... .......+|++++|+|++++.....+.. .+ ...|.++++||+|+.+.... ....
T Consensus 167 ~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i-----l~~~~ivVlNK~Dl~~~~~~-~~~~ 234 (349)
T 2www_A 167 YDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR---GI-----IEMADLVAVTKSDGDLIVPA-RRIQ 234 (349)
T ss_dssp CSEEEEECCCC--C---HHHHHTTCSEEEEEECCC--------------------CCSCSEEEECCCSGGGHHHH-HHHH
T ss_pred CCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH-----HhcCCEEEEeeecCCCchhH-HHHH
Confidence 46789999995311 2345678999999999987543221111 11 24578999999998542111 0111
Q ss_pred HHHHH----------HcCCeEEEEecCCCCCHHHHHHHHHHHHHh
Q 030225 121 ELYAQ----------ENGLSFLETSAKSAHNVNELFYEIAKRLAE 155 (181)
Q Consensus 121 ~~~~~----------~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~ 155 (181)
..+.. .++.+++.+||++++|+++++++|.+.+..
T Consensus 235 ~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~~ 279 (349)
T 2www_A 235 AEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQDL 279 (349)
T ss_dssp HHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 12211 124578999999999999999999887643
No 202
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.50 E-value=5.7e-15 Score=116.27 Aligned_cols=68 Identities=16% Similarity=0.256 Sum_probs=51.6
Q ss_pred EEEEEeCCChhh-----------hhccchhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCc
Q 030225 42 KFDIWDTAGQER-----------YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLE 110 (181)
Q Consensus 42 ~~~i~D~~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~ 110 (181)
.+.||||||... +...+..++..+|++++|+|+++.........|+..+.. .+.|+++|+||+|+.
T Consensus 155 ~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~---~~~pvilVlNK~Dl~ 231 (550)
T 2qpt_A 155 SISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG---HEDKIRVVLNKADMV 231 (550)
T ss_dssp HCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT---CGGGEEEEEECGGGS
T ss_pred CEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh---cCCCEEEEEECCCcc
Confidence 588999999764 445566778899999999999875555555666655532 357899999999986
Q ss_pred cc
Q 030225 111 EK 112 (181)
Q Consensus 111 ~~ 112 (181)
..
T Consensus 232 ~~ 233 (550)
T 2qpt_A 232 ET 233 (550)
T ss_dssp CH
T ss_pred CH
Confidence 53
No 203
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.48 E-value=6.9e-14 Score=104.88 Aligned_cols=51 Identities=22% Similarity=0.146 Sum_probs=35.9
Q ss_pred CceEEEEEeCCCCc--cc-ccCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHH
Q 030225 97 NLIMFLVANKVDLE--EK-RKVKNEEGELYAQENGLSFLETSAKSAHNVNELFY 147 (181)
Q Consensus 97 ~~p~ivi~nK~D~~--~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~ 147 (181)
.+|+++++||.|.. +. ..........+++..+.+++++||+.+.++.++.+
T Consensus 201 ~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g~~vv~iSAk~E~el~eL~~ 254 (368)
T 2dby_A 201 AKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGAEVVVVSARLEAELAELSG 254 (368)
T ss_dssp GSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHTCEEEEECHHHHHHHHTSCH
T ss_pred cCCeEEeccccHHhhcccchhhHHHHHHHHHHHcCCeEEEeechhHHHHHHhch
Confidence 47999999999842 21 12334566778888899999999988655554443
No 204
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.48 E-value=1.7e-14 Score=107.64 Aligned_cols=104 Identities=18% Similarity=0.095 Sum_probs=65.2
Q ss_pred EEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCH--
Q 030225 40 TIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKN-- 117 (181)
Q Consensus 40 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~-- 117 (181)
.+.+.||||||...... .....+|++++|+|+++.+.+..+.. .. .+.|.++++||+|+.+......
T Consensus 148 ~~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~~---~~-----~~~p~ivv~NK~Dl~~~~~~~~~~ 216 (341)
T 2p67_A 148 GYDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKK---GL-----MEVADLIVINKDDGDNHTNVAIAR 216 (341)
T ss_dssp TCSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCH---HH-----HHHCSEEEECCCCTTCHHHHHHHH
T ss_pred CCCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHHH---hh-----hcccCEEEEECCCCCChHHHHHHH
Confidence 35789999999654332 24688999999999976543221111 00 1357899999999854322110
Q ss_pred HHHHHHHHHc-------CCeEEEEecCCCCCHHHHHHHHHHHHH
Q 030225 118 EEGELYAQEN-------GLSFLETSAKSAHNVNELFYEIAKRLA 154 (181)
Q Consensus 118 ~~~~~~~~~~-------~~~~~~~Sa~~~~gi~~~~~~l~~~~~ 154 (181)
.+........ ..+++++||++|+|+++++++|.+.+.
T Consensus 217 ~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 217 HMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp HHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 1111111121 357899999999999999999998765
No 205
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.47 E-value=7.7e-15 Score=117.47 Aligned_cols=106 Identities=16% Similarity=0.158 Sum_probs=73.7
Q ss_pred CCCchhHHHHHHhhCCCCCc------c----cc------ceeeeEEEEEEEECCeEEEEEEEeCCChhhhhccchhhccC
Q 030225 1 MGTGKTSLVLRFVKGQFFDF------Q----ES------TIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 64 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~------~----~~------t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 64 (181)
.++|||||..+|+....... . .. --|+++.+....+.+..++++|+|||||.+|.......++-
T Consensus 11 vD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~Ev~raL~~ 90 (638)
T 3j25_A 11 VDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLAEVYRSLSV 90 (638)
T ss_dssp STTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHHHHHHHHHH
Confidence 36899999999974211100 0 00 01344444455566667789999999999999999999999
Q ss_pred CcEEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCc
Q 030225 65 AAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLE 110 (181)
Q Consensus 65 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~ 110 (181)
+|++|+|+|+..+-.... ...+...... +.|.++++||+|..
T Consensus 91 ~DgavlVVDa~~GV~~qT-~~v~~~a~~~---~lp~i~~INKmDr~ 132 (638)
T 3j25_A 91 LDGAILLISAKDGVQAQT-RILFHALRKM---GIPTIFFINKIDQN 132 (638)
T ss_dssp CSEEECCEESSCTTCSHH-HHHHHHHHHH---TCSCEECCEECCSS
T ss_pred hCEEEEEEeCCCCCcHHH-HHHHHHHHHc---CCCeEEEEeccccc
Confidence 999999999987533222 3334444444 56888999999974
No 206
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=99.47 E-value=2.3e-14 Score=102.77 Aligned_cols=106 Identities=6% Similarity=-0.085 Sum_probs=73.9
Q ss_pred CCChhhhhccchhhccCCcEEEEEEECCChhHHHHHHHHH----HHHHHh-CCCCceEEEEEeC-CCCcccccCCHHHHH
Q 030225 48 TAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWV----QELQRQ-GNPNLIMFLVANK-VDLEEKRKVKNEEGE 121 (181)
Q Consensus 48 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~----~~~~~~-~~~~~p~ivi~nK-~D~~~~~~~~~~~~~ 121 (181)
.+|+...+.+|+.|+.++|++|||+|++|.+.++ ....+ ..+.+. ...+.|++|++|| .|+.+. ....+..
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~A--ms~~EI~ 270 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR--MPCFYLA 270 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCB--CCHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCC--CCHHHHH
Confidence 4688899999999999999999999999987644 33222 222222 1367899999997 577432 3333333
Q ss_pred HHHH----HcCCeEEEEecCCCCCHHHHHHHHHHHHHhh
Q 030225 122 LYAQ----ENGLSFLETSAKSAHNVNELFYEIAKRLAEV 156 (181)
Q Consensus 122 ~~~~----~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~ 156 (181)
+... .+.+.+..|||.+|+|+.+.++||.+.+..+
T Consensus 271 e~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~k 309 (312)
T 3l2o_B 271 HELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESK 309 (312)
T ss_dssp HHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSCC-
T ss_pred HHcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHHhh
Confidence 2211 2456799999999999999999999877544
No 207
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.40 E-value=5.6e-12 Score=94.60 Aligned_cols=144 Identities=12% Similarity=0.052 Sum_probs=86.0
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhh----hccc---hhhccCCcEEEEEEE
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERY----HSLA---PMYYRGAAAAVVVYD 73 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----~~~~---~~~~~~~d~~i~v~d 73 (181)
||||||||+|+|.+........|..+.+...-.+.+++. ++.++|+||-... ..+. ...++++|++++|+|
T Consensus 81 PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~--~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad~il~vvD 158 (376)
T 4a9a_A 81 PSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGA--KIQMLDLPGIIDGAKDGRGRGKQVIAVARTCNLLFIILD 158 (376)
T ss_dssp CCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTE--EEEEEECGGGCCC-----CHHHHHHHHHHHCSEEEEEEE
T ss_pred CCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCc--EEEEEeCCCccCCchhhhHHHHHHHHHHHhcCccccccc
Confidence 899999999999987654433344444444445555554 6789999995321 1111 234678999999999
Q ss_pred CCChhH-HHHHHHHHHHHHHhCCCCceEEEEEeCCCCcc--------cccCCHHHHHHHHHHcCCeEEEEecCCCCCHHH
Q 030225 74 ITSMDS-FERAKKWVQELQRQGNPNLIMFLVANKVDLEE--------KRKVKNEEGELYAQENGLSFLETSAKSAHNVNE 144 (181)
Q Consensus 74 ~~~~~s-~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~--------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 144 (181)
++++.. .+.+...+..+.. ....+|.++++||.|... ......++...+...+.+..-.+-...+...++
T Consensus 159 ~~~p~~~~~~i~~EL~~~~~-~l~~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~~lt~kpv~~~~nv~edd 237 (376)
T 4a9a_A 159 VNKPLHHKQIIEKELEGVGI-RLNKTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYRINSAEIAFRCDATVDD 237 (376)
T ss_dssp TTSHHHHHHHHHHHHHHTTE-EETCCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHTTCCSEEEEECSCCCHHH
T ss_pred cCccHHHHHHHHHHHHHhhH-hhccCChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHhcccCCCeeecccCCHHH
Confidence 998743 2223333322211 124678888999999742 233455666666666555333333334444555
Q ss_pred HHH
Q 030225 145 LFY 147 (181)
Q Consensus 145 ~~~ 147 (181)
+.+
T Consensus 238 l~d 240 (376)
T 4a9a_A 238 LID 240 (376)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 208
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.36 E-value=1.3e-11 Score=100.17 Aligned_cols=67 Identities=19% Similarity=0.150 Sum_probs=53.2
Q ss_pred eEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCC
Q 030225 39 VTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDL 109 (181)
Q Consensus 39 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~ 109 (181)
..+.++++|||||.+|.......++-+|++|+|+|+..+--... +..+...... +.|.++++||+|.
T Consensus 83 ~~~~iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT-~~v~~~a~~~---~lp~i~~iNKiDr 149 (709)
T 4fn5_A 83 DNYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQS-ETVWRQANKY---GVPRIVYVNKMDR 149 (709)
T ss_dssp CCEEEEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHH-HHHHHHHHHH---TCCEEEEEECSSS
T ss_pred CCEEEEEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhH-HHHHHHHHHc---CCCeEEEEccccc
Confidence 36899999999999999999999999999999999986533333 2333444343 5789999999997
No 209
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.36 E-value=5.5e-13 Score=99.21 Aligned_cols=104 Identities=13% Similarity=0.103 Sum_probs=63.1
Q ss_pred EEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHH
Q 030225 40 TIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEE 119 (181)
Q Consensus 40 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~ 119 (181)
.+.+.|+||+|..... ......+|++++++|....+....+... +. ..+.++++||+|+..........
T Consensus 147 ~~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~~~---i~-----~~~~ivvlNK~Dl~~~~~~s~~~ 215 (337)
T 2qm8_A 147 GFDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKKG---IF-----ELADMIAVNKADDGDGERRASAA 215 (337)
T ss_dssp TCCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCTT---HH-----HHCSEEEEECCSTTCCHHHHHHH
T ss_pred CCCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHHHH---Hh-----ccccEEEEEchhccCchhHHHHH
Confidence 3578899999964321 2345789999999998754332111111 11 23557777999974322211112
Q ss_pred HHHHHHH----------cCCeEEEEecCCCCCHHHHHHHHHHHHH
Q 030225 120 GELYAQE----------NGLSFLETSAKSAHNVNELFYEIAKRLA 154 (181)
Q Consensus 120 ~~~~~~~----------~~~~~~~~Sa~~~~gi~~~~~~l~~~~~ 154 (181)
...+... ++.+++.+||+++.|++++++.|.+...
T Consensus 216 ~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 216 ASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp HHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 2222221 1457899999999999999999988765
No 210
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.30 E-value=4.3e-12 Score=102.55 Aligned_cols=108 Identities=15% Similarity=0.150 Sum_probs=67.4
Q ss_pred EEEEEeCCChhh-------------hhccchhhc-cCCcEEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCC
Q 030225 42 KFDIWDTAGQER-------------YHSLAPMYY-RGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKV 107 (181)
Q Consensus 42 ~~~i~D~~G~~~-------------~~~~~~~~~-~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~ 107 (181)
.+.|+||||-.. ...+...|+ ..+|++++|+|+++...-.+...++..+ ...+.|+++|+||+
T Consensus 151 qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L---~~~g~pvIlVlNKi 227 (772)
T 3zvr_A 151 NLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEV---DPQGQRTIGVITKL 227 (772)
T ss_dssp SEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHH---CTTCSSEEEEEECT
T ss_pred ceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHH---HhcCCCEEEEEeCc
Confidence 478999999432 222333344 6889999999998643222222233333 23468999999999
Q ss_pred CCcccccCCHHHHHH-H-HHHcC-CeEEEEecCCCCCHHHHHHHHHHH
Q 030225 108 DLEEKRKVKNEEGEL-Y-AQENG-LSFLETSAKSAHNVNELFYEIAKR 152 (181)
Q Consensus 108 D~~~~~~~~~~~~~~-~-~~~~~-~~~~~~Sa~~~~gi~~~~~~l~~~ 152 (181)
|+.+........... . ....+ .+++.+||++|.|++++++.+.+.
T Consensus 228 Dlv~~~~~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e 275 (772)
T 3zvr_A 228 DLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 275 (772)
T ss_dssp TSSCTTCCSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred ccCCcchhhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence 997544332221110 0 00012 256788999999999999999874
No 211
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.18 E-value=1.3e-11 Score=93.09 Aligned_cols=79 Identities=9% Similarity=-0.054 Sum_probs=41.6
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCe---------------EEEEEEEeCCChhhhhc-------cc
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEV---------------TIKFDIWDTAGQERYHS-------LA 58 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~~~~-------~~ 58 (181)
||||||||+|+|.+........|..+.+.....+.+++. ...+.+||+||...+.. .+
T Consensus 31 pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~as~~~glg~~~ 110 (396)
T 2ohf_A 31 PNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGAHNGQGLGNAF 110 (396)
T ss_dssp SSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-----------CCHH
T ss_pred CCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccccchhhHHHHHH
Confidence 799999999999987653333333333333333334332 23589999999865443 34
Q ss_pred hhhccCCcEEEEEEECCChhH
Q 030225 59 PMYYRGAAAAVVVYDITSMDS 79 (181)
Q Consensus 59 ~~~~~~~d~~i~v~d~~~~~s 79 (181)
..+++++|++++|+|+++.++
T Consensus 111 l~~ir~aD~Il~VvD~~~~~~ 131 (396)
T 2ohf_A 111 LSHISACDGIFHLTRAFEDDD 131 (396)
T ss_dssp HHHHHTSSSEEEEEEC-----
T ss_pred HHHHHhcCeEEEEEecCCCcc
Confidence 566889999999999986433
No 212
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.16 E-value=1.1e-10 Score=87.88 Aligned_cols=97 Identities=26% Similarity=0.299 Sum_probs=73.0
Q ss_pred ChhhhhccchhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHH----HHH
Q 030225 50 GQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGEL----YAQ 125 (181)
Q Consensus 50 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~----~~~ 125 (181)
..+.|+.++..+.+.++++++|+|++|+. ..|...+.+.. .++|+++|+||+|+... ....+.... +++
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~-~~~p~ilV~NK~DL~~~-~~~~~~~~~~l~~~~~ 127 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFV-GNNKVLLVGNKADLIPK-SVKHDKVKHWMRYSAK 127 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHS-SSSCEEEEEECGGGSCT-TSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHh-CCCcEEEEEEChhcCCc-ccCHHHHHHHHHHHHH
Confidence 35678888899999999999999999864 34555555543 47899999999999653 223333333 355
Q ss_pred HcCC---eEEEEecCCCCCHHHHHHHHHHHH
Q 030225 126 ENGL---SFLETSAKSAHNVNELFYEIAKRL 153 (181)
Q Consensus 126 ~~~~---~~~~~Sa~~~~gi~~~~~~l~~~~ 153 (181)
..++ .++.+||++|.|++++++.|.+..
T Consensus 128 ~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~ 158 (368)
T 3h2y_A 128 QLGLKPEDVFLISAAKGQGIAELADAIEYYR 158 (368)
T ss_dssp HTTCCCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HcCCCcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence 6677 799999999999999999997654
No 213
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.15 E-value=9.3e-10 Score=83.10 Aligned_cols=76 Identities=12% Similarity=0.026 Sum_probs=48.0
Q ss_pred CCCchhHHHHHHhhCCC-CCccccceeeeEEEEEEEECCe---------------EEEEEEEeCCChhhhh-------cc
Q 030225 1 MGTGKTSLVLRFVKGQF-FDFQESTIGAAFFTQVLSLNEV---------------TIKFDIWDTAGQERYH-------SL 57 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~~~-------~~ 57 (181)
||||||||+|+|.+... .....|..+.+...-.+.+.+. ...+.+||+||..... ..
T Consensus 29 pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~~s~~e~L~~~ 108 (392)
T 1ni3_A 29 PNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGASTGVGLGNA 108 (392)
T ss_dssp SSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCCCCSSSSSCHH
T ss_pred CCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccCCcHHHHHHHH
Confidence 79999999999999665 3323333332222233344431 1357899999954211 12
Q ss_pred chhhccCCcEEEEEEECCC
Q 030225 58 APMYYRGAAAAVVVYDITS 76 (181)
Q Consensus 58 ~~~~~~~~d~~i~v~d~~~ 76 (181)
....++.+|++++|+|+.+
T Consensus 109 fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 109 FLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp HHHHHTTCSEEEEEEECCC
T ss_pred HHHHHHHHHHHHHHHhccc
Confidence 3345688999999999874
No 214
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=99.05 E-value=3.5e-10 Score=82.11 Aligned_cols=101 Identities=13% Similarity=0.056 Sum_probs=69.9
Q ss_pred EEeCCChh-hhhccchhhccCCcEEEEEEECCChhHHH--HHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHH
Q 030225 45 IWDTAGQE-RYHSLAPMYYRGAAAAVVVYDITSMDSFE--RAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGE 121 (181)
Q Consensus 45 i~D~~G~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~ 121 (181)
|-..|||. .........+.++|+++.|+|+.++.+.. .+..|+ .++|.++++||+|+.+... .+...
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--------~~kp~ilVlNK~DL~~~~~--~~~~~ 72 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--------KNKPRIMLLNKADKADAAV--TQQWK 72 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--------SSSCEEEEEECGGGSCHHH--HHHHH
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--------CCCCEEEEEECcccCCHHH--HHHHH
Confidence 44588986 44445566789999999999999987653 333332 4789999999999965211 12223
Q ss_pred HHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHh
Q 030225 122 LYAQENGLSFLETSAKSAHNVNELFYEIAKRLAE 155 (181)
Q Consensus 122 ~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~ 155 (181)
.+.++.+++++.+||+++.|++++++.+.+.+..
T Consensus 73 ~~~~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~~ 106 (282)
T 1puj_A 73 EHFENQGIRSLSINSVNGQGLNQIVPASKEILQE 106 (282)
T ss_dssp HHHHTTTCCEEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred HHHHhcCCcEEEEECCCcccHHHHHHHHHHHHHH
Confidence 4444557899999999999999999998887654
No 215
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.01 E-value=4.4e-10 Score=84.58 Aligned_cols=97 Identities=23% Similarity=0.250 Sum_probs=71.3
Q ss_pred ChhhhhccchhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHH----HHH
Q 030225 50 GQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGEL----YAQ 125 (181)
Q Consensus 50 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~----~~~ 125 (181)
.++.|+.....++..++++++|+|++|+.+ .|...+.+.. .++|+++|+||+|+... ....+.... +++
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l-~~~piilV~NK~DLl~~-~~~~~~~~~~l~~~~~ 129 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFA-ADNPILLVGNKADLLPR-SVKYPKLLRWMRRMAE 129 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHC-TTSCEEEEEECGGGSCT-TCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHh-CCCCEEEEEEChhcCCC-ccCHHHHHHHHHHHHH
Confidence 467888888888899999999999999764 3434444432 47899999999998653 222333333 355
Q ss_pred HcCC---eEEEEecCCCCCHHHHHHHHHHHH
Q 030225 126 ENGL---SFLETSAKSAHNVNELFYEIAKRL 153 (181)
Q Consensus 126 ~~~~---~~~~~Sa~~~~gi~~~~~~l~~~~ 153 (181)
..++ .++.+||++|.|++++++.+.+..
T Consensus 130 ~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~ 160 (369)
T 3ec1_A 130 ELGLCPVDVCLVSAAKGIGMAKVMEAINRYR 160 (369)
T ss_dssp TTTCCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred HcCCCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence 5676 689999999999999999997654
No 216
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.74 E-value=7e-10 Score=83.47 Aligned_cols=133 Identities=15% Similarity=0.147 Sum_probs=75.6
Q ss_pred CCCchhHHHHHHhhC-----CCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhcc--------chhhc--cCC
Q 030225 1 MGTGKTSLVLRFVKG-----QFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSL--------APMYY--RGA 65 (181)
Q Consensus 1 ~~~GKttLl~~l~~~-----~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~~--~~~ 65 (181)
||+|||||+|+|++. ... ...+..|++.....+.++.. +.++||||-.....+ ...++ +..
T Consensus 171 ~nvGKStliN~L~~~~~~~~~~~-~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i 246 (369)
T 3ec1_A 171 TNVGKSTFINRIIEEATGKGNVI-TTSYFPGTTLDMIEIPLESG---ATLYDTPGIINHHQMAHFVDARDLKIITPKREI 246 (369)
T ss_dssp TTSSHHHHHHHHHHHHHHTTCCC-EEEECTTSSCEEEEEECSTT---CEEEECCSCCCCSSGGGGSCTTTHHHHSCSSCC
T ss_pred CCCchHHHHHHHHhhccCCccce-eecCCCCeEEeeEEEEeCCC---eEEEeCCCcCcHHHHHHHHhHHHHHHHhccccc
Confidence 799999999999975 211 11223344444555555543 679999995322211 11222 678
Q ss_pred cEEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEecCCCCCH
Q 030225 66 AAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNV 142 (181)
Q Consensus 66 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 142 (181)
+.++++++....-.+..+.+ +......+.|+++++||.|....... ......+.+..+..+...++.+..++
T Consensus 247 ~~~~~~l~~~~~~~~g~l~~----l~~l~~~~~~~~~v~~k~d~~~~~~~-~~~~~~~~~~~g~~l~p~~~~~~~~~ 318 (369)
T 3ec1_A 247 HPRVYQLNEGQTLFFGGLAR----LDYIKGGRRSFVCYMANELTVHRTKL-EKADSLYANQLGELLSPPSKRYAAEF 318 (369)
T ss_dssp CCEEEEECTTEEEEETTTEE----EEEEESSSEEEEEEECTTSCEEEEEG-GGHHHHHHHHBTTTBCSSCGGGTTTC
T ss_pred CceEEEEcCCceEEECCEEE----EEEccCCCceEEEEecCCcccccccH-HHHHHHHHHhcCCccCCCCchhhhhc
Confidence 99999999842210000000 11112356899999999998654433 23344566666766655555554443
No 217
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.72 E-value=5.1e-10 Score=84.17 Aligned_cols=127 Identities=14% Similarity=0.140 Sum_probs=69.1
Q ss_pred CCCchhHHHHHHhhCCC-----CCccccceeeeEEEEEEEECCeEEEEEEEeCCChhhhhcc----c----hhh--ccCC
Q 030225 1 MGTGKTSLVLRFVKGQF-----FDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSL----A----PMY--YRGA 65 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~-----~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~----~----~~~--~~~~ 65 (181)
||+|||||+|+|++... .....+..|++.....+.+... +.++||||-.....+ . ..+ .+..
T Consensus 169 ~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i 245 (368)
T 3h2y_A 169 TNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEE---SSLYDTPGIINHHQMAHYVGKQSLKLITPTKEI 245 (368)
T ss_dssp TTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSS---CEEEECCCBCCTTSGGGGSCHHHHHHHSCSSCC
T ss_pred CCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCC---eEEEeCCCcCcHHHHHHHhhHHHHHHhcccccc
Confidence 79999999999997531 1112334455555555555544 679999996332211 1 111 3677
Q ss_pred cEEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHcCCeEEEEe
Q 030225 66 AAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETS 135 (181)
Q Consensus 66 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S 135 (181)
+..+++++....-.+..+.. +......+.|+++++||.|....... ......+.+..+..+...+
T Consensus 246 ~~~~~~l~~~~~~~~g~l~~----~d~l~~~~~~~~~v~nk~d~~~~~~~-~~~~~~~~~~~g~~l~p~~ 310 (368)
T 3h2y_A 246 KPMVFQLNEEQTLFFSGLAR----FDYVSGGRRAFTCHFSNRLTIHRTKL-EKADELYKNHAGDLLSPPT 310 (368)
T ss_dssp CCEEEEECTTEEEEETTTEE----EEEEESSSEEEEEEECTTSCEEEEEH-HHHHHHHHHHBTTTBCSSC
T ss_pred CceEEEEcCCCEEEEcceEE----EEEecCCCceEEEEecCccccccccH-HHHHHHHHHHhCCccCCCc
Confidence 88899988742110000000 11112356899999999998653332 2333445555565444333
No 218
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.69 E-value=2.8e-09 Score=82.91 Aligned_cols=102 Identities=14% Similarity=0.080 Sum_probs=60.8
Q ss_pred EEEEEEEeCCChhhhh-ccch---hh--ccCCcEEEEEEECCChhHHHHHHHHHHHHHHhCCCCceE-EEEEeCCCCccc
Q 030225 40 TIKFDIWDTAGQERYH-SLAP---MY--YRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIM-FLVANKVDLEEK 112 (181)
Q Consensus 40 ~~~~~i~D~~G~~~~~-~~~~---~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-ivi~nK~D~~~~ 112 (181)
.+.+.|+||||..... .++. .. +..+|.+++|+|+...... ......+.. ..|+ .+|+||.|....
T Consensus 183 ~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~---~~~a~~~~~----~~~i~gvVlNK~D~~~~ 255 (504)
T 2j37_W 183 NFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQAC---EAQAKAFKD----KVDVASVIVTKLDGHAK 255 (504)
T ss_dssp TCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTH---HHHHHHHHH----HHCCCCEEEECTTSCCC
T ss_pred CCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccH---HHHHHHHHh----hcCceEEEEeCCccccc
Confidence 3578899999964321 1111 11 2278999999999865331 112222222 1464 888999997532
Q ss_pred ccCCHHHHHHHHHHcCCeE------------------EEEecCCCCC-HHHHHHHHHHH
Q 030225 113 RKVKNEEGELYAQENGLSF------------------LETSAKSAHN-VNELFYEIAKR 152 (181)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~------------------~~~Sa~~~~g-i~~~~~~l~~~ 152 (181)
.. .........+.|+ +.+|+..|.| +.++++++.+.
T Consensus 256 ~g----~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 256 GG----GALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp CT----HHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred hH----HHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 11 1222333445543 3468889999 99999998765
No 219
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.64 E-value=1.2e-08 Score=73.20 Aligned_cols=93 Identities=15% Similarity=0.066 Sum_probs=61.0
Q ss_pred CCChhhh-hccchhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHH
Q 030225 48 TAGQERY-HSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQE 126 (181)
Q Consensus 48 ~~G~~~~-~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~~~~~~~ 126 (181)
.|||... .......+.++|+++.|+|+.++.+..... +. + . ++|.++++||+|+.+... .+....+.+.
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~--l~-l----l-~k~~iivlNK~DL~~~~~--~~~~~~~~~~ 73 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG--VD-F----S-RKETIILLNKVDIADEKT--TKKWVEFFKK 73 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT--SC-C----T-TSEEEEEEECGGGSCHHH--HHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH--HH-h----c-CCCcEEEEECccCCCHHH--HHHHHHHHHH
Confidence 5787632 234456789999999999999886653210 11 1 1 689999999999965211 1222344555
Q ss_pred cCCeEEEEecCCCCCHHHHHHHHHH
Q 030225 127 NGLSFLETSAKSAHNVNELFYEIAK 151 (181)
Q Consensus 127 ~~~~~~~~Sa~~~~gi~~~~~~l~~ 151 (181)
.+.++ .+||+++.|++++++.+..
T Consensus 74 ~g~~v-~iSa~~~~gi~~L~~~l~~ 97 (262)
T 3cnl_A 74 QGKRV-ITTHKGEPRKVLLKKLSFD 97 (262)
T ss_dssp TTCCE-EECCTTSCHHHHHHHHCCC
T ss_pred cCCeE-EEECCCCcCHHHHHHHHHH
Confidence 67888 9999999999999887754
No 220
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.48 E-value=1.3e-06 Score=66.42 Aligned_cols=150 Identities=15% Similarity=0.135 Sum_probs=75.8
Q ss_pred CCCchhHHHHHHhhCCCCCccccce-ee--eEEEEEEEECCeEEEEEEEeCCChhhhhcc-----chhhccCCcEEEEEE
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTI-GA--AFFTQVLSLNEVTIKFDIWDTAGQERYHSL-----APMYYRGAAAAVVVY 72 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~-~~--~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-----~~~~~~~~d~~i~v~ 72 (181)
+|||||||+|.+.+...+..-.-++ +. +......... ..-.+.+||++|-...... ...-+.+.+..++ +
T Consensus 78 nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~-~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~~~~~~~-l 155 (413)
T 1tq4_A 78 TGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHP-NIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFII-I 155 (413)
T ss_dssp TTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECS-SCTTEEEEECCCGGGSSCCHHHHHHHTTGGGCSEEEE-E
T ss_pred CCCcHHHHHHHHhCCCCccCceEEECCeecceeEEecccc-ccCCeeehHhhcccchHHHHHHHHHHcCCCccCCeEE-e
Confidence 6999999999999832211100000 10 0111111111 1114789999985321111 1112334455555 7
Q ss_pred ECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCc-------ccccCCHHHH----HHHH----HHcC---CeEEEE
Q 030225 73 DITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLE-------EKRKVKNEEG----ELYA----QENG---LSFLET 134 (181)
Q Consensus 73 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~-------~~~~~~~~~~----~~~~----~~~~---~~~~~~ 134 (181)
|...+.. .-..+...+.. .+.|++++.||.|+. .-+.....+. ..+. .+.+ ..++.+
T Consensus 156 S~G~~~k--qrv~la~aL~~---~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iili 230 (413)
T 1tq4_A 156 SATRFKK--NDIDIAKAISM---MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLL 230 (413)
T ss_dssp ESSCCCH--HHHHHHHHHHH---TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEEC
T ss_pred CCCCccH--HHHHHHHHHHh---cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEE
Confidence 7652111 11112222222 357999999999963 1112222322 2222 1222 357889
Q ss_pred ec--CCCCCHHHHHHHHHHHHHhhC
Q 030225 135 SA--KSAHNVNELFYEIAKRLAEVN 157 (181)
Q Consensus 135 Sa--~~~~gi~~~~~~l~~~~~~~~ 157 (181)
|+ .++.|++++.+.+.+.+.+.+
T Consensus 231 Ssh~l~~~~~e~L~d~I~~~Lpeg~ 255 (413)
T 1tq4_A 231 SNKNVCHYDFPVLMDKLISDLPIYK 255 (413)
T ss_dssp CTTCTTSTTHHHHHHHHHHHSCGGG
T ss_pred ecCcCCccCHHHHHHHHHHhCccch
Confidence 99 556679999999988775543
No 221
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.42 E-value=3.2e-07 Score=69.86 Aligned_cols=132 Identities=14% Similarity=0.134 Sum_probs=61.3
Q ss_pred CCCchhHHHHHHhhCCCCCcccc--ceeeeEEEEEEEEC--CeEEEEEEEeCCChhhh-------h-----------ccc
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQES--TIGAAFFTQVLSLN--EVTIKFDIWDTAGQERY-------H-----------SLA 58 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~--t~~~~~~~~~~~~~--~~~~~~~i~D~~G~~~~-------~-----------~~~ 58 (181)
+|+|||||++.|.+..+...... ..+.......+... +....+.++|++|-... . ...
T Consensus 51 nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L 130 (427)
T 2qag_B 51 TGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYL 130 (427)
T ss_dssp TTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHHHHHHHHHHH
Confidence 69999999999998653221111 11222222222222 22346889999874211 0 000
Q ss_pred hh---------hccCC--c-EEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccC--CHHHHHHHH
Q 030225 59 PM---------YYRGA--A-AAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKV--KNEEGELYA 124 (181)
Q Consensus 59 ~~---------~~~~~--d-~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~--~~~~~~~~~ 124 (181)
.. .+.++ | ++.|+.|...+-+..+ ... +.... .++|++++.||+|.....+. ........+
T Consensus 131 ~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D-iei---lk~L~-~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L 205 (427)
T 2qag_B 131 QEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD-LVT---MKKLD-SKVNIIPIIAKADAISKSELTKFKIKITSEL 205 (427)
T ss_dssp HHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH-HHH---HHHTC-SCSEEEEEESCGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH-HHH---HHHHh-hCCCEEEEEcchhccchHHHHHHHHHHHHHH
Confidence 11 11222 2 3555666553322221 122 22222 57899999999997543221 111222223
Q ss_pred HHcCCeEEEEecC
Q 030225 125 QENGLSFLETSAK 137 (181)
Q Consensus 125 ~~~~~~~~~~Sa~ 137 (181)
...|++++.+|.-
T Consensus 206 ~~~gi~I~~is~~ 218 (427)
T 2qag_B 206 VSNGVQIYQFPTD 218 (427)
T ss_dssp BTTBCCCCCCC--
T ss_pred HHcCCcEEecCCC
Confidence 3457788777753
No 222
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.40 E-value=9.6e-08 Score=69.91 Aligned_cols=90 Identities=13% Similarity=0.129 Sum_probs=60.7
Q ss_pred ccchhhccCCcEEEEEEECCChhH-HHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccC--CHHHHHHHHHHcCCeEE
Q 030225 56 SLAPMYYRGAAAAVVVYDITSMDS-FERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKV--KNEEGELYAQENGLSFL 132 (181)
Q Consensus 56 ~~~~~~~~~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~ 132 (181)
.+.+..+.++|.+++|+|+.+|.. ...+.+++..... .++|.++++||+|+.+..+. ..+....+....|.+++
T Consensus 78 ~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~---~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~ 154 (307)
T 1t9h_A 78 ELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA---NDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVY 154 (307)
T ss_dssp EETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT---TTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEE
T ss_pred hhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEE
Confidence 344557899999999999987654 3344554433322 46788999999999653220 01233344445688999
Q ss_pred EEecCCCCCHHHHHHH
Q 030225 133 ETSAKSAHNVNELFYE 148 (181)
Q Consensus 133 ~~Sa~~~~gi~~~~~~ 148 (181)
.+||.++.|++++++.
T Consensus 155 ~~sa~~~~g~~~L~~~ 170 (307)
T 1t9h_A 155 LTSSKDQDSLADIIPH 170 (307)
T ss_dssp ECCHHHHTTCTTTGGG
T ss_pred EEecCCCCCHHHHHhh
Confidence 9999999888766554
No 223
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.29 E-value=8e-07 Score=64.00 Aligned_cols=66 Identities=12% Similarity=0.074 Sum_probs=35.8
Q ss_pred cCCcEEEEEEECCC-hhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccC--CHHHHHHHHHHcCCeEEE
Q 030225 63 RGAAAAVVVYDITS-MDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKV--KNEEGELYAQENGLSFLE 133 (181)
Q Consensus 63 ~~~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~ 133 (181)
..+++.++++|... +-.-.. ...+..+.. . .+++++++|+|.....+. ...........+++.++.
T Consensus 110 aRal~~lllldep~~gL~~lD-~~~l~~L~~---~-~~vI~Vi~K~D~lt~~e~~~~k~~i~~~l~~~~i~i~~ 178 (270)
T 3sop_A 110 TRVHCCLYFISPTGHSLRPLD-LEFMKHLSK---V-VNIIPVIAKADTMTLEEKSEFKQRVRKELEVNGIEFYP 178 (270)
T ss_dssp CSCCEEEEEECCCSSSCCHHH-HHHHHHHHT---T-SEEEEEETTGGGSCHHHHHHHHHHHHHHHHHTTCCCSS
T ss_pred heeeeeeEEEecCCCcCCHHH-HHHHHHHHh---c-CcEEEEEeccccCCHHHHHHHHHHHHHHHHHcCccccC
Confidence 34688889998552 211111 222333322 2 799999999997543221 122333445566776654
No 224
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.17 E-value=7.8e-06 Score=61.02 Aligned_cols=85 Identities=15% Similarity=0.164 Sum_probs=55.7
Q ss_pred hccCCcEEEEEEECCChhH-HHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCC-HHHHHHHHHHcCCeEEEEecCC
Q 030225 61 YYRGAAAAVVVYDITSMDS-FERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVK-NEEGELYAQENGLSFLETSAKS 138 (181)
Q Consensus 61 ~~~~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~~~Sa~~ 138 (181)
...++|.+++|.+. +|.. ...+.+++...... ++|.++++||+|+.+..... .++........|++++.+||.+
T Consensus 127 i~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~~~---~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~ 202 (358)
T 2rcn_A 127 IAANIDQIVIVSAI-LPELSLNIIDRYLVGCETL---QVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHT 202 (358)
T ss_dssp EEECCCEEEEEEES-TTTCCHHHHHHHHHHHHHH---TCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTT
T ss_pred HHhcCCEEEEEEeC-CCCCCHHHHHHHHHHHHhc---CCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCC
Confidence 46889999988665 4543 34455555444333 56789999999996532200 1112233345688999999999
Q ss_pred CCCHHHHHHHH
Q 030225 139 AHNVNELFYEI 149 (181)
Q Consensus 139 ~~gi~~~~~~l 149 (181)
+.|++++...+
T Consensus 203 ~~gl~~L~~~~ 213 (358)
T 2rcn_A 203 QDGLKPLEEAL 213 (358)
T ss_dssp TBTHHHHHHHH
T ss_pred CcCHHHHHHhc
Confidence 99999887643
No 225
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.14 E-value=5.5e-07 Score=64.58 Aligned_cols=49 Identities=22% Similarity=0.192 Sum_probs=28.4
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhh
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 53 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 53 (181)
||+|||||+|+|.+..... ..++.|++.....+..+. .+.+|||||...
T Consensus 108 ~~vGKSslin~l~~~~~~~-~~~~~g~T~~~~~~~~~~---~~~l~DtpG~~~ 156 (262)
T 3cnl_A 108 PNTGKSTIINKLKGKRASS-VGAQPGITKGIQWFSLEN---GVKILDTPGILY 156 (262)
T ss_dssp TTSSHHHHHHHHHTTCC-----------CCSCEEECTT---SCEEESSCEECC
T ss_pred CCCCHHHHHHHHhcccccc-cCCCCCCccceEEEEeCC---CEEEEECCCccc
Confidence 7999999999999876533 234455544333333332 467999999653
No 226
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.13 E-value=1.3e-06 Score=63.22 Aligned_cols=48 Identities=21% Similarity=0.313 Sum_probs=26.8
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChh
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 52 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 52 (181)
||||||||+|+|.+..... ..+..|++.....+.... .+.+|||||-.
T Consensus 129 ~nvGKSsliN~l~~~~~~~-~~~~~g~T~~~~~~~~~~---~~~l~DtpG~~ 176 (282)
T 1puj_A 129 PNVGKSTLINRLAKKNIAK-TGDRPGITTSQQWVKVGK---ELELLDTPGIL 176 (282)
T ss_dssp TTSSHHHHHHHHHTSCCC-------------CCEEETT---TEEEEECCCCC
T ss_pred CCCchHHHHHHHhcCceee-cCCCCCeeeeeEEEEeCC---CEEEEECcCcC
Confidence 7999999999999876432 223344443333333332 46799999964
No 227
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.06 E-value=1.8e-06 Score=66.10 Aligned_cols=90 Identities=14% Similarity=0.090 Sum_probs=52.0
Q ss_pred EEEEEEeCCChhhhhc-----cc-hhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccc
Q 030225 41 IKFDIWDTAGQERYHS-----LA-PMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRK 114 (181)
Q Consensus 41 ~~~~i~D~~G~~~~~~-----~~-~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~ 114 (181)
+.+.|+||+|...... +. -.....+|.+++|+|++...... .....+... -.+..+|+||.|....
T Consensus 183 ~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~---~~a~~f~~~---~~i~gVIlTKlD~~~~-- 254 (443)
T 3dm5_A 183 VDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAY---NQALAFKEA---TPIGSIIVTKLDGSAK-- 254 (443)
T ss_dssp CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHH---HHHHHHHHS---CTTEEEEEECCSSCSS--
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHH---HHHHHHHhh---CCCeEEEEECCCCccc--
Confidence 5788999999432111 10 01123579999999988643322 222333322 2356788999997431
Q ss_pred CCHHHHHHHHHHcCCeEEEEecCCCCCH
Q 030225 115 VKNEEGELYAQENGLSFLETSAKSAHNV 142 (181)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 142 (181)
.-.+.......++|+.+++. |+++
T Consensus 255 --gG~~ls~~~~~g~PI~fig~--Ge~v 278 (443)
T 3dm5_A 255 --GGGALSAVAATGAPIKFIGT--GEKI 278 (443)
T ss_dssp --HHHHHHHHHTTCCCEEEEEC--SSST
T ss_pred --ccHHHHHHHHHCCCEEEEEc--CCCh
Confidence 12334455567888887775 5543
No 228
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=97.94 E-value=4.5e-06 Score=63.98 Aligned_cols=84 Identities=17% Similarity=0.070 Sum_probs=47.2
Q ss_pred EEEEEEEeCCChhhhhc-cc---h--hhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhCCCCc-e-EEEEEeCCCCcc
Q 030225 40 TIKFDIWDTAGQERYHS-LA---P--MYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNL-I-MFLVANKVDLEE 111 (181)
Q Consensus 40 ~~~~~i~D~~G~~~~~~-~~---~--~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-p-~ivi~nK~D~~~ 111 (181)
.+.+.|+||||...... +. . ..+..+|.+++|+|+..... .......+. ... | ..+|+||.|...
T Consensus 180 ~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~~----~~~~~i~gvVlnK~D~~~ 252 (432)
T 2v3c_C 180 KADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGIQAKAFK----EAVGEIGSIIVTKLDGSA 252 (432)
T ss_dssp SCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHHHHHHHH----TTSCSCEEEEEECSSSCS
T ss_pred CCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHHHHHHHh----hcccCCeEEEEeCCCCcc
Confidence 35678999999643211 10 1 11236899999999875432 122222221 233 4 888899999742
Q ss_pred cccCCHHHHHHHHHHcCCeEEEE
Q 030225 112 KRKVKNEEGELYAQENGLSFLET 134 (181)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~ 134 (181)
. ...........+.++.++
T Consensus 253 ~----~g~~l~~~~~~~~pi~~i 271 (432)
T 2v3c_C 253 K----GGGALSAVAETKAPIKFI 271 (432)
T ss_dssp T----THHHHHHHHHSSCCEEEE
T ss_pred c----hHHHHHHHHHHCCCEEEe
Confidence 1 122334556667776555
No 229
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.82 E-value=1.1e-05 Score=61.69 Aligned_cols=91 Identities=13% Similarity=0.073 Sum_probs=53.4
Q ss_pred EEEEEEEeCCChhh--hh----ccchh--hccCCcEEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcc
Q 030225 40 TIKFDIWDTAGQER--YH----SLAPM--YYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEE 111 (181)
Q Consensus 40 ~~~~~i~D~~G~~~--~~----~~~~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~ 111 (181)
.+.+.|+||||... .. ..... .....+.+++|+|+....... .....+... -.+..+|+||.|...
T Consensus 179 ~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~---~~a~~f~~~---~~~~gVIlTKlD~~a 252 (433)
T 3kl4_A 179 KMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAY---DLASRFHQA---SPIGSVIITKMDGTA 252 (433)
T ss_dssp TCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGH---HHHHHHHHH---CSSEEEEEECGGGCS
T ss_pred CCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHH---HHHHHHhcc---cCCcEEEEecccccc
Confidence 35678999999533 11 01111 112468999999998643322 222333322 235788999999642
Q ss_pred cccCCHHHHHHHHHHcCCeEEEEecCCCCCH
Q 030225 112 KRKVKNEEGELYAQENGLSFLETSAKSAHNV 142 (181)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 142 (181)
..-.+.......+.|+.+++. |+++
T Consensus 253 ----~~G~als~~~~~g~Pi~fig~--Ge~v 277 (433)
T 3kl4_A 253 ----KGGGALSAVVATGATIKFIGT--GEKI 277 (433)
T ss_dssp ----CHHHHHHHHHHHTCEEEEEEC--CSSS
T ss_pred ----cchHHHHHHHHHCCCEEEEEC--CCCh
Confidence 223344555667899888875 6554
No 230
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.69 E-value=6.5e-05 Score=54.78 Aligned_cols=92 Identities=15% Similarity=0.133 Sum_probs=54.8
Q ss_pred EEEEEEEeCCChhh--hhc-cch-----hhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhCCCCce-EEEEEeCCCCc
Q 030225 40 TIKFDIWDTAGQER--YHS-LAP-----MYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLI-MFLVANKVDLE 110 (181)
Q Consensus 40 ~~~~~i~D~~G~~~--~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivi~nK~D~~ 110 (181)
.+.+.++||||... ... +.. .....+|.+++|+|+.... ........+.. ..| ..+|.||.|..
T Consensus 180 ~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~---~~~~~~~~~~~----~~~i~gvVlnk~D~~ 252 (297)
T 1j8m_F 180 KMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQ---KAYDLASKFNQ----ASKIGTIIITKMDGT 252 (297)
T ss_dssp TCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGG---GHHHHHHHHHH----TCTTEEEEEECGGGC
T ss_pred CCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchH---HHHHHHHHHHh----hCCCCEEEEeCCCCC
Confidence 35688999999765 211 111 1234689999999987432 12222222322 234 77889999963
Q ss_pred ccccCCHHHHHHHHHHcCCeEEEEecCCCCCHHH
Q 030225 111 EKRKVKNEEGELYAQENGLSFLETSAKSAHNVNE 144 (181)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 144 (181)
. ............+.|+.+++ .|+++++
T Consensus 253 ~----~~g~~~~~~~~~~~pi~~i~--~Ge~v~d 280 (297)
T 1j8m_F 253 A----KGGGALSAVAATGATIKFIG--TGEKIDE 280 (297)
T ss_dssp T----THHHHHHHHHTTTCCEEEEE--CSSSTTC
T ss_pred c----chHHHHHHHHHHCcCEEEEe--CCCChhh
Confidence 2 12334556667788988776 5666644
No 231
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=97.63 E-value=3.4e-05 Score=61.22 Aligned_cols=52 Identities=17% Similarity=0.017 Sum_probs=29.8
Q ss_pred CCCchhHHHHHHhhCCCCCccccce-eeeEEEEEE--EE-CCeEEEEEEEeCCChh
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTI-GAAFFTQVL--SL-NEVTIKFDIWDTAGQE 52 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~-~~~~~~~~~--~~-~~~~~~~~i~D~~G~~ 52 (181)
||||||||+|+|.+.........++ +.+...+.+ .. ......+.++||||-.
T Consensus 47 pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~ 102 (592)
T 1f5n_A 47 YRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLG 102 (592)
T ss_dssp TTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBC
T ss_pred CCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcC
Confidence 7999999999999876321121111 222222222 11 1223467899999964
No 232
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=97.45 E-value=5.8e-06 Score=64.13 Aligned_cols=91 Identities=14% Similarity=0.093 Sum_probs=50.9
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCChhh--hhccc--------hhhccCCcEEEE
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER--YHSLA--------PMYYRGAAAAVV 70 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--~~~~~--------~~~~~~~d~~i~ 70 (181)
|||||||+.++|...-... ..++.+...........+......+||..|... ....+ ..++....+.++
T Consensus 48 pGsGKSTia~~La~~l~~~-~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~~~l~~~~G~~v 126 (469)
T 1bif_A 48 PARGKTYISKKLTRYLNFI-GVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRKFLSEEGGHVA 126 (469)
T ss_dssp TTSSHHHHHHHHHHHHHHT-TCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHHHHHTTCCSEE
T ss_pred CCCCHHHHHHHHHHHHhcc-CCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCEE
Confidence 7999999999987543211 112222110000000111112345899999732 22222 456666788899
Q ss_pred EEECCChhHHHHHHHHHHHHHHh
Q 030225 71 VYDITSMDSFERAKKWVQELQRQ 93 (181)
Q Consensus 71 v~d~~~~~s~~~~~~~~~~~~~~ 93 (181)
|+|.++. .......|+..+...
T Consensus 127 V~D~tn~-~~~~R~~~~~~~~~~ 148 (469)
T 1bif_A 127 VFDATNT-TRERRAMIFNFGEQN 148 (469)
T ss_dssp EEESCCC-SHHHHHHHHHHHHHH
T ss_pred EEeCCCC-CHHHHHHHHHHHHhc
Confidence 9999986 455566676666554
No 233
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.31 E-value=0.00039 Score=55.62 Aligned_cols=66 Identities=20% Similarity=0.235 Sum_probs=34.7
Q ss_pred EEEEEeCCChh-------------hhhccchhhccCCc-EEEEEEECCChhHH-HHHHHHHHHHHHhCCCCceEEEEEeC
Q 030225 42 KFDIWDTAGQE-------------RYHSLAPMYYRGAA-AAVVVYDITSMDSF-ERAKKWVQELQRQGNPNLIMFLVANK 106 (181)
Q Consensus 42 ~~~i~D~~G~~-------------~~~~~~~~~~~~~d-~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~p~ivi~nK 106 (181)
.+.+.|.||-. ....+...++.+.. +++++.+ .+.+.. .....+...+ ...+.+.++|+||
T Consensus 148 ~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt-~~~d~a~~~~l~la~~v---~~~g~rtI~VlTK 223 (608)
T 3szr_A 148 DLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVP-SNVDIATTEALSMAQEV---DPEGDRTIGILTK 223 (608)
T ss_dssp CEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEE-SSSCTTTCHHHHHHHHH---CSSCCSEEEEEEC
T ss_pred ceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEe-ccchhccHHHHHHHHHH---hhcCCceEEEecc
Confidence 47899999621 22234445555544 4444444 332211 1122332333 3356789999999
Q ss_pred CCCcc
Q 030225 107 VDLEE 111 (181)
Q Consensus 107 ~D~~~ 111 (181)
.|+.+
T Consensus 224 ~Dlv~ 228 (608)
T 3szr_A 224 PDLVD 228 (608)
T ss_dssp GGGSS
T ss_pred hhhcC
Confidence 99753
No 234
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.05 E-value=0.00068 Score=50.09 Aligned_cols=91 Identities=11% Similarity=0.057 Sum_probs=51.4
Q ss_pred EEEEEeCCChhhhhccc-hh-----hccCCcEEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccC
Q 030225 42 KFDIWDTAGQERYHSLA-PM-----YYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKV 115 (181)
Q Consensus 42 ~~~i~D~~G~~~~~~~~-~~-----~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~ 115 (181)
.+.++|++|........ .. ..-..|-.+++.|+.... ++...+..+.... ....+++||.|...
T Consensus 213 d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~---~~~~~~~~~~~~~---~it~iilTKlD~~a---- 282 (328)
T 3e70_C 213 DVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN---AIVEQARQFNEAV---KIDGIILTKLDADA---- 282 (328)
T ss_dssp SEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHHHHHHHHHHS---CCCEEEEECGGGCS----
T ss_pred hhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH---HHHHHHHHHHHhc---CCCEEEEeCcCCcc----
Confidence 45679999863222110 00 112368889999976542 2333333443321 24577789998522
Q ss_pred CHHHHHHHHHHcCCeEEEEecCCCCCHHH
Q 030225 116 KNEEGELYAQENGLSFLETSAKSAHNVNE 144 (181)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 144 (181)
..-.........+.|+.+++ +|+++++
T Consensus 283 ~~G~~l~~~~~~~~pi~~i~--~Ge~v~d 309 (328)
T 3e70_C 283 RGGAALSISYVIDAPILFVG--VGQGYDD 309 (328)
T ss_dssp CCHHHHHHHHHHTCCEEEEE--CSSSTTC
T ss_pred chhHHHHHHHHHCCCEEEEe--CCCCccc
Confidence 12234556677789988887 6666543
No 235
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=96.77 E-value=0.001 Score=51.09 Aligned_cols=15 Identities=20% Similarity=0.217 Sum_probs=13.3
Q ss_pred CCCchhHHHHHHhhC
Q 030225 1 MGTGKTSLVLRFVKG 15 (181)
Q Consensus 1 ~~~GKttLl~~l~~~ 15 (181)
+++|||||||.|++.
T Consensus 76 ~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 76 FRKGKSFLMDFMLRY 90 (447)
T ss_dssp TTSSHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHhhh
Confidence 689999999999863
No 236
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=96.40 E-value=0.005 Score=41.81 Aligned_cols=85 Identities=9% Similarity=0.013 Sum_probs=55.3
Q ss_pred EEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhC--CCCceEEEEEeCCCCcccccCCHH
Q 030225 41 IKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQG--NPNLIMFLVANKVDLEEKRKVKNE 118 (181)
Q Consensus 41 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ivi~nK~D~~~~~~~~~~ 118 (181)
+.+.++|+|+.. .......+..+|.++++...+.. + ..+...++.+.... .++.++.+|.|+.|.... ...
T Consensus 76 yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~~---~~~ 148 (206)
T 4dzz_A 76 YDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPL-D-FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMAT---MLN 148 (206)
T ss_dssp SSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTT-T-HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTEE---EEH
T ss_pred CCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHH-H-HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCch---HHH
Confidence 568899999865 22334566679999999987644 4 66666666665543 245677899999985322 223
Q ss_pred HHHHHHHHcCCeEE
Q 030225 119 EGELYAQENGLSFL 132 (181)
Q Consensus 119 ~~~~~~~~~~~~~~ 132 (181)
+..++.++++.+++
T Consensus 149 ~~~~~l~~~~~~vl 162 (206)
T 4dzz_A 149 VLKESIKDTGVKAF 162 (206)
T ss_dssp HHHHHHHHHTCCBC
T ss_pred HHHHHHHHcCCcee
Confidence 44555555665544
No 237
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.97 E-value=0.043 Score=42.08 Aligned_cols=84 Identities=14% Similarity=0.052 Sum_probs=45.2
Q ss_pred EEEEEEEeCCChhhhhc-cch-----hhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhCCCCce-EEEEEeCCCCccc
Q 030225 40 TIKFDIWDTAGQERYHS-LAP-----MYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLI-MFLVANKVDLEEK 112 (181)
Q Consensus 40 ~~~~~i~D~~G~~~~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivi~nK~D~~~~ 112 (181)
.+.+.|+||||...... +.. ..+..++.+++|+|+...... ......+... .+ .-+|+||.|....
T Consensus 183 ~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~---~~~~~~f~~~----l~i~gvVlnK~D~~~~ 255 (433)
T 2xxa_A 183 FYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDA---ANTAKAFNEA----LPLTGVVLTKVDGDAR 255 (433)
T ss_dssp TCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTH---HHHHHHHHHH----SCCCCEEEECTTSSSC
T ss_pred CCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHH---HHHHHHHhcc----CCCeEEEEecCCCCcc
Confidence 35688999999643211 111 123468899999998754322 2222222221 23 3468899997421
Q ss_pred ccCCHHHHHHHHHHcCCeEEEE
Q 030225 113 RKVKNEEGELYAQENGLSFLET 134 (181)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~ 134 (181)
. ..+.......+.|+.++
T Consensus 256 ~----g~~l~i~~~~~~Pi~~i 273 (433)
T 2xxa_A 256 G----GAALSIRHITGKPIKFL 273 (433)
T ss_dssp C----THHHHHHHHHCCCEEEE
T ss_pred H----HHHHHHHHHHCCCeEEE
Confidence 1 12334455556664433
No 238
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=95.80 E-value=0.0021 Score=47.04 Aligned_cols=16 Identities=31% Similarity=0.374 Sum_probs=12.9
Q ss_pred CCCchhHHHHHHhhCC
Q 030225 1 MGTGKTSLVLRFVKGQ 16 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~ 16 (181)
||||||||+|.|.+..
T Consensus 182 sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 182 SGVGKSSLLNAISPEL 197 (307)
T ss_dssp HHHHHHHHHHHHCC--
T ss_pred CCCCHHHHHHHhcccc
Confidence 5899999999998643
No 239
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=95.69 E-value=0.015 Score=42.36 Aligned_cols=13 Identities=38% Similarity=0.716 Sum_probs=12.4
Q ss_pred CCCchhHHHHHHh
Q 030225 1 MGTGKTSLVLRFV 13 (181)
Q Consensus 1 ~~~GKttLl~~l~ 13 (181)
||||||||+|.|.
T Consensus 174 sG~GKSTLln~l~ 186 (302)
T 2yv5_A 174 SGVGKSSILSRLT 186 (302)
T ss_dssp TTSSHHHHHHHHH
T ss_pred CCCCHHHHHHHHH
Confidence 6999999999998
No 240
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=95.65 E-value=0.058 Score=36.88 Aligned_cols=85 Identities=14% Similarity=0.103 Sum_probs=55.8
Q ss_pred EEEEEEeCCCh-hhhhccchhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHH
Q 030225 41 IKFDIWDTAGQ-ERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEE 119 (181)
Q Consensus 41 ~~~~i~D~~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~ 119 (181)
+.+.++|+|+. ... .....+..+|.+|++...+ ..+...+...++.+.... +.++.++.|+.|.... ....+
T Consensus 68 yD~viiD~p~~~~~~--~~~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~~--~~~~~vv~N~~~~~~~--~~~~~ 140 (209)
T 3cwq_A 68 YQNIVIDTQARPEDE--DLEALADGCDLLVIPSTPD-ALALDALMLTIETLQKLG--NNRFRILLTIIPPYPS--KDGDE 140 (209)
T ss_dssp CSEEEEEEECCCSSS--HHHHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHHTC--SSSEEEEECSBCCTTS--CHHHH
T ss_pred CCEEEEeCCCCcCcH--HHHHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHhcc--CCCEEEEEEecCCccc--hHHHH
Confidence 56889999986 322 2345677899999998864 566777777777776632 4568889999985320 11344
Q ss_pred HHHHHHHcCCeEE
Q 030225 120 GELYAQENGLSFL 132 (181)
Q Consensus 120 ~~~~~~~~~~~~~ 132 (181)
..+.+++.+.+++
T Consensus 141 ~~~~l~~~g~~v~ 153 (209)
T 3cwq_A 141 ARQLLTTAGLPLF 153 (209)
T ss_dssp HHHHHHHTTCCBC
T ss_pred HHHHHHHcCCchh
Confidence 4555555665544
No 241
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=95.60 E-value=0.11 Score=36.09 Aligned_cols=91 Identities=12% Similarity=0.133 Sum_probs=60.7
Q ss_pred EEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHH
Q 030225 40 TIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEE 119 (181)
Q Consensus 40 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~ 119 (181)
.+.+.|+|+|+... ......+..+|.++++... +..+...+...++.+.....+...+.+|.|+.+... ....
T Consensus 118 ~yD~viiD~p~~~~--~~~~~~l~~ad~viiv~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~~--~~~~-- 190 (245)
T 3ea0_A 118 FYDYIIVDFGASID--HVGVWVLEHLDELCIVTTP-SLQSLRRAGQLLKLCKEFEKPISRIEIILNRADTNS--RITS-- 190 (245)
T ss_dssp HCSEEEEEEESSCC--TTHHHHGGGCSEEEEEECS-SHHHHHHHHHHHHHHHTCSSCCSCEEEEEESTTSCT--TSCH--
T ss_pred hCCEEEEeCCCCCc--hHHHHHHHHCCEEEEEecC-cHHHHHHHHHHHHHHHHhCCCccceEEEEecCCCCC--CCCH--
Confidence 35688999987542 2345567789999999886 467778888888887665434556888899998533 2222
Q ss_pred HHHHHHHcCCeEEEEecCC
Q 030225 120 GELYAQENGLSFLETSAKS 138 (181)
Q Consensus 120 ~~~~~~~~~~~~~~~Sa~~ 138 (181)
..+.+..+.+++..-..+
T Consensus 191 -~~~~~~~~~~v~~~ip~~ 208 (245)
T 3ea0_A 191 -DEIEKVIGRPISKRIPQD 208 (245)
T ss_dssp -HHHHHHHTSCEEEEECCC
T ss_pred -HHHHHHhCCCeEEECCCC
Confidence 233444677776553333
No 242
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.52 E-value=0.0053 Score=41.14 Aligned_cols=16 Identities=44% Similarity=0.605 Sum_probs=13.6
Q ss_pred CCCchhHHHHHHhhCC
Q 030225 1 MGTGKTSLVLRFVKGQ 16 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~ 16 (181)
+|||||||++.+.+.-
T Consensus 9 nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 9 PGVGKTTLVKKIVERL 24 (178)
T ss_dssp TTSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHh
Confidence 6999999999988643
No 243
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.51 E-value=0.0053 Score=41.05 Aligned_cols=15 Identities=13% Similarity=0.361 Sum_probs=13.3
Q ss_pred CCCchhHHHHHHhhC
Q 030225 1 MGTGKTSLVLRFVKG 15 (181)
Q Consensus 1 ~~~GKttLl~~l~~~ 15 (181)
||||||||++.|.+.
T Consensus 14 sGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 14 HGVGRRHIKNTLITK 28 (180)
T ss_dssp TTSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHhh
Confidence 699999999999863
No 244
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.36 E-value=0.0012 Score=44.75 Aligned_cols=15 Identities=33% Similarity=0.618 Sum_probs=13.3
Q ss_pred CCCchhHHHHHHhhC
Q 030225 1 MGTGKTSLVLRFVKG 15 (181)
Q Consensus 1 ~~~GKttLl~~l~~~ 15 (181)
||||||||+++|+..
T Consensus 10 SG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 10 SGTGKSTLLKKLFAE 24 (186)
T ss_dssp TTSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHh
Confidence 699999999999854
No 245
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.29 E-value=0.007 Score=40.61 Aligned_cols=15 Identities=20% Similarity=0.368 Sum_probs=13.5
Q ss_pred CCCchhHHHHHHhhC
Q 030225 1 MGTGKTSLVLRFVKG 15 (181)
Q Consensus 1 ~~~GKttLl~~l~~~ 15 (181)
||||||||++.|.+.
T Consensus 18 ~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 18 PGSGKSTIAEALANL 32 (191)
T ss_dssp TTSCHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHhc
Confidence 799999999999875
No 246
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.09 E-value=0.0086 Score=40.73 Aligned_cols=14 Identities=29% Similarity=0.681 Sum_probs=12.8
Q ss_pred CCCchhHHHHHHhh
Q 030225 1 MGTGKTSLVLRFVK 14 (181)
Q Consensus 1 ~~~GKttLl~~l~~ 14 (181)
+|||||||++.|.+
T Consensus 13 sGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 13 SGAGKSTLLKKLFQ 26 (198)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHh
Confidence 69999999999976
No 247
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.06 E-value=0.0088 Score=40.56 Aligned_cols=15 Identities=60% Similarity=0.756 Sum_probs=13.4
Q ss_pred CCCchhHHHHHHhhC
Q 030225 1 MGTGKTSLVLRFVKG 15 (181)
Q Consensus 1 ~~~GKttLl~~l~~~ 15 (181)
+|||||||++.|.+.
T Consensus 16 ~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 16 SGAGKTSLVRALVKA 30 (205)
T ss_dssp TTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHhh
Confidence 699999999999864
No 248
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.06 E-value=0.0089 Score=40.13 Aligned_cols=15 Identities=33% Similarity=0.618 Sum_probs=13.2
Q ss_pred CCCchhHHHHHHhhC
Q 030225 1 MGTGKTSLVLRFVKG 15 (181)
Q Consensus 1 ~~~GKttLl~~l~~~ 15 (181)
+|||||||++.|.+.
T Consensus 10 sGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 10 SGTGKSTLLKKLFAE 24 (186)
T ss_dssp SSSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHhh
Confidence 699999999999864
No 249
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.02 E-value=0.0088 Score=40.93 Aligned_cols=15 Identities=27% Similarity=0.441 Sum_probs=12.9
Q ss_pred CCCchhHHHHHHhhC
Q 030225 1 MGTGKTSLVLRFVKG 15 (181)
Q Consensus 1 ~~~GKttLl~~l~~~ 15 (181)
+|||||||++.|.+.
T Consensus 31 sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 31 PGSGKSTLSNPLAAA 45 (208)
T ss_dssp TTSCTHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 699999999988753
No 250
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.99 E-value=0.0095 Score=40.73 Aligned_cols=16 Identities=19% Similarity=0.231 Sum_probs=13.7
Q ss_pred CCCchhHHHHHHhhCC
Q 030225 1 MGTGKTSLVLRFVKGQ 16 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~ 16 (181)
+|||||||++.+.+..
T Consensus 29 nGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 29 SAVGKSTVVRCLRERI 44 (207)
T ss_dssp TTSSHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHhhC
Confidence 6999999999998643
No 251
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.98 E-value=0.0098 Score=39.70 Aligned_cols=15 Identities=40% Similarity=0.731 Sum_probs=13.3
Q ss_pred CCCchhHHHHHHhhC
Q 030225 1 MGTGKTSLVLRFVKG 15 (181)
Q Consensus 1 ~~~GKttLl~~l~~~ 15 (181)
+|||||||+++|...
T Consensus 15 sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 15 SGTGKTTLLKKLIPA 29 (174)
T ss_dssp TTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHh
Confidence 699999999999864
No 252
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=94.90 E-value=0.0081 Score=39.81 Aligned_cols=13 Identities=23% Similarity=0.570 Sum_probs=11.3
Q ss_pred CCCchhHHHHHHh
Q 030225 1 MGTGKTSLVLRFV 13 (181)
Q Consensus 1 ~~~GKttLl~~l~ 13 (181)
||||||||++.+.
T Consensus 18 nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 18 SGSGKSTFAKKHF 30 (171)
T ss_dssp TTSCHHHHHHHHS
T ss_pred CCCCHHHHHHHHc
Confidence 6999999999755
No 253
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.89 E-value=0.01 Score=41.10 Aligned_cols=16 Identities=44% Similarity=0.684 Sum_probs=13.8
Q ss_pred CCCchhHHHHHHhhCC
Q 030225 1 MGTGKTSLVLRFVKGQ 16 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~ 16 (181)
+|||||||++.|.+..
T Consensus 25 sGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 25 SGAGKSSLIQALLKTQ 40 (219)
T ss_dssp TTSCHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHhccC
Confidence 6999999999998743
No 254
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=94.84 E-value=0.53 Score=33.97 Aligned_cols=85 Identities=21% Similarity=0.210 Sum_probs=55.1
Q ss_pred EEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhC-CCCceEE-EEEeCCCCcccccCCH
Q 030225 40 TIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQG-NPNLIMF-LVANKVDLEEKRKVKN 117 (181)
Q Consensus 40 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~i-vi~nK~D~~~~~~~~~ 117 (181)
.+.+.|+|+|+..... .....+..+|.+|+|... +..++..+...++.+.... ..+.+++ +|.|+.+..
T Consensus 156 ~yD~ViiD~p~~~~~~-~~~~~l~~aD~viiv~~~-~~~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~~------- 226 (307)
T 3end_A 156 DTDVVIFDVLGDVVCG-GFAAPLQHADQAVVVTAN-DFDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRAT------- 226 (307)
T ss_dssp SCSEEEEEECCSSCCG-GGGGGGGTCSEEEEEECS-SHHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSCC-------
T ss_pred cCCEEEEeCCCccchH-HHHHHHHHCCEEEEEecC-cHHHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCcH-------
Confidence 3678899998754322 123456789999999885 5667777777777776532 2455544 889999842
Q ss_pred HHHHHHHHHcCCeEEE
Q 030225 118 EEGELYAQENGLSFLE 133 (181)
Q Consensus 118 ~~~~~~~~~~~~~~~~ 133 (181)
.....+.+..+.+++.
T Consensus 227 ~~~~~~~~~~g~~v~~ 242 (307)
T 3end_A 227 DEVDRFCKETNFRRLA 242 (307)
T ss_dssp HHHHHHHHHHTCCEEE
T ss_pred HHHHHHHHHcCCCcee
Confidence 3345556666766543
No 255
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=94.73 E-value=0.011 Score=44.08 Aligned_cols=17 Identities=35% Similarity=0.370 Sum_probs=14.7
Q ss_pred CCCchhHHHHHHhhCCC
Q 030225 1 MGTGKTSLVLRFVKGQF 17 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~ 17 (181)
||||||||+|.|.+...
T Consensus 224 sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 224 SGVGKSSLLNALLGLQN 240 (358)
T ss_dssp TTSSHHHHHHHHHCCSS
T ss_pred CCccHHHHHHHHhcccc
Confidence 79999999999997543
No 256
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.73 E-value=0.012 Score=40.64 Aligned_cols=28 Identities=4% Similarity=0.081 Sum_probs=19.1
Q ss_pred CCeEEEEecCCCCCHHHHHHHHHHHHHhhCCC
Q 030225 128 GLSFLETSAKSAHNVNELFYEIAKRLAEVNPS 159 (181)
Q Consensus 128 ~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~~~ 159 (181)
.+.++.+. .++++.+..+.+.+....+.
T Consensus 184 ~~d~iiv~----~~~~ea~~~~~~ii~~~~~~ 211 (218)
T 1z6g_A 184 NFNLSIIN----DDLTLTYQQLKNYLLNSYIH 211 (218)
T ss_dssp CCSEEEEC----SSHHHHHHHHHHHHHHHTTC
T ss_pred CCCEEEEC----CCHHHHHHHHHHHHHHHHHh
Confidence 45555443 46889999888888776544
No 257
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.62 E-value=0.014 Score=38.46 Aligned_cols=15 Identities=27% Similarity=0.572 Sum_probs=13.0
Q ss_pred CCCchhHHHHHHhhC
Q 030225 1 MGTGKTSLVLRFVKG 15 (181)
Q Consensus 1 ~~~GKttLl~~l~~~ 15 (181)
||||||||++.|.+.
T Consensus 13 ~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 13 MGAGKSTIGRQLAQQ 27 (173)
T ss_dssp TTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 799999999988763
No 258
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.52 E-value=0.015 Score=38.14 Aligned_cols=30 Identities=10% Similarity=0.006 Sum_probs=20.2
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHHHHhhCCC
Q 030225 129 LSFLETSAKSAHNVNELFYEIAKRLAEVNPS 159 (181)
Q Consensus 129 ~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~~~ 159 (181)
...+.+.+ ++..++++.+.|...+....++
T Consensus 141 ~~~~~id~-~~~~~~ev~~~I~~~~~~~~~~ 170 (173)
T 3kb2_A 141 LHTYSWDT-GQWSSDEIAKDIIFLVELEHHH 170 (173)
T ss_dssp SCEEEEET-TTSCHHHHHHHHHHHHHHGGGC
T ss_pred CCEEEEEC-CCCCHHHHHHHHHHHHhCCCcc
Confidence 34555553 2347999999999888775543
No 259
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.48 E-value=0.015 Score=39.59 Aligned_cols=26 Identities=8% Similarity=0.197 Sum_probs=18.4
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHHHHhhCC
Q 030225 129 LSFLETSAKSAHNVNELFYEIAKRLAEVNP 158 (181)
Q Consensus 129 ~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~~ 158 (181)
+.++-+ ++++++.++.|...+.+.+.
T Consensus 167 fd~viv----Nd~l~~a~~~l~~ii~~~~~ 192 (197)
T 3ney_A 167 FDLSLV----NNGVDETLKKLQEAFDQACS 192 (197)
T ss_dssp CSEEEE----ESCHHHHHHHHHHHHHHCCC
T ss_pred CCEEEE----CCCHHHHHHHHHHHHHHccC
Confidence 455555 34699999999988866543
No 260
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.48 E-value=0.015 Score=38.38 Aligned_cols=14 Identities=29% Similarity=0.615 Sum_probs=13.0
Q ss_pred CCCchhHHHHHHhh
Q 030225 1 MGTGKTSLVLRFVK 14 (181)
Q Consensus 1 ~~~GKttLl~~l~~ 14 (181)
|||||||+.++|..
T Consensus 11 ~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 11 PGSGKSTWAREFIA 24 (181)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHh
Confidence 79999999999986
No 261
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=94.45 E-value=0.014 Score=40.50 Aligned_cols=16 Identities=25% Similarity=0.335 Sum_probs=13.4
Q ss_pred CCCchhHHHHHHhhCC
Q 030225 1 MGTGKTSLVLRFVKGQ 16 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~ 16 (181)
+|||||||++.+.+-.
T Consensus 39 nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 39 SGSGKSTLLYILGLLD 54 (224)
T ss_dssp TTSCHHHHHHHHTTSS
T ss_pred CCCCHHHHHHHHhcCC
Confidence 6999999999887643
No 262
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.44 E-value=0.014 Score=40.81 Aligned_cols=16 Identities=19% Similarity=0.212 Sum_probs=13.4
Q ss_pred CCCchhHHHHHHhhCC
Q 030225 1 MGTGKTSLVLRFVKGQ 16 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~ 16 (181)
+|||||||++.+.+-.
T Consensus 40 nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 40 SGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TTSSHHHHHHHHTTSS
T ss_pred CCCcHHHHHHHHhcCC
Confidence 6999999999887643
No 263
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.43 E-value=0.016 Score=38.84 Aligned_cols=14 Identities=29% Similarity=0.517 Sum_probs=12.7
Q ss_pred CCCchhHHHHHHhh
Q 030225 1 MGTGKTSLVLRFVK 14 (181)
Q Consensus 1 ~~~GKttLl~~l~~ 14 (181)
||||||||++.|.+
T Consensus 11 ~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 11 AGVGKSTTCKRLAA 24 (189)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCcHHHHHHHHhc
Confidence 69999999999975
No 264
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=94.40 E-value=0.014 Score=42.51 Aligned_cols=16 Identities=38% Similarity=0.503 Sum_probs=14.0
Q ss_pred CCCchhHHHHHHhhCC
Q 030225 1 MGTGKTSLVLRFVKGQ 16 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~ 16 (181)
||||||||+|.|.+..
T Consensus 178 sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 178 SGVGKSSLLNAINPGL 193 (301)
T ss_dssp TTSSHHHHHHHHSTTC
T ss_pred CCCcHHHHHHHhcccc
Confidence 7999999999998754
No 265
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.36 E-value=0.017 Score=38.32 Aligned_cols=14 Identities=36% Similarity=0.586 Sum_probs=12.6
Q ss_pred CCCchhHHHHHHhh
Q 030225 1 MGTGKTSLVLRFVK 14 (181)
Q Consensus 1 ~~~GKttLl~~l~~ 14 (181)
+|||||||+.+|..
T Consensus 13 sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 13 KHSGKTTLMEKWVA 26 (169)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 69999999999885
No 266
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.33 E-value=0.018 Score=37.78 Aligned_cols=16 Identities=38% Similarity=0.713 Sum_probs=13.6
Q ss_pred CCCchhHHHHHHhhCC
Q 030225 1 MGTGKTSLVLRFVKGQ 16 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~ 16 (181)
.|+|||||++.+.+.-
T Consensus 42 nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 42 LGAGKTTLTRGMLQGI 57 (158)
T ss_dssp TTSSHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhC
Confidence 5899999999998754
No 267
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.32 E-value=0.017 Score=39.14 Aligned_cols=14 Identities=29% Similarity=0.506 Sum_probs=12.5
Q ss_pred CCCchhHHHHHHhh
Q 030225 1 MGTGKTSLVLRFVK 14 (181)
Q Consensus 1 ~~~GKttLl~~l~~ 14 (181)
||||||||++.|.+
T Consensus 38 ~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 38 SGSGKTTIAHGVAD 51 (200)
T ss_dssp TTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 79999999998865
No 268
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.32 E-value=0.017 Score=39.10 Aligned_cols=16 Identities=25% Similarity=0.418 Sum_probs=13.8
Q ss_pred CCCchhHHHHHHhhCC
Q 030225 1 MGTGKTSLVLRFVKGQ 16 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~ 16 (181)
||||||||++.|.+.-
T Consensus 15 ~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 15 SGVGKGTVRKRIFEDP 30 (207)
T ss_dssp TTSCHHHHHHHHHHCT
T ss_pred CCCCHHHHHHHHHHhh
Confidence 7999999999988654
No 269
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.31 E-value=0.016 Score=37.91 Aligned_cols=12 Identities=25% Similarity=0.473 Sum_probs=11.4
Q ss_pred CCCchhHHHHHH
Q 030225 1 MGTGKTSLVLRF 12 (181)
Q Consensus 1 ~~~GKttLl~~l 12 (181)
|||||||+.+.|
T Consensus 10 ~GsGKsT~a~~L 21 (179)
T 3lw7_A 10 PGSGKSEFAKLL 21 (179)
T ss_dssp TTSCHHHHHHHH
T ss_pred CCCCHHHHHHHH
Confidence 799999999999
No 270
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=94.30 E-value=0.017 Score=39.25 Aligned_cols=18 Identities=17% Similarity=0.337 Sum_probs=14.5
Q ss_pred CHHHHHHHHHHHHHhhCC
Q 030225 141 NVNELFYEIAKRLAEVNP 158 (181)
Q Consensus 141 gi~~~~~~l~~~~~~~~~ 158 (181)
.++++.+.|.+.+....+
T Consensus 182 ~~e~~~~~i~~~i~~~~~ 199 (204)
T 2qor_A 182 DLARTYAELREYLLGSYP 199 (204)
T ss_dssp SHHHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHHHHhh
Confidence 799999999988876544
No 271
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=94.29 E-value=0.018 Score=40.55 Aligned_cols=16 Identities=19% Similarity=0.204 Sum_probs=13.6
Q ss_pred CCCchhHHHHHHhhCC
Q 030225 1 MGTGKTSLVLRFVKGQ 16 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~ 16 (181)
+|||||||++.+.+-.
T Consensus 33 nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 33 TGAGKSVFLELIAGIV 48 (240)
T ss_dssp TTSSHHHHHHHHHTSS
T ss_pred CCCCHHHHHHHHhCCC
Confidence 5999999999988653
No 272
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.28 E-value=0.017 Score=38.23 Aligned_cols=14 Identities=21% Similarity=0.328 Sum_probs=12.8
Q ss_pred CCCchhHHHHHHhh
Q 030225 1 MGTGKTSLVLRFVK 14 (181)
Q Consensus 1 ~~~GKttLl~~l~~ 14 (181)
|||||||+.+.|..
T Consensus 12 ~GsGKST~a~~La~ 25 (178)
T 1qhx_A 12 SSAGKSGIVRCLQS 25 (178)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 79999999999875
No 273
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.27 E-value=0.018 Score=39.28 Aligned_cols=15 Identities=27% Similarity=0.463 Sum_probs=12.9
Q ss_pred CCCchhHHHHHHhhC
Q 030225 1 MGTGKTSLVLRFVKG 15 (181)
Q Consensus 1 ~~~GKttLl~~l~~~ 15 (181)
+|||||||++.|.+.
T Consensus 15 ~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 15 TASGKTTLAQALART 29 (211)
T ss_dssp TTSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 699999999988763
No 274
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.19 E-value=0.019 Score=39.27 Aligned_cols=16 Identities=25% Similarity=0.316 Sum_probs=13.9
Q ss_pred CCCchhHHHHHHhhCC
Q 030225 1 MGTGKTSLVLRFVKGQ 16 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~ 16 (181)
||||||||++.|...-
T Consensus 17 sGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 17 SGVGKGTVREAVFKDP 32 (208)
T ss_dssp TTSCHHHHHHHHHHST
T ss_pred CCCCHHHHHHHHHhhC
Confidence 6999999999998653
No 275
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=94.15 E-value=0.02 Score=38.06 Aligned_cols=15 Identities=40% Similarity=0.554 Sum_probs=13.0
Q ss_pred CCCchhHHHHHHhhC
Q 030225 1 MGTGKTSLVLRFVKG 15 (181)
Q Consensus 1 ~~~GKttLl~~l~~~ 15 (181)
||+|||||++.+.+.
T Consensus 47 ~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 47 PGVGKTHLAVATLKA 61 (180)
T ss_dssp SSSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 799999999988754
No 276
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.14 E-value=0.02 Score=38.83 Aligned_cols=15 Identities=27% Similarity=0.404 Sum_probs=12.8
Q ss_pred CCCchhHHHHHHhhC
Q 030225 1 MGTGKTSLVLRFVKG 15 (181)
Q Consensus 1 ~~~GKttLl~~l~~~ 15 (181)
||||||||.+.|...
T Consensus 27 ~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 27 SGSGKSSVGEAIAEA 41 (202)
T ss_dssp TTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 799999999988653
No 277
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=94.11 E-value=0.021 Score=38.61 Aligned_cols=15 Identities=33% Similarity=0.457 Sum_probs=13.0
Q ss_pred CCCchhHHHHHHhhC
Q 030225 1 MGTGKTSLVLRFVKG 15 (181)
Q Consensus 1 ~~~GKttLl~~l~~~ 15 (181)
+|+|||||++.+.+.
T Consensus 10 nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 10 PGVGKTTLIHKASEV 24 (189)
T ss_dssp CSSCHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHhh
Confidence 699999999998763
No 278
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=94.09 E-value=0.019 Score=39.63 Aligned_cols=16 Identities=31% Similarity=0.327 Sum_probs=13.5
Q ss_pred CCCchhHHHHHHhhCC
Q 030225 1 MGTGKTSLVLRFVKGQ 16 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~ 16 (181)
+|||||||++.+.+-.
T Consensus 44 NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 44 NGIGKTTLLKTISTYL 59 (214)
T ss_dssp TTSSHHHHHHHHTTSS
T ss_pred CCCCHHHHHHHHhcCC
Confidence 5999999999888653
No 279
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=94.07 E-value=0.019 Score=40.24 Aligned_cols=16 Identities=31% Similarity=0.540 Sum_probs=13.4
Q ss_pred CCCchhHHHHHHhhCC
Q 030225 1 MGTGKTSLVLRFVKGQ 16 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~ 16 (181)
+|||||||++.+.+-.
T Consensus 40 nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 40 VGCGKSSLLSALLAEM 55 (237)
T ss_dssp TTSSHHHHHHHHTTCS
T ss_pred CCCCHHHHHHHHhcCC
Confidence 5999999999887653
No 280
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.05 E-value=0.022 Score=37.63 Aligned_cols=14 Identities=21% Similarity=0.480 Sum_probs=12.4
Q ss_pred CCCchhHHHHHHhh
Q 030225 1 MGTGKTSLVLRFVK 14 (181)
Q Consensus 1 ~~~GKttLl~~l~~ 14 (181)
||||||||++.|.+
T Consensus 17 ~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 17 SGSGKSAVASEVAH 30 (175)
T ss_dssp TTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 79999999998864
No 281
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=94.02 E-value=0.02 Score=40.84 Aligned_cols=16 Identities=19% Similarity=0.245 Sum_probs=13.5
Q ss_pred CCCchhHHHHHHhhCC
Q 030225 1 MGTGKTSLVLRFVKGQ 16 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~ 16 (181)
+|||||||++.+.+-.
T Consensus 41 nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 41 SGSGKSTFLRCINFLE 56 (262)
T ss_dssp TTSSHHHHHHHHTTSS
T ss_pred CCCCHHHHHHHHhcCC
Confidence 5999999999888643
No 282
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=93.99 E-value=0.02 Score=40.63 Aligned_cols=16 Identities=25% Similarity=0.291 Sum_probs=13.6
Q ss_pred CCCchhHHHHHHhhCC
Q 030225 1 MGTGKTSLVLRFVKGQ 16 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~ 16 (181)
+|||||||++.+.+-.
T Consensus 42 nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 42 NGSGKSTLINVITGFL 57 (257)
T ss_dssp TTSSHHHHHHHHTTSS
T ss_pred CCCCHHHHHHHHhCCC
Confidence 5999999999888654
No 283
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=93.98 E-value=0.02 Score=39.37 Aligned_cols=15 Identities=33% Similarity=0.406 Sum_probs=13.4
Q ss_pred CCCchhHHHHHHhhC
Q 030225 1 MGTGKTSLVLRFVKG 15 (181)
Q Consensus 1 ~~~GKttLl~~l~~~ 15 (181)
+|||||||++.+.+.
T Consensus 31 nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 31 AGSGKTYLAMAKAVQ 45 (208)
T ss_dssp TTSSTTHHHHHHHHH
T ss_pred CCCCHHHHHHHHhcC
Confidence 599999999999875
No 284
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=93.91 E-value=0.024 Score=37.88 Aligned_cols=14 Identities=21% Similarity=0.517 Sum_probs=12.5
Q ss_pred CCCchhHHHHHHhh
Q 030225 1 MGTGKTSLVLRFVK 14 (181)
Q Consensus 1 ~~~GKttLl~~l~~ 14 (181)
|||||||+.+.|..
T Consensus 10 ~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 10 PGVGKSTVLAKVKE 23 (194)
T ss_dssp TTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 79999999998864
No 285
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=93.90 E-value=0.023 Score=39.11 Aligned_cols=15 Identities=33% Similarity=0.470 Sum_probs=13.4
Q ss_pred CCCchhHHHHHHhhC
Q 030225 1 MGTGKTSLVLRFVKG 15 (181)
Q Consensus 1 ~~~GKttLl~~l~~~ 15 (181)
||||||||++.+.+.
T Consensus 34 nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 34 FGSGKTQLAHTLAVM 48 (231)
T ss_dssp TTSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 699999999999874
No 286
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=93.90 E-value=0.023 Score=40.15 Aligned_cols=15 Identities=27% Similarity=0.337 Sum_probs=13.5
Q ss_pred CCCchhHHHHHHhhC
Q 030225 1 MGTGKTSLVLRFVKG 15 (181)
Q Consensus 1 ~~~GKttLl~~l~~~ 15 (181)
+|||||||++.+.+-
T Consensus 38 nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 38 NGAGKSTLGKILAGD 52 (250)
T ss_dssp TTSSHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHhCC
Confidence 599999999999875
No 287
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=93.88 E-value=0.022 Score=40.22 Aligned_cols=16 Identities=25% Similarity=0.304 Sum_probs=13.5
Q ss_pred CCCchhHHHHHHhhCC
Q 030225 1 MGTGKTSLVLRFVKGQ 16 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~ 16 (181)
+|||||||++.+.+-.
T Consensus 44 nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 44 SGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TTSSHHHHHHHHTTSS
T ss_pred CCCCHHHHHHHHhcCC
Confidence 5999999999887653
No 288
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=93.87 E-value=0.022 Score=40.07 Aligned_cols=15 Identities=20% Similarity=0.293 Sum_probs=13.1
Q ss_pred CCCchhHHHHHHhhC
Q 030225 1 MGTGKTSLVLRFVKG 15 (181)
Q Consensus 1 ~~~GKttLl~~l~~~ 15 (181)
+|||||||++.+.+-
T Consensus 37 nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 37 SGGGKSTIFSLLERF 51 (243)
T ss_dssp TTSSHHHHHHHHTTS
T ss_pred CCCCHHHHHHHHhcC
Confidence 599999999998864
No 289
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.85 E-value=0.022 Score=39.97 Aligned_cols=16 Identities=25% Similarity=0.225 Sum_probs=13.5
Q ss_pred CCCchhHHHHHHhhCC
Q 030225 1 MGTGKTSLVLRFVKGQ 16 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~ 16 (181)
+|||||||++.+.+-.
T Consensus 41 nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 41 NGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TTSSHHHHHHHHTTSS
T ss_pred CCCCHHHHHHHHhCCC
Confidence 5999999999888653
No 290
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=93.84 E-value=0.48 Score=33.24 Aligned_cols=83 Identities=11% Similarity=0.016 Sum_probs=52.9
Q ss_pred EEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHH
Q 030225 41 IKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEG 120 (181)
Q Consensus 41 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~~~~~~~ 120 (181)
+.+.|+|+|+... ......+..+|.+|++... +..+...+...++.+... ...+..+|.|+.+..... ...
T Consensus 111 yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~-~~~~~~~~~~~~~~l~~~--~~~~~~vv~N~~~~~~~~----~~~ 181 (263)
T 1hyq_A 111 TDILLLDAPAGLE--RSAVIAIAAAQELLLVVNP-EISSITDGLKTKIVAERL--GTKVLGVVVNRITTLGIE----MAK 181 (263)
T ss_dssp CSEEEEECCSSSS--HHHHHHHHHSSEEEEEECS-SHHHHHHHHHHHHHHHHH--TCEEEEEEEEEECTTTHH----HHH
T ss_pred CCEEEEeCCCCCC--hHHHHHHHHCCEEEEEeCC-ChhHHHHHHHHHHHHHhc--CCCeeEEEEccCCccccc----chH
Confidence 5688999997543 2234456778999999885 456677777777777655 234566889998853221 233
Q ss_pred HHHHHHcCCeEE
Q 030225 121 ELYAQENGLSFL 132 (181)
Q Consensus 121 ~~~~~~~~~~~~ 132 (181)
..+.+..+.+++
T Consensus 182 ~~~~~~~~~~~~ 193 (263)
T 1hyq_A 182 NEIEAILEAKVI 193 (263)
T ss_dssp HHHHHHTTSCEE
T ss_pred HHHHHHhCCCeE
Confidence 444455666543
No 291
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=93.84 E-value=0.022 Score=40.59 Aligned_cols=16 Identities=19% Similarity=0.291 Sum_probs=13.5
Q ss_pred CCCchhHHHHHHhhCC
Q 030225 1 MGTGKTSLVLRFVKGQ 16 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~ 16 (181)
+|||||||++.+.+-.
T Consensus 59 NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 59 SGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TTSSHHHHHHHHTTSS
T ss_pred CCCcHHHHHHHHHcCC
Confidence 5999999999888653
No 292
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=93.83 E-value=0.022 Score=40.88 Aligned_cols=16 Identities=31% Similarity=0.368 Sum_probs=13.5
Q ss_pred CCCchhHHHHHHhhCC
Q 030225 1 MGTGKTSLVLRFVKGQ 16 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~ 16 (181)
+|||||||++.+.+-.
T Consensus 43 nGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 43 NGVGKSTLFQNFNGIL 58 (275)
T ss_dssp TTSSHHHHHHHHTTSS
T ss_pred CCCCHHHHHHHHHcCC
Confidence 5999999999888643
No 293
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=93.82 E-value=0.022 Score=40.71 Aligned_cols=16 Identities=25% Similarity=0.304 Sum_probs=13.5
Q ss_pred CCCchhHHHHHHhhCC
Q 030225 1 MGTGKTSLVLRFVKGQ 16 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~ 16 (181)
+|||||||++.+.+-.
T Consensus 46 nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 46 NGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TTSCHHHHHHHHTSSS
T ss_pred CCCcHHHHHHHHhcCC
Confidence 6999999999888643
No 294
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=93.82 E-value=0.023 Score=39.61 Aligned_cols=16 Identities=38% Similarity=0.565 Sum_probs=13.5
Q ss_pred CCCchhHHHHHHhhCC
Q 030225 1 MGTGKTSLVLRFVKGQ 16 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~ 16 (181)
+|||||||++.+.+-.
T Consensus 43 nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 43 TGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TTSSHHHHHHHHTTSS
T ss_pred CCCCHHHHHHHHhCCC
Confidence 5999999999888653
No 295
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.80 E-value=0.023 Score=40.36 Aligned_cols=16 Identities=25% Similarity=0.179 Sum_probs=13.5
Q ss_pred CCCchhHHHHHHhhCC
Q 030225 1 MGTGKTSLVLRFVKGQ 16 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~ 16 (181)
+|||||||++.+.+-.
T Consensus 50 NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 50 NGAGKTTTLRIISTLI 65 (256)
T ss_dssp TTSSHHHHHHHHTTSS
T ss_pred CCCCHHHHHHHHhcCC
Confidence 5999999999988653
No 296
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=93.77 E-value=0.024 Score=40.13 Aligned_cols=16 Identities=31% Similarity=0.505 Sum_probs=13.4
Q ss_pred CCCchhHHHHHHhhCC
Q 030225 1 MGTGKTSLVLRFVKGQ 16 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~ 16 (181)
+|||||||++.+.+-.
T Consensus 35 NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 35 NGAGKSTLLARMAGMT 50 (249)
T ss_dssp TTSSHHHHHHHHTTSS
T ss_pred CCCcHHHHHHHHhCCC
Confidence 5999999999887653
No 297
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=93.76 E-value=0.014 Score=38.79 Aligned_cols=15 Identities=33% Similarity=0.503 Sum_probs=12.9
Q ss_pred CCCchhHHHHHHhhC
Q 030225 1 MGTGKTSLVLRFVKG 15 (181)
Q Consensus 1 ~~~GKttLl~~l~~~ 15 (181)
+|||||||++.|.+.
T Consensus 11 SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 11 SDSGKTTLITRMMPI 25 (171)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 689999999998864
No 298
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=93.76 E-value=0.025 Score=39.69 Aligned_cols=28 Identities=11% Similarity=0.089 Sum_probs=18.8
Q ss_pred EEEEecCCCCCHHHHHHHHHHHHHhhCCCCc
Q 030225 131 FLETSAKSAHNVNELFYEIAKRLAEVNPSRQ 161 (181)
Q Consensus 131 ~~~~Sa~~~~gi~~~~~~l~~~~~~~~~~~~ 161 (181)
++.+.+.. -+++++.+.+.+.+.-++.+
T Consensus 213 ~~~id~~~---~~~v~~~i~~~l~~~~~~~~ 240 (246)
T 2bbw_A 213 LHQFSGTE---TNKIWPYVYTLFSNKITPIQ 240 (246)
T ss_dssp EEEEECSC---HHHHHHHHHHHHHTTSCCCC
T ss_pred EEEECCCC---cHHHHHHHHHHHHhhCCCCC
Confidence 55666542 38999999888876555443
No 299
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=93.75 E-value=0.094 Score=36.77 Aligned_cols=67 Identities=13% Similarity=0.135 Sum_probs=46.8
Q ss_pred EEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhCC------CCceEEEEEeCCCC
Q 030225 40 TIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGN------PNLIMFLVANKVDL 109 (181)
Q Consensus 40 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~------~~~p~ivi~nK~D~ 109 (181)
.+.+.++|+|+... ......+..+|.+|++... +..+...+...+..+..... +..+..+|+|+.+.
T Consensus 113 ~yD~viiD~p~~~~--~~~~~~l~~ad~vi~v~~~-~~~s~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~N~~~~ 185 (260)
T 3q9l_A 113 DFEFIVCDSPAGIE--TGALMALYFADEAIITTNP-EVSSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNP 185 (260)
T ss_dssp TCSEEEEECCSSSS--HHHHHHHHTCSEEEEEECS-SHHHHHHHHHHHHHHTTSSHHHHTTCSCCEEEEEEEEECH
T ss_pred CCCEEEEcCCCCCC--HHHHHHHHhCCEEEEEecC-ChhHHHHHHHHHHHHHHhccccccccCCcceEEEEecCCc
Confidence 46788999998543 2445567789999999986 45667777776666644321 22567888999885
No 300
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=93.71 E-value=0.026 Score=40.31 Aligned_cols=15 Identities=27% Similarity=0.452 Sum_probs=13.5
Q ss_pred CCCchhHHHHHHhhC
Q 030225 1 MGTGKTSLVLRFVKG 15 (181)
Q Consensus 1 ~~~GKttLl~~l~~~ 15 (181)
+|||||||++.+.+-
T Consensus 55 NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 55 NGSGKSTLSATLAGR 69 (267)
T ss_dssp TTSSHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHhCC
Confidence 599999999999875
No 301
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=93.70 E-value=0.11 Score=33.03 Aligned_cols=15 Identities=20% Similarity=0.233 Sum_probs=12.1
Q ss_pred CCCchhHHHHHHhhC
Q 030225 1 MGTGKTSLVLRFVKG 15 (181)
Q Consensus 1 ~~~GKttLl~~l~~~ 15 (181)
||+|||+|++.+...
T Consensus 36 ~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 36 AGSPFETVARYFHKN 50 (143)
T ss_dssp TTCCHHHHHGGGCCT
T ss_pred CCccHHHHHHHHHHh
Confidence 799999999776643
No 302
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=93.70 E-value=0.025 Score=37.82 Aligned_cols=14 Identities=36% Similarity=0.415 Sum_probs=12.5
Q ss_pred CCCchhHHHHHHhh
Q 030225 1 MGTGKTSLVLRFVK 14 (181)
Q Consensus 1 ~~~GKttLl~~l~~ 14 (181)
|||||||+.+.|..
T Consensus 14 ~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 14 PATGKTTLSQALAT 27 (193)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 79999999999864
No 303
>3uc9_A Increased recombination centers protein 6; rossmann-fold, clathrin accessory factor; 1.80A {Saccharomyces cerevisiae}
Probab=93.70 E-value=0.073 Score=37.07 Aligned_cols=73 Identities=14% Similarity=0.137 Sum_probs=36.5
Q ss_pred CCCchhHHHHHHhhCCCCCccccceeeeEEEEEEEECCeEEEEEEE-eC-CChhhh----hcc-chhhccCCcEEEEEEE
Q 030225 1 MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIW-DT-AGQERY----HSL-APMYYRGAAAAVVVYD 73 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~-D~-~G~~~~----~~~-~~~~~~~~d~~i~v~d 73 (181)
|+.|||+|++++++...... .+ .....+...+....+-|| |. +....+ ... .........++|+|++
T Consensus 38 ~~~~~~~~~~~lf~~~~~~~---~i---~k~v~w~TKYYsa~V~IwVDe~~~l~~W~~EF~SdEA~EVR~viggII~~f~ 111 (233)
T 3uc9_A 38 HNFLKTQFLQDLFHCSSTGI---SI---VKDQTWENRYYKVHFDLYIDSCKDIPVWVEEFITPECEPLRNVMAGIILITD 111 (233)
T ss_dssp GHHHHHHHHHHHHCCCCCSS---CE---EEEEEEECSSCEEEEEEEEEEESCHHHHHHHHTSGGGHHHHHTEEEEEEEEC
T ss_pred ccccHHHHHHHHhccccccc---cc---ccCCeeeeceEEEEcceEEEecCCHHHHHHHhcCHHHHHHHHhcceEEEEEe
Confidence 46799999999998742211 11 122333445555555554 32 222111 111 1111223478999997
Q ss_pred CCChhH
Q 030225 74 ITSMDS 79 (181)
Q Consensus 74 ~~~~~s 79 (181)
...+..
T Consensus 112 ~p~~~~ 117 (233)
T 3uc9_A 112 IRQTKP 117 (233)
T ss_dssp HHHHCG
T ss_pred CCCcch
Confidence 554433
No 304
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=93.69 E-value=0.025 Score=37.69 Aligned_cols=14 Identities=21% Similarity=0.188 Sum_probs=12.4
Q ss_pred CCCchhHHHHHHhh
Q 030225 1 MGTGKTSLVLRFVK 14 (181)
Q Consensus 1 ~~~GKttLl~~l~~ 14 (181)
|||||||+.+.|..
T Consensus 12 ~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 12 PGVGSTTSSQLAMD 25 (192)
T ss_dssp TTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 79999999999864
No 305
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=93.69 E-value=0.027 Score=38.16 Aligned_cols=17 Identities=12% Similarity=0.038 Sum_probs=13.9
Q ss_pred CCHHHHHHHHHHHHHhh
Q 030225 140 HNVNELFYEIAKRLAEV 156 (181)
Q Consensus 140 ~gi~~~~~~l~~~~~~~ 156 (181)
..++++.+.|+..+.+.
T Consensus 179 ~~~~e~v~~i~~~l~~~ 195 (200)
T 3uie_A 179 TSPIEMAEKVVGYLDNK 195 (200)
T ss_dssp CCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHc
Confidence 47999999998888665
No 306
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.67 E-value=0.026 Score=41.29 Aligned_cols=15 Identities=13% Similarity=0.118 Sum_probs=13.0
Q ss_pred CCCchhHHHHHHhhC
Q 030225 1 MGTGKTSLVLRFVKG 15 (181)
Q Consensus 1 ~~~GKttLl~~l~~~ 15 (181)
+|||||||++.|.+.
T Consensus 99 sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 99 VAVGKSTTARVLQAL 113 (312)
T ss_dssp TTSCHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHhh
Confidence 699999999988763
No 307
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=93.63 E-value=0.028 Score=37.89 Aligned_cols=25 Identities=20% Similarity=0.300 Sum_probs=17.3
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHHHHh
Q 030225 129 LSFLETSAKSAHNVNELFYEIAKRLAE 155 (181)
Q Consensus 129 ~~~~~~Sa~~~~gi~~~~~~l~~~~~~ 155 (181)
...+.+.+.. .++++.+.+.+.+..
T Consensus 176 ~~~~~Id~~~--~~~~v~~~I~~~l~~ 200 (205)
T 2jaq_A 176 FPFFVVDAEL--DVKTQIELIMNKLNS 200 (205)
T ss_dssp SCEEEEETTS--CHHHHHHHHHHHHHH
T ss_pred CcEEEEECCC--CHHHHHHHHHHHHHH
Confidence 3456665433 789999988887754
No 308
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=93.63 E-value=0.026 Score=40.18 Aligned_cols=15 Identities=20% Similarity=0.386 Sum_probs=13.2
Q ss_pred CCCchhHHHHHHhhC
Q 030225 1 MGTGKTSLVLRFVKG 15 (181)
Q Consensus 1 ~~~GKttLl~~l~~~ 15 (181)
+|||||||++.+.+-
T Consensus 55 nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 55 TGSGKSTIAKLLYRF 69 (260)
T ss_dssp TTSSHHHHHHHHTTS
T ss_pred CCCCHHHHHHHHhcc
Confidence 599999999998864
No 309
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=93.63 E-value=0.026 Score=40.46 Aligned_cols=16 Identities=19% Similarity=0.260 Sum_probs=13.5
Q ss_pred CCCchhHHHHHHhhCC
Q 030225 1 MGTGKTSLVLRFVKGQ 16 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~ 16 (181)
+|||||||++.+.+-.
T Consensus 54 nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 54 NGSGKSTVAALLQNLY 69 (271)
T ss_dssp TTSSHHHHHHHHTTSS
T ss_pred CCCCHHHHHHHHhcCC
Confidence 5999999999888643
No 310
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=93.61 E-value=0.027 Score=40.07 Aligned_cols=14 Identities=21% Similarity=0.617 Sum_probs=12.6
Q ss_pred CCCchhHHHHHHhh
Q 030225 1 MGTGKTSLVLRFVK 14 (181)
Q Consensus 1 ~~~GKttLl~~l~~ 14 (181)
+|||||||++.+.+
T Consensus 34 ~GsGKSTll~~l~g 47 (261)
T 2eyu_A 34 TGSGKSTTIASMID 47 (261)
T ss_dssp TTCSHHHHHHHHHH
T ss_pred CCccHHHHHHHHHH
Confidence 69999999999876
No 311
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=93.60 E-value=0.026 Score=40.62 Aligned_cols=16 Identities=31% Similarity=0.341 Sum_probs=13.5
Q ss_pred CCCchhHHHHHHhhCC
Q 030225 1 MGTGKTSLVLRFVKGQ 16 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~ 16 (181)
+|||||||++.+.+-.
T Consensus 56 NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 56 NGAGKTTLLNILNAYE 71 (279)
T ss_dssp TTSSHHHHHHHHTTSS
T ss_pred CCCcHHHHHHHHhCCC
Confidence 5999999999888643
No 312
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=93.55 E-value=0.58 Score=32.17 Aligned_cols=65 Identities=15% Similarity=0.071 Sum_probs=46.0
Q ss_pred EEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCc
Q 030225 41 IKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLE 110 (181)
Q Consensus 41 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~ 110 (181)
+.+.++|+|+... ......+..+|.+|++... +..+...+...+..+... ...+..+|.|+.+..
T Consensus 112 yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~-~~~~~~~~~~~~~~l~~~--~~~~~~vv~N~~~~~ 176 (237)
T 1g3q_A 112 FDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNP-EISCLTDTMKVGIVLKKA--GLAILGFVLNRYGRS 176 (237)
T ss_dssp CSEEEEECCSSSS--HHHHHHHTTCSEEEEEECS-CHHHHHHHHHHHHHHHHT--TCEEEEEEEEEETSC
T ss_pred CCEEEEECCCCcC--HHHHHHHHHCCeEEEEecC-CcccHHHHHHHHHHHHhC--CCceEEEEEecCCcc
Confidence 5688999987543 2335567889999999886 456677777777777654 234567889998854
No 313
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=93.51 E-value=0.028 Score=39.86 Aligned_cols=16 Identities=25% Similarity=0.329 Sum_probs=13.5
Q ss_pred CCCchhHHHHHHhhCC
Q 030225 1 MGTGKTSLVLRFVKGQ 16 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~ 16 (181)
+|||||||++.+.+-.
T Consensus 40 nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 40 NGCGKSTLLDLLLGIH 55 (253)
T ss_dssp SSSSHHHHHHHHTTSS
T ss_pred CCCCHHHHHHHHhCCC
Confidence 5999999999888653
No 314
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=93.50 E-value=0.028 Score=40.15 Aligned_cols=15 Identities=27% Similarity=0.375 Sum_probs=13.0
Q ss_pred CCCchhHHHHHHhhC
Q 030225 1 MGTGKTSLVLRFVKG 15 (181)
Q Consensus 1 ~~~GKttLl~~l~~~ 15 (181)
+|||||||++.+.+-
T Consensus 42 nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 42 TGSGKSTLLQIVAGL 56 (266)
T ss_dssp TTSSHHHHHHHHTTS
T ss_pred CCCcHHHHHHHHhCC
Confidence 599999999988764
No 315
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=93.39 E-value=0.031 Score=38.97 Aligned_cols=14 Identities=43% Similarity=0.778 Sum_probs=12.4
Q ss_pred CCCchhHHHHHHhh
Q 030225 1 MGTGKTSLVLRFVK 14 (181)
Q Consensus 1 ~~~GKttLl~~l~~ 14 (181)
+|||||||++.+..
T Consensus 39 nGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 39 TGTGKTTFAAQFIY 52 (251)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 69999999998873
No 316
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=93.39 E-value=0.026 Score=36.49 Aligned_cols=16 Identities=31% Similarity=0.528 Sum_probs=13.5
Q ss_pred CCCchhHHHHHHhhCC
Q 030225 1 MGTGKTSLVLRFVKGQ 16 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~ 16 (181)
+|+|||||++.+.+.-
T Consensus 45 ~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 45 EGAGKSHLLQAWVAQA 60 (149)
T ss_dssp STTTTCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 6999999999988643
No 317
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=93.35 E-value=0.03 Score=39.90 Aligned_cols=16 Identities=31% Similarity=0.327 Sum_probs=13.7
Q ss_pred CCCchhHHHHHHhhCC
Q 030225 1 MGTGKTSLVLRFVKGQ 16 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~ 16 (181)
+|||||||++.+.+-.
T Consensus 39 NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 39 NGSGKTTLLRAISGLL 54 (263)
T ss_dssp TTSSHHHHHHHHTTSS
T ss_pred CCCCHHHHHHHHhCCC
Confidence 5999999999888754
No 318
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=93.32 E-value=0.034 Score=37.63 Aligned_cols=14 Identities=50% Similarity=0.788 Sum_probs=12.4
Q ss_pred CCCchhHHHHHHhh
Q 030225 1 MGTGKTSLVLRFVK 14 (181)
Q Consensus 1 ~~~GKttLl~~l~~ 14 (181)
|||||||+.+.|..
T Consensus 34 ~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 34 MGAGKTTLGKAFAR 47 (199)
T ss_dssp TTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 79999999998864
No 319
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=93.30 E-value=0.2 Score=33.76 Aligned_cols=15 Identities=33% Similarity=0.578 Sum_probs=12.9
Q ss_pred CCCchhHHHHHHhhC
Q 030225 1 MGTGKTSLVLRFVKG 15 (181)
Q Consensus 1 ~~~GKttLl~~l~~~ 15 (181)
||+|||+|++.+...
T Consensus 47 ~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 47 PGTGKTATAIALARD 61 (226)
T ss_dssp TTSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 799999999988753
No 320
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=93.29 E-value=0.019 Score=39.14 Aligned_cols=14 Identities=36% Similarity=0.536 Sum_probs=12.3
Q ss_pred CCCchhHHHHHHhh
Q 030225 1 MGTGKTSLVLRFVK 14 (181)
Q Consensus 1 ~~~GKttLl~~l~~ 14 (181)
||||||||++.|..
T Consensus 9 ~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 9 DGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 68999999999864
No 321
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=93.28 E-value=0.033 Score=41.57 Aligned_cols=16 Identities=31% Similarity=0.364 Sum_probs=13.8
Q ss_pred CCCchhHHHHHHhhCC
Q 030225 1 MGTGKTSLVLRFVKGQ 16 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~ 16 (181)
+|||||||++.+.+-.
T Consensus 39 sGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 39 SGCGKTTLLRCLAGFE 54 (359)
T ss_dssp TTSSHHHHHHHHHTSS
T ss_pred CCchHHHHHHHHhcCC
Confidence 6999999999988754
No 322
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=93.27 E-value=0.03 Score=41.07 Aligned_cols=16 Identities=38% Similarity=0.698 Sum_probs=13.9
Q ss_pred CCCchhHHHHHHhhCC
Q 030225 1 MGTGKTSLVLRFVKGQ 16 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~ 16 (181)
+|||||||++.|.+..
T Consensus 13 ~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 13 LGAGKTTLLRHILNEQ 28 (318)
T ss_dssp SSSSCHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHHhhc
Confidence 5999999999999753
No 323
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=93.19 E-value=0.035 Score=41.40 Aligned_cols=16 Identities=25% Similarity=0.376 Sum_probs=13.6
Q ss_pred CCCchhHHHHHHhhCC
Q 030225 1 MGTGKTSLVLRFVKGQ 16 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~ 16 (181)
+|||||||++.+.+-.
T Consensus 50 nGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 50 SGSGKTTILRLIAGLE 65 (355)
T ss_dssp TTSSHHHHHHHHHTSS
T ss_pred CCCcHHHHHHHHhCCC
Confidence 6999999999988653
No 324
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=93.15 E-value=0.036 Score=40.43 Aligned_cols=15 Identities=27% Similarity=0.262 Sum_probs=13.0
Q ss_pred CCCchhHHHHHHhhC
Q 030225 1 MGTGKTSLVLRFVKG 15 (181)
Q Consensus 1 ~~~GKttLl~~l~~~ 15 (181)
+|+|||||++.|.+-
T Consensus 135 sGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 135 PNTGKSMLCNSLIHF 149 (305)
T ss_dssp SSSSHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHhhh
Confidence 699999999998753
No 325
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=93.12 E-value=0.038 Score=37.41 Aligned_cols=14 Identities=29% Similarity=0.624 Sum_probs=12.8
Q ss_pred CCCchhHHHHHHhh
Q 030225 1 MGTGKTSLVLRFVK 14 (181)
Q Consensus 1 ~~~GKttLl~~l~~ 14 (181)
+||||||+.+.|.+
T Consensus 10 ~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 10 IGCGKSTVAQMFRE 23 (204)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHH
Confidence 69999999999876
No 326
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=93.10 E-value=0.024 Score=39.31 Aligned_cols=15 Identities=33% Similarity=0.581 Sum_probs=8.2
Q ss_pred CCCchhHHHHHHh-hC
Q 030225 1 MGTGKTSLVLRFV-KG 15 (181)
Q Consensus 1 ~~~GKttLl~~l~-~~ 15 (181)
+|||||||++.|. +.
T Consensus 36 ~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 36 SGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CC----CHHHHHHC--
T ss_pred CCCCHHHHHHHHHhcC
Confidence 6999999999998 54
No 327
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.08 E-value=0.039 Score=37.51 Aligned_cols=15 Identities=33% Similarity=0.439 Sum_probs=13.2
Q ss_pred CCCchhHHHHHHhhC
Q 030225 1 MGTGKTSLVLRFVKG 15 (181)
Q Consensus 1 ~~~GKttLl~~l~~~ 15 (181)
||||||||++.|.+.
T Consensus 30 ~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 30 TNSGKTTLAKNLQKH 44 (207)
T ss_dssp TTSSHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHh
Confidence 699999999998764
No 328
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=93.07 E-value=0.037 Score=36.82 Aligned_cols=14 Identities=29% Similarity=0.470 Sum_probs=12.4
Q ss_pred CCCchhHHHHHHhh
Q 030225 1 MGTGKTSLVLRFVK 14 (181)
Q Consensus 1 ~~~GKttLl~~l~~ 14 (181)
|||||||+.+.|..
T Consensus 13 ~GsGKST~~~~La~ 26 (186)
T 3cm0_A 13 PGAGKGTQASRLAQ 26 (186)
T ss_dssp TTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 79999999998864
No 329
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=93.05 E-value=0.039 Score=37.41 Aligned_cols=14 Identities=29% Similarity=0.344 Sum_probs=12.5
Q ss_pred CCCchhHHHHHHhh
Q 030225 1 MGTGKTSLVLRFVK 14 (181)
Q Consensus 1 ~~~GKttLl~~l~~ 14 (181)
|||||||+.+.|..
T Consensus 13 ~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 13 DGSGKSSQATLLKD 26 (213)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 79999999999865
No 330
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=93.03 E-value=0.039 Score=38.70 Aligned_cols=14 Identities=14% Similarity=0.470 Sum_probs=12.5
Q ss_pred CCCchhHHHHHHhh
Q 030225 1 MGTGKTSLVLRFVK 14 (181)
Q Consensus 1 ~~~GKttLl~~l~~ 14 (181)
+|||||||++.|.+
T Consensus 34 ~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 34 TASGKSTVCEKIME 47 (245)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 59999999999876
No 331
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=93.01 E-value=0.04 Score=37.37 Aligned_cols=14 Identities=29% Similarity=0.430 Sum_probs=12.4
Q ss_pred CCCchhHHHHHHhh
Q 030225 1 MGTGKTSLVLRFVK 14 (181)
Q Consensus 1 ~~~GKttLl~~l~~ 14 (181)
+|||||||++.|.+
T Consensus 31 ~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 31 SRSGKTTLANQLSQ 44 (201)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 69999999998875
No 332
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=93.00 E-value=0.039 Score=41.23 Aligned_cols=16 Identities=31% Similarity=0.337 Sum_probs=13.6
Q ss_pred CCCchhHHHHHHhhCC
Q 030225 1 MGTGKTSLVLRFVKGQ 16 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~ 16 (181)
+|||||||++.+.+-.
T Consensus 38 nGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 38 SGCGKTTTLLMLAGIY 53 (359)
T ss_dssp TTSSHHHHHHHHHTSS
T ss_pred CCchHHHHHHHHHCCC
Confidence 6999999999988643
No 333
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=93.00 E-value=0.041 Score=36.71 Aligned_cols=14 Identities=36% Similarity=0.676 Sum_probs=12.4
Q ss_pred CCCchhHHHHHHhh
Q 030225 1 MGTGKTSLVLRFVK 14 (181)
Q Consensus 1 ~~~GKttLl~~l~~ 14 (181)
|||||||+++.|..
T Consensus 22 ~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 22 PGSGKTTIATRLAD 35 (186)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 79999999998864
No 334
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=92.98 E-value=0.039 Score=41.26 Aligned_cols=16 Identities=25% Similarity=0.395 Sum_probs=13.6
Q ss_pred CCCchhHHHHHHhhCC
Q 030225 1 MGTGKTSLVLRFVKGQ 16 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~ 16 (181)
+|||||||++.+.+-.
T Consensus 38 nGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 38 SGSGKSTLLYTIAGIY 53 (362)
T ss_dssp TTSSHHHHHHHHHTSS
T ss_pred CCchHHHHHHHHhcCC
Confidence 6999999999988643
No 335
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=92.95 E-value=0.04 Score=41.39 Aligned_cols=16 Identities=25% Similarity=0.260 Sum_probs=13.7
Q ss_pred CCCchhHHHHHHhhCC
Q 030225 1 MGTGKTSLVLRFVKGQ 16 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~ 16 (181)
+|||||||++.+.+-.
T Consensus 38 nGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 38 SGCGKTTTLRMIAGLE 53 (372)
T ss_dssp TTSSHHHHHHHHHTSS
T ss_pred CCcHHHHHHHHHHcCC
Confidence 6999999999988653
No 336
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=92.90 E-value=0.043 Score=36.79 Aligned_cols=14 Identities=21% Similarity=0.458 Sum_probs=12.5
Q ss_pred CCCchhHHHHHHhh
Q 030225 1 MGTGKTSLVLRFVK 14 (181)
Q Consensus 1 ~~~GKttLl~~l~~ 14 (181)
|||||||+.++|..
T Consensus 9 ~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 9 DGSGKSTQIQLLAQ 22 (197)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 69999999999875
No 337
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=92.88 E-value=0.042 Score=37.77 Aligned_cols=14 Identities=29% Similarity=0.482 Sum_probs=12.4
Q ss_pred CCCchhHHHHHHhh
Q 030225 1 MGTGKTSLVLRFVK 14 (181)
Q Consensus 1 ~~~GKttLl~~l~~ 14 (181)
|||||||+++.|.+
T Consensus 14 ~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 14 SGAGKGTLCKAMAE 27 (227)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 79999999998865
No 338
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=92.86 E-value=0.042 Score=41.27 Aligned_cols=15 Identities=27% Similarity=0.240 Sum_probs=13.2
Q ss_pred CCCchhHHHHHHhhC
Q 030225 1 MGTGKTSLVLRFVKG 15 (181)
Q Consensus 1 ~~~GKttLl~~l~~~ 15 (181)
+|||||||++.+.+-
T Consensus 46 nGsGKSTLLr~iaGl 60 (372)
T 1v43_A 46 SGCGKTTTLRMIAGL 60 (372)
T ss_dssp TTSSHHHHHHHHHTS
T ss_pred CCChHHHHHHHHHcC
Confidence 699999999998864
No 339
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.85 E-value=0.26 Score=36.27 Aligned_cols=14 Identities=29% Similarity=0.555 Sum_probs=12.7
Q ss_pred CCCchhHHHHHHhh
Q 030225 1 MGTGKTSLVLRFVK 14 (181)
Q Consensus 1 ~~~GKttLl~~l~~ 14 (181)
||+|||||++.+.+
T Consensus 45 ~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 45 NGTGKKTRCMALLE 58 (354)
T ss_dssp TTSSHHHHHHTHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 69999999998876
No 340
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=92.84 E-value=0.041 Score=39.73 Aligned_cols=14 Identities=43% Similarity=0.520 Sum_probs=12.7
Q ss_pred CCCchhHHHHHHhh
Q 030225 1 MGTGKTSLVLRFVK 14 (181)
Q Consensus 1 ~~~GKttLl~~l~~ 14 (181)
||||||||.++|..
T Consensus 42 sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 42 PGSGKTSLRSAIFE 55 (287)
T ss_dssp TTSCTHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 79999999999974
No 341
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=92.81 E-value=0.043 Score=41.33 Aligned_cols=16 Identities=25% Similarity=0.349 Sum_probs=13.7
Q ss_pred CCCchhHHHHHHhhCC
Q 030225 1 MGTGKTSLVLRFVKGQ 16 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~ 16 (181)
+|||||||++.+.+-.
T Consensus 38 sGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 38 SGCGKSTLLRMIAGLE 53 (381)
T ss_dssp TTSSHHHHHHHHHTSS
T ss_pred CCchHHHHHHHHHcCC
Confidence 6999999999988644
No 342
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=92.80 E-value=0.045 Score=36.53 Aligned_cols=14 Identities=36% Similarity=0.536 Sum_probs=12.3
Q ss_pred CCCchhHHHHHHhh
Q 030225 1 MGTGKTSLVLRFVK 14 (181)
Q Consensus 1 ~~~GKttLl~~l~~ 14 (181)
|||||||+.+.|..
T Consensus 12 ~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 12 PGAGKGTQCARIVE 25 (196)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 79999999998864
No 343
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=92.78 E-value=0.046 Score=37.09 Aligned_cols=14 Identities=36% Similarity=0.705 Sum_probs=12.7
Q ss_pred CCCchhHHHHHHhh
Q 030225 1 MGTGKTSLVLRFVK 14 (181)
Q Consensus 1 ~~~GKttLl~~l~~ 14 (181)
|||||||+.+.|.+
T Consensus 11 ~GsGKST~~~~La~ 24 (206)
T 1jjv_A 11 IGSGKTTIANLFTD 24 (206)
T ss_dssp TTSCHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHH
Confidence 69999999999976
No 344
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=92.76 E-value=0.045 Score=39.23 Aligned_cols=15 Identities=33% Similarity=0.346 Sum_probs=13.4
Q ss_pred CCCchhHHHHHHhhC
Q 030225 1 MGTGKTSLVLRFVKG 15 (181)
Q Consensus 1 ~~~GKttLl~~l~~~ 15 (181)
||+|||||++.+.+.
T Consensus 53 ~GtGKTtLakala~~ 67 (274)
T 2x8a_A 53 PGCGKTLLAKAVANE 67 (274)
T ss_dssp TTSCHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHH
Confidence 799999999999864
No 345
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=92.76 E-value=0.043 Score=36.35 Aligned_cols=14 Identities=36% Similarity=0.458 Sum_probs=12.4
Q ss_pred CCCchhHHHHHHhh
Q 030225 1 MGTGKTSLVLRFVK 14 (181)
Q Consensus 1 ~~~GKttLl~~l~~ 14 (181)
|||||||+.+.|..
T Consensus 20 ~GsGKst~~~~l~~ 33 (180)
T 3iij_A 20 PGVGKTTLGKELAS 33 (180)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 79999999998874
No 346
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=92.75 E-value=0.042 Score=39.78 Aligned_cols=15 Identities=40% Similarity=0.638 Sum_probs=13.1
Q ss_pred CCCchhHHHHHHhhC
Q 030225 1 MGTGKTSLVLRFVKG 15 (181)
Q Consensus 1 ~~~GKttLl~~l~~~ 15 (181)
+|||||||++.+.+-
T Consensus 73 NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 73 TGAGKTSLLMMIMGE 87 (290)
T ss_dssp TTSSHHHHHHHHTTS
T ss_pred CCCcHHHHHHHHhcC
Confidence 599999999988764
No 347
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=92.74 E-value=0.047 Score=36.01 Aligned_cols=14 Identities=43% Similarity=0.757 Sum_probs=12.3
Q ss_pred CCCchhHHHHHHhh
Q 030225 1 MGTGKTSLVLRFVK 14 (181)
Q Consensus 1 ~~~GKttLl~~l~~ 14 (181)
|||||||+.+.|..
T Consensus 13 ~GsGKsTla~~La~ 26 (175)
T 1via_A 13 MGSGKSTLARALAK 26 (175)
T ss_dssp TTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 79999999998864
No 348
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=92.69 E-value=0.32 Score=33.65 Aligned_cols=65 Identities=14% Similarity=0.040 Sum_probs=46.6
Q ss_pred EEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCC
Q 030225 40 TIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDL 109 (181)
Q Consensus 40 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~ 109 (181)
.+.+.|+|+|+.... .....+..+|.++++... +..++..+....+.+.... -..+.++.|+.+.
T Consensus 131 ~yD~viiD~pp~~~~--~~~~~l~~aD~viiv~~~-~~~s~~~~~~~~~~~~~~~--~~~~~~v~N~~~~ 195 (254)
T 3kjh_A 131 KKEAVVMDMGAGIEH--LTRGTAKAVDMMIAVIEP-NLNSIKTGLNIEKLAGDLG--IKKVRYVINKVRN 195 (254)
T ss_dssp CCSEEEEEECTTCTT--CCHHHHTTCSEEEEEECS-SHHHHHHHHHHHHHHHHHT--CSCEEEEEEEECC
T ss_pred CCCEEEEeCCCcccH--HHHHHHHHCCEEEEecCC-CHHHHHHHHHHHHHHHHcC--CccEEEEEeCCCC
Confidence 467889999986432 445667889999999986 4566777776666555543 2457888999873
No 349
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=92.67 E-value=0.046 Score=40.91 Aligned_cols=16 Identities=25% Similarity=0.302 Sum_probs=13.5
Q ss_pred CCCchhHHHHHHhhCC
Q 030225 1 MGTGKTSLVLRFVKGQ 16 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~ 16 (181)
+|||||||++.+.+-.
T Consensus 63 nGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 63 SGAGKSTLIRCVNLLE 78 (366)
T ss_dssp TTSSHHHHHHHHHTSS
T ss_pred CCchHHHHHHHHhcCC
Confidence 6999999999888643
No 350
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=92.64 E-value=0.046 Score=40.77 Aligned_cols=15 Identities=20% Similarity=0.421 Sum_probs=13.0
Q ss_pred CCCchhHHHHHHhhC
Q 030225 1 MGTGKTSLVLRFVKG 15 (181)
Q Consensus 1 ~~~GKttLl~~l~~~ 15 (181)
+|||||||++.+++.
T Consensus 132 tGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 132 TGSGKSTTLAAMLDY 146 (356)
T ss_dssp TTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHhc
Confidence 699999999998763
No 351
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=92.60 E-value=0.046 Score=37.14 Aligned_cols=25 Identities=12% Similarity=0.458 Sum_probs=17.3
Q ss_pred eEEEEecCCCCCHHHHHHHHHHHHHhh
Q 030225 130 SFLETSAKSAHNVNELFYEIAKRLAEV 156 (181)
Q Consensus 130 ~~~~~Sa~~~~gi~~~~~~l~~~~~~~ 156 (181)
..+.+.+. ..++++.+.+.+.+.+.
T Consensus 176 ~~~~Id~~--~~~~~~~~~i~~~l~~~ 200 (212)
T 2wwf_A 176 YWINIDAT--RKIEDIHNDIVKEVTKI 200 (212)
T ss_dssp TEEEEECS--SCHHHHHHHHHHHHTTS
T ss_pred CEEEEECC--CCHHHHHHHHHHHHHHh
Confidence 35555543 56999999998877554
No 352
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=92.58 E-value=0.05 Score=36.29 Aligned_cols=14 Identities=29% Similarity=0.479 Sum_probs=12.5
Q ss_pred CCCchhHHHHHHhh
Q 030225 1 MGTGKTSLVLRFVK 14 (181)
Q Consensus 1 ~~~GKttLl~~l~~ 14 (181)
|||||||+.+.|..
T Consensus 9 ~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 9 DGSGKTTQAKKLYE 22 (195)
T ss_dssp TTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 79999999998865
No 353
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=92.57 E-value=0.046 Score=40.29 Aligned_cols=16 Identities=25% Similarity=0.393 Sum_probs=13.6
Q ss_pred CCCchhHHHHHHhhCC
Q 030225 1 MGTGKTSLVLRFVKGQ 16 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~ 16 (181)
+|||||||++.+.+.-
T Consensus 180 ~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 180 TGSGKTTYIKSIMEFI 195 (330)
T ss_dssp TTSCHHHHHHHGGGGS
T ss_pred CCCCHHHHHHHHhCCC
Confidence 6999999999988653
No 354
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=92.57 E-value=0.048 Score=39.73 Aligned_cols=15 Identities=13% Similarity=0.118 Sum_probs=13.0
Q ss_pred CCCchhHHHHHHhhC
Q 030225 1 MGTGKTSLVLRFVKG 15 (181)
Q Consensus 1 ~~~GKttLl~~l~~~ 15 (181)
+|||||||++.|.+.
T Consensus 89 ~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 89 VAVGKSTTARVLQAL 103 (308)
T ss_dssp TTSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 699999999988763
No 355
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=92.56 E-value=0.049 Score=38.27 Aligned_cols=15 Identities=33% Similarity=0.355 Sum_probs=13.4
Q ss_pred CCCchhHHHHHHhhC
Q 030225 1 MGTGKTSLVLRFVKG 15 (181)
Q Consensus 1 ~~~GKttLl~~l~~~ 15 (181)
||+|||||++.+.+.
T Consensus 58 ~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 58 PGVGKTHLARAVAGE 72 (254)
T ss_dssp TTSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 799999999999864
No 356
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=92.52 E-value=0.051 Score=37.33 Aligned_cols=15 Identities=47% Similarity=0.698 Sum_probs=13.0
Q ss_pred CCCchhHHHHHHhhC
Q 030225 1 MGTGKTSLVLRFVKG 15 (181)
Q Consensus 1 ~~~GKttLl~~l~~~ 15 (181)
||+|||||++.+...
T Consensus 32 ~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 32 PGTGKTIFSLHFIAK 46 (235)
T ss_dssp TTSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 699999999998853
No 357
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=92.50 E-value=0.036 Score=41.20 Aligned_cols=16 Identities=25% Similarity=0.243 Sum_probs=13.6
Q ss_pred CCCchhHHHHHHhhCC
Q 030225 1 MGTGKTSLVLRFVKGQ 16 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~ 16 (181)
+|||||||++.+.+-.
T Consensus 35 nGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 35 TGAGKTLFLELIAGFH 50 (348)
T ss_dssp CTHHHHHHHHHHHTSS
T ss_pred CCccHHHHHHHHHcCC
Confidence 6999999999988643
No 358
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=92.49 E-value=0.049 Score=36.19 Aligned_cols=14 Identities=50% Similarity=0.695 Sum_probs=12.4
Q ss_pred CCCchhHHHHHHhh
Q 030225 1 MGTGKTSLVLRFVK 14 (181)
Q Consensus 1 ~~~GKttLl~~l~~ 14 (181)
|||||||+.+.|..
T Consensus 14 ~GsGKst~a~~La~ 27 (185)
T 3trf_A 14 MGAGKTSVGSQLAK 27 (185)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 79999999999864
No 359
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=92.41 E-value=0.3 Score=34.44 Aligned_cols=91 Identities=18% Similarity=0.133 Sum_probs=51.7
Q ss_pred eEEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEE-EEEeCCCCc-----cc
Q 030225 39 VTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMF-LVANKVDLE-----EK 112 (181)
Q Consensus 39 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i-vi~nK~D~~-----~~ 112 (181)
..+.+.|+|+|+...........+..+|.+|++..... .+...+...++.+... +.+++ +|.|+.|.. ..
T Consensus 127 ~~yD~ViID~pp~~~~~~~~~~~~~~aD~viiv~~~~~-~s~~~~~~~~~~l~~~---~~~~~gvV~N~~~~~~~~~~~~ 202 (262)
T 2ph1_A 127 GELDHLLIDLPPGTGDAPLTVMQDAKPTGVVVVSTPQE-LTAVIVEKAINMAEET---NTSVLGLVENMSYFVCPNCGHK 202 (262)
T ss_dssp CSCSEEEEECCSSSSSHHHHHHHHHCCSEEEEEECSSS-CCHHHHHHHHHHHHTT---TCCEEEEEETTCCEECTTTCCE
T ss_pred cCCCEEEEECcCCCchHHHHHHhhccCCeEEEEecCcc-chHHHHHHHHHHHHhC---CCCEEEEEECCCccCCcccccc
Confidence 34678899999864321111112235899999988653 4455666666665443 44555 889998741 11
Q ss_pred ccC-CHHHHHHHHHHcCCeEEE
Q 030225 113 RKV-KNEEGELYAQENGLSFLE 133 (181)
Q Consensus 113 ~~~-~~~~~~~~~~~~~~~~~~ 133 (181)
... .......+.+.++.+++.
T Consensus 203 ~~~~~~~~~~~~~~~~g~~~~~ 224 (262)
T 2ph1_A 203 SYIFGEGKGESLAKKYNIGFFT 224 (262)
T ss_dssp ECTTCCCCHHHHHHHTTCSEEE
T ss_pred cccccccHHHHHHHHcCCCeEE
Confidence 111 112234555667877654
No 360
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=92.40 E-value=0.052 Score=40.55 Aligned_cols=15 Identities=33% Similarity=0.634 Sum_probs=13.3
Q ss_pred CCCchhHHHHHHhhC
Q 030225 1 MGTGKTSLVLRFVKG 15 (181)
Q Consensus 1 ~~~GKttLl~~l~~~ 15 (181)
+|||||||++.+.+.
T Consensus 184 sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 184 TGSGKTTLMKALMQE 198 (361)
T ss_dssp SSSCHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHhc
Confidence 599999999999864
No 361
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=92.39 E-value=0.046 Score=40.80 Aligned_cols=15 Identities=27% Similarity=0.350 Sum_probs=13.2
Q ss_pred CCCchhHHHHHHhhC
Q 030225 1 MGTGKTSLVLRFVKG 15 (181)
Q Consensus 1 ~~~GKttLl~~l~~~ 15 (181)
+|||||||++.|.+.
T Consensus 179 nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 179 ESSGKSVLVNKLAAV 193 (365)
T ss_dssp TTSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 699999999998864
No 362
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=92.37 E-value=0.056 Score=35.78 Aligned_cols=14 Identities=29% Similarity=0.570 Sum_probs=12.4
Q ss_pred CCCchhHHHHHHhh
Q 030225 1 MGTGKTSLVLRFVK 14 (181)
Q Consensus 1 ~~~GKttLl~~l~~ 14 (181)
+||||||+++.|..
T Consensus 14 ~GsGKST~~~~L~~ 27 (179)
T 2pez_A 14 SGAGKTTVSMALEE 27 (179)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 69999999998875
No 363
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=92.34 E-value=0.053 Score=35.36 Aligned_cols=14 Identities=21% Similarity=0.347 Sum_probs=12.4
Q ss_pred CCCchhHHHHHHhh
Q 030225 1 MGTGKTSLVLRFVK 14 (181)
Q Consensus 1 ~~~GKttLl~~l~~ 14 (181)
|||||||+.+.|..
T Consensus 9 ~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 9 MCSGKSTVGSLLSR 22 (168)
T ss_dssp TTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 79999999998865
No 364
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=92.34 E-value=0.052 Score=37.09 Aligned_cols=14 Identities=21% Similarity=0.418 Sum_probs=12.3
Q ss_pred CCCchhHHHHHHhh
Q 030225 1 MGTGKTSLVLRFVK 14 (181)
Q Consensus 1 ~~~GKttLl~~l~~ 14 (181)
|||||||+.+.|..
T Consensus 9 ~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 9 PGAGKGTQAEQIIE 22 (216)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 79999999999854
No 365
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=92.29 E-value=0.054 Score=35.47 Aligned_cols=14 Identities=21% Similarity=0.361 Sum_probs=12.3
Q ss_pred CCCchhHHHHHHhh
Q 030225 1 MGTGKTSLVLRFVK 14 (181)
Q Consensus 1 ~~~GKttLl~~l~~ 14 (181)
|||||||+.+.|..
T Consensus 11 ~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 11 RGCGMTTVGRELAR 24 (173)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 79999999998864
No 366
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=92.28 E-value=0.038 Score=36.58 Aligned_cols=14 Identities=29% Similarity=0.434 Sum_probs=8.5
Q ss_pred CCCchhHHHHHHhh
Q 030225 1 MGTGKTSLVLRFVK 14 (181)
Q Consensus 1 ~~~GKttLl~~l~~ 14 (181)
|||||||+.+.|..
T Consensus 14 ~GsGKST~a~~La~ 27 (183)
T 2vli_A 14 FGVGKTHTAHTLHE 27 (183)
T ss_dssp C----CHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 79999999999864
No 367
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=92.27 E-value=0.055 Score=39.86 Aligned_cols=15 Identities=33% Similarity=0.377 Sum_probs=13.4
Q ss_pred CCCchhHHHHHHhhC
Q 030225 1 MGTGKTSLVLRFVKG 15 (181)
Q Consensus 1 ~~~GKttLl~~l~~~ 15 (181)
||+|||||++.+.+.
T Consensus 60 ~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 60 PGLGKTTLAHIIASE 74 (334)
T ss_dssp TTSSHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHH
Confidence 799999999998864
No 368
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=92.27 E-value=0.058 Score=35.58 Aligned_cols=15 Identities=33% Similarity=0.503 Sum_probs=12.9
Q ss_pred CCCchhHHHHHHhhC
Q 030225 1 MGTGKTSLVLRFVKG 15 (181)
Q Consensus 1 ~~~GKttLl~~l~~~ 15 (181)
||+|||+|++.+...
T Consensus 52 ~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 52 PGVGKTAIVEGLAQR 66 (195)
T ss_dssp TTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 799999999988753
No 369
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=92.26 E-value=0.056 Score=39.73 Aligned_cols=14 Identities=14% Similarity=0.200 Sum_probs=12.2
Q ss_pred CCCchhHHHHHHhh
Q 030225 1 MGTGKTSLVLRFVK 14 (181)
Q Consensus 1 ~~~GKttLl~~l~~ 14 (181)
+|||||||++.|.+
T Consensus 101 sGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 101 VAVGKSTTSRVLKA 114 (321)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 69999999988864
No 370
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=92.25 E-value=0.054 Score=36.53 Aligned_cols=15 Identities=20% Similarity=0.377 Sum_probs=13.1
Q ss_pred CCCchhHHHHHHhhC
Q 030225 1 MGTGKTSLVLRFVKG 15 (181)
Q Consensus 1 ~~~GKttLl~~l~~~ 15 (181)
|||||||+.+.|...
T Consensus 13 ~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 13 DKSGKTTQCMNIMES 27 (204)
T ss_dssp TTSSHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHH
Confidence 799999999998764
No 371
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=92.17 E-value=0.056 Score=36.75 Aligned_cols=14 Identities=21% Similarity=0.332 Sum_probs=12.5
Q ss_pred CCCchhHHHHHHhh
Q 030225 1 MGTGKTSLVLRFVK 14 (181)
Q Consensus 1 ~~~GKttLl~~l~~ 14 (181)
|||||||+.+.|..
T Consensus 18 ~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 18 DRAGKSTQSRKLVE 31 (215)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 79999999998874
No 372
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=92.17 E-value=0.061 Score=35.98 Aligned_cols=14 Identities=29% Similarity=0.479 Sum_probs=12.3
Q ss_pred CCCchhHHHHHHhh
Q 030225 1 MGTGKTSLVLRFVK 14 (181)
Q Consensus 1 ~~~GKttLl~~l~~ 14 (181)
|||||||+.+.|..
T Consensus 18 ~GsGKsT~~~~La~ 31 (196)
T 2c95_A 18 PGSGKGTQCEKIVQ 31 (196)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 79999999998864
No 373
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=92.17 E-value=0.058 Score=38.87 Aligned_cols=15 Identities=27% Similarity=0.368 Sum_probs=13.2
Q ss_pred CCCchhHHHHHHhhC
Q 030225 1 MGTGKTSLVLRFVKG 15 (181)
Q Consensus 1 ~~~GKttLl~~l~~~ 15 (181)
||+|||||+..+.+.
T Consensus 44 ~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 44 SGMGKSTFVRQQALQ 58 (296)
T ss_dssp TTSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 799999999988764
No 374
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=92.16 E-value=0.055 Score=38.35 Aligned_cols=27 Identities=19% Similarity=0.326 Sum_probs=17.9
Q ss_pred eEEEEecCCCCCHHHHHHHHHHHHHhh
Q 030225 130 SFLETSAKSAHNVNELFYEIAKRLAEV 156 (181)
Q Consensus 130 ~~~~~Sa~~~~gi~~~~~~l~~~~~~~ 156 (181)
+.+.+.+.....++++.+.|.+.+...
T Consensus 148 ~~~~Id~~~~~~~~ei~~~I~~~l~~~ 174 (260)
T 3a4m_A 148 PFLIIDTTKDIDFNEIAKKLIEKSKEI 174 (260)
T ss_dssp CSEEEETTSCCCHHHHHHHHHHHHTSC
T ss_pred CEEEEeCCCCCCHHHHHHHHHhcccCC
Confidence 345565544456899999888876543
No 375
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=92.13 E-value=0.058 Score=40.74 Aligned_cols=15 Identities=33% Similarity=0.678 Sum_probs=13.1
Q ss_pred CCCchhHHHHHHhhC
Q 030225 1 MGTGKTSLVLRFVKG 15 (181)
Q Consensus 1 ~~~GKttLl~~l~~~ 15 (181)
+|||||||++.+.+-
T Consensus 56 sGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 56 TGSGKSTLLSAFLRL 70 (390)
T ss_dssp TTSSHHHHHHHHHTC
T ss_pred CCChHHHHHHHHhCC
Confidence 699999999998863
No 376
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=92.12 E-value=0.057 Score=37.30 Aligned_cols=26 Identities=15% Similarity=0.144 Sum_probs=19.5
Q ss_pred EEEEecCCCCCHHHHHHHHHHHHHhhCCC
Q 030225 131 FLETSAKSAHNVNELFYEIAKRLAEVNPS 159 (181)
Q Consensus 131 ~~~~Sa~~~~gi~~~~~~l~~~~~~~~~~ 159 (181)
++.+.+. .++++++.|.+.+...-+.
T Consensus 193 ~~~id~~---~~~~v~~~i~~~l~~~~~~ 218 (227)
T 1zd8_A 193 LETFSGT---ETNKIWPYVYAFLQTKVPQ 218 (227)
T ss_dssp EEEEECS---SHHHHHHHHHHHHTTTSCC
T ss_pred EEEEeCC---CHHHHHHHHHHHHHhhcCC
Confidence 6677764 7999999999988665443
No 377
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=92.11 E-value=0.057 Score=36.89 Aligned_cols=14 Identities=36% Similarity=0.420 Sum_probs=12.4
Q ss_pred CCCchhHHHHHHhh
Q 030225 1 MGTGKTSLVLRFVK 14 (181)
Q Consensus 1 ~~~GKttLl~~l~~ 14 (181)
|||||||+.+.|..
T Consensus 9 ~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 9 PGAGKGTQGERIVE 22 (216)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 79999999999864
No 378
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=92.06 E-value=0.063 Score=35.98 Aligned_cols=14 Identities=29% Similarity=0.496 Sum_probs=12.4
Q ss_pred CCCchhHHHHHHhh
Q 030225 1 MGTGKTSLVLRFVK 14 (181)
Q Consensus 1 ~~~GKttLl~~l~~ 14 (181)
|||||||+.+.|..
T Consensus 21 ~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 21 PGSGKGTQCEKLVE 34 (199)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 79999999988865
No 379
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=92.03 E-value=0.06 Score=36.37 Aligned_cols=14 Identities=21% Similarity=0.508 Sum_probs=12.4
Q ss_pred CCCchhHHHHHHhh
Q 030225 1 MGTGKTSLVLRFVK 14 (181)
Q Consensus 1 ~~~GKttLl~~l~~ 14 (181)
|||||||+.+.|..
T Consensus 29 ~GsGKST~a~~La~ 42 (201)
T 2cdn_A 29 PGAGKGTQAVKLAE 42 (201)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 79999999998864
No 380
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=91.99 E-value=0.063 Score=39.12 Aligned_cols=84 Identities=11% Similarity=0.011 Sum_probs=45.6
Q ss_pred EEEEEeCCChhhhh------------ccchhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCC
Q 030225 42 KFDIWDTAGQERYH------------SLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDL 109 (181)
Q Consensus 42 ~~~i~D~~G~~~~~------------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~ 109 (181)
.+.+.|++|..... .+.+......+.++++.|+...... ...+..+.... + ..++++||.|.
T Consensus 186 d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~~---~~~~~~~~~~~--~-~t~iivTh~d~ 259 (304)
T 1rj9_A 186 DLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNG---LEQAKKFHEAV--G-LTGVIVTKLDG 259 (304)
T ss_dssp SEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHH---HHHHHHHHHHH--C-CSEEEEECTTS
T ss_pred CEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHHH---HHHHHHHHHHc--C-CcEEEEECCcc
Confidence 35688999853211 1112334567888889998754332 22233332221 1 35677899885
Q ss_pred cccccCCHHHHHHHHHHcCCeEEEEe
Q 030225 110 EEKRKVKNEEGELYAQENGLSFLETS 135 (181)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~S 135 (181)
.. .. -.+.......+.|+.++.
T Consensus 260 ~a-~g---g~~l~i~~~~~~pi~~ig 281 (304)
T 1rj9_A 260 TA-KG---GVLIPIVRTLKVPIKFVG 281 (304)
T ss_dssp SC-CC---TTHHHHHHHHCCCEEEEE
T ss_pred cc-cc---cHHHHHHHHHCCCeEEEe
Confidence 32 11 123445556788877664
No 381
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=91.96 E-value=0.065 Score=36.50 Aligned_cols=14 Identities=36% Similarity=0.420 Sum_probs=13.1
Q ss_pred CCCchhHHHHHHhh
Q 030225 1 MGTGKTSLVLRFVK 14 (181)
Q Consensus 1 ~~~GKttLl~~l~~ 14 (181)
||+|||||+..+..
T Consensus 29 ~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 29 YASGKTTLALQTGL 42 (220)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 79999999999987
No 382
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=91.94 E-value=0.063 Score=42.05 Aligned_cols=16 Identities=19% Similarity=0.131 Sum_probs=13.7
Q ss_pred CCCchhHHHHHHhhCC
Q 030225 1 MGTGKTSLVLRFVKGQ 16 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~ 16 (181)
+|||||||++.+++.-
T Consensus 269 tGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 269 TASGKTTTLNAIMMFI 284 (511)
T ss_dssp TTSSHHHHHHHHGGGS
T ss_pred CCCCHHHHHHHHHhhC
Confidence 6999999999998644
No 383
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=91.94 E-value=0.062 Score=35.83 Aligned_cols=15 Identities=40% Similarity=0.434 Sum_probs=13.1
Q ss_pred CCCchhHHHHHHhhC
Q 030225 1 MGTGKTSLVLRFVKG 15 (181)
Q Consensus 1 ~~~GKttLl~~l~~~ 15 (181)
|||||||+.+.|...
T Consensus 19 ~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 19 PGTGKTSMAEMIAAE 33 (184)
T ss_dssp TTSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHh
Confidence 799999999988764
No 384
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=91.92 E-value=0.063 Score=40.27 Aligned_cols=14 Identities=21% Similarity=0.617 Sum_probs=12.7
Q ss_pred CCCchhHHHHHHhh
Q 030225 1 MGTGKTSLVLRFVK 14 (181)
Q Consensus 1 ~~~GKttLl~~l~~ 14 (181)
+|||||||++.+.+
T Consensus 145 ~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 145 TGSGKSTTIASMID 158 (372)
T ss_dssp SSSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHh
Confidence 69999999999886
No 385
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=91.92 E-value=0.047 Score=37.90 Aligned_cols=15 Identities=40% Similarity=0.625 Sum_probs=13.0
Q ss_pred CCCchhHHHHHHhhC
Q 030225 1 MGTGKTSLVLRFVKG 15 (181)
Q Consensus 1 ~~~GKttLl~~l~~~ 15 (181)
+|||||||++.|.+.
T Consensus 29 ~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 29 IGSGKTTYLNHFEKY 43 (230)
T ss_dssp TTSCHHHHHHTTGGG
T ss_pred CCCCHHHHHHHHHhc
Confidence 589999999988765
No 386
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=91.91 E-value=0.068 Score=35.57 Aligned_cols=14 Identities=29% Similarity=0.489 Sum_probs=12.4
Q ss_pred CCCchhHHHHHHhh
Q 030225 1 MGTGKTSLVLRFVK 14 (181)
Q Consensus 1 ~~~GKttLl~~l~~ 14 (181)
|||||||+.+.|..
T Consensus 15 ~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 15 PGSGKGTQCANIVR 28 (194)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 79999999998864
No 387
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=91.91 E-value=0.037 Score=41.26 Aligned_cols=16 Identities=25% Similarity=0.316 Sum_probs=13.6
Q ss_pred CCCchhHHHHHHhhCC
Q 030225 1 MGTGKTSLVLRFVKGQ 16 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~ 16 (181)
+|||||||++.+.+-.
T Consensus 40 nGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 40 SGAGKTTFMRIIAGLD 55 (353)
T ss_dssp CHHHHHHHHHHHHTSS
T ss_pred CCCcHHHHHHHHhCCC
Confidence 6899999999988653
No 388
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=91.89 E-value=0.56 Score=33.03 Aligned_cols=64 Identities=9% Similarity=0.026 Sum_probs=45.5
Q ss_pred EEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCC
Q 030225 41 IKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVD 108 (181)
Q Consensus 41 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D 108 (181)
+.+.|+|+|+... ......+..+|.+|++...+ ..+...+...++.+.... .+.++.+|+|+.+
T Consensus 145 yD~viiD~pp~~~--~~~~~~l~~aD~vivv~~~~-~~s~~~~~~~~~~l~~~~-~~~~~~vv~N~~~ 208 (267)
T 3k9g_A 145 YDYIVIDTNPSLD--VTLKNALLCSDYVIIPMTAE-KWAVESLDLFNFFVRKLN-LFLPIFLIITRFK 208 (267)
T ss_dssp CSEEEEEECSSCS--HHHHHHHTTCSEEEEEEESC-TTHHHHHHHHHHHHHTTT-CCCCEEEEEEEEC
T ss_pred CCEEEEECcCCcc--HHHHHHHHHCCeEEEEeCCC-hHHHHHHHHHHHHHHHHh-ccCCEEEEEeccc
Confidence 5688999998542 23345667799999999974 566676777767665553 4567788999984
No 389
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=91.88 E-value=0.066 Score=38.73 Aligned_cols=14 Identities=21% Similarity=0.437 Sum_probs=12.0
Q ss_pred CCCchhHHHHHHhh
Q 030225 1 MGTGKTSLVLRFVK 14 (181)
Q Consensus 1 ~~~GKttLl~~l~~ 14 (181)
+|||||||++.|..
T Consensus 40 sGsGKSTla~~L~~ 53 (290)
T 1odf_A 40 QGSGKSFTSIQIYN 53 (290)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 69999999988764
No 390
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=91.80 E-value=0.071 Score=35.30 Aligned_cols=14 Identities=21% Similarity=0.299 Sum_probs=12.1
Q ss_pred CCCchhHHHHHHhh
Q 030225 1 MGTGKTSLVLRFVK 14 (181)
Q Consensus 1 ~~~GKttLl~~l~~ 14 (181)
+|+|||||++++..
T Consensus 35 NGsGKStll~ai~~ 48 (182)
T 3kta_A 35 NGSGKSNIGDAILF 48 (182)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 58999999999864
No 391
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=91.75 E-value=0.072 Score=36.42 Aligned_cols=14 Identities=14% Similarity=0.064 Sum_probs=12.4
Q ss_pred CCCchhHHHHHHhh
Q 030225 1 MGTGKTSLVLRFVK 14 (181)
Q Consensus 1 ~~~GKttLl~~l~~ 14 (181)
|||||||+.+.|..
T Consensus 9 ~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 9 PVAGKGTQAQFIME 22 (214)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 79999999998864
No 392
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=91.74 E-value=0.046 Score=39.87 Aligned_cols=15 Identities=20% Similarity=0.410 Sum_probs=12.6
Q ss_pred CCCchhHHHHHHhhC
Q 030225 1 MGTGKTSLVLRFVKG 15 (181)
Q Consensus 1 ~~~GKttLl~~l~~~ 15 (181)
+|||||||++.+.+-
T Consensus 89 sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 89 SGAGKSTILRLLFRF 103 (306)
T ss_dssp SCHHHHHHHHHHTTS
T ss_pred CCchHHHHHHHHHcC
Confidence 699999999888753
No 393
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=91.73 E-value=0.068 Score=35.47 Aligned_cols=14 Identities=36% Similarity=0.615 Sum_probs=12.3
Q ss_pred CCCchhHHHHHHhh
Q 030225 1 MGTGKTSLVLRFVK 14 (181)
Q Consensus 1 ~~~GKttLl~~l~~ 14 (181)
|||||||+.+.|..
T Consensus 11 ~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 11 PGSGKSTIGRRLAK 24 (184)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 79999999988864
No 394
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=91.72 E-value=0.24 Score=38.15 Aligned_cols=16 Identities=19% Similarity=0.212 Sum_probs=13.1
Q ss_pred CCeEEEEEEEeCCChh
Q 030225 37 NEVTIKFDIWDTAGQE 52 (181)
Q Consensus 37 ~~~~~~~~i~D~~G~~ 52 (181)
++....+.++||.|..
T Consensus 136 ~g~~~~vlllDTEG~~ 151 (457)
T 4ido_A 136 DGKKVAVLLMDTQGTF 151 (457)
T ss_dssp TSCEEEEEEEEECCBT
T ss_pred CCCeeEEEEEeccCCC
Confidence 5667889999999954
No 395
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=91.71 E-value=0.072 Score=36.54 Aligned_cols=14 Identities=21% Similarity=0.316 Sum_probs=12.3
Q ss_pred CCCchhHHHHHHhh
Q 030225 1 MGTGKTSLVLRFVK 14 (181)
Q Consensus 1 ~~~GKttLl~~l~~ 14 (181)
|||||||+.+.|..
T Consensus 13 ~GsGKsT~a~~La~ 26 (220)
T 1aky_A 13 PGAGKGTQAPNLQE 26 (220)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 79999999998864
No 396
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=91.68 E-value=0.072 Score=37.62 Aligned_cols=14 Identities=21% Similarity=0.513 Sum_probs=12.4
Q ss_pred CCCchhHHHHHHhh
Q 030225 1 MGTGKTSLVLRFVK 14 (181)
Q Consensus 1 ~~~GKttLl~~l~~ 14 (181)
||||||||.+.|..
T Consensus 10 ~GSGKSTla~~La~ 23 (253)
T 2ze6_A 10 TCSGKTDMAIQIAQ 23 (253)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHh
Confidence 79999999999864
No 397
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=91.66 E-value=0.052 Score=38.27 Aligned_cols=14 Identities=36% Similarity=0.340 Sum_probs=12.5
Q ss_pred CCCchhHHHHHHhh
Q 030225 1 MGTGKTSLVLRFVK 14 (181)
Q Consensus 1 ~~~GKttLl~~l~~ 14 (181)
|||||||+.+.|..
T Consensus 41 ~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 41 SGAGKTTIHRIKQK 54 (253)
T ss_dssp GGGTTHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 79999999999865
No 398
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=91.66 E-value=0.072 Score=38.03 Aligned_cols=16 Identities=31% Similarity=0.328 Sum_probs=13.7
Q ss_pred CCCchhHHHHHHhhCC
Q 030225 1 MGTGKTSLVLRFVKGQ 16 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~ 16 (181)
||+|||||++.+.+..
T Consensus 82 ~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 82 PGVGKTHLARAVAGEA 97 (278)
T ss_dssp TTSSHHHHHHHHHHHT
T ss_pred CcChHHHHHHHHHHHc
Confidence 7999999999988643
No 399
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=91.60 E-value=0.075 Score=36.82 Aligned_cols=15 Identities=27% Similarity=0.348 Sum_probs=13.5
Q ss_pred CCCchhHHHHHHhhC
Q 030225 1 MGTGKTSLVLRFVKG 15 (181)
Q Consensus 1 ~~~GKttLl~~l~~~ 15 (181)
||+|||||+..+...
T Consensus 33 ~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 33 FRTGKTQICHTLAVT 47 (243)
T ss_dssp TTSSHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHH
Confidence 799999999999874
No 400
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=91.59 E-value=0.074 Score=38.70 Aligned_cols=14 Identities=29% Similarity=0.425 Sum_probs=12.4
Q ss_pred CCCchhHHHHHHhh
Q 030225 1 MGTGKTSLVLRFVK 14 (181)
Q Consensus 1 ~~~GKttLl~~l~~ 14 (181)
+|||||||++.|.+
T Consensus 109 nGsGKTTll~~Lag 122 (302)
T 3b9q_A 109 NGGGKTTSLGKLAH 122 (302)
T ss_dssp TTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 59999999999875
No 401
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=91.58 E-value=0.073 Score=34.78 Aligned_cols=14 Identities=43% Similarity=0.605 Sum_probs=12.2
Q ss_pred CCCchhHHHHHHhh
Q 030225 1 MGTGKTSLVLRFVK 14 (181)
Q Consensus 1 ~~~GKttLl~~l~~ 14 (181)
|||||||+.+.|..
T Consensus 16 ~GsGKSTva~~La~ 29 (168)
T 1zuh_A 16 MGSGKSSLAQELGL 29 (168)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 79999999998864
No 402
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=91.58 E-value=0.076 Score=36.92 Aligned_cols=25 Identities=8% Similarity=0.193 Sum_probs=17.9
Q ss_pred eEEEEecCCCCCHHHHHHHHHHHHHhh
Q 030225 130 SFLETSAKSAHNVNELFYEIAKRLAEV 156 (181)
Q Consensus 130 ~~~~~Sa~~~~gi~~~~~~l~~~~~~~ 156 (181)
.++.+.+ ...++++++.+.+.+.+.
T Consensus 201 ~~~vIDa--~~s~eev~~~I~~~l~~~ 225 (229)
T 4eaq_A 201 RFKSVNA--DQPLENVVEDTYQTIIKY 225 (229)
T ss_dssp TEEEEET--TSCHHHHHHHHHHHHHHH
T ss_pred CEEEEeC--CCCHHHHHHHHHHHHHHH
Confidence 3666665 357899999988877654
No 403
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=91.57 E-value=0.077 Score=35.81 Aligned_cols=14 Identities=36% Similarity=0.522 Sum_probs=12.4
Q ss_pred CCCchhHHHHHHhh
Q 030225 1 MGTGKTSLVLRFVK 14 (181)
Q Consensus 1 ~~~GKttLl~~l~~ 14 (181)
|||||||+.+.|..
T Consensus 24 ~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 24 PGAGKGTQCEKLVK 37 (203)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 79999999998874
No 404
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=91.51 E-value=0.7 Score=32.40 Aligned_cols=67 Identities=15% Similarity=0.091 Sum_probs=42.5
Q ss_pred EEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHHHHHHHHHHHH---HHhCCCCceEE-EEEeCCCC
Q 030225 40 TIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQEL---QRQGNPNLIMF-LVANKVDL 109 (181)
Q Consensus 40 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~---~~~~~~~~p~i-vi~nK~D~ 109 (181)
.+.+.|+|+|+..... ....+..+|.+|++...+. .++..+...++.+ .....++.+++ +|.|+.|.
T Consensus 111 ~yD~iiiD~pp~~~~~--~~~~l~~aD~viiv~~~~~-~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~N~~~~ 181 (257)
T 1wcv_1 111 GYDLVLLDAPPSLSPL--TLNALAAAEGVVVPVQAEY-YALEGVAGLLATLEEVRAGLNPRLRLLGILVTMYDG 181 (257)
T ss_dssp TCSEEEEECCSSCCHH--HHHHHHHCSEEEEEEESST-HHHHHHHHHHHHHHHHHHHTCTTCEEEEEEEESBCT
T ss_pred CCCEEEEeCCCCCCHH--HHHHHHHCCeEEEEecCch-HHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeECC
Confidence 3568899999864322 2344567999999999753 4555444444444 33223566664 88999875
No 405
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=91.51 E-value=0.074 Score=40.56 Aligned_cols=15 Identities=20% Similarity=0.390 Sum_probs=13.3
Q ss_pred CCCchhHHHHHHhhC
Q 030225 1 MGTGKTSLVLRFVKG 15 (181)
Q Consensus 1 ~~~GKttLl~~l~~~ 15 (181)
+|||||||++.+++.
T Consensus 176 nGSGKTTlL~allg~ 190 (418)
T 1p9r_A 176 TGSGKSTTLYAGLQE 190 (418)
T ss_dssp TTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHhh
Confidence 599999999999864
No 406
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=91.49 E-value=0.079 Score=36.41 Aligned_cols=25 Identities=16% Similarity=0.351 Sum_probs=18.2
Q ss_pred eEEEEecCCCCCHHHHHHHHHHHHHhh
Q 030225 130 SFLETSAKSAHNVNELFYEIAKRLAEV 156 (181)
Q Consensus 130 ~~~~~Sa~~~~gi~~~~~~l~~~~~~~ 156 (181)
.++.+.+ ...++++++.|.+.+...
T Consensus 187 ~~~~Id~--~~~~~ev~~~I~~~l~~~ 211 (222)
T 1zak_A 187 IIVKVQG--DATVDAVFAKIDELLGSI 211 (222)
T ss_dssp CEEEEEC--SSCHHHHHHHHHHHHHHH
T ss_pred cEEEEEC--CCCHHHHHHHHHHHHHhh
Confidence 4667776 356899999988877553
No 407
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=91.48 E-value=0.079 Score=36.55 Aligned_cols=14 Identities=21% Similarity=0.119 Sum_probs=12.3
Q ss_pred CCCchhHHHHHHhh
Q 030225 1 MGTGKTSLVLRFVK 14 (181)
Q Consensus 1 ~~~GKttLl~~l~~ 14 (181)
|||||||+.+.|..
T Consensus 9 ~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 9 NGSGKGTQGNLVKD 22 (223)
T ss_dssp TTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 79999999998864
No 408
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=91.38 E-value=0.083 Score=36.04 Aligned_cols=16 Identities=19% Similarity=0.173 Sum_probs=13.1
Q ss_pred CHHHHHHHHHHHHHhh
Q 030225 141 NVNELFYEIAKRLAEV 156 (181)
Q Consensus 141 gi~~~~~~l~~~~~~~ 156 (181)
.++++.+.|...+...
T Consensus 188 s~eev~~~I~~~l~~~ 203 (211)
T 1m7g_A 188 PVQDAVKQIIDYLDTK 203 (211)
T ss_dssp CHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHc
Confidence 6999999998887653
No 409
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=91.16 E-value=0.083 Score=36.14 Aligned_cols=14 Identities=29% Similarity=0.698 Sum_probs=12.5
Q ss_pred CCCchhHHHHHHhh
Q 030225 1 MGTGKTSLVLRFVK 14 (181)
Q Consensus 1 ~~~GKttLl~~l~~ 14 (181)
+||||||+.+.|..
T Consensus 13 ~GSGKST~~~~L~~ 26 (218)
T 1vht_A 13 IGSGKSTVANAFAD 26 (218)
T ss_dssp TTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 69999999999875
No 410
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=91.06 E-value=0.091 Score=36.81 Aligned_cols=14 Identities=36% Similarity=0.503 Sum_probs=12.5
Q ss_pred CCCchhHHHHHHhh
Q 030225 1 MGTGKTSLVLRFVK 14 (181)
Q Consensus 1 ~~~GKttLl~~l~~ 14 (181)
|||||||+.++|..
T Consensus 38 ~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 38 PGSGKGTQSLNLKK 51 (243)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 79999999999864
No 411
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=91.01 E-value=0.42 Score=34.91 Aligned_cols=15 Identities=33% Similarity=0.317 Sum_probs=13.0
Q ss_pred CCCchhHHHHHHhhC
Q 030225 1 MGTGKTSLVLRFVKG 15 (181)
Q Consensus 1 ~~~GKttLl~~l~~~ 15 (181)
||+|||+|++.+...
T Consensus 64 ~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 64 AGLGKTTLANIISYE 78 (338)
T ss_dssp TTSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 799999999998654
No 412
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=90.90 E-value=0.071 Score=37.12 Aligned_cols=16 Identities=31% Similarity=0.536 Sum_probs=13.5
Q ss_pred CCCchhHHHHHHhhCC
Q 030225 1 MGTGKTSLVLRFVKGQ 16 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~ 16 (181)
+|||||||++.+.+-.
T Consensus 36 nGsGKSTll~~i~g~~ 51 (227)
T 1qhl_A 36 NGAGKSTTMAAFVTAL 51 (227)
T ss_dssp CSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHhccc
Confidence 5999999999987643
No 413
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=90.87 E-value=3 Score=29.16 Aligned_cols=87 Identities=16% Similarity=0.195 Sum_probs=51.7
Q ss_pred EEEEEEeCCChhhhhccc-hhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhCC-CCce-EEEEEeCCCCcccccCCH
Q 030225 41 IKFDIWDTAGQERYHSLA-PMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGN-PNLI-MFLVANKVDLEEKRKVKN 117 (181)
Q Consensus 41 ~~~~i~D~~G~~~~~~~~-~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p-~ivi~nK~D~~~~~~~~~ 117 (181)
+.+.|+|+||......+. ......+|.+|++... +..++..+...++.+..... .+.+ ..+|.|+.+.. ...
T Consensus 116 yD~iiiD~~~~~~~~~~~~~~~~~~aD~viiv~~~-~~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~~----~~~ 190 (269)
T 1cp2_A 116 LDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASG-EMMALYAANNISKGIQKYAKSGGVRLGGIICNSRKVA----NEY 190 (269)
T ss_dssp CSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECS-SHHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSSS----CCH
T ss_pred CCEEEEeCCchhhhhhhhhhhhHhhCCEEEEeecC-chhhHHHHHHHHHHHHHHHhcCCCcEEEEEeecCCcc----hhH
Confidence 568899999853222111 1122468999999886 45667777666666655322 2445 46778998632 123
Q ss_pred HHHHHHHHHcCCeEE
Q 030225 118 EEGELYAQENGLSFL 132 (181)
Q Consensus 118 ~~~~~~~~~~~~~~~ 132 (181)
+....+.+.++.+++
T Consensus 191 ~~~~~l~~~~~~~v~ 205 (269)
T 1cp2_A 191 ELLDAFAKELGSQLI 205 (269)
T ss_dssp HHHHHHHHHHTCCEE
T ss_pred HHHHHHHHHcCCccc
Confidence 444555566676654
No 414
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=90.87 E-value=0.1 Score=35.21 Aligned_cols=15 Identities=33% Similarity=0.527 Sum_probs=12.9
Q ss_pred CCCchhHHHHHHhhC
Q 030225 1 MGTGKTSLVLRFVKG 15 (181)
Q Consensus 1 ~~~GKttLl~~l~~~ 15 (181)
||+|||+|++.+...
T Consensus 63 ~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 63 FGVGKTYLLAAIANE 77 (202)
T ss_dssp TTSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 799999999988753
No 415
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=90.85 E-value=0.096 Score=37.72 Aligned_cols=14 Identities=29% Similarity=0.615 Sum_probs=12.8
Q ss_pred CCCchhHHHHHHhh
Q 030225 1 MGTGKTSLVLRFVK 14 (181)
Q Consensus 1 ~~~GKttLl~~l~~ 14 (181)
|||||||+.++|..
T Consensus 11 ~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 11 PGSGKSTWAREFIA 24 (301)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 79999999999875
No 416
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=90.84 E-value=0.076 Score=34.91 Aligned_cols=15 Identities=33% Similarity=0.421 Sum_probs=12.7
Q ss_pred CCCchhHHHHHHhhC
Q 030225 1 MGTGKTSLVLRFVKG 15 (181)
Q Consensus 1 ~~~GKttLl~~l~~~ 15 (181)
||+|||+|++.+...
T Consensus 52 ~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 52 PGVGKTAIVEGLAIK 66 (187)
T ss_dssp GGGCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 699999999988653
No 417
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=90.84 E-value=0.1 Score=35.81 Aligned_cols=14 Identities=29% Similarity=0.259 Sum_probs=12.3
Q ss_pred CCCchhHHHHHHhh
Q 030225 1 MGTGKTSLVLRFVK 14 (181)
Q Consensus 1 ~~~GKttLl~~l~~ 14 (181)
|||||||+.+.|..
T Consensus 14 ~GsGKsT~a~~La~ 27 (217)
T 3be4_A 14 PGSGKGTQCEFIKK 27 (217)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 79999999998864
No 418
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=90.82 E-value=0.092 Score=37.00 Aligned_cols=19 Identities=0% Similarity=0.057 Sum_probs=15.3
Q ss_pred CCCHHHHHHHHHHHHHhhC
Q 030225 139 AHNVNELFYEIAKRLAEVN 157 (181)
Q Consensus 139 ~~gi~~~~~~l~~~~~~~~ 157 (181)
+.+++++.+.|...+.+..
T Consensus 228 ~~~~eev~~~I~~~i~~~~ 246 (252)
T 4e22_A 228 SMSIEQVIEQALAYAQRIL 246 (252)
T ss_dssp SSCHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHHh
Confidence 4579999999998887764
No 419
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=90.82 E-value=0.1 Score=35.95 Aligned_cols=15 Identities=20% Similarity=0.324 Sum_probs=12.9
Q ss_pred CCCchhHHHHHHhhC
Q 030225 1 MGTGKTSLVLRFVKG 15 (181)
Q Consensus 1 ~~~GKttLl~~l~~~ 15 (181)
||+|||+|++.+...
T Consensus 61 ~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 61 VKSGRTHLIHAACAR 75 (242)
T ss_dssp TTSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 799999999988753
No 420
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=90.65 E-value=0.11 Score=34.94 Aligned_cols=15 Identities=20% Similarity=0.401 Sum_probs=13.3
Q ss_pred CCCchhHHHHHHhhC
Q 030225 1 MGTGKTSLVLRFVKG 15 (181)
Q Consensus 1 ~~~GKttLl~~l~~~ 15 (181)
+||||||+.+.|...
T Consensus 17 ~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 17 IGSGKSTVAALLRSW 31 (203)
T ss_dssp TTSCHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHC
Confidence 699999999998865
No 421
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=90.61 E-value=1.1 Score=32.42 Aligned_cols=15 Identities=33% Similarity=0.499 Sum_probs=13.0
Q ss_pred CCCchhHHHHHHhhC
Q 030225 1 MGTGKTSLVLRFVKG 15 (181)
Q Consensus 1 ~~~GKttLl~~l~~~ 15 (181)
||+|||++++.+...
T Consensus 57 ~G~GKT~la~~la~~ 71 (324)
T 3u61_B 57 PGTGKTTVAKALCHD 71 (324)
T ss_dssp TTSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 799999999998754
No 422
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=90.58 E-value=0.11 Score=36.57 Aligned_cols=15 Identities=40% Similarity=0.390 Sum_probs=13.1
Q ss_pred CCCchhHHHHHHhhC
Q 030225 1 MGTGKTSLVLRFVKG 15 (181)
Q Consensus 1 ~~~GKttLl~~l~~~ 15 (181)
||+|||||++.+.+.
T Consensus 54 ~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 54 PGTGKTLLAKAIAGE 68 (257)
T ss_dssp TTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 799999999998753
No 423
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=90.53 E-value=0.1 Score=40.28 Aligned_cols=15 Identities=40% Similarity=0.297 Sum_probs=13.1
Q ss_pred CCCchhHHHHHHhhC
Q 030225 1 MGTGKTSLVLRFVKG 15 (181)
Q Consensus 1 ~~~GKttLl~~l~~~ 15 (181)
+|||||||++.|.+-
T Consensus 147 nGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 147 SQTGKTSLSRTLCSY 161 (460)
T ss_dssp TTSSHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHhCc
Confidence 589999999998864
No 424
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=90.52 E-value=0.1 Score=40.61 Aligned_cols=90 Identities=16% Similarity=0.104 Sum_probs=46.7
Q ss_pred EEEEEEeCCChhhhhc--c--c-------hhh-ccCCcEEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCC
Q 030225 41 IKFDIWDTAGQERYHS--L--A-------PMY-YRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVD 108 (181)
Q Consensus 41 ~~~~i~D~~G~~~~~~--~--~-------~~~-~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D 108 (181)
+.+.++||+|...... + . ..+ ....+-+++|.|++-... .......+.... + ...+|+||.|
T Consensus 376 ~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~---al~~ak~f~~~~--~-itgvIlTKLD 449 (503)
T 2yhs_A 376 IDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQN---AVSQAKLFHEAV--G-LTGITLTKLD 449 (503)
T ss_dssp CSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHH---HHHHHHHHHHHT--C-CSEEEEECGG
T ss_pred CCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHH---HHHHHHHHHhhc--C-CCEEEEEcCC
Confidence 3577999999632111 0 0 011 123567888999775422 112223333221 2 3456789988
Q ss_pred CcccccCCHHHHHHHHHHcCCeEEEEecCCCCCH
Q 030225 109 LEEKRKVKNEEGELYAQENGLSFLETSAKSAHNV 142 (181)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 142 (181)
-.. ..-.+..++...++++.++. +|+++
T Consensus 450 ~ta----kgG~~lsi~~~~~~PI~fig--~Ge~v 477 (503)
T 2yhs_A 450 GTA----KGGVIFSVADQFGIPIRYIG--VGERI 477 (503)
T ss_dssp GCS----CCTHHHHHHHHHCCCEEEEE--CSSSG
T ss_pred Ccc----cccHHHHHHHHHCCCEEEEe--cCCCh
Confidence 421 12234566667788877753 44444
No 425
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=90.44 E-value=0.58 Score=34.89 Aligned_cols=13 Identities=38% Similarity=0.493 Sum_probs=11.7
Q ss_pred CCCchhHHHHHHh
Q 030225 1 MGTGKTSLVLRFV 13 (181)
Q Consensus 1 ~~~GKttLl~~l~ 13 (181)
.|||||||++.+.
T Consensus 32 NGaGKTTll~ai~ 44 (365)
T 3qf7_A 32 NGAGKSSLFEAIS 44 (365)
T ss_dssp TTSSHHHHHHHHH
T ss_pred CCCCHHHHHHHHH
Confidence 5899999999986
No 426
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=90.44 E-value=0.11 Score=38.61 Aligned_cols=16 Identities=31% Similarity=0.540 Sum_probs=14.1
Q ss_pred CCCchhHHHHHHhhCC
Q 030225 1 MGTGKTSLVLRFVKGQ 16 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~ 16 (181)
+|+|||||++.+.+..
T Consensus 80 nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 80 SGVGKSTLLGMICNGA 95 (347)
T ss_dssp TTSSHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHhcCC
Confidence 6999999999998764
No 427
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=90.33 E-value=0.12 Score=35.42 Aligned_cols=14 Identities=43% Similarity=0.553 Sum_probs=12.5
Q ss_pred CCCchhHHHHHHhh
Q 030225 1 MGTGKTSLVLRFVK 14 (181)
Q Consensus 1 ~~~GKttLl~~l~~ 14 (181)
||+|||||++.+..
T Consensus 54 ~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 54 RGVGKTSIARLLAK 67 (250)
T ss_dssp TTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 79999999998865
No 428
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=90.26 E-value=0.12 Score=35.84 Aligned_cols=24 Identities=13% Similarity=0.188 Sum_probs=17.5
Q ss_pred EEEEecCCCCCHHHHHHHHHHHHHhh
Q 030225 131 FLETSAKSAHNVNELFYEIAKRLAEV 156 (181)
Q Consensus 131 ~~~~Sa~~~~gi~~~~~~l~~~~~~~ 156 (181)
++.+.+. ..++++++.|.+.+...
T Consensus 208 ~~~id~~--~~~~~v~~~I~~~l~~~ 231 (233)
T 1ak2_A 208 HSAIDAS--QTPDVVFASILAAFSKA 231 (233)
T ss_dssp EEEEETT--SCHHHHHHHHHHHHHHH
T ss_pred EEEEECC--CCHHHHHHHHHHHHHhh
Confidence 5667664 56899999988877543
No 429
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=90.24 E-value=0.12 Score=38.65 Aligned_cols=14 Identities=29% Similarity=0.425 Sum_probs=12.4
Q ss_pred CCCchhHHHHHHhh
Q 030225 1 MGTGKTSLVLRFVK 14 (181)
Q Consensus 1 ~~~GKttLl~~l~~ 14 (181)
+|||||||++.|.+
T Consensus 166 nGsGKTTll~~Lag 179 (359)
T 2og2_A 166 NGGGKTTSLGKLAH 179 (359)
T ss_dssp TTSCHHHHHHHHHH
T ss_pred CCChHHHHHHHHHh
Confidence 59999999999875
No 430
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=90.19 E-value=0.12 Score=36.90 Aligned_cols=14 Identities=36% Similarity=0.593 Sum_probs=12.6
Q ss_pred CCCchhHHHHHHhh
Q 030225 1 MGTGKTSLVLRFVK 14 (181)
Q Consensus 1 ~~~GKttLl~~l~~ 14 (181)
||+|||||+..+..
T Consensus 39 ~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 39 GGAGKSMLALQLAA 52 (279)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 79999999999875
No 431
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=90.05 E-value=0.12 Score=38.80 Aligned_cols=14 Identities=29% Similarity=0.600 Sum_probs=12.8
Q ss_pred CCCchhHHHHHHhh
Q 030225 1 MGTGKTSLVLRFVK 14 (181)
Q Consensus 1 ~~~GKttLl~~l~~ 14 (181)
||+|||||++.+.+
T Consensus 178 ~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 178 IDSGKTTLAAALLE 191 (377)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHh
Confidence 79999999999885
No 432
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=89.68 E-value=0.15 Score=32.89 Aligned_cols=13 Identities=38% Similarity=0.601 Sum_probs=11.5
Q ss_pred CCCchhHHHHHHh
Q 030225 1 MGTGKTSLVLRFV 13 (181)
Q Consensus 1 ~~~GKttLl~~l~ 13 (181)
.|+|||||+.++.
T Consensus 32 NGsGKStil~Ai~ 44 (149)
T 1f2t_A 32 NGSGKSSLLDAIL 44 (149)
T ss_dssp TTSSHHHHHHHHH
T ss_pred CCCCHHHHHHHHH
Confidence 4899999999975
No 433
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=89.66 E-value=0.14 Score=36.13 Aligned_cols=20 Identities=15% Similarity=0.069 Sum_probs=14.7
Q ss_pred CCCCCHHHHHHHHHHHHHhh
Q 030225 137 KSAHNVNELFYEIAKRLAEV 156 (181)
Q Consensus 137 ~~~~gi~~~~~~l~~~~~~~ 156 (181)
.++..++++++.+.+.+...
T Consensus 218 Ts~~s~eev~~~I~~~i~~~ 237 (250)
T 3nwj_A 218 VSDLTPAEIAIEAFEQVQSY 237 (250)
T ss_dssp GGGCCHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHH
Confidence 34567888888888877664
No 434
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=89.66 E-value=1 Score=33.45 Aligned_cols=46 Identities=13% Similarity=0.069 Sum_probs=30.7
Q ss_pred EEEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHHHHHHHHHH
Q 030225 40 TIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQ 88 (181)
Q Consensus 40 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~ 88 (181)
.+.+.|+|+|... .......+..+|.+|++... +..++..+...++
T Consensus 153 ~yD~VIID~pP~l--~~~~~~aL~~aD~viip~~~-~~~s~~~~~~l~~ 198 (361)
T 3pg5_A 153 RYDVIFFDVGPSL--GPFNRTVLLGCDAFVTPTAT-DLFSFHAFGNLAR 198 (361)
T ss_dssp CCSEEEEECCSCC--SHHHHHHHTTCSEEEEEECC-SHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCc--CHHHHHHHHHCCEEEEEecC-ChHHHHHHHHHHH
Confidence 5778999999753 23345566779999999986 4555544443333
No 435
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=89.52 E-value=0.14 Score=39.29 Aligned_cols=16 Identities=25% Similarity=0.327 Sum_probs=13.9
Q ss_pred CCCchhHHHHHHhhCC
Q 030225 1 MGTGKTSLVLRFVKGQ 16 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~ 16 (181)
+|+|||||++.+.+..
T Consensus 166 sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 166 SGVGKSVLLGMMARYT 181 (438)
T ss_dssp TTSSHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHhccc
Confidence 6999999999998764
No 436
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=89.51 E-value=0.15 Score=34.35 Aligned_cols=14 Identities=29% Similarity=0.437 Sum_probs=12.3
Q ss_pred CCCchhHHHHHHhh
Q 030225 1 MGTGKTSLVLRFVK 14 (181)
Q Consensus 1 ~~~GKttLl~~l~~ 14 (181)
|||||||+.+.|..
T Consensus 11 ~GsGKst~~~~la~ 24 (208)
T 3ake_A 11 SASGKSSVARRVAA 24 (208)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 69999999998865
No 437
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=89.48 E-value=0.15 Score=37.25 Aligned_cols=15 Identities=40% Similarity=0.463 Sum_probs=13.0
Q ss_pred CCCchhHHHHHHhhC
Q 030225 1 MGTGKTSLVLRFVKG 15 (181)
Q Consensus 1 ~~~GKttLl~~l~~~ 15 (181)
||+|||||++.+.+.
T Consensus 46 ~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 46 VGTGKTHLLQAAGNE 60 (324)
T ss_dssp SSSSHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHH
Confidence 799999999988753
No 438
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=89.43 E-value=0.15 Score=36.34 Aligned_cols=15 Identities=40% Similarity=0.397 Sum_probs=13.2
Q ss_pred CCCchhHHHHHHhhC
Q 030225 1 MGTGKTSLVLRFVKG 15 (181)
Q Consensus 1 ~~~GKttLl~~l~~~ 15 (181)
||+|||+|++.+...
T Consensus 60 ~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 60 PGTGKTLLAKAVATE 74 (285)
T ss_dssp SSSSHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHH
Confidence 799999999998754
No 439
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=89.39 E-value=0.15 Score=35.30 Aligned_cols=14 Identities=43% Similarity=0.558 Sum_probs=11.9
Q ss_pred CCCchhHHHHHHhh
Q 030225 1 MGTGKTSLVLRFVK 14 (181)
Q Consensus 1 ~~~GKttLl~~l~~ 14 (181)
||+|||||+..+..
T Consensus 32 ~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 32 PGTGKTIFSQQFLW 45 (247)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 79999999887764
No 440
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=89.37 E-value=0.15 Score=39.68 Aligned_cols=14 Identities=36% Similarity=0.629 Sum_probs=12.4
Q ss_pred CCCchhHHHHHHhh
Q 030225 1 MGTGKTSLVLRFVK 14 (181)
Q Consensus 1 ~~~GKttLl~~l~~ 14 (181)
+|||||||++.+.+
T Consensus 38 nGsGKSTLl~~l~G 51 (483)
T 3euj_A 38 NGAGKSTTMAGFVT 51 (483)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCcHHHHHHHHhc
Confidence 58999999999875
No 441
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=89.33 E-value=0.15 Score=34.45 Aligned_cols=15 Identities=27% Similarity=0.468 Sum_probs=12.8
Q ss_pred CCCchhHHHHHHhhC
Q 030225 1 MGTGKTSLVLRFVKG 15 (181)
Q Consensus 1 ~~~GKttLl~~l~~~ 15 (181)
+||||||+.+.|...
T Consensus 21 ~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 21 IGTGKSTVCEILKNK 35 (192)
T ss_dssp TTSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHh
Confidence 699999999988754
No 442
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=89.26 E-value=0.16 Score=35.38 Aligned_cols=14 Identities=29% Similarity=0.527 Sum_probs=12.3
Q ss_pred CCCchhHHHHHHhh
Q 030225 1 MGTGKTSLVLRFVK 14 (181)
Q Consensus 1 ~~~GKttLl~~l~~ 14 (181)
+||||||+++.|..
T Consensus 11 ~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 11 IAVGKSTFVKLLTK 24 (241)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 69999999998875
No 443
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=89.16 E-value=0.15 Score=40.16 Aligned_cols=15 Identities=33% Similarity=0.388 Sum_probs=13.2
Q ss_pred CCCchhHHHHHHhhC
Q 030225 1 MGTGKTSLVLRFVKG 15 (181)
Q Consensus 1 ~~~GKttLl~~l~~~ 15 (181)
+|||||||++.+.+.
T Consensus 56 NGaGKSTLlk~l~Gl 70 (538)
T 1yqt_A 56 NGTGKSTAVKILAGQ 70 (538)
T ss_dssp TTSSHHHHHHHHHTS
T ss_pred CCCCHHHHHHHHhCC
Confidence 599999999998874
No 444
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=89.10 E-value=0.16 Score=36.41 Aligned_cols=15 Identities=33% Similarity=0.350 Sum_probs=13.2
Q ss_pred CCCchhHHHHHHhhC
Q 030225 1 MGTGKTSLVLRFVKG 15 (181)
Q Consensus 1 ~~~GKttLl~~l~~~ 15 (181)
||+|||+|++.+...
T Consensus 63 ~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 63 PGNGKTLLARAVATE 77 (297)
T ss_dssp SSSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 799999999998764
No 445
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=89.04 E-value=0.16 Score=37.66 Aligned_cols=16 Identities=31% Similarity=0.409 Sum_probs=13.8
Q ss_pred CCCchhHHHHHHhhCC
Q 030225 1 MGTGKTSLVLRFVKGQ 16 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~ 16 (181)
||+|||||+..+....
T Consensus 140 ~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 140 FGSGKTQLAHTLAVMV 155 (349)
T ss_dssp TTSSHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHh
Confidence 7999999999998653
No 446
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=88.96 E-value=0.16 Score=35.68 Aligned_cols=14 Identities=29% Similarity=0.574 Sum_probs=12.3
Q ss_pred CCCchhHHHHHHhh
Q 030225 1 MGTGKTSLVLRFVK 14 (181)
Q Consensus 1 ~~~GKttLl~~l~~ 14 (181)
|||||||+.+.|..
T Consensus 31 ~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 31 TASGKSSVCAKIVQ 44 (252)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 79999999998865
No 447
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=88.83 E-value=0.17 Score=37.44 Aligned_cols=15 Identities=40% Similarity=0.505 Sum_probs=13.1
Q ss_pred CCCchhHHHHHHhhC
Q 030225 1 MGTGKTSLVLRFVKG 15 (181)
Q Consensus 1 ~~~GKttLl~~l~~~ 15 (181)
||+|||||++.+...
T Consensus 54 ~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 54 TGTGKTAVVKFVLSK 68 (386)
T ss_dssp TTSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 799999999998763
No 448
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=88.82 E-value=0.17 Score=38.58 Aligned_cols=15 Identities=20% Similarity=0.487 Sum_probs=13.1
Q ss_pred CCCchhHHHHHHhhC
Q 030225 1 MGTGKTSLVLRFVKG 15 (181)
Q Consensus 1 ~~~GKttLl~~l~~~ 15 (181)
||||||||.++|...
T Consensus 267 pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 267 PGAGKSTFIQEHLVS 281 (416)
T ss_dssp TTSSHHHHHHHHTGG
T ss_pred CCCCHHHHHHHHHHh
Confidence 799999999998753
No 449
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=88.71 E-value=0.17 Score=36.32 Aligned_cols=14 Identities=36% Similarity=0.627 Sum_probs=12.3
Q ss_pred CCCchhHHHHHHhh
Q 030225 1 MGTGKTSLVLRFVK 14 (181)
Q Consensus 1 ~~~GKttLl~~l~~ 14 (181)
|||||||+.+.|..
T Consensus 84 ~GSGKSTva~~La~ 97 (281)
T 2f6r_A 84 SGSGKSSVAQRLKN 97 (281)
T ss_dssp TTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 79999999998863
No 450
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=88.68 E-value=0.18 Score=35.28 Aligned_cols=15 Identities=33% Similarity=0.330 Sum_probs=13.1
Q ss_pred CCCchhHHHHHHhhC
Q 030225 1 MGTGKTSLVLRFVKG 15 (181)
Q Consensus 1 ~~~GKttLl~~l~~~ 15 (181)
||+|||+|++.+...
T Consensus 48 ~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 48 PGCGKTLLAKAVATE 62 (262)
T ss_dssp TTSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 799999999998753
No 451
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=88.64 E-value=0.18 Score=35.55 Aligned_cols=15 Identities=40% Similarity=0.370 Sum_probs=13.1
Q ss_pred CCCchhHHHHHHhhC
Q 030225 1 MGTGKTSLVLRFVKG 15 (181)
Q Consensus 1 ~~~GKttLl~~l~~~ 15 (181)
||+|||+|++.+...
T Consensus 53 ~GtGKT~la~~la~~ 67 (268)
T 2r62_A 53 PGTGKTLLAKAVAGE 67 (268)
T ss_dssp SCSSHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHH
Confidence 799999999998763
No 452
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=88.60 E-value=0.19 Score=36.31 Aligned_cols=15 Identities=20% Similarity=0.200 Sum_probs=13.2
Q ss_pred CCCchhHHHHHHhhC
Q 030225 1 MGTGKTSLVLRFVKG 15 (181)
Q Consensus 1 ~~~GKttLl~~l~~~ 15 (181)
||+|||+|++.+...
T Consensus 45 pGtGKT~la~aiA~~ 59 (293)
T 3t15_A 45 KGQGKSFQCELVFRK 59 (293)
T ss_dssp TTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 899999999998754
No 453
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=88.53 E-value=0.63 Score=33.35 Aligned_cols=67 Identities=19% Similarity=0.157 Sum_probs=40.8
Q ss_pred EEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHHHHHHHHHHHH---HHhCCCCce-EEEEEeCCCCc
Q 030225 41 IKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQEL---QRQGNPNLI-MFLVANKVDLE 110 (181)
Q Consensus 41 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~---~~~~~~~~p-~ivi~nK~D~~ 110 (181)
+.+.|+|+|+...... ...+..+|.+|++...+ ..+...+...+..+ .....++.+ .-+|.|+.|..
T Consensus 155 yD~IiiD~pp~~~~~~--~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~n~~~~~ 225 (298)
T 2oze_A 155 YDLIIIDTVPTPSVYT--NNAIVASDYVMIPLQAE-EESTNNIQNYISYLIDLQEQFNPGLDMIGFVPYLVDTD 225 (298)
T ss_dssp CSEEEEEECSSCSHHH--HHHHHHCSEEEEEECGG-GCCHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEESCTT
T ss_pred CCEEEEECCCCccHHH--HHHHHHCCeEEEEecCc-HHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEEECCC
Confidence 5688999998643222 23344699999998864 34444444444443 332234566 44788999863
No 454
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=88.47 E-value=0.18 Score=35.19 Aligned_cols=14 Identities=36% Similarity=0.579 Sum_probs=12.3
Q ss_pred CCCchhHHHHHHhh
Q 030225 1 MGTGKTSLVLRFVK 14 (181)
Q Consensus 1 ~~~GKttLl~~l~~ 14 (181)
|||||||+.+.|..
T Consensus 18 ~GsGKsTla~~la~ 31 (233)
T 3r20_A 18 AGTGKSSVSRGLAR 31 (233)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 79999999998863
No 455
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=88.37 E-value=0.19 Score=40.31 Aligned_cols=15 Identities=20% Similarity=0.282 Sum_probs=13.1
Q ss_pred CCCchhHHHHHHhhC
Q 030225 1 MGTGKTSLVLRFVKG 15 (181)
Q Consensus 1 ~~~GKttLl~~l~~~ 15 (181)
+|+|||||++.+.+.
T Consensus 112 NGaGKSTLLkiL~Gl 126 (608)
T 3j16_B 112 NGIGKSTALKILAGK 126 (608)
T ss_dssp TTSSHHHHHHHHHTS
T ss_pred CCChHHHHHHHHhcC
Confidence 599999999998863
No 456
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=88.27 E-value=0.18 Score=39.78 Aligned_cols=15 Identities=27% Similarity=0.390 Sum_probs=13.1
Q ss_pred CCCchhHHHHHHhhC
Q 030225 1 MGTGKTSLVLRFVKG 15 (181)
Q Consensus 1 ~~~GKttLl~~l~~~ 15 (181)
+|||||||++.+.+.
T Consensus 34 NGaGKSTLlkiL~Gl 48 (538)
T 3ozx_A 34 NGVGKTTVLKILAGE 48 (538)
T ss_dssp TTSSHHHHHHHHTTS
T ss_pred CCCcHHHHHHHHhcC
Confidence 599999999998874
No 457
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=88.16 E-value=0.13 Score=36.39 Aligned_cols=24 Identities=8% Similarity=0.331 Sum_probs=17.1
Q ss_pred eEEEEecCCCCCHHHHHHHHHHHHHh
Q 030225 130 SFLETSAKSAHNVNELFYEIAKRLAE 155 (181)
Q Consensus 130 ~~~~~Sa~~~~gi~~~~~~l~~~~~~ 155 (181)
+++.+.+-. .++++++.|.+.+.+
T Consensus 235 ~~~~Id~~~--~~eev~~~I~~~l~~ 258 (263)
T 1p5z_B 235 PILTLDVNE--DFKDKYESLVEKVKE 258 (263)
T ss_dssp CEEEEECCS--CHHHHHHHHHHHHHH
T ss_pred CEEEEECCC--CHHHHHHHHHHHHHH
Confidence 466666543 789998888887754
No 458
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=88.08 E-value=0.22 Score=33.34 Aligned_cols=38 Identities=16% Similarity=0.127 Sum_probs=20.5
Q ss_pred cEEEEEEECCChhHH-HHHHHHHHHHHHhCCCCceEEEEEeCCC
Q 030225 66 AAAVVVYDITSMDSF-ERAKKWVQELQRQGNPNLIMFLVANKVD 108 (181)
Q Consensus 66 d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~p~ivi~nK~D 108 (181)
+.-++++|-.. .+ .++..++..+.. .+.++++.|...|
T Consensus 76 ~~dvviIDE~Q--~~~~~~~~~l~~l~~---~~~~Vi~~Gl~~~ 114 (184)
T 2orw_A 76 DTRGVFIDEVQ--FFNPSLFEVVKDLLD---RGIDVFCAGLDLT 114 (184)
T ss_dssp TEEEEEECCGG--GSCTTHHHHHHHHHH---TTCEEEEEEESBC
T ss_pred CCCEEEEECcc--cCCHHHHHHHHHHHH---CCCCEEEEeeccc
Confidence 34466777432 22 223334443433 3678888888766
No 459
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=88.06 E-value=0.2 Score=37.16 Aligned_cols=15 Identities=33% Similarity=0.339 Sum_probs=13.2
Q ss_pred CCCchhHHHHHHhhC
Q 030225 1 MGTGKTSLVLRFVKG 15 (181)
Q Consensus 1 ~~~GKttLl~~l~~~ 15 (181)
||+|||||++.+...
T Consensus 53 ~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 53 PGTGKTVTLRKLWEL 67 (389)
T ss_dssp TTSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 799999999998764
No 460
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=88.02 E-value=0.21 Score=36.10 Aligned_cols=15 Identities=33% Similarity=0.366 Sum_probs=13.3
Q ss_pred CCCchhHHHHHHhhC
Q 030225 1 MGTGKTSLVLRFVKG 15 (181)
Q Consensus 1 ~~~GKttLl~~l~~~ 15 (181)
||+|||+|++.+...
T Consensus 58 ~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 58 PGCGKTLLAKAIANE 72 (301)
T ss_dssp SSSSHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHH
Confidence 799999999998864
No 461
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=88.01 E-value=0.22 Score=34.02 Aligned_cols=23 Identities=13% Similarity=0.306 Sum_probs=16.2
Q ss_pred EEEEecCCCCCHHHHHHHHHHHHHh
Q 030225 131 FLETSAKSAHNVNELFYEIAKRLAE 155 (181)
Q Consensus 131 ~~~~Sa~~~~gi~~~~~~l~~~~~~ 155 (181)
+..+.+. ..++++++.+.+.+.+
T Consensus 182 l~~Idg~--~~~~eV~~~I~~~l~e 204 (206)
T 3sr0_A 182 LRIIDAS--KPVEEVYRQVLEVIGD 204 (206)
T ss_dssp EEEEETT--SCHHHHHHHHHHHHC-
T ss_pred EEEEECC--CCHHHHHHHHHHHHcc
Confidence 5566653 3699999999887754
No 462
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=87.91 E-value=0.19 Score=40.21 Aligned_cols=15 Identities=40% Similarity=0.410 Sum_probs=13.1
Q ss_pred CCCchhHHHHHHhhC
Q 030225 1 MGTGKTSLVLRFVKG 15 (181)
Q Consensus 1 ~~~GKttLl~~l~~~ 15 (181)
+|+|||||++.+.+.
T Consensus 126 NGsGKSTLlkiL~Gl 140 (607)
T 3bk7_A 126 NGTGKTTAVKILAGQ 140 (607)
T ss_dssp TTSSHHHHHHHHTTS
T ss_pred CCChHHHHHHHHhCC
Confidence 599999999998864
No 463
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=87.89 E-value=0.23 Score=34.15 Aligned_cols=27 Identities=11% Similarity=0.076 Sum_probs=18.8
Q ss_pred CCeEEEEecCCCCCHHHHHHHHHHHHHhh
Q 030225 128 GLSFLETSAKSAHNVNELFYEIAKRLAEV 156 (181)
Q Consensus 128 ~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~ 156 (181)
...++.+.+. ..++++++.+.+.+.+.
T Consensus 181 ~~~~~vIDa~--~s~eeV~~~I~~~l~~~ 207 (213)
T 4edh_A 181 PERYQVLDAG--LPLAEVQAGLDRLLPNL 207 (213)
T ss_dssp TTTEEEEETT--SCHHHHHHHHHHHHHHH
T ss_pred CCcEEEEeCC--CCHHHHHHHHHHHHHHH
Confidence 3357777764 47899988888776553
No 464
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=87.87 E-value=0.2 Score=39.92 Aligned_cols=15 Identities=20% Similarity=0.370 Sum_probs=12.9
Q ss_pred CCCchhHHHHHHhhC
Q 030225 1 MGTGKTSLVLRFVKG 15 (181)
Q Consensus 1 ~~~GKttLl~~l~~~ 15 (181)
+|||||||++.+.+-
T Consensus 378 sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 378 SGSGKSTIASLITRF 392 (582)
T ss_dssp TTSSHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHhhc
Confidence 699999999988764
No 465
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=87.80 E-value=0.44 Score=34.09 Aligned_cols=67 Identities=16% Similarity=0.199 Sum_probs=41.1
Q ss_pred EEEEEEeCCChhhhhccchhhccCCcEEEEEEECCChhHHHHHHH---H-------------H---HHHHHh-CCCC-ce
Q 030225 41 IKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKK---W-------------V---QELQRQ-GNPN-LI 99 (181)
Q Consensus 41 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~---~-------------~---~~~~~~-~~~~-~p 99 (181)
+.+.|+|+|+.. .......+..+|.+|++...+. .+...+.. + + +.+... ..+. .+
T Consensus 104 yD~viiD~p~~~--~~~~~~~l~~aD~viiv~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 180 (286)
T 2xj4_A 104 CDFILIDTPGGD--SAITRMAHGRADLVVTPMNDSF-VDFDMLGTVDPVTLELTKPSLYSLTVWEGRKQRALSGQRQAMD 180 (286)
T ss_dssp CSEEEEECCSSC--CHHHHHHHHTCSEEEEEEESSH-HHHTTTEEECTTTCCEEEECHHHHHHHHHHHHHHHHCSSCCCE
T ss_pred CCEEEEcCCCCc--cHHHHHHHHHCCEEEEEEcCCc-cHHHHHHHHHHHhhhccccchhhhhhhcchhhhhhccCCcccc
Confidence 568899999864 3334566788999999998752 33322211 1 2 222221 1245 67
Q ss_pred EEEEEeCCCCc
Q 030225 100 MFLVANKVDLE 110 (181)
Q Consensus 100 ~ivi~nK~D~~ 110 (181)
+.+|+|+.+..
T Consensus 181 ~~vV~N~~~~~ 191 (286)
T 2xj4_A 181 WVVLRNRLATT 191 (286)
T ss_dssp EEEEEECCTTC
T ss_pred EEEEEeeecCC
Confidence 78999999853
No 466
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=87.79 E-value=0.18 Score=34.64 Aligned_cols=14 Identities=29% Similarity=0.562 Sum_probs=12.2
Q ss_pred CCCchhHHHHHHhh
Q 030225 1 MGTGKTSLVLRFVK 14 (181)
Q Consensus 1 ~~~GKttLl~~l~~ 14 (181)
||+||||++.++..
T Consensus 67 PGtGKTt~a~ala~ 80 (212)
T 1tue_A 67 ANTGKSYFGMSFIH 80 (212)
T ss_dssp GGGCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 79999999888865
No 467
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=87.69 E-value=0.23 Score=35.99 Aligned_cols=85 Identities=14% Similarity=0.081 Sum_probs=46.9
Q ss_pred EEEEEEeCCChhhhhc--c--chhhcc--CCcEEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccc
Q 030225 41 IKFDIWDTAGQERYHS--L--APMYYR--GAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRK 114 (181)
Q Consensus 41 ~~~~i~D~~G~~~~~~--~--~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D~~~~~~ 114 (181)
+.+.|+||+|...... + ....+. ..+..++|+|++.. ...+..+...+. .-+ ..-+|.||.|....
T Consensus 183 ~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~~~~~~~~~---~l~-~~giVltk~D~~~~-- 254 (296)
T 2px0_A 183 YDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK--YEDMKHIVKRFS---SVP-VNQYIFTKIDETTS-- 254 (296)
T ss_dssp SSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHHHHHTTTTS---SSC-CCEEEEECTTTCSC--
T ss_pred CCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHHHHHHHHHh---cCC-CCEEEEeCCCcccc--
Confidence 4688999999653321 1 112232 36788899987632 333333333221 111 23456799996431
Q ss_pred CCHHHHHHHHHHcCCeEEEEe
Q 030225 115 VKNEEGELYAQENGLSFLETS 135 (181)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~S 135 (181)
...+...+...++++.+++
T Consensus 255 --~g~~~~~~~~~~~pi~~i~ 273 (296)
T 2px0_A 255 --LGSVFNILAESKIGVGFMT 273 (296)
T ss_dssp --CHHHHHHHHTCSCCCSEEC
T ss_pred --hhHHHHHHHHHCcCEEEEE
Confidence 2245566667788876554
No 468
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=87.61 E-value=0.23 Score=36.16 Aligned_cols=86 Identities=17% Similarity=0.082 Sum_probs=46.8
Q ss_pred EEEEEEeCCChhhhhc-c------chhh-----ccCCcEEEEEEECCChhHHHHHHHHHHHHHHhCCCCceEEEEEeCCC
Q 030225 41 IKFDIWDTAGQERYHS-L------APMY-----YRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVD 108 (181)
Q Consensus 41 ~~~~i~D~~G~~~~~~-~------~~~~-----~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivi~nK~D 108 (181)
+.+.++|+||...... + .... -..++.+++|+|.... .+.+. ....+... -...-+|.||.|
T Consensus 187 ~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~--~~~l~-~a~~~~~~---~~i~gvVlTk~D 260 (306)
T 1vma_A 187 KDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG--QNGLV-QAKIFKEA---VNVTGIILTKLD 260 (306)
T ss_dssp CSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH--HHHHH-HHHHHHHH---SCCCEEEEECGG
T ss_pred CCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCC--HHHHH-HHHHHHhc---CCCCEEEEeCCC
Confidence 4578999999522111 0 0111 1347889999998733 22222 12223222 123456679999
Q ss_pred CcccccCCHHHHHHHHHHcCCeEEEEec
Q 030225 109 LEEKRKVKNEEGELYAQENGLSFLETSA 136 (181)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 136 (181)
.... .-.+.......+.|+.+++.
T Consensus 261 ~~~~----gG~~l~~~~~~~~Pi~~i~~ 284 (306)
T 1vma_A 261 GTAK----GGITLAIARELGIPIKFIGV 284 (306)
T ss_dssp GCSC----TTHHHHHHHHHCCCEEEEEC
T ss_pred Cccc----hHHHHHHHHHHCCCEEEEeC
Confidence 5321 12356667778888877743
No 469
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=87.59 E-value=0.21 Score=39.40 Aligned_cols=16 Identities=31% Similarity=0.349 Sum_probs=13.6
Q ss_pred CCCchhHHHHHHhhCC
Q 030225 1 MGTGKTSLVLRFVKGQ 16 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~ 16 (181)
+|||||||++.+.+..
T Consensus 303 nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 303 NGIGKTTFARILVGEI 318 (538)
T ss_dssp TTSSHHHHHHHHTTSS
T ss_pred CCCCHHHHHHHHhCCC
Confidence 5999999999998743
No 470
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=87.38 E-value=0.22 Score=39.64 Aligned_cols=15 Identities=27% Similarity=0.483 Sum_probs=13.0
Q ss_pred CCCchhHHHHHHhhC
Q 030225 1 MGTGKTSLVLRFVKG 15 (181)
Q Consensus 1 ~~~GKttLl~~l~~~ 15 (181)
+|||||||++.+.+-
T Consensus 378 sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 378 SGSGKSTIANLFTRF 392 (582)
T ss_pred CCCCHHHHHHHHhcC
Confidence 699999999988764
No 471
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=87.34 E-value=0.24 Score=36.37 Aligned_cols=15 Identities=40% Similarity=0.627 Sum_probs=13.2
Q ss_pred CCCchhHHHHHHhhC
Q 030225 1 MGTGKTSLVLRFVKG 15 (181)
Q Consensus 1 ~~~GKttLl~~l~~~ 15 (181)
||+||||+++.+.+.
T Consensus 55 ~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 55 PGTGKTSTIVALARE 69 (340)
T ss_dssp SSSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 799999999998764
No 472
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=87.33 E-value=0.24 Score=33.77 Aligned_cols=26 Identities=8% Similarity=0.175 Sum_probs=18.0
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHHHHhh
Q 030225 129 LSFLETSAKSAHNVNELFYEIAKRLAEV 156 (181)
Q Consensus 129 ~~~~~~Sa~~~~gi~~~~~~l~~~~~~~ 156 (181)
-.+..+.|. ..++++.+.+.+.+.+.
T Consensus 176 ~~~~~IDa~--~~~e~V~~~i~~~i~~~ 201 (205)
T 4hlc_A 176 QRFKSVNAD--QPLENVVEDTYQTIIKY 201 (205)
T ss_dssp TTEEEEETT--SCHHHHHHHHHHHHHHH
T ss_pred CCEEEEECC--CCHHHHHHHHHHHHHHH
Confidence 346667663 46888888888777653
No 473
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=87.25 E-value=0.17 Score=40.00 Aligned_cols=15 Identities=27% Similarity=0.459 Sum_probs=13.0
Q ss_pred CCCchhHHHHHHhhC
Q 030225 1 MGTGKTSLVLRFVKG 15 (181)
Q Consensus 1 ~~~GKttLl~~l~~~ 15 (181)
+|||||||++.|.+.
T Consensus 378 sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 378 SGAGKSTLARALAAR 392 (552)
T ss_dssp SCHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHh
Confidence 699999999988754
No 474
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=87.20 E-value=0.25 Score=31.42 Aligned_cols=16 Identities=19% Similarity=0.083 Sum_probs=13.5
Q ss_pred CCCchhHHHHHHhhCC
Q 030225 1 MGTGKTSLVLRFVKGQ 16 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~ 16 (181)
||+|||+|++.+....
T Consensus 33 ~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 33 PGTGRMTGARYLHQFG 48 (145)
T ss_dssp TTSSHHHHHHHHHHSS
T ss_pred CCCCHHHHHHHHHHhC
Confidence 7999999999887643
No 475
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=87.19 E-value=0.25 Score=36.60 Aligned_cols=15 Identities=33% Similarity=0.512 Sum_probs=13.0
Q ss_pred CCCchhHHHHHHhhC
Q 030225 1 MGTGKTSLVLRFVKG 15 (181)
Q Consensus 1 ~~~GKttLl~~l~~~ 15 (181)
||+|||||++.+...
T Consensus 53 ~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 53 TGTGKTAVARLVLRR 67 (387)
T ss_dssp TTSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 799999999988753
No 476
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=87.14 E-value=0.25 Score=36.00 Aligned_cols=15 Identities=33% Similarity=0.503 Sum_probs=13.0
Q ss_pred CCCchhHHHHHHhhC
Q 030225 1 MGTGKTSLVLRFVKG 15 (181)
Q Consensus 1 ~~~GKttLl~~l~~~ 15 (181)
+|+|||||++.+...
T Consensus 40 ~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 40 RRVGKSSLLRAFLNE 54 (350)
T ss_dssp TTSSHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHH
Confidence 689999999998754
No 477
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=87.12 E-value=5.3 Score=28.34 Aligned_cols=88 Identities=16% Similarity=0.178 Sum_probs=49.7
Q ss_pred EEEEEEEeCCChhhhhccc-hhhccCCcEEEEEEECCChhHHHHHHHHHHHHHHhC-CCCce-EEEEEeCCCCcccccCC
Q 030225 40 TIKFDIWDTAGQERYHSLA-PMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQG-NPNLI-MFLVANKVDLEEKRKVK 116 (181)
Q Consensus 40 ~~~~~i~D~~G~~~~~~~~-~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p-~ivi~nK~D~~~~~~~~ 116 (181)
.+.+.|+|+||........ ......+|.+|++... +..++..+...++.+.... ..+.+ .-+|.|+.+... .
T Consensus 118 ~yD~ViID~~~~~~~~~~~~~~~~~~aD~viiv~~~-~~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~~~----~ 192 (289)
T 2afh_E 118 DLDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCSG-EMMAMYAANNISKGIVKYANSGSVRLGGLICNSRNTDR----E 192 (289)
T ss_dssp TCSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEECS-SHHHHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCCTT----H
T ss_pred CCCEEEEeCCCccccchhhhhhhhhhCCEEEEEecC-CHHHHHHHHHHHHHHHHHHhcCCCceEEEEEecCCchh----H
Confidence 4678899999853221111 1223568999999886 4566666665555554421 13445 457789886321 1
Q ss_pred HHHHHHHHHHcCCeEE
Q 030225 117 NEEGELYAQENGLSFL 132 (181)
Q Consensus 117 ~~~~~~~~~~~~~~~~ 132 (181)
.+....+.+.++.+++
T Consensus 193 ~~~~~~l~~~~g~~~l 208 (289)
T 2afh_E 193 DELIIALANKLGTQMI 208 (289)
T ss_dssp HHHHHHHHHHHTSCEE
T ss_pred HHHHHHHHHHcCcccc
Confidence 2333445555666554
No 478
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=87.10 E-value=0.25 Score=37.45 Aligned_cols=13 Identities=31% Similarity=0.478 Sum_probs=11.7
Q ss_pred CCCchhHHHHHHh
Q 030225 1 MGTGKTSLVLRFV 13 (181)
Q Consensus 1 ~~~GKttLl~~l~ 13 (181)
||+|||||+..|+
T Consensus 187 sGsGKTTLl~~la 199 (400)
T 3lda_A 187 FRTGKSQLCHTLA 199 (400)
T ss_dssp TTSSHHHHHHHHH
T ss_pred CCCChHHHHHHHH
Confidence 7999999999875
No 479
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=87.08 E-value=0.2 Score=40.01 Aligned_cols=15 Identities=20% Similarity=0.465 Sum_probs=13.0
Q ss_pred CCCchhHHHHHHhhC
Q 030225 1 MGTGKTSLVLRFVKG 15 (181)
Q Consensus 1 ~~~GKttLl~~l~~~ 15 (181)
+|||||||++.+.+-
T Consensus 379 sGsGKSTLl~~l~g~ 393 (595)
T 2yl4_A 379 SGSGKSTVLSLLLRL 393 (595)
T ss_dssp TTSSSTHHHHHHTTS
T ss_pred CCCCHHHHHHHHhcC
Confidence 699999999988764
No 480
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=87.07 E-value=0.27 Score=33.94 Aligned_cols=23 Identities=17% Similarity=0.391 Sum_probs=17.1
Q ss_pred EEEEecCCCCCHHHHHHHHHHHHHh
Q 030225 131 FLETSAKSAHNVNELFYEIAKRLAE 155 (181)
Q Consensus 131 ~~~~Sa~~~~gi~~~~~~l~~~~~~ 155 (181)
++.+.+. ..++++++.|...+.+
T Consensus 191 l~~Idg~--~~~eeV~~~I~~~l~k 213 (217)
T 3umf_A 191 VITIDAS--GTVDAIFDKVNHELQK 213 (217)
T ss_dssp EEEEETT--SCHHHHHHHHHHHHHT
T ss_pred EEEEECC--CCHHHHHHHHHHHHHH
Confidence 5666654 3699999999887754
No 481
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=87.03 E-value=0.26 Score=36.02 Aligned_cols=15 Identities=27% Similarity=0.282 Sum_probs=13.0
Q ss_pred CCCchhHHHHHHhhC
Q 030225 1 MGTGKTSLVLRFVKG 15 (181)
Q Consensus 1 ~~~GKttLl~~l~~~ 15 (181)
+|+|||||++.+...
T Consensus 39 ~G~GKT~L~~~~~~~ 53 (357)
T 2fna_A 39 RRTGKSSIIKIGINE 53 (357)
T ss_dssp TTSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHh
Confidence 699999999998753
No 482
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=87.02 E-value=0.21 Score=34.73 Aligned_cols=26 Identities=12% Similarity=0.174 Sum_probs=18.2
Q ss_pred CCeEEEEecCCCCCHHHHHHHHHHHHHh
Q 030225 128 GLSFLETSAKSAHNVNELFYEIAKRLAE 155 (181)
Q Consensus 128 ~~~~~~~Sa~~~~gi~~~~~~l~~~~~~ 155 (181)
...++.+.+. ..++++++.+.+.+.+
T Consensus 201 ~~~~~vIDa~--~s~eeV~~~I~~~l~~ 226 (227)
T 3v9p_A 201 PHRFVIVDSS--EPIAQIRKQLEGVLAA 226 (227)
T ss_dssp TTTEEEEETT--SCHHHHHHHHHHHHHH
T ss_pred cCCEEEEeCC--CCHHHHHHHHHHHHHh
Confidence 3356777664 5799999988877653
No 483
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=86.91 E-value=0.26 Score=39.52 Aligned_cols=16 Identities=31% Similarity=0.389 Sum_probs=13.6
Q ss_pred CCCchhHHHHHHhhCC
Q 030225 1 MGTGKTSLVLRFVKGQ 16 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~ 16 (181)
+|+|||||++.+.+..
T Consensus 391 NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 391 NGIGKTTFVKMLAGVE 406 (607)
T ss_dssp TTSSHHHHHHHHHTSS
T ss_pred CCCCHHHHHHHHhcCC
Confidence 5999999999998743
No 484
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=86.89 E-value=0.26 Score=38.88 Aligned_cols=16 Identities=31% Similarity=0.389 Sum_probs=13.7
Q ss_pred CCCchhHHHHHHhhCC
Q 030225 1 MGTGKTSLVLRFVKGQ 16 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~ 16 (181)
+|||||||++.+.+..
T Consensus 321 NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 321 NGIGKTTFVKMLAGVE 336 (538)
T ss_dssp TTSSHHHHHHHHHTSS
T ss_pred CCCCHHHHHHHHhCCC
Confidence 5899999999998743
No 485
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=86.76 E-value=0.29 Score=34.26 Aligned_cols=25 Identities=12% Similarity=0.216 Sum_probs=18.6
Q ss_pred EEEEecCCCCCHHHHHHHHHHHHHhhC
Q 030225 131 FLETSAKSAHNVNELFYEIAKRLAEVN 157 (181)
Q Consensus 131 ~~~~Sa~~~~gi~~~~~~l~~~~~~~~ 157 (181)
++.+.+. ..++++.+.+...+.+.-
T Consensus 206 ~~vIDa~--~sieeV~~~I~~~l~~~l 230 (236)
T 3lv8_A 206 VVMIDAA--QSIEQVTADIRRALQDWL 230 (236)
T ss_dssp EEEEETT--SCHHHHHHHHHHHHHHHH
T ss_pred EEEEeCC--CCHHHHHHHHHHHHHHHH
Confidence 6667763 479999999888877653
No 486
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=86.74 E-value=0.28 Score=35.33 Aligned_cols=14 Identities=43% Similarity=0.707 Sum_probs=11.7
Q ss_pred CCCchhHHHHHHhh
Q 030225 1 MGTGKTSLVLRFVK 14 (181)
Q Consensus 1 ~~~GKttLl~~l~~ 14 (181)
||+|||+|++.+..
T Consensus 76 ~GtGKT~la~~la~ 89 (309)
T 3syl_A 76 PGTGKTTVALKMAG 89 (309)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 79999999986654
No 487
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=86.72 E-value=0.16 Score=36.62 Aligned_cols=14 Identities=21% Similarity=0.456 Sum_probs=9.3
Q ss_pred CCCchhHHHHHHhh
Q 030225 1 MGTGKTSLVLRFVK 14 (181)
Q Consensus 1 ~~~GKttLl~~l~~ 14 (181)
+||||||+.+.|..
T Consensus 14 sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 14 SGAGTSTVKHTFDQ 27 (290)
T ss_dssp C---CCTHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 69999999998864
No 488
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=86.66 E-value=0.28 Score=34.70 Aligned_cols=15 Identities=27% Similarity=0.406 Sum_probs=13.2
Q ss_pred CCCchhHHHHHHhhC
Q 030225 1 MGTGKTSLVLRFVKG 15 (181)
Q Consensus 1 ~~~GKttLl~~l~~~ 15 (181)
||+|||+|++.+...
T Consensus 73 ~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 73 PHSGKTALAAKIAEE 87 (272)
T ss_dssp TTSSHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHH
Confidence 799999999998764
No 489
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=86.61 E-value=0.28 Score=35.16 Aligned_cols=15 Identities=40% Similarity=0.552 Sum_probs=12.9
Q ss_pred CCCchhHHHHHHhhC
Q 030225 1 MGTGKTSLVLRFVKG 15 (181)
Q Consensus 1 ~~~GKttLl~~l~~~ 15 (181)
||+|||+|++.+...
T Consensus 59 ~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 59 TGVGKTEIARRLAKL 73 (310)
T ss_dssp TTSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 799999999988753
No 490
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=86.50 E-value=0.29 Score=33.90 Aligned_cols=14 Identities=21% Similarity=0.375 Sum_probs=12.3
Q ss_pred CCCchhHHHHHHhh
Q 030225 1 MGTGKTSLVLRFVK 14 (181)
Q Consensus 1 ~~~GKttLl~~l~~ 14 (181)
+||||||+.+.|..
T Consensus 25 ~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 25 ASSGKSTVAKIIAK 38 (236)
T ss_dssp SCSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 69999999998875
No 491
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=86.43 E-value=0.24 Score=39.61 Aligned_cols=15 Identities=33% Similarity=0.521 Sum_probs=12.8
Q ss_pred CCCchhHHHHHHhhC
Q 030225 1 MGTGKTSLVLRFVKG 15 (181)
Q Consensus 1 ~~~GKttLl~~l~~~ 15 (181)
+|||||||++.+.+-
T Consensus 390 sGsGKSTll~~l~g~ 404 (598)
T 3qf4_B 390 TGSGKTTIVNLLMRF 404 (598)
T ss_dssp TTSSTTHHHHHHTTS
T ss_pred CCCcHHHHHHHHhcC
Confidence 699999999888754
No 492
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=86.33 E-value=0.3 Score=36.61 Aligned_cols=15 Identities=47% Similarity=0.525 Sum_probs=13.0
Q ss_pred CCCchhHHHHHHhhC
Q 030225 1 MGTGKTSLVLRFVKG 15 (181)
Q Consensus 1 ~~~GKttLl~~l~~~ 15 (181)
||+|||||++.+...
T Consensus 61 ~G~GKT~L~~~~~~~ 75 (412)
T 1w5s_A 61 VGIGKTTLAKFTVKR 75 (412)
T ss_dssp CSSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 799999999998753
No 493
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=86.33 E-value=0.3 Score=35.81 Aligned_cols=15 Identities=53% Similarity=0.685 Sum_probs=13.1
Q ss_pred CCCchhHHHHHHhhC
Q 030225 1 MGTGKTSLVLRFVKG 15 (181)
Q Consensus 1 ~~~GKttLl~~l~~~ 15 (181)
||+|||||++.+...
T Consensus 67 ~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 67 PGTGKTSTILALTKE 81 (353)
T ss_dssp TTSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 799999999988754
No 494
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=86.30 E-value=0.29 Score=37.50 Aligned_cols=15 Identities=33% Similarity=0.390 Sum_probs=13.0
Q ss_pred CCCchhHHHHHHhhC
Q 030225 1 MGTGKTSLVLRFVKG 15 (181)
Q Consensus 1 ~~~GKttLl~~l~~~ 15 (181)
||+|||||++.+.+.
T Consensus 139 ~G~GKTtLa~aia~~ 153 (440)
T 2z4s_A 139 VGLGKTHLLQSIGNY 153 (440)
T ss_dssp SSSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 799999999988753
No 495
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=86.19 E-value=0.3 Score=39.17 Aligned_cols=16 Identities=38% Similarity=0.488 Sum_probs=13.6
Q ss_pred CCCchhHHHHHHhhCC
Q 030225 1 MGTGKTSLVLRFVKGQ 16 (181)
Q Consensus 1 ~~~GKttLl~~l~~~~ 16 (181)
+|+|||||++.+.+..
T Consensus 387 NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 387 NGTGKTTLIKLLAGAL 402 (608)
T ss_dssp TTSSHHHHHHHHHTSS
T ss_pred CCCcHHHHHHHHhcCC
Confidence 5999999999998744
No 496
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=86.18 E-value=0.32 Score=33.39 Aligned_cols=26 Identities=12% Similarity=0.119 Sum_probs=18.6
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHHHHhh
Q 030225 129 LSFLETSAKSAHNVNELFYEIAKRLAEV 156 (181)
Q Consensus 129 ~~~~~~Sa~~~~gi~~~~~~l~~~~~~~ 156 (181)
-.++.+.+ ...++++++.+.+.+.+.
T Consensus 182 ~~~~vIDa--~~s~eeV~~~I~~~l~~~ 207 (213)
T 4tmk_A 182 KSIHTIDA--TQPLEAVMDAIRTTVTHW 207 (213)
T ss_dssp TTEEEEET--TSCHHHHHHHHHHHHHHH
T ss_pred CcEEEECC--CCCHHHHHHHHHHHHHHH
Confidence 35666766 357899998888877654
No 497
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=85.99 E-value=0.33 Score=32.97 Aligned_cols=13 Identities=38% Similarity=0.601 Sum_probs=11.3
Q ss_pred CCCchhHHHHHHh
Q 030225 1 MGTGKTSLVLRFV 13 (181)
Q Consensus 1 ~~~GKttLl~~l~ 13 (181)
.|+|||||+.++.
T Consensus 32 NgsGKStil~ai~ 44 (203)
T 3qks_A 32 NGSGKSSLLDAIL 44 (203)
T ss_dssp TTSSHHHHHHHHH
T ss_pred CCCCHHHHHHHHH
Confidence 4899999999874
No 498
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=85.97 E-value=0.33 Score=33.61 Aligned_cols=14 Identities=29% Similarity=0.370 Sum_probs=12.1
Q ss_pred CCCchhHHHHHHhh
Q 030225 1 MGTGKTSLVLRFVK 14 (181)
Q Consensus 1 ~~~GKttLl~~l~~ 14 (181)
+||||||+++.|..
T Consensus 30 ~g~GKst~~~~l~~ 43 (223)
T 3ld9_A 30 DGSGKTTQSHLLAE 43 (223)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 69999999998864
No 499
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=85.96 E-value=0.33 Score=33.42 Aligned_cols=29 Identities=14% Similarity=-0.004 Sum_probs=19.9
Q ss_pred CCeEEEEecCCCCCHHHHHHHHHHHHHhhC
Q 030225 128 GLSFLETSAKSAHNVNELFYEIAKRLAEVN 157 (181)
Q Consensus 128 ~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~ 157 (181)
...++.+.+- +..++++.+.+.+.+.+.-
T Consensus 176 ~~~~~vID~a-~~s~eeV~~~I~~~i~~~l 204 (216)
T 3tmk_A 176 DESITIVDVT-NKGIQEVEALIWQIVEPVL 204 (216)
T ss_dssp CCSEEEEECT-TCCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCC-CCCHHHHHHHHHHHHHHHH
Confidence 3467777732 3578999998888776653
No 500
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=85.92 E-value=0.33 Score=32.44 Aligned_cols=15 Identities=13% Similarity=0.220 Sum_probs=13.2
Q ss_pred CCCchhHHHHHHhhC
Q 030225 1 MGTGKTSLVLRFVKG 15 (181)
Q Consensus 1 ~~~GKttLl~~l~~~ 15 (181)
++||||+|..+|...
T Consensus 8 ~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 8 ARSGKSRHAEALIGD 22 (180)
T ss_dssp TTSSHHHHHHHHHCS
T ss_pred CCCcHHHHHHHHHhc
Confidence 689999999999855
Done!