BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030227
(181 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q15427|SF3B4_HUMAN Splicing factor 3B subunit 4 OS=Homo sapiens GN=SF3B4 PE=1 SV=1
Length = 424
Score = 82.8 bits (203), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 57/77 (74%), Gaps = 1/77 (1%)
Query: 6 NSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADY 65
N VY+G LDEKVSE +L+++ +QAG VV+ ++P+D+ T + +G+ FVE+ SEE ADY
Sbjct: 10 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADY 69
Query: 66 AIKLFSGIVTLYNRTLR 82
AIK+ + ++ LY + +R
Sbjct: 70 AIKIMN-MIKLYGKPIR 85
Score = 57.0 bits (136), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 59/109 (54%), Gaps = 4/109 (3%)
Query: 4 NSNSGCNVYIGNLDEKVSERVLYDILIQAGRVVDL-YIPRDKETDKPKGFAFVEYESEEI 62
N + G N++IGNLD ++ E++LYD G ++ I RD +T KG+AF+ + S +
Sbjct: 95 NLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDA 154
Query: 63 ADYAIKLFSGIVTLYNR--TLRFALSGQDKNTQNSSMTTTPLSSRKSRS 109
+D AI+ +G L NR T+ +A K ++ S L+++ S
Sbjct: 155 SDAAIEAMNG-QYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPLS 202
>sp|Q6AYL5|SF3B4_RAT Splicing factor 3B subunit 4 OS=Rattus norvegicus GN=Sf3b4 PE=2
SV=1
Length = 424
Score = 82.4 bits (202), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 57/77 (74%), Gaps = 1/77 (1%)
Query: 6 NSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADY 65
N VY+G LDEKVSE +L+++ +QAG VV+ ++P+D+ T + +G+ FVE+ SEE ADY
Sbjct: 10 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADY 69
Query: 66 AIKLFSGIVTLYNRTLR 82
AIK+ + ++ LY + +R
Sbjct: 70 AIKIMN-MIKLYGKPIR 85
Score = 57.0 bits (136), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 59/109 (54%), Gaps = 4/109 (3%)
Query: 4 NSNSGCNVYIGNLDEKVSERVLYDILIQAGRVVDL-YIPRDKETDKPKGFAFVEYESEEI 62
N + G N++IGNLD ++ E++LYD G ++ I RD +T KG+AF+ + S +
Sbjct: 95 NLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDA 154
Query: 63 ADYAIKLFSGIVTLYNR--TLRFALSGQDKNTQNSSMTTTPLSSRKSRS 109
+D AI+ +G L NR T+ +A K ++ S L+++ S
Sbjct: 155 SDAAIEAMNG-QYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPLS 202
>sp|Q8QZY9|SF3B4_MOUSE Splicing factor 3B subunit 4 OS=Mus musculus GN=Sf3b4 PE=2 SV=1
Length = 424
Score = 82.4 bits (202), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 57/77 (74%), Gaps = 1/77 (1%)
Query: 6 NSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADY 65
N VY+G LDEKVSE +L+++ +QAG VV+ ++P+D+ T + +G+ FVE+ SEE ADY
Sbjct: 10 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADY 69
Query: 66 AIKLFSGIVTLYNRTLR 82
AIK+ + ++ LY + +R
Sbjct: 70 AIKIMN-MIKLYGKPIR 85
Score = 57.0 bits (136), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 59/109 (54%), Gaps = 4/109 (3%)
Query: 4 NSNSGCNVYIGNLDEKVSERVLYDILIQAGRVVDL-YIPRDKETDKPKGFAFVEYESEEI 62
N + G N++IGNLD ++ E++LYD G ++ I RD +T KG+AF+ + S +
Sbjct: 95 NLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDA 154
Query: 63 ADYAIKLFSGIVTLYNR--TLRFALSGQDKNTQNSSMTTTPLSSRKSRS 109
+D AI+ +G L NR T+ +A K ++ S L+++ S
Sbjct: 155 SDAAIEAMNG-QYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPLS 202
>sp|Q09442|SF3B4_CAEEL Splicing factor 3B subunit 4 OS=Caenorhabditis elegans GN=sap-49
PE=1 SV=2
Length = 388
Score = 80.5 bits (197), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 59/87 (67%), Gaps = 2/87 (2%)
Query: 6 NSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADY 65
N +Y+G LDEKVSE +L+++++QAG VV + +P+D+ T +GF FVE+ EE ADY
Sbjct: 10 NQDATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADY 69
Query: 66 AIKLFSGIVTLYNRTLRF-ALSGQDKN 91
AIK+ + ++ LY + ++ S +KN
Sbjct: 70 AIKILN-MIKLYGKPIKVNKASAHEKN 95
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 80/164 (48%), Gaps = 24/164 (14%)
Query: 4 NSNSGCNVYIGNLDEKVSERVLYDILIQAGRVVDL-YIPRDKETDKPKGFAFVEYESEEI 62
N + G N+++GNLD +V E++LYD G ++ + I RD ++ KGFAF+ + S E
Sbjct: 95 NMDVGANIFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEA 154
Query: 63 ADYAIKLFSGIVTLYNR--TLRFALSGQDKNTQNSSMTTTPLSSR-----KSR-----SD 110
+D A++ +G L NR T+ +A K ++ + L+++ K R SD
Sbjct: 155 SDTALEAMNGQF-LCNRAITVSYAFKRDSKGERHGTAAERMLAAQNPLFPKDRPHQVFSD 213
Query: 111 -PVPVPVN---------GMEISHHSMRISEPPPPGVTHESNGYE 144
P+ VP N +H + R PPP + +GY+
Sbjct: 214 VPLGVPANTPLAMPGVHAAIAAHATGRPGYQPPPLMGMAQSGYQ 257
>sp|O14102|SAP49_SCHPO Spliceosome-associated protein 49 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=sap49 PE=3 SV=2
Length = 335
Score = 73.6 bits (179), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 56/85 (65%), Gaps = 1/85 (1%)
Query: 6 NSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADY 65
N +Y+GNLDEKV++ +L+++ +QAG VV+++IPRD+ + GF F E+ E+ +Y
Sbjct: 8 NQDATIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVEY 67
Query: 66 AIKLFSGIVTLYNRTLRFALSGQDK 90
A ++ + V L+ + +R + QD+
Sbjct: 68 ACQILNQ-VKLFGKPIRVNRASQDR 91
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 41/66 (62%), Gaps = 2/66 (3%)
Query: 4 NSNSGCNVYIGNLDEKVSERVLYDILIQAGRVVDL-YIPRDKETDKPKGFAFVEYESEEI 62
N+ G N+++GNLD V ERVLYD G++V + RD E + KG+ FV Y+S E
Sbjct: 94 NTLIGANLFVGNLDPLVDERVLYDTFSALGQLVKAPQVARD-ENGRSKGYGFVSYDSFET 152
Query: 63 ADYAIK 68
AD AI+
Sbjct: 153 ADAAIE 158
>sp|Q9Y580|RBM7_HUMAN RNA-binding protein 7 OS=Homo sapiens GN=RBM7 PE=1 SV=1
Length = 266
Score = 66.6 bits (161), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 57/89 (64%), Gaps = 3/89 (3%)
Query: 11 VYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLF 70
+++GNL+ KV+E +L+++ QAG V+ + IP+DK+ KPK FAFV ++ E YA+ L
Sbjct: 12 LFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDG-KPKQFAFVNFKHEVSVPYAMNLL 70
Query: 71 SGIVTLYNRTLRFAL-SGQDKNTQNSSMT 98
+GI LY R ++ SG Q+ S++
Sbjct: 71 NGI-KLYGRPIKIQFRSGSSHAPQDVSLS 98
>sp|Q99181|HSH49_YEAST Protein HSH49 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=HSH49 PE=1 SV=1
Length = 213
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 68/115 (59%), Gaps = 7/115 (6%)
Query: 1 MSGNSNSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESE 60
M+ +++SG VY+GN+D ++++ LY++ IQ V+ + P+DK +G+AF+E+ ++
Sbjct: 1 MNYSADSGNTVYVGNIDPRITKEQLYELFIQINPVLRIKYPKDKVLQAYQGYAFIEFYNQ 60
Query: 61 EIADYAIKLFSGIVTLYNRTLRFALSGQDKNTQNSSMTTTPLSSRKSRSDPVPVP 115
A YAIK+ + V LY+R ++ + NS+ TT L S S+ +P+
Sbjct: 61 GDAQYAIKIMNNTVRLYDRLIKV------RQVTNST-GTTNLPSNISKDMILPIA 108
>sp|Q3MHY8|RBM7_BOVIN RNA-binding protein 7 OS=Bos taurus GN=RBM7 PE=2 SV=1
Length = 262
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 57/89 (64%), Gaps = 3/89 (3%)
Query: 11 VYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLF 70
+++GNL+ KV+E +L+++ QAG V+ + IP+DK+ KPK FAFV ++ E YA+ L
Sbjct: 12 LFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDG-KPKQFAFVNFKHEVSVPYAMNLL 70
Query: 71 SGIVTLYNRTLRFAL-SGQDKNTQNSSMT 98
+GI L+ R ++ +G +Q S++
Sbjct: 71 NGI-KLFGRPIKIQFRAGSSHASQEVSLS 98
>sp|Q9CQT2|RBM7_MOUSE RNA-binding protein 7 OS=Mus musculus GN=Rbm7 PE=1 SV=1
Length = 265
Score = 63.9 bits (154), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 58/89 (65%), Gaps = 3/89 (3%)
Query: 11 VYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLF 70
+++GNL+ KV+E +L+++ QAG V+ + IP+DK+ K K FAFV ++ E YA+ L
Sbjct: 12 LFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDG-KLKQFAFVNFKHEVSVPYAMNLL 70
Query: 71 SGIVTLYNRTLRFAL-SGQDKNTQNSSMT 98
+GI L+ R ++ SG +Q++S++
Sbjct: 71 NGI-KLFGRPIKIQFRSGSSHASQDASVS 98
>sp|P57052|RBM11_HUMAN Splicing regulator RBM11 OS=Homo sapiens GN=RBM11 PE=1 SV=1
Length = 281
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 46/71 (64%), Gaps = 2/71 (2%)
Query: 11 VYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLF 70
V++GNL+ +V E +LY++ +QAG + + I +D+E KPK F FV ++ E YAI L
Sbjct: 12 VFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALL 70
Query: 71 SGIVTLYNRTL 81
+GI LY R +
Sbjct: 71 NGI-RLYGRPI 80
>sp|Q80YT9|RBM11_MOUSE Splicing regulator RBM11 OS=Mus musculus GN=Rbm11 PE=1 SV=1
Length = 238
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 58/104 (55%), Gaps = 6/104 (5%)
Query: 11 VYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLF 70
V++GNL+ +V E +LY++ +QAG + + + +D++ KPK F FV ++ E YAI L
Sbjct: 12 VFVGNLEARVREEILYELFLQAGPLTKVTLCKDRD-GKPKSFGFVCFKHPESVSYAIALL 70
Query: 71 SGIVTLYNRTL----RFALSGQDKNTQNSSMTTTPLSSRKSRSD 110
+GI LY R + RF S + S + ++S R+D
Sbjct: 71 NGI-RLYGRPINVQYRFGSSRSSEPANQSFESCAKINSHSFRND 113
>sp|Q9QZH3|PPIE_MOUSE Peptidyl-prolyl cis-trans isomerase E OS=Mus musculus GN=Ppie
PE=2 SV=2
Length = 301
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Query: 11 VYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLF 70
+Y+G L E+V ++VL+ I G + D+ IP D ET+K +GFAFVE+E E A AI
Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67
Query: 71 SGIVTLYNRTLRFALS 86
+ L+ RT+R L+
Sbjct: 68 NE-SELFGRTIRVNLA 82
>sp|Q9UNP9|PPIE_HUMAN Peptidyl-prolyl cis-trans isomerase E OS=Homo sapiens GN=PPIE
PE=1 SV=1
Length = 301
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Query: 11 VYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLF 70
+Y+G L E+V ++VL+ I G + D+ IP D ET+K +GFAFVE+E E A AI
Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67
Query: 71 SGIVTLYNRTLRFALS 86
+ L+ RT+R L+
Sbjct: 68 NE-SELFGRTIRVNLA 82
>sp|Q5R723|PPIE_PONAB Peptidyl-prolyl cis-trans isomerase E OS=Pongo abelii GN=PPIE
PE=2 SV=1
Length = 301
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Query: 11 VYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLF 70
+Y+G L E+V ++VL+ I G + D+ IP D ET+K +GFAFVE+E E A AI
Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67
Query: 71 SGIVTLYNRTLRFALS 86
+ L+ RT+R L+
Sbjct: 68 NE-SELFGRTIRVNLA 82
>sp|A4FV72|PPIE_BOVIN Peptidyl-prolyl cis-trans isomerase E OS=Bos taurus GN=PPIE PE=2
SV=1
Length = 301
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Query: 11 VYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLF 70
+Y+G L E+V ++VL+ I G + D+ IP D ET+K +GFAFVE+E E A AI
Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67
Query: 71 SGIVTLYNRTLRFALS 86
+ L+ RT+R L+
Sbjct: 68 NE-SELFGRTIRVNLA 82
>sp|Q9V3G3|PPIE_DROME Peptidyl-prolyl cis-trans isomerase E OS=Drosophila melanogaster
GN=cyp33 PE=1 SV=1
Length = 300
Score = 57.4 bits (137), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Query: 5 SNSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIAD 64
SN +Y+G L ++V+ER+L + I G + D+ +P D E+ + +GFAF+EYE E A
Sbjct: 2 SNDKRTIYVGGLADEVTERLLNNAFIPFGDIADIQMPADYESQRHRGFAFIEYEQSEDAA 61
Query: 65 YAIKLFSGIVTLYNRTLRFALS 86
AI + L RT+R L+
Sbjct: 62 AAIDNMND-SELCGRTIRVNLA 82
>sp|Q55GD6|SF3B4_DICDI Splicing factor 3B subunit 4 OS=Dictyostelium discoideum GN=sf3b4
PE=3 SV=1
Length = 359
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 42/64 (65%)
Query: 6 NSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADY 65
N + I +LD V+E +L ++ IQA VV ++IP+DK T + G A+VE++S A+Y
Sbjct: 10 NHEACLLIRDLDPMVTESLLMELFIQAAPVVKVFIPKDKLTQQHSGRAYVEFQSSSDAEY 69
Query: 66 AIKL 69
A+K+
Sbjct: 70 ALKV 73
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 39/63 (61%), Gaps = 4/63 (6%)
Query: 8 GCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPR--DKETDKPKGFAFVEYESEEIADY 65
G N++IGNLD V ER+L+D + G ++ + P+ E KGFAF+ ++S E +D
Sbjct: 97 GANLFIGNLDADVDERILHDTFSRFGTII--FTPKVMRDENGVSKGFAFINFDSFEASDA 154
Query: 66 AIK 68
AI+
Sbjct: 155 AIE 157
>sp|Q9H0L4|CSTFT_HUMAN Cleavage stimulation factor subunit 2 tau variant OS=Homo sapiens
GN=CSTF2T PE=1 SV=1
Length = 616
Score = 53.9 bits (128), Expect = 5e-07, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 10 NVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKL 69
+V++GN+ + +E L DI + G VV + D+ET KPKG+ F EY+ +E A A++
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 70 FSGIVTLYNRTLRFALSGQDKNTQ 93
+G R LR + +KN +
Sbjct: 77 LNG-REFSGRALRVDNAASEKNKE 99
>sp|Q8C7E9|CSTFT_MOUSE Cleavage stimulation factor subunit 2 tau variant OS=Mus musculus
GN=Cstf2t PE=1 SV=2
Length = 632
Score = 53.5 bits (127), Expect = 7e-07, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 10 NVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKL 69
+V++GN+ + +E L DI + G VV + D+ET KPKG+ F EY+ +E A A++
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 70 FSGIVTLYNRTLRFALSGQDKNTQ 93
+G R LR + +KN +
Sbjct: 77 LNG-REFSGRALRVDNAASEKNKE 99
>sp|Q8BIQ5|CSTF2_MOUSE Cleavage stimulation factor subunit 2 OS=Mus musculus GN=Cstf2
PE=1 SV=2
Length = 580
Score = 53.5 bits (127), Expect = 7e-07, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 10 NVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKL 69
+V++GN+ + +E L DI + G VV + D+ET KPKG+ F EY+ +E A A++
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 70 FSGIVTLYNRTLRFALSGQDKNTQ 93
+G R LR + +KN +
Sbjct: 77 LNG-REFSGRALRVDNAASEKNKE 99
>sp|P33240|CSTF2_HUMAN Cleavage stimulation factor subunit 2 OS=Homo sapiens GN=CSTF2
PE=1 SV=1
Length = 577
Score = 53.1 bits (126), Expect = 9e-07, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 10 NVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKL 69
+V++GN+ + +E L DI + G VV + D+ET KPKG+ F EY+ +E A A++
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 70 FSGIVTLYNRTLRFALSGQDKNTQ 93
+G R LR + +KN +
Sbjct: 77 LNG-REFSGRALRVDNAASEKNKE 99
>sp|Q5RDA3|CSTF2_PONAB Cleavage stimulation factor subunit 2 OS=Pongo abelii GN=CSTF2
PE=2 SV=1
Length = 577
Score = 53.1 bits (126), Expect = 9e-07, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 10 NVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKL 69
+V++GN+ + +E L DI + G VV + D+ET KPKG+ F EY+ +E A A++
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 70 FSGIVTLYNRTLRFALSGQDKNTQ 93
+G R LR + +KN +
Sbjct: 77 LNG-REFSGRALRVDNAASEKNKE 99
>sp|Q8HXM1|CSTF2_BOVIN Cleavage stimulation factor subunit 2 OS=Bos taurus GN=CSTF2 PE=2
SV=1
Length = 572
Score = 53.1 bits (126), Expect = 9e-07, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 10 NVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKL 69
+V++GN+ + +E L DI + G VV + D+ET KPKG+ F EY+ +E A A++
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 70 FSGIVTLYNRTLRFALSGQDKNTQ 93
+G R LR + +KN +
Sbjct: 77 LNG-REFSGRALRVDNAASEKNKE 99
>sp|A8WLV5|EIF3G_CAEBR Eukaryotic translation initiation factor 3 subunit G
OS=Caenorhabditis briggsae GN=eif-3.G.1 PE=3 SV=2
Length = 261
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 1 MSGNSNSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESE 60
M N + + NL ++++E L D+ + GRV+ ++I RDK T PKGFAFV +ES
Sbjct: 173 MERNRSDENTCRVTNLPQEMNEDELRDVFGRIGRVIRIFIARDKITGLPKGFAFVTFESR 232
Query: 61 EIADYAIKLFSGIVTLYNRTLRFALS 86
+ A AI + I +Y+ L+ +
Sbjct: 233 DDAARAIAELNDI-RMYHMVLKVEWT 257
>sp|Q19706|EIF3G_CAEEL Eukaryotic translation initiation factor 3 subunit G
OS=Caenorhabditis elegans GN=eif-3.G PE=3 SV=1
Length = 256
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 13 IGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSG 72
+ NL ++++E L D+ + GRV+ ++I RDK T PKGFAFV +ES + A AI +
Sbjct: 180 VTNLPQEMNEDELRDLFGKIGRVIRIFIARDKVTGLPKGFAFVTFESRDDAARAIAELND 239
Query: 73 IVTLYNRTLRFALS 86
I +Y+ L+ +
Sbjct: 240 I-RMYHMVLKVEWT 252
>sp|P19684|ROC5_NICSY 33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris
PE=1 SV=1
Length = 324
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 39/65 (60%)
Query: 8 GCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAI 67
G +Y+GNL ++ L +I +AG V ++ I D+ TD+ +GFAFV S E A AI
Sbjct: 113 GGRLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAI 172
Query: 68 KLFSG 72
+LF G
Sbjct: 173 RLFDG 177
Score = 33.9 bits (76), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Query: 11 VYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLF 70
+Y+ NL ++ + L D + + D+ + + +GF F+ + S E + A+
Sbjct: 219 LYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTM 278
Query: 71 SGIVTLYNRTLRFALSGQ 88
+ V L R LR ++GQ
Sbjct: 279 NE-VELEGRPLRLNVAGQ 295
>sp|P31209|PABP_SCHPO Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=pab1 PE=1 SV=2
Length = 653
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 10 NVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAI 67
NVYI NLD +++E+ D+ Q G + L + +D + DKP+GF FV Y + E A A+
Sbjct: 262 NVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKD-QNDKPRGFGFVNYANHECAQKAV 318
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 10 NVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKL 69
NV+I NLD + + L+D G+++ + D E KG+ FV ++S E A+ AI+
Sbjct: 169 NVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVD-ELGNAKGYGFVHFDSVESANAAIEH 227
Query: 70 FSGIV 74
+G++
Sbjct: 228 VNGML 232
>sp|Q6IRQ4|RBMX_XENLA RNA-binding motif protein, X chromosome OS=Xenopus laevis GN=rbmx
PE=2 SV=1
Length = 370
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 41/65 (63%)
Query: 10 NVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKL 69
++IG L+ + +E+ L + + GRVV++ + +D+ET+K +GFAFV +ES A A +
Sbjct: 9 KLFIGGLNTETNEKALEAVFCKYGRVVEVLLMKDRETNKSRGFAFVTFESPADAKDAARE 68
Query: 70 FSGIV 74
+G
Sbjct: 69 LNGKA 73
>sp|P30352|SRSF2_CHICK Serine/arginine-rich splicing factor 2 OS=Gallus gallus GN=SRSF2
PE=2 SV=1
Length = 221
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 3/95 (3%)
Query: 9 CNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIK 68
++ + NL + S L + + GRV D+YIPRD+ T + +GFAFV + + A+ A+
Sbjct: 14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73
Query: 69 LFSGIVTLYNRTLRFALS--GQDKNTQNSSMTTTP 101
G V L R LR ++ G+ ++ +S P
Sbjct: 74 AMDGAV-LDGRELRVQMARYGRPPDSHHSRRGPPP 107
>sp|Q9P6P7|YKCG_SCHPO Uncharacterized RNA-binding protein C644.16
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC644.16 PE=4 SV=1
Length = 422
Score = 50.8 bits (120), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 35/63 (55%)
Query: 6 NSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADY 65
N C VY+GN+ +++E + DI Q+G V + D E+ +PKG+ F EY A
Sbjct: 2 NPSCVVYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAAS 61
Query: 66 AIK 68
A++
Sbjct: 62 AVR 64
>sp|O94290|IST3_SCHPO U2 snRNP component ist3 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=cwf29 PE=1 SV=1
Length = 217
Score = 50.8 bits (120), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 11 VYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLF 70
+YIGNLD ++E + + + G VD+ + RDKET K KGFAF++YE + A+
Sbjct: 33 IYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRSTVLAVDNM 92
Query: 71 SGIVTLYNRTLR 82
+ V L +R +R
Sbjct: 93 TN-VKLLDRLVR 103
>sp|Q91VM5|RMXL1_MOUSE RNA binding motif protein, X-linked-like-1 OS=Mus musculus
GN=Rbmxl1 PE=1 SV=1
Length = 388
Score = 50.4 bits (119), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 41/64 (64%)
Query: 9 CNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIK 68
++IG L+ + +E+ L + + GR+V++ + +D+ET+K +GFAFV +ES A A +
Sbjct: 8 GKLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDAAR 67
Query: 69 LFSG 72
+G
Sbjct: 68 DMNG 71
>sp|Q5R1W5|SRSF2_PANTR Serine/arginine-rich splicing factor 2 OS=Pan troglodytes
GN=SRSF2 PE=2 SV=3
Length = 221
Score = 50.1 bits (118), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 9 CNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIK 68
++ + NL + S L + + GRV D+YIPRD+ T + +GFAFV + + A+ A+
Sbjct: 14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73
Query: 69 LFSGIVTLYNRTLRFALS 86
G V L R LR ++
Sbjct: 74 AMDGAV-LDGRELRVQMA 90
>sp|Q4V898|RBMX_RAT RNA-binding motif protein, X chromosome OS=Rattus norvegicus
GN=Rbmx PE=1 SV=1
Length = 390
Score = 50.1 bits (118), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 41/64 (64%)
Query: 9 CNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIK 68
++IG L+ + +E+ L + + GR+V++ + +D+ET+K +GFAFV +ES A A +
Sbjct: 8 GKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAAR 67
Query: 69 LFSG 72
+G
Sbjct: 68 DMNG 71
>sp|Q54BM2|PAP1A_DICDI Polyadenylate-binding protein 1-A OS=Dictyostelium discoideum
GN=pabpc1A PE=1 SV=1
Length = 565
Score = 50.1 bits (118), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 49/105 (46%), Gaps = 18/105 (17%)
Query: 10 NVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKL 69
NV+I NLD+ + + LYD G ++ + D + + KGF FV YE++E AD AI
Sbjct: 99 NVFIKNLDKGIDHKALYDTFSAFGNILSCKVVTD-DGNSSKGFGFVHYETQESADKAIAK 157
Query: 70 FSGIVTLYNRTLRFALSGQDKNTQNSSMTTTPLSSRKSRSDPVPV 114
+G++ ++GQ + P S K R P V
Sbjct: 158 VNGMM----------INGQ-------KVFVGPFKSSKERGQPTEV 185
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 33/66 (50%)
Query: 7 SGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYA 66
G N+YI N+D+ + L ++ Q G + + +D + KGF FV Y + + A A
Sbjct: 282 QGVNLYIKNIDDSIDNDKLREVFSQFGTITSAIVMKDDKATTSKGFGFVCYTAPDEATRA 341
Query: 67 IKLFSG 72
+ +G
Sbjct: 342 VTEMNG 347
Score = 39.3 bits (90), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 6/68 (8%)
Query: 10 NVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAI-- 67
NV+ NL E V L ++L Q G + ++ I D + K KGF F +ES E A +
Sbjct: 189 NVFFKNLSEDVGPDQLKELLQQYGEITNITIMAD-DKGKSKGFGFANFESAEAAKNVVEN 247
Query: 68 ---KLFSG 72
K+F G
Sbjct: 248 ENGKIFHG 255
Score = 37.4 bits (85), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 35/57 (61%)
Query: 11 VYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAI 67
+Y+G+L +VSE+ L++I Q G V ++ + RD T + +A+V Y + A+ A+
Sbjct: 12 LYVGDLLPEVSEQHLFEIFNQVGLVSNIRVCRDTNTRRSLSYAYVNYYNGADAERAL 68
>sp|Q9WV02|RBMX_MOUSE RNA-binding motif protein, X chromosome OS=Mus musculus GN=Rbmx
PE=1 SV=1
Length = 391
Score = 49.7 bits (117), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 41/64 (64%)
Query: 9 CNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIK 68
++IG L+ + +E+ L + + GR+V++ + +D+ET+K +GFAFV +ES A A +
Sbjct: 8 GKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAAR 67
Query: 69 LFSG 72
+G
Sbjct: 68 DMNG 71
>sp|A5A6M3|RBMX_PANTR RNA-binding motif protein, X chromosome OS=Pan troglodytes
GN=RBMX PE=2 SV=1
Length = 391
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 41/64 (64%)
Query: 9 CNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIK 68
++IG L+ + +E+ L + + GR+V++ + +D+ET+K +GFAFV +ES A A +
Sbjct: 8 GKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAAR 67
Query: 69 LFSG 72
+G
Sbjct: 68 DMNG 71
>sp|P38159|RBMX_HUMAN RNA-binding motif protein, X chromosome OS=Homo sapiens GN=RBMX
PE=1 SV=3
Length = 391
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 41/64 (64%)
Query: 9 CNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIK 68
++IG L+ + +E+ L + + GR+V++ + +D+ET+K +GFAFV +ES A A +
Sbjct: 8 GKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAAR 67
Query: 69 LFSG 72
+G
Sbjct: 68 DMNG 71
>sp|Q4R7F0|RBMX_MACFA RNA-binding motif protein, X chromosome OS=Macaca fascicularis
GN=RBMX PE=2 SV=1
Length = 391
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 41/64 (64%)
Query: 9 CNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIK 68
++IG L+ + +E+ L + + GR+V++ + +D+ET+K +GFAFV +ES A A +
Sbjct: 8 GKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAAR 67
Query: 69 LFSG 72
+G
Sbjct: 68 DMNG 71
>sp|O04425|FCA_ARATH Flowering time control protein FCA OS=Arabidopsis thaliana GN=FCA
PE=1 SV=2
Length = 747
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 54/92 (58%), Gaps = 5/92 (5%)
Query: 11 VYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLF 70
+++G+L+++ +E+ + +I +Q G V D+Y+ RD E + +G FV+Y S+E A AI
Sbjct: 213 LFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRD-EYRQSRGCGFVKYSSKETAMAAIDGL 271
Query: 71 SGIVTL--YNRTL--RFALSGQDKNTQNSSMT 98
+G T+ N+ L RFA + K ++ M
Sbjct: 272 NGTYTMRGCNQPLIVRFAEPKRPKPGESREMA 303
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 39/71 (54%)
Query: 6 NSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADY 65
+S +++G++ +E + Q G V+++ + +DK T + +G FV+Y + + AD
Sbjct: 117 SSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADR 176
Query: 66 AIKLFSGIVTL 76
AI+ +TL
Sbjct: 177 AIRALHNQITL 187
>sp|Q9WX37|RBPE_NOSS1 Putative RNA-binding protein RbpE OS=Nostoc sp. (strain PCC 7120
/ UTEX 2576) GN=rbpE PE=3 SV=3
Length = 99
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 36/63 (57%)
Query: 10 NVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKL 69
++Y+GNL V++ L + + G V + +P D+ET + +GF FVE ES D AI+
Sbjct: 2 SIYVGNLSYSVTQDDLTKVFSEYGSVTRVQLPTDRETGRVRGFGFVEMESSAAEDAAIQA 61
Query: 70 FSG 72
G
Sbjct: 62 LDG 64
>sp|Q96E39|RMXL1_HUMAN RNA binding motif protein, X-linked-like-1 OS=Homo sapiens
GN=RBMXL1 PE=1 SV=1
Length = 390
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 41/63 (65%)
Query: 10 NVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKL 69
++IG L+ + +E+ L + + GR+V++ + +D+ET+K +GFAFV +ES A A +
Sbjct: 9 KLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKDAARD 68
Query: 70 FSG 72
+G
Sbjct: 69 MNG 71
>sp|Q5R6W3|RBM18_PONAB Probable RNA-binding protein 18 OS=Pongo abelii GN=RBM18 PE=2 SV=1
Length = 190
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 58/111 (52%), Gaps = 4/111 (3%)
Query: 3 GNSNSGCNVYIGNLDEKVSERVLYDILIQAGRVVD---LYIPRDKETDKPKGFAFVEYES 59
G+ G ++IGNLD K++E L +L + G+V L+ +P+G+ FV +E+
Sbjct: 19 GSLQEGHRLWIGNLDPKITEYHLLKLLQKFGKVKQFDFLFHKSGALEGQPRGYCFVNFET 78
Query: 60 EEIADYAIKLFSGIVTLYNR-TLRFALSGQDKNTQNSSMTTTPLSSRKSRS 109
++ A+ AI+ +G + L + +R+A + + N + P+S S S
Sbjct: 79 KQEAEQAIQCLNGKLALSKKLVVRWAHAQVKRYDHNKNDKILPISLEPSSS 129
>sp|Q9CR83|RBM18_MOUSE Probable RNA-binding protein 18 OS=Mus musculus GN=Rbm18 PE=2 SV=1
Length = 190
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 58/111 (52%), Gaps = 4/111 (3%)
Query: 3 GNSNSGCNVYIGNLDEKVSERVLYDILIQAGRVVD---LYIPRDKETDKPKGFAFVEYES 59
G+ G ++IGNLD K++E L +L + G+V L+ +P+G+ FV +E+
Sbjct: 19 GSLQEGHRLWIGNLDPKITEYHLLKLLQKFGKVKQFDFLFHKSGALEGQPRGYCFVNFET 78
Query: 60 EEIADYAIKLFSGIVTLYNR-TLRFALSGQDKNTQNSSMTTTPLSSRKSRS 109
++ A+ AI+ +G + L + +R+A + + N + P+S S S
Sbjct: 79 KQEAEQAIQCLNGKLALSKKLVVRWAHAQVKRYDHNKNDKILPISLEPSSS 129
>sp|Q96H35|RBM18_HUMAN Probable RNA-binding protein 18 OS=Homo sapiens GN=RBM18 PE=2 SV=1
Length = 190
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 58/111 (52%), Gaps = 4/111 (3%)
Query: 3 GNSNSGCNVYIGNLDEKVSERVLYDILIQAGRVVD---LYIPRDKETDKPKGFAFVEYES 59
G+ G ++IGNLD K++E L +L + G+V L+ +P+G+ FV +E+
Sbjct: 19 GSLQEGHRLWIGNLDPKITEYHLLKLLQKFGKVKQFDFLFHKSGALEGQPRGYCFVNFET 78
Query: 60 EEIADYAIKLFSGIVTLYNR-TLRFALSGQDKNTQNSSMTTTPLSSRKSRS 109
++ A+ AI+ +G + L + +R+A + + N + P+S S S
Sbjct: 79 KQEAEQAIQCLNGKLALSKKLVVRWAHAQVKRYDHNKNDKILPISLEPSSS 129
>sp|Q5RJM0|MK67I_RAT MKI67 FHA domain-interacting nucleolar phosphoprotein OS=Rattus
norvegicus GN=Mki67ip PE=2 SV=1
Length = 271
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 6 NSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIA 63
NSG VY+G+L +SE +YD Q G + + R K T +GFAFVE+ESE++A
Sbjct: 42 NSGV-VYLGHLPSTLSESHIYDYCAQFGDIRRFRLSRSKRTGNSRGFAFVEFESEDVA 98
>sp|Q06A98|SRSF2_PIG Serine/arginine-rich splicing factor 2 OS=Sus scrofa GN=SRSF2
PE=2 SV=1
Length = 221
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 9 CNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIK 68
++ + NL + S L + + GRV D+YIPRD+ T + +GFAFV + + A+ A+
Sbjct: 14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73
Query: 69 LFSGIVTLYNRTLRFALS 86
G V L R LR ++
Sbjct: 74 AMDGAV-LDGRELRVQMA 90
>sp|Q6PDU1|SRSF2_RAT Serine/arginine-rich splicing factor 2 OS=Rattus norvegicus
GN=Srsf2 PE=1 SV=3
Length = 221
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 9 CNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIK 68
++ + NL + S L + + GRV D+YIPRD+ T + +GFAFV + + A+ A+
Sbjct: 14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73
Query: 69 LFSGIVTLYNRTLRFALS 86
G V L R LR ++
Sbjct: 74 AMDGAV-LDGRELRVQMA 90
>sp|Q62093|SRSF2_MOUSE Serine/arginine-rich splicing factor 2 OS=Mus musculus GN=Srsf2
PE=1 SV=4
Length = 221
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 9 CNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIK 68
++ + NL + S L + + GRV D+YIPRD+ T + +GFAFV + + A+ A+
Sbjct: 14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73
Query: 69 LFSGIVTLYNRTLRFALS 86
G V L R LR ++
Sbjct: 74 AMDGAV-LDGRELRVQMA 90
>sp|Q01130|SRSF2_HUMAN Serine/arginine-rich splicing factor 2 OS=Homo sapiens GN=SRSF2
PE=1 SV=4
Length = 221
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 9 CNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIK 68
++ + NL + S L + + GRV D+YIPRD+ T + +GFAFV + + A+ A+
Sbjct: 14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73
Query: 69 LFSGIVTLYNRTLRFALS 86
G V L R LR ++
Sbjct: 74 AMDGAV-LDGRELRVQMA 90
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.131 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,657,858
Number of Sequences: 539616
Number of extensions: 2925400
Number of successful extensions: 7865
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 566
Number of HSP's successfully gapped in prelim test: 217
Number of HSP's that attempted gapping in prelim test: 6776
Number of HSP's gapped (non-prelim): 1204
length of query: 181
length of database: 191,569,459
effective HSP length: 110
effective length of query: 71
effective length of database: 132,211,699
effective search space: 9387030629
effective search space used: 9387030629
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (26.6 bits)