Query 030227
Match_columns 181
No_of_seqs 160 out of 1979
Neff 9.0
Searched_HMMs 29240
Date Mon Mar 25 16:56:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030227.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030227hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1b7f_A Protein (SXL-lethal pro 99.9 7.6E-27 2.6E-31 169.6 11.7 142 7-165 2-158 (168)
2 4f02_A Polyadenylate-binding p 99.9 1E-27 3.5E-32 181.7 7.0 145 4-164 11-169 (213)
3 1fxl_A Paraneoplastic encephal 99.9 8.1E-27 2.8E-31 169.0 11.2 143 7-166 1-158 (167)
4 1l3k_A Heterogeneous nuclear r 99.9 4.1E-26 1.4E-30 169.7 10.6 147 6-164 11-171 (196)
5 3md3_A Nuclear and cytoplasmic 99.9 6.7E-26 2.3E-30 164.0 10.3 141 9-165 1-156 (166)
6 2qfj_A FBP-interacting repress 99.9 2.6E-25 8.9E-30 167.7 10.5 153 7-165 27-194 (216)
7 2cjk_A Nuclear polyadenylated 99.9 7.2E-26 2.5E-30 164.4 5.9 140 7-165 2-155 (167)
8 3nmr_A Cugbp ELAV-like family 99.9 1.4E-25 4.9E-30 163.7 7.4 143 7-165 2-163 (175)
9 3tyt_A Heterogeneous nuclear r 99.9 2E-24 6.9E-29 162.9 12.1 159 6-171 2-198 (205)
10 4fxv_A ELAV-like protein 1; RN 99.9 9.5E-24 3.2E-28 141.7 11.7 82 6-88 17-98 (99)
11 3smz_A Protein raver-1, ribonu 99.9 8.8E-24 3E-28 166.0 12.1 145 6-164 93-252 (284)
12 2yh0_A Splicing factor U2AF 65 99.9 2.4E-23 8.1E-28 155.0 11.8 150 7-164 3-182 (198)
13 2g4b_A Splicing factor U2AF 65 99.9 3E-23 1E-27 151.1 10.3 135 7-165 3-163 (172)
14 1fje_B Nucleolin RBD12, protei 99.9 5.8E-24 2E-28 155.6 6.2 141 4-165 9-163 (175)
15 2lxi_A RNA-binding protein 10; 99.9 5E-23 1.7E-27 136.0 9.3 86 8-93 1-87 (91)
16 3pgw_A U1-A; protein-RNA compl 99.9 2.6E-22 8.9E-27 157.5 15.0 86 1-90 1-91 (282)
17 3s8s_A Histone-lysine N-methyl 99.9 4.5E-22 1.5E-26 136.0 12.2 86 5-91 3-88 (110)
18 2ghp_A U4/U6 snRNA-associated 99.9 2.3E-22 7.7E-27 158.5 11.4 148 7-165 116-280 (292)
19 3sde_A Paraspeckle component 1 99.9 5.6E-23 1.9E-27 160.1 7.7 129 6-163 20-162 (261)
20 3bs9_A Nucleolysin TIA-1 isofo 99.9 7.8E-22 2.7E-26 128.7 11.1 85 4-89 2-86 (87)
21 2adc_A Polypyrimidine tract-bi 99.9 8.1E-22 2.8E-26 150.7 11.9 149 6-164 32-215 (229)
22 1whw_A Hypothetical protein ri 99.9 3E-21 1E-25 129.0 13.1 89 3-92 3-91 (99)
23 4f25_A Polyadenylate-binding p 99.9 1.1E-21 3.8E-26 134.9 11.1 81 8-91 5-85 (115)
24 1qm9_A Polypyrimidine tract-bi 99.9 6.2E-22 2.1E-26 147.7 10.4 147 8-164 3-184 (198)
25 2dgo_A Cytotoxic granule-assoc 99.9 8E-21 2.7E-25 130.3 15.0 88 5-93 12-99 (115)
26 3md1_A Nuclear and cytoplasmic 99.9 2.6E-21 8.8E-26 125.2 11.7 81 8-89 1-81 (83)
27 3smz_A Protein raver-1, ribonu 99.9 4.4E-22 1.5E-26 156.3 9.2 128 7-164 21-163 (284)
28 2lkz_A RNA-binding protein 5; 99.9 4E-22 1.4E-26 132.7 7.4 83 6-88 7-94 (95)
29 2x1f_A MRNA 3'-END-processing 99.9 3.7E-21 1.3E-25 128.0 12.1 84 7-91 1-84 (96)
30 3mdf_A Peptidyl-prolyl CIS-tra 99.9 2.6E-21 9E-26 125.7 10.9 83 4-87 3-85 (85)
31 2cqb_A Peptidyl-prolyl CIS-tra 99.9 2.4E-21 8.3E-26 130.1 10.9 89 4-93 8-96 (102)
32 2div_A TRNA selenocysteine ass 99.9 2.2E-21 7.5E-26 129.7 10.4 88 2-90 3-95 (99)
33 2dnz_A Probable RNA-binding pr 99.9 4.4E-21 1.5E-25 127.2 11.7 87 5-92 2-88 (95)
34 2ghp_A U4/U6 snRNA-associated 99.9 1E-21 3.5E-26 154.8 9.9 133 6-165 39-186 (292)
35 2cq0_A Eukaryotic translation 99.9 4.4E-21 1.5E-25 129.2 11.4 87 5-92 12-98 (103)
36 2cqc_A Arginine/serine-rich sp 99.9 4.9E-21 1.7E-25 126.9 11.5 84 4-88 11-94 (95)
37 1x5t_A Splicing factor 3B subu 99.9 3.7E-21 1.3E-25 127.8 10.8 87 5-92 2-89 (96)
38 2dgs_A DAZ-associated protein 99.9 5.7E-21 2E-25 127.7 11.8 87 4-92 6-92 (99)
39 1x5u_A Splicing factor 3B subu 99.9 5.1E-21 1.7E-25 129.2 11.4 88 4-92 11-98 (105)
40 1x4h_A RNA-binding protein 28; 99.9 8.8E-21 3E-25 129.2 12.4 87 5-92 12-104 (111)
41 1x5s_A Cold-inducible RNA-bind 99.9 3.6E-21 1.2E-25 129.3 10.3 88 4-92 8-95 (102)
42 2cpz_A CUG triplet repeat RNA- 99.9 6.1E-21 2.1E-25 131.0 11.5 86 6-92 23-108 (115)
43 2do4_A Squamous cell carcinoma 99.9 9.6E-21 3.3E-25 126.8 12.1 85 5-91 14-98 (100)
44 2e5h_A Zinc finger CCHC-type a 99.9 7.6E-21 2.6E-25 125.8 11.3 82 5-87 13-94 (94)
45 2cpf_A RNA binding motif prote 99.9 7.3E-21 2.5E-25 126.9 11.2 87 5-92 2-91 (98)
46 2dnm_A SRP46 splicing factor; 99.9 4.8E-21 1.6E-25 129.0 10.0 86 6-92 11-96 (103)
47 2dgx_A KIAA0430 protein; RRM d 99.8 1.7E-20 5.9E-25 124.8 12.4 85 2-90 3-91 (96)
48 3p5t_L Cleavage and polyadenyl 99.8 8.6E-22 2.9E-26 129.7 5.7 82 9-91 2-85 (90)
49 2la6_A RNA-binding protein FUS 99.8 7.1E-21 2.4E-25 127.3 10.2 83 4-87 9-99 (99)
50 3ns6_A Eukaryotic translation 99.8 1.3E-21 4.5E-26 131.3 6.5 83 5-88 3-92 (100)
51 2cph_A RNA binding motif prote 99.8 1.6E-20 5.6E-25 127.0 11.7 88 5-93 12-101 (107)
52 2dgp_A Bruno-like 4, RNA bindi 99.8 9E-21 3.1E-25 128.2 10.4 87 5-92 10-99 (106)
53 1oo0_B CG8781-PA, drosophila Y 99.8 1.1E-20 3.7E-25 128.7 10.9 84 6-90 24-107 (110)
54 4a8x_A RNA-binding protein wit 99.8 1.2E-20 4.2E-25 123.2 10.4 84 6-90 2-86 (88)
55 1p27_B RNA-binding protein 8A; 99.8 7.8E-21 2.7E-25 128.5 9.7 83 6-89 21-103 (106)
56 3s7r_A Heterogeneous nuclear r 99.8 2.3E-20 7.9E-25 121.8 11.6 81 4-86 7-87 (87)
57 2dnh_A Bruno-like 5, RNA bindi 99.8 2E-20 7E-25 126.2 11.8 86 6-93 13-101 (105)
58 2dis_A Unnamed protein product 99.8 2.2E-20 7.5E-25 126.9 12.0 88 4-92 4-95 (109)
59 1u6f_A Tcubp1, RNA-binding pro 99.8 3.4E-20 1.2E-24 131.3 13.3 89 4-93 38-126 (139)
60 2do0_A HnRNP M, heterogeneous 99.8 8E-20 2.7E-24 125.0 14.6 86 5-92 12-97 (114)
61 2cqi_A Nucleolysin TIAR; RNA r 99.8 6.8E-20 2.3E-24 123.3 13.8 86 4-92 11-96 (103)
62 2fy1_A RNA-binding motif prote 99.8 2.7E-20 9.1E-25 128.2 12.1 86 5-92 4-89 (116)
63 3n9u_C Cleavage and polyadenyl 99.8 1.8E-20 6.1E-25 135.6 11.6 81 7-88 54-136 (156)
64 3ucg_A Polyadenylate-binding p 99.8 2.4E-20 8.4E-25 122.0 11.3 81 7-89 5-85 (89)
65 1sjq_A Polypyrimidine tract-bi 99.8 1.7E-20 5.8E-25 126.6 10.7 83 4-92 12-95 (105)
66 2dng_A Eukaryotic translation 99.8 2.6E-20 9.1E-25 125.4 11.3 85 5-92 12-96 (103)
67 2kxn_B Transformer-2 protein h 99.8 8E-21 2.7E-25 133.2 9.0 86 4-90 42-127 (129)
68 2jrs_A RNA-binding protein 39; 99.8 1.4E-20 4.7E-25 128.1 9.8 85 4-89 22-106 (108)
69 3ulh_A THO complex subunit 4; 99.8 3.6E-20 1.2E-24 125.4 11.8 81 5-87 26-106 (107)
70 2cpe_A RNA-binding protein EWS 99.8 2.7E-20 9.3E-25 127.3 11.3 87 5-92 12-106 (113)
71 2dgv_A HnRNP M, heterogeneous 99.8 3.3E-20 1.1E-24 122.2 11.1 85 4-91 4-88 (92)
72 1wi8_A EIF-4B, eukaryotic tran 99.8 3.1E-20 1.1E-24 125.2 11.1 85 5-92 12-97 (104)
73 2dhg_A TRNA selenocysteine ass 99.8 2.7E-20 9.2E-25 125.4 10.7 87 4-92 5-93 (104)
74 2ywk_A Putative RNA-binding pr 99.8 3E-20 1E-24 123.1 10.7 82 5-88 13-94 (95)
75 2cqd_A RNA-binding region cont 99.8 1.3E-19 4.4E-24 124.5 14.2 83 5-89 14-96 (116)
76 2rs2_A Musashi-1, RNA-binding 99.8 3.2E-20 1.1E-24 126.4 10.9 86 4-91 21-106 (109)
77 2d9p_A Polyadenylate-binding p 99.8 3.1E-20 1.1E-24 125.0 10.6 86 5-93 12-97 (103)
78 2khc_A Testis-specific RNP-typ 99.8 1.8E-20 6.2E-25 129.1 9.5 82 5-87 37-118 (118)
79 2cq3_A RNA-binding protein 9; 99.8 1.2E-19 4E-24 122.1 13.0 86 4-92 11-96 (103)
80 2dh8_A DAZ-associated protein 99.8 3.1E-20 1.1E-24 125.3 10.0 86 5-92 13-98 (105)
81 1h2v_Z 20 kDa nuclear CAP bind 99.8 1E-19 3.5E-24 131.3 13.0 86 6-92 37-122 (156)
82 1x4e_A RNA binding motif, sing 99.8 3.7E-21 1.3E-25 125.1 4.5 82 5-87 2-83 (85)
83 3ex7_B RNA-binding protein 8A; 99.8 3.6E-20 1.2E-24 129.0 9.8 86 6-92 20-105 (126)
84 2kn4_A Immunoglobulin G-bindin 99.8 8.7E-20 3E-24 131.7 12.1 86 6-92 68-153 (158)
85 2dgw_A Probable RNA-binding pr 99.8 1.1E-19 3.8E-24 119.5 11.4 83 4-90 6-88 (91)
86 2ek1_A RNA-binding protein 12; 99.8 1.4E-20 4.8E-25 124.8 7.0 82 6-88 13-94 (95)
87 1s79_A Lupus LA protein; RRM, 99.8 2.7E-20 9.1E-25 125.7 8.3 80 6-88 9-88 (103)
88 2kt5_A RNA and export factor-b 99.8 1.5E-19 5.2E-24 125.6 12.2 86 5-92 32-117 (124)
89 2cqp_A RNA-binding protein 12; 99.8 3E-20 1E-24 123.8 8.3 82 6-88 13-94 (98)
90 1p1t_A Cleavage stimulation fa 99.8 3.5E-20 1.2E-24 124.8 8.3 84 7-91 7-90 (104)
91 2cqg_A TDP-43, TAR DNA-binding 99.8 2.8E-19 9.6E-24 120.2 12.7 84 5-91 12-95 (103)
92 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 1.2E-19 4.2E-24 128.2 11.4 81 5-86 60-140 (140)
93 1x4a_A Splicing factor, argini 99.8 2.8E-19 9.7E-24 121.5 12.7 84 5-92 19-102 (109)
94 2mss_A Protein (musashi1); RNA 99.8 2.3E-20 8E-25 118.4 6.7 75 10-86 1-75 (75)
95 2jwn_A Embryonic polyadenylate 99.8 1.6E-19 5.4E-24 125.4 11.2 82 8-91 36-117 (124)
96 3r27_A HnRNP L, heterogeneous 99.8 2E-19 7E-24 120.2 11.1 79 5-89 18-97 (100)
97 2j76_E EIF-4B, EIF4B, eukaryot 99.8 2.6E-20 8.9E-25 124.9 6.6 81 6-89 17-98 (100)
98 2m2b_A RNA-binding protein 10; 99.8 4.2E-20 1.4E-24 129.8 7.9 85 6-91 21-110 (131)
99 2cpi_A CCR4-NOT transcription 99.8 7.7E-20 2.6E-24 124.8 8.9 84 6-90 13-102 (111)
100 1x4d_A Matrin 3; structural ge 99.8 1E-19 3.4E-24 122.5 9.2 82 5-92 12-95 (102)
101 2jvr_A Nucleolar protein 3; RN 99.8 1.7E-19 5.8E-24 123.2 10.0 81 4-89 24-105 (111)
102 2cq4_A RNA binding motif prote 99.8 1.4E-19 4.8E-24 123.9 9.6 80 8-89 25-104 (114)
103 1rk8_A CG8781-PA, CG8781-PA pr 99.8 2.3E-19 7.8E-24 130.7 11.1 85 6-91 70-154 (165)
104 1x4b_A Heterogeneous nuclear r 99.8 2E-19 6.9E-24 123.5 10.2 84 7-92 26-109 (116)
105 2ki2_A SS-DNA binding protein 99.8 1.5E-20 5.2E-25 123.4 4.2 81 9-91 2-82 (90)
106 2dnq_A RNA-binding protein 4B; 99.8 3.8E-19 1.3E-23 116.8 10.9 81 3-92 3-83 (90)
107 2lea_A Serine/arginine-rich sp 99.8 5.2E-20 1.8E-24 130.1 7.2 86 6-92 45-130 (135)
108 2err_A Ataxin-2-binding protei 99.8 2.1E-19 7.3E-24 122.3 10.0 83 4-89 25-107 (109)
109 1uaw_A Mouse-musashi-1; RNP-ty 99.8 3.4E-20 1.2E-24 118.1 5.6 76 9-86 1-76 (77)
110 2nlw_A Eukaryotic translation 99.8 2.2E-19 7.6E-24 121.4 9.8 81 6-89 13-100 (105)
111 2wbr_A GW182, gawky, LD47780P; 99.8 4.6E-19 1.6E-23 115.1 10.7 74 7-87 6-79 (89)
112 2cq1_A PTB-like protein L; RRM 99.8 5.3E-19 1.8E-23 118.8 11.2 80 6-92 13-94 (101)
113 1x4c_A Splicing factor, argini 99.8 1.2E-18 4.2E-23 118.2 13.2 80 6-93 13-97 (108)
114 1wex_A Hypothetical protein (r 99.8 4.3E-19 1.5E-23 119.9 10.8 83 5-93 12-95 (104)
115 1x5o_A RNA binding motif, sing 99.8 3.3E-19 1.1E-23 122.0 10.3 81 6-88 23-111 (114)
116 1why_A Hypothetical protein ri 99.8 4.7E-19 1.6E-23 117.9 10.7 80 5-91 14-95 (97)
117 2fc9_A NCL protein; structure 99.8 6.1E-19 2.1E-23 118.2 11.1 82 5-91 12-93 (101)
118 2cpy_A RNA-binding protein 12; 99.8 1.4E-19 4.7E-24 124.1 8.0 83 5-90 12-95 (114)
119 2ad9_A Polypyrimidine tract-bi 99.8 3.3E-19 1.1E-23 123.0 9.9 82 5-92 28-110 (119)
120 2hgl_A HNRPF protein, heteroge 99.8 1.3E-19 4.4E-24 128.1 7.9 81 5-88 41-124 (136)
121 2a3j_A U1 small nuclear ribonu 99.8 4.6E-19 1.6E-23 123.9 10.5 82 5-90 26-111 (127)
122 1wg5_A Heterogeneous nuclear r 99.8 3.8E-19 1.3E-23 120.0 9.8 81 6-89 13-94 (104)
123 2db1_A Heterogeneous nuclear r 99.8 1.8E-19 6.3E-24 124.3 8.4 80 6-88 15-97 (118)
124 2hvz_A Splicing factor, argini 99.8 5.2E-19 1.8E-23 118.5 10.3 78 9-92 1-78 (101)
125 2dnp_A RNA-binding protein 14; 99.8 1.5E-18 5E-23 113.9 11.9 81 3-92 4-84 (90)
126 1x4g_A Nucleolysin TIAR; struc 99.8 1.6E-18 5.5E-23 117.8 12.3 81 5-92 22-102 (109)
127 1wez_A HnRNP H', FTP-3, hetero 99.8 2.5E-19 8.6E-24 120.6 8.1 82 5-90 12-93 (102)
128 2fc8_A NCL protein; structure 99.8 7.4E-19 2.5E-23 117.9 10.4 84 5-92 12-95 (102)
129 1fj7_A Nucleolin RBD1, protein 99.8 3.3E-20 1.1E-24 124.4 3.5 84 6-92 15-98 (101)
130 3q2s_C Cleavage and polyadenyl 99.8 2.5E-19 8.7E-24 137.1 8.9 81 7-88 67-149 (229)
131 1nu4_A U1A RNA binding domain; 99.8 4.4E-19 1.5E-23 117.9 8.7 82 5-90 5-90 (97)
132 2dgt_A RNA-binding protein 30; 99.8 2.5E-18 8.5E-23 113.3 12.2 80 4-92 6-85 (92)
133 2dgu_A Heterogeneous nuclear r 99.8 4.7E-18 1.6E-22 114.3 13.8 79 6-93 9-87 (103)
134 3lqv_A PRE-mRNA branch site pr 99.8 7E-19 2.4E-23 120.6 9.7 83 4-90 4-86 (115)
135 2krb_A Eukaryotic translation 99.8 1.7E-19 5.7E-24 116.3 6.0 73 8-83 1-80 (81)
136 2cpx_A Hypothetical protein FL 99.8 1.2E-19 4.2E-24 124.3 5.6 84 5-93 22-109 (115)
137 1iqt_A AUF1, heterogeneous nuc 99.8 1.5E-19 5.3E-24 114.5 5.5 75 10-86 1-75 (75)
138 2la4_A Nuclear and cytoplasmic 99.8 5.5E-19 1.9E-23 118.4 8.5 77 5-88 24-100 (101)
139 2lmi_A GRSF-1, G-rich sequence 99.8 1.2E-19 4.2E-24 123.1 5.2 83 3-88 6-91 (107)
140 2ytc_A PRE-mRNA-splicing facto 99.8 2.3E-18 8E-23 111.6 10.7 76 5-87 9-85 (85)
141 2cpj_A Non-POU domain-containi 99.8 1.4E-18 4.7E-23 116.0 9.8 80 6-92 13-92 (99)
142 2jvo_A Nucleolar protein 3; nu 99.8 1.5E-18 5.3E-23 117.9 10.1 78 5-91 28-105 (108)
143 2xnq_A Nuclear polyadenylated 99.8 3.5E-18 1.2E-22 113.9 11.6 76 5-89 19-95 (97)
144 1wel_A RNA-binding protein 12; 99.8 1.2E-19 4E-24 126.2 4.5 82 5-88 22-103 (124)
145 2cqh_A IGF-II mRNA-binding pro 99.8 1.3E-18 4.6E-23 114.8 9.3 82 3-92 3-86 (93)
146 2dnn_A RNA-binding protein 12; 99.8 2E-18 6.7E-23 117.6 9.9 77 8-88 16-92 (109)
147 2e5j_A Methenyltetrahydrofolat 99.8 1.5E-18 5.2E-23 115.5 8.8 79 6-90 17-95 (97)
148 2cpd_A Apobec-1 stimulating pr 99.8 1E-17 3.5E-22 111.8 12.7 77 6-91 13-91 (99)
149 1wf1_A RNA-binding protein RAL 99.8 3.2E-18 1.1E-22 116.4 10.4 78 6-92 25-103 (110)
150 3md3_A Nuclear and cytoplasmic 99.8 5E-18 1.7E-22 122.3 12.0 83 5-88 84-166 (166)
151 2lcw_A RNA-binding protein FUS 99.6 2.8E-20 9.7E-25 127.9 0.0 87 5-92 4-98 (116)
152 2xs2_A Deleted in azoospermia- 99.8 5.5E-19 1.9E-23 118.6 6.3 81 6-90 7-87 (102)
153 2e5g_A U6 snRNA-specific termi 99.8 5.2E-18 1.8E-22 112.2 11.0 80 4-90 4-83 (94)
154 1fjc_A Nucleolin RBD2, protein 99.8 9.7E-19 3.3E-23 116.0 7.3 80 5-90 13-92 (96)
155 2f3j_A RNA and export factor b 99.8 2E-18 6.9E-23 127.2 9.5 82 6-89 86-167 (177)
156 2i2y_A Fusion protein consists 99.8 2.8E-18 9.6E-23 122.9 9.7 79 6-90 71-149 (150)
157 2cq2_A Hypothetical protein LO 99.8 6E-18 2E-22 115.7 10.8 80 4-90 21-107 (114)
158 2hgn_A Heterogeneous nuclear r 99.8 3.4E-19 1.1E-23 126.4 3.9 82 5-90 43-124 (139)
159 3egn_A RNA-binding protein 40; 99.8 7.4E-19 2.5E-23 125.0 5.6 86 5-91 42-132 (143)
160 2hgm_A HNRPF protein, heteroge 99.8 1.7E-18 5.9E-23 120.7 7.3 79 6-88 40-120 (126)
161 1x4f_A Matrin 3; structural ge 99.8 1.3E-18 4.4E-23 118.8 6.4 82 5-92 22-105 (112)
162 2kvi_A Nuclear polyadenylated 99.8 1.9E-18 6.6E-23 114.8 7.0 79 4-91 6-85 (96)
163 2e44_A Insulin-like growth fac 99.7 6.3E-18 2.1E-22 112.1 9.1 79 6-89 13-92 (96)
164 2yh0_A Splicing factor U2AF 65 99.7 1.5E-17 5.1E-22 123.4 12.2 85 6-91 112-196 (198)
165 2g4b_A Splicing factor U2AF 65 99.7 1.3E-17 4.5E-22 121.1 11.3 81 6-87 92-172 (172)
166 2j8a_A Histone-lysine N-methyl 99.7 4.1E-18 1.4E-22 117.8 7.9 79 9-88 3-95 (136)
167 1wg1_A KIAA1579 protein, homol 99.7 6.3E-18 2.2E-22 110.5 8.5 77 6-90 3-79 (88)
168 3pgw_S U1-70K; protein-RNA com 99.7 1.2E-17 4E-22 138.9 12.2 83 6-89 100-182 (437)
169 1whx_A Hypothetical protein ri 99.7 5.3E-18 1.8E-22 115.7 8.1 76 7-89 9-84 (111)
170 2dha_A FLJ20171 protein; RRM d 99.7 3E-18 1E-22 119.1 6.8 80 6-88 21-104 (123)
171 2dnl_A Cytoplasmic polyadenyla 99.7 1E-17 3.6E-22 114.7 9.4 81 4-88 4-87 (114)
172 2qfj_A FBP-interacting repress 99.7 1.6E-17 5.5E-22 124.8 11.2 83 6-89 123-205 (216)
173 1x5p_A Negative elongation fac 99.7 4E-17 1.4E-21 108.5 11.8 79 5-92 12-90 (97)
174 2diu_A KIAA0430 protein; struc 99.7 1.5E-17 5.1E-22 109.0 9.1 78 3-91 3-86 (96)
175 2hzc_A Splicing factor U2AF 65 99.7 1.8E-17 6E-22 107.8 9.2 74 4-85 2-86 (87)
176 3d2w_A TAR DNA-binding protein 99.7 3.6E-17 1.2E-21 107.3 9.9 77 5-90 8-85 (89)
177 1l3k_A Heterogeneous nuclear r 99.7 3.8E-17 1.3E-21 121.0 11.1 85 7-93 103-187 (196)
178 2cjk_A Nuclear polyadenylated 99.7 1.1E-17 3.7E-22 121.0 7.7 81 7-89 86-166 (167)
179 4f02_A Polyadenylate-binding p 99.7 3.7E-17 1.3E-21 123.5 10.8 81 7-90 102-182 (213)
180 3zzy_A Polypyrimidine tract-bi 99.7 6.7E-17 2.3E-21 112.9 11.1 75 9-89 29-106 (130)
181 1sjr_A Polypyrimidine tract-bi 99.7 4.3E-17 1.5E-21 117.9 10.4 77 8-89 46-124 (164)
182 3beg_B Splicing factor, argini 99.7 1.9E-17 6.5E-22 113.6 7.9 75 7-89 15-94 (115)
183 1b7f_A Protein (SXL-lethal pro 99.7 7.4E-17 2.5E-21 116.6 10.5 80 6-86 87-168 (168)
184 2e5i_A Heterogeneous nuclear r 99.7 1.9E-16 6.5E-21 109.9 11.3 77 6-89 21-102 (124)
185 1wf0_A TDP-43, TAR DNA-binding 99.7 3.6E-17 1.2E-21 106.8 7.2 80 5-92 2-81 (88)
186 1fxl_A Paraneoplastic encephal 99.7 1.4E-16 4.7E-21 114.8 10.1 80 6-86 86-167 (167)
187 3nmr_A Cugbp ELAV-like family 99.7 1.3E-16 4.4E-21 115.9 10.0 80 6-87 93-175 (175)
188 2pe8_A Splicing factor 45; RRM 99.7 4.8E-16 1.6E-20 105.0 11.4 83 5-88 5-93 (105)
189 2voo_A Lupus LA protein; RNA-b 99.7 2.5E-16 8.6E-21 117.5 10.8 79 8-89 109-187 (193)
190 2bz2_A Negative elongation fac 99.7 1.5E-16 5.2E-21 110.1 8.6 78 5-91 36-113 (121)
191 1fje_B Nucleolin RBD12, protei 99.7 3.8E-16 1.3E-20 113.8 9.4 78 6-89 97-174 (175)
192 3u1l_A PRE-mRNA-splicing facto 99.6 3.8E-16 1.3E-20 119.7 8.9 77 6-89 132-229 (240)
193 3pgw_A U1-A; protein-RNA compl 99.6 2.3E-15 8E-20 117.7 11.6 76 6-87 205-281 (282)
194 3tyt_A Heterogeneous nuclear r 99.6 2.2E-15 7.5E-20 113.4 8.4 78 6-86 121-204 (205)
195 1jmt_A Splicing factor U2AF 35 99.6 1.6E-15 5.5E-20 102.2 6.1 73 12-86 19-103 (104)
196 2dit_A HIV TAT specific factor 99.6 2.4E-14 8.4E-19 97.5 11.9 80 5-89 12-102 (112)
197 1qm9_A Polypyrimidine tract-bi 99.6 4.4E-15 1.5E-19 110.4 8.8 77 6-88 118-196 (198)
198 2adc_A Polypyrimidine tract-bi 99.6 9E-15 3.1E-19 111.5 10.5 77 6-88 149-227 (229)
199 3v4m_A Splicing factor U2AF 65 99.6 1.5E-14 5E-19 97.7 9.8 82 6-88 3-96 (105)
200 3sde_A Paraspeckle component 1 99.6 1.4E-14 4.7E-19 112.6 10.2 84 6-90 94-180 (261)
201 3ue2_A Poly(U)-binding-splicin 99.5 6.3E-14 2.1E-18 96.4 9.1 82 6-88 18-108 (118)
202 3tht_A Alkylated DNA repair pr 99.5 8.1E-14 2.8E-18 112.1 10.5 77 4-87 14-97 (345)
203 2d9o_A DNAJ (HSP40) homolog, s 99.4 1.6E-12 5.4E-17 86.8 11.1 77 8-92 10-93 (100)
204 3s6e_A RNA-binding protein 39; 99.4 5.3E-12 1.8E-16 86.2 9.8 80 4-88 3-92 (114)
205 2kn4_A Immunoglobulin G-bindin 99.4 4.8E-13 1.6E-17 96.1 4.6 123 37-165 2-139 (158)
206 2dnr_A Synaptojanin-1; RRM dom 99.3 1.7E-11 5.8E-16 79.5 9.9 78 4-91 3-88 (91)
207 1owx_A Lupus LA protein, SS-B, 99.2 4.1E-11 1.4E-15 82.3 7.9 76 6-87 16-94 (121)
208 2i2y_A Fusion protein consists 99.2 3.2E-12 1.1E-16 91.2 2.2 114 46-165 9-137 (150)
209 1ufw_A Synaptojanin 2; RNP dom 99.1 1.2E-10 4.2E-15 75.9 7.2 75 4-88 11-94 (95)
210 3dxb_A Thioredoxin N-terminall 99.0 1.3E-09 4.5E-14 82.3 8.1 69 19-88 140-212 (222)
211 2l9w_A U4/U6 snRNA-associated- 98.5 9.7E-07 3.3E-11 58.8 9.9 73 6-85 19-96 (117)
212 3pgw_S U1-70K; protein-RNA com 98.5 6E-10 2.1E-14 92.5 -8.9 53 112-164 103-170 (437)
213 2lea_A Serine/arginine-rich sp 98.5 5.1E-08 1.7E-12 68.2 2.1 96 52-165 6-116 (135)
214 1rk8_A CG8781-PA, CG8781-PA pr 98.4 3.3E-08 1.1E-12 71.3 -0.9 109 55-164 11-140 (165)
215 2m2b_A RNA-binding protein 10; 98.2 6.3E-07 2.2E-11 62.1 3.6 53 112-164 24-96 (131)
216 3s8s_A Histone-lysine N-methyl 98.2 1.6E-07 5.5E-12 63.3 0.1 53 112-164 7-74 (110)
217 2dnm_A SRP46 splicing factor; 98.2 1.7E-06 5.9E-11 57.1 4.9 54 112-165 14-82 (103)
218 4fxv_A ELAV-like protein 1; RN 98.2 1.1E-07 3.6E-12 63.0 -1.1 54 112-165 20-88 (99)
219 2lxi_A RNA-binding protein 10; 98.2 3.2E-07 1.1E-11 59.6 1.1 52 113-164 3-71 (91)
220 2cqb_A Peptidyl-prolyl CIS-tra 98.2 1.1E-06 3.8E-11 57.8 3.7 53 112-164 13-80 (102)
221 2dgs_A DAZ-associated protein 98.1 1.5E-06 5.1E-11 57.0 3.5 54 112-165 11-78 (99)
222 2dnz_A Probable RNA-binding pr 98.1 8.5E-07 2.9E-11 57.6 2.3 54 112-165 6-74 (95)
223 2lkz_A RNA-binding protein 5; 98.1 8.5E-07 2.9E-11 58.2 2.1 51 112-162 10-77 (95)
224 2mss_A Protein (musashi1); RNA 98.1 7.7E-07 2.6E-11 55.3 1.7 45 121-165 20-67 (75)
225 2dgp_A Bruno-like 4, RNA bindi 98.1 8.7E-07 3E-11 58.8 2.0 52 112-163 14-80 (106)
226 3ns6_A Eukaryotic translation 98.1 2.9E-07 9.8E-12 60.8 -0.7 45 121-165 33-81 (100)
227 2e5h_A Zinc finger CCHC-type a 98.1 2.5E-06 8.4E-11 55.2 3.8 54 112-165 17-85 (94)
228 2ki2_A SS-DNA binding protein 98.1 3.8E-07 1.3E-11 58.8 -0.3 45 121-165 22-69 (90)
229 3p5t_L Cleavage and polyadenyl 98.1 2.2E-07 7.5E-12 60.1 -1.4 45 121-165 22-72 (90)
230 2la6_A RNA-binding protein FUS 98.1 8.2E-07 2.8E-11 58.3 1.3 54 112-165 14-90 (99)
231 1whw_A Hypothetical protein ri 98.1 2.6E-06 9E-11 55.7 3.5 54 112-165 9-77 (99)
232 1x4e_A RNA binding motif, sing 98.1 9.9E-07 3.4E-11 56.1 1.3 54 112-165 6-74 (85)
233 1wg5_A Heterogeneous nuclear r 98.0 4.5E-06 1.5E-10 55.3 4.5 55 112-166 16-84 (104)
234 2khc_A Testis-specific RNP-typ 98.0 5.2E-06 1.8E-10 56.1 4.9 54 112-165 41-109 (118)
235 1x5u_A Splicing factor 3B subu 98.0 2.4E-06 8.1E-11 56.6 2.9 54 112-165 16-84 (105)
236 1x5s_A Cold-inducible RNA-bind 98.0 1.1E-06 3.8E-11 57.8 0.8 54 112-165 13-81 (102)
237 2dh8_A DAZ-associated protein 98.0 4.7E-06 1.6E-10 55.1 3.8 53 112-164 17-83 (105)
238 1s79_A Lupus LA protein; RRM, 98.0 1.3E-06 4.3E-11 58.2 0.8 54 112-165 12-78 (103)
239 2cpz_A CUG triplet repeat RNA- 98.0 1.9E-06 6.4E-11 58.1 1.7 53 112-164 26-93 (115)
240 1x4h_A RNA-binding protein 28; 98.0 6.3E-06 2.1E-10 55.0 3.8 53 112-164 16-89 (111)
241 1x5t_A Splicing factor 3B subu 98.0 3.9E-06 1.3E-10 54.5 2.7 53 112-164 6-74 (96)
242 2kxn_B Transformer-2 protein h 97.9 5E-06 1.7E-10 57.4 3.2 54 112-165 47-115 (129)
243 2cq0_A Eukaryotic translation 97.9 3.3E-06 1.1E-10 55.7 2.2 53 112-164 16-83 (103)
244 2x1f_A MRNA 3'-END-processing 97.9 1.9E-06 6.6E-11 56.1 1.0 53 113-165 4-71 (96)
245 2do4_A Squamous cell carcinoma 97.9 3.1E-06 1.1E-10 55.5 2.0 54 112-165 18-85 (100)
246 2cpe_A RNA-binding protein EWS 97.9 7.6E-06 2.6E-10 54.8 4.0 53 112-164 16-91 (113)
247 2d9p_A Polyadenylate-binding p 97.9 3.8E-06 1.3E-10 55.4 2.3 53 112-165 16-82 (103)
248 1iqt_A AUF1, heterogeneous nuc 97.9 3.1E-06 1E-10 52.4 1.7 45 121-165 20-67 (75)
249 2cph_A RNA binding motif prote 97.9 8.4E-06 2.9E-10 54.0 3.9 54 112-165 16-86 (107)
250 2dhx_A Poly (ADP-ribose) polym 97.9 0.00051 1.8E-08 45.2 12.2 73 5-87 5-82 (104)
251 2dnh_A Bruno-like 5, RNA bindi 97.9 5.6E-06 1.9E-10 54.7 2.9 54 112-165 16-83 (105)
252 1wi8_A EIF-4B, eukaryotic tran 97.9 9.5E-06 3.2E-10 53.6 4.0 52 112-164 16-82 (104)
253 2hgn_A Heterogeneous nuclear r 97.9 4.3E-06 1.5E-10 58.7 2.3 54 112-166 47-113 (139)
254 2ku7_A MLL1 PHD3-CYP33 RRM chi 97.9 8.8E-06 3E-10 56.4 3.9 54 112-165 64-132 (140)
255 3s7r_A Heterogeneous nuclear r 97.9 2.2E-06 7.6E-11 54.7 0.6 53 112-164 12-78 (87)
256 2jrs_A RNA-binding protein 39; 97.9 2.1E-06 7.2E-11 57.4 0.1 54 112-165 27-95 (108)
257 3mdf_A Peptidyl-prolyl CIS-tra 97.9 2E-06 6.9E-11 54.5 0.0 54 112-165 8-76 (85)
258 3md1_A Nuclear and cytoplasmic 97.8 1.3E-06 4.5E-11 55.2 -1.0 44 121-164 22-69 (83)
259 2dhg_A TRNA selenocysteine ass 97.8 4.3E-06 1.5E-10 55.2 1.4 53 112-164 10-78 (104)
260 2dng_A Eukaryotic translation 97.8 6E-06 2.1E-10 54.4 2.0 52 112-164 16-81 (103)
261 1whv_A Poly(A)-specific ribonu 97.8 4.8E-05 1.6E-09 49.5 6.2 56 8-71 15-70 (100)
262 2cq3_A RNA-binding protein 9; 97.8 9.8E-06 3.4E-10 53.3 3.0 52 112-164 16-81 (103)
263 1x5o_A RNA binding motif, sing 97.8 7.7E-06 2.6E-10 54.9 2.5 55 112-166 26-94 (114)
264 1oo0_B CG8781-PA, drosophila Y 97.8 3.7E-06 1.2E-10 56.1 0.8 53 112-164 27-94 (110)
265 3bs9_A Nucleolysin TIA-1 isofo 97.8 1.3E-06 4.4E-11 55.7 -1.4 54 112-165 7-75 (87)
266 1uaw_A Mouse-musashi-1; RNP-ty 97.8 6.6E-06 2.3E-10 51.1 1.9 43 121-164 21-67 (77)
267 2cq4_A RNA binding motif prote 97.8 2.6E-05 8.9E-10 52.3 5.0 54 112-165 26-93 (114)
268 3ex7_B RNA-binding protein 8A; 97.8 5.8E-06 2E-10 56.5 1.7 53 112-164 23-90 (126)
269 2cqc_A Arginine/serine-rich sp 97.8 2.7E-06 9.3E-11 55.1 -0.0 53 112-164 16-83 (95)
270 2cqp_A RNA-binding protein 12; 97.8 4E-06 1.4E-10 54.7 0.8 54 112-165 16-84 (98)
271 2fy1_A RNA-binding motif prote 97.8 5.2E-06 1.8E-10 56.2 1.3 53 112-164 8-74 (116)
272 2dgv_A HnRNP M, heterogeneous 97.8 4E-06 1.4E-10 54.0 0.7 53 112-165 9-75 (92)
273 2dnn_A RNA-binding protein 12; 97.8 1.1E-05 3.8E-10 54.1 2.7 53 112-165 17-82 (109)
274 1uw4_A UPF3X; nonsense mediate 97.8 0.00041 1.4E-08 44.8 10.0 79 9-87 2-86 (91)
275 2cpy_A RNA-binding protein 12; 97.8 1.5E-05 5E-10 53.7 3.3 53 112-164 16-82 (114)
276 2j76_E EIF-4B, EIF4B, eukaryot 97.8 1.3E-05 4.6E-10 52.5 3.0 53 112-165 20-87 (100)
277 2j8a_A Histone-lysine N-methyl 97.8 2.6E-06 8.8E-11 58.9 -0.6 44 121-164 27-84 (136)
278 2div_A TRNA selenocysteine ass 97.8 2.9E-06 1E-10 55.5 -0.4 56 112-167 10-81 (99)
279 1wez_A HnRNP H', FTP-3, hetero 97.8 8.5E-06 2.9E-10 53.9 1.9 54 112-166 16-82 (102)
280 2cqd_A RNA-binding region cont 97.7 1.7E-05 5.8E-10 53.4 3.2 52 112-164 18-84 (116)
281 3n9u_C Cleavage and polyadenyl 97.7 1.8E-06 6E-11 61.8 -1.9 54 112-165 56-126 (156)
282 2lmi_A GRSF-1, G-rich sequence 97.7 2.2E-05 7.6E-10 52.2 3.6 54 112-165 12-81 (107)
283 2kt5_A RNA and export factor-b 97.7 1.9E-05 6.5E-10 53.8 3.3 54 112-165 36-103 (124)
284 1p27_B RNA-binding protein 8A; 97.7 2.5E-06 8.4E-11 56.6 -1.2 54 112-165 24-92 (106)
285 2krb_A Eukaryotic translation 97.7 8.4E-06 2.9E-10 51.3 1.3 45 121-166 28-75 (81)
286 3q2s_C Cleavage and polyadenyl 97.7 4.9E-06 1.7E-10 63.1 0.3 53 112-164 69-138 (229)
287 2cpf_A RNA binding motif prote 97.7 3.1E-06 1.1E-10 55.2 -0.7 53 112-164 6-76 (98)
288 3ucg_A Polyadenylate-binding p 97.7 5.3E-06 1.8E-10 53.0 0.3 45 121-165 27-74 (89)
289 2ek1_A RNA-binding protein 12; 97.7 2.8E-06 9.5E-11 55.1 -1.0 54 112-165 16-84 (95)
290 2rs2_A Musashi-1, RNA-binding 97.7 1E-05 3.4E-10 54.1 1.7 53 112-164 26-92 (109)
291 2dgo_A Cytotoxic granule-assoc 97.7 4.8E-06 1.6E-10 56.0 0.1 53 112-164 16-83 (115)
292 1x4b_A Heterogeneous nuclear r 97.7 1.1E-05 3.8E-10 54.3 1.9 53 112-164 28-94 (116)
293 2hgm_A HNRPF protein, heteroge 97.7 3.8E-05 1.3E-09 52.9 4.6 53 112-165 43-110 (126)
294 1u6f_A Tcubp1, RNA-binding pro 97.7 8.7E-06 3E-10 56.6 1.2 53 112-164 43-110 (139)
295 2jwn_A Embryonic polyadenylate 97.7 4.7E-06 1.6E-10 56.8 -0.3 53 112-164 37-103 (124)
296 2do0_A HnRNP M, heterogeneous 97.7 9.3E-06 3.2E-10 54.4 1.2 53 112-164 16-82 (114)
297 2err_A Ataxin-2-binding protei 97.7 1.5E-05 5.1E-10 53.2 2.2 53 112-165 30-96 (109)
298 1wey_A Calcipressin 1; structu 97.7 0.00028 9.4E-09 46.6 8.1 74 8-88 5-83 (104)
299 2ywk_A Putative RNA-binding pr 97.7 3.9E-06 1.3E-10 54.4 -1.0 54 112-165 17-84 (95)
300 2fc9_A NCL protein; structure 97.7 3.5E-05 1.2E-09 50.4 3.6 50 112-164 16-79 (101)
301 2cqg_A TDP-43, TAR DNA-binding 97.6 1.8E-05 6.2E-10 52.0 2.1 53 112-164 16-86 (103)
302 4f25_A Polyadenylate-binding p 97.6 2.2E-06 7.6E-11 57.9 -2.4 53 112-165 6-72 (115)
303 2db1_A Heterogeneous nuclear r 97.6 1.9E-05 6.5E-10 53.5 2.2 53 112-164 18-86 (118)
304 3ctr_A Poly(A)-specific ribonu 97.6 6.7E-05 2.3E-09 49.0 4.5 53 10-71 8-60 (101)
305 2xs2_A Deleted in azoospermia- 97.6 6.7E-06 2.3E-10 54.1 -0.3 53 112-164 10-79 (102)
306 2lcw_A RNA-binding protein FUS 96.8 7.9E-06 2.7E-10 55.1 0.0 44 121-164 28-83 (116)
307 4a8x_A RNA-binding protein wit 97.6 5E-06 1.7E-10 53.0 -1.0 53 113-165 6-74 (88)
308 3ulh_A THO complex subunit 4; 97.6 5.8E-06 2E-10 54.8 -0.7 54 112-165 30-97 (107)
309 1p1t_A Cleavage stimulation fa 97.6 3.7E-06 1.3E-10 55.4 -1.8 54 112-165 9-77 (104)
310 2cpx_A Hypothetical protein FL 97.6 1.9E-05 6.4E-10 53.0 1.5 53 112-164 26-93 (115)
311 1wel_A RNA-binding protein 12; 97.6 2.3E-05 8E-10 53.4 1.9 55 112-166 26-94 (124)
312 2nlw_A Eukaryotic translation 97.6 2.6E-05 8.8E-10 51.7 2.0 45 121-166 42-89 (105)
313 3d2w_A TAR DNA-binding protein 97.6 3E-05 1E-09 49.9 2.2 47 112-164 12-70 (89)
314 1jmt_A Splicing factor U2AF 35 97.6 8.1E-06 2.8E-10 54.3 -0.6 44 122-165 49-95 (104)
315 2dnl_A Cytoplasmic polyadenyla 97.5 4.1E-05 1.4E-09 51.4 2.7 52 112-164 9-81 (114)
316 2hgl_A HNRPF protein, heteroge 97.5 1.4E-05 4.9E-10 55.8 0.2 54 112-165 45-114 (136)
317 2dgw_A Probable RNA-binding pr 97.5 1.7E-05 5.8E-10 50.9 0.5 53 112-165 11-76 (91)
318 1wf0_A TDP-43, TAR DNA-binding 97.5 8.4E-05 2.9E-09 47.3 3.5 46 112-163 6-63 (88)
319 1x4a_A Splicing factor, argini 97.5 0.00011 3.6E-09 48.8 4.0 51 112-164 23-87 (109)
320 2cqi_A Nucleolysin TIAR; RNA r 97.5 3.9E-05 1.3E-09 50.4 1.8 52 112-164 16-81 (103)
321 2dgx_A KIAA0430 protein; RRM d 97.5 2.1E-05 7.2E-10 51.2 0.3 42 121-164 34-78 (96)
322 1h2v_Z 20 kDa nuclear CAP bind 97.4 1.7E-05 5.9E-10 56.2 -0.3 53 112-164 40-107 (156)
323 2f3j_A RNA and export factor b 97.4 3.8E-05 1.3E-09 55.9 1.4 54 112-165 89-156 (177)
324 2cpi_A CCR4-NOT transcription 97.4 7.5E-05 2.6E-09 49.9 2.8 44 121-164 39-89 (111)
325 2pe8_A Splicing factor 45; RRM 97.4 2.1E-05 7E-10 52.4 -0.1 45 121-165 34-83 (105)
326 2dis_A Unnamed protein product 97.4 3.6E-05 1.2E-09 51.0 1.1 53 112-164 9-80 (109)
327 3v4m_A Splicing factor U2AF 65 97.4 4.4E-05 1.5E-09 50.8 1.3 45 121-165 36-86 (105)
328 2wbr_A GW182, gawky, LD47780P; 97.4 1E-05 3.6E-10 52.1 -1.8 40 121-165 28-70 (89)
329 2a3j_A U1 small nuclear ribonu 97.3 4.1E-05 1.4E-09 52.8 0.5 43 121-165 54-99 (127)
330 2cpj_A Non-POU domain-containi 97.3 0.00017 5.7E-09 47.0 3.4 49 112-165 16-78 (99)
331 2dha_A FLJ20171 protein; RRM d 97.3 2.2E-05 7.4E-10 53.9 -1.3 54 112-165 24-94 (123)
332 1wwh_A Nucleoporin 35, nucleop 97.3 0.0021 7.3E-08 43.4 8.5 71 7-86 23-94 (119)
333 1fj7_A Nucleolin RBD1, protein 97.3 2E-05 6.9E-10 51.6 -1.5 53 112-165 18-84 (101)
334 1x4c_A Splicing factor, argini 97.2 0.00013 4.3E-09 48.5 2.3 48 112-165 16-77 (108)
335 3lqv_A PRE-mRNA branch site pr 97.2 8.5E-05 2.9E-09 49.7 1.2 52 112-165 9-74 (115)
336 2jvr_A Nucleolar protein 3; RN 97.2 5.1E-05 1.7E-09 51.0 -0.3 51 112-165 29-94 (111)
337 2dnq_A RNA-binding protein 4B; 97.2 9.9E-05 3.4E-09 47.2 1.1 46 112-164 9-68 (90)
338 2cq1_A PTB-like protein L; RRM 97.1 0.00031 1.1E-08 46.3 3.1 48 112-164 16-79 (101)
339 2hvz_A Splicing factor, argini 97.1 4.7E-05 1.6E-09 49.8 -1.2 40 121-164 21-63 (101)
340 1sjq_A Polypyrimidine tract-bi 97.1 0.00013 4.6E-09 48.5 0.9 48 112-164 17-80 (105)
341 2l08_A Regulator of nonsense t 97.0 0.0029 9.9E-08 41.2 7.1 81 7-87 8-94 (97)
342 1why_A Hypothetical protein ri 97.0 0.00043 1.5E-08 44.8 2.9 48 112-164 18-79 (97)
343 2fc8_A NCL protein; structure 97.0 0.00026 8.8E-09 46.2 1.7 50 112-164 16-80 (102)
344 2jvo_A Nucleolar protein 3; nu 96.9 0.00023 8E-09 47.3 1.3 46 112-164 32-91 (108)
345 2voo_A Lupus LA protein; RNA-b 96.9 0.0001 3.4E-09 54.3 -0.6 98 59-164 63-175 (193)
346 1x4g_A Nucleolysin TIAR; struc 96.9 0.00017 5.9E-09 47.8 0.6 48 112-164 26-87 (109)
347 3beg_B Splicing factor, argini 96.9 0.00017 5.9E-09 48.5 0.2 48 112-165 17-78 (115)
348 2la4_A Nuclear and cytoplasmic 96.9 0.00029 9.8E-09 45.9 1.1 48 112-164 28-89 (101)
349 2cq2_A Hypothetical protein LO 96.8 0.00019 6.4E-09 48.5 0.2 47 112-163 26-88 (114)
350 1whx_A Hypothetical protein ri 96.8 0.00026 9E-09 47.2 0.9 49 112-165 11-73 (111)
351 1x5p_A Negative elongation fac 96.8 0.00088 3E-08 43.3 3.2 48 112-164 16-75 (97)
352 3egn_A RNA-binding protein 40; 96.7 9E-05 3.1E-09 51.7 -2.2 53 112-164 46-118 (143)
353 3ue2_A Poly(U)-binding-splicin 96.7 9.4E-05 3.2E-09 50.3 -2.1 45 121-165 46-98 (118)
354 2ytc_A PRE-mRNA-splicing facto 96.7 0.00042 1.4E-08 43.5 0.8 49 112-165 13-76 (85)
355 3s6e_A RNA-binding protein 39; 96.6 0.00043 1.5E-08 46.7 0.8 42 121-165 38-82 (114)
356 1wf1_A RNA-binding protein RAL 96.6 0.0021 7.2E-08 42.4 4.2 46 112-164 28-88 (110)
357 2e5j_A Methenyltetrahydrofolat 96.6 0.00044 1.5E-08 44.7 0.7 50 112-165 20-83 (97)
358 2dgt_A RNA-binding protein 30; 96.6 0.0006 2.1E-08 43.6 1.3 46 112-164 11-70 (92)
359 1nu4_A U1A RNA binding domain; 96.6 0.00013 4.4E-09 47.2 -2.0 42 121-164 33-77 (97)
360 1fjc_A Nucleolin RBD2, protein 96.6 0.0002 6.7E-09 46.2 -1.1 49 112-164 17-79 (96)
361 2cpd_A Apobec-1 stimulating pr 96.5 0.0013 4.5E-08 42.6 2.6 46 112-164 16-77 (99)
362 1wex_A Hypothetical protein (r 96.5 0.0017 5.8E-08 42.9 3.2 44 112-160 16-73 (104)
363 2ad9_A Polypyrimidine tract-bi 96.5 0.00065 2.2E-08 46.2 1.2 43 112-159 32-88 (119)
364 2bz2_A Negative elongation fac 96.5 0.0007 2.4E-08 45.9 1.2 48 112-164 40-99 (121)
365 2cqh_A IGF-II mRNA-binding pro 96.5 0.00055 1.9E-08 43.8 0.3 47 112-164 9-71 (93)
366 1x4d_A Matrin 3; structural ge 96.4 0.0024 8.1E-08 42.1 3.1 45 112-161 16-75 (102)
367 2xnq_A Nuclear polyadenylated 96.4 0.00079 2.7E-08 43.7 0.7 46 112-164 23-83 (97)
368 2dnp_A RNA-binding protein 14; 96.3 0.001 3.6E-08 42.2 1.1 46 112-164 10-69 (90)
369 2diu_A KIAA0430 protein; struc 96.3 0.0028 9.6E-08 41.2 3.0 43 113-164 11-72 (96)
370 3r27_A HnRNP L, heterogeneous 96.3 0.00039 1.3E-08 45.8 -1.2 46 112-162 22-81 (100)
371 3pq1_A Poly(A) RNA polymerase; 96.3 0.0024 8.3E-08 53.0 3.3 55 8-68 53-107 (464)
372 1sjr_A Polypyrimidine tract-bi 96.3 0.00055 1.9E-08 49.1 -0.5 51 112-165 47-111 (164)
373 2e5i_A Heterogeneous nuclear r 96.2 0.0025 8.6E-08 43.5 2.6 49 112-165 26-89 (124)
374 1wg1_A KIAA1579 protein, homol 96.2 0.00057 1.9E-08 43.4 -0.7 48 112-165 6-67 (88)
375 2dgu_A Heterogeneous nuclear r 96.0 0.0014 4.8E-08 42.8 0.4 46 112-164 12-71 (103)
376 2d9o_A DNAJ (HSP40) homolog, s 95.9 0.0025 8.5E-08 41.8 1.5 36 121-160 38-76 (100)
377 2dit_A HIV TAT specific factor 95.9 0.0023 7.9E-08 42.5 1.2 42 121-165 47-91 (112)
378 2e5g_A U6 snRNA-specific termi 95.8 0.009 3.1E-07 38.1 3.6 48 112-164 9-70 (94)
379 3zzy_A Polypyrimidine tract-bi 95.7 0.0012 4.1E-08 45.6 -0.9 41 121-165 49-93 (130)
380 3tht_A Alkylated DNA repair pr 95.6 0.0028 9.6E-08 50.8 0.8 39 121-164 41-82 (345)
381 3dxb_A Thioredoxin N-terminall 95.5 0.0026 9E-08 47.3 0.3 46 121-166 150-203 (222)
382 1x4f_A Matrin 3; structural ge 95.5 0.0034 1.2E-07 42.1 0.7 35 121-160 47-84 (112)
383 3p3d_A Nucleoporin 53; structu 95.4 0.045 1.5E-06 37.5 6.2 77 8-87 7-97 (132)
384 2hzc_A Splicing factor U2AF 65 95.1 0.0023 7.8E-08 40.1 -0.9 49 112-165 7-79 (87)
385 2e44_A Insulin-like growth fac 95.1 0.0038 1.3E-07 39.9 0.0 50 112-165 16-81 (96)
386 2kvi_A Nuclear polyadenylated 94.8 0.0059 2E-07 39.2 0.3 37 121-164 32-71 (96)
387 3u1l_A PRE-mRNA-splicing facto 93.3 0.0092 3.1E-07 45.4 -1.1 38 121-163 164-204 (240)
388 3d45_A Poly(A)-specific ribonu 92.7 0.29 9.9E-06 41.1 7.0 55 9-72 441-495 (507)
389 2dnr_A Synaptojanin-1; RRM dom 92.2 0.031 1.1E-06 35.8 0.4 38 121-165 36-75 (91)
390 1ufw_A Synaptojanin 2; RNP dom 85.8 0.063 2.2E-06 34.6 -1.8 39 121-166 45-85 (95)
391 1owx_A Lupus LA protein, SS-B, 72.0 1.8 6.3E-05 29.0 1.8 40 121-165 40-85 (121)
392 2g0c_A ATP-dependent RNA helic 66.8 17 0.00059 21.5 5.7 68 10-87 2-75 (76)
393 2cu1_A Mitogen-activated prote 30.0 1.1E+02 0.0038 19.6 5.1 64 15-88 23-87 (103)
394 3fut_A Dimethyladenosine trans 28.5 59 0.002 24.5 3.9 31 9-40 111-141 (271)
395 3uzu_A Ribosomal RNA small sub 26.9 37 0.0013 25.8 2.5 33 9-41 115-147 (279)
396 3h7h_B Transcription elongatio 26.4 65 0.0022 20.7 3.3 34 34-72 40-73 (106)
397 4eyt_A Telomerase associated p 26.2 1.3E+02 0.0043 19.0 8.2 57 6-70 10-66 (129)
398 3tqs_A Ribosomal RNA small sub 22.7 39 0.0013 25.2 1.9 32 10-41 98-129 (255)
399 3lpe_A Putative transcription 20.1 1.6E+02 0.0056 18.0 6.2 35 34-73 39-73 (92)
No 1
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.94 E-value=7.6e-27 Score=169.57 Aligned_cols=142 Identities=20% Similarity=0.295 Sum_probs=123.3
Q ss_pred CCCeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEEEEEec
Q 030227 7 SGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFALS 86 (181)
Q Consensus 7 ~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i~v~~a 86 (181)
+.++|||+|||+++++++|+++|+.||.|..+.+++++.+|.++|||||+|.+.++|+.|++.|++. .+.|+.|+|.++
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~-~~~g~~l~v~~~ 80 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGI-TVRNKRLKVSYA 80 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTC-EETTEECEEEEC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCC-EeCCcEEEEEec
Confidence 5789999999999999999999999999999999999889999999999999999999999999998 999999999998
Q ss_pred CCCCCCCCCCCccCCCCCCCCCCCCCccccCCcc-----------CCCCCcceecCCCCC-CCCCCCccee-eecCCCch
Q 030227 87 GQDKNTQNSSMTTTPLSSRKSRSDPVPVPVNGME-----------ISHHSMRISEPPPPG-VTHESNGYET-HLNVTNYD 153 (181)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------f~~~g~i~~~~~~~~-~~~~~kG~gf-~f~~~~~~ 153 (181)
.+...... ...+.+.++| |+++|.|..+.++.+ .++.++|||| .|.+.+.+
T Consensus 81 ~~~~~~~~----------------~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A 144 (168)
T 1b7f_A 81 RPGGESIK----------------DTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEA 144 (168)
T ss_dssp CCCSSTTT----------------TCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHH
T ss_pred CCCcccCC----------------CCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHH
Confidence 76433211 1356677776 799999999999998 6899999999 88766544
Q ss_pred -hh-hcccCccccc
Q 030227 154 -YS-RRVFGATLDS 165 (181)
Q Consensus 154 -~a-~~~~g~~~~~ 165 (181)
.| +.++|..++.
T Consensus 145 ~~A~~~l~g~~~~g 158 (168)
T 1b7f_A 145 QEAISALNNVIPEG 158 (168)
T ss_dssp HHHHHHHTTCCCTT
T ss_pred HHHHHHhcCCEecC
Confidence 44 7899998864
No 2
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.94 E-value=1e-27 Score=181.70 Aligned_cols=145 Identities=21% Similarity=0.342 Sum_probs=119.6
Q ss_pred CCCCCCeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEEEE
Q 030227 4 NSNSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRF 83 (181)
Q Consensus 4 ~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i~v 83 (181)
++.+.++|||+|||+++|+++|+++|++||+|.+|+|++++.+++++|||||+|.+.++|+.||+.+|+. .+.|+.|++
T Consensus 11 p~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~-~~~g~~i~~ 89 (213)
T 4f02_A 11 PSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFD-VIKGKPVRI 89 (213)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC-EETTEECEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhh-hcCCccccc
Confidence 4467889999999999999999999999999999999999999999999999999999999999999998 999999999
Q ss_pred EecCCCCCCCCCCCccCCCCCCCCCCCCCccccCCcc-----------CCCCCcceecCCCCCCCCCCCccee-eecCCC
Q 030227 84 ALSGQDKNTQNSSMTTTPLSSRKSRSDPVPVPVNGME-----------ISHHSMRISEPPPPGVTHESNGYET-HLNVTN 151 (181)
Q Consensus 84 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------f~~~g~i~~~~~~~~~~~~~kG~gf-~f~~~~ 151 (181)
.++........ .....+++.+|| |.++|+|..++++.+. +.++|||| .|.+.+
T Consensus 90 ~~~~~~~~~~~--------------~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~-~~~~g~~fV~f~~~~ 154 (213)
T 4f02_A 90 MWSQRDPSLRK--------------SGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NGSKGYGFVHFETQE 154 (213)
T ss_dssp EECCCCTHHHH--------------HCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET-TEEEEEEEEEESSHH
T ss_pred ccccccccccc--------------cccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC-CCCceEEEEEeCCHH
Confidence 99865332211 001256777777 7999999999999874 33799999 776654
Q ss_pred -chhh-hcccCcccc
Q 030227 152 -YDYS-RRVFGATLD 164 (181)
Q Consensus 152 -~~~a-~~~~g~~~~ 164 (181)
++.| ++|||..|+
T Consensus 155 ~a~~Ai~~lng~~~~ 169 (213)
T 4f02_A 155 AAERAIEKMNGMLLN 169 (213)
T ss_dssp HHHHHHHHHTTCEET
T ss_pred HHHHHHHHhCCCEEC
Confidence 4445 789999987
No 3
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.94 E-value=8.1e-27 Score=168.98 Aligned_cols=143 Identities=19% Similarity=0.263 Sum_probs=123.2
Q ss_pred CCCeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEEEEEec
Q 030227 7 SGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFALS 86 (181)
Q Consensus 7 ~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i~v~~a 86 (181)
+.++|||+|||+++++++|+++|+.||.|..+.++.++.+|.++|||||+|.+.++|+.|++.|++. .+.|+.|+|.++
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~-~~~g~~l~v~~~ 79 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGL-RLQTKTIKVSYA 79 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC-EETTEECEEEEC
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCC-ccCCceEEEEec
Confidence 3689999999999999999999999999999999999889999999999999999999999999998 999999999998
Q ss_pred CCCCCCCCCCCccCCCCCCCCCCCCCccccCCcc-----------CCCCCcceecCCCCC-CCCCCCccee-eecCCCch
Q 030227 87 GQDKNTQNSSMTTTPLSSRKSRSDPVPVPVNGME-----------ISHHSMRISEPPPPG-VTHESNGYET-HLNVTNYD 153 (181)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------f~~~g~i~~~~~~~~-~~~~~kG~gf-~f~~~~~~ 153 (181)
.+...... ...+.+.++| |+++|.|..+.++.+ .++.++|||| .|.+.+.+
T Consensus 80 ~~~~~~~~----------------~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A 143 (167)
T 1fxl_A 80 RPSSASIR----------------DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEA 143 (167)
T ss_dssp CCCCGGGT----------------TCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHH
T ss_pred CCCcccCC----------------CCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHH
Confidence 75432211 1256666766 799999999999998 6899999999 88776544
Q ss_pred -hh-hcccCcccccC
Q 030227 154 -YS-RRVFGATLDSI 166 (181)
Q Consensus 154 -~a-~~~~g~~~~~~ 166 (181)
.| +.+||..+...
T Consensus 144 ~~A~~~l~g~~~~g~ 158 (167)
T 1fxl_A 144 EEAIKGLNGQKPSGA 158 (167)
T ss_dssp HHHHHHHTTCCCTTC
T ss_pred HHHHHHhcCCccCCC
Confidence 44 78999988753
No 4
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.93 E-value=4.1e-26 Score=169.71 Aligned_cols=147 Identities=16% Similarity=0.173 Sum_probs=118.8
Q ss_pred CCCCeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEEEEEe
Q 030227 6 NSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFAL 85 (181)
Q Consensus 6 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i~v~~ 85 (181)
.+.++|||+|||+++++++|+++|+.||.|.+|.++.++.+|.++|||||+|.+.++|+.||.. ++. .+.|+.|.|.+
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~-~~~g~~l~v~~ 88 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPH-KVDGRVVEPKR 88 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSC-EETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCC-EECCEEeeeec
Confidence 4578999999999999999999999999999999999998999999999999999999999985 776 99999999999
Q ss_pred cCCCCCCCCCCCccCCCCCCCCCCCCCccccCCcc-----------CCCCCcceecCCCCC-CCCCCCccee-eecCCCc
Q 030227 86 SGQDKNTQNSSMTTTPLSSRKSRSDPVPVPVNGME-----------ISHHSMRISEPPPPG-VTHESNGYET-HLNVTNY 152 (181)
Q Consensus 86 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------f~~~g~i~~~~~~~~-~~~~~kG~gf-~f~~~~~ 152 (181)
+......... ........+.+.+|| |+++|.|..+.++.+ .++.++|||| .|.+.+.
T Consensus 89 ~~~~~~~~~~----------~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~ 158 (196)
T 1l3k_A 89 AVSREDSQRP----------GAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDS 158 (196)
T ss_dssp CCC---------------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHH
T ss_pred ccCccccccc----------ccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHH
Confidence 8664332210 001112467888888 899999999999999 7899999999 8877654
Q ss_pred hh-hhcccCcccc
Q 030227 153 DY-SRRVFGATLD 164 (181)
Q Consensus 153 ~~-a~~~~g~~~~ 164 (181)
+. |.+.+|..|+
T Consensus 159 A~~A~~~~~~~~~ 171 (196)
T 1l3k_A 159 VDKIVIQKYHTVN 171 (196)
T ss_dssp HHHHHHCSCCEET
T ss_pred HHHHHHhCCcEEC
Confidence 44 4433666665
No 5
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.93 E-value=6.7e-26 Score=163.96 Aligned_cols=141 Identities=22% Similarity=0.346 Sum_probs=119.5
Q ss_pred CeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEEEEEecCC
Q 030227 9 CNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFALSGQ 88 (181)
Q Consensus 9 ~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i~v~~a~~ 88 (181)
++|||+|||+++++++|+++|+.||.|.++.++.++ .++++|||||+|.+.++|+.|++.|++. .+.|+.|+|.++.+
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~-~~~g~~i~v~~~~~ 78 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGK-QIENNIVKINWAFQ 78 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTC-EETTEECEEEECCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCC-ccCCCeeEEEEcCC
Confidence 589999999999999999999999999999999986 5789999999999999999999999998 99999999999865
Q ss_pred CCCCCCCCCccCCCCCCCCCCCCCccccCCcc-----------CCCCCcceecCCCCC-CCCCCCccee-eecCCCchhh
Q 030227 89 DKNTQNSSMTTTPLSSRKSRSDPVPVPVNGME-----------ISHHSMRISEPPPPG-VTHESNGYET-HLNVTNYDYS 155 (181)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------f~~~g~i~~~~~~~~-~~~~~kG~gf-~f~~~~~~~a 155 (181)
...... .....+.+.+|| |+++|.|..+.++.+ .++.++|||| .|.+.+.+.+
T Consensus 79 ~~~~~~--------------~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~ 144 (166)
T 3md3_A 79 SQQSSS--------------DDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQN 144 (166)
T ss_dssp CCCCCC--------------TTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHH
T ss_pred CCCCCC--------------CCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHH
Confidence 432211 111367777777 799999999999999 8899999999 8876654444
Q ss_pred --hcccCccccc
Q 030227 156 --RRVFGATLDS 165 (181)
Q Consensus 156 --~~~~g~~~~~ 165 (181)
+.++|..++.
T Consensus 145 A~~~l~g~~~~g 156 (166)
T 3md3_A 145 AMDSMQGQDLNG 156 (166)
T ss_dssp HHHHHTTCEETT
T ss_pred HHHHhCCCccCC
Confidence 7799998863
No 6
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.92 E-value=2.6e-25 Score=167.71 Aligned_cols=153 Identities=19% Similarity=0.213 Sum_probs=120.5
Q ss_pred CCCeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEEEEEec
Q 030227 7 SGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFALS 86 (181)
Q Consensus 7 ~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i~v~~a 86 (181)
+.++|||+|||+++++++|+++|+.||.|..|.+++++.+++++|||||+|.+.++|+.|++.|++. .+.|+.|+|.++
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~-~~~g~~l~v~~~ 105 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSV-MLGGRNIKVGRP 105 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSC-CCC-CCCEEECC
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCC-eeCCeeEEEecC
Confidence 3579999999999999999999999999999999999889999999999999999999999999998 999999999987
Q ss_pred CCCCCCCCCCCccCCCCCCCCCCCCCccccCCcc-----------CCCCCcceecCCCCC-CCCCCCccee-eecCCCc-
Q 030227 87 GQDKNTQNSSMTTTPLSSRKSRSDPVPVPVNGME-----------ISHHSMRISEPPPPG-VTHESNGYET-HLNVTNY- 152 (181)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------f~~~g~i~~~~~~~~-~~~~~kG~gf-~f~~~~~- 152 (181)
.............. ........+.+.+|| |+++|+|..+.++.+ .++.++|||| .|.+.+.
T Consensus 106 ~~~~~~~~~~~~~~-----~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A 180 (216)
T 2qfj_A 106 SNIGQAQPIIDQLA-----EEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSS 180 (216)
T ss_dssp SCCGGGHHHHHHHH-----HHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHH
T ss_pred CCccccchhhhhhh-----cccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHH
Confidence 65432210000000 000111367777777 899999999999999 7899999999 8876644
Q ss_pred hhh-hcccCccccc
Q 030227 153 DYS-RRVFGATLDS 165 (181)
Q Consensus 153 ~~a-~~~~g~~~~~ 165 (181)
..| ..++|..|+.
T Consensus 181 ~~A~~~l~g~~~~g 194 (216)
T 2qfj_A 181 QDAVSSMNLFDLGG 194 (216)
T ss_dssp HHHHHHHTTCBCSS
T ss_pred HHHHHHccCCEeCC
Confidence 444 7799998874
No 7
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.92 E-value=7.2e-26 Score=164.39 Aligned_cols=140 Identities=19% Similarity=0.254 Sum_probs=117.8
Q ss_pred CCCeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEEEEEec
Q 030227 7 SGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFALS 86 (181)
Q Consensus 7 ~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i~v~~a 86 (181)
+.++|||+|||+++++++|+++|+.||.|.++.+++++.+|+++|||||+|.+.++|+.|+.. +. .++|+.|.+.++
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~-~~~g~~i~v~~~ 78 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QH-ILDGKVIDPKRA 78 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CC-EETTEECCCEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--cc-ccCCeEcccccc
Confidence 478999999999999999999999999999999999988999999999999999999999994 44 899999999987
Q ss_pred CCCCCCCCCCCccCCCCCCCCCCCCCccccCCcc-----------CCCCCcceecCCCCC-CCCCCCccee-eecCCCch
Q 030227 87 GQDKNTQNSSMTTTPLSSRKSRSDPVPVPVNGME-----------ISHHSMRISEPPPPG-VTHESNGYET-HLNVTNYD 153 (181)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------f~~~g~i~~~~~~~~-~~~~~kG~gf-~f~~~~~~ 153 (181)
.+...... ...+.+.+|| |+++|.|..+.++.+ .++.++|||| .|.+.+.+
T Consensus 79 ~~~~~~~~----------------~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a 142 (167)
T 2cjk_A 79 IPRDEQDK----------------TGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAV 142 (167)
T ss_dssp CCHHHHHH----------------CEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHH
T ss_pred cchhhccC----------------CCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHH
Confidence 65322110 1256666666 799999999999999 7899999999 88776655
Q ss_pred hh-hcccCccccc
Q 030227 154 YS-RRVFGATLDS 165 (181)
Q Consensus 154 ~a-~~~~g~~~~~ 165 (181)
.+ .+++|..++.
T Consensus 143 ~~A~~~~~~~~~g 155 (167)
T 2cjk_A 143 DRVCQNKFIDFKD 155 (167)
T ss_dssp HHHHHCSEECSSS
T ss_pred HHHHhCCCEEeCC
Confidence 54 5578777763
No 8
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.92 E-value=1.4e-25 Score=163.71 Aligned_cols=143 Identities=15% Similarity=0.227 Sum_probs=118.1
Q ss_pred CCCeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCC--CcceEEEEEeCCHHHHHHHHHHhCCCeeeC---CeEE
Q 030227 7 SGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETD--KPKGFAFVEYESEEIADYAIKLFSGIVTLY---NRTL 81 (181)
Q Consensus 7 ~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~--~~~g~afV~f~~~~~a~~al~~l~g~~~i~---g~~i 81 (181)
+.++|||+|||+++++++|+++|++||.|.++++++++.++ +++|||||+|.+.++|+.|++.|++. .+. ++.+
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~-~~~~~~~~~~ 80 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNM-KVLPGMHHPI 80 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTT-CCCTTCSSCC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCc-EEccCCccce
Confidence 47899999999999999999999999999999999998776 89999999999999999999999997 554 4678
Q ss_pred EEEecCCCCCCCCCCCccCCCCCCCCCCCCCccccCCcc-----------CCCCCcceecCCCCCCCCCCCccee-eecC
Q 030227 82 RFALSGQDKNTQNSSMTTTPLSSRKSRSDPVPVPVNGME-----------ISHHSMRISEPPPPGVTHESNGYET-HLNV 149 (181)
Q Consensus 82 ~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------f~~~g~i~~~~~~~~~~~~~kG~gf-~f~~ 149 (181)
.+.++........ ....+.+.+|| |+++|.|..+.++.+.++.++|||| .|.+
T Consensus 81 ~~~~~~~~~~~~~---------------~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~ 145 (175)
T 3nmr_A 81 QMKPADSEKNNAV---------------EDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTT 145 (175)
T ss_dssp EEEECGGGCCSCG---------------GGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESS
T ss_pred EEccccccccccC---------------CCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECC
Confidence 8877654322110 11357777777 7999999999999997799999999 8877
Q ss_pred CCch-hh-hcccCccccc
Q 030227 150 TNYD-YS-RRVFGATLDS 165 (181)
Q Consensus 150 ~~~~-~a-~~~~g~~~~~ 165 (181)
.+.+ .| ..+||..+..
T Consensus 146 ~~~A~~A~~~l~g~~~~~ 163 (175)
T 3nmr_A 146 RAMAQTAIKAMHQAQTME 163 (175)
T ss_dssp HHHHHHHHHHHTTSCCCT
T ss_pred HHHHHHHHHHhcCCcccC
Confidence 6544 44 8999987764
No 9
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.91 E-value=2e-24 Score=162.93 Aligned_cols=159 Identities=13% Similarity=0.104 Sum_probs=120.4
Q ss_pred CCCCeEEEcCCC-CcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEEEEE
Q 030227 6 NSGCNVYIGNLD-EKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFA 84 (181)
Q Consensus 6 ~~~~~l~V~nLp-~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i~v~ 84 (181)
.++++|||+||| +.+++++|+++|++||.|.+|+++++ .+|||||+|.+.++|+.||+.|||. .+.|+.|+|.
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~-~~~g~~l~v~ 75 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNN-FMFGQKMNVC 75 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTC-EETTEECEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCC-EECCceEEEE
Confidence 358899999999 89999999999999999999999875 3799999999999999999999998 9999999999
Q ss_pred ecCCCCCCCCCC-------C----ccCCCCCCCC---------CCCC-CccccCCcc-----------CCCCCcc--eec
Q 030227 85 LSGQDKNTQNSS-------M----TTTPLSSRKS---------RSDP-VPVPVNGME-----------ISHHSMR--ISE 130 (181)
Q Consensus 85 ~a~~~~~~~~~~-------~----~~~~~~~~~~---------~~~~-~~~~~~~~~-----------f~~~g~i--~~~ 130 (181)
+++.....+... . +......... ...+ ..+++.+|| |+++|.| ..+
T Consensus 76 ~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v 155 (205)
T 3tyt_A 76 VSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSV 155 (205)
T ss_dssp ECSCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEE
T ss_pred EccCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEE
Confidence 987533211100 0 0000000000 0011 457888888 7899998 788
Q ss_pred CCCCCCCCCCCccee-eecCC-Cchhh-hcccCcccccCCCCCC
Q 030227 131 PPPPGVTHESNGYET-HLNVT-NYDYS-RRVFGATLDSISRSRS 171 (181)
Q Consensus 131 ~~~~~~~~~~kG~gf-~f~~~-~~~~a-~~~~g~~~~~~~~~~~ 171 (181)
++..+. +.++|||| +|.+. ++..| ..|||..|+......|
T Consensus 156 ~~~~~~-~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p 198 (205)
T 3tyt_A 156 KVFSGK-SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYP 198 (205)
T ss_dssp EECSCC-SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSC
T ss_pred EEEcCC-CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcc
Confidence 887765 55679999 88775 45555 9999999987765554
No 10
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.91 E-value=9.5e-24 Score=141.69 Aligned_cols=82 Identities=23% Similarity=0.426 Sum_probs=78.8
Q ss_pred CCCCeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEEEEEe
Q 030227 6 NSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFAL 85 (181)
Q Consensus 6 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i~v~~ 85 (181)
..+++|||+|||+++|+++|+++|++||.|.++++++++.+|+++|||||+|.+.++|+.|++.||+. .+.|++|+|.|
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~-~~~gr~l~V~~ 95 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGL-RLQSKTIKVSY 95 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTC-EETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCC-EECCEEEEEEE
Confidence 45789999999999999999999999999999999999999999999999999999999999999998 99999999999
Q ss_pred cCC
Q 030227 86 SGQ 88 (181)
Q Consensus 86 a~~ 88 (181)
|+|
T Consensus 96 AkP 98 (99)
T 4fxv_A 96 ARP 98 (99)
T ss_dssp CCB
T ss_pred eeC
Confidence 965
No 11
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.90 E-value=8.8e-24 Score=166.03 Aligned_cols=145 Identities=16% Similarity=0.203 Sum_probs=122.5
Q ss_pred CCCCeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEEEEEe
Q 030227 6 NSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFAL 85 (181)
Q Consensus 6 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i~v~~ 85 (181)
++.++|||+|||+++++++|+++|+.||.|..+.++.++.+|.++|||||+|.+.++|..|+..|++. .++|+.|+|.+
T Consensus 93 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~-~~~g~~i~v~~ 171 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGK-PLGPRTLYVHW 171 (284)
T ss_dssp CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC-EETTEECEEEE
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCC-EeCCcEEEEEE
Confidence 45789999999999999999999999999999999999889999999999999999999999999998 99999999999
Q ss_pred cCCCCCCCCCCCccCCCCCCCCCCCCCccccCCcc------------CCCCCcceecCCCCCCCCCCCccee-eecCCCc
Q 030227 86 SGQDKNTQNSSMTTTPLSSRKSRSDPVPVPVNGME------------ISHHSMRISEPPPPGVTHESNGYET-HLNVTNY 152 (181)
Q Consensus 86 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------f~~~g~i~~~~~~~~~~~~~kG~gf-~f~~~~~ 152 (181)
+.+...... ......+.+.+|| |+.+|.|..+.++.+.+|.++|||| .|.+.+.
T Consensus 172 a~~~~~~~~-------------~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~ 238 (284)
T 3smz_A 172 TDAGQLTPA-------------LLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEM 238 (284)
T ss_dssp CCGGGCCTT-------------TTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHH
T ss_pred CCCCCCCcc-------------cCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHH
Confidence 876432211 0111245555555 7899999999999998899999999 8877654
Q ss_pred h-hh-hcccCcccc
Q 030227 153 D-YS-RRVFGATLD 164 (181)
Q Consensus 153 ~-~a-~~~~g~~~~ 164 (181)
+ .| ..++|..++
T Consensus 239 A~~A~~~l~g~~~~ 252 (284)
T 3smz_A 239 AEEAQQQADGLSLG 252 (284)
T ss_dssp HHHHHHHHTTCEET
T ss_pred HHHHHHHhCCCccC
Confidence 4 44 889999886
No 12
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.90 E-value=2.4e-23 Score=154.95 Aligned_cols=150 Identities=19% Similarity=0.268 Sum_probs=115.0
Q ss_pred CCCeEEEcCCCCcCcHHHHHHHHHhc----C-------CeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCee
Q 030227 7 SGCNVYIGNLDEKVSERVLYDILIQA----G-------RVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVT 75 (181)
Q Consensus 7 ~~~~l~V~nLp~~~te~~l~~~f~~~----G-------~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~ 75 (181)
..++|||+|||+++++++|+++|+.| | .|..+.+ ++++|||||+|.+.++|+.|| .||+. .
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~-~ 74 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGI-I 74 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTE-E
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCC-E
Confidence 47899999999999999999999999 5 5666655 456799999999999999999 79997 9
Q ss_pred eCCeEEEEEecCCCCCCCCCCCcc---CCCCCCCCC-CCCCccccCCcc-----------CCCCCcceecCCCCC-CCCC
Q 030227 76 LYNRTLRFALSGQDKNTQNSSMTT---TPLSSRKSR-SDPVPVPVNGME-----------ISHHSMRISEPPPPG-VTHE 139 (181)
Q Consensus 76 i~g~~i~v~~a~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~-----------f~~~g~i~~~~~~~~-~~~~ 139 (181)
+.|+.|+|.++............. .+....... .....+.+.+|| |.++|.|..+.++.+ .++.
T Consensus 75 ~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~ 154 (198)
T 2yh0_A 75 FQGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGL 154 (198)
T ss_dssp ETTEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCS
T ss_pred EcCceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCC
Confidence 999999999987653332111000 000011111 122678888888 799999999999999 6999
Q ss_pred CCccee-eecCCCchh-h-hcccCcccc
Q 030227 140 SNGYET-HLNVTNYDY-S-RRVFGATLD 164 (181)
Q Consensus 140 ~kG~gf-~f~~~~~~~-a-~~~~g~~~~ 164 (181)
++|||| .|.+.+.+. | +.++|..++
T Consensus 155 ~~g~afV~f~~~~~a~~A~~~l~g~~~~ 182 (198)
T 2yh0_A 155 SKGYAFCEYVDINVTDQAIAGLNGMQLG 182 (198)
T ss_dssp EEEEEEEEESSSSHHHHHHHHHTTCEET
T ss_pred cceEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 999999 777665544 4 779998887
No 13
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.89 E-value=3e-23 Score=151.13 Aligned_cols=135 Identities=21% Similarity=0.303 Sum_probs=112.1
Q ss_pred CCCeEEEcCCCCcCcHHHHHHHHHhc----C-------CeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCee
Q 030227 7 SGCNVYIGNLDEKVSERVLYDILIQA----G-------RVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVT 75 (181)
Q Consensus 7 ~~~~l~V~nLp~~~te~~l~~~f~~~----G-------~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~ 75 (181)
+.++|||+|||+++++++|+++|++| | .|..+.+.+ ++|||||+|.+.++|+.|+ .||+. .
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~------~~g~afV~f~~~~~A~~A~-~~~~~-~ 74 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ------DKNFAFLEFRSVDETTQAM-AFDGI-I 74 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET------TTTEEEEEESSHHHHHHHG-GGTTC-E
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC------CCCEEEEEeCCHHHHHHHH-HhCCc-E
Confidence 47899999999999999999999999 6 777777643 4799999999999999999 79998 9
Q ss_pred eCCeEEEEEecCCCCCCCCCCCccCCCCCCCCCCCCCccccCCcc-----------CCCCCcceecCCCCC-CCCCCCcc
Q 030227 76 LYNRTLRFALSGQDKNTQNSSMTTTPLSSRKSRSDPVPVPVNGME-----------ISHHSMRISEPPPPG-VTHESNGY 143 (181)
Q Consensus 76 i~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------f~~~g~i~~~~~~~~-~~~~~kG~ 143 (181)
+.|+.|+|.++....... ....+.+.+|| |+++|.|..+.++.+ .++.++||
T Consensus 75 ~~g~~i~v~~~~~~~~~~----------------~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~ 138 (172)
T 2g4b_A 75 FQGQSLKIRRPHDYQPLP----------------GAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGY 138 (172)
T ss_dssp ETTEECEEECCSSCCCCT----------------TTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEE
T ss_pred ecCceeeecCCcccCCCC----------------CCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceE
Confidence 999999999875532211 12366777777 799999999999999 79999999
Q ss_pred ee-eecCCCchh-h-hcccCccccc
Q 030227 144 ET-HLNVTNYDY-S-RRVFGATLDS 165 (181)
Q Consensus 144 gf-~f~~~~~~~-a-~~~~g~~~~~ 165 (181)
|| .|.+.+.+. | +.+||..++.
T Consensus 139 afV~f~~~~~A~~A~~~l~g~~~~g 163 (172)
T 2g4b_A 139 AFCEYVDINVTDQAIAGLNGMQLGD 163 (172)
T ss_dssp EEEEESSTTHHHHHHHHHTTCEETT
T ss_pred EEEEeCCHHHHHHHHHHcCCCEECC
Confidence 99 887766544 4 7799998863
No 14
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.89 E-value=5.8e-24 Score=155.61 Aligned_cols=141 Identities=16% Similarity=0.219 Sum_probs=112.4
Q ss_pred CCCCCCeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEEEE
Q 030227 4 NSNSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRF 83 (181)
Q Consensus 4 ~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i~v 83 (181)
...+.++|||+|||+++++++|+++|..||.+.. .++.+..++.++|||||+|.+.++|+.||+ ||+. .+.|+.|+|
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~-~~~g~~l~v 85 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGL-KVFGNEIKL 85 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGE-EETTEEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHh-cCCC-EeCCeEEEE
Confidence 3466889999999999999999999999997765 334444678899999999999999999995 9997 999999999
Q ss_pred EecCCCCCCCCCCCccCCCCCCCCCCCCCccccCCcc-----------CCCCCcceecCCCCCCCCCCCccee-eecCCC
Q 030227 84 ALSGQDKNTQNSSMTTTPLSSRKSRSDPVPVPVNGME-----------ISHHSMRISEPPPPGVTHESNGYET-HLNVTN 151 (181)
Q Consensus 84 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------f~~~g~i~~~~~~~~~~~~~kG~gf-~f~~~~ 151 (181)
.++.+...... .....+.+.+|| |+++|+|..+ ..++.++|||| .|.+.+
T Consensus 86 ~~~~~~~~~~~--------------~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~~ 147 (175)
T 1fje_B 86 EKPKGRDSKKV--------------RAARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEA 147 (175)
T ss_dssp ECCCCSSCSTT--------------GGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE----CSSSSCCSEEEEECSSHH
T ss_pred ecCCCcccccc--------------ccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe----cCCCCCceEEEEEECCHH
Confidence 99876432211 111467777777 7889988766 67788999999 887665
Q ss_pred chhh--hcccCccccc
Q 030227 152 YDYS--RRVFGATLDS 165 (181)
Q Consensus 152 ~~~a--~~~~g~~~~~ 165 (181)
.+.+ ..++|..++.
T Consensus 148 ~A~~A~~~l~g~~~~g 163 (175)
T 1fje_B 148 DAEKNLEEKQGAEIDG 163 (175)
T ss_dssp HHHHHHHHHTEEEETT
T ss_pred HHHHHHHHhCCCEECC
Confidence 4444 7799988873
No 15
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.89 E-value=5e-23 Score=136.03 Aligned_cols=86 Identities=17% Similarity=0.264 Sum_probs=78.5
Q ss_pred CCeEEEcCCCCcCcHHHHHHHHHhcC-CeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEEEEEec
Q 030227 8 GCNVYIGNLDEKVSERVLYDILIQAG-RVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFALS 86 (181)
Q Consensus 8 ~~~l~V~nLp~~~te~~l~~~f~~~G-~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i~v~~a 86 (181)
+++|||+|||+++|+++|+++|++|| .|.+|++++++.++.++|||||+|.+.++|++||+.+++...++|++|+|.++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 47899999999999999999999999 89999999999999999999999999999999999886544899999999999
Q ss_pred CCCCCCC
Q 030227 87 GQDKNTQ 93 (181)
Q Consensus 87 ~~~~~~~ 93 (181)
.++....
T Consensus 81 ~~~~~~~ 87 (91)
T 2lxi_A 81 DPKPKIN 87 (91)
T ss_dssp CSCCCCS
T ss_pred CCCCCCC
Confidence 8755443
No 16
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.89 E-value=2.6e-22 Score=157.47 Aligned_cols=86 Identities=28% Similarity=0.529 Sum_probs=77.1
Q ss_pred CCC-CCCCCCeEEEcCCCCcCcHHHHH----HHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCee
Q 030227 1 MSG-NSNSGCNVYIGNLDEKVSERVLY----DILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVT 75 (181)
Q Consensus 1 ms~-~~~~~~~l~V~nLp~~~te~~l~----~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~ 75 (181)
|+. ...+.++|||+|||+++++++|+ ++|+.||.|..|.+++ +++++|||||+|.+.++|+.||+.||+. .
T Consensus 1 m~~~~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~-~ 76 (282)
T 3pgw_A 1 MAVPETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGF-P 76 (282)
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCC-e
Confidence 443 34678999999999999999976 8999999999999876 6789999999999999999999999998 9
Q ss_pred eCCeEEEEEecCCCC
Q 030227 76 LYNRTLRFALSGQDK 90 (181)
Q Consensus 76 i~g~~i~v~~a~~~~ 90 (181)
+.|+.|+|.++....
T Consensus 77 ~~g~~l~v~~a~~~~ 91 (282)
T 3pgw_A 77 FYDKPMRIQYAKTDS 91 (282)
T ss_pred eCCcEEEEEEeccCc
Confidence 999999999997644
No 17
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.88 E-value=4.5e-22 Score=135.97 Aligned_cols=86 Identities=21% Similarity=0.188 Sum_probs=81.0
Q ss_pred CCCCCeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEEEEE
Q 030227 5 SNSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFA 84 (181)
Q Consensus 5 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i~v~ 84 (181)
..+.++|||+|||+++++++|+++|++||.|.+|.|+.|+.+++++|||||+|.+.++|++||+.||+. .+.|+.|+|.
T Consensus 3 ~~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~-~~~gr~i~V~ 81 (110)
T 3s8s_A 3 QIPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLT-SVMGNIIHAQ 81 (110)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC-EETTEECEEE
T ss_pred CCCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCC-EECCeEEEEE
Confidence 457899999999999999999999999999999999999999999999999999999999999999998 9999999999
Q ss_pred ecCCCCC
Q 030227 85 LSGQDKN 91 (181)
Q Consensus 85 ~a~~~~~ 91 (181)
++.....
T Consensus 82 ~a~~~~~ 88 (110)
T 3s8s_A 82 LDIKGQQ 88 (110)
T ss_dssp ECSTTHH
T ss_pred ECCCCcH
Confidence 9976443
No 18
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.88 E-value=2.3e-22 Score=158.55 Aligned_cols=148 Identities=14% Similarity=0.237 Sum_probs=111.9
Q ss_pred CCCeEEEcCCCCcCcHHHHHHHHHhcC-CeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEEEEEe
Q 030227 7 SGCNVYIGNLDEKVSERVLYDILIQAG-RVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFAL 85 (181)
Q Consensus 7 ~~~~l~V~nLp~~~te~~l~~~f~~~G-~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i~v~~ 85 (181)
..++|||+|||+.+++++|+++|+.|| .|..+.++.++. +.++|||||+|.+.++|..|+..|++. .+.|+.|.|.+
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~l~v~~ 193 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGL-KIEGYTLVTKV 193 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTC-EETTEECEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCC-EeCCcEEEEEE
Confidence 478999999999999999999999999 999999999864 889999999999999999999999998 99999999999
Q ss_pred cCCCCCCCCCCCccCCCCCCCCCCCCCccccCCcc------------CCCCCcceecCCCCCC--CCCCCccee-eecCC
Q 030227 86 SGQDKNTQNSSMTTTPLSSRKSRSDPVPVPVNGME------------ISHHSMRISEPPPPGV--THESNGYET-HLNVT 150 (181)
Q Consensus 86 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------f~~~g~i~~~~~~~~~--~~~~kG~gf-~f~~~ 150 (181)
+.+....... .........+.+.+|| |+++|.|..+.++.+. ++.++|||| .|.+.
T Consensus 194 a~~~~~~~~~---------~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~ 264 (292)
T 2ghp_A 194 SNPLEKSKRT---------DSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENK 264 (292)
T ss_dssp CCCC------------------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSH
T ss_pred CCCCcccccc---------cccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCH
Confidence 9765433221 0001111355555555 6899999999999994 499999999 88776
Q ss_pred Cchhh-hcccCccccc
Q 030227 151 NYDYS-RRVFGATLDS 165 (181)
Q Consensus 151 ~~~~a-~~~~g~~~~~ 165 (181)
+.+.+ ..+||..|+.
T Consensus 265 ~~A~~A~~l~g~~~~g 280 (292)
T 2ghp_A 265 DSAERALQMNRSLLGN 280 (292)
T ss_dssp HHHHHHGGGTTEEETT
T ss_pred HHHHHHHHhcCCEECC
Confidence 54444 7888888873
No 19
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.88 E-value=5.6e-23 Score=160.12 Aligned_cols=129 Identities=19% Similarity=0.348 Sum_probs=109.5
Q ss_pred CCCCeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEEEEEe
Q 030227 6 NSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFAL 85 (181)
Q Consensus 6 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i~v~~ 85 (181)
.+.++|||+|||+++|+++|+++|+.||.|..|.+.++ +|||||+|.+.++|..|+..||+. .+.|+.|+|.+
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~-~i~g~~l~v~~ 92 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGT-ILKSRPLRIRF 92 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTC-EETTEECEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCc-EECCceeEeee
Confidence 44679999999999999999999999999999998654 689999999999999999999998 99999999999
Q ss_pred cCCCCCCCCCCCccCCCCCCCCCCCCCccccCCcc-----------CCCCCcceecCCCCCCCCCCCccee-eecCCCch
Q 030227 86 SGQDKNTQNSSMTTTPLSSRKSRSDPVPVPVNGME-----------ISHHSMRISEPPPPGVTHESNGYET-HLNVTNYD 153 (181)
Q Consensus 86 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------f~~~g~i~~~~~~~~~~~~~kG~gf-~f~~~~~~ 153 (181)
+.+. ..+.+.+|| |+++|.|..+.++.+.++.++|||| .|.+.+.+
T Consensus 93 a~~~----------------------~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A 150 (261)
T 3sde_A 93 ATHG----------------------AALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPA 150 (261)
T ss_dssp CCCS----------------------SEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHH
T ss_pred cccC----------------------CcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHH
Confidence 8541 145566666 7999999999999999999999999 88766544
Q ss_pred h-h-hcccCccc
Q 030227 154 Y-S-RRVFGATL 163 (181)
Q Consensus 154 ~-a-~~~~g~~~ 163 (181)
. | ..+++..+
T Consensus 151 ~~A~~~l~~~~~ 162 (261)
T 3sde_A 151 RKALERCGDGAF 162 (261)
T ss_dssp HHHHHHHHHSCE
T ss_pred HHHHHHhcCCeE
Confidence 4 4 77744433
No 20
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.87 E-value=7.8e-22 Score=128.71 Aligned_cols=85 Identities=25% Similarity=0.397 Sum_probs=77.0
Q ss_pred CCCCCCeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEEEE
Q 030227 4 NSNSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRF 83 (181)
Q Consensus 4 ~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i~v 83 (181)
+..+.++|||+|||.++++++|+++|++||.|..+.++.++.++.++|||||+|.+.++|+.|++.||+. .++|+.|+|
T Consensus 2 p~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~-~~~g~~l~v 80 (87)
T 3bs9_A 2 PLGSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQ-WLGGRQIRT 80 (87)
T ss_dssp ----CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC-EETTEECEE
T ss_pred CCCCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCC-EECCeEEEE
Confidence 4567889999999999999999999999999999999999889999999999999999999999999998 999999999
Q ss_pred EecCCC
Q 030227 84 ALSGQD 89 (181)
Q Consensus 84 ~~a~~~ 89 (181)
.++.++
T Consensus 81 ~~a~~k 86 (87)
T 3bs9_A 81 NWATRK 86 (87)
T ss_dssp EEEC--
T ss_pred EecCCC
Confidence 999763
No 21
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.87 E-value=8.1e-22 Score=150.72 Aligned_cols=149 Identities=14% Similarity=0.127 Sum_probs=112.7
Q ss_pred CCCCeEEEcCCCC-cCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEEEEE
Q 030227 6 NSGCNVYIGNLDE-KVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFA 84 (181)
Q Consensus 6 ~~~~~l~V~nLp~-~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i~v~ 84 (181)
.++++|||+|||+ ++++++|+++|+.||.|..|.++.++ +|||||+|.+.++|+.|++.||+. .+.|+.|+|.
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~-~~~g~~l~v~ 105 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGH-KLHGKPIRIT 105 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTC-BCSSSBCEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCC-eECCeEEEEE
Confidence 5688999999999 99999999999999999999998874 789999999999999999999998 9999999999
Q ss_pred ecCCCCCCCCCCC---------ccCCCCCCC----------CCCCCCccccCCcc-----------CCCCC-cceecCCC
Q 030227 85 LSGQDKNTQNSSM---------TTTPLSSRK----------SRSDPVPVPVNGME-----------ISHHS-MRISEPPP 133 (181)
Q Consensus 85 ~a~~~~~~~~~~~---------~~~~~~~~~----------~~~~~~~~~~~~~~-----------f~~~g-~i~~~~~~ 133 (181)
++........... +........ ..+....+.+.+|| |.++| +|..+.+.
T Consensus 106 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~ 185 (229)
T 2adc_A 106 LSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFF 185 (229)
T ss_dssp CCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEEC
T ss_pred EecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEE
Confidence 9975421110000 000000000 01112567788888 78999 99888874
Q ss_pred CCCCCCCCccee-eecCCCch-hh-hcccCcccc
Q 030227 134 PGVTHESNGYET-HLNVTNYD-YS-RRVFGATLD 164 (181)
Q Consensus 134 ~~~~~~~kG~gf-~f~~~~~~-~a-~~~~g~~~~ 164 (181)
.+ .+|||| .|.+.+.+ .| +.++|..++
T Consensus 186 ~~----~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 215 (229)
T 2adc_A 186 QK----DRKMALIQMGSVEEAVQALIDLHNHDLG 215 (229)
T ss_dssp SS----STTCEEEEESSHHHHHHHHHHHTTCBSS
T ss_pred EC----CCcEEEEEECCHHHHHHHHHHHCCCccC
Confidence 32 489999 88776544 44 789999886
No 22
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.87 E-value=3e-21 Score=128.99 Aligned_cols=89 Identities=30% Similarity=0.361 Sum_probs=82.7
Q ss_pred CCCCCCCeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEEE
Q 030227 3 GNSNSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLR 82 (181)
Q Consensus 3 ~~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i~ 82 (181)
....+.++|||+|||+++++++|+++|+.||.|..|.++.++.+++++|||||+|.+.++|+.||+.||+. .+.|+.|+
T Consensus 3 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~l~ 81 (99)
T 1whw_A 3 SGSSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQ-VFQGRMLH 81 (99)
T ss_dssp CCCCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTE-ESSSCEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCC-EECCcEEE
Confidence 34567899999999999999999999999999999999999889999999999999999999999999997 99999999
Q ss_pred EEecCCCCCC
Q 030227 83 FALSGQDKNT 92 (181)
Q Consensus 83 v~~a~~~~~~ 92 (181)
|.++.+....
T Consensus 82 V~~a~~~~~~ 91 (99)
T 1whw_A 82 VLPSTIKKEA 91 (99)
T ss_dssp EEECCCCSTT
T ss_pred EEEcCCCccc
Confidence 9999875544
No 23
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.87 E-value=1.1e-21 Score=134.89 Aligned_cols=81 Identities=28% Similarity=0.535 Sum_probs=75.1
Q ss_pred CCeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEEEEEecC
Q 030227 8 GCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFALSG 87 (181)
Q Consensus 8 ~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i~v~~a~ 87 (181)
.++|||+|||+++++++|+++|++||.|.+|+|+.++ +.++|||||+|.+.++|+.||+.||+. .++|+.|+|.++.
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~-~~~g~~i~V~~a~ 81 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGM-LLNDRKVFVGRFK 81 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTC-EETTEECEEEESS
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCC-EECCEEEEEEECC
Confidence 5789999999999999999999999999999999985 558999999999999999999999998 9999999999987
Q ss_pred CCCC
Q 030227 88 QDKN 91 (181)
Q Consensus 88 ~~~~ 91 (181)
+...
T Consensus 82 ~~~~ 85 (115)
T 4f25_A 82 SRKE 85 (115)
T ss_dssp CCCC
T ss_pred Cccc
Confidence 6443
No 24
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.87 E-value=6.2e-22 Score=147.67 Aligned_cols=147 Identities=15% Similarity=0.154 Sum_probs=111.6
Q ss_pred CCeEEEcCCCC-cCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEEEEEec
Q 030227 8 GCNVYIGNLDE-KVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFALS 86 (181)
Q Consensus 8 ~~~l~V~nLp~-~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i~v~~a 86 (181)
+++|||+|||+ ++++++|+++|+.||.|..|.++.++ +|||||+|.+.++|+.|+..||+. .+.|+.|+|.++
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~-~~~g~~l~v~~a 76 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGH-KLHGKPIRITLS 76 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTC-CCSSCCCEEEEC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCC-eecCeEEEEEEe
Confidence 78999999999 99999999999999999999998874 789999999999999999999998 999999999999
Q ss_pred CCCCCCCCCC-----------------CccCCCCCC--CCCCCCCccccCCcc-----------CCCCC-cceecCCCCC
Q 030227 87 GQDKNTQNSS-----------------MTTTPLSSR--KSRSDPVPVPVNGME-----------ISHHS-MRISEPPPPG 135 (181)
Q Consensus 87 ~~~~~~~~~~-----------------~~~~~~~~~--~~~~~~~~~~~~~~~-----------f~~~g-~i~~~~~~~~ 135 (181)
.......... ....+.... ...+....+.+.+|| |.++| .|..+.+..+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~ 156 (198)
T 1qm9_A 77 KHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK 156 (198)
T ss_dssp CCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST
T ss_pred cCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC
Confidence 7642211100 000000000 001112567788888 78889 8988887543
Q ss_pred CCCCCCccee-eecCCCchhh--hcccCcccc
Q 030227 136 VTHESNGYET-HLNVTNYDYS--RRVFGATLD 164 (181)
Q Consensus 136 ~~~~~kG~gf-~f~~~~~~~a--~~~~g~~~~ 164 (181)
.+|||| .|.+.+.+.+ ..++|..++
T Consensus 157 ----~~g~afV~f~~~~~A~~A~~~l~g~~~~ 184 (198)
T 1qm9_A 157 ----DRKMALIQMGSVEEAVQALIDLHNHDLG 184 (198)
T ss_dssp ----TSSCEEEECSSHHHHHHHHHHHTSSCCS
T ss_pred ----CCcEEEEEeCCHHHHHHHHHHhcCCccC
Confidence 389999 8877654444 789999886
No 25
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.87 E-value=8e-21 Score=130.32 Aligned_cols=88 Identities=23% Similarity=0.386 Sum_probs=82.1
Q ss_pred CCCCCeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEEEEE
Q 030227 5 SNSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFA 84 (181)
Q Consensus 5 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i~v~ 84 (181)
..+.++|||+|||+.+++++|+++|+.||.|..|.++.++.++.++|||||+|.+.++|+.||+.||+. .+.|+.|+|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~l~V~ 90 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQ-WLGGRQIRTN 90 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTC-EETTEECEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCC-EECCEEEEEE
Confidence 356889999999999999999999999999999999999889999999999999999999999999998 9999999999
Q ss_pred ecCCCCCCC
Q 030227 85 LSGQDKNTQ 93 (181)
Q Consensus 85 ~a~~~~~~~ 93 (181)
++.+.....
T Consensus 91 ~a~~~~~~~ 99 (115)
T 2dgo_A 91 WATRKPPAP 99 (115)
T ss_dssp ESSCCCCCS
T ss_pred EccCCCCCC
Confidence 998765544
No 26
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.87 E-value=2.6e-21 Score=125.15 Aligned_cols=81 Identities=22% Similarity=0.394 Sum_probs=77.5
Q ss_pred CCeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEEEEEecC
Q 030227 8 GCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFALSG 87 (181)
Q Consensus 8 ~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i~v~~a~ 87 (181)
+.+|||+|||+++++++|+++|+.||.|..+.++.++.++.++|||||+|.+.++|+.|++.||+. .++|+.|+|.++.
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~-~~~g~~l~v~~a~ 79 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQ-DLNGRPLRINWAA 79 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTC-EETTEECEEEECC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCC-eeCCcEEEEEecC
Confidence 468999999999999999999999999999999999889999999999999999999999999998 9999999999997
Q ss_pred CC
Q 030227 88 QD 89 (181)
Q Consensus 88 ~~ 89 (181)
+.
T Consensus 80 ~~ 81 (83)
T 3md1_A 80 KL 81 (83)
T ss_dssp CC
T ss_pred cC
Confidence 64
No 27
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.86 E-value=4.4e-22 Score=156.29 Aligned_cols=128 Identities=23% Similarity=0.230 Sum_probs=110.5
Q ss_pred CCCeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEEEEEec
Q 030227 7 SGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFALS 86 (181)
Q Consensus 7 ~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i~v~~a 86 (181)
+.++|||+|||+++++++|+++|+.|| |..+.+ ++++|||||+|.+.++|+.|+..||+. .+.|+.|+|.++
T Consensus 21 ~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~------~~~~g~afV~f~~~~~A~~A~~~l~~~-~~~g~~i~v~~~ 92 (284)
T 3smz_A 21 NRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV------DKYKGTAFVTLLNGEQAEAAINAFHQS-RLRERELSVQLQ 92 (284)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE------ETTTTEEEEEESSHHHHHHHHHHHTTC-EETTEECEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE------ecCCCEEEEEeCCHHHHHHHHHHcCCC-eeCCeEEEEEec
Confidence 578999999999999999999999999 999887 457799999999999999999999998 999999999985
Q ss_pred CCCCCCCCCCCccCCCCCCCCCCCCCccccCCcc-----------CCCCCcceecCCCCC-CCCCCCccee-eecCCCch
Q 030227 87 GQDKNTQNSSMTTTPLSSRKSRSDPVPVPVNGME-----------ISHHSMRISEPPPPG-VTHESNGYET-HLNVTNYD 153 (181)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------f~~~g~i~~~~~~~~-~~~~~kG~gf-~f~~~~~~ 153 (181)
... ..+.+.+|| |+++|.|..+.++.+ .++.++|||| .|.+.+.+
T Consensus 93 ~~~----------------------~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a 150 (284)
T 3smz_A 93 PTD----------------------ALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSA 150 (284)
T ss_dssp CCS----------------------CEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHH
T ss_pred CCC----------------------CEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHH
Confidence 321 246666666 789999999999988 7999999999 88766544
Q ss_pred hh--hcccCcccc
Q 030227 154 YS--RRVFGATLD 164 (181)
Q Consensus 154 ~a--~~~~g~~~~ 164 (181)
.+ ..++|..++
T Consensus 151 ~~A~~~l~~~~~~ 163 (284)
T 3smz_A 151 ARAKSDLLGKPLG 163 (284)
T ss_dssp HHHHHHHTTCEET
T ss_pred HHHHHHhCCCEeC
Confidence 44 689998887
No 28
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.86 E-value=4e-22 Score=132.73 Aligned_cols=83 Identities=17% Similarity=0.303 Sum_probs=76.4
Q ss_pred CCCCeEEEcCCCCcCcHHHHHHHHHhcCC--eEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCC---eeeCCeE
Q 030227 6 NSGCNVYIGNLDEKVSERVLYDILIQAGR--VVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGI---VTLYNRT 80 (181)
Q Consensus 6 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~--i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~---~~i~g~~ 80 (181)
..-.+|||+|||+++|+++|+++|++||. +.+|++++|+.+|+++|||||+|.+.++|++||+.||+. +.++|++
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~ 86 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKT 86 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEE
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEE
Confidence 44678999999999999999999999995 678999999999999999999999999999999999985 3599999
Q ss_pred EEEEecCC
Q 030227 81 LRFALSGQ 88 (181)
Q Consensus 81 i~v~~a~~ 88 (181)
|+|.||+.
T Consensus 87 i~V~~Aks 94 (95)
T 2lkz_A 87 IGVDFAKS 94 (95)
T ss_dssp EEEEECCC
T ss_pred EEEEEccC
Confidence 99999864
No 29
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.86 E-value=3.7e-21 Score=127.96 Aligned_cols=84 Identities=26% Similarity=0.449 Sum_probs=79.7
Q ss_pred CCCeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEEEEEec
Q 030227 7 SGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFALS 86 (181)
Q Consensus 7 ~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i~v~~a 86 (181)
|+++|||+|||.++++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|+.|++.||+. .++|+.|+|.++
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~-~~~g~~l~V~~a 79 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGY-QLGSRFLKCGYS 79 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTC-EETTEECEEEEC
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCC-eECCeEEEEEEc
Confidence 5789999999999999999999999999999999999889999999999999999999999999998 999999999999
Q ss_pred CCCCC
Q 030227 87 GQDKN 91 (181)
Q Consensus 87 ~~~~~ 91 (181)
.+...
T Consensus 80 ~~~~~ 84 (96)
T 2x1f_A 80 SNSDI 84 (96)
T ss_dssp SCSSG
T ss_pred CCCCC
Confidence 77543
No 30
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.86 E-value=2.6e-21 Score=125.65 Aligned_cols=83 Identities=39% Similarity=0.600 Sum_probs=78.7
Q ss_pred CCCCCCeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEEEE
Q 030227 4 NSNSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRF 83 (181)
Q Consensus 4 ~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i~v 83 (181)
...+.++|||+|||+++++++|+++|++||.|..+.++.++.+++++|||||+|.+.++|+.|++.||+. .+.|+.|+|
T Consensus 3 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~l~v 81 (85)
T 3mdf_A 3 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNES-ELFGRTIRV 81 (85)
T ss_dssp CCCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTC-EETTEECEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCC-EECCcEEEE
Confidence 3467899999999999999999999999999999999999889999999999999999999999999998 999999999
Q ss_pred EecC
Q 030227 84 ALSG 87 (181)
Q Consensus 84 ~~a~ 87 (181)
.+++
T Consensus 82 ~~ak 85 (85)
T 3mdf_A 82 NLAK 85 (85)
T ss_dssp EECC
T ss_pred EEcC
Confidence 9974
No 31
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=2.4e-21 Score=130.13 Aligned_cols=89 Identities=36% Similarity=0.554 Sum_probs=82.6
Q ss_pred CCCCCCeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEEEE
Q 030227 4 NSNSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRF 83 (181)
Q Consensus 4 ~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i~v 83 (181)
...+.++|||+|||+++++++|+++|+.||.|..|.++.++.++.++|||||+|.+.++|+.||+.||+. .+.|+.|+|
T Consensus 8 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~-~~~g~~l~V 86 (102)
T 2cqb_A 8 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNES-ELFGRTIRV 86 (102)
T ss_dssp SCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTE-EETTEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCC-EECCcEEEE
Confidence 3467899999999999999999999999999999999999889999999999999999999999999997 999999999
Q ss_pred EecCCCCCCC
Q 030227 84 ALSGQDKNTQ 93 (181)
Q Consensus 84 ~~a~~~~~~~ 93 (181)
.++.+.....
T Consensus 87 ~~a~~~~~~~ 96 (102)
T 2cqb_A 87 NLAKPMRIKE 96 (102)
T ss_dssp EECCCCCCCC
T ss_pred EeCCCCCCCC
Confidence 9998755443
No 32
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=2.2e-21 Score=129.66 Aligned_cols=88 Identities=23% Similarity=0.433 Sum_probs=82.2
Q ss_pred CCCCCCCCeEEEcCCCCcCcHHHHHHHHHhcCCeE-EEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeE
Q 030227 2 SGNSNSGCNVYIGNLDEKVSERVLYDILIQAGRVV-DLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRT 80 (181)
Q Consensus 2 s~~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~-~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~ 80 (181)
|....+.++|||+|||+++++++|+++|++||.|. .+.++.++.+++++|||||+|.+.++|+.|++.||+. .+.|+.
T Consensus 3 s~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~ 81 (99)
T 2div_A 3 SGSSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGK-PLPGAT 81 (99)
T ss_dssp CCCCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTS-EESSCS
T ss_pred CCCCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCC-ccCCCC
Confidence 34567899999999999999999999999999999 9999999989999999999999999999999999998 999998
Q ss_pred ----EEEEecCCCC
Q 030227 81 ----LRFALSGQDK 90 (181)
Q Consensus 81 ----i~v~~a~~~~ 90 (181)
|+|.|+.+..
T Consensus 82 ~~~~l~v~~a~~~~ 95 (99)
T 2div_A 82 PAKRFKLNYATYSG 95 (99)
T ss_dssp SCEECCEEETTCCS
T ss_pred cceeEEEeecCCCC
Confidence 9999997743
No 33
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=4.4e-21 Score=127.21 Aligned_cols=87 Identities=23% Similarity=0.495 Sum_probs=81.4
Q ss_pred CCCCCeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEEEEE
Q 030227 5 SNSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFA 84 (181)
Q Consensus 5 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i~v~ 84 (181)
+.+.++|||+|||+++++++|+++|++||.|..+.++.++.+++++|||||+|.+.++|+.|++.||+. .+.|+.|+|.
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~l~V~ 80 (95)
T 2dnz_A 2 SSGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGF-ELAGRPMRVG 80 (95)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTC-CSSSSCCEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCC-eeCCcEEEEE
Confidence 456899999999999999999999999999999999999889999999999999999999999999998 9999999999
Q ss_pred ecCCCCCC
Q 030227 85 LSGQDKNT 92 (181)
Q Consensus 85 ~a~~~~~~ 92 (181)
++.+....
T Consensus 81 ~a~~~~~~ 88 (95)
T 2dnz_A 81 HVTERLDG 88 (95)
T ss_dssp ESSCCCCC
T ss_pred EcccccCC
Confidence 99775443
No 34
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.86 E-value=1e-21 Score=154.79 Aligned_cols=133 Identities=12% Similarity=0.141 Sum_probs=106.1
Q ss_pred CCCCeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEEEEEe
Q 030227 6 NSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFAL 85 (181)
Q Consensus 6 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i~v~~ 85 (181)
.+.++|||+|||+++++++|+++|+.||.|..|.++.++. .++|||||+|.+.++|+.||+ +++. .+.|+.|.|.+
T Consensus 39 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~A~~A~~-~~~~-~~~g~~i~v~~ 114 (292)
T 2ghp_A 39 RELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLK--KNFRFARIEFARYDGALAAIT-KTHK-VVGQNEIIVSH 114 (292)
T ss_dssp ---CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTT--SSSEEEEEEESSHHHHHHHHT-TTTC-EETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC--CCcEEEEEEECCHHHHHHHHH-hCCc-EeCCcEEEEEE
Confidence 4588999999999999999999999999999999999863 258999999999999999996 9998 99999999998
Q ss_pred cCCCCCCCCCCCccCCCCCCCCCCCCCccccCCcc-----------CCCCC-cceecCCCCCCCCCCCccee-eecCCCc
Q 030227 86 SGQDKNTQNSSMTTTPLSSRKSRSDPVPVPVNGME-----------ISHHS-MRISEPPPPGVTHESNGYET-HLNVTNY 152 (181)
Q Consensus 86 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------f~~~g-~i~~~~~~~~~~~~~kG~gf-~f~~~~~ 152 (181)
+. ...+.+.+|| |.++| +|..+.++.+..+.++|||| .|.+.+.
T Consensus 115 ~~-----------------------~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~ 171 (292)
T 2ghp_A 115 LT-----------------------ECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKED 171 (292)
T ss_dssp CC-----------------------SCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHH
T ss_pred CC-----------------------CCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHH
Confidence 62 1256666666 79999 99999999996688999999 8876654
Q ss_pred hhh--hcccCccccc
Q 030227 153 DYS--RRVFGATLDS 165 (181)
Q Consensus 153 ~~a--~~~~g~~~~~ 165 (181)
+.. ..++|..+..
T Consensus 172 a~~A~~~l~g~~~~g 186 (292)
T 2ghp_A 172 ARYCVEKLNGLKIEG 186 (292)
T ss_dssp HHHHHHHHTTCEETT
T ss_pred HHHHHHHhCCCEeCC
Confidence 444 6699988873
No 35
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=4.4e-21 Score=129.15 Aligned_cols=87 Identities=26% Similarity=0.437 Sum_probs=81.5
Q ss_pred CCCCCeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEEEEE
Q 030227 5 SNSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFA 84 (181)
Q Consensus 5 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i~v~ 84 (181)
..+.++|||+|||+++++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|+.||..||+. .+.|+.|+|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~-~~~g~~l~v~ 90 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGF-GYDHLILNVE 90 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTC-EETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCC-eeCCcEEEEE
Confidence 356889999999999999999999999999999999999889999999999999999999999999998 9999999999
Q ss_pred ecCCCCCC
Q 030227 85 LSGQDKNT 92 (181)
Q Consensus 85 ~a~~~~~~ 92 (181)
++.+....
T Consensus 91 ~a~~~~~~ 98 (103)
T 2cq0_A 91 WAKPSTNS 98 (103)
T ss_dssp ESSCCCCS
T ss_pred ECCCCCCC
Confidence 99875444
No 36
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=4.9e-21 Score=126.87 Aligned_cols=84 Identities=26% Similarity=0.416 Sum_probs=79.4
Q ss_pred CCCCCCeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEEEE
Q 030227 4 NSNSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRF 83 (181)
Q Consensus 4 ~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i~v 83 (181)
+..+.++|||+|||+++++++|+++|+.||.|..+.++.++.+++++|||||+|.+.++|+.|++.||+. .+.|+.|+|
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~-~~~g~~l~v 89 (95)
T 2cqc_A 11 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGM-ELDGRRIRV 89 (95)
T ss_dssp SCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTE-EETTEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCC-EECCEEEEE
Confidence 3466889999999999999999999999999999999999889999999999999999999999999997 999999999
Q ss_pred EecCC
Q 030227 84 ALSGQ 88 (181)
Q Consensus 84 ~~a~~ 88 (181)
.+++.
T Consensus 90 ~~a~~ 94 (95)
T 2cqc_A 90 SGPSS 94 (95)
T ss_dssp ECCSC
T ss_pred EecCC
Confidence 99864
No 37
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=3.7e-21 Score=127.81 Aligned_cols=87 Identities=31% Similarity=0.575 Sum_probs=81.1
Q ss_pred CCCCCeEEEcCCCCcCcHHHHHHHHHhcCCeEEE-EEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEEEE
Q 030227 5 SNSGCNVYIGNLDEKVSERVLYDILIQAGRVVDL-YIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRF 83 (181)
Q Consensus 5 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~-~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i~v 83 (181)
+.++++|||+|||+++++++|+++|+.||.|..+ +++.++.++.++|||||+|.+.++|+.|++.||+. .+.|+.|+|
T Consensus 2 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~-~~~g~~l~v 80 (96)
T 1x5t_A 2 SSGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQ-YLCNRPITV 80 (96)
T ss_dssp CSCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTC-EETTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCC-EECCEEEEE
Confidence 3468999999999999999999999999999999 99999889999999999999999999999999998 999999999
Q ss_pred EecCCCCCC
Q 030227 84 ALSGQDKNT 92 (181)
Q Consensus 84 ~~a~~~~~~ 92 (181)
.++.+....
T Consensus 81 ~~a~~~~~~ 89 (96)
T 1x5t_A 81 SYAFKKDSK 89 (96)
T ss_dssp EESCCCCCC
T ss_pred EEecccCCC
Confidence 999875443
No 38
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=5.7e-21 Score=127.69 Aligned_cols=87 Identities=17% Similarity=0.411 Sum_probs=80.9
Q ss_pred CCCCCCeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEEEE
Q 030227 4 NSNSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRF 83 (181)
Q Consensus 4 ~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i~v 83 (181)
...+.++|||+|||+++++++|+++|++||.|..|.++.++.+++++|||||+|.+.++|+.||+ ||+. .+.|+.|+|
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~-~~~g~~l~V 83 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFH-DIMGKKVEV 83 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCC-BSSSCBCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCC-EECCeEEEE
Confidence 34678999999999999999999999999999999999998899999999999999999999999 9998 999999999
Q ss_pred EecCCCCCC
Q 030227 84 ALSGQDKNT 92 (181)
Q Consensus 84 ~~a~~~~~~ 92 (181)
.++.+....
T Consensus 84 ~~a~~~~~~ 92 (99)
T 2dgs_A 84 KRAEPRDSK 92 (99)
T ss_dssp EECCCCCCC
T ss_pred EECCCCccc
Confidence 999875444
No 39
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=5.1e-21 Score=129.22 Aligned_cols=88 Identities=42% Similarity=0.751 Sum_probs=82.1
Q ss_pred CCCCCCeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEEEE
Q 030227 4 NSNSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRF 83 (181)
Q Consensus 4 ~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i~v 83 (181)
...+.++|||+|||+++++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|+.||+.||+. .+.|+.|+|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~l~v 89 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMI-KLYGKPIRV 89 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSC-BCSSCBCEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCC-eECCeEEEE
Confidence 3466899999999999999999999999999999999999889999999999999999999999999998 999999999
Q ss_pred EecCCCCCC
Q 030227 84 ALSGQDKNT 92 (181)
Q Consensus 84 ~~a~~~~~~ 92 (181)
.++.+....
T Consensus 90 ~~a~~~~~~ 98 (105)
T 1x5u_A 90 NKASAHNKN 98 (105)
T ss_dssp EETTTTSCC
T ss_pred EECCCCCcC
Confidence 999875544
No 40
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=8.8e-21 Score=129.20 Aligned_cols=87 Identities=26% Similarity=0.389 Sum_probs=81.2
Q ss_pred CCCCCeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhC------CCeeeCC
Q 030227 5 SNSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFS------GIVTLYN 78 (181)
Q Consensus 5 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~------g~~~i~g 78 (181)
..+.++|||+|||+++++++|+++|..||.|..|.++.++.++.++|||||+|.+.++|+.||..|| +. .++|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~-~~~g 90 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGL-KLDG 90 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCE-ESSS
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCc-EEcC
Confidence 4568899999999999999999999999999999999999999999999999999999999999999 86 9999
Q ss_pred eEEEEEecCCCCCC
Q 030227 79 RTLRFALSGQDKNT 92 (181)
Q Consensus 79 ~~i~v~~a~~~~~~ 92 (181)
+.|+|.++.+....
T Consensus 91 ~~l~v~~a~~~~~~ 104 (111)
T 1x4h_A 91 RQLKVDLAVTRDEA 104 (111)
T ss_dssp CEEEEECCCCCCCC
T ss_pred EEEEEEECCCCccC
Confidence 99999999775443
No 41
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=3.6e-21 Score=129.32 Aligned_cols=88 Identities=22% Similarity=0.484 Sum_probs=81.9
Q ss_pred CCCCCCeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEEEE
Q 030227 4 NSNSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRF 83 (181)
Q Consensus 4 ~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i~v 83 (181)
...+.++|||+|||+++++++|+++|++||.|..+.++.++.++.++|||||+|.+.++|+.||+.||+. .+.|+.|+|
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~-~~~g~~l~v 86 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGK-SVDGRQIRV 86 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTC-CTTSCCCEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCC-EECCeEEEE
Confidence 4567899999999999999999999999999999999999889999999999999999999999999998 999999999
Q ss_pred EecCCCCCC
Q 030227 84 ALSGQDKNT 92 (181)
Q Consensus 84 ~~a~~~~~~ 92 (181)
.++.+....
T Consensus 87 ~~a~~~~~~ 95 (102)
T 1x5s_A 87 DQAGKSSDN 95 (102)
T ss_dssp EEEECCCCC
T ss_pred EECCCCCCC
Confidence 999775443
No 42
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.85 E-value=6.1e-21 Score=130.98 Aligned_cols=86 Identities=26% Similarity=0.441 Sum_probs=80.7
Q ss_pred CCCCeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEEEEEe
Q 030227 6 NSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFAL 85 (181)
Q Consensus 6 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i~v~~ 85 (181)
.+.++|||+|||+++++++|+++|+.||.|..|.++.++.+++++|||||+|.+.++|+.||+.||+. .+.|+.|+|.+
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~l~V~~ 101 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGF-QIGMKRLKVQL 101 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTC-EETTEECEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCC-EECCEEEEEEE
Confidence 45789999999999999999999999999999999999889999999999999999999999999998 99999999999
Q ss_pred cCCCCCC
Q 030227 86 SGQDKNT 92 (181)
Q Consensus 86 a~~~~~~ 92 (181)
+.+....
T Consensus 102 a~~~~~~ 108 (115)
T 2cpz_A 102 KRSKNDS 108 (115)
T ss_dssp CCCSCCC
T ss_pred cCCCCcC
Confidence 9875444
No 43
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=9.6e-21 Score=126.80 Aligned_cols=85 Identities=29% Similarity=0.466 Sum_probs=79.4
Q ss_pred CCCCCeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEEEEE
Q 030227 5 SNSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFA 84 (181)
Q Consensus 5 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i~v~ 84 (181)
..+.++|||+|||+++++++|+++|+.||.|..+.++.++ +++++|||||+|.+.++|+.|++.||+. .+.|+.|+|.
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~l~v~ 91 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGM-TIKENIIKVA 91 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTE-ESSSCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCC-EECCEEEEEE
Confidence 3568899999999999999999999999999999999997 8999999999999999999999999997 9999999999
Q ss_pred ecCCCCC
Q 030227 85 LSGQDKN 91 (181)
Q Consensus 85 ~a~~~~~ 91 (181)
++.+...
T Consensus 92 ~a~~~~~ 98 (100)
T 2do4_A 92 ISNSGPS 98 (100)
T ss_dssp ECCCCSC
T ss_pred ECCCCCC
Confidence 9977543
No 44
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=7.6e-21 Score=125.79 Aligned_cols=82 Identities=28% Similarity=0.487 Sum_probs=78.0
Q ss_pred CCCCCeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEEEEE
Q 030227 5 SNSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFA 84 (181)
Q Consensus 5 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i~v~ 84 (181)
..+.++|||+|||+++++++|+++|++||.|..+.++.++.++.++|||||+|.+.++|+.|++.||+. .+.|+.|+|.
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~-~~~g~~l~v~ 91 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNK-QLFGRVIKAS 91 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTE-EETTEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCC-eeCCcEEEEE
Confidence 356889999999999999999999999999999999999888999999999999999999999999997 9999999999
Q ss_pred ecC
Q 030227 85 LSG 87 (181)
Q Consensus 85 ~a~ 87 (181)
+++
T Consensus 92 ~ak 94 (94)
T 2e5h_A 92 IAI 94 (94)
T ss_dssp ECC
T ss_pred ecC
Confidence 974
No 45
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=7.3e-21 Score=126.87 Aligned_cols=87 Identities=26% Similarity=0.414 Sum_probs=79.8
Q ss_pred CCCCCeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCC---CCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEE
Q 030227 5 SNSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKE---TDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTL 81 (181)
Q Consensus 5 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~---~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i 81 (181)
+.+.++|||+|||+++++++|+++|+.||.|..|.++.++. ++.++|||||+|.+.++|+.|++.||+. .+.|+.|
T Consensus 2 s~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~l 80 (98)
T 2cpf_A 2 SSGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGH-TVDGHKL 80 (98)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTC-EETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCC-eeCCeEE
Confidence 35689999999999999999999999999999999998875 5689999999999999999999999998 9999999
Q ss_pred EEEecCCCCCC
Q 030227 82 RFALSGQDKNT 92 (181)
Q Consensus 82 ~v~~a~~~~~~ 92 (181)
+|.++.+....
T Consensus 81 ~V~~a~~~~~~ 91 (98)
T 2cpf_A 81 EVRISERATKP 91 (98)
T ss_dssp EEECSSCSSCC
T ss_pred EEEEccCCCCC
Confidence 99999775444
No 46
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=4.8e-21 Score=128.95 Aligned_cols=86 Identities=30% Similarity=0.485 Sum_probs=81.0
Q ss_pred CCCCeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEEEEEe
Q 030227 6 NSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFAL 85 (181)
Q Consensus 6 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i~v~~ 85 (181)
.+.++|||+|||+++++++|+++|+.||.|..|.++.++.++.++|||||+|.+.++|+.||+.||+. .+.|+.|+|.+
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~-~~~g~~l~V~~ 89 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGA-ELDGRELRVQV 89 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSC-CBTTBCCEEEE
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCC-EECCcEEEEEE
Confidence 56789999999999999999999999999999999999989999999999999999999999999998 99999999999
Q ss_pred cCCCCCC
Q 030227 86 SGQDKNT 92 (181)
Q Consensus 86 a~~~~~~ 92 (181)
+.+....
T Consensus 90 a~~~~~~ 96 (103)
T 2dnm_A 90 ARYGRRD 96 (103)
T ss_dssp CSSCCSC
T ss_pred CCcCCCC
Confidence 9875444
No 47
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.7e-20 Score=124.84 Aligned_cols=85 Identities=20% Similarity=0.282 Sum_probs=77.2
Q ss_pred CCCCCCCCeEEEcCCCCcCcHHHHH----HHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeC
Q 030227 2 SGNSNSGCNVYIGNLDEKVSERVLY----DILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLY 77 (181)
Q Consensus 2 s~~~~~~~~l~V~nLp~~~te~~l~----~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~ 77 (181)
|++..+.++|||+|||+++++++|+ ++|++||.|.+|.++.++.+ +|||||+|.+.++|+.||+.||+. .+.
T Consensus 3 s~~~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~-~~~ 78 (96)
T 2dgx_A 3 SGSSGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRY-KIG 78 (96)
T ss_dssp CCCCSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTE-EET
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCC-EEC
Confidence 3445668899999999999999999 99999999999999998654 899999999999999999999997 999
Q ss_pred CeEEEEEecCCCC
Q 030227 78 NRTLRFALSGQDK 90 (181)
Q Consensus 78 g~~i~v~~a~~~~ 90 (181)
|+.|+|.++.+..
T Consensus 79 gr~l~V~~a~~~~ 91 (96)
T 2dgx_A 79 SKKILVSLATGAS 91 (96)
T ss_dssp TEEEEEEECCCSS
T ss_pred CeEEEEEEcCCCC
Confidence 9999999997643
No 48
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.85 E-value=8.6e-22 Score=129.65 Aligned_cols=82 Identities=21% Similarity=0.300 Sum_probs=72.6
Q ss_pred CeEEEcCCCCcCcHHHHHHHHHhcC--CeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEEEEEec
Q 030227 9 CNVYIGNLDEKVSERVLYDILIQAG--RVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFALS 86 (181)
Q Consensus 9 ~~l~V~nLp~~~te~~l~~~f~~~G--~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i~v~~a 86 (181)
.+|||+|||+++++++|+++|+.|| .|.+++++.++.+|+++|||||+|.+.++|++||+.||+. .++|+.|+|.++
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~-~~~gr~i~V~~~ 80 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKR-ELHGQNPVVTPS 80 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGS-CSSSCCCEECCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCC-eeCCEEEEEEEC
Confidence 4799999999999999999999999 9999999999999999999999999999999999999998 999999999998
Q ss_pred CCCCC
Q 030227 87 GQDKN 91 (181)
Q Consensus 87 ~~~~~ 91 (181)
.+...
T Consensus 81 ~~~~~ 85 (90)
T 3p5t_L 81 NKLEH 85 (90)
T ss_dssp -----
T ss_pred CCCcc
Confidence 76443
No 49
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.85 E-value=7.1e-21 Score=127.27 Aligned_cols=83 Identities=23% Similarity=0.371 Sum_probs=78.7
Q ss_pred CCCCCCeEEEcCCCCcCcHHHHHHHHHhcCCeEE--------EEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCee
Q 030227 4 NSNSGCNVYIGNLDEKVSERVLYDILIQAGRVVD--------LYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVT 75 (181)
Q Consensus 4 ~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~--------~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~ 75 (181)
+..+.++|||+|||+++++++|+++|++||.|.. +.++.++.+|+++|||||+|.+.++|+.|++.||+. .
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~-~ 87 (99)
T 2la6_A 9 SHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGK-E 87 (99)
T ss_dssp SCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTC-B
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCC-E
Confidence 4567899999999999999999999999999999 999999889999999999999999999999999998 9
Q ss_pred eCCeEEEEEecC
Q 030227 76 LYNRTLRFALSG 87 (181)
Q Consensus 76 i~g~~i~v~~a~ 87 (181)
+.|+.|+|.+|+
T Consensus 88 ~~g~~l~V~~A~ 99 (99)
T 2la6_A 88 FSGNPIKVSFAT 99 (99)
T ss_dssp SSSSBCEEEECC
T ss_pred eCCcEEEEEecC
Confidence 999999999874
No 50
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.85 E-value=1.3e-21 Score=131.34 Aligned_cols=83 Identities=30% Similarity=0.353 Sum_probs=78.6
Q ss_pred CCCCCeEEEcCCCC------cCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCC
Q 030227 5 SNSGCNVYIGNLDE------KVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYN 78 (181)
Q Consensus 5 ~~~~~~l~V~nLp~------~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g 78 (181)
....++|||+|||. ++++++|+++|++||.|.+|.|+.++.+|+++|||||+|.+.++|++||+.||+. .+.|
T Consensus 3 ~~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~-~~~g 81 (100)
T 3ns6_A 3 LGSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGK-RLDL 81 (100)
T ss_dssp SCGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTC-BSSS
T ss_pred CCcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCc-ccCC
Confidence 34578999999999 9999999999999999999999999999999999999999999999999999998 9999
Q ss_pred -eEEEEEecCC
Q 030227 79 -RTLRFALSGQ 88 (181)
Q Consensus 79 -~~i~v~~a~~ 88 (181)
+.|+|.++.+
T Consensus 82 ~r~l~V~~a~~ 92 (100)
T 3ns6_A 82 KHRLFLYTMKD 92 (100)
T ss_dssp SCBCEEEESHH
T ss_pred CeEEEEEECch
Confidence 9999999865
No 51
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=1.6e-20 Score=127.04 Aligned_cols=88 Identities=18% Similarity=0.400 Sum_probs=81.4
Q ss_pred CCCCCeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecC-CCCCCcceEEEEEeCCHHHHHHHHHHh-CCCeeeCCeEEE
Q 030227 5 SNSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRD-KETDKPKGFAFVEYESEEIADYAIKLF-SGIVTLYNRTLR 82 (181)
Q Consensus 5 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~-~~~~~~~g~afV~f~~~~~a~~al~~l-~g~~~i~g~~i~ 82 (181)
..+.++|||+|||+.+++++|+++|+.||.|..|.++.+ +.++.++|||||+|.+.++|+.||..| |+. .+.|+.|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~-~~~g~~l~ 90 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHST-HLYGRRLV 90 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCC-BSSSCBCE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCC-eECCCEEE
Confidence 356889999999999999999999999999999999998 789999999999999999999999999 897 99999999
Q ss_pred EEecCCCCCCC
Q 030227 83 FALSGQDKNTQ 93 (181)
Q Consensus 83 v~~a~~~~~~~ 93 (181)
|.++.+.....
T Consensus 91 v~~a~~~~~~~ 101 (107)
T 2cph_A 91 LEWADSEVTVQ 101 (107)
T ss_dssp EEECCCCCCCC
T ss_pred EEeCCCCCCCC
Confidence 99998755443
No 52
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.85 E-value=9e-21 Score=128.18 Aligned_cols=87 Identities=21% Similarity=0.346 Sum_probs=80.6
Q ss_pred CCCCCeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeee---CCeEE
Q 030227 5 SNSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTL---YNRTL 81 (181)
Q Consensus 5 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i---~g~~i 81 (181)
..+.++|||+|||+++++++|+++|++||.|..|.++.++.+++++|||||+|.+.++|+.|++.||+. .+ .|+.|
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~-~~~~~~g~~l 88 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQ-KTLPGMNRPI 88 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTT-CCCTTCSSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCC-cccCCCCceE
Confidence 456889999999999999999999999999999999999989999999999999999999999999997 66 88999
Q ss_pred EEEecCCCCCC
Q 030227 82 RFALSGQDKNT 92 (181)
Q Consensus 82 ~v~~a~~~~~~ 92 (181)
+|.++.+....
T Consensus 89 ~v~~a~~~~~~ 99 (106)
T 2dgp_A 89 QVKPADSESRG 99 (106)
T ss_dssp EEEECCCCSCC
T ss_pred EEEECCccccc
Confidence 99999875544
No 53
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.85 E-value=1.1e-20 Score=128.67 Aligned_cols=84 Identities=20% Similarity=0.347 Sum_probs=79.3
Q ss_pred CCCCeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEEEEEe
Q 030227 6 NSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFAL 85 (181)
Q Consensus 6 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i~v~~ 85 (181)
.++++|||+|||+.+++++|+++|+.||.|..+.++.++.++.++|||||+|.+.++|+.|+..||+. .++|+.|+|.+
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~-~~~g~~l~V~~ 102 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGA-EIMGQTIQVDW 102 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTC-EETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCC-EECCcEEEEEE
Confidence 45778999999999999999999999999999999999889999999999999999999999999998 99999999999
Q ss_pred cCCCC
Q 030227 86 SGQDK 90 (181)
Q Consensus 86 a~~~~ 90 (181)
+.+..
T Consensus 103 a~~~~ 107 (110)
T 1oo0_B 103 CFVKG 107 (110)
T ss_dssp SEESS
T ss_pred cccCC
Confidence 97644
No 54
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.84 E-value=1.2e-20 Score=123.18 Aligned_cols=84 Identities=21% Similarity=0.351 Sum_probs=77.7
Q ss_pred CCCCeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCC-cceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEEEEE
Q 030227 6 NSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDK-PKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFA 84 (181)
Q Consensus 6 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~-~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i~v~ 84 (181)
...++|||+|||+++++++|+++|++||.|..+.++.++.++. ++|||||+|.+.++|+.|++.||+. .++|+.|+|.
T Consensus 2 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~l~v~ 80 (88)
T 4a8x_A 2 MKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGG-QIDGQEITAT 80 (88)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTC-EETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCC-eECCeEEEEE
Confidence 3478999999999999999999999999999999999876665 9999999999999999999999998 9999999999
Q ss_pred ecCCCC
Q 030227 85 LSGQDK 90 (181)
Q Consensus 85 ~a~~~~ 90 (181)
++.+..
T Consensus 81 ~a~~~~ 86 (88)
T 4a8x_A 81 AVLAPW 86 (88)
T ss_dssp EECCCC
T ss_pred ECCCCC
Confidence 997643
No 55
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=7.8e-21 Score=128.50 Aligned_cols=83 Identities=20% Similarity=0.342 Sum_probs=78.7
Q ss_pred CCCCeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEEEEEe
Q 030227 6 NSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFAL 85 (181)
Q Consensus 6 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i~v~~ 85 (181)
.++++|||+|||+++++++|+++|+.||.|..|.++.++.++.++|||||+|.+.++|+.|+..||+. .+.|+.|+|.+
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~l~V~~ 99 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQ-DLMGQPISVDW 99 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTC-BSSSSBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCC-EECCcEEEEEe
Confidence 45678999999999999999999999999999999999989999999999999999999999999998 99999999999
Q ss_pred cCCC
Q 030227 86 SGQD 89 (181)
Q Consensus 86 a~~~ 89 (181)
+.++
T Consensus 100 a~~~ 103 (106)
T 1p27_B 100 CFVR 103 (106)
T ss_dssp SEES
T ss_pred ecCC
Confidence 8764
No 56
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.84 E-value=2.3e-20 Score=121.79 Aligned_cols=81 Identities=22% Similarity=0.374 Sum_probs=75.8
Q ss_pred CCCCCCeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEEEE
Q 030227 4 NSNSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRF 83 (181)
Q Consensus 4 ~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i~v 83 (181)
...+.++|||+|||+++++++|+++|++||.|..+.++.++.+++++|||||+|.+.++|+.|++ +++. .++|+.|+|
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~-~~~g~~i~v 84 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEH-RLDGRVIDP 84 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCE-EETTEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCC-EECCEEEEE
Confidence 45678999999999999999999999999999999999998899999999999999999999997 5776 899999999
Q ss_pred Eec
Q 030227 84 ALS 86 (181)
Q Consensus 84 ~~a 86 (181)
.+|
T Consensus 85 ~~A 87 (87)
T 3s7r_A 85 KKA 87 (87)
T ss_dssp EEC
T ss_pred EeC
Confidence 875
No 57
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.84 E-value=2e-20 Score=126.22 Aligned_cols=86 Identities=22% Similarity=0.351 Sum_probs=79.5
Q ss_pred CCCCeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCC---eEEE
Q 030227 6 NSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYN---RTLR 82 (181)
Q Consensus 6 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g---~~i~ 82 (181)
.+.++|||+|||+++++++|+++|+.||.|..|.++.++ ++.++|||||+|.+.++|+.||+.||+. .+.| +.|+
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~-~~~gg~~~~l~ 90 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGS-QTMPGASSSLV 90 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSC-CCCTTCSSCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCC-ccCCCCCccEE
Confidence 568999999999999999999999999999999999997 7999999999999999999999999998 8887 9999
Q ss_pred EEecCCCCCCC
Q 030227 83 FALSGQDKNTQ 93 (181)
Q Consensus 83 v~~a~~~~~~~ 93 (181)
|.++.+.....
T Consensus 91 V~~a~~~~~~~ 101 (105)
T 2dnh_A 91 VKFADTDKESG 101 (105)
T ss_dssp EEESCSSCCCS
T ss_pred EEECccCcccC
Confidence 99998755443
No 58
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=2.2e-20 Score=126.87 Aligned_cols=88 Identities=23% Similarity=0.443 Sum_probs=80.1
Q ss_pred CCCCCCeEEEcCCCCcCcHHHHHHHHHhcCC-eEEEEEe-cCCCCCCcceEEEEEeCCHHHHHHHHHHhC--CCeeeCCe
Q 030227 4 NSNSGCNVYIGNLDEKVSERVLYDILIQAGR-VVDLYIP-RDKETDKPKGFAFVEYESEEIADYAIKLFS--GIVTLYNR 79 (181)
Q Consensus 4 ~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~-i~~~~i~-~~~~~~~~~g~afV~f~~~~~a~~al~~l~--g~~~i~g~ 79 (181)
.+.+.++|||+|||+++++++|+++|..||. |..+.++ .++.++.++|||||+|.+.++|+.|++.|+ +. .+.|+
T Consensus 4 ~s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~-~~~g~ 82 (109)
T 2dis_A 4 GSSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRI-QLWGH 82 (109)
T ss_dssp CCCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCS-CBTTB
T ss_pred cccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCc-eecCC
Confidence 3456889999999999999999999999998 9999998 788889999999999999999999999996 46 99999
Q ss_pred EEEEEecCCCCCC
Q 030227 80 TLRFALSGQDKNT 92 (181)
Q Consensus 80 ~i~v~~a~~~~~~ 92 (181)
.|+|.++.+....
T Consensus 83 ~l~V~~a~~~~~~ 95 (109)
T 2dis_A 83 QIAVDWAEPEIDV 95 (109)
T ss_dssp CCEEEESCSSCST
T ss_pred eEEEEEcCCCCCc
Confidence 9999999875544
No 59
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.84 E-value=3.4e-20 Score=131.27 Aligned_cols=89 Identities=24% Similarity=0.408 Sum_probs=82.3
Q ss_pred CCCCCCeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEEEE
Q 030227 4 NSNSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRF 83 (181)
Q Consensus 4 ~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i~v 83 (181)
...+.++|||+|||+++++++|+++|+.||.|..|.++.++.+++++|||||+|.+.++|++||+.||+. .+.|+.|+|
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~l~v 116 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGF-NILNKRLKV 116 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTE-ECSSCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCC-EECCeEEEE
Confidence 3456789999999999999999999999999999999999889999999999999999999999999997 999999999
Q ss_pred EecCCCCCCC
Q 030227 84 ALSGQDKNTQ 93 (181)
Q Consensus 84 ~~a~~~~~~~ 93 (181)
.++.+.....
T Consensus 117 ~~a~~~~~~~ 126 (139)
T 1u6f_A 117 ALAASGHQRP 126 (139)
T ss_dssp EESSCCCCCC
T ss_pred EECCCCCCCC
Confidence 9998755543
No 60
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=8e-20 Score=125.04 Aligned_cols=86 Identities=30% Similarity=0.449 Sum_probs=79.4
Q ss_pred CCCCCeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEEEEE
Q 030227 5 SNSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFA 84 (181)
Q Consensus 5 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i~v~ 84 (181)
..+.++|||+|||+++++++|+++|..||.|..|.++.++ +++++|||||+|.+.++|+.||+.||+. .+.|+.|+|.
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~l~v~ 89 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQ-LLFDRPMHVK 89 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTC-EETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCC-EeCCCEEEEE
Confidence 4568899999999999999999999999999999999997 5999999999999999999999999998 9999999999
Q ss_pred ecCCCCCC
Q 030227 85 LSGQDKNT 92 (181)
Q Consensus 85 ~a~~~~~~ 92 (181)
++......
T Consensus 90 ~a~~~~~~ 97 (114)
T 2do0_A 90 MDERALPK 97 (114)
T ss_dssp ECSCCCCC
T ss_pred EcccCCCC
Confidence 99764443
No 61
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=6.8e-20 Score=123.29 Aligned_cols=86 Identities=16% Similarity=0.337 Sum_probs=78.0
Q ss_pred CCCCCCeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEEEE
Q 030227 4 NSNSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRF 83 (181)
Q Consensus 4 ~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i~v 83 (181)
...+.++|||+|||+.+++++|+++|+.||.|..|.++.++. .++|||||+|.+.++|+.|++.||+. .+.|+.|+|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~l~V 87 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAALAAMNGR-KILGKEVKV 87 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC--SSCCEEEEEESSHHHHHHHHHHHTTE-EETTEEEEE
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC--CCCCEEEEEECCHHHHHHHHHHhCCC-CcCCCeEEE
Confidence 345689999999999999999999999999999999999853 47899999999999999999999997 999999999
Q ss_pred EecCCCCCC
Q 030227 84 ALSGQDKNT 92 (181)
Q Consensus 84 ~~a~~~~~~ 92 (181)
.++.+....
T Consensus 88 ~~a~~~~~~ 96 (103)
T 2cqi_A 88 NWATTPSSQ 96 (103)
T ss_dssp EECCCTTCC
T ss_pred EECCCCccc
Confidence 999875443
No 62
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.84 E-value=2.7e-20 Score=128.21 Aligned_cols=86 Identities=22% Similarity=0.462 Sum_probs=80.1
Q ss_pred CCCCCeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEEEEE
Q 030227 5 SNSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFA 84 (181)
Q Consensus 5 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i~v~ 84 (181)
..+.++|||+|||+++++++|+++|++||.|..|.++.++ ++.++|||||+|.+.++|+.|++.||+. .+.|+.|+|.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~-~~~g~~l~V~ 81 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGK-SLHGKAIKVE 81 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSC-BCSSSBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCC-EECCEEEEEE
Confidence 4568999999999999999999999999999999999997 8999999999999999999999999998 9999999999
Q ss_pred ecCCCCCC
Q 030227 85 LSGQDKNT 92 (181)
Q Consensus 85 ~a~~~~~~ 92 (181)
++.+....
T Consensus 82 ~a~~~~~~ 89 (116)
T 2fy1_A 82 QAKKPSFQ 89 (116)
T ss_dssp ECCCSSCS
T ss_pred ECCCCCCC
Confidence 99875443
No 63
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.84 E-value=1.8e-20 Score=135.57 Aligned_cols=81 Identities=21% Similarity=0.364 Sum_probs=76.8
Q ss_pred CCCeEEEcCCCCcCcHHHHHHHHHhcC--CeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEEEEE
Q 030227 7 SGCNVYIGNLDEKVSERVLYDILIQAG--RVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFA 84 (181)
Q Consensus 7 ~~~~l~V~nLp~~~te~~l~~~f~~~G--~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i~v~ 84 (181)
..++|||+|||+++++++|+++|+.|| .|..|+++.|+.+|+++|||||+|.+.++|+.||..||+. .|+|+.|+|.
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~-~~~Gr~l~V~ 132 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGK-VLNGEKVDVR 132 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTC-EETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCC-EECCeEeEEE
Confidence 468999999999999999999999999 9999999999999999999999999999999999999998 9999999999
Q ss_pred ecCC
Q 030227 85 LSGQ 88 (181)
Q Consensus 85 ~a~~ 88 (181)
++.+
T Consensus 133 ~a~~ 136 (156)
T 3n9u_C 133 PATR 136 (156)
T ss_dssp ECCH
T ss_pred EcCC
Confidence 9865
No 64
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.84 E-value=2.4e-20 Score=122.04 Aligned_cols=81 Identities=22% Similarity=0.386 Sum_probs=76.9
Q ss_pred CCCeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEEEEEec
Q 030227 7 SGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFALS 86 (181)
Q Consensus 7 ~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i~v~~a 86 (181)
..++|||+|||+++++++|+++|+.||.|..+.++.++.+++++|||||+|.+.++|+.|+ .||+. .+.|+.|+|.++
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~-~~~g~~l~V~~a 82 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDES-LFRGRQIKVIPK 82 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTC-EETTEECEEEET
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCC-EECCcEEEEEEc
Confidence 3689999999999999999999999999999999999889999999999999999999999 89998 999999999998
Q ss_pred CCC
Q 030227 87 GQD 89 (181)
Q Consensus 87 ~~~ 89 (181)
++.
T Consensus 83 ~~~ 85 (89)
T 3ucg_A 83 RTN 85 (89)
T ss_dssp TTT
T ss_pred cCC
Confidence 763
No 65
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.7e-20 Score=126.60 Aligned_cols=83 Identities=19% Similarity=0.321 Sum_probs=73.9
Q ss_pred CCCCCCeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCC-eeeCCeEEE
Q 030227 4 NSNSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGI-VTLYNRTLR 82 (181)
Q Consensus 4 ~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~-~~i~g~~i~ 82 (181)
+..+.++|||+|||+++++++|+++|++||.|.+|.++++ +|||||+|.+.++|+.|++.|++. ..+.|++|+
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 85 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 85 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 4567999999999999999999999999999999999875 599999999999999999988642 389999999
Q ss_pred EEecCCCCCC
Q 030227 83 FALSGQDKNT 92 (181)
Q Consensus 83 v~~a~~~~~~ 92 (181)
|.++.++...
T Consensus 86 V~~A~~~~~~ 95 (105)
T 1sjq_A 86 IQFSNHKELK 95 (105)
T ss_dssp BCCCSSSSCC
T ss_pred EEEcCCCCCC
Confidence 9999775444
No 66
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.84 E-value=2.6e-20 Score=125.35 Aligned_cols=85 Identities=27% Similarity=0.461 Sum_probs=78.9
Q ss_pred CCCCCeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEEEEE
Q 030227 5 SNSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFA 84 (181)
Q Consensus 5 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i~v~ 84 (181)
..+.++|||+|||+++++++|+++|+.|| |..|.++.++.+++++|||||+|.+.++|+.|| .||+. .+.|+.|+|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~-~~~g~~l~V~ 88 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGA-LLGDRSLRVD 88 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTC-EETTEECEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCC-eECCeEEEEE
Confidence 46688999999999999999999999997 999999999989999999999999999999999 79998 9999999999
Q ss_pred ecCCCCCC
Q 030227 85 LSGQDKNT 92 (181)
Q Consensus 85 ~a~~~~~~ 92 (181)
++.+....
T Consensus 89 ~a~~~~~~ 96 (103)
T 2dng_A 89 IAEGRKQD 96 (103)
T ss_dssp ECCCCCCC
T ss_pred EecCCCCC
Confidence 99875443
No 67
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.84 E-value=8e-21 Score=133.25 Aligned_cols=86 Identities=27% Similarity=0.425 Sum_probs=81.0
Q ss_pred CCCCCCeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEEEE
Q 030227 4 NSNSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRF 83 (181)
Q Consensus 4 ~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i~v 83 (181)
...+.++|||+|||+++++++|+++|+.||.|..|.++.++.+++++|||||+|.+.++|+.||+.||+. .+.|+.|+|
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~-~i~g~~l~V 120 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGM-ELDGRRIRV 120 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTC-CSSSSCCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCC-EECCEEEEE
Confidence 3467889999999999999999999999999999999999989999999999999999999999999998 999999999
Q ss_pred EecCCCC
Q 030227 84 ALSGQDK 90 (181)
Q Consensus 84 ~~a~~~~ 90 (181)
.++.+++
T Consensus 121 ~~a~~~~ 127 (129)
T 2kxn_B 121 DFSITKR 127 (129)
T ss_dssp SCCSSSS
T ss_pred EEecCCC
Confidence 9997754
No 68
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.84 E-value=1.4e-20 Score=128.07 Aligned_cols=85 Identities=25% Similarity=0.479 Sum_probs=80.0
Q ss_pred CCCCCCeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEEEE
Q 030227 4 NSNSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRF 83 (181)
Q Consensus 4 ~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i~v 83 (181)
...+.++|||+|||..+++++|+++|+.||.|..+.++.++.+++++|||||+|.+.++|+.|++.||+. .+.|+.|+|
T Consensus 22 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~-~i~g~~l~V 100 (108)
T 2jrs_A 22 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGF-ELAGRPMKV 100 (108)
T ss_dssp SCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTC-CSSSSCCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCC-EECCEEEEE
Confidence 3456889999999999999999999999999999999999889999999999999999999999999998 999999999
Q ss_pred EecCCC
Q 030227 84 ALSGQD 89 (181)
Q Consensus 84 ~~a~~~ 89 (181)
.++.++
T Consensus 101 ~~a~~k 106 (108)
T 2jrs_A 101 GHVTER 106 (108)
T ss_dssp ECSCSS
T ss_pred EEcccC
Confidence 998763
No 69
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.84 E-value=3.6e-20 Score=125.43 Aligned_cols=81 Identities=23% Similarity=0.364 Sum_probs=77.2
Q ss_pred CCCCCeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEEEEE
Q 030227 5 SNSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFA 84 (181)
Q Consensus 5 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i~v~ 84 (181)
..+.++|||+|||+.+++++|+++|+.||.|..+.++.++ +++++|||||+|.+.++|+.||+.||+. .+.|+.|+|.
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~l~V~ 103 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGV-PLDGRPMNIQ 103 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTC-EETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCC-EeCCcEEEEE
Confidence 3568899999999999999999999999999999999997 8999999999999999999999999998 9999999999
Q ss_pred ecC
Q 030227 85 LSG 87 (181)
Q Consensus 85 ~a~ 87 (181)
++.
T Consensus 104 ~a~ 106 (107)
T 3ulh_A 104 LVT 106 (107)
T ss_dssp EEC
T ss_pred EeC
Confidence 975
No 70
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=2.7e-20 Score=127.27 Aligned_cols=87 Identities=31% Similarity=0.431 Sum_probs=80.9
Q ss_pred CCCCCeEEEcCCCCcCcHHHHHHHHHhcCCeE--------EEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeee
Q 030227 5 SNSGCNVYIGNLDEKVSERVLYDILIQAGRVV--------DLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTL 76 (181)
Q Consensus 5 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~--------~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i 76 (181)
..+.++|||+|||+++++++|+++|+.||.|. .|.++.++.+++++|||||+|.+.++|+.||+.||+. .+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~-~~ 90 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGK-DF 90 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTC-EE
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCC-cc
Confidence 35688999999999999999999999999998 6999999889999999999999999999999999998 99
Q ss_pred CCeEEEEEecCCCCCC
Q 030227 77 YNRTLRFALSGQDKNT 92 (181)
Q Consensus 77 ~g~~i~v~~a~~~~~~ 92 (181)
.|+.|+|.++.+....
T Consensus 91 ~g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 91 QGSKLKVSLARKKPPM 106 (113)
T ss_dssp TTEECEEECSSCCCCS
T ss_pred CCCEEEEEECCCCCCC
Confidence 9999999999875544
No 71
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.84 E-value=3.3e-20 Score=122.22 Aligned_cols=85 Identities=25% Similarity=0.463 Sum_probs=78.7
Q ss_pred CCCCCCeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEEEE
Q 030227 4 NSNSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRF 83 (181)
Q Consensus 4 ~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i~v 83 (181)
...+.++|||+|||+++++++|+++|++||.|..+.++.+ +++++|||||+|.+.++|+.|++.||+. .+.|+.|+|
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~-~~~g~~l~v 80 (92)
T 2dgv_A 4 GSSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGM-KLSGREIDV 80 (92)
T ss_dssp SSSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTC-CBTTBCCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCC-EECCcEEEE
Confidence 4567899999999999999999999999999999999874 7899999999999999999999999998 999999999
Q ss_pred EecCCCCC
Q 030227 84 ALSGQDKN 91 (181)
Q Consensus 84 ~~a~~~~~ 91 (181)
.++.+...
T Consensus 81 ~~a~~~~~ 88 (92)
T 2dgv_A 81 RIDRNASG 88 (92)
T ss_dssp EECSCCSS
T ss_pred EEcCCCCC
Confidence 99977544
No 72
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=3.1e-20 Score=125.21 Aligned_cols=85 Identities=20% Similarity=0.414 Sum_probs=78.8
Q ss_pred CCCCCeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCC-CCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEEEE
Q 030227 5 SNSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKET-DKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRF 83 (181)
Q Consensus 5 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~-~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i~v 83 (181)
..+.++|||+|||+++++++|+++|+.|| |..|.++.++.+ ++++|||||+|.+.++|+.|| .||+. .+.|+.|+|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~-~~~g~~l~V 88 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEE-SLGNKRIRV 88 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTC-EETTEECEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCC-EeCCcEEEE
Confidence 35678999999999999999999999999 999999999887 999999999999999999999 89998 999999999
Q ss_pred EecCCCCCC
Q 030227 84 ALSGQDKNT 92 (181)
Q Consensus 84 ~~a~~~~~~ 92 (181)
.++.+....
T Consensus 89 ~~a~~~~~~ 97 (104)
T 1wi8_A 89 DVADQAQDK 97 (104)
T ss_dssp EECCCCCCC
T ss_pred EEccCCCCC
Confidence 999875544
No 73
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=2.7e-20 Score=125.42 Aligned_cols=87 Identities=20% Similarity=0.380 Sum_probs=80.5
Q ss_pred CCCCCCeEEEcCCCCcCcHHHHHHHHHh-cCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCee-eCCeEE
Q 030227 4 NSNSGCNVYIGNLDEKVSERVLYDILIQ-AGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVT-LYNRTL 81 (181)
Q Consensus 4 ~~~~~~~l~V~nLp~~~te~~l~~~f~~-~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~-i~g~~i 81 (181)
...+.++|||+|||+++++++|+++|+. ||.|..|.++.++ ++.++|||||+|.+.++|+.||+.||+. . +.|+.|
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~-~~~~g~~l 82 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGA-VGLGSKPV 82 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTC-CSSSSSCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCC-cccCCEeE
Confidence 3466899999999999999999999999 9999999999998 9999999999999999999999999998 7 999999
Q ss_pred EEEecCCCCCC
Q 030227 82 RFALSGQDKNT 92 (181)
Q Consensus 82 ~v~~a~~~~~~ 92 (181)
+|.++.+....
T Consensus 83 ~v~~a~~~~~~ 93 (104)
T 2dhg_A 83 RLSVAIPKASR 93 (104)
T ss_dssp CCCBCCCCCSC
T ss_pred EEEEccCCCcC
Confidence 99999765443
No 74
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.83 E-value=3e-20 Score=123.11 Aligned_cols=82 Identities=37% Similarity=0.725 Sum_probs=77.1
Q ss_pred CCCCCeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEEEEE
Q 030227 5 SNSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFA 84 (181)
Q Consensus 5 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i~v~ 84 (181)
..+.++|||+|||+.+++++|+++|++||.|..|.++.++. ++++|||||+|.+.++|+.|++.||+. .+.|+.|+|.
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~l~V~ 90 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGI-RLYGRPINVS 90 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTC-EETTEECEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCC-EECCCEEEEE
Confidence 35678999999999999999999999999999999999975 999999999999999999999999998 9999999999
Q ss_pred ecCC
Q 030227 85 LSGQ 88 (181)
Q Consensus 85 ~a~~ 88 (181)
+++.
T Consensus 91 ~a~~ 94 (95)
T 2ywk_A 91 GPSS 94 (95)
T ss_dssp CCCC
T ss_pred EcCC
Confidence 9864
No 75
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.3e-19 Score=124.48 Aligned_cols=83 Identities=18% Similarity=0.277 Sum_probs=78.2
Q ss_pred CCCCCeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEEEEE
Q 030227 5 SNSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFA 84 (181)
Q Consensus 5 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i~v~ 84 (181)
..+.++|||+|||+++++++|+++|++||.|..|+|+.++.+++++|||||+|.+.++|++||+.+++ .+.|+.|+|.
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~--~~~g~~l~V~ 91 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP--IIDGRKANVN 91 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC--EETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC--cCCCEEEEEE
Confidence 35688999999999999999999999999999999999998999999999999999999999999987 7999999999
Q ss_pred ecCCC
Q 030227 85 LSGQD 89 (181)
Q Consensus 85 ~a~~~ 89 (181)
++...
T Consensus 92 ~a~~~ 96 (116)
T 2cqd_A 92 LAYLG 96 (116)
T ss_dssp ESTTT
T ss_pred EcccC
Confidence 99764
No 76
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.83 E-value=3.2e-20 Score=126.43 Aligned_cols=86 Identities=23% Similarity=0.374 Sum_probs=75.9
Q ss_pred CCCCCCeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEEEE
Q 030227 4 NSNSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRF 83 (181)
Q Consensus 4 ~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i~v 83 (181)
...+.++|||+|||+++++++|+++|+.||.|..|.++.++.+|.++|||||+|.+.++|+.||+.++ . .++|+.|+|
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~-~-~l~g~~l~V 98 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-H-ELDSKTIDP 98 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSC-E-EETTEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCC-C-cCCCEEEEE
Confidence 34668999999999999999999999999999999999999899999999999999999999999764 5 999999999
Q ss_pred EecCCCCC
Q 030227 84 ALSGQDKN 91 (181)
Q Consensus 84 ~~a~~~~~ 91 (181)
.++.+...
T Consensus 99 ~~a~~~~~ 106 (109)
T 2rs2_A 99 KVAFPRRA 106 (109)
T ss_dssp EECCCCCC
T ss_pred EEccCCCC
Confidence 99976443
No 77
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=3.1e-20 Score=124.97 Aligned_cols=86 Identities=24% Similarity=0.388 Sum_probs=79.6
Q ss_pred CCCCCeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEEEEE
Q 030227 5 SNSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFA 84 (181)
Q Consensus 5 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i~v~ 84 (181)
..+.++|||+|||+++++++|+++|+.||.|..|.++.+ ++.++|||||+|.+.++|+.||+.||+. .+.|+.|+|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~-~~~g~~l~V~ 88 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGR-IVATKPLYVA 88 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTC-BSSSSBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCC-EeCCcEEEEE
Confidence 456899999999999999999999999999999999987 7899999999999999999999999998 9999999999
Q ss_pred ecCCCCCCC
Q 030227 85 LSGQDKNTQ 93 (181)
Q Consensus 85 ~a~~~~~~~ 93 (181)
++.++....
T Consensus 89 ~a~~~~~~~ 97 (103)
T 2d9p_A 89 LAQRKEERQ 97 (103)
T ss_dssp ECSSCCCCC
T ss_pred EecccccCC
Confidence 998755443
No 78
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.83 E-value=1.8e-20 Score=129.09 Aligned_cols=82 Identities=27% Similarity=0.485 Sum_probs=77.3
Q ss_pred CCCCCeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEEEEE
Q 030227 5 SNSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFA 84 (181)
Q Consensus 5 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i~v~ 84 (181)
..+.++|||+|||+++++++|+++|++||.|..+.++.++.+++++|||||+|.+.++|+.|++.||+. .++|+.|+|.
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~-~~~g~~l~V~ 115 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGF-QVGTKRLKVQ 115 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCC-EETTEECCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCC-EECCEEEEEE
Confidence 355789999999999999999999999999999999999889999999999999999999999999998 9999999999
Q ss_pred ecC
Q 030227 85 LSG 87 (181)
Q Consensus 85 ~a~ 87 (181)
+++
T Consensus 116 ~ak 118 (118)
T 2khc_A 116 LKK 118 (118)
T ss_dssp EC-
T ss_pred ecC
Confidence 874
No 79
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.2e-19 Score=122.12 Aligned_cols=86 Identities=21% Similarity=0.300 Sum_probs=78.0
Q ss_pred CCCCCCeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEEEE
Q 030227 4 NSNSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRF 83 (181)
Q Consensus 4 ~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i~v 83 (181)
...+.++|||+|||+++++++|+++|+.||.|..|.++.++. .++|||||+|.+.++|+.|+..||+. .+.|+.|+|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~l~v 87 (103)
T 2cq3_A 11 SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGT-VVEGRKIEV 87 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTC-EETTEECEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCC-EECCEEEEE
Confidence 346689999999999999999999999999999999998853 48999999999999999999999998 999999999
Q ss_pred EecCCCCCC
Q 030227 84 ALSGQDKNT 92 (181)
Q Consensus 84 ~~a~~~~~~ 92 (181)
.++.+....
T Consensus 88 ~~a~~~~~~ 96 (103)
T 2cq3_A 88 NNATARVMT 96 (103)
T ss_dssp EECCSSCCC
T ss_pred EEcccCCCC
Confidence 999775443
No 80
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=3.1e-20 Score=125.35 Aligned_cols=86 Identities=23% Similarity=0.350 Sum_probs=79.9
Q ss_pred CCCCCeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEEEEE
Q 030227 5 SNSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFA 84 (181)
Q Consensus 5 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i~v~ 84 (181)
..+.++|||+|||+.+++++|+++|+.||.|..|.++.++.++.++|||||+|.+.++|+.||.. ++. .+.|+.|+|.
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~-~~~g~~l~V~ 90 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPH-TLDGRNIDPK 90 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSE-EETTEEEBCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCC-eECCEEEEEE
Confidence 36688999999999999999999999999999999999988999999999999999999999998 887 9999999999
Q ss_pred ecCCCCCC
Q 030227 85 LSGQDKNT 92 (181)
Q Consensus 85 ~a~~~~~~ 92 (181)
++.+....
T Consensus 91 ~a~~~~~~ 98 (105)
T 2dh8_A 91 PCTPRGMQ 98 (105)
T ss_dssp CSCCSSCC
T ss_pred EccCCCCC
Confidence 99775443
No 81
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.83 E-value=1e-19 Score=131.32 Aligned_cols=86 Identities=28% Similarity=0.513 Sum_probs=80.8
Q ss_pred CCCCeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEEEEEe
Q 030227 6 NSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFAL 85 (181)
Q Consensus 6 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i~v~~ 85 (181)
.+.++|||+|||+++++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||+.||+. .|.|+.|+|.|
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~-~~~g~~l~V~~ 115 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGT-RLDDRIIRTDW 115 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTS-EETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCC-EECCeEEEEEE
Confidence 46789999999999999999999999999999999999989999999999999999999999999998 99999999999
Q ss_pred cCCCCCC
Q 030227 86 SGQDKNT 92 (181)
Q Consensus 86 a~~~~~~ 92 (181)
+.+....
T Consensus 116 a~~~~~~ 122 (156)
T 1h2v_Z 116 DAGFKEG 122 (156)
T ss_dssp ESCCCTT
T ss_pred CCCCCCc
Confidence 9874443
No 82
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=3.7e-21 Score=125.06 Aligned_cols=82 Identities=22% Similarity=0.341 Sum_probs=76.9
Q ss_pred CCCCCeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEEEEE
Q 030227 5 SNSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFA 84 (181)
Q Consensus 5 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i~v~ 84 (181)
+.++++|||+|||+++++++|+++|++||.|..+.++.++.++.++|||||+|.+.++|+.|++.||+. .+.|+.|++.
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~~~~~ 80 (85)
T 1x4e_A 2 SSGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKAS-GVQAQMAKQS 80 (85)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHH-TCCEESCCSS
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCC-eEeeEEEeec
Confidence 456899999999999999999999999999999999999889999999999999999999999999998 9999998887
Q ss_pred ecC
Q 030227 85 LSG 87 (181)
Q Consensus 85 ~a~ 87 (181)
++.
T Consensus 81 ~~~ 83 (85)
T 1x4e_A 81 GPS 83 (85)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 83
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.82 E-value=3.6e-20 Score=128.99 Aligned_cols=86 Identities=20% Similarity=0.323 Sum_probs=80.3
Q ss_pred CCCCeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEEEEEe
Q 030227 6 NSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFAL 85 (181)
Q Consensus 6 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i~v~~ 85 (181)
.++++|||+|||+.+++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|+.||+.||+. .+.|+.|+|.+
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~l~v~~ 98 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQ-DLMGQPISVDW 98 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTC-BSSSSBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCC-eeCCeEEEEEE
Confidence 45779999999999999999999999999999999999889999999999999999999999999998 99999999999
Q ss_pred cCCCCCC
Q 030227 86 SGQDKNT 92 (181)
Q Consensus 86 a~~~~~~ 92 (181)
+.+....
T Consensus 99 a~~~~~~ 105 (126)
T 3ex7_B 99 CFVRGPP 105 (126)
T ss_dssp SEESSSC
T ss_pred ecCCCCC
Confidence 9765444
No 84
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.82 E-value=8.7e-20 Score=131.75 Aligned_cols=86 Identities=30% Similarity=0.508 Sum_probs=80.6
Q ss_pred CCCCeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEEEEEe
Q 030227 6 NSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFAL 85 (181)
Q Consensus 6 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i~v~~ 85 (181)
.+.++|||+|||+++++++|+++|+.||.|..|.++.++.+|.++|||||+|.+.++|+.||+.||+. .+.|+.|+|.+
T Consensus 68 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~l~v~~ 146 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGA-VLDGRELRVQM 146 (158)
T ss_dssp CBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTE-ESSSSEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCC-EECCeEEEEEE
Confidence 44789999999999999999999999999999999999889999999999999999999999999997 99999999999
Q ss_pred cCCCCCC
Q 030227 86 SGQDKNT 92 (181)
Q Consensus 86 a~~~~~~ 92 (181)
+.+....
T Consensus 147 a~~~~~~ 153 (158)
T 2kn4_A 147 ARYGRPP 153 (158)
T ss_dssp ECCSSCC
T ss_pred CCCCCCC
Confidence 9875443
No 85
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=1.1e-19 Score=119.53 Aligned_cols=83 Identities=18% Similarity=0.264 Sum_probs=77.3
Q ss_pred CCCCCCeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEEEE
Q 030227 4 NSNSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRF 83 (181)
Q Consensus 4 ~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i~v 83 (181)
.....++|||+|||+++++++|+++|+.| .|..+.++.+ .+|+++|||||+|.+.++|+.||+ ||+. .+.|+.|+|
T Consensus 6 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~-~~~gr~i~v 81 (91)
T 2dgw_A 6 SGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNRE-YMGGRYIEV 81 (91)
T ss_dssp CCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSE-EETTEEEEE
T ss_pred CCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCc-eeCCcEEEE
Confidence 34568899999999999999999999999 9999999999 789999999999999999999999 9997 999999999
Q ss_pred EecCCCC
Q 030227 84 ALSGQDK 90 (181)
Q Consensus 84 ~~a~~~~ 90 (181)
.++.+..
T Consensus 82 ~~a~~~~ 88 (91)
T 2dgw_A 82 FREKSGP 88 (91)
T ss_dssp EEESSCC
T ss_pred EECCcCC
Confidence 9997753
No 86
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.82 E-value=1.4e-20 Score=124.75 Aligned_cols=82 Identities=17% Similarity=0.167 Sum_probs=75.6
Q ss_pred CCCCeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEEEEEe
Q 030227 6 NSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFAL 85 (181)
Q Consensus 6 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i~v~~ 85 (181)
++.++|||+|||+++++++|+++|++||.|..+.++.++.+++++|||||+|.+.++|++||+.||+. .+.|+.|+|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~-~~~gr~l~v~~ 91 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDR-PIGSRKVKLSG 91 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTC-EETTEECEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCC-eECCcEEEEEe
Confidence 45689999999999999999999999999998888888889999999999999999999999999998 99999999998
Q ss_pred cCC
Q 030227 86 SGQ 88 (181)
Q Consensus 86 a~~ 88 (181)
+.+
T Consensus 92 a~s 94 (95)
T 2ek1_A 92 PSS 94 (95)
T ss_dssp CC-
T ss_pred ccC
Confidence 754
No 87
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=2.7e-20 Score=125.67 Aligned_cols=80 Identities=20% Similarity=0.262 Sum_probs=75.2
Q ss_pred CCCCeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEEEEEe
Q 030227 6 NSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFAL 85 (181)
Q Consensus 6 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i~v~~ 85 (181)
.+.++|||+|||+++|+++|+++|++||.|.+|.++.++. +.++|||||+|.+.++|+.||. +++. .++|+.|.|.+
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~-~~~gr~l~V~~ 85 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQ-KYKETDLLILF 85 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCC-CCTTTTCEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCC-EECCEEEEEEE
Confidence 4578999999999999999999999999999999999986 9999999999999999999999 8997 99999999998
Q ss_pred cCC
Q 030227 86 SGQ 88 (181)
Q Consensus 86 a~~ 88 (181)
+..
T Consensus 86 ~~~ 88 (103)
T 1s79_A 86 KDD 88 (103)
T ss_dssp HHH
T ss_pred chH
Confidence 754
No 88
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.82 E-value=1.5e-19 Score=125.62 Aligned_cols=86 Identities=22% Similarity=0.352 Sum_probs=79.7
Q ss_pred CCCCCeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEEEEE
Q 030227 5 SNSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFA 84 (181)
Q Consensus 5 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i~v~ 84 (181)
..++++|||+|||+.+++++|+++|+.||.|..|.++.++ +|+++|||||+|.+.++|+.|++.||+. .+.|+.|+|.
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~-~~~g~~l~V~ 109 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGV-PLDGRPMDIQ 109 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTE-ESSSCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCC-EECCcEEEEE
Confidence 3567899999999999999999999999999999999997 8999999999999999999999999997 9999999999
Q ss_pred ecCCCCCC
Q 030227 85 LSGQDKNT 92 (181)
Q Consensus 85 ~a~~~~~~ 92 (181)
++.+....
T Consensus 110 ~a~~~~~~ 117 (124)
T 2kt5_A 110 LVASQIDL 117 (124)
T ss_dssp EECCTTCC
T ss_pred EeCCCCCC
Confidence 99774433
No 89
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=3e-20 Score=123.84 Aligned_cols=82 Identities=18% Similarity=0.190 Sum_probs=76.9
Q ss_pred CCCCeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEEEEEe
Q 030227 6 NSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFAL 85 (181)
Q Consensus 6 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i~v~~ 85 (181)
...++|||+|||+++++++|+++|..||.|..+.++.++.+++++|||||+|.+.++|+.||+.||+. .+.|+.|+|.+
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~-~~~g~~l~V~~ 91 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDR-PIGSRKVKLVL 91 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTC-EETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCC-eeCCeEEEEEE
Confidence 44678999999999999999999999999998888888889999999999999999999999999998 99999999999
Q ss_pred cCC
Q 030227 86 SGQ 88 (181)
Q Consensus 86 a~~ 88 (181)
+..
T Consensus 92 a~~ 94 (98)
T 2cqp_A 92 GSG 94 (98)
T ss_dssp SSC
T ss_pred cCC
Confidence 865
No 90
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=3.5e-20 Score=124.79 Aligned_cols=84 Identities=36% Similarity=0.573 Sum_probs=79.3
Q ss_pred CCCeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEEEEEec
Q 030227 7 SGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFALS 86 (181)
Q Consensus 7 ~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i~v~~a 86 (181)
+.++|||+|||+.+++++|+++|+.||.|..+.++.++.+|.++|||||+|.+.++|+.|++.||+. .+.|+.|+|.++
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~l~v~~a 85 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGR-EFSGRALRVDNA 85 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSB-SCSSSCBEEEET
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCC-eeCCcEEEEEeC
Confidence 4689999999999999999999999999999999999889999999999999999999999999998 999999999999
Q ss_pred CCCCC
Q 030227 87 GQDKN 91 (181)
Q Consensus 87 ~~~~~ 91 (181)
.+...
T Consensus 86 ~~~~~ 90 (104)
T 1p1t_A 86 ASEKN 90 (104)
T ss_dssp TCTTH
T ss_pred CCccc
Confidence 87544
No 91
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=2.8e-19 Score=120.24 Aligned_cols=84 Identities=19% Similarity=0.259 Sum_probs=77.3
Q ss_pred CCCCCeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEEEEE
Q 030227 5 SNSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFA 84 (181)
Q Consensus 5 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i~v~ 84 (181)
..+.++|||+|||+++++++|+++|+.||.|..|.++.++.+++++|||||+|.+.++|+.||. ++. .++|+.|+|.
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~-~~~g~~l~v~ 88 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRH-MIDGRWCDCK 88 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCE-EETTEEEEEE
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCC-eeCCeEEEEE
Confidence 3568899999999999999999999999999999999998899999999999999999999999 355 8999999999
Q ss_pred ecCCCCC
Q 030227 85 LSGQDKN 91 (181)
Q Consensus 85 ~a~~~~~ 91 (181)
++.+...
T Consensus 89 ~a~~~~~ 95 (103)
T 2cqg_A 89 LPNSKQS 95 (103)
T ss_dssp CCCTTCC
T ss_pred ecCCCCc
Confidence 9977544
No 92
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.82 E-value=1.2e-19 Score=128.24 Aligned_cols=81 Identities=40% Similarity=0.628 Sum_probs=76.7
Q ss_pred CCCCCeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEEEEE
Q 030227 5 SNSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFA 84 (181)
Q Consensus 5 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i~v~ 84 (181)
..+.++|||+|||+.+++++|+++|++||.|..+.++.++.+++++|||||+|.+.++|++|++.||+. .+.|+.|+|.
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~l~v~ 138 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNES-ELFGRTIRVN 138 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEE-EETTEEEEEE
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCC-EECCEEEEEE
Confidence 456889999999999999999999999999999999999889999999999999999999999999997 9999999998
Q ss_pred ec
Q 030227 85 LS 86 (181)
Q Consensus 85 ~a 86 (181)
+|
T Consensus 139 ~A 140 (140)
T 2ku7_A 139 LA 140 (140)
T ss_dssp C-
T ss_pred eC
Confidence 75
No 93
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=2.8e-19 Score=121.47 Aligned_cols=84 Identities=25% Similarity=0.436 Sum_probs=76.2
Q ss_pred CCCCCeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEEEEE
Q 030227 5 SNSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFA 84 (181)
Q Consensus 5 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i~v~ 84 (181)
..+.++|||+|||+++++++|+++|++||.|..|.+..+ +.++|||||+|.+.++|+.||+.||+. .+.|+.|+|.
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~-~~~g~~l~V~ 94 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGY-DYDGYRLRVE 94 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTC-EETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCC-EECCeEEEEE
Confidence 356789999999999999999999999999999999654 568999999999999999999999998 9999999999
Q ss_pred ecCCCCCC
Q 030227 85 LSGQDKNT 92 (181)
Q Consensus 85 ~a~~~~~~ 92 (181)
++.+.+..
T Consensus 95 ~a~~~~~~ 102 (109)
T 1x4a_A 95 FPRSGRGT 102 (109)
T ss_dssp CCCCCCCC
T ss_pred EcccCCCC
Confidence 99875544
No 94
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.82 E-value=2.3e-20 Score=118.44 Aligned_cols=75 Identities=24% Similarity=0.414 Sum_probs=71.9
Q ss_pred eEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEEEEEec
Q 030227 10 NVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFALS 86 (181)
Q Consensus 10 ~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i~v~~a 86 (181)
+|||+|||+++++++|+++|++||.|..+.++.++.+++++|||||+|.+.++|++|++ ||+. .++|+.|+|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~-~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFH-EINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCC-CSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCC-EECCEEEEEEeC
Confidence 58999999999999999999999999999999998899999999999999999999998 9998 999999999875
No 95
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.81 E-value=1.6e-19 Score=125.39 Aligned_cols=82 Identities=23% Similarity=0.389 Sum_probs=77.4
Q ss_pred CCeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEEEEEecC
Q 030227 8 GCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFALSG 87 (181)
Q Consensus 8 ~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i~v~~a~ 87 (181)
.++|||+|||+++++++|+++|+.||.|..|.++.++.++.++|||||+|.+.++|+.|| .||+. .++|+.|+|.++.
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~-~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDET-VFRGRTIKVLPKR 113 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTC-EETTEECEEEESS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCC-eECCeEEEEEECC
Confidence 579999999999999999999999999999999999889999999999999999999999 79998 9999999999997
Q ss_pred CCCC
Q 030227 88 QDKN 91 (181)
Q Consensus 88 ~~~~ 91 (181)
+...
T Consensus 114 ~~~~ 117 (124)
T 2jwn_A 114 TNMP 117 (124)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 6443
No 96
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.81 E-value=2e-19 Score=120.20 Aligned_cols=79 Identities=20% Similarity=0.123 Sum_probs=71.9
Q ss_pred CCCCCeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCC-eeeCCeEEEE
Q 030227 5 SNSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGI-VTLYNRTLRF 83 (181)
Q Consensus 5 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~-~~i~g~~i~v 83 (181)
..|+++|||+|||+++++++|+++|++||.|.++.+++ .+|+|||+|.+.++|..|++.|++. +.+.|++|+|
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V 91 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFV 91 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEE
Confidence 46799999999999999999999999999999999975 3589999999999999999999986 3489999999
Q ss_pred EecCCC
Q 030227 84 ALSGQD 89 (181)
Q Consensus 84 ~~a~~~ 89 (181)
.+|+.+
T Consensus 92 ~~S~~k 97 (100)
T 3r27_A 92 NYSTSQ 97 (100)
T ss_dssp EECSCS
T ss_pred Eecccc
Confidence 999764
No 97
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.81 E-value=2.6e-20 Score=124.87 Aligned_cols=81 Identities=22% Similarity=0.428 Sum_probs=74.5
Q ss_pred CCCCeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCC-CCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEEEEE
Q 030227 6 NSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDK-ETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFA 84 (181)
Q Consensus 6 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~-~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i~v~ 84 (181)
...++|||+|||+++++++|+++|+.|| |.+|.++.++ .+|+++|||||+|.+.++|+.|| .||+. .+.|+.|+|.
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~-~~~g~~l~V~ 93 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEE-SLGNRRIRVD 93 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTC-CBTTBCCCCE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCC-EECCeEEEEE
Confidence 5689999999999999999999999999 9999999997 68999999999999999999999 79998 9999999999
Q ss_pred ecCCC
Q 030227 85 LSGQD 89 (181)
Q Consensus 85 ~a~~~ 89 (181)
++.+.
T Consensus 94 ~a~~~ 98 (100)
T 2j76_E 94 VADQA 98 (100)
T ss_dssp ECCCS
T ss_pred eccCC
Confidence 98764
No 98
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.81 E-value=4.2e-20 Score=129.76 Aligned_cols=85 Identities=18% Similarity=0.341 Sum_probs=78.3
Q ss_pred CCCCeEEEcCCCCcCcHHHHHHHHHhcCCeEE--EEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCC---eeeCCeE
Q 030227 6 NSGCNVYIGNLDEKVSERVLYDILIQAGRVVD--LYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGI---VTLYNRT 80 (181)
Q Consensus 6 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~--~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~---~~i~g~~ 80 (181)
.+.++|||+|||+++++++|+++|++||.|.. |+|++|+.+|+++|||||+|.+. +|..|+..||+. +.++|+.
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~ 99 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKT 99 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEE
Confidence 56789999999999999999999999999977 99999999999999999999999 999999999994 3789999
Q ss_pred EEEEecCCCCC
Q 030227 81 LRFALSGQDKN 91 (181)
Q Consensus 81 i~v~~a~~~~~ 91 (181)
|+|.++.+...
T Consensus 100 l~V~~a~~~~~ 110 (131)
T 2m2b_A 100 INVEFAKGSKR 110 (131)
T ss_dssp CCCEECCCSCC
T ss_pred EEEEECCCCCC
Confidence 99999977543
No 99
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=7.7e-20 Score=124.84 Aligned_cols=84 Identities=19% Similarity=0.271 Sum_probs=77.0
Q ss_pred CCCCeEEEcCCCCcCcHHHHH---HHHHhcCCeEEEEEecCCCCC---CcceEEEEEeCCHHHHHHHHHHhCCCeeeCCe
Q 030227 6 NSGCNVYIGNLDEKVSERVLY---DILIQAGRVVDLYIPRDKETD---KPKGFAFVEYESEEIADYAIKLFSGIVTLYNR 79 (181)
Q Consensus 6 ~~~~~l~V~nLp~~~te~~l~---~~f~~~G~i~~~~i~~~~~~~---~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~ 79 (181)
.+.++|||+|||+++++++|+ ++|++||.|..+.++.++.++ .++|||||+|.+.++|+.||+.||+. .++|+
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~-~~~gr 91 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNV-VVDGR 91 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTE-EETTE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCC-EECCE
Confidence 457899999999999999999 999999999999999887644 56699999999999999999999998 99999
Q ss_pred EEEEEecCCCC
Q 030227 80 TLRFALSGQDK 90 (181)
Q Consensus 80 ~i~v~~a~~~~ 90 (181)
.|+|.++.++.
T Consensus 92 ~l~V~~a~~k~ 102 (111)
T 2cpi_A 92 TLKASLGTTKY 102 (111)
T ss_dssp EEEEESCCCCS
T ss_pred EEEEEeccccc
Confidence 99999998755
No 100
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=1e-19 Score=122.48 Aligned_cols=82 Identities=20% Similarity=0.237 Sum_probs=73.0
Q ss_pred CCCCCeEEEcCCCC-cCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCC-eeeCCeEEE
Q 030227 5 SNSGCNVYIGNLDE-KVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGI-VTLYNRTLR 82 (181)
Q Consensus 5 ~~~~~~l~V~nLp~-~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~-~~i~g~~i~ 82 (181)
..++++|||+|||+ ++++++|+++|++||.|.+|.++++ +|||||+|.+.++|+.|++.||+. ..+.|++|+
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 85 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVR 85 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEE
Confidence 46789999999999 9999999999999999999999875 379999999999999999998864 269999999
Q ss_pred EEecCCCCCC
Q 030227 83 FALSGQDKNT 92 (181)
Q Consensus 83 v~~a~~~~~~ 92 (181)
|.++...+..
T Consensus 86 V~~a~~~~~~ 95 (102)
T 1x4d_A 86 VHLSQKYKRI 95 (102)
T ss_dssp EEEECCCTTS
T ss_pred EEECCCCCCC
Confidence 9999864443
No 101
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.81 E-value=1.7e-19 Score=123.23 Aligned_cols=81 Identities=17% Similarity=0.147 Sum_probs=72.6
Q ss_pred CCCCCCeEEEcCCCCcCcHHHHHHHHHhcC-CeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEEE
Q 030227 4 NSNSGCNVYIGNLDEKVSERVLYDILIQAG-RVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLR 82 (181)
Q Consensus 4 ~~~~~~~l~V~nLp~~~te~~l~~~f~~~G-~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i~ 82 (181)
.....++|||+|||+++++++|+++|++|| .|..+.+.. ..++|||||+|.+.++|+.||+.||+. .++|+.|+
T Consensus 24 ~p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~-~l~Gr~i~ 98 (111)
T 2jvr_A 24 LPAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLNNI-EFRGSVIT 98 (111)
T ss_dssp -CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTE-EETTEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCC-EECCeEEE
Confidence 455678999999999999999999999999 899998853 348899999999999999999999998 99999999
Q ss_pred EEecCCC
Q 030227 83 FALSGQD 89 (181)
Q Consensus 83 v~~a~~~ 89 (181)
|.++...
T Consensus 99 V~~a~~~ 105 (111)
T 2jvr_A 99 VERDDNP 105 (111)
T ss_dssp EEESCC-
T ss_pred EEECCCC
Confidence 9998654
No 102
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.4e-19 Score=123.94 Aligned_cols=80 Identities=25% Similarity=0.375 Sum_probs=76.2
Q ss_pred CCeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEEEEEecC
Q 030227 8 GCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFALSG 87 (181)
Q Consensus 8 ~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i~v~~a~ 87 (181)
.++|||+|||+++++++|+++|+.||.|..|.++.++.++.++|||||+|.+.++|+.|| .||+. .+.|+.|+|.++.
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~-~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 25 ARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQ-RLLGVPIIVQASQ 102 (114)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTE-EETTEEEEEEEHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCC-EeCCeEEEEEecC
Confidence 579999999999999999999999999999999999988999999999999999999999 89997 9999999999986
Q ss_pred CC
Q 030227 88 QD 89 (181)
Q Consensus 88 ~~ 89 (181)
+.
T Consensus 103 ~~ 104 (114)
T 2cq4_A 103 AE 104 (114)
T ss_dssp HH
T ss_pred CC
Confidence 53
No 103
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.81 E-value=2.3e-19 Score=130.73 Aligned_cols=85 Identities=20% Similarity=0.340 Sum_probs=78.6
Q ss_pred CCCCeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEEEEEe
Q 030227 6 NSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFAL 85 (181)
Q Consensus 6 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i~v~~ 85 (181)
.++++|||+|||+.+++++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|+.||..||+. .|.|+.|.|.|
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~-~~~g~~l~V~~ 148 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGA-EIMGQTIQVDW 148 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTC-EETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCC-EECCEEEEEEE
Confidence 44678999999999999999999999999999999999889999999999999999999999999998 99999999999
Q ss_pred cCCCCC
Q 030227 86 SGQDKN 91 (181)
Q Consensus 86 a~~~~~ 91 (181)
+.+...
T Consensus 149 a~~~~~ 154 (165)
T 1rk8_A 149 CFVKGP 154 (165)
T ss_dssp SEECC-
T ss_pred ecCCCC
Confidence 976444
No 104
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=2e-19 Score=123.51 Aligned_cols=84 Identities=21% Similarity=0.322 Sum_probs=78.2
Q ss_pred CCCeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEEEEEec
Q 030227 7 SGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFALS 86 (181)
Q Consensus 7 ~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i~v~~a 86 (181)
+.++|||+|||+++++++|+++|..||.|..|.++.++.++.++|||||+|.+.++|+.||+. ++. .++|+.|+|.++
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~-~~~g~~l~V~~a 103 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPH-SIDGRVVEPKRA 103 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSE-EETTEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCc-EECCEEEEEEEC
Confidence 358999999999999999999999999999999999998999999999999999999999997 886 999999999999
Q ss_pred CCCCCC
Q 030227 87 GQDKNT 92 (181)
Q Consensus 87 ~~~~~~ 92 (181)
.+....
T Consensus 104 ~~~~~~ 109 (116)
T 1x4b_A 104 VAREES 109 (116)
T ss_dssp SSCCCC
T ss_pred CCCccC
Confidence 875443
No 105
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.80 E-value=1.5e-20 Score=123.42 Aligned_cols=81 Identities=32% Similarity=0.538 Sum_probs=73.8
Q ss_pred CeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEEEEEecCC
Q 030227 9 CNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFALSGQ 88 (181)
Q Consensus 9 ~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i~v~~a~~ 88 (181)
++|||+|||+++++++|+++|++||.|..+.++.++.+++++|||||+|.+.+ |+.|+..||+. .++|+.|+|.+|.+
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~-~~~g~~l~V~~a~~ 79 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNT-DFMGRTIRVTEANP 79 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSS-CCSSSSCSEEEC--
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCC-EECCeEEEEEEcCC
Confidence 58999999999999999999999999999999999989999999999999999 99999999998 99999999999976
Q ss_pred CCC
Q 030227 89 DKN 91 (181)
Q Consensus 89 ~~~ 91 (181)
...
T Consensus 80 ~~~ 82 (90)
T 2ki2_A 80 KKS 82 (90)
T ss_dssp ---
T ss_pred CCC
Confidence 433
No 106
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=3.8e-19 Score=116.78 Aligned_cols=81 Identities=23% Similarity=0.369 Sum_probs=74.1
Q ss_pred CCCCCCCeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEEE
Q 030227 3 GNSNSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLR 82 (181)
Q Consensus 3 ~~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i~ 82 (181)
....+.++|||+|||+++++++|+++|++||.|..+.++ +|||||+|.+.++|+.|++.||+. .+.|+.|+
T Consensus 3 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~-~~~g~~l~ 73 (90)
T 2dnq_A 3 SGSSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHY-KLHGVNIN 73 (90)
T ss_dssp SCSSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTC-BCSSCBCE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCC-ccCCcEEE
Confidence 456678999999999999999999999999999999986 579999999999999999999997 99999999
Q ss_pred EEecCCCCCC
Q 030227 83 FALSGQDKNT 92 (181)
Q Consensus 83 v~~a~~~~~~ 92 (181)
|.++.+....
T Consensus 74 v~~a~~~~~~ 83 (90)
T 2dnq_A 74 VEASKNKSKA 83 (90)
T ss_dssp EECSSCCCCC
T ss_pred EEECCCCCCC
Confidence 9999775444
No 107
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.80 E-value=5.2e-20 Score=130.06 Aligned_cols=86 Identities=30% Similarity=0.508 Sum_probs=80.3
Q ss_pred CCCCeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEEEEEe
Q 030227 6 NSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFAL 85 (181)
Q Consensus 6 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i~v~~ 85 (181)
.+.++|||+|||+++++++|+++|+.||.|..|.++.++.+++++|||||+|.+.++|+.||+.||+. .+.|+.|+|.+
T Consensus 45 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~-~i~g~~l~V~~ 123 (135)
T 2lea_A 45 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGA-VLDGRELRVQM 123 (135)
T ss_dssp GGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTC-CSSSSCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCC-EECCEEEEEEE
Confidence 44779999999999999999999999999999999999889999999999999999999999999998 99999999999
Q ss_pred cCCCCCC
Q 030227 86 SGQDKNT 92 (181)
Q Consensus 86 a~~~~~~ 92 (181)
+++....
T Consensus 124 a~~~~~~ 130 (135)
T 2lea_A 124 ARYGRPP 130 (135)
T ss_dssp CCCCCCC
T ss_pred CCCCCCC
Confidence 9875444
No 108
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.1e-19 Score=122.28 Aligned_cols=83 Identities=22% Similarity=0.320 Sum_probs=76.5
Q ss_pred CCCCCCeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEEEE
Q 030227 4 NSNSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRF 83 (181)
Q Consensus 4 ~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i~v 83 (181)
...+.++|||+|||.++++++|+++|++||.|..+.++.++ +.++|||||+|.+.++|+.|++.||+. .++|+.|+|
T Consensus 25 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~-~~~g~~l~V 101 (109)
T 2err_A 25 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGT-VVEGRKIEV 101 (109)
T ss_dssp CTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTC-EETTEECEE
T ss_pred CCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCC-EECCEEEEE
Confidence 34568899999999999999999999999999999999885 458999999999999999999999998 999999999
Q ss_pred EecCCC
Q 030227 84 ALSGQD 89 (181)
Q Consensus 84 ~~a~~~ 89 (181)
.++.++
T Consensus 102 ~~a~~~ 107 (109)
T 2err_A 102 NNATAR 107 (109)
T ss_dssp EECCCS
T ss_pred EECCCC
Confidence 998763
No 109
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=3.4e-20 Score=118.14 Aligned_cols=76 Identities=24% Similarity=0.402 Sum_probs=72.8
Q ss_pred CeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEEEEEec
Q 030227 9 CNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFALS 86 (181)
Q Consensus 9 ~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i~v~~a 86 (181)
++|||+|||+++++++|+++|++||.|..+.++.++.+++++|||||+|.+.++|+.|++.++ . .++|+.|+|.+|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~-~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-H-ELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-C-CCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-C-ccCCEEEEEEec
Confidence 579999999999999999999999999999999998899999999999999999999999998 6 999999999986
No 110
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.80 E-value=2.2e-19 Score=121.37 Aligned_cols=81 Identities=26% Similarity=0.375 Sum_probs=74.6
Q ss_pred CCCCeEEEcCCCCcC------cHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCe
Q 030227 6 NSGCNVYIGNLDEKV------SERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNR 79 (181)
Q Consensus 6 ~~~~~l~V~nLp~~~------te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~ 79 (181)
...++|||+|||+.+ ++++|+++|++||.|..|.++ +.+|+++|||||+|.+.++|+.||..|||. .+.|+
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~-~~~g~ 89 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGY-KLDKQ 89 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSE-ECSTT
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCc-ccCCC
Confidence 447899999999999 789999999999999999988 368999999999999999999999999997 99998
Q ss_pred -EEEEEecCCC
Q 030227 80 -TLRFALSGQD 89 (181)
Q Consensus 80 -~i~v~~a~~~ 89 (181)
.|+|.++...
T Consensus 90 ~~l~V~~a~~~ 100 (105)
T 2nlw_A 90 HTFRVNLFTDF 100 (105)
T ss_dssp CEEEEECSCCC
T ss_pred ceEEEEEcchH
Confidence 9999998653
No 111
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.80 E-value=4.6e-19 Score=115.06 Aligned_cols=74 Identities=20% Similarity=0.245 Sum_probs=69.6
Q ss_pred CCCeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEEEEEec
Q 030227 7 SGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFALS 86 (181)
Q Consensus 7 ~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i~v~~a 86 (181)
.+.-|||+||++.+||++|+++|.+||+|.++++.. ++|||||+|.+.++|+.|++.||+. .+.|++|+|.+|
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~-~l~gr~I~V~~A 78 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNC-VLANTTIFAESP 78 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTE-EETTEEEEEECC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCC-EECCcEEEEEEC
Confidence 467899999999999999999999999999999864 6899999999999999999999997 999999999998
Q ss_pred C
Q 030227 87 G 87 (181)
Q Consensus 87 ~ 87 (181)
.
T Consensus 79 ~ 79 (89)
T 2wbr_A 79 S 79 (89)
T ss_dssp C
T ss_pred C
Confidence 4
No 112
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=5.3e-19 Score=118.82 Aligned_cols=80 Identities=21% Similarity=0.288 Sum_probs=71.7
Q ss_pred CCCCeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhC--CCeeeCCeEEEE
Q 030227 6 NSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFS--GIVTLYNRTLRF 83 (181)
Q Consensus 6 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~--g~~~i~g~~i~v 83 (181)
.++++|||+|||+.+++++|+++|++||.|..+.++++ +|||||+|.+.++|+.|++.|+ +. .+.|++|+|
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~-~~~Gr~l~V 85 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTP-HLRNQPIYI 85 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCC-EETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCc-eECCcEEEE
Confidence 67899999999999999999999999999999998764 6999999999999999999774 55 899999999
Q ss_pred EecCCCCCC
Q 030227 84 ALSGQDKNT 92 (181)
Q Consensus 84 ~~a~~~~~~ 92 (181)
.++..+...
T Consensus 86 ~~a~~~~~~ 94 (101)
T 2cq1_A 86 QYSNHKELK 94 (101)
T ss_dssp EECSCSSCC
T ss_pred EEcCcccCc
Confidence 999764433
No 113
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=1.2e-18 Score=118.21 Aligned_cols=80 Identities=24% Similarity=0.287 Sum_probs=73.6
Q ss_pred CCCCeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCC-----eE
Q 030227 6 NSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYN-----RT 80 (181)
Q Consensus 6 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g-----~~ 80 (181)
...++|||+|||+++++++|+++|++||.|..|.|+.+ |||||+|.+.++|+.||+.||+. .+.| +.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~-~~~g~~~~~~~ 84 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNT-KFRSHEGETAY 84 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSE-EEECTTSCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcC-CccCCcCcceE
Confidence 45789999999999999999999999999999999876 89999999999999999999998 9999 99
Q ss_pred EEEEecCCCCCCC
Q 030227 81 LRFALSGQDKNTQ 93 (181)
Q Consensus 81 i~v~~a~~~~~~~ 93 (181)
|+|.++.+.....
T Consensus 85 i~V~~a~~~~~~~ 97 (108)
T 1x4c_A 85 IRVKVDGPRSPSY 97 (108)
T ss_dssp EEEEESSCCSCCC
T ss_pred EEEEeCCCCCCCC
Confidence 9999998754443
No 114
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=4.3e-19 Score=119.90 Aligned_cols=83 Identities=22% Similarity=0.209 Sum_probs=73.0
Q ss_pred CCCCCeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCC-eeeCCeEEEE
Q 030227 5 SNSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGI-VTLYNRTLRF 83 (181)
Q Consensus 5 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~-~~i~g~~i~v 83 (181)
..++++|||+|||+++++++|+++|++||.|..+.++++ +|||||+|.+.++|+.|++.|++. +.+.|++|+|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V 85 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFF 85 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 367899999999999999999999999999999998764 689999999999999999988754 2599999999
Q ss_pred EecCCCCCCC
Q 030227 84 ALSGQDKNTQ 93 (181)
Q Consensus 84 ~~a~~~~~~~ 93 (181)
.++..+....
T Consensus 86 ~~a~~~~~~~ 95 (104)
T 1wex_A 86 NYSTSKRITR 95 (104)
T ss_dssp EECSSSSCCC
T ss_pred EEccCccccC
Confidence 9997754443
No 115
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=3.3e-19 Score=122.04 Aligned_cols=81 Identities=30% Similarity=0.437 Sum_probs=76.1
Q ss_pred CCCCeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeee--------C
Q 030227 6 NSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTL--------Y 77 (181)
Q Consensus 6 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i--------~ 77 (181)
.+.++|||+|||+++++++|+++|+.||.|..+.++.++ ++.++|||||+|.+.++|+.||..||+. .+ .
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~-~~~~~~~~~~~ 100 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGK-FIKTPPGVSAP 100 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTC-CCCCCTTSCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCC-EEcCCccccCC
Confidence 567899999999999999999999999999999999997 8999999999999999999999999998 88 5
Q ss_pred CeEEEEEecCC
Q 030227 78 NRTLRFALSGQ 88 (181)
Q Consensus 78 g~~i~v~~a~~ 88 (181)
+++|+|.|+.+
T Consensus 101 ~~~l~v~~a~p 111 (114)
T 1x5o_A 101 TEPLLCKFSGP 111 (114)
T ss_dssp SSCBEEEECCC
T ss_pred CCceeEEccCC
Confidence 78899999875
No 116
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=4.7e-19 Score=117.90 Aligned_cols=80 Identities=23% Similarity=0.358 Sum_probs=73.2
Q ss_pred CCCCCeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeC--CeEEE
Q 030227 5 SNSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLY--NRTLR 82 (181)
Q Consensus 5 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~--g~~i~ 82 (181)
..+.++|||+|||+++++++|+++|++||.|..+.++.+ +|||||+|.+.++|+.|++.||+. .+. |+.|+
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~-~~~~~g~~l~ 86 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGF-PLGGPDRRLR 86 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTC-BCSSSSCBCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCC-EeCCCCcEEE
Confidence 466899999999999999999999999999999998754 689999999999999999999998 899 99999
Q ss_pred EEecCCCCC
Q 030227 83 FALSGQDKN 91 (181)
Q Consensus 83 v~~a~~~~~ 91 (181)
|.++.++..
T Consensus 87 V~~a~~~~~ 95 (97)
T 1why_A 87 VDFAKSGPS 95 (97)
T ss_dssp EEECCCCCC
T ss_pred EEECCCCCC
Confidence 999987543
No 117
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=6.1e-19 Score=118.17 Aligned_cols=82 Identities=26% Similarity=0.426 Sum_probs=74.2
Q ss_pred CCCCCeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEEEEE
Q 030227 5 SNSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFA 84 (181)
Q Consensus 5 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i~v~ 84 (181)
..+.++|||+|||+++++++|+++|++||.| .++.+ .+++++|||||+|.+.++|+.||+.||+. .+.|+.|+|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~-~~~g~~l~v~ 86 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKR-EIEGRAIRLE 86 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSE-EETTEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCC-EeCCeEEEEE
Confidence 3568999999999999999999999999976 56666 57899999999999999999999999997 9999999999
Q ss_pred ecCCCCC
Q 030227 85 LSGQDKN 91 (181)
Q Consensus 85 ~a~~~~~ 91 (181)
++.+...
T Consensus 87 ~a~~~~~ 93 (101)
T 2fc9_A 87 LQGPRGS 93 (101)
T ss_dssp ECSSCCC
T ss_pred EcCCCCC
Confidence 9977543
No 118
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.4e-19 Score=124.15 Aligned_cols=83 Identities=14% Similarity=0.121 Sum_probs=76.9
Q ss_pred CCCCCeEEEcCCCCcCcHHHHHHHHHhcCCe-EEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEEEE
Q 030227 5 SNSGCNVYIGNLDEKVSERVLYDILIQAGRV-VDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRF 83 (181)
Q Consensus 5 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i-~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i~v 83 (181)
..+.++|||+|||+++++++|+++|+.||.| ..|.|+.++ +++++|||||+|.+.++|+.||+. |+. .|.|+.|+|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~-~~~gr~i~v 88 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRK-KLNGREAFV 88 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSE-EETTEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCC-ccCCeEEEE
Confidence 4567899999999999999999999999999 889999997 899999999999999999999996 987 999999999
Q ss_pred EecCCCC
Q 030227 84 ALSGQDK 90 (181)
Q Consensus 84 ~~a~~~~ 90 (181)
.++.+..
T Consensus 89 ~~a~~~~ 95 (114)
T 2cpy_A 89 HVVTLED 95 (114)
T ss_dssp EEECHHH
T ss_pred EECCHHH
Confidence 9987643
No 119
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=3.3e-19 Score=123.03 Aligned_cols=82 Identities=20% Similarity=0.321 Sum_probs=73.0
Q ss_pred CCCCCeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCC-eeeCCeEEEE
Q 030227 5 SNSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGI-VTLYNRTLRF 83 (181)
Q Consensus 5 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~-~~i~g~~i~v 83 (181)
..++++|||+|||+++++++|+++|++||.|..|.++++ +|||||+|.+.++|++|++.|++. ..+.|++|+|
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V 101 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 101 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEE
Confidence 356899999999999999999999999999999999875 699999999999999999988742 3799999999
Q ss_pred EecCCCCCC
Q 030227 84 ALSGQDKNT 92 (181)
Q Consensus 84 ~~a~~~~~~ 92 (181)
.++.++...
T Consensus 102 ~~a~~k~~~ 110 (119)
T 2ad9_A 102 QFSNHKELK 110 (119)
T ss_dssp EECSSSSCC
T ss_pred EEccCCCCC
Confidence 999764443
No 120
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.80 E-value=1.3e-19 Score=128.11 Aligned_cols=81 Identities=21% Similarity=0.186 Sum_probs=75.8
Q ss_pred CCCCCeEEEcCCCCcCcHHHHHHHHHhcCC---eEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEE
Q 030227 5 SNSGCNVYIGNLDEKVSERVLYDILIQAGR---VVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTL 81 (181)
Q Consensus 5 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~---i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i 81 (181)
..+.++|||+|||+++|+++|+++|+.||. |..|+|+.++. |+++|||||+|.+.++|++||+ ||+. .++|+.|
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~-~l~gr~i 117 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRE-SMGHRYI 117 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEE-ESSSSEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCC-EECCEEE
Confidence 355789999999999999999999999999 88999999976 9999999999999999999999 9997 9999999
Q ss_pred EEEecCC
Q 030227 82 RFALSGQ 88 (181)
Q Consensus 82 ~v~~a~~ 88 (181)
+|.++.+
T Consensus 118 ~V~~a~~ 124 (136)
T 2hgl_A 118 EVFKSHR 124 (136)
T ss_dssp EEEECCH
T ss_pred EEEECCh
Confidence 9999854
No 121
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.80 E-value=4.6e-19 Score=123.85 Aligned_cols=82 Identities=20% Similarity=0.366 Sum_probs=73.8
Q ss_pred CCCCCeEEEcCCCCcCcHHHHH----HHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeE
Q 030227 5 SNSGCNVYIGNLDEKVSERVLY----DILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRT 80 (181)
Q Consensus 5 ~~~~~~l~V~nLp~~~te~~l~----~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~ 80 (181)
..++++|||+|||+.+++++|+ ++|++||.|..|.+.. +++++|||||+|.+.++|+.|+..|||. .+.|++
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~-~l~gr~ 101 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGY-PFQGNP 101 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTC-CCTTSC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCC-EeCCCE
Confidence 3568899999999999999865 7999999999988754 5789999999999999999999999998 999999
Q ss_pred EEEEecCCCC
Q 030227 81 LRFALSGQDK 90 (181)
Q Consensus 81 i~v~~a~~~~ 90 (181)
|+|.|+....
T Consensus 102 l~V~~a~~~~ 111 (127)
T 2a3j_A 102 LVITFSETPQ 111 (127)
T ss_dssp CEEEECCCCC
T ss_pred EEEEEccCcc
Confidence 9999997643
No 122
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=3.8e-19 Score=120.05 Aligned_cols=81 Identities=22% Similarity=0.251 Sum_probs=75.1
Q ss_pred CCCCeEEEcCCCCcCcHHHHHHHHHhcCCeEE-EEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEEEEE
Q 030227 6 NSGCNVYIGNLDEKVSERVLYDILIQAGRVVD-LYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFA 84 (181)
Q Consensus 6 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~-~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i~v~ 84 (181)
.+.++|||+|||+++++++|+++|+.||.|.. +.|+.+ .+++++|||||+|.+.++|+.||.. ++. .++|+.|+|.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~-~~~gr~i~v~ 89 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKE-RIGHRYIEIF 89 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTC-CSSSSCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-Ccc-hhCCcEEEEE
Confidence 55789999999999999999999999999987 889988 6899999999999999999999996 887 9999999999
Q ss_pred ecCCC
Q 030227 85 LSGQD 89 (181)
Q Consensus 85 ~a~~~ 89 (181)
++...
T Consensus 90 ~~~~~ 94 (104)
T 1wg5_A 90 KSSRA 94 (104)
T ss_dssp EECTT
T ss_pred ECCHH
Confidence 98653
No 123
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.80 E-value=1.8e-19 Score=124.34 Aligned_cols=80 Identities=24% Similarity=0.217 Sum_probs=75.2
Q ss_pred CCCCeEEEcCCCCcCcHHHHHHHHHhcCC---eEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEEE
Q 030227 6 NSGCNVYIGNLDEKVSERVLYDILIQAGR---VVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLR 82 (181)
Q Consensus 6 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~---i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i~ 82 (181)
.+.++|||+|||+++++++|+++|+.||. |..|+++.++. |+++|||||+|.+.++|++||+ +|+. .|+|+.|+
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~-~~~gr~i~ 91 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRE-SMGHRYIE 91 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTE-EETTEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCC-eECCeEEE
Confidence 45789999999999999999999999998 89999999976 9999999999999999999999 9997 99999999
Q ss_pred EEecCC
Q 030227 83 FALSGQ 88 (181)
Q Consensus 83 v~~a~~ 88 (181)
|.++..
T Consensus 92 V~~a~~ 97 (118)
T 2db1_A 92 VFKSHR 97 (118)
T ss_dssp EEEECH
T ss_pred EEECCH
Confidence 999865
No 124
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.79 E-value=5.2e-19 Score=118.48 Aligned_cols=78 Identities=29% Similarity=0.472 Sum_probs=72.5
Q ss_pred CeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEEEEEecCC
Q 030227 9 CNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFALSGQ 88 (181)
Q Consensus 9 ~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i~v~~a~~ 88 (181)
++|||+|||+++++++|+++|++||.|..+.++.+ ++|||||+|.+.++|+.|++.||+. .+.|+.|+|.++.+
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~l~V~~a~~ 74 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGK-VICGSRVRVELSTG 74 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHS-CSSSCCCEEEESSS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCC-eECCcEEEEEEccC
Confidence 58999999999999999999999999999999876 7899999999999999999999998 99999999999987
Q ss_pred CCCC
Q 030227 89 DKNT 92 (181)
Q Consensus 89 ~~~~ 92 (181)
....
T Consensus 75 ~~~~ 78 (101)
T 2hvz_A 75 MPRR 78 (101)
T ss_dssp CCCS
T ss_pred CCCc
Confidence 5533
No 125
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=1.5e-18 Score=113.95 Aligned_cols=81 Identities=23% Similarity=0.452 Sum_probs=73.5
Q ss_pred CCCCCCCeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEEE
Q 030227 3 GNSNSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLR 82 (181)
Q Consensus 3 ~~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i~ 82 (181)
+...+.++|||+|||+++++++|+++|++||.|..+.+++ +||||+|.+.++|+.|++.||+. .+.|+.|+
T Consensus 4 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~-~~~g~~l~ 74 (90)
T 2dnp_A 4 GSSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGK-EVKGKRIN 74 (90)
T ss_dssp CSSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTC-EETTEECE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCC-EECCcEEE
Confidence 3456789999999999999999999999999999999974 39999999999999999999998 99999999
Q ss_pred EEecCCCCCC
Q 030227 83 FALSGQDKNT 92 (181)
Q Consensus 83 v~~a~~~~~~ 92 (181)
|.++.+....
T Consensus 75 v~~a~~~~~~ 84 (90)
T 2dnp_A 75 VELSTKGQKK 84 (90)
T ss_dssp EEESCCCCCC
T ss_pred EEECCCCCCC
Confidence 9999875443
No 126
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.6e-18 Score=117.76 Aligned_cols=81 Identities=20% Similarity=0.456 Sum_probs=74.4
Q ss_pred CCCCCeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEEEEE
Q 030227 5 SNSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFA 84 (181)
Q Consensus 5 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i~v~ 84 (181)
..+.++|||+|||+.+++++|+++|+.||.|..|.++.+ +|||||+|.+.++|+.|+..||+. .+.|+.|+|.
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~l~v~ 94 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGT-TIEGHVVKCY 94 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTC-EETTEECEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCC-EECCcEEEEE
Confidence 356889999999999999999999999999999999875 689999999999999999999998 9999999999
Q ss_pred ecCCCCCC
Q 030227 85 LSGQDKNT 92 (181)
Q Consensus 85 ~a~~~~~~ 92 (181)
|+.+....
T Consensus 95 ~a~~~~~~ 102 (109)
T 1x4g_A 95 WGKESPDM 102 (109)
T ss_dssp CCCCCCSS
T ss_pred ecCCCCCC
Confidence 99875443
No 127
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2.5e-19 Score=120.62 Aligned_cols=82 Identities=20% Similarity=0.222 Sum_probs=74.8
Q ss_pred CCCCCeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEEEEE
Q 030227 5 SNSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFA 84 (181)
Q Consensus 5 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i~v~ 84 (181)
..+.++|||+|||+++++++|+++|+.||. ..|+|+.++ +++++|||||+|.+.++|++||+ +|+. .|.++.|+|.
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~-~~~gr~i~V~ 87 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKA-NMQHRYVELF 87 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSC-CSSSSCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCC-eECCcEEEEE
Confidence 456789999999999999999999999994 599999997 89999999999999999999996 7997 9999999999
Q ss_pred ecCCCC
Q 030227 85 LSGQDK 90 (181)
Q Consensus 85 ~a~~~~ 90 (181)
++.+..
T Consensus 88 ~~~~~~ 93 (102)
T 1wez_A 88 LNSTAG 93 (102)
T ss_dssp EECCCC
T ss_pred ECCCCC
Confidence 987643
No 128
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=7.4e-19 Score=117.90 Aligned_cols=84 Identities=23% Similarity=0.311 Sum_probs=76.0
Q ss_pred CCCCCeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEEEEE
Q 030227 5 SNSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFA 84 (181)
Q Consensus 5 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i~v~ 84 (181)
..+.++|||+|||+++++++|+++|+.|+ .+.++.++.+++++|||||+|.+.++|+.||+.||+. .|.|+.|+|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~-~~~g~~l~V~ 87 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDG-EIDGNKVTLD 87 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTC-EETTEECEEE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCC-eECCeEEEEE
Confidence 36688999999999999999999999773 6778888888999999999999999999999999998 9999999999
Q ss_pred ecCCCCCC
Q 030227 85 LSGQDKNT 92 (181)
Q Consensus 85 ~a~~~~~~ 92 (181)
++++....
T Consensus 88 ~a~~~~~~ 95 (102)
T 2fc8_A 88 WAKPKGEG 95 (102)
T ss_dssp ECCCCCSS
T ss_pred EecCCCCC
Confidence 99875443
No 129
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.79 E-value=3.3e-20 Score=124.43 Aligned_cols=84 Identities=21% Similarity=0.345 Sum_probs=75.9
Q ss_pred CCCCeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEEEEEe
Q 030227 6 NSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFAL 85 (181)
Q Consensus 6 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i~v~~ 85 (181)
.+.++|||+|||+++++++|+++|+.||.|.. .++.++.+++++|||||+|.+.++|+.||+ ||+. .+.|+.|+|.+
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~-~~~g~~l~V~~ 91 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGL-KVFGNEIKLEK 91 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGC-CBTTBCCEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCc-EECCcEEEEEE
Confidence 46789999999999999999999999998887 667777789999999999999999999999 9998 99999999999
Q ss_pred cCCCCCC
Q 030227 86 SGQDKNT 92 (181)
Q Consensus 86 a~~~~~~ 92 (181)
+.+....
T Consensus 92 a~~~~~~ 98 (101)
T 1fj7_A 92 PKGRDGT 98 (101)
T ss_dssp CSCCCCS
T ss_pred cCCCCCC
Confidence 9775443
No 130
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.79 E-value=2.5e-19 Score=137.13 Aligned_cols=81 Identities=20% Similarity=0.294 Sum_probs=76.5
Q ss_pred CCCeEEEcCCCCcCcHHHHHHHHHhcC--CeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEEEEE
Q 030227 7 SGCNVYIGNLDEKVSERVLYDILIQAG--RVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFA 84 (181)
Q Consensus 7 ~~~~l~V~nLp~~~te~~l~~~f~~~G--~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i~v~ 84 (181)
..++|||+|||+++++++|+++|+.|| .|..|+|+.++.+++++|||||+|.+.++|++||+.||+. .|.|+.|+|.
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~-~~~Gr~l~V~ 145 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKR-ELHGQNPVVT 145 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTS-CBTTBCCEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCC-eECCEEeEEE
Confidence 567899999999999999999999999 9999999999999999999999999999999999999998 9999999999
Q ss_pred ecCC
Q 030227 85 LSGQ 88 (181)
Q Consensus 85 ~a~~ 88 (181)
++.+
T Consensus 146 ~a~~ 149 (229)
T 3q2s_C 146 PVNK 149 (229)
T ss_dssp ECCH
T ss_pred ECCC
Confidence 9865
No 131
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.79 E-value=4.4e-19 Score=117.89 Aligned_cols=82 Identities=27% Similarity=0.538 Sum_probs=75.1
Q ss_pred CCCCCeEEEcCCCCcCcHHHHH----HHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeE
Q 030227 5 SNSGCNVYIGNLDEKVSERVLY----DILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRT 80 (181)
Q Consensus 5 ~~~~~~l~V~nLp~~~te~~l~----~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~ 80 (181)
..++++|||+|||+++++++|+ ++|++||.|..+.++. ++.++|||||+|.+.++|+.|++.||+. .+.|+.
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~-~~~g~~ 80 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGF-PFYDKP 80 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTC-EETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCC-EECCcE
Confidence 4678999999999999999999 9999999999999874 4678899999999999999999999998 999999
Q ss_pred EEEEecCCCC
Q 030227 81 LRFALSGQDK 90 (181)
Q Consensus 81 i~v~~a~~~~ 90 (181)
|+|.++.++.
T Consensus 81 l~v~~a~~~~ 90 (97)
T 1nu4_A 81 MRIQYAKTDS 90 (97)
T ss_dssp CEEEECSSCC
T ss_pred EEEEEccCCC
Confidence 9999997744
No 132
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=2.5e-18 Score=113.30 Aligned_cols=80 Identities=21% Similarity=0.307 Sum_probs=72.7
Q ss_pred CCCCCCeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEEEE
Q 030227 4 NSNSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRF 83 (181)
Q Consensus 4 ~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i~v 83 (181)
...+.++|||+|||+++++++|+++|++||.|..+.+++ +||||+|.+.++|+.|++.||+. .+.|+.|+|
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~-~~~g~~l~V 76 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNT-EFQGKRMHV 76 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTE-EETTEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCC-eeCCcEEEE
Confidence 346688999999999999999999999999999999874 39999999999999999999997 999999999
Q ss_pred EecCCCCCC
Q 030227 84 ALSGQDKNT 92 (181)
Q Consensus 84 ~~a~~~~~~ 92 (181)
.++.+....
T Consensus 77 ~~a~~~~~~ 85 (92)
T 2dgt_A 77 QLSTSRLRT 85 (92)
T ss_dssp EESSCCCSC
T ss_pred EEccCCCCC
Confidence 999875444
No 133
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.79 E-value=4.7e-18 Score=114.31 Aligned_cols=79 Identities=16% Similarity=0.308 Sum_probs=72.2
Q ss_pred CCCCeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEEEEEe
Q 030227 6 NSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFAL 85 (181)
Q Consensus 6 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i~v~~ 85 (181)
.+.++|||+|||+++++++|+++|++||.|..|.+++ +||||+|.+.++|+.||+.||+. .+.|+.|+|.+
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~-~~~g~~l~v~~ 79 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK--------DYAFIHFDERDGAVKAMEEMNGK-DLEGENIEIVF 79 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESSHHHHHHHHHHHTTE-EETTEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC--------CEEEEEeCCHHHHHHHHHHHCCC-ccCCCEEEEEE
Confidence 5578999999999999999999999999999999863 59999999999999999999998 99999999999
Q ss_pred cCCCCCCC
Q 030227 86 SGQDKNTQ 93 (181)
Q Consensus 86 a~~~~~~~ 93 (181)
+.+.....
T Consensus 80 a~~~~~~~ 87 (103)
T 2dgu_A 80 AKPPDQKR 87 (103)
T ss_dssp CCCCCCCC
T ss_pred cCCCcccc
Confidence 98755543
No 134
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.79 E-value=7e-19 Score=120.57 Aligned_cols=83 Identities=25% Similarity=0.368 Sum_probs=76.3
Q ss_pred CCCCCCeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEEEE
Q 030227 4 NSNSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRF 83 (181)
Q Consensus 4 ~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i~v 83 (181)
++.++++|||+|||+.+++++|+++|+.||.|..|.++.+ +.++|||||+|.+.++|+.|+..||+. .+.|+.|+|
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~-~~~g~~l~v 79 (115)
T 3lqv_A 4 PPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGF-NVSNRYLVV 79 (115)
T ss_dssp CTTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTC-BSSSCBCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCC-EECCeEEEE
Confidence 4567899999999999999999999999999999999875 456999999999999999999999998 999999999
Q ss_pred EecCCCC
Q 030227 84 ALSGQDK 90 (181)
Q Consensus 84 ~~a~~~~ 90 (181)
.++.+..
T Consensus 80 ~~a~~~~ 86 (115)
T 3lqv_A 80 LYYNANR 86 (115)
T ss_dssp EECCHHH
T ss_pred EEecCCh
Confidence 9997643
No 135
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.78 E-value=1.7e-19 Score=116.28 Aligned_cols=73 Identities=27% Similarity=0.436 Sum_probs=67.5
Q ss_pred CCeEEEcCCCCcC------cHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCe-E
Q 030227 8 GCNVYIGNLDEKV------SERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNR-T 80 (181)
Q Consensus 8 ~~~l~V~nLp~~~------te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~-~ 80 (181)
+++|||+|||+.+ ++++|+++|++||.|..+.+++ .+|+++|||||+|.+.++|+.|++.|||. .++|+ +
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~--~~g~~~g~afV~f~~~~~A~~Ai~~lng~-~~~g~~~ 77 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE--EDGKTKGYIFLEYASPAHAVDAVKNADGY-KLDKQHT 77 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCC--BTTBCCCEEEEEESSHHHHHHHHTTSSSC-CCSSSSC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecC--CCCcEeEEEEEEECCHHHHHHHHHHhcCc-ccCCcee
Confidence 4789999999999 7899999999999999999883 58999999999999999999999999998 99998 8
Q ss_pred EEE
Q 030227 81 LRF 83 (181)
Q Consensus 81 i~v 83 (181)
|+|
T Consensus 78 l~V 80 (81)
T 2krb_A 78 FRV 80 (81)
T ss_dssp CCC
T ss_pred EEe
Confidence 775
No 136
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.2e-19 Score=124.30 Aligned_cols=84 Identities=25% Similarity=0.438 Sum_probs=74.2
Q ss_pred CCCCCeEEEcCCCCcCcHHHHHHHHHhcCCe----EEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeE
Q 030227 5 SNSGCNVYIGNLDEKVSERVLYDILIQAGRV----VDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRT 80 (181)
Q Consensus 5 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i----~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~ 80 (181)
..+.++|||+|||+++++++|+++|+.||.| ..+.+. +++++|||||+|.+.++|+.||+.||+. .+.|+.
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~----~g~~~g~afV~f~~~~~a~~Ai~~l~g~-~~~g~~ 96 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM----TGRMRGQAFITFPNKEIAWQALHLVNGY-KLYGKI 96 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE----CSSSCSEEEEECSSHHHHHHHHHHSTTC-BCSSCB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC----CCccceEEEEEECCHHHHHHHHHHhCCC-EeCCcE
Confidence 3567899999999999999999999999998 444443 7889999999999999999999999998 999999
Q ss_pred EEEEecCCCCCCC
Q 030227 81 LRFALSGQDKNTQ 93 (181)
Q Consensus 81 i~v~~a~~~~~~~ 93 (181)
|+|.++.+.....
T Consensus 97 l~v~~a~~~~~~~ 109 (115)
T 2cpx_A 97 LVIEFGKNKKQRS 109 (115)
T ss_dssp CEEEECCCCSCCC
T ss_pred EEEEEccCCCCCC
Confidence 9999998755443
No 137
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.78 E-value=1.5e-19 Score=114.55 Aligned_cols=75 Identities=19% Similarity=0.368 Sum_probs=70.9
Q ss_pred eEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEEEEEec
Q 030227 10 NVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFALS 86 (181)
Q Consensus 10 ~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i~v~~a 86 (181)
+|||+|||+++++++|+++|++||.|..+.++.++.++.++|||||+|.+.++|+.|++ +++. .+.|+.|+|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~-~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYH-NVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSC-CBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCC-eECCEEEEEEEC
Confidence 58999999999999999999999999999999998899999999999999999999999 4776 899999999875
No 138
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.78 E-value=5.5e-19 Score=118.38 Aligned_cols=77 Identities=23% Similarity=0.369 Sum_probs=71.4
Q ss_pred CCCCCeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEEEEE
Q 030227 5 SNSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFA 84 (181)
Q Consensus 5 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i~v~ 84 (181)
....++|||+|||.++++++|+++|+.||.|..+.++ +++|||||+|.+.++|+.|+..||+. .+.|+.|+|.
T Consensus 24 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~-~~~g~~l~V~ 96 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANF-PFQGRNLRTG 96 (101)
T ss_dssp CSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTC-EETTEECCCC
T ss_pred CCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCC-eECCeEEEEE
Confidence 4457899999999999999999999999999999987 35799999999999999999999998 9999999999
Q ss_pred ecCC
Q 030227 85 LSGQ 88 (181)
Q Consensus 85 ~a~~ 88 (181)
|+++
T Consensus 97 ~a~~ 100 (101)
T 2la4_A 97 WGKE 100 (101)
T ss_dssp BCCC
T ss_pred eccC
Confidence 9865
No 139
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.78 E-value=1.2e-19 Score=123.06 Aligned_cols=83 Identities=12% Similarity=0.084 Sum_probs=76.9
Q ss_pred CCCCCCCeEEEcCCCCcCcHHHHHHHHHhcCC---eEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCe
Q 030227 3 GNSNSGCNVYIGNLDEKVSERVLYDILIQAGR---VVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNR 79 (181)
Q Consensus 3 ~~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~---i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~ 79 (181)
......++|||+|||+++++++|+++|+.||. |..|.++.++. |+++|||||+|.+.++|+.||. +|+. .++|+
T Consensus 6 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~-~~~gr 82 (107)
T 2lmi_A 6 EEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRM-YMGQR 82 (107)
T ss_dssp CCCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTC-CSSSS
T ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcc-eeCCe
Confidence 34567889999999999999999999999998 89999999976 9999999999999999999999 9998 99999
Q ss_pred EEEEEecCC
Q 030227 80 TLRFALSGQ 88 (181)
Q Consensus 80 ~i~v~~a~~ 88 (181)
.|+|.++.+
T Consensus 83 ~i~V~~a~~ 91 (107)
T 2lmi_A 83 YVEVYEINN 91 (107)
T ss_dssp CCCCEECCH
T ss_pred EEEEEECCH
Confidence 999999865
No 140
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=2.3e-18 Score=111.62 Aligned_cols=76 Identities=17% Similarity=0.348 Sum_probs=70.3
Q ss_pred CCCCCeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHh-CCCeeeCCeEEEE
Q 030227 5 SNSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLF-SGIVTLYNRTLRF 83 (181)
Q Consensus 5 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l-~g~~~i~g~~i~v 83 (181)
..+.++|||+|||+++++++|+++|++||.|..+.++++ +|||||+|.+.++|+.|++.| ++. .+.|++|+|
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~-~~~g~~l~v 81 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKL-IVNGRRLNV 81 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTC-EETTEECCE
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCe-eECCCEEEE
Confidence 356789999999999999999999999999999999864 689999999999999999998 887 999999999
Q ss_pred EecC
Q 030227 84 ALSG 87 (181)
Q Consensus 84 ~~a~ 87 (181)
.|++
T Consensus 82 ~~ak 85 (85)
T 2ytc_A 82 KWGR 85 (85)
T ss_dssp EECC
T ss_pred EecC
Confidence 9974
No 141
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=1.4e-18 Score=116.04 Aligned_cols=80 Identities=21% Similarity=0.487 Sum_probs=73.5
Q ss_pred CCCCeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEEEEEe
Q 030227 6 NSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFAL 85 (181)
Q Consensus 6 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i~v~~ 85 (181)
.+.++|||+|||+.+++++|+++|++||.|..+.++++ +|||||+|.+.++|+.|++.||+. .+.|+.|+|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~-~~~g~~l~v~~ 85 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNM-PLRGKQLRVRF 85 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTC-CBTTBCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCC-EeCCceEEEEE
Confidence 56789999999999999999999999999999999754 689999999999999999999998 99999999999
Q ss_pred cCCCCCC
Q 030227 86 SGQDKNT 92 (181)
Q Consensus 86 a~~~~~~ 92 (181)
+.+....
T Consensus 86 a~~~~~~ 92 (99)
T 2cpj_A 86 ACHSASL 92 (99)
T ss_dssp SSCCSCC
T ss_pred cCCCCCC
Confidence 9875444
No 142
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.78 E-value=1.5e-18 Score=117.90 Aligned_cols=78 Identities=28% Similarity=0.373 Sum_probs=71.9
Q ss_pred CCCCCeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEEEEE
Q 030227 5 SNSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFA 84 (181)
Q Consensus 5 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i~v~ 84 (181)
..+.++|||+|||+++++++|+++|++||.|..+.++ +|||||+|.+.++|+.|++.||+. .++|+.|+|.
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~-~~~g~~l~V~ 98 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGK-SFANQPLEVV 98 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTC-EETTEECEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCC-EECCeEEEEE
Confidence 4568999999999999999999999999999999987 689999999999999999999998 9999999999
Q ss_pred ecCCCCC
Q 030227 85 LSGQDKN 91 (181)
Q Consensus 85 ~a~~~~~ 91 (181)
++.+...
T Consensus 99 ~a~~~~~ 105 (108)
T 2jvo_A 99 YSKLPAK 105 (108)
T ss_dssp SCSCCC-
T ss_pred EecCCCC
Confidence 9977543
No 143
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.78 E-value=3.5e-18 Score=113.87 Aligned_cols=76 Identities=24% Similarity=0.435 Sum_probs=70.8
Q ss_pred CCCCCeEEEcCCCC-cCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEEEE
Q 030227 5 SNSGCNVYIGNLDE-KVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRF 83 (181)
Q Consensus 5 ~~~~~~l~V~nLp~-~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i~v 83 (181)
..++++|||+|||+ ++++++|+++|+.||.|..+.+. +|||||+|.+.++|+.|++.||+. .+.|+.|+|
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~-~~~g~~l~V 89 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQE-MNFGKKLIL 89 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTS-EETTEECEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCC-EECCEEEEE
Confidence 45689999999998 99999999999999999999883 689999999999999999999998 999999999
Q ss_pred EecCCC
Q 030227 84 ALSGQD 89 (181)
Q Consensus 84 ~~a~~~ 89 (181)
.+++..
T Consensus 90 ~~a~~~ 95 (97)
T 2xnq_A 90 EVSSSN 95 (97)
T ss_dssp EECCCC
T ss_pred EecCCC
Confidence 998764
No 144
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.2e-19 Score=126.24 Aligned_cols=82 Identities=20% Similarity=0.182 Sum_probs=74.8
Q ss_pred CCCCCeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEEEEE
Q 030227 5 SNSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFA 84 (181)
Q Consensus 5 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i~v~ 84 (181)
..+.++|||+|||+++++++|+++|+.||.|..+.++.+..+|+++|||||+|.+.++|+.||. ||+. .|+|+.|+|.
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~-~~~gr~i~V~ 99 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQ-YMGNRFIQVH 99 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSB-CSTTSCBEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCC-eECCcEEEEE
Confidence 3457899999999999999999999999999886666666789999999999999999999999 9998 9999999999
Q ss_pred ecCC
Q 030227 85 LSGQ 88 (181)
Q Consensus 85 ~a~~ 88 (181)
++.+
T Consensus 100 ~a~~ 103 (124)
T 1wel_A 100 PITK 103 (124)
T ss_dssp EECH
T ss_pred ECCH
Confidence 9865
No 145
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.3e-18 Score=114.78 Aligned_cols=82 Identities=26% Similarity=0.361 Sum_probs=71.8
Q ss_pred CCCCCCCeEEEcCCCCcCcHHHHHHHHHhcCC-eEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCC-CeeeCCeE
Q 030227 3 GNSNSGCNVYIGNLDEKVSERVLYDILIQAGR-VVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSG-IVTLYNRT 80 (181)
Q Consensus 3 ~~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~-i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g-~~~i~g~~ 80 (181)
....+.++|||+|||+++++++|+++|++||. +..+.+. ++|||||+|.+.++|+.|++.||+ . .+.|+.
T Consensus 3 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~-~~~g~~ 74 (93)
T 2cqh_A 3 SGSSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKV-ELHGKI 74 (93)
T ss_dssp CCCCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTC-EETTEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCe-eECCEE
Confidence 45567899999999999999999999999999 5555552 468999999999999999999999 7 999999
Q ss_pred EEEEecCCCCCC
Q 030227 81 LRFALSGQDKNT 92 (181)
Q Consensus 81 i~v~~a~~~~~~ 92 (181)
|+|.++.+....
T Consensus 75 l~v~~a~~~~~~ 86 (93)
T 2cqh_A 75 MEVDYSVSKKLR 86 (93)
T ss_dssp CEEEECCCCCCC
T ss_pred EEEEEccCcccc
Confidence 999999875443
No 146
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=2e-18 Score=117.57 Aligned_cols=77 Identities=14% Similarity=0.137 Sum_probs=71.9
Q ss_pred CCeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEEEEEecC
Q 030227 8 GCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFALSG 87 (181)
Q Consensus 8 ~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i~v~~a~ 87 (181)
..+|||+|||+++++++|+++|+.| .|..|.|+.++. |+++|||||+|.+.++|++|| .+|+. .|+|+.|.|..+.
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~-~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRM-LMIQRYVEVSPAT 91 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTE-EETTEEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCC-eECCeEEEEEECC
Confidence 4689999999999999999999999 899999999975 999999999999999999999 59997 9999999999875
Q ss_pred C
Q 030227 88 Q 88 (181)
Q Consensus 88 ~ 88 (181)
+
T Consensus 92 ~ 92 (109)
T 2dnn_A 92 E 92 (109)
T ss_dssp H
T ss_pred c
Confidence 4
No 147
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=1.5e-18 Score=115.49 Aligned_cols=79 Identities=30% Similarity=0.442 Sum_probs=71.2
Q ss_pred CCCCeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEEEEEe
Q 030227 6 NSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFAL 85 (181)
Q Consensus 6 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i~v~~ 85 (181)
...++|||+|||+++++++|+++|++||.|. +.++. +.++|||||+|.+.++|+.|++.||+. .+.|+.|+|.+
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~l~V~~ 90 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW----QGPRRRAFLHYPDSAAAQQAVSCLQGL-RLGTDTLRVAL 90 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE----ETTTTEEEEECSSHHHHHHHHHHHTTC-CSSSSCCEEEE
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc----CCCCcEEEEEECCHHHHHHHHHHhCCC-EECCcEEEEEE
Confidence 3478999999999999999999999999986 66654 468899999999999999999999998 99999999999
Q ss_pred cCCCC
Q 030227 86 SGQDK 90 (181)
Q Consensus 86 a~~~~ 90 (181)
+.+++
T Consensus 91 a~~~~ 95 (97)
T 2e5j_A 91 ARQQR 95 (97)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 97754
No 148
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1e-17 Score=111.78 Aligned_cols=77 Identities=23% Similarity=0.267 Sum_probs=70.8
Q ss_pred CCCCeEEEcCCCCcCcHHHHHHHHHhc--CCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEEEE
Q 030227 6 NSGCNVYIGNLDEKVSERVLYDILIQA--GRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRF 83 (181)
Q Consensus 6 ~~~~~l~V~nLp~~~te~~l~~~f~~~--G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i~v 83 (181)
.+.++|||+|||+.+++++|+++|++| |.|..+.++ +|||||+|.+.++|+.|+..||+. .+.|+.|+|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~-~~~g~~l~v 83 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGK-VLDGSPIEV 83 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSE-EETTEEEEE
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCC-EeCCcEEEE
Confidence 567899999999999999999999999 899998874 469999999999999999999998 999999999
Q ss_pred EecCCCCC
Q 030227 84 ALSGQDKN 91 (181)
Q Consensus 84 ~~a~~~~~ 91 (181)
.++.+...
T Consensus 84 ~~a~~~~~ 91 (99)
T 2cpd_A 84 TLAKPVDK 91 (99)
T ss_dssp ECCCCCCC
T ss_pred EECCCCCC
Confidence 99987544
No 149
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.77 E-value=3.2e-18 Score=116.42 Aligned_cols=78 Identities=32% Similarity=0.474 Sum_probs=71.1
Q ss_pred CCCCeEEEcCCCCc-CcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEEEEE
Q 030227 6 NSGCNVYIGNLDEK-VSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFA 84 (181)
Q Consensus 6 ~~~~~l~V~nLp~~-~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i~v~ 84 (181)
...++|||+|||+. +++++|+++|++||.|..|.+ ++|||||+|.+.++|+.|++.||+. .+.|+.|+|.
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~-~~~g~~l~V~ 95 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGR-VLAGQTLDIN 95 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTC-EETTEECCEE
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCC-EECCeEEEEE
Confidence 34589999999999 999999999999999999988 4689999999999999999999998 9999999999
Q ss_pred ecCCCCCC
Q 030227 85 LSGQDKNT 92 (181)
Q Consensus 85 ~a~~~~~~ 92 (181)
++...+..
T Consensus 96 ~a~~~~~~ 103 (110)
T 1wf1_A 96 MAGEPKPD 103 (110)
T ss_dssp ESCCCCSC
T ss_pred ECCCCCCC
Confidence 99764443
No 150
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.77 E-value=5e-18 Score=122.30 Aligned_cols=83 Identities=23% Similarity=0.420 Sum_probs=78.5
Q ss_pred CCCCCeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEEEEE
Q 030227 5 SNSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFA 84 (181)
Q Consensus 5 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i~v~ 84 (181)
..+.++|||+|||..+++++|+++|+.||.|..+.++.++.++.++|||||+|.+.++|..|+..||+. .++|+.|+|.
T Consensus 84 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~-~~~g~~i~v~ 162 (166)
T 3md3_A 84 SDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQ-DLNGRPLRIN 162 (166)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTC-EETTEECEEE
T ss_pred CCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCC-ccCCcEEEEE
Confidence 355789999999999999999999999999999999999889999999999999999999999999998 9999999999
Q ss_pred ecCC
Q 030227 85 LSGQ 88 (181)
Q Consensus 85 ~a~~ 88 (181)
||++
T Consensus 163 ~a~~ 166 (166)
T 3md3_A 163 WAAK 166 (166)
T ss_dssp ESCC
T ss_pred ecCC
Confidence 9853
No 151
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.63 E-value=2.8e-20 Score=127.86 Aligned_cols=87 Identities=22% Similarity=0.358 Sum_probs=80.7
Q ss_pred CCCCCeEEEcCCCCcCcHHHHHHHHHhcCCeEE--------EEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeee
Q 030227 5 SNSGCNVYIGNLDEKVSERVLYDILIQAGRVVD--------LYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTL 76 (181)
Q Consensus 5 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~--------~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i 76 (181)
..+.++|||+|||+++++++|+++|+.||.|.. +.++.++.+++++|||||+|.+.++|+.||+.||+. .+
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~-~~ 82 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGK-EF 82 (116)
Confidence 456889999999999999999999999999998 899999888999999999999999999999999998 99
Q ss_pred CCeEEEEEecCCCCCC
Q 030227 77 YNRTLRFALSGQDKNT 92 (181)
Q Consensus 77 ~g~~i~v~~a~~~~~~ 92 (181)
.|+.|+|.++.+....
T Consensus 83 ~g~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 83 SGNPIKVSFATRRADF 98 (116)
Confidence 9999999999875444
No 152
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.77 E-value=5.5e-19 Score=118.58 Aligned_cols=81 Identities=20% Similarity=0.377 Sum_probs=75.2
Q ss_pred CCCCeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEEEEEe
Q 030227 6 NSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFAL 85 (181)
Q Consensus 6 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i~v~~ 85 (181)
.+.++|||+|||+++++++|+++|+.||.|..+.++.++ +++++|||||+|.+.++|+.|+. ++. .++|+.|.|.+
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~-~~~g~~l~v~~ 82 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQI-NFHGKKLKLGP 82 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCC-EETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCC-eECCEEEEEEE
Confidence 456899999999999999999999999999999999997 89999999999999999999999 886 99999999999
Q ss_pred cCCCC
Q 030227 86 SGQDK 90 (181)
Q Consensus 86 a~~~~ 90 (181)
+.+..
T Consensus 83 a~~~~ 87 (102)
T 2xs2_A 83 AIRKQ 87 (102)
T ss_dssp EEECC
T ss_pred CCcCc
Confidence 86543
No 153
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=5.2e-18 Score=112.21 Aligned_cols=80 Identities=21% Similarity=0.256 Sum_probs=70.6
Q ss_pred CCCCCCeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEEEE
Q 030227 4 NSNSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRF 83 (181)
Q Consensus 4 ~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i~v 83 (181)
.....++|||+|||+++++++|+++|++||.|..| +.++.+++ ||||+|.+.++|+.||. ||+. .++|+.|+|
T Consensus 4 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~-~~~g~~l~V 76 (94)
T 2e5g_A 4 GSSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQH-SLGGHRLRV 76 (94)
T ss_dssp CCTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCC-EETTEECCC
T ss_pred ccCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCe-EECCEEEEE
Confidence 44567899999999999999999999999999987 55555555 99999999999999999 9998 999999999
Q ss_pred EecCCCC
Q 030227 84 ALSGQDK 90 (181)
Q Consensus 84 ~~a~~~~ 90 (181)
.++.+..
T Consensus 77 ~~a~~~~ 83 (94)
T 2e5g_A 77 RPREQKE 83 (94)
T ss_dssp BCSCCSC
T ss_pred EECCcCC
Confidence 9886533
No 154
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.76 E-value=9.7e-19 Score=116.05 Aligned_cols=80 Identities=20% Similarity=0.326 Sum_probs=72.1
Q ss_pred CCCCCeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEEEEE
Q 030227 5 SNSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFA 84 (181)
Q Consensus 5 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i~v~ 84 (181)
..+.++|||+|||+.+++++|+++|+.||.|..+ ..++.++|||||+|.+.++|+.|+..||+. .+.|+.|+|.
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~l~v~ 86 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGA-EIDGRSVSLY 86 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEE-EETTEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCC-EECCeEEEEE
Confidence 3557899999999999999999999999987666 247889999999999999999999999997 9999999999
Q ss_pred ecCCCC
Q 030227 85 LSGQDK 90 (181)
Q Consensus 85 ~a~~~~ 90 (181)
++.+..
T Consensus 87 ~a~~~~ 92 (96)
T 1fjc_A 87 YTGEKG 92 (96)
T ss_dssp ECSSSC
T ss_pred EcCCCC
Confidence 997644
No 155
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.76 E-value=2e-18 Score=127.22 Aligned_cols=82 Identities=23% Similarity=0.378 Sum_probs=77.7
Q ss_pred CCCCeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEEEEEe
Q 030227 6 NSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFAL 85 (181)
Q Consensus 6 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i~v~~ 85 (181)
.++++|||+|||+.+++++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|+.||+.||+. .+.|+.|+|.+
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~-~l~Gr~l~V~~ 163 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGV-PLDGRPMDIQL 163 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTC-BCSSSBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCC-EECCEEEEEEE
Confidence 457899999999999999999999999999999999997 8999999999999999999999999998 99999999999
Q ss_pred cCCC
Q 030227 86 SGQD 89 (181)
Q Consensus 86 a~~~ 89 (181)
+...
T Consensus 164 a~~~ 167 (177)
T 2f3j_A 164 VASQ 167 (177)
T ss_dssp ESSG
T ss_pred ecCC
Confidence 8763
No 156
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.76 E-value=2.8e-18 Score=122.92 Aligned_cols=79 Identities=33% Similarity=0.542 Sum_probs=73.7
Q ss_pred CCCCeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEEEEEe
Q 030227 6 NSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFAL 85 (181)
Q Consensus 6 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i~v~~ 85 (181)
.+.++|||+|||+++++++|+++|++||.|..|.++.+ ++|||||+|.+.++|+.|+..||+. .+.|++|+|.+
T Consensus 71 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~l~v~~ 144 (150)
T 2i2y_A 71 PLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGR-TLCGCRVRVEL 144 (150)
T ss_dssp TTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSS-CSSSSCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCC-EECCeEEEEEE
Confidence 56789999999999999999999999999999999876 6799999999999999999999998 99999999999
Q ss_pred cCCCC
Q 030227 86 SGQDK 90 (181)
Q Consensus 86 a~~~~ 90 (181)
+.+.+
T Consensus 145 a~~~~ 149 (150)
T 2i2y_A 145 SNGEK 149 (150)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 97743
No 157
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=6e-18 Score=115.68 Aligned_cols=80 Identities=24% Similarity=0.335 Sum_probs=71.2
Q ss_pred CCCCCCeEEE--cCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeee-----
Q 030227 4 NSNSGCNVYI--GNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTL----- 76 (181)
Q Consensus 4 ~~~~~~~l~V--~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i----- 76 (181)
...++++||| |||++++++++|+++|++||.|..|.++. .+|||||+|.+.++|++|++.|||. .+
T Consensus 21 ~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~-~~~~~lg 93 (114)
T 2cq2_A 21 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGK-EVVDDLG 93 (114)
T ss_dssp CSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTC-EEECTTS
T ss_pred CCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCC-EEccccC
Confidence 4567899999 88999999999999999999999998864 3689999999999999999999998 77
Q ss_pred CCeEEEEEecCCCC
Q 030227 77 YNRTLRFALSGQDK 90 (181)
Q Consensus 77 ~g~~i~v~~a~~~~ 90 (181)
.|++|.|.++....
T Consensus 94 ~g~~l~v~~a~~~p 107 (114)
T 2cq2_A 94 QKITLYLNFVEKVQ 107 (114)
T ss_dssp CEEECEEEEESCCC
T ss_pred CCcEEEEEecccCc
Confidence 68899999987533
No 158
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.75 E-value=3.4e-19 Score=126.38 Aligned_cols=82 Identities=22% Similarity=0.242 Sum_probs=74.0
Q ss_pred CCCCCeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEEEEE
Q 030227 5 SNSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFA 84 (181)
Q Consensus 5 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i~v~ 84 (181)
....++|||+|||+++|+++|+++|++|| +..|.|+.++. ++++|||||+|.+.++|++|| .+|+. .|+|+.|+|.
T Consensus 43 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~-~l~gR~i~V~ 118 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRA-NMQHRYIELF 118 (139)
T ss_dssp --CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSC-SSSSCCCCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCC-EECCEEEEEE
Confidence 35678999999999999999999999999 77999999975 999999999999999999999 68997 9999999999
Q ss_pred ecCCCC
Q 030227 85 LSGQDK 90 (181)
Q Consensus 85 ~a~~~~ 90 (181)
++.+..
T Consensus 119 ~a~~~~ 124 (139)
T 2hgn_A 119 LNSTTG 124 (139)
T ss_dssp ECCCSC
T ss_pred ECCCCC
Confidence 887643
No 159
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.75 E-value=7.4e-19 Score=125.00 Aligned_cols=86 Identities=22% Similarity=0.308 Sum_probs=73.7
Q ss_pred CCCCCeEEEcCCCCcCcHHHHHHHHHhcCCeEEEE--Eec---CCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCe
Q 030227 5 SNSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLY--IPR---DKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNR 79 (181)
Q Consensus 5 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~--i~~---~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~ 79 (181)
..++++|||+|||+++++++|+++|+.||.|..+. ++. ...++.++|||||+|.+.++|+.||..||+. .+.|+
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~-~~~g~ 120 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGY-VLFGK 120 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTB-EETTE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCC-EeCCc
Confidence 45788999999999999999999999999887641 111 1246899999999999999999999999998 99999
Q ss_pred EEEEEecCCCCC
Q 030227 80 TLRFALSGQDKN 91 (181)
Q Consensus 80 ~i~v~~a~~~~~ 91 (181)
.|+|.++.+...
T Consensus 121 ~l~V~~a~~~~~ 132 (143)
T 3egn_A 121 PMVVQFARSARP 132 (143)
T ss_dssp ECEEEECCCSCC
T ss_pred EEEEEECCCCCC
Confidence 999999976443
No 160
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.75 E-value=1.7e-18 Score=120.68 Aligned_cols=79 Identities=23% Similarity=0.279 Sum_probs=72.0
Q ss_pred CCCCeEEEcCCCCcCcHHHHHHHHHhcCCeE--EEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEEEE
Q 030227 6 NSGCNVYIGNLDEKVSERVLYDILIQAGRVV--DLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRF 83 (181)
Q Consensus 6 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~--~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i~v 83 (181)
.+.++|||+|||+++++++|+++|+.| .|. .|.|+.++. |+++|||||+|.+.++|++||+. ++. .|+|+.|+|
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~-~~~-~l~gR~I~V 115 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGK-HKE-RIGHRYIEV 115 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTT-TTC-CBTTBCCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHH-CCC-EECCEEEEE
Confidence 457899999999999999999999999 677 899999976 99999999999999999999994 676 999999999
Q ss_pred EecCC
Q 030227 84 ALSGQ 88 (181)
Q Consensus 84 ~~a~~ 88 (181)
..+.+
T Consensus 116 ~~a~~ 120 (126)
T 2hgm_A 116 FKSSQ 120 (126)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 88754
No 161
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=1.3e-18 Score=118.81 Aligned_cols=82 Identities=21% Similarity=0.241 Sum_probs=71.9
Q ss_pred CCCCCeEEEcCCCCc-CcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCC-eeeCCeEEE
Q 030227 5 SNSGCNVYIGNLDEK-VSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGI-VTLYNRTLR 82 (181)
Q Consensus 5 ~~~~~~l~V~nLp~~-~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~-~~i~g~~i~ 82 (181)
..++++|||+|||++ +++++|+++|++||.|..|.+++ .+|||||+|.+.++|+.|++.|++. ..+.|++|+
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 467899999999998 99999999999999999999974 4689999999999999999988642 269999999
Q ss_pred EEecCCCCCC
Q 030227 83 FALSGQDKNT 92 (181)
Q Consensus 83 v~~a~~~~~~ 92 (181)
|.++......
T Consensus 96 V~~a~~~~~~ 105 (112)
T 1x4f_A 96 VDLSEKYKKL 105 (112)
T ss_dssp EEEECSCSSS
T ss_pred EEECcccccc
Confidence 9999764443
No 162
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.75 E-value=1.9e-18 Score=114.79 Aligned_cols=79 Identities=23% Similarity=0.412 Sum_probs=70.5
Q ss_pred CCCCCCeEEEcCCCC-cCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEEE
Q 030227 4 NSNSGCNVYIGNLDE-KVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLR 82 (181)
Q Consensus 4 ~~~~~~~l~V~nLp~-~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i~ 82 (181)
+..+.++|||+|||+ .+++++|+++|++||.|..+.+. +|||||+|.+.++|+.|+..||+. .+.|+.|+
T Consensus 6 ~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~-~~~g~~l~ 76 (96)
T 2kvi_A 6 NIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQE-MNFGKKLI 76 (96)
T ss_dssp ---CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCS-SCBTTTBC
T ss_pred cCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCC-eeCCcEEE
Confidence 346789999999998 99999999999999999999884 589999999999999999999998 99999999
Q ss_pred EEecCCCCC
Q 030227 83 FALSGQDKN 91 (181)
Q Consensus 83 v~~a~~~~~ 91 (181)
|.++.+...
T Consensus 77 V~~a~~~~~ 85 (96)
T 2kvi_A 77 LEVSSSNAR 85 (96)
T ss_dssp EEEEECCCC
T ss_pred EEEcCcCCC
Confidence 999976443
No 163
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=6.3e-18 Score=112.10 Aligned_cols=79 Identities=28% Similarity=0.315 Sum_probs=71.6
Q ss_pred CCCCeEEEcCCCCcCcHHHHHHHHHhcCCeEEE-EEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEEEEE
Q 030227 6 NSGCNVYIGNLDEKVSERVLYDILIQAGRVVDL-YIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFA 84 (181)
Q Consensus 6 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~-~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i~v~ 84 (181)
...++|||+|||+++++++|+++|+.||.|..+ .++.++.++ .|||+|.+.++|+.|+..||+. .+.|+.|+|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~-~~~g~~l~V~ 87 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGF-QLENFTLKVA 87 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTC-BCSSCBCEEE
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCC-EECCcEEEEE
Confidence 347899999999999999999999999999999 588776443 3999999999999999999998 9999999999
Q ss_pred ecCCC
Q 030227 85 LSGQD 89 (181)
Q Consensus 85 ~a~~~ 89 (181)
++.+.
T Consensus 88 ~a~~~ 92 (96)
T 2e44_A 88 YIPDE 92 (96)
T ss_dssp ECCCC
T ss_pred EcCcc
Confidence 99875
No 164
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.75 E-value=1.5e-17 Score=123.43 Aligned_cols=85 Identities=24% Similarity=0.424 Sum_probs=80.1
Q ss_pred CCCCeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEEEEEe
Q 030227 6 NSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFAL 85 (181)
Q Consensus 6 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i~v~~ 85 (181)
.+.++|||+|||+.+++++|+++|++||.|..+.++.++.++.++|||||+|.+.++|+.|++.||+. .++|+.|+|.+
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~l~v~~ 190 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGM-QLGDKKLLVQR 190 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTC-EETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCC-EECCEEEEEEE
Confidence 46789999999999999999999999999999999999889999999999999999999999999998 99999999999
Q ss_pred cCCCCC
Q 030227 86 SGQDKN 91 (181)
Q Consensus 86 a~~~~~ 91 (181)
+.+...
T Consensus 191 a~~~~~ 196 (198)
T 2yh0_A 191 ASVGAK 196 (198)
T ss_dssp SCCCCC
T ss_pred CCCCCC
Confidence 977543
No 165
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.74 E-value=1.3e-17 Score=121.09 Aligned_cols=81 Identities=23% Similarity=0.429 Sum_probs=77.0
Q ss_pred CCCCeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEEEEEe
Q 030227 6 NSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFAL 85 (181)
Q Consensus 6 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i~v~~ 85 (181)
...++|||+|||+.+++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|++|++.||+. .++|+.|+|.+
T Consensus 92 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~-~~~g~~l~V~~ 170 (172)
T 2g4b_A 92 PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGM-QLGDKKLLVQR 170 (172)
T ss_dssp TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTC-EETTEECEEEE
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCC-EECCeEEEEEe
Confidence 34689999999999999999999999999999999999889999999999999999999999999998 99999999999
Q ss_pred cC
Q 030227 86 SG 87 (181)
Q Consensus 86 a~ 87 (181)
|.
T Consensus 171 As 172 (172)
T 2g4b_A 171 AS 172 (172)
T ss_dssp CC
T ss_pred CC
Confidence 73
No 166
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.74 E-value=4.1e-18 Score=117.84 Aligned_cols=79 Identities=14% Similarity=0.205 Sum_probs=71.4
Q ss_pred CeEEEcCC----CCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCC----HHH----HHHHHH--HhCCCe
Q 030227 9 CNVYIGNL----DEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYES----EEI----ADYAIK--LFSGIV 74 (181)
Q Consensus 9 ~~l~V~nL----p~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~----~~~----a~~al~--~l~g~~ 74 (181)
++|||+|| |+.+++.+|+++|++||+|.++.++.|+.||.++|||||+|.+ +++ |..|+. .||+.
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~- 81 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGC- 81 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCE-
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCC-
Confidence 78999999 9999999999999999999999999999999999999999995 323 788888 78997
Q ss_pred eeCCeEEEEEecCC
Q 030227 75 TLYNRTLRFALSGQ 88 (181)
Q Consensus 75 ~i~g~~i~v~~a~~ 88 (181)
.|+|+.|+|..-..
T Consensus 82 ~I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 82 FIMGFKFEVILNKH 95 (136)
T ss_dssp EETTEEEEEEECCT
T ss_pred eecCcEEEEEECcc
Confidence 99999999998644
No 167
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.74 E-value=6.3e-18 Score=110.54 Aligned_cols=77 Identities=22% Similarity=0.308 Sum_probs=70.6
Q ss_pred CCCCeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEEEEEe
Q 030227 6 NSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFAL 85 (181)
Q Consensus 6 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i~v~~ 85 (181)
...++|||+|||+++++++|+++|++| .|..+.+. +++|||||+|.+.++|+.|++.||+. .+.|++|+|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~-~~~g~~l~V~~ 74 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQY-SFRGKDLIVQL 74 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTE-EETTEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCC-eECCcEEEEEE
Confidence 357899999999999999999999999 99999884 57899999999999999999999997 99999999999
Q ss_pred cCCCC
Q 030227 86 SGQDK 90 (181)
Q Consensus 86 a~~~~ 90 (181)
+..+.
T Consensus 75 a~~~~ 79 (88)
T 1wg1_A 75 QPTDA 79 (88)
T ss_dssp CCCCC
T ss_pred cCCCc
Confidence 86543
No 168
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.74 E-value=1.2e-17 Score=138.87 Aligned_cols=83 Identities=20% Similarity=0.317 Sum_probs=78.8
Q ss_pred CCCCeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEEEEEe
Q 030227 6 NSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFAL 85 (181)
Q Consensus 6 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i~v~~ 85 (181)
.+.++|||+|||+.+|+++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|+.||..||+. .|.|+.|.|.+
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~-~i~gr~i~V~~ 178 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGK-KIDGRRVLVDV 178 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCC-EECCEEEEEEE
Confidence 45689999999999999999999999999999999999889999999999999999999999999998 99999999999
Q ss_pred cCCC
Q 030227 86 SGQD 89 (181)
Q Consensus 86 a~~~ 89 (181)
+.+.
T Consensus 179 a~~~ 182 (437)
T 3pgw_S 179 ERGR 182 (437)
T ss_pred eCCC
Confidence 9763
No 169
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=5.3e-18 Score=115.75 Aligned_cols=76 Identities=14% Similarity=0.091 Sum_probs=70.3
Q ss_pred CCCeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEEEEEec
Q 030227 7 SGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFALS 86 (181)
Q Consensus 7 ~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i~v~~a 86 (181)
..++|||+|||+++++++|+++|++||.|..|.++. .+|||||+|.+.++|+.||+.||+. .+.|+.|+|.|+
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~-~~~g~~l~V~~a 81 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYS-KFHHVPLYLEWA 81 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTC-BSSSSBCEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCC-EECCeEEEEEEC
Confidence 467999999999999999999999999999998864 5689999999999999999999998 999999999999
Q ss_pred CCC
Q 030227 87 GQD 89 (181)
Q Consensus 87 ~~~ 89 (181)
...
T Consensus 82 ~~~ 84 (111)
T 1whx_A 82 PIG 84 (111)
T ss_dssp ETT
T ss_pred CCC
Confidence 663
No 170
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=3e-18 Score=119.06 Aligned_cols=80 Identities=19% Similarity=0.167 Sum_probs=72.9
Q ss_pred CCCCeEEEcCCCCcCcHHHHHHHHHhcCCe----EEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEE
Q 030227 6 NSGCNVYIGNLDEKVSERVLYDILIQAGRV----VDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTL 81 (181)
Q Consensus 6 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i----~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i 81 (181)
.+..+|||+|||+++|+++|+++|++||.| ..|.|+.++ +|+++|||||+|.+.++|++||+. |+. .|+++.|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~-~~~-~l~gR~i 97 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRK-HKD-LLGKRYI 97 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTT-TTE-ESSSCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHh-CCC-eeCCeEE
Confidence 457899999999999999999999999975 689999984 899999999999999999999995 887 9999999
Q ss_pred EEEecCC
Q 030227 82 RFALSGQ 88 (181)
Q Consensus 82 ~v~~a~~ 88 (181)
.|..+.+
T Consensus 98 ~V~~a~~ 104 (123)
T 2dha_A 98 ELFRSTA 104 (123)
T ss_dssp CCEEECH
T ss_pred EEEECCH
Confidence 9998754
No 171
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=1e-17 Score=114.71 Aligned_cols=81 Identities=21% Similarity=0.304 Sum_probs=71.4
Q ss_pred CCCCCCeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCC---CCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeE
Q 030227 4 NSNSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKET---DKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRT 80 (181)
Q Consensus 4 ~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~---~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~ 80 (181)
.....++|||+|||+++++++|+++|++||.|. +.++.++.+ |+++|||||+|.+.++|+.||+.|+ .++|+.
T Consensus 4 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~---~~~G~~ 79 (114)
T 2dnl_A 4 GSSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL---EEDGKL 79 (114)
T ss_dssp SSSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE---EETTEE
T ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh---hcCCcE
Confidence 445689999999999999999999999999999 888888766 7999999999999999999999884 578888
Q ss_pred EEEEecCC
Q 030227 81 LRFALSGQ 88 (181)
Q Consensus 81 i~v~~a~~ 88 (181)
+.+..+..
T Consensus 80 ~~~~~~~~ 87 (114)
T 2dnl_A 80 YLCVSSPT 87 (114)
T ss_dssp EEEECCSS
T ss_pred EEeccCCC
Confidence 88776543
No 172
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.74 E-value=1.6e-17 Score=124.84 Aligned_cols=83 Identities=20% Similarity=0.364 Sum_probs=78.9
Q ss_pred CCCCeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEEEEEe
Q 030227 6 NSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFAL 85 (181)
Q Consensus 6 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i~v~~ 85 (181)
.+.++|||+|||.++++++|+++|+.||.|..+.++.++.+++++|||||+|.+.++|..|++.||+. .++|+.|+|.+
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~-~~~g~~i~V~~ 201 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLF-DLGGQYLRVGK 201 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC-BCSSSBCEEEE
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCC-EeCCcEEEEEE
Confidence 35689999999999999999999999999999999999889999999999999999999999999998 99999999999
Q ss_pred cCCC
Q 030227 86 SGQD 89 (181)
Q Consensus 86 a~~~ 89 (181)
+.+.
T Consensus 202 a~~~ 205 (216)
T 2qfj_A 202 AVTP 205 (216)
T ss_dssp CSSC
T ss_pred ecCC
Confidence 9764
No 173
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=4e-17 Score=108.54 Aligned_cols=79 Identities=23% Similarity=0.396 Sum_probs=70.9
Q ss_pred CCCCCeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEEEEE
Q 030227 5 SNSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFA 84 (181)
Q Consensus 5 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i~v~ 84 (181)
..+.++|||+|| ++++++|+++|++||.|..|.+. .++|||||+|.+.++|+.||..||+. .+.|+.|+|.
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~-~~~g~~l~v~ 82 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGT-QVESVQLKVN 82 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTE-EETTEEEEEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCC-eECCeEEEEE
Confidence 356789999996 89999999999999999999884 46789999999999999999999997 9999999999
Q ss_pred ecCCCCCC
Q 030227 85 LSGQDKNT 92 (181)
Q Consensus 85 ~a~~~~~~ 92 (181)
++.+....
T Consensus 83 ~a~~~~~~ 90 (97)
T 1x5p_A 83 IARKQPML 90 (97)
T ss_dssp CCSSCCCC
T ss_pred ECCCCCCC
Confidence 99775443
No 174
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=1.5e-17 Score=109.01 Aligned_cols=78 Identities=15% Similarity=0.290 Sum_probs=68.4
Q ss_pred CCCCCCCe-EEEcCCCCcCcHHH----HHHHHHhc-CCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeee
Q 030227 3 GNSNSGCN-VYIGNLDEKVSERV----LYDILIQA-GRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTL 76 (181)
Q Consensus 3 ~~~~~~~~-l~V~nLp~~~te~~----l~~~f~~~-G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i 76 (181)
...+|+.+ |||+|||+.+++++ |+++|++| |+|.+| ++ |+|||.|.+.++|+.|++.|||. .+
T Consensus 3 ~~~~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~-~l 71 (96)
T 2diu_A 3 SGSSGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENE-DV 71 (96)
T ss_dssp SSCCCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTC-CS
T ss_pred CCCCCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCC-cc
Confidence 44567777 99999999999988 56899999 499998 23 99999999999999999999998 99
Q ss_pred CCeEEEEEecCCCCC
Q 030227 77 YNRTLRFALSGQDKN 91 (181)
Q Consensus 77 ~g~~i~v~~a~~~~~ 91 (181)
.|++|+|.+|+....
T Consensus 72 ~gr~i~v~~A~~~sd 86 (96)
T 2diu_A 72 FGNRIIVSFTPKNRE 86 (96)
T ss_dssp SSSCCEEESSCCSCC
T ss_pred CCceEEEEecCCCcc
Confidence 999999999976443
No 175
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.73 E-value=1.8e-17 Score=107.82 Aligned_cols=74 Identities=28% Similarity=0.515 Sum_probs=68.0
Q ss_pred CCCCCCeEEEcCCCCcCcHHHHHHHHHhc----C-------CeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCC
Q 030227 4 NSNSGCNVYIGNLDEKVSERVLYDILIQA----G-------RVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSG 72 (181)
Q Consensus 4 ~~~~~~~l~V~nLp~~~te~~l~~~f~~~----G-------~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g 72 (181)
++.+.++|||+|||+++++++|+++|++| | .|.++.+.++ +|||||+|.+.++|+.|+ .||+
T Consensus 2 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g 74 (87)
T 2hzc_A 2 PLGSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDG 74 (87)
T ss_dssp CSGGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCC
Confidence 45668999999999999999999999999 8 8999998754 699999999999999999 8999
Q ss_pred CeeeCCeEEEEEe
Q 030227 73 IVTLYNRTLRFAL 85 (181)
Q Consensus 73 ~~~i~g~~i~v~~ 85 (181)
. .+.|+.|+|+.
T Consensus 75 ~-~~~g~~l~V~r 86 (87)
T 2hzc_A 75 I-IFQGQSLKIRR 86 (87)
T ss_dssp C-EETTEECEEEC
T ss_pred C-EECCeEEEEeC
Confidence 8 99999999975
No 176
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.72 E-value=3.6e-17 Score=107.32 Aligned_cols=77 Identities=23% Similarity=0.515 Sum_probs=63.6
Q ss_pred CCCCCeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCC-eeeCCeEEEE
Q 030227 5 SNSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGI-VTLYNRTLRF 83 (181)
Q Consensus 5 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~-~~i~g~~i~v 83 (181)
..+.++|||+|||+++++++|+++|++||.|.+|.++.+ ++|||||+|.+.++|++ +++. +.+.|+.|.|
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v 78 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHI 78 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEE
Confidence 466899999999999999999999999999999999874 78999999999999984 4454 3567999999
Q ss_pred EecCCCC
Q 030227 84 ALSGQDK 90 (181)
Q Consensus 84 ~~a~~~~ 90 (181)
.++.+..
T Consensus 79 ~~a~~k~ 85 (89)
T 3d2w_A 79 SNAEPKH 85 (89)
T ss_dssp EECC---
T ss_pred EEcCCCC
Confidence 9997643
No 177
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.72 E-value=3.8e-17 Score=121.04 Aligned_cols=85 Identities=20% Similarity=0.330 Sum_probs=75.3
Q ss_pred CCCeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEEEEEec
Q 030227 7 SGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFALS 86 (181)
Q Consensus 7 ~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i~v~~a 86 (181)
+.++|||+|||+++++++|+++|+.||.|..+.++.++.++.++|||||+|.+.++|.+||.. ++. .++|+.|.|.++
T Consensus 103 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~-~~~G~~i~v~~a 180 (196)
T 1l3k_A 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYH-TVNGHNCEVRKA 180 (196)
T ss_dssp CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCC-EETTEECEEEEC
T ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCc-EECCEEEEEEec
Confidence 468999999999999999999999999999999999988999999999999999999999985 787 999999999999
Q ss_pred CCCCCCC
Q 030227 87 GQDKNTQ 93 (181)
Q Consensus 87 ~~~~~~~ 93 (181)
.++....
T Consensus 181 ~~k~~~~ 187 (196)
T 1l3k_A 181 LSKQEMA 187 (196)
T ss_dssp C------
T ss_pred CChhHhc
Confidence 8755543
No 178
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.72 E-value=1.1e-17 Score=120.98 Aligned_cols=81 Identities=21% Similarity=0.420 Sum_probs=76.5
Q ss_pred CCCeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEEEEEec
Q 030227 7 SGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFALS 86 (181)
Q Consensus 7 ~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i~v~~a 86 (181)
+.++|||+|||.++++++|+++|+.||.|..+.++.++.+|.++|||||+|.+.++|++|++ +++. .++|+.|+|.++
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~-~~~g~~i~V~~a 163 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFI-DFKDRKIEIKRA 163 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEE-CSSSSCEEEEEC
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCE-EeCCeEEEEeec
Confidence 36789999999999999999999999999999999998899999999999999999999998 8887 999999999999
Q ss_pred CCC
Q 030227 87 GQD 89 (181)
Q Consensus 87 ~~~ 89 (181)
.++
T Consensus 164 ~pk 166 (167)
T 2cjk_A 164 EPR 166 (167)
T ss_dssp CCC
T ss_pred CCC
Confidence 763
No 179
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.72 E-value=3.7e-17 Score=123.46 Aligned_cols=81 Identities=28% Similarity=0.518 Sum_probs=75.0
Q ss_pred CCCeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEEEEEec
Q 030227 7 SGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFALS 86 (181)
Q Consensus 7 ~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i~v~~a 86 (181)
..++|||+|||+++++++|+++|+.||.|..++|+.++ +.++|||||+|.+.++|++||+.||+. .|+|++|+|.++
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~-~~~g~~i~V~~a 178 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGM-LLNDRKVFVGRF 178 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTC-EETTEECEEEEC
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCC-EECCEEEEEEEc
Confidence 35789999999999999999999999999999999884 558999999999999999999999998 999999999999
Q ss_pred CCCC
Q 030227 87 GQDK 90 (181)
Q Consensus 87 ~~~~ 90 (181)
.++.
T Consensus 179 ~~~~ 182 (213)
T 4f02_A 179 KSRK 182 (213)
T ss_dssp CCHH
T ss_pred CCCc
Confidence 7643
No 180
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.72 E-value=6.7e-17 Score=112.87 Aligned_cols=75 Identities=27% Similarity=0.327 Sum_probs=68.0
Q ss_pred CeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceE-EEEEeCCHHHHHHHHHHhCCCeeeCC--eEEEEEe
Q 030227 9 CNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGF-AFVEYESEEIADYAIKLFSGIVTLYN--RTLRFAL 85 (181)
Q Consensus 9 ~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~-afV~f~~~~~a~~al~~l~g~~~i~g--~~i~v~~ 85 (181)
..|||+||++.+|+++|+++|++||.|.+|.+... .+|+ |||+|.+.++|+.|++.|||. .|.| +.|+|.+
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~-~i~g~~~~LrI~~ 102 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQ-NIYNACCTLRIDF 102 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTC-EEETTEEEEEEEE
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCC-eecCCCcEEEEEe
Confidence 46789999999999999999999999999988753 3577 999999999999999999998 8877 8999999
Q ss_pred cCCC
Q 030227 86 SGQD 89 (181)
Q Consensus 86 a~~~ 89 (181)
+++.
T Consensus 103 ak~~ 106 (130)
T 3zzy_A 103 SKLT 106 (130)
T ss_dssp CSCS
T ss_pred cCCC
Confidence 9764
No 181
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.72 E-value=4.3e-17 Score=117.95 Aligned_cols=77 Identities=25% Similarity=0.251 Sum_probs=69.4
Q ss_pred CCeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCC--eEEEEEe
Q 030227 8 GCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYN--RTLRFAL 85 (181)
Q Consensus 8 ~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g--~~i~v~~ 85 (181)
..+|||+||++.+++++|+++|++||.|..|.+... ..+|||||+|.+.++|+.|++.|||. .|.| +.|+|.|
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~-~i~g~g~~L~V~~ 120 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQ-NIYNACCTLRIDF 120 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTB-CSSSSCSCEEEEE
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCC-EecCCCcEEEEEE
Confidence 346899999999999999999999999999998643 36799999999999999999999998 8855 9999999
Q ss_pred cCCC
Q 030227 86 SGQD 89 (181)
Q Consensus 86 a~~~ 89 (181)
+++.
T Consensus 121 Ak~~ 124 (164)
T 1sjr_A 121 SKLT 124 (164)
T ss_dssp CSSS
T ss_pred ecCC
Confidence 9874
No 182
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.71 E-value=1.9e-17 Score=113.65 Aligned_cols=75 Identities=25% Similarity=0.322 Sum_probs=66.9
Q ss_pred CCCeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeE-----E
Q 030227 7 SGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRT-----L 81 (181)
Q Consensus 7 ~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~-----i 81 (181)
..++|||+|||+++++++|+++|++||.|..|.|+.+ |||||+|.+.++|+.||+.||+. .|+|+. |
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~-~~~gr~~~~~~i 86 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNT-KFRSHEGETAYI 86 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTC-BCCCTTSCCCBC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCC-EECCcEeeeEEE
Confidence 4689999999999999999999999999999999765 89999999999999999999998 999987 8
Q ss_pred EEEecCCC
Q 030227 82 RFALSGQD 89 (181)
Q Consensus 82 ~v~~a~~~ 89 (181)
+|..+.+.
T Consensus 87 ~v~~~~~~ 94 (115)
T 3beg_B 87 RVKVDGPR 94 (115)
T ss_dssp EEEECC--
T ss_pred EeccCCCC
Confidence 88877653
No 183
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.71 E-value=7.4e-17 Score=116.57 Aligned_cols=80 Identities=31% Similarity=0.467 Sum_probs=75.8
Q ss_pred CCCCeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCC--eEEEE
Q 030227 6 NSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYN--RTLRF 83 (181)
Q Consensus 6 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g--~~i~v 83 (181)
.+.++|||+|||..+++++|+++|++||.|..+.++.++.++.++|||||+|.+.++|..|++.||+. .+.| ++|+|
T Consensus 87 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~-~~~g~~~~l~V 165 (168)
T 1b7f_A 87 IKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNV-IPEGGSQPLSV 165 (168)
T ss_dssp TTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC-CCTTCSSCCEE
T ss_pred CCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCC-EecCCCeEEEE
Confidence 45789999999999999999999999999999999999888999999999999999999999999998 9977 89999
Q ss_pred Eec
Q 030227 84 ALS 86 (181)
Q Consensus 84 ~~a 86 (181)
.+|
T Consensus 166 ~~A 168 (168)
T 1b7f_A 166 RLA 168 (168)
T ss_dssp EEC
T ss_pred EeC
Confidence 886
No 184
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.70 E-value=1.9e-16 Score=109.93 Aligned_cols=77 Identities=26% Similarity=0.344 Sum_probs=67.7
Q ss_pred CCCCe--EEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceE-EEEEeCCHHHHHHHHHHhCCCeeeCC--eE
Q 030227 6 NSGCN--VYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGF-AFVEYESEEIADYAIKLFSGIVTLYN--RT 80 (181)
Q Consensus 6 ~~~~~--l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~-afV~f~~~~~a~~al~~l~g~~~i~g--~~ 80 (181)
.+++. |||+||++.+++++|+++|++||.|..|.+.. + .|+ |||+|.+.++|+.|++.|||. .|.| +.
T Consensus 21 ~ps~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~-~-----~Gf~aFVef~~~~~A~~A~~~LnG~-~i~g~~~~ 93 (124)
T 2e5i_A 21 GGNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK-R-----NGIQAMVEFESVLCAQKAKAALNGA-DIYAGCCT 93 (124)
T ss_dssp CCCSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEE-S-----SSEEEEEEESSHHHHHHHHHHHTTC-CCBTTBSE
T ss_pred CCCcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEe-C-----CCCEEEEEECCHHHHHHHHHHhCCC-EecCCCeE
Confidence 44554 57999999999999999999999999999864 2 275 999999999999999999998 8877 69
Q ss_pred EEEEecCCC
Q 030227 81 LRFALSGQD 89 (181)
Q Consensus 81 i~v~~a~~~ 89 (181)
|+|.+|++.
T Consensus 94 l~V~~Ak~~ 102 (124)
T 2e5i_A 94 LKIEYARPT 102 (124)
T ss_dssp EEEECCSCS
T ss_pred EEEEEecCC
Confidence 999999764
No 185
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=3.6e-17 Score=106.81 Aligned_cols=80 Identities=23% Similarity=0.429 Sum_probs=68.0
Q ss_pred CCCCCeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEEEEE
Q 030227 5 SNSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFA 84 (181)
Q Consensus 5 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i~v~ 84 (181)
+.+.++|||+|||+++++++|+++|++||.|..+.++.+ ++|||||+|.+.++|++|+.. .+.+.++.|+|.
T Consensus 2 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~---~~~~~g~~l~v~ 73 (88)
T 1wf0_A 2 SSGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE---DLIIKGISVHIS 73 (88)
T ss_dssp CSCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC---EEEETTEEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC---CceeCCEEEEEE
Confidence 346899999999999999999999999999999999764 789999999999999865332 246799999999
Q ss_pred ecCCCCCC
Q 030227 85 LSGQDKNT 92 (181)
Q Consensus 85 ~a~~~~~~ 92 (181)
++.+....
T Consensus 74 ~a~~~~~~ 81 (88)
T 1wf0_A 74 NAEPKHNS 81 (88)
T ss_dssp CCCCCCCC
T ss_pred ecCCCCCC
Confidence 99775443
No 186
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.69 E-value=1.4e-16 Score=114.83 Aligned_cols=80 Identities=21% Similarity=0.374 Sum_probs=74.6
Q ss_pred CCCCeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCe--EEEE
Q 030227 6 NSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNR--TLRF 83 (181)
Q Consensus 6 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~--~i~v 83 (181)
.+.++|||+|||..+++++|+++|+.||.|..+.++.++.+|.++|||||+|.+.++|..|++.|||. .+.|+ +|+|
T Consensus 86 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~-~~~g~~~~i~v 164 (167)
T 1fxl_A 86 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ-KPSGATEPITV 164 (167)
T ss_dssp GTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC-CCTTCSSCCEE
T ss_pred CCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCC-ccCCCccceEE
Confidence 35689999999999999999999999999999999999888999999999999999999999999998 99996 4888
Q ss_pred Eec
Q 030227 84 ALS 86 (181)
Q Consensus 84 ~~a 86 (181)
.||
T Consensus 165 ~~A 167 (167)
T 1fxl_A 165 KFA 167 (167)
T ss_dssp EEC
T ss_pred EeC
Confidence 875
No 187
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.69 E-value=1.3e-16 Score=115.91 Aligned_cols=80 Identities=19% Similarity=0.322 Sum_probs=73.2
Q ss_pred CCCCeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeC---CeEEE
Q 030227 6 NSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLY---NRTLR 82 (181)
Q Consensus 6 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~---g~~i~ 82 (181)
.+.++|||+|||+.+++++|+++|+.||.|..+.++.++ +|.++|||||+|.+.++|.+|++.||+. .+. +++|+
T Consensus 93 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~-~~~~g~~~~l~ 170 (175)
T 3nmr_A 93 VEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQA-QTMEGCSSPMV 170 (175)
T ss_dssp GGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTS-CCCTTCSSCCE
T ss_pred CCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCC-cccCCCCCCeE
Confidence 357899999999999999999999999999999999985 6999999999999999999999999997 554 38999
Q ss_pred EEecC
Q 030227 83 FALSG 87 (181)
Q Consensus 83 v~~a~ 87 (181)
|.||.
T Consensus 171 V~~ad 175 (175)
T 3nmr_A 171 VKFAD 175 (175)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 99974
No 188
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.68 E-value=4.8e-16 Score=105.02 Aligned_cols=83 Identities=18% Similarity=0.065 Sum_probs=73.6
Q ss_pred CCCCCeEEEcCCCC-----cCcHHHHHHHHHhcCCeEEEEEecCCCC-CCcceEEEEEeCCHHHHHHHHHHhCCCeeeCC
Q 030227 5 SNSGCNVYIGNLDE-----KVSERVLYDILIQAGRVVDLYIPRDKET-DKPKGFAFVEYESEEIADYAIKLFSGIVTLYN 78 (181)
Q Consensus 5 ~~~~~~l~V~nLp~-----~~te~~l~~~f~~~G~i~~~~i~~~~~~-~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g 78 (181)
..++++|+|.||.. +-++++|++.|++||.|.++.|+.++.+ +.++|++||+|.+.++|++|++.|||. .++|
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~-~~~G 83 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGR-YFGG 83 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTC-EETT
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCC-EECC
Confidence 35789999999962 2367999999999999999999998654 689999999999999999999999998 9999
Q ss_pred eEEEEEecCC
Q 030227 79 RTLRFALSGQ 88 (181)
Q Consensus 79 ~~i~v~~a~~ 88 (181)
+.|+|.++..
T Consensus 84 r~i~v~~a~~ 93 (105)
T 2pe8_A 84 RVVKACFYNL 93 (105)
T ss_dssp EECEEEECCH
T ss_pred cEEEEEEcCH
Confidence 9999999864
No 189
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.68 E-value=2.5e-16 Score=117.48 Aligned_cols=79 Identities=19% Similarity=0.220 Sum_probs=72.5
Q ss_pred CCeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEEEEEecC
Q 030227 8 GCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFALSG 87 (181)
Q Consensus 8 ~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i~v~~a~ 87 (181)
.++|||+|||+++++++|+++|++||.|..|+++++. ++.++|||||+|.+.++|+.|+..++ . .++|+.|+|.++.
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~-~-~~~Gr~l~V~~~~ 185 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETPG-Q-KYKETDLLILFKD 185 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCTT-C-EETTEECEEEETT
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhCC-C-eECCEEEEEEEhH
Confidence 4789999999999999999999999999999999985 58999999999999999999998654 4 8999999999986
Q ss_pred CC
Q 030227 88 QD 89 (181)
Q Consensus 88 ~~ 89 (181)
..
T Consensus 186 ~y 187 (193)
T 2voo_A 186 DY 187 (193)
T ss_dssp TC
T ss_pred HH
Confidence 53
No 190
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.68 E-value=1.5e-16 Score=110.14 Aligned_cols=78 Identities=23% Similarity=0.407 Sum_probs=70.4
Q ss_pred CCCCCeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEEEEE
Q 030227 5 SNSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFA 84 (181)
Q Consensus 5 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i~v~ 84 (181)
..+.++|||+|| ++++++|+++|+.||.|..|.+. .++|||||+|.+.++|+.||..||+. .+.|+.|+|.
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~-~~~g~~l~V~ 106 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGT-QVESVQLKVN 106 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTC-BCSSCBCEEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCC-EECCeEEEEE
Confidence 356889999996 69999999999999999999885 46799999999999999999999998 9999999999
Q ss_pred ecCCCCC
Q 030227 85 LSGQDKN 91 (181)
Q Consensus 85 ~a~~~~~ 91 (181)
++.+...
T Consensus 107 ~a~~~~~ 113 (121)
T 2bz2_A 107 IARKQPM 113 (121)
T ss_dssp ECCSSCC
T ss_pred EeCCCCC
Confidence 9977543
No 191
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.66 E-value=3.8e-16 Score=113.83 Aligned_cols=78 Identities=21% Similarity=0.344 Sum_probs=71.5
Q ss_pred CCCCeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEEEEEe
Q 030227 6 NSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFAL 85 (181)
Q Consensus 6 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i~v~~ 85 (181)
.+.++|||+|||+++++++|+++|+.||.|..+ ..++.++|||||+|.+.++|.+|+..||+. .++|+.|+|.+
T Consensus 97 ~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~-~~~g~~i~v~~ 170 (175)
T 1fje_B 97 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGA-EIDGRSVSLYY 170 (175)
T ss_dssp GGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEE-EETTEEEEEEE
T ss_pred ccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCC-EECCeEEEEEe
Confidence 356899999999999999999999999988766 357899999999999999999999999997 99999999999
Q ss_pred cCCC
Q 030227 86 SGQD 89 (181)
Q Consensus 86 a~~~ 89 (181)
+.++
T Consensus 171 a~~k 174 (175)
T 1fje_B 171 TGEK 174 (175)
T ss_dssp CSSC
T ss_pred cCCC
Confidence 9763
No 192
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.65 E-value=3.8e-16 Score=119.75 Aligned_cols=77 Identities=19% Similarity=0.324 Sum_probs=70.0
Q ss_pred CCCCeEEEcCCCCcC---------cHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeee
Q 030227 6 NSGCNVYIGNLDEKV---------SERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTL 76 (181)
Q Consensus 6 ~~~~~l~V~nLp~~~---------te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i 76 (181)
.+.++||||||+..+ ++++|+++|++||+|.+|.|+. .+|||||+|.+.++|+.|++.|++. .|
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am~g~-~l 204 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE------SKNCGFVKFKYQANAEFAKEAMSNQ-TL 204 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHHHTTC-CC
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC------CCCEEEEEeCCHHHHHHHHHHhCCC-EE
Confidence 468899999999998 7999999999999999999985 4699999999999999999999998 77
Q ss_pred ------------CCeEEEEEecCCC
Q 030227 77 ------------YNRTLRFALSGQD 89 (181)
Q Consensus 77 ------------~g~~i~v~~a~~~ 89 (181)
.|+.|.|.||...
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~ 229 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANED 229 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC--
T ss_pred eccccccccccCCCCEEEEEEccCC
Confidence 8999999999764
No 193
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.63 E-value=2.3e-15 Score=117.74 Aligned_cols=76 Identities=20% Similarity=0.328 Sum_probs=70.7
Q ss_pred CCCCeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeC-CeEEEEE
Q 030227 6 NSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLY-NRTLRFA 84 (181)
Q Consensus 6 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~-g~~i~v~ 84 (181)
.++++|||+|||..+++++|+++|+.||.|..++++.++ +|||||+|.+.++|..|++.||+. .+. |+.|+|.
T Consensus 205 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~-~~~~g~~l~v~ 278 (282)
T 3pgw_A 205 PPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGF-KITQNNAMKIS 278 (282)
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCc-EeCCCCEEEEE
Confidence 457899999999999999999999999999999998653 589999999999999999999998 888 9999999
Q ss_pred ecC
Q 030227 85 LSG 87 (181)
Q Consensus 85 ~a~ 87 (181)
|++
T Consensus 279 ~ak 281 (282)
T 3pgw_A 279 FAK 281 (282)
T ss_pred Eec
Confidence 985
No 194
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.60 E-value=2.2e-15 Score=113.36 Aligned_cols=78 Identities=14% Similarity=0.164 Sum_probs=68.5
Q ss_pred CCCCeEEEcCCCCcCcHHHHHHHHHhcCCe--EEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCe----
Q 030227 6 NSGCNVYIGNLDEKVSERVLYDILIQAGRV--VDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNR---- 79 (181)
Q Consensus 6 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i--~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~---- 79 (181)
.++++|||+|||+++++++|+++|++||.| .+++++.++ +..+|+|||+|.+.++|..||..||+. .+.|.
T Consensus 121 ~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~-~~~g~~~~~ 197 (205)
T 3tyt_A 121 HPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHY-QMKNPNGPY 197 (205)
T ss_dssp CCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTC-EECCSSSSS
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCC-CccCCCCCc
Confidence 457899999999999999999999999999 899998874 566799999999999999999999998 88886
Q ss_pred EEEEEec
Q 030227 80 TLRFALS 86 (181)
Q Consensus 80 ~i~v~~a 86 (181)
++.|.++
T Consensus 198 p~~vk~~ 204 (205)
T 3tyt_A 198 PYTLKLC 204 (205)
T ss_dssp CEECEEE
T ss_pred ceEEEec
Confidence 4555543
No 195
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.59 E-value=1.6e-15 Score=102.25 Aligned_cols=73 Identities=19% Similarity=0.222 Sum_probs=64.7
Q ss_pred EEcCCCCcCcHHHHHHHH------------HhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCe
Q 030227 12 YIGNLDEKVSERVLYDIL------------IQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNR 79 (181)
Q Consensus 12 ~V~nLp~~~te~~l~~~f------------~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~ 79 (181)
.+.||++.+++++|++.| ++||.|.+|.|++++ .++++|||||+|.+.++|++|++.|||. .++|+
T Consensus 19 ~~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~-~~~Gr 96 (104)
T 1jmt_A 19 SADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNR-WFNGQ 96 (104)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTC-EETTE
T ss_pred ccCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCC-EECCE
Confidence 356778888888777666 999999999999985 4789999999999999999999999998 99999
Q ss_pred EEEEEec
Q 030227 80 TLRFALS 86 (181)
Q Consensus 80 ~i~v~~a 86 (181)
.|+|.++
T Consensus 97 ~i~v~~s 103 (104)
T 1jmt_A 97 PIHAELS 103 (104)
T ss_dssp ECCEEEC
T ss_pred EEEEEEc
Confidence 9999986
No 196
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=2.4e-14 Score=97.52 Aligned_cols=80 Identities=23% Similarity=0.241 Sum_probs=69.0
Q ss_pred CCCCCeEEEcCCCCcC-----------cHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCC
Q 030227 5 SNSGCNVYIGNLDEKV-----------SERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGI 73 (181)
Q Consensus 5 ~~~~~~l~V~nLp~~~-----------te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~ 73 (181)
..++++|+|.||.... ++++|+++|++||.|..|.| .++ .++|||||+|.+.++|+.|++.||+.
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng~ 87 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDGR 87 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTTC
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCCC
Confidence 4668999999994333 25799999999999999965 443 38999999999999999999999998
Q ss_pred eeeCCeEEEEEecCCC
Q 030227 74 VTLYNRTLRFALSGQD 89 (181)
Q Consensus 74 ~~i~g~~i~v~~a~~~ 89 (181)
.++|+.|+|.++.+.
T Consensus 88 -~~~gr~l~v~~a~~~ 102 (112)
T 2dit_A 88 -WFGGRQITAQAWDGT 102 (112)
T ss_dssp -EETTEECEEEECCSC
T ss_pred -EECCcEEEEEEeCCC
Confidence 999999999998764
No 197
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.59 E-value=4.4e-15 Score=110.36 Aligned_cols=77 Identities=22% Similarity=0.216 Sum_probs=71.3
Q ss_pred CCCCeEEEcCCCCcCcHHHHHHHHHhcC-CeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeC-CeEEEE
Q 030227 6 NSGCNVYIGNLDEKVSERVLYDILIQAG-RVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLY-NRTLRF 83 (181)
Q Consensus 6 ~~~~~l~V~nLp~~~te~~l~~~f~~~G-~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~-g~~i~v 83 (181)
.++++|||+|||..+++++|+++|+.|| .|..+.++.+ .+|+|||+|.+.++|..|+..||+. .++ |+.|+|
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~-----~~g~afV~f~~~~~A~~A~~~l~g~-~~~~g~~l~v 191 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNH-DLGENHHLRV 191 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST-----TSSCEEEECSSHHHHHHHHHHHTSS-CCSSCCSCCE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhcCC-ccCCCCeEEE
Confidence 4588999999999999999999999999 9999998764 3689999999999999999999998 888 999999
Q ss_pred EecCC
Q 030227 84 ALSGQ 88 (181)
Q Consensus 84 ~~a~~ 88 (181)
.|+++
T Consensus 192 ~~a~~ 196 (198)
T 1qm9_A 192 SFSKS 196 (198)
T ss_dssp EEECC
T ss_pred Eeecc
Confidence 99876
No 198
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.58 E-value=9e-15 Score=111.46 Aligned_cols=77 Identities=22% Similarity=0.216 Sum_probs=71.0
Q ss_pred CCCCeEEEcCCCCcCcHHHHHHHHHhcC-CeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeC-CeEEEE
Q 030227 6 NSGCNVYIGNLDEKVSERVLYDILIQAG-RVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLY-NRTLRF 83 (181)
Q Consensus 6 ~~~~~l~V~nLp~~~te~~l~~~f~~~G-~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~-g~~i~v 83 (181)
.++++|||+|||+.+++++|+++|+.|| .|..+.++.+ .+|||||+|.+.++|.+|+..||+. .+. |+.|+|
T Consensus 149 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~-~~~~g~~l~v 222 (229)
T 2adc_A 149 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNH-DLGENHHLRV 222 (229)
T ss_dssp CSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTC-BSSSSCBCEE
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCC-ccCCCCeEEE
Confidence 4578999999999999999999999999 9999998653 3689999999999999999999998 888 999999
Q ss_pred EecCC
Q 030227 84 ALSGQ 88 (181)
Q Consensus 84 ~~a~~ 88 (181)
.|+++
T Consensus 223 ~~a~~ 227 (229)
T 2adc_A 223 SFSKS 227 (229)
T ss_dssp EECSS
T ss_pred EEecC
Confidence 99876
No 199
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.58 E-value=1.5e-14 Score=97.68 Aligned_cols=82 Identities=21% Similarity=0.176 Sum_probs=71.3
Q ss_pred CCCCeEEEcCC--CCcCc--------HHHHHHHHHhcCCeEEEEEecCCCC--CCcceEEEEEeCCHHHHHHHHHHhCCC
Q 030227 6 NSGCNVYIGNL--DEKVS--------ERVLYDILIQAGRVVDLYIPRDKET--DKPKGFAFVEYESEEIADYAIKLFSGI 73 (181)
Q Consensus 6 ~~~~~l~V~nL--p~~~t--------e~~l~~~f~~~G~i~~~~i~~~~~~--~~~~g~afV~f~~~~~a~~al~~l~g~ 73 (181)
.|++.|.+.|+ |.... +++|++.|++||.|.++.|++++.+ +.++|++||+|.+.++|++|++.|||.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 46889999998 44443 3689999999999999999988654 368999999999999999999999998
Q ss_pred eeeCCeEEEEEecCC
Q 030227 74 VTLYNRTLRFALSGQ 88 (181)
Q Consensus 74 ~~i~g~~i~v~~a~~ 88 (181)
.++|+.|+|.++..
T Consensus 83 -~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 83 -KFANRVVVTKYCDP 96 (105)
T ss_dssp -EETTEECEEEEECH
T ss_pred -EeCCCEEEEEEeCH
Confidence 99999999998754
No 200
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.57 E-value=1.4e-14 Score=112.56 Aligned_cols=84 Identities=23% Similarity=0.247 Sum_probs=75.0
Q ss_pred CCCCeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeC---CeEEE
Q 030227 6 NSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLY---NRTLR 82 (181)
Q Consensus 6 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~---g~~i~ 82 (181)
.++++|||+|||..+++++|+++|+.||.|..|.++.+ .+|+++|||||+|.+.++|..|+..||+...+. +++|.
T Consensus 94 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~ 172 (261)
T 3sde_A 94 THGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVI 172 (261)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCE
T ss_pred ccCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEE
Confidence 45789999999999999999999999999999999999 589999999999999999999999995432444 89999
Q ss_pred EEecCCCC
Q 030227 83 FALSGQDK 90 (181)
Q Consensus 83 v~~a~~~~ 90 (181)
|.++.+..
T Consensus 173 v~~~~~~~ 180 (261)
T 3sde_A 173 VEPMEQFD 180 (261)
T ss_dssp EEECCCEE
T ss_pred EeeccccC
Confidence 99987643
No 201
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.52 E-value=6.3e-14 Score=96.45 Aligned_cols=82 Identities=17% Similarity=0.154 Sum_probs=71.3
Q ss_pred CCCCeEEEcCCC--CcC---cHHHHHHHHHhcCCeEEEEEecCCC----CCCcceEEEEEeCCHHHHHHHHHHhCCCeee
Q 030227 6 NSGCNVYIGNLD--EKV---SERVLYDILIQAGRVVDLYIPRDKE----TDKPKGFAFVEYESEEIADYAIKLFSGIVTL 76 (181)
Q Consensus 6 ~~~~~l~V~nLp--~~~---te~~l~~~f~~~G~i~~~~i~~~~~----~~~~~g~afV~f~~~~~a~~al~~l~g~~~i 76 (181)
.+++.|++.|+- .++ .+++|++.|++||.|.+|.|++++. +++++|++||+|.+.++|.+|++.|||. .+
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr-~f 96 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGR-WF 96 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTC-EE
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCC-EE
Confidence 368999999984 222 3589999999999999999998854 3567899999999999999999999998 99
Q ss_pred CCeEEEEEecCC
Q 030227 77 YNRTLRFALSGQ 88 (181)
Q Consensus 77 ~g~~i~v~~a~~ 88 (181)
+|+.|+|.++..
T Consensus 97 ~GR~i~v~~~~~ 108 (118)
T 3ue2_A 97 AGRKVVAEVYDQ 108 (118)
T ss_dssp TTEECEEEEECH
T ss_pred CCcEEEEEEcCh
Confidence 999999998753
No 202
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.51 E-value=8.1e-14 Score=112.07 Aligned_cols=77 Identities=25% Similarity=0.358 Sum_probs=66.6
Q ss_pred CCCCCCeEEEcC--CCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeee---CC
Q 030227 4 NSNSGCNVYIGN--LDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTL---YN 78 (181)
Q Consensus 4 ~~~~~~~l~V~n--Lp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i---~g 78 (181)
.+.++++||||| |++.+|+++|+++|++||+|.+|.+.. .||||||+|.+.++|++|++.|||. .+ .|
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~-~~~~~~g 86 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGK-EVVDDLG 86 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTC-EEECTTS
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCC-ccccccC
Confidence 467899999999 578999999999999999999987753 4699999999999999999999998 55 23
Q ss_pred e--EEEEEecC
Q 030227 79 R--TLRFALSG 87 (181)
Q Consensus 79 ~--~i~v~~a~ 87 (181)
+ .|.+.++.
T Consensus 87 ~~~~ly~~~~~ 97 (345)
T 3tht_A 87 QKITLYLNFVE 97 (345)
T ss_dssp CEEECEEEECS
T ss_pred CceEEEEEEee
Confidence 4 67788874
No 203
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=1.6e-12 Score=86.81 Aligned_cols=77 Identities=21% Similarity=0.245 Sum_probs=63.7
Q ss_pred CCeEEEcCCC-------CcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeE
Q 030227 8 GCNVYIGNLD-------EKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRT 80 (181)
Q Consensus 8 ~~~l~V~nLp-------~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~ 80 (181)
.++|-|.-.. ..+++++|+++|++||.|..|.|+ ++++|||||+|.+.++|+.|++.++ .+.+++
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~---~~~g~~ 81 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEV---GLVDNP 81 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCC---BCSSSB
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcC---CCCCCe
Confidence 4566666443 468999999999999999999987 3689999999999999999999755 457899
Q ss_pred EEEEecCCCCCC
Q 030227 81 LRFALSGQDKNT 92 (181)
Q Consensus 81 i~v~~a~~~~~~ 92 (181)
|+|.|+.+....
T Consensus 82 l~V~~a~~~~~~ 93 (100)
T 2d9o_A 82 LKISWLEGQPQD 93 (100)
T ss_dssp CEEECSSCCCCC
T ss_pred EEEEEccCCCCC
Confidence 999999775443
No 204
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.36 E-value=5.3e-12 Score=86.24 Aligned_cols=80 Identities=14% Similarity=0.161 Sum_probs=67.1
Q ss_pred CCCCCCeEEEcCCCCcC----------cHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCC
Q 030227 4 NSNSGCNVYIGNLDEKV----------SERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGI 73 (181)
Q Consensus 4 ~~~~~~~l~V~nLp~~~----------te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~ 73 (181)
+.-+++.|.+.|+=..- .+++|++.|++||.|.+|.+.++. .+|++||+|.+.++|++|++.|||.
T Consensus 3 ~p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~ 78 (114)
T 3s6e_A 3 QPLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGR 78 (114)
T ss_dssp CCCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTC
T ss_pred CCCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCC
Confidence 34568889998884211 125789999999999999997652 5899999999999999999999998
Q ss_pred eeeCCeEEEEEecCC
Q 030227 74 VTLYNRTLRFALSGQ 88 (181)
Q Consensus 74 ~~i~g~~i~v~~a~~ 88 (181)
.++|+.|+|.++..
T Consensus 79 -~f~GR~i~v~~~~~ 92 (114)
T 3s6e_A 79 -WFAGKMITAAYVPL 92 (114)
T ss_dssp -EETTEECEEEEECH
T ss_pred -EECCEEEEEEEEcH
Confidence 99999999999853
No 205
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.35 E-value=4.8e-13 Score=96.13 Aligned_cols=123 Identities=13% Similarity=0.080 Sum_probs=79.8
Q ss_pred EEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEEEEEecCCCCCCCCCCCccCCCCCCCCCCCCCcccc
Q 030227 37 DLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFALSGQDKNTQNSSMTTTPLSSRKSRSDPVPVPV 116 (181)
Q Consensus 37 ~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (181)
++.++.+. .+++|||||+|.+.++|++|++.+++...+++ .+.+............. ..............+++
T Consensus 2 ~~kl~ln~--~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~v 75 (158)
T 2kn4_A 2 QYKLILNG--KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGS---HHHHHHMDVEGMTSLKV 75 (158)
T ss_dssp EEEEEEEC--SSCEEEEEEECSSHHHHHHHHHHHHHHHTCCC-EEEEETTTTEEEEECCC---CCSSCCCCCCBCCEEEE
T ss_pred cEEEEecC--ccccchhHHHHHHHHhHHHHHHhhcccCCCCC-cccccCccccccccccc---cccccccCCCCCCEEEE
Confidence 45666664 47999999999999999999988876412233 22222111100000000 00001111112257888
Q ss_pred CCcc-----------CCCCCcceecCCCCC-CCCCCCccee-eecCCCch-hh-hcccCccccc
Q 030227 117 NGME-----------ISHHSMRISEPPPPG-VTHESNGYET-HLNVTNYD-YS-RRVFGATLDS 165 (181)
Q Consensus 117 ~~~~-----------f~~~g~i~~~~~~~~-~~~~~kG~gf-~f~~~~~~-~a-~~~~g~~~~~ 165 (181)
.+|| |+++|+|..+.++.+ .++.++|||| .|.+.+.+ .| ..+||..|+.
T Consensus 76 ~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 139 (158)
T 2kn4_A 76 DNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDG 139 (158)
T ss_dssp ESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSS
T ss_pred eCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 8888 799999999999999 7999999999 88766544 44 7889988873
No 206
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.32 E-value=1.7e-11 Score=79.53 Aligned_cols=78 Identities=22% Similarity=0.296 Sum_probs=66.2
Q ss_pred CCCCCCeEEEcCCC----CcCcH----HHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCee
Q 030227 4 NSNSGCNVYIGNLD----EKVSE----RVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVT 75 (181)
Q Consensus 4 ~~~~~~~l~V~nLp----~~~te----~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~ 75 (181)
.-+|..||+|.-++ .++.+ .+|.+.|.+||.|..++++.++ +||+|.+.++|.+||. |||. .
T Consensus 3 ~GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~-~ 72 (91)
T 2dnr_A 3 SGSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGK-E 72 (91)
T ss_dssp CCCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTC-E
T ss_pred CCCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCe-E
Confidence 45678888888776 23444 5789999999999999998874 8999999999999999 9998 9
Q ss_pred eCCeEEEEEecCCCCC
Q 030227 76 LYNRTLRFALSGQDKN 91 (181)
Q Consensus 76 i~g~~i~v~~a~~~~~ 91 (181)
+.|+.|+|..++++..
T Consensus 73 v~Gr~LkV~lkt~dW~ 88 (91)
T 2dnr_A 73 LLNRTITIALKSPSGP 88 (91)
T ss_dssp ETTEEEEEEECCCSSC
T ss_pred eCCeEEEEEeCCCCcc
Confidence 9999999999887543
No 207
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.22 E-value=4.1e-11 Score=82.28 Aligned_cols=76 Identities=12% Similarity=0.106 Sum_probs=66.1
Q ss_pred CCCCeEEEcCCCCc-CcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCC-HHHHHHHHHHhCC-CeeeCCeEEE
Q 030227 6 NSGCNVYIGNLDEK-VSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYES-EEIADYAIKLFSG-IVTLYNRTLR 82 (181)
Q Consensus 6 ~~~~~l~V~nLp~~-~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~-~~~a~~al~~l~g-~~~i~g~~i~ 82 (181)
.+++.|||+||+.+ +++++|+++|++||+|..|.++.+.. .|||.|.+ ..+|..|++.||. .+.|.|..++
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~ 89 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKEVT 89 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEE
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEE
Confidence 56899999999999 99999999999999999999988753 59999999 8999999999852 2488888888
Q ss_pred EEecC
Q 030227 83 FALSG 87 (181)
Q Consensus 83 v~~a~ 87 (181)
+....
T Consensus 90 ~evL~ 94 (121)
T 1owx_A 90 WEVLE 94 (121)
T ss_dssp EEECC
T ss_pred EEECC
Confidence 76543
No 208
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.21 E-value=3.2e-12 Score=91.18 Aligned_cols=114 Identities=14% Similarity=0.035 Sum_probs=81.3
Q ss_pred CCCcceEEEEEeCCHHHHHHHHHHh-CCCeeeCCeEEEEEecCCCCCCCCCCCccCCCCCCCCCCCCCccccCCcc----
Q 030227 46 TDKPKGFAFVEYESEEIADYAIKLF-SGIVTLYNRTLRFALSGQDKNTQNSSMTTTPLSSRKSRSDPVPVPVNGME---- 120 (181)
Q Consensus 46 ~~~~~g~afV~f~~~~~a~~al~~l-~g~~~i~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 120 (181)
....+|+++|+|.+.++|++|++.+ |+. .++| .+++.++......................+....+++.+||
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~-~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t 86 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDN-GVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGN 86 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHH-TCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCS
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCC-CCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCC
Confidence 4578999999999999999999999 998 9999 99999876532211110000001111111222678888888
Q ss_pred -------CCCCCcceecCCCCCCCCCCCccee-eecCCCc-hhh-hcccCccccc
Q 030227 121 -------ISHHSMRISEPPPPGVTHESNGYET-HLNVTNY-DYS-RRVFGATLDS 165 (181)
Q Consensus 121 -------f~~~g~i~~~~~~~~~~~~~kG~gf-~f~~~~~-~~a-~~~~g~~~~~ 165 (181)
|+++|+|..++++.+ ++|||| .|.+.+. +.| ..+||..|..
T Consensus 87 ~~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g 137 (150)
T 2i2y_A 87 KTELERAFGYYGPLRSVWVARN----PPGFAFVEFEDPRDAADAVRELDGRTLCG 137 (150)
T ss_dssp CHHHHHHHHHHSCEEEEEECSS----SCSEEEEEESSHHHHHHHHHHHSSSCSSS
T ss_pred HHHHHHHHHhhCCEEEEEEeeC----CCcEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 799999999999987 799999 8876654 444 7799988863
No 209
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.15 E-value=1.2e-10 Score=75.88 Aligned_cols=75 Identities=13% Similarity=0.167 Sum_probs=64.2
Q ss_pred CCCCCCeEEEcCCCCc-----CcH----HHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCe
Q 030227 4 NSNSGCNVYIGNLDEK-----VSE----RVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIV 74 (181)
Q Consensus 4 ~~~~~~~l~V~nLp~~-----~te----~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~ 74 (181)
.-+|..||+|.-++.+ +.+ .+|.+.|.+||.+..++++.++ +||+|.+.++|.+||+ |||.
T Consensus 11 ~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~- 80 (95)
T 1ufw_A 11 QGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGM- 80 (95)
T ss_dssp CCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGS-
T ss_pred cCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCe-
Confidence 4577889999988742 333 4688999999999999999874 9999999999999999 9998
Q ss_pred eeCCeEEEEEecCC
Q 030227 75 TLYNRTLRFALSGQ 88 (181)
Q Consensus 75 ~i~g~~i~v~~a~~ 88 (181)
.++|+.|+|.+..+
T Consensus 81 ~v~Gr~L~V~~k~~ 94 (95)
T 1ufw_A 81 KVKGRAVKISGPSS 94 (95)
T ss_dssp EETTEEEEEECCCC
T ss_pred eeCCeEEEEeccCC
Confidence 99999999997543
No 210
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.99 E-value=1.3e-09 Score=82.31 Aligned_cols=69 Identities=20% Similarity=0.134 Sum_probs=60.8
Q ss_pred cCcHHHHHHHHHhcCCeEEEEEecCC----CCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEEEEEecCC
Q 030227 19 KVSERVLYDILIQAGRVVDLYIPRDK----ETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFALSGQ 88 (181)
Q Consensus 19 ~~te~~l~~~f~~~G~i~~~~i~~~~----~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i~v~~a~~ 88 (181)
.-.+++|++.|++||.|.++.++.+. .+++++|++||+|.+.++|++|++.|||. .++||.|.+.++..
T Consensus 140 ~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr-~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 140 DDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGR-WFAGRKVVAEVYDQ 212 (222)
T ss_dssp TTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTC-BSSSSBCEEEECCH
T ss_pred HHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCc-eECCeEEEEEEcCH
Confidence 34567899999999999999998553 45589999999999999999999999998 99999999998753
No 211
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.55 E-value=9.7e-07 Score=58.77 Aligned_cols=73 Identities=14% Similarity=0.230 Sum_probs=66.1
Q ss_pred CCCCeEEEcCCCCcCcHHHHHHHHHhc-----CCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeE
Q 030227 6 NSGCNVYIGNLDEKVSERVLYDILIQA-----GRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRT 80 (181)
Q Consensus 6 ~~~~~l~V~nLp~~~te~~l~~~f~~~-----G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~ 80 (181)
+..++|-+-|||..+++..|+.+..++ |.+..+.+..|- +-|+|+|.+...|-+|.-.|+|. .+.|+.
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~-ef~gr~ 91 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGS-QFQGKV 91 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSE-EETTEE
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCe-eecCeE
Confidence 347888889999999999999999999 999999988874 68999999999999999889998 999999
Q ss_pred EEEEe
Q 030227 81 LRFAL 85 (181)
Q Consensus 81 i~v~~ 85 (181)
|++.-
T Consensus 92 Lr~gT 96 (117)
T 2l9w_A 92 IRSGT 96 (117)
T ss_dssp EEEEC
T ss_pred EEecC
Confidence 99863
No 212
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=98.47 E-value=6e-10 Score=92.48 Aligned_cols=53 Identities=9% Similarity=-0.009 Sum_probs=44.8
Q ss_pred CccccCCcc-----------CCCCCcceecCCCCC-CCCCCCccee-eecCCCchh-h-hcccCcccc
Q 030227 112 VPVPVNGME-----------ISHHSMRISEPPPPG-VTHESNGYET-HLNVTNYDY-S-RRVFGATLD 164 (181)
Q Consensus 112 ~~~~~~~~~-----------f~~~g~i~~~~~~~~-~~~~~kG~gf-~f~~~~~~~-a-~~~~g~~~~ 164 (181)
..|+|.+|| |.+||.|..|.|+.+ .++.++|||| .|.+.+.+. | ..|||..|.
T Consensus 103 ~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~ 170 (437)
T 3pgw_S 103 KTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKID 170 (437)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEEC
Confidence 478888888 899999999999999 8999999999 777665444 4 788998887
No 213
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=98.46 E-value=5.1e-08 Score=68.18 Aligned_cols=96 Identities=13% Similarity=0.071 Sum_probs=46.5
Q ss_pred EEEEEeCCHHHHHHHHHHhCCCeeeCCeEEEEEecCCCCCCCCCCCccCCCCCCCCCCCCCccccCCcc-----------
Q 030227 52 FAFVEYESEEIADYAIKLFSGIVTLYNRTLRFALSGQDKNTQNSSMTTTPLSSRKSRSDPVPVPVNGME----------- 120 (181)
Q Consensus 52 ~afV~f~~~~~a~~al~~l~g~~~i~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 120 (181)
+.|+++.+...+..|+..+++. ...|+. .+.+..+ .........+++.+||
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~g~-~~~g~~-~~~~~~~----------------~~~~~~~~~l~V~nLp~~~te~~L~~~ 67 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMTGG-QQMGRG-SMSYGRP----------------PPDVEGMTSLKVDNLTYRTSPDTLRRV 67 (135)
T ss_dssp -------------------------------CCSCCS----------------CSSGGGCCCEEEECCCSSCHHHHHHHH
T ss_pred cccccccCCCchhhhhhhccCC-CCCCCC-CCCcCCC----------------CCCCCCCCEEEEeCCCCCCCHHHHHHH
Confidence 6788888888888998888875 333322 0000000 0001111578888888
Q ss_pred CCCCCcceecCCCCC-CCCCCCccee-eecCCCchh-h-hcccCccccc
Q 030227 121 ISHHSMRISEPPPPG-VTHESNGYET-HLNVTNYDY-S-RRVFGATLDS 165 (181)
Q Consensus 121 f~~~g~i~~~~~~~~-~~~~~kG~gf-~f~~~~~~~-a-~~~~g~~~~~ 165 (181)
|+++|.|..+.++.+ .++.++|||| .|.+.+.+. | ..++|..|+.
T Consensus 68 F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g 116 (135)
T 2lea_A 68 FEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDG 116 (135)
T ss_dssp HGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSS
T ss_pred HHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 799999999999999 7899999999 887665444 4 7789988874
No 214
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=98.36 E-value=3.3e-08 Score=71.33 Aligned_cols=109 Identities=12% Similarity=0.023 Sum_probs=45.7
Q ss_pred EEeCCHHHHHHHHHHhCCCeeeC--CeEEEEEecCCCCCCCCCCC---ccC-CCCCCCCCCCCCccccCCcc--------
Q 030227 55 VEYESEEIADYAIKLFSGIVTLY--NRTLRFALSGQDKNTQNSSM---TTT-PLSSRKSRSDPVPVPVNGME-------- 120 (181)
Q Consensus 55 V~f~~~~~a~~al~~l~g~~~i~--g~~i~v~~a~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~-------- 120 (181)
.+|.+.++|+.|+..+++. ... |+.....++.......-... ... ..+..........++|.+||
T Consensus 11 ee~e~~~d~e~~~~~~~~~-~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L 89 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEK-AKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEI 89 (165)
T ss_dssp --------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHH
T ss_pred hhhhccccccccchhhccc-cccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHH
Confidence 7899999999999988886 443 45555554322111110000 000 00110011112578899998
Q ss_pred ---CCCCCcceecCCCCC-CCCCCCccee-eecCCCc-hhh-hcccCcccc
Q 030227 121 ---ISHHSMRISEPPPPG-VTHESNGYET-HLNVTNY-DYS-RRVFGATLD 164 (181)
Q Consensus 121 ---f~~~g~i~~~~~~~~-~~~~~kG~gf-~f~~~~~-~~a-~~~~g~~~~ 164 (181)
|.++|.|..+.++.+ .++.++|||| .|.+.+. +.| ..|||..|.
T Consensus 90 ~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 140 (165)
T 1rk8_A 90 QEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIM 140 (165)
T ss_dssp HHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred HHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 899999999999999 8999999999 8877654 444 778988887
No 215
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=98.25 E-value=6.3e-07 Score=62.05 Aligned_cols=53 Identities=11% Similarity=0.100 Sum_probs=45.8
Q ss_pred CccccCCcc-----------CCCCCccee--cCCCCC-CCCCCCccee-eecCCCchhh-hcccCc----ccc
Q 030227 112 VPVPVNGME-----------ISHHSMRIS--EPPPPG-VTHESNGYET-HLNVTNYDYS-RRVFGA----TLD 164 (181)
Q Consensus 112 ~~~~~~~~~-----------f~~~g~i~~--~~~~~~-~~~~~kG~gf-~f~~~~~~~a-~~~~g~----~~~ 164 (181)
..+++.+|| |.++|.|.. ++++.| .++.++|||| .|.+.+++.| ..+||. .++
T Consensus 24 ~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~~a~~Ai~~l~g~~~~~~~~ 96 (131)
T 2m2b_A 24 DTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTIEAAQLLQILQALHPPLTID 96 (131)
T ss_dssp CEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHHHHHHHHHHHTTCCCSCCGG
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCHHHHHHHHHhcCCCCCccCC
Confidence 578888988 799999976 999999 6999999999 8888877777 888888 666
No 216
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=98.22 E-value=1.6e-07 Score=63.33 Aligned_cols=53 Identities=8% Similarity=-0.073 Sum_probs=44.2
Q ss_pred CccccCCcc-----------CCCCCcceecCCCCC-CCCCCCccee-eecCCCchh-h-hcccCcccc
Q 030227 112 VPVPVNGME-----------ISHHSMRISEPPPPG-VTHESNGYET-HLNVTNYDY-S-RRVFGATLD 164 (181)
Q Consensus 112 ~~~~~~~~~-----------f~~~g~i~~~~~~~~-~~~~~kG~gf-~f~~~~~~~-a-~~~~g~~~~ 164 (181)
..+++.+|+ |+++|+|..+.++.| .++.++|||| .|.+.+.+. | ..+||..|.
T Consensus 7 ~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~ 74 (110)
T 3s8s_A 7 KEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVM 74 (110)
T ss_dssp CEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred cEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 467777777 899999999999999 7899999999 877665444 4 789999887
No 217
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.20 E-value=1.7e-06 Score=57.06 Aligned_cols=54 Identities=15% Similarity=0.160 Sum_probs=45.4
Q ss_pred CccccCCcc-----------CCCCCcceecCCCCC-CCCCCCccee-eecCCCchhh--hcccCccccc
Q 030227 112 VPVPVNGME-----------ISHHSMRISEPPPPG-VTHESNGYET-HLNVTNYDYS--RRVFGATLDS 165 (181)
Q Consensus 112 ~~~~~~~~~-----------f~~~g~i~~~~~~~~-~~~~~kG~gf-~f~~~~~~~a--~~~~g~~~~~ 165 (181)
..+++.+|| |.++|.|..+.++.+ .++.++|||| .|.+.+.+.+ ..+||..|+.
T Consensus 14 ~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 82 (103)
T 2dnm_A 14 ITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDG 82 (103)
T ss_dssp CEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTT
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 578888888 799999999999999 7899999999 8877665444 7789988884
No 218
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=98.20 E-value=1.1e-07 Score=62.97 Aligned_cols=54 Identities=20% Similarity=0.120 Sum_probs=44.9
Q ss_pred CccccCCcc-----------CCCCCcceecCCCCC-CCCCCCccee-eecCCC-chhh-hcccCccccc
Q 030227 112 VPVPVNGME-----------ISHHSMRISEPPPPG-VTHESNGYET-HLNVTN-YDYS-RRVFGATLDS 165 (181)
Q Consensus 112 ~~~~~~~~~-----------f~~~g~i~~~~~~~~-~~~~~kG~gf-~f~~~~-~~~a-~~~~g~~~~~ 165 (181)
..+++.+|| |+++|+|..++++.| .++.++|||| .|.+.+ ++.| +.+||..|+.
T Consensus 20 t~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g 88 (99)
T 4fxv_A 20 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQS 88 (99)
T ss_dssp SEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECC
Confidence 367788887 899999999999999 8899999999 887654 4455 7899999874
No 219
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=98.19 E-value=3.2e-07 Score=59.57 Aligned_cols=52 Identities=8% Similarity=-0.010 Sum_probs=38.8
Q ss_pred ccccCCcc-----------CCCCC-cceecCCCCC-CCCCCCccee-eecCCCch-hh-hcc-cCcccc
Q 030227 113 PVPVNGME-----------ISHHS-MRISEPPPPG-VTHESNGYET-HLNVTNYD-YS-RRV-FGATLD 164 (181)
Q Consensus 113 ~~~~~~~~-----------f~~~g-~i~~~~~~~~-~~~~~kG~gf-~f~~~~~~-~a-~~~-~g~~~~ 164 (181)
.+.+.+|| |+++| +|..++++.| .++.++|||| .|.+.+.+ .| ..+ ++..++
T Consensus 3 ~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~ 71 (91)
T 2lxi_A 3 IVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNIL 71 (91)
T ss_dssp EEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEET
T ss_pred EEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEEC
Confidence 45677777 78999 8999999999 8899999999 88775444 44 444 344454
No 220
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.19 E-value=1.1e-06 Score=57.84 Aligned_cols=53 Identities=11% Similarity=0.090 Sum_probs=44.4
Q ss_pred CccccCCcc-----------CCCCCcceecCCCCC-CCCCCCccee-eecCCC-chhh-hcccCcccc
Q 030227 112 VPVPVNGME-----------ISHHSMRISEPPPPG-VTHESNGYET-HLNVTN-YDYS-RRVFGATLD 164 (181)
Q Consensus 112 ~~~~~~~~~-----------f~~~g~i~~~~~~~~-~~~~~kG~gf-~f~~~~-~~~a-~~~~g~~~~ 164 (181)
..+++.+|| |.++|+|..+.++.+ .++.++|||| .|.+.+ ++.| ..++|..|+
T Consensus 13 ~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 80 (102)
T 2cqb_A 13 RVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELF 80 (102)
T ss_dssp SCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEET
T ss_pred CEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 577888888 799999999999999 8899999999 776654 4444 778988887
No 221
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.14 E-value=1.5e-06 Score=56.97 Aligned_cols=54 Identities=6% Similarity=-0.031 Sum_probs=44.2
Q ss_pred CccccCCcc-----------CCCCCcceecCCCCC-CCCCCCccee-eecCCCchhh-hcccCccccc
Q 030227 112 VPVPVNGME-----------ISHHSMRISEPPPPG-VTHESNGYET-HLNVTNYDYS-RRVFGATLDS 165 (181)
Q Consensus 112 ~~~~~~~~~-----------f~~~g~i~~~~~~~~-~~~~~kG~gf-~f~~~~~~~a-~~~~g~~~~~ 165 (181)
..+++.+|| |.++|.|..+.++.+ .++.++|||| .|.+.+.+.+ .+++|..|+.
T Consensus 11 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g 78 (99)
T 2dgs_A 11 NKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMG 78 (99)
T ss_dssp CEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECC
Confidence 577888888 899999999999999 7899999999 8877654444 4488888873
No 222
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.14 E-value=8.5e-07 Score=57.60 Aligned_cols=54 Identities=13% Similarity=0.064 Sum_probs=43.9
Q ss_pred CccccCCcc-----------CCCCCcceecCCCCC-CCCCCCccee-eecCCCchh-h-hcccCccccc
Q 030227 112 VPVPVNGME-----------ISHHSMRISEPPPPG-VTHESNGYET-HLNVTNYDY-S-RRVFGATLDS 165 (181)
Q Consensus 112 ~~~~~~~~~-----------f~~~g~i~~~~~~~~-~~~~~kG~gf-~f~~~~~~~-a-~~~~g~~~~~ 165 (181)
..+++.+|| |+++|.|..+.++.+ .++.++|||| .|.+.+.+. | ..+||..++.
T Consensus 6 ~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 74 (95)
T 2dnz_A 6 SGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAG 74 (95)
T ss_dssp CEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSS
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCC
Confidence 466777777 899999999999999 7899999999 887665444 4 7789988873
No 223
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=98.13 E-value=8.5e-07 Score=58.17 Aligned_cols=51 Identities=8% Similarity=0.009 Sum_probs=40.8
Q ss_pred CccccCCcc-----------CCCCCc--ceecCCCCC-CCCCCCccee-eecCCC-chhh-hcccCcc
Q 030227 112 VPVPVNGME-----------ISHHSM--RISEPPPPG-VTHESNGYET-HLNVTN-YDYS-RRVFGAT 162 (181)
Q Consensus 112 ~~~~~~~~~-----------f~~~g~--i~~~~~~~~-~~~~~kG~gf-~f~~~~-~~~a-~~~~g~~ 162 (181)
.++++.+|| |++||. +..++++.| .++.+||||| .|.+.+ ++.| +.+||..
T Consensus 10 ~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~ 77 (95)
T 2lkz_A 10 DTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLH 77 (95)
T ss_dssp CEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSS
T ss_pred CEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCC
Confidence 367788888 899995 578999999 8899999999 887765 4444 7888764
No 224
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=98.12 E-value=7.7e-07 Score=55.26 Aligned_cols=45 Identities=4% Similarity=-0.023 Sum_probs=37.7
Q ss_pred CCCCCcceecCCCCC-CCCCCCccee-eecCCCchhh-hcccCccccc
Q 030227 121 ISHHSMRISEPPPPG-VTHESNGYET-HLNVTNYDYS-RRVFGATLDS 165 (181)
Q Consensus 121 f~~~g~i~~~~~~~~-~~~~~kG~gf-~f~~~~~~~a-~~~~g~~~~~ 165 (181)
|+++|+|..+.++.+ .++.++|||| .|.+.+.+.+ .+++|..++.
T Consensus 20 F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g 67 (75)
T 2mss_A 20 FEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINN 67 (75)
T ss_dssp HHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSS
T ss_pred HHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECC
Confidence 799999999999999 6899999999 8877765555 5588888764
No 225
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=98.12 E-value=8.7e-07 Score=58.80 Aligned_cols=52 Identities=4% Similarity=-0.079 Sum_probs=43.3
Q ss_pred CccccCCcc-----------CCCCCcceecCCCCC-CCCCCCccee-eecCCC-chhh-hcccCccc
Q 030227 112 VPVPVNGME-----------ISHHSMRISEPPPPG-VTHESNGYET-HLNVTN-YDYS-RRVFGATL 163 (181)
Q Consensus 112 ~~~~~~~~~-----------f~~~g~i~~~~~~~~-~~~~~kG~gf-~f~~~~-~~~a-~~~~g~~~ 163 (181)
..+++.+|| |.++|+|..+.++.+ .++.++|||| .|.+.+ ++.| ..++|..+
T Consensus 14 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~ 80 (106)
T 2dgp_A 14 IKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKT 80 (106)
T ss_dssp EEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcc
Confidence 577888888 799999999999999 7899999999 886655 4444 77999876
No 226
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=98.10 E-value=2.9e-07 Score=60.83 Aligned_cols=45 Identities=16% Similarity=0.177 Sum_probs=38.5
Q ss_pred CCCCCcceecCCCCC-CCCCCCccee-eecCC-Cchhh-hcccCccccc
Q 030227 121 ISHHSMRISEPPPPG-VTHESNGYET-HLNVT-NYDYS-RRVFGATLDS 165 (181)
Q Consensus 121 f~~~g~i~~~~~~~~-~~~~~kG~gf-~f~~~-~~~~a-~~~~g~~~~~ 165 (181)
|+++|.|..+.++.+ .++.++|||| .|.+. +++.| ..+||..|+.
T Consensus 33 F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g 81 (100)
T 3ns6_A 33 FSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDL 81 (100)
T ss_dssp HHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSS
T ss_pred HHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCC
Confidence 699999999999999 7899999999 88775 45555 7899999875
No 227
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.09 E-value=2.5e-06 Score=55.25 Aligned_cols=54 Identities=15% Similarity=0.037 Sum_probs=45.2
Q ss_pred CccccCCcc-----------CCCCCcceecCCCCC-CCCCCCccee-eecCCCch-hh-hcccCccccc
Q 030227 112 VPVPVNGME-----------ISHHSMRISEPPPPG-VTHESNGYET-HLNVTNYD-YS-RRVFGATLDS 165 (181)
Q Consensus 112 ~~~~~~~~~-----------f~~~g~i~~~~~~~~-~~~~~kG~gf-~f~~~~~~-~a-~~~~g~~~~~ 165 (181)
..+.+.+|| |.++|.|..+.++.+ .++.++|||| .|.+.+.+ .| +.+||..|+.
T Consensus 17 ~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 85 (94)
T 2e5h_A 17 STVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFG 85 (94)
T ss_dssp TSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETT
T ss_pred CEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCC
Confidence 678888888 899999999999999 7899999999 88776544 44 7899988863
No 228
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=98.09 E-value=3.8e-07 Score=58.78 Aligned_cols=45 Identities=7% Similarity=0.043 Sum_probs=39.7
Q ss_pred CCCCCcceecCCCCC-CCCCCCccee-eecCCCchhh-hcccCccccc
Q 030227 121 ISHHSMRISEPPPPG-VTHESNGYET-HLNVTNYDYS-RRVFGATLDS 165 (181)
Q Consensus 121 f~~~g~i~~~~~~~~-~~~~~kG~gf-~f~~~~~~~a-~~~~g~~~~~ 165 (181)
|+++|+|..+.++.+ .++.++|||| .|.+.+++.| ..+||..++.
T Consensus 22 F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~a~~a~~~l~g~~~~g 69 (90)
T 2ki2_A 22 FSQFGKVFNVKLIYDRETKKPKGFGFVEMQEESVSEAIAKLDNTDFMG 69 (90)
T ss_dssp HHHHTCCSEEEECCCSSSCCCCEEEEEEECTTHHHHHHHTSCSSCCSS
T ss_pred HHhcCCEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHhCCCEECC
Confidence 789999999999999 7899999999 9988886666 8899998874
No 229
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=98.08 E-value=2.2e-07 Score=60.09 Aligned_cols=45 Identities=7% Similarity=-0.039 Sum_probs=37.2
Q ss_pred CCCCC--cceecCCCCC-CCCCCCccee-eecCCCch-hh-hcccCccccc
Q 030227 121 ISHHS--MRISEPPPPG-VTHESNGYET-HLNVTNYD-YS-RRVFGATLDS 165 (181)
Q Consensus 121 f~~~g--~i~~~~~~~~-~~~~~kG~gf-~f~~~~~~-~a-~~~~g~~~~~ 165 (181)
|+++| +|..++++.+ .++.++|||| .|.+.+.+ .| +.+||..++.
T Consensus 22 F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~g 72 (90)
T 3p5t_L 22 VHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHG 72 (90)
T ss_dssp HHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSS
T ss_pred HHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCC
Confidence 79999 9999999999 7999999999 77766544 44 7899998874
No 230
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=98.08 E-value=8.2e-07 Score=58.28 Aligned_cols=54 Identities=11% Similarity=0.046 Sum_probs=45.2
Q ss_pred CccccCCcc-----------CCCCCccee--------cCCCCC-CCCCCCccee-eecCCCc-hhh-hcccCccccc
Q 030227 112 VPVPVNGME-----------ISHHSMRIS--------EPPPPG-VTHESNGYET-HLNVTNY-DYS-RRVFGATLDS 165 (181)
Q Consensus 112 ~~~~~~~~~-----------f~~~g~i~~--------~~~~~~-~~~~~kG~gf-~f~~~~~-~~a-~~~~g~~~~~ 165 (181)
..+.+.+|| |+++|.|.. ++++.+ .++.++|||| .|.+.+. +.| +.++|..++.
T Consensus 14 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g 90 (99)
T 2la6_A 14 NTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 90 (99)
T ss_dssp SEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 678888888 799999998 999999 8899999999 8877654 444 7799998874
No 231
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.06 E-value=2.6e-06 Score=55.70 Aligned_cols=54 Identities=13% Similarity=0.099 Sum_probs=44.2
Q ss_pred CccccCCcc-----------CCCCCcceecCCCCC-CCCCCCccee-eecCCCch-hh-hcccCccccc
Q 030227 112 VPVPVNGME-----------ISHHSMRISEPPPPG-VTHESNGYET-HLNVTNYD-YS-RRVFGATLDS 165 (181)
Q Consensus 112 ~~~~~~~~~-----------f~~~g~i~~~~~~~~-~~~~~kG~gf-~f~~~~~~-~a-~~~~g~~~~~ 165 (181)
..+++.+|| |.++|.|..+.++.+ .++.++|||| .|.+.+.+ .| ..+||..++.
T Consensus 9 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 77 (99)
T 1whw_A 9 GRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQG 77 (99)
T ss_dssp EEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 466777777 799999999999999 6999999999 88776544 44 7899988873
No 232
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.05 E-value=9.9e-07 Score=56.12 Aligned_cols=54 Identities=9% Similarity=0.154 Sum_probs=43.8
Q ss_pred CccccCCcc-----------CCCCCcceecCCCCC-CCCCCCccee-eecCCC-chhh-hcccCccccc
Q 030227 112 VPVPVNGME-----------ISHHSMRISEPPPPG-VTHESNGYET-HLNVTN-YDYS-RRVFGATLDS 165 (181)
Q Consensus 112 ~~~~~~~~~-----------f~~~g~i~~~~~~~~-~~~~~kG~gf-~f~~~~-~~~a-~~~~g~~~~~ 165 (181)
..+.+.+|| |+++|+|..+.++.+ .++.++|||| .|.+.+ ++.| +.+||..++.
T Consensus 6 ~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 74 (85)
T 1x4e_A 6 SGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQA 74 (85)
T ss_dssp CEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCE
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEee
Confidence 366677777 899999999999999 8899999999 887665 4444 7799988873
No 233
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.05 E-value=4.5e-06 Score=55.31 Aligned_cols=55 Identities=11% Similarity=0.066 Sum_probs=43.9
Q ss_pred CccccCCcc-----------CCCCCccee-cCCCCCCCCCCCccee-eecCCC-chhhhcccCcccccC
Q 030227 112 VPVPVNGME-----------ISHHSMRIS-EPPPPGVTHESNGYET-HLNVTN-YDYSRRVFGATLDSI 166 (181)
Q Consensus 112 ~~~~~~~~~-----------f~~~g~i~~-~~~~~~~~~~~kG~gf-~f~~~~-~~~a~~~~g~~~~~~ 166 (181)
..+++.+|| |.++|.|.. +.++.+.+++++|||| .|.+.+ ++.|.+.+|..++..
T Consensus 16 ~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr 84 (104)
T 1wg5_A 16 GFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHR 84 (104)
T ss_dssp CEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCcchhCCc
Confidence 678888988 899999987 8899999999999999 887665 444433388888743
No 234
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=98.05 E-value=5.2e-06 Score=56.10 Aligned_cols=54 Identities=9% Similarity=0.023 Sum_probs=45.1
Q ss_pred CccccCCcc-----------CCCCCcceecCCCCC-CCCCCCccee-eecCCC-chhh-hcccCccccc
Q 030227 112 VPVPVNGME-----------ISHHSMRISEPPPPG-VTHESNGYET-HLNVTN-YDYS-RRVFGATLDS 165 (181)
Q Consensus 112 ~~~~~~~~~-----------f~~~g~i~~~~~~~~-~~~~~kG~gf-~f~~~~-~~~a-~~~~g~~~~~ 165 (181)
..+++.+|| |.++|+|..+.++.+ .++.++|||| .|.+.+ ++.| +.+||..++.
T Consensus 41 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 109 (118)
T 2khc_A 41 CNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGT 109 (118)
T ss_dssp EEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETT
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 677888888 899999999999999 8899999999 776665 4445 7799988863
No 235
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.03 E-value=2.4e-06 Score=56.56 Aligned_cols=54 Identities=17% Similarity=0.165 Sum_probs=45.1
Q ss_pred CccccCCcc-----------CCCCCcceecCCCCC-CCCCCCccee-eecCCCchh-h-hcccCccccc
Q 030227 112 VPVPVNGME-----------ISHHSMRISEPPPPG-VTHESNGYET-HLNVTNYDY-S-RRVFGATLDS 165 (181)
Q Consensus 112 ~~~~~~~~~-----------f~~~g~i~~~~~~~~-~~~~~kG~gf-~f~~~~~~~-a-~~~~g~~~~~ 165 (181)
..+++.+|| |.++|.|..+.++.+ .++.++|||| .|.+.+.+. | ..++|..|+.
T Consensus 16 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 84 (105)
T 1x5u_A 16 ATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYG 84 (105)
T ss_dssp TEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECC
Confidence 678888888 799999999999999 6999999999 877665444 4 7789888873
No 236
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.01 E-value=1.1e-06 Score=57.85 Aligned_cols=54 Identities=15% Similarity=0.114 Sum_probs=44.9
Q ss_pred CccccCCcc-----------CCCCCcceecCCCCC-CCCCCCccee-eecCCCch-hh-hcccCccccc
Q 030227 112 VPVPVNGME-----------ISHHSMRISEPPPPG-VTHESNGYET-HLNVTNYD-YS-RRVFGATLDS 165 (181)
Q Consensus 112 ~~~~~~~~~-----------f~~~g~i~~~~~~~~-~~~~~kG~gf-~f~~~~~~-~a-~~~~g~~~~~ 165 (181)
..+++.+|| |.++|+|..+.++.+ .++.++|||| .|.+.+.+ .| +.+||..|+.
T Consensus 13 ~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 81 (102)
T 1x5s_A 13 GKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDG 81 (102)
T ss_dssp SEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTS
T ss_pred CEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 578888888 799999999999999 7899999999 88775544 44 7889988874
No 237
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.00 E-value=4.7e-06 Score=55.13 Aligned_cols=53 Identities=19% Similarity=0.120 Sum_probs=42.9
Q ss_pred CccccCCcc-----------CCCCCcceecCCCCC-CCCCCCccee-eecCCCchhh-hcccCcccc
Q 030227 112 VPVPVNGME-----------ISHHSMRISEPPPPG-VTHESNGYET-HLNVTNYDYS-RRVFGATLD 164 (181)
Q Consensus 112 ~~~~~~~~~-----------f~~~g~i~~~~~~~~-~~~~~kG~gf-~f~~~~~~~a-~~~~g~~~~ 164 (181)
..+++.+|| |.++|+|..+.++.+ .++.++|||| .|.+.+.+.+ .+.+|..|+
T Consensus 17 ~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~ 83 (105)
T 2dh8_A 17 GKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLD 83 (105)
T ss_dssp SEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEET
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeEC
Confidence 678888888 799999999999999 8899999999 8877664444 322777776
No 238
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.99 E-value=1.3e-06 Score=58.17 Aligned_cols=54 Identities=7% Similarity=0.041 Sum_probs=42.7
Q ss_pred CccccCCcc-----------CCCCCcceecCCCCCCCCCCCccee-eecCCCchhh-hcccCccccc
Q 030227 112 VPVPVNGME-----------ISHHSMRISEPPPPGVTHESNGYET-HLNVTNYDYS-RRVFGATLDS 165 (181)
Q Consensus 112 ~~~~~~~~~-----------f~~~g~i~~~~~~~~~~~~~kG~gf-~f~~~~~~~a-~~~~g~~~~~ 165 (181)
..+++.+|| |+++|+|..++++.+..+.++|||| .|.+.+.+.+ -+++|..++.
T Consensus 12 ~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~g 78 (103)
T 1s79_A 12 RSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKE 78 (103)
T ss_dssp GCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHTSSCCCCTT
T ss_pred CEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHHcCCCEECC
Confidence 467777777 7999999999999995599999999 8877655444 4478877763
No 239
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=97.99 E-value=1.9e-06 Score=58.09 Aligned_cols=53 Identities=8% Similarity=-0.029 Sum_probs=44.8
Q ss_pred CccccCCcc-----------CCCCCcceecCCCCC-CCCCCCccee-eecCCCch-hh-hcccCcccc
Q 030227 112 VPVPVNGME-----------ISHHSMRISEPPPPG-VTHESNGYET-HLNVTNYD-YS-RRVFGATLD 164 (181)
Q Consensus 112 ~~~~~~~~~-----------f~~~g~i~~~~~~~~-~~~~~kG~gf-~f~~~~~~-~a-~~~~g~~~~ 164 (181)
..+++.+|| |.++|.|..+.++.+ .++.++|||| .|.+.+.+ .| +.+||..|+
T Consensus 26 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 93 (115)
T 2cpz_A 26 ANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIG 93 (115)
T ss_dssp CCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEET
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEEC
Confidence 678888888 799999999999999 6899999999 88766544 44 788998887
No 240
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.95 E-value=6.3e-06 Score=54.96 Aligned_cols=53 Identities=13% Similarity=0.034 Sum_probs=44.2
Q ss_pred CccccCCcc-----------CCCCCcceecCCCCC-CCCCCCccee-eecCCCch-hh-hccc------Ccccc
Q 030227 112 VPVPVNGME-----------ISHHSMRISEPPPPG-VTHESNGYET-HLNVTNYD-YS-RRVF------GATLD 164 (181)
Q Consensus 112 ~~~~~~~~~-----------f~~~g~i~~~~~~~~-~~~~~kG~gf-~f~~~~~~-~a-~~~~------g~~~~ 164 (181)
..+++.+|| |.++|.|..+.++.+ .++.++|||| .|.+.+.+ .| ..++ |..++
T Consensus 16 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~ 89 (111)
T 1x4h_A 16 KTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLD 89 (111)
T ss_dssp CCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESS
T ss_pred CEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEc
Confidence 578888888 799999999999999 8899999999 88766544 44 7788 88877
No 241
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.95 E-value=3.9e-06 Score=54.51 Aligned_cols=53 Identities=13% Similarity=0.133 Sum_probs=43.2
Q ss_pred CccccCCcc-----------CCCCCcceec-CCCCC-CCCCCCccee-eecCCCchh-h-hcccCcccc
Q 030227 112 VPVPVNGME-----------ISHHSMRISE-PPPPG-VTHESNGYET-HLNVTNYDY-S-RRVFGATLD 164 (181)
Q Consensus 112 ~~~~~~~~~-----------f~~~g~i~~~-~~~~~-~~~~~kG~gf-~f~~~~~~~-a-~~~~g~~~~ 164 (181)
..+++.+|| |+++|.|..+ .++.+ .++.++|||| .|.+.+.+. | ..++|..++
T Consensus 6 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 74 (96)
T 1x5t_A 6 SGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLC 74 (96)
T ss_dssp CEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEET
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 366777777 7999999999 99999 8999999999 887665444 4 778988887
No 242
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=97.94 E-value=5e-06 Score=57.44 Aligned_cols=54 Identities=17% Similarity=0.137 Sum_probs=45.3
Q ss_pred CccccCCcc-----------CCCCCcceecCCCCC-CCCCCCccee-eecCCCc-hhh-hcccCccccc
Q 030227 112 VPVPVNGME-----------ISHHSMRISEPPPPG-VTHESNGYET-HLNVTNY-DYS-RRVFGATLDS 165 (181)
Q Consensus 112 ~~~~~~~~~-----------f~~~g~i~~~~~~~~-~~~~~kG~gf-~f~~~~~-~~a-~~~~g~~~~~ 165 (181)
..+.+.+|| |.++|+|..+.++.+ .++.++|||| .|.+.+. +.| ..++|..|+.
T Consensus 47 ~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g 115 (129)
T 2kxn_B 47 CCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDG 115 (129)
T ss_dssp SCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 578888888 799999999999999 8899999999 8876654 444 7799988873
No 243
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.94 E-value=3.3e-06 Score=55.71 Aligned_cols=53 Identities=13% Similarity=0.098 Sum_probs=44.4
Q ss_pred CccccCCcc-----------CCCCCcceecCCCCC-CCCCCCccee-eecCCCchh-h-hcccCcccc
Q 030227 112 VPVPVNGME-----------ISHHSMRISEPPPPG-VTHESNGYET-HLNVTNYDY-S-RRVFGATLD 164 (181)
Q Consensus 112 ~~~~~~~~~-----------f~~~g~i~~~~~~~~-~~~~~kG~gf-~f~~~~~~~-a-~~~~g~~~~ 164 (181)
..+++.+|| |+++|+|..+.++.+ .++.++|||| .|.+.+.+. | ..++|..|+
T Consensus 16 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 83 (103)
T 2cq0_A 16 ATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYD 83 (103)
T ss_dssp EEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEET
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeC
Confidence 577888888 899999999999999 7999999999 887665444 4 778998887
No 244
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=97.94 E-value=1.9e-06 Score=56.12 Aligned_cols=53 Identities=21% Similarity=0.121 Sum_probs=42.6
Q ss_pred ccccCCcc-----------CCCCCcceecCCCCC-CCCCCCccee-eecCCCchh-h-hcccCccccc
Q 030227 113 PVPVNGME-----------ISHHSMRISEPPPPG-VTHESNGYET-HLNVTNYDY-S-RRVFGATLDS 165 (181)
Q Consensus 113 ~~~~~~~~-----------f~~~g~i~~~~~~~~-~~~~~kG~gf-~f~~~~~~~-a-~~~~g~~~~~ 165 (181)
.+.+.+|| |+++|.|..+.++.+ .++.++|||| .|.+.+.+. | ..++|..++.
T Consensus 4 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 71 (96)
T 2x1f_A 4 VVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGS 71 (96)
T ss_dssp EEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred EEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECC
Confidence 45566666 799999999999999 7899999999 887665444 4 7889988873
No 245
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.94 E-value=3.1e-06 Score=55.51 Aligned_cols=54 Identities=9% Similarity=0.082 Sum_probs=44.9
Q ss_pred CccccCCcc-----------CCCCCcceecCCCCCCCCCCCccee-eecCCCch-hh-hcccCccccc
Q 030227 112 VPVPVNGME-----------ISHHSMRISEPPPPGVTHESNGYET-HLNVTNYD-YS-RRVFGATLDS 165 (181)
Q Consensus 112 ~~~~~~~~~-----------f~~~g~i~~~~~~~~~~~~~kG~gf-~f~~~~~~-~a-~~~~g~~~~~ 165 (181)
..+.+.+|| |.++|.|..+.++.+.++.++|||| .|.+.+.+ .| ..++|..++.
T Consensus 18 ~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 85 (100)
T 2do4_A 18 HKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKE 85 (100)
T ss_dssp SCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 578888888 8999999999999998899999999 88776544 44 7889988873
No 246
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.94 E-value=7.6e-06 Score=54.83 Aligned_cols=53 Identities=11% Similarity=0.031 Sum_probs=44.2
Q ss_pred CccccCCcc-----------CCCCCcce--------ecCCCCC-CCCCCCccee-eecCCCch-hh-hcccCcccc
Q 030227 112 VPVPVNGME-----------ISHHSMRI--------SEPPPPG-VTHESNGYET-HLNVTNYD-YS-RRVFGATLD 164 (181)
Q Consensus 112 ~~~~~~~~~-----------f~~~g~i~--------~~~~~~~-~~~~~kG~gf-~f~~~~~~-~a-~~~~g~~~~ 164 (181)
..+++.+|| |.++|.|. .+.++.+ .++.++|||| .|.+.+.+ .| ..++|..|+
T Consensus 16 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 16 SAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 578888888 79999998 6999999 8999999999 88776544 44 778998887
No 247
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.92 E-value=3.8e-06 Score=55.39 Aligned_cols=53 Identities=13% Similarity=0.120 Sum_probs=43.8
Q ss_pred CccccCCcc-----------CCCCCcceecCCCCCCCCCCCccee-eecCCCchh-h-hcccCccccc
Q 030227 112 VPVPVNGME-----------ISHHSMRISEPPPPGVTHESNGYET-HLNVTNYDY-S-RRVFGATLDS 165 (181)
Q Consensus 112 ~~~~~~~~~-----------f~~~g~i~~~~~~~~~~~~~kG~gf-~f~~~~~~~-a-~~~~g~~~~~ 165 (181)
..+++.+|| |.++|+|..+.++.+ ++.++|||| .|.+.+.+. | ..++|..++.
T Consensus 16 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 82 (103)
T 2d9p_A 16 VNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 82 (103)
T ss_dssp CCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC-SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 577888888 899999999999998 899999999 887665444 4 7789988873
No 248
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=97.92 E-value=3.1e-06 Score=52.41 Aligned_cols=45 Identities=9% Similarity=-0.086 Sum_probs=35.8
Q ss_pred CCCCCcceecCCCCC-CCCCCCccee-eecCCCchhh-hcccCccccc
Q 030227 121 ISHHSMRISEPPPPG-VTHESNGYET-HLNVTNYDYS-RRVFGATLDS 165 (181)
Q Consensus 121 f~~~g~i~~~~~~~~-~~~~~kG~gf-~f~~~~~~~a-~~~~g~~~~~ 165 (181)
|+++|+|..+.++.+ .++.++|||| .|.+.+.+.+ -+.+|..++.
T Consensus 20 F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g 67 (75)
T 1iqt_A 20 FGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGL 67 (75)
T ss_dssp HHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTT
T ss_pred HHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECC
Confidence 789999999999999 8899999999 8877754444 4457766653
No 249
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.92 E-value=8.4e-06 Score=53.96 Aligned_cols=54 Identities=11% Similarity=0.101 Sum_probs=44.2
Q ss_pred CccccCCcc-----------CCCCCcceecCCCCCC--CCCCCccee-eecCCCchh-h-hcc-cCccccc
Q 030227 112 VPVPVNGME-----------ISHHSMRISEPPPPGV--THESNGYET-HLNVTNYDY-S-RRV-FGATLDS 165 (181)
Q Consensus 112 ~~~~~~~~~-----------f~~~g~i~~~~~~~~~--~~~~kG~gf-~f~~~~~~~-a-~~~-~g~~~~~ 165 (181)
..+++.+|| |.++|.|..+.++.+. ++.++|||| .|.+.+.+. | ..+ ||..|..
T Consensus 16 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g 86 (107)
T 2cph_A 16 SKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYG 86 (107)
T ss_dssp CCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSS
T ss_pred CEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECC
Confidence 678888888 7999999999999883 889999999 887665444 4 778 8888873
No 250
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.91 E-value=0.00051 Score=45.17 Aligned_cols=73 Identities=15% Similarity=0.121 Sum_probs=59.0
Q ss_pred CCCCCeEEEcCCCCcCcHHHHHHHHHh-----cCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCe
Q 030227 5 SNSGCNVYIGNLDEKVSERVLYDILIQ-----AGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNR 79 (181)
Q Consensus 5 ~~~~~~l~V~nLp~~~te~~l~~~f~~-----~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~ 79 (181)
+..+++|.|.|||+.+.++.|.-+|+. -|+|..+.... +-|+|+|.+...|+..|+.-. +.+.+.
T Consensus 5 ~~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k~~--H~L~~~ 74 (104)
T 2dhx_A 5 SSGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQAD--HELHGA 74 (104)
T ss_dssp CCCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTCSC--CBSSSS
T ss_pred ccCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcCCc--ceecCe
Confidence 345789999999999999999999987 24778876643 479999999999999988423 378899
Q ss_pred EEEEEecC
Q 030227 80 TLRFALSG 87 (181)
Q Consensus 80 ~i~v~~a~ 87 (181)
+|.|....
T Consensus 75 ~LsV~P~~ 82 (104)
T 2dhx_A 75 QLSLRPAP 82 (104)
T ss_dssp BCEEEECC
T ss_pred EEEEEcCC
Confidence 99997643
No 251
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=97.91 E-value=5.6e-06 Score=54.68 Aligned_cols=54 Identities=9% Similarity=0.015 Sum_probs=44.8
Q ss_pred CccccCCcc-----------CCCCCcceecCCCCCCCCCCCccee-eecCCCch-hh-hcccCccccc
Q 030227 112 VPVPVNGME-----------ISHHSMRISEPPPPGVTHESNGYET-HLNVTNYD-YS-RRVFGATLDS 165 (181)
Q Consensus 112 ~~~~~~~~~-----------f~~~g~i~~~~~~~~~~~~~kG~gf-~f~~~~~~-~a-~~~~g~~~~~ 165 (181)
..+++.+|| |+++|.|..+.++.+.++.++|||| .|.+.+.+ .| ..++|..+..
T Consensus 16 ~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 83 (105)
T 2dnh_A 16 RKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMP 83 (105)
T ss_dssp CEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCT
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCC
Confidence 577888888 8999999999999998899999999 88766544 44 7789988765
No 252
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.91 E-value=9.5e-06 Score=53.56 Aligned_cols=52 Identities=8% Similarity=0.022 Sum_probs=42.8
Q ss_pred CccccCCcc-----------CCCCCcceecCCCCC-CC-CCCCccee-eecCCCchhh-hcccCcccc
Q 030227 112 VPVPVNGME-----------ISHHSMRISEPPPPG-VT-HESNGYET-HLNVTNYDYS-RRVFGATLD 164 (181)
Q Consensus 112 ~~~~~~~~~-----------f~~~g~i~~~~~~~~-~~-~~~kG~gf-~f~~~~~~~a-~~~~g~~~~ 164 (181)
..+++.+|| |.++| |..+.++.+ .+ +.++|||| .|.+.+.+.+ ..++|..|+
T Consensus 16 ~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~ 82 (104)
T 1wi8_A 16 YTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLG 82 (104)
T ss_dssp EEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEET
T ss_pred CEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeC
Confidence 678888888 89999 999999999 66 89999999 8877654444 778888777
No 253
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=97.90 E-value=4.3e-06 Score=58.65 Aligned_cols=54 Identities=11% Similarity=0.009 Sum_probs=42.6
Q ss_pred CccccCCcc-----------CCCCCcceecCCCCCCCCCCCccee-eecCCC-chhhhcccCcccccC
Q 030227 112 VPVPVNGME-----------ISHHSMRISEPPPPGVTHESNGYET-HLNVTN-YDYSRRVFGATLDSI 166 (181)
Q Consensus 112 ~~~~~~~~~-----------f~~~g~i~~~~~~~~~~~~~kG~gf-~f~~~~-~~~a~~~~g~~~~~~ 166 (181)
..+++.+|| |.++| +..+.++.|..++++|||| +|.+.+ ++.|.++||..|+..
T Consensus 47 ~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR 113 (139)
T 2hgn_A 47 HCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHR 113 (139)
T ss_dssp CCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHTTCCSCSSSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHHhhCCCEECCE
Confidence 578888888 78999 7799999996699999999 886654 444467788877743
No 254
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=97.90 E-value=8.8e-06 Score=56.43 Aligned_cols=54 Identities=11% Similarity=0.091 Sum_probs=45.3
Q ss_pred CccccCCcc-----------CCCCCcceecCCCCC-CCCCCCccee-eecCCC-chhh-hcccCccccc
Q 030227 112 VPVPVNGME-----------ISHHSMRISEPPPPG-VTHESNGYET-HLNVTN-YDYS-RRVFGATLDS 165 (181)
Q Consensus 112 ~~~~~~~~~-----------f~~~g~i~~~~~~~~-~~~~~kG~gf-~f~~~~-~~~a-~~~~g~~~~~ 165 (181)
..+++.+|| |.++|+|..+.++.+ .++.++|||| .|.+.+ ++.| +.++|..|+.
T Consensus 64 ~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 132 (140)
T 2ku7_A 64 RVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFG 132 (140)
T ss_dssp CEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETT
T ss_pred cEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 678899998 799999999999999 8899999999 887654 4444 7889988763
No 255
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=97.89 E-value=2.2e-06 Score=54.70 Aligned_cols=53 Identities=13% Similarity=0.021 Sum_probs=42.3
Q ss_pred CccccCCcc-----------CCCCCcceecCCCCC-CCCCCCccee-eecCCCchhh-hcccCcccc
Q 030227 112 VPVPVNGME-----------ISHHSMRISEPPPPG-VTHESNGYET-HLNVTNYDYS-RRVFGATLD 164 (181)
Q Consensus 112 ~~~~~~~~~-----------f~~~g~i~~~~~~~~-~~~~~kG~gf-~f~~~~~~~a-~~~~g~~~~ 164 (181)
..+++.+|| |+++|+|..+.++.+ .++.++|||| .|.+.+.+.+ .+++|..|+
T Consensus 12 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~ 78 (87)
T 3s7r_A 12 GKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLD 78 (87)
T ss_dssp TEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEET
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEEC
Confidence 577888888 899999999999999 7899999999 8877765544 555666554
No 256
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=97.86 E-value=2.1e-06 Score=57.45 Aligned_cols=54 Identities=15% Similarity=0.094 Sum_probs=45.1
Q ss_pred CccccCCcc-----------CCCCCcceecCCCCC-CCCCCCccee-eecCCCchhh--hcccCccccc
Q 030227 112 VPVPVNGME-----------ISHHSMRISEPPPPG-VTHESNGYET-HLNVTNYDYS--RRVFGATLDS 165 (181)
Q Consensus 112 ~~~~~~~~~-----------f~~~g~i~~~~~~~~-~~~~~kG~gf-~f~~~~~~~a--~~~~g~~~~~ 165 (181)
..+++.+|| |+++|.|..+.++.+ .++.++|||| .|.+.+.+.. +.++|..++.
T Consensus 27 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g 95 (108)
T 2jrs_A 27 MRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAG 95 (108)
T ss_dssp EEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 678888888 899999999999998 8899999999 8876654444 7789988874
No 257
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=97.86 E-value=2e-06 Score=54.54 Aligned_cols=54 Identities=11% Similarity=0.087 Sum_probs=44.2
Q ss_pred CccccCCcc-----------CCCCCcceecCCCCC-CCCCCCccee-eecCCCchh-h-hcccCccccc
Q 030227 112 VPVPVNGME-----------ISHHSMRISEPPPPG-VTHESNGYET-HLNVTNYDY-S-RRVFGATLDS 165 (181)
Q Consensus 112 ~~~~~~~~~-----------f~~~g~i~~~~~~~~-~~~~~kG~gf-~f~~~~~~~-a-~~~~g~~~~~ 165 (181)
..+.+.+|| |+++|.|..+.++.+ .++.++|||| .|.+.+.+. | +.+||..++.
T Consensus 8 ~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 76 (85)
T 3mdf_A 8 RVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFG 76 (85)
T ss_dssp SEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 467777777 799999999999999 8899999999 887665444 4 7899998863
No 258
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=97.84 E-value=1.3e-06 Score=55.16 Aligned_cols=44 Identities=16% Similarity=0.132 Sum_probs=37.5
Q ss_pred CCCCCcceecCCCCC-CCCCCCccee-eecCCCchh-h-hcccCcccc
Q 030227 121 ISHHSMRISEPPPPG-VTHESNGYET-HLNVTNYDY-S-RRVFGATLD 164 (181)
Q Consensus 121 f~~~g~i~~~~~~~~-~~~~~kG~gf-~f~~~~~~~-a-~~~~g~~~~ 164 (181)
|+++|.|..+.++.+ .++.++|||| .|.+.+.+. | ..++|..++
T Consensus 22 f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~ 69 (83)
T 3md1_A 22 FKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLN 69 (83)
T ss_dssp HTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEET
T ss_pred HHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeC
Confidence 799999999999999 8899999999 887665444 4 779999887
No 259
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.84 E-value=4.3e-06 Score=55.18 Aligned_cols=53 Identities=15% Similarity=0.046 Sum_probs=43.2
Q ss_pred CccccCCcc-----------CCC-CCcceecCCCCCCCCCCCccee-eecCCCc-hhh-hcccCcc-cc
Q 030227 112 VPVPVNGME-----------ISH-HSMRISEPPPPGVTHESNGYET-HLNVTNY-DYS-RRVFGAT-LD 164 (181)
Q Consensus 112 ~~~~~~~~~-----------f~~-~g~i~~~~~~~~~~~~~kG~gf-~f~~~~~-~~a-~~~~g~~-~~ 164 (181)
..+++.+|| |.+ +|.|..+.++.+.++.++|||| .|.+.+. +.| ..++|.. ++
T Consensus 10 ~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~ 78 (104)
T 2dhg_A 10 YSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLG 78 (104)
T ss_dssp CCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSS
T ss_pred cEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccC
Confidence 577888888 788 9999999999988889999999 8876654 444 7788887 76
No 260
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.83 E-value=6e-06 Score=54.43 Aligned_cols=52 Identities=15% Similarity=0.008 Sum_probs=42.8
Q ss_pred CccccCCcc-----------CCCCCcceecCCCCC-CCCCCCccee-eecCCCchhh-hcccCcccc
Q 030227 112 VPVPVNGME-----------ISHHSMRISEPPPPG-VTHESNGYET-HLNVTNYDYS-RRVFGATLD 164 (181)
Q Consensus 112 ~~~~~~~~~-----------f~~~g~i~~~~~~~~-~~~~~kG~gf-~f~~~~~~~a-~~~~g~~~~ 164 (181)
..+++.+|| |.+++ |..+.++.+ .++.++|||| .|.+.+.+.+ .+++|..|+
T Consensus 16 ~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~ 81 (103)
T 2dng_A 16 YTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLG 81 (103)
T ss_dssp EEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEET
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHHhhCCCeEC
Confidence 577888888 78886 999999999 7899999999 8877654444 778888887
No 261
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.83 E-value=4.8e-05 Score=49.55 Aligned_cols=56 Identities=18% Similarity=0.176 Sum_probs=46.8
Q ss_pred CCeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhC
Q 030227 8 GCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFS 71 (181)
Q Consensus 8 ~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~ 71 (181)
...||+-++|.+|...||.++|+.|| -..|+++.| ..|||.|.+++.|..|+..+.
T Consensus 15 r~HVf~l~FP~ewKt~DI~~lFs~fg-gv~I~WidD-------TsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 15 RDHVLHVTFPKEWKTSDLYQLFSAFG-NIQISWIDD-------TSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCSEEEEECCTTCCHHHHHHHHTTTC-SCCCEEEET-------TEEEEECSCHHHHHHHHHHHH
T ss_pred CCeEEEEeCChhhhhHHHHHHhhccC-CEEEEEEcC-------CeEEEEecCHHHHHHHHHhcc
Confidence 33444449999999999999999999 567788877 379999999999999998763
No 262
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.83 E-value=9.8e-06 Score=53.34 Aligned_cols=52 Identities=8% Similarity=0.122 Sum_probs=41.9
Q ss_pred CccccCCcc-----------CCCCCcceecCCCCCCCCCCCccee-eecCCCch-hh-hcccCcccc
Q 030227 112 VPVPVNGME-----------ISHHSMRISEPPPPGVTHESNGYET-HLNVTNYD-YS-RRVFGATLD 164 (181)
Q Consensus 112 ~~~~~~~~~-----------f~~~g~i~~~~~~~~~~~~~kG~gf-~f~~~~~~-~a-~~~~g~~~~ 164 (181)
..+++.+|| |.++|.|..+.++.+..+ ++|||| .|.+.+.+ .| ..++|..|+
T Consensus 16 ~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~ 81 (103)
T 2cq3_A 16 KRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVVE 81 (103)
T ss_dssp CEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTT-TCCEEEEEESCHHHHHHHHHHHTTCEET
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC-CcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 678888888 899999999999988544 999999 88765544 44 778888887
No 263
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.83 E-value=7.7e-06 Score=54.87 Aligned_cols=55 Identities=11% Similarity=0.097 Sum_probs=45.7
Q ss_pred CccccCCcc-----------CCCCCcceecCCCCCCCCCCCccee-eecCCC-chhh-hcccCcccccC
Q 030227 112 VPVPVNGME-----------ISHHSMRISEPPPPGVTHESNGYET-HLNVTN-YDYS-RRVFGATLDSI 166 (181)
Q Consensus 112 ~~~~~~~~~-----------f~~~g~i~~~~~~~~~~~~~kG~gf-~f~~~~-~~~a-~~~~g~~~~~~ 166 (181)
..+++.+|| |.++|+|..+.++.+.++.++|||| .|.+.+ ++.| ..+||..++..
T Consensus 26 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~ 94 (114)
T 1x5o_A 26 TNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTP 94 (114)
T ss_dssp TEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCC
Confidence 577888888 8999999999999998889999999 776665 4444 88999999743
No 264
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=97.82 E-value=3.7e-06 Score=56.14 Aligned_cols=53 Identities=13% Similarity=0.029 Sum_probs=44.5
Q ss_pred CccccCCcc-----------CCCCCcceecCCCCC-CCCCCCccee-eecCCCchh-h-hcccCcccc
Q 030227 112 VPVPVNGME-----------ISHHSMRISEPPPPG-VTHESNGYET-HLNVTNYDY-S-RRVFGATLD 164 (181)
Q Consensus 112 ~~~~~~~~~-----------f~~~g~i~~~~~~~~-~~~~~kG~gf-~f~~~~~~~-a-~~~~g~~~~ 164 (181)
..+++.+|| |+++|.|..+.++.+ .++.++|||| .|.+.+.+. | ..++|..|+
T Consensus 27 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 94 (110)
T 1oo0_B 27 WILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIM 94 (110)
T ss_dssp EEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 567888888 799999999999999 8999999999 887665444 4 778998887
No 265
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=97.82 E-value=1.3e-06 Score=55.75 Aligned_cols=54 Identities=15% Similarity=0.062 Sum_probs=43.4
Q ss_pred CccccCCcc-----------CCCCCcceecCCCCC-CCCCCCccee-eecCCCch-hh-hcccCccccc
Q 030227 112 VPVPVNGME-----------ISHHSMRISEPPPPG-VTHESNGYET-HLNVTNYD-YS-RRVFGATLDS 165 (181)
Q Consensus 112 ~~~~~~~~~-----------f~~~g~i~~~~~~~~-~~~~~kG~gf-~f~~~~~~-~a-~~~~g~~~~~ 165 (181)
..+.+.+|| |+++|.|..+.++.+ .++.++|||| .|.+.+.+ .| ..++|..++.
T Consensus 7 ~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 75 (87)
T 3bs9_A 7 FHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGG 75 (87)
T ss_dssp EEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 456677777 899999999999999 7999999999 88766544 44 7789988763
No 266
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.82 E-value=6.6e-06 Score=51.06 Aligned_cols=43 Identities=14% Similarity=0.015 Sum_probs=33.3
Q ss_pred CCCCCcceecCCCCC-CCCCCCccee-eecCCCc-hhh-hcccCcccc
Q 030227 121 ISHHSMRISEPPPPG-VTHESNGYET-HLNVTNY-DYS-RRVFGATLD 164 (181)
Q Consensus 121 f~~~g~i~~~~~~~~-~~~~~kG~gf-~f~~~~~-~~a-~~~~g~~~~ 164 (181)
|+++|+|..+.++.+ .++.++|||| .|.+.+. +.| ..++ ..++
T Consensus 21 F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~ 67 (77)
T 1uaw_A 21 FGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELD 67 (77)
T ss_dssp HTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCS
T ss_pred HHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccC
Confidence 799999999999999 7899999999 7766654 444 5444 4444
No 267
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.81 E-value=2.6e-05 Score=52.26 Aligned_cols=54 Identities=11% Similarity=-0.075 Sum_probs=44.5
Q ss_pred CccccCCcc-----------CCCCCcceecCCCCC-CCCCCCccee-eecCCCchh-hhcccCccccc
Q 030227 112 VPVPVNGME-----------ISHHSMRISEPPPPG-VTHESNGYET-HLNVTNYDY-SRRVFGATLDS 165 (181)
Q Consensus 112 ~~~~~~~~~-----------f~~~g~i~~~~~~~~-~~~~~kG~gf-~f~~~~~~~-a~~~~g~~~~~ 165 (181)
..+++.+|| |.++|.|..+.++.+ .++.++|||| .|.+.+.+. |..+||..|+.
T Consensus 26 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g 93 (114)
T 2cq4_A 26 RTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLG 93 (114)
T ss_dssp TEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETT
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeCC
Confidence 578888988 799999999999999 7899999999 887665444 47788887763
No 268
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=97.81 E-value=5.8e-06 Score=56.51 Aligned_cols=53 Identities=13% Similarity=0.011 Sum_probs=44.7
Q ss_pred CccccCCcc-----------CCCCCcceecCCCCC-CCCCCCccee-eecCCCchhh--hcccCcccc
Q 030227 112 VPVPVNGME-----------ISHHSMRISEPPPPG-VTHESNGYET-HLNVTNYDYS--RRVFGATLD 164 (181)
Q Consensus 112 ~~~~~~~~~-----------f~~~g~i~~~~~~~~-~~~~~kG~gf-~f~~~~~~~a--~~~~g~~~~ 164 (181)
..+++.+|| |.++|.|..+.++.+ .++.++|||| .|.+.+.+.+ ..|||..|+
T Consensus 23 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 90 (126)
T 3ex7_B 23 WILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLM 90 (126)
T ss_dssp EEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeC
Confidence 577888888 799999999999999 7999999999 8877655444 678998887
No 269
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.81 E-value=2.7e-06 Score=55.11 Aligned_cols=53 Identities=17% Similarity=0.135 Sum_probs=44.2
Q ss_pred CccccCCcc-----------CCCCCcceecCCCCC-CCCCCCccee-eecCCCchh-h-hcccCcccc
Q 030227 112 VPVPVNGME-----------ISHHSMRISEPPPPG-VTHESNGYET-HLNVTNYDY-S-RRVFGATLD 164 (181)
Q Consensus 112 ~~~~~~~~~-----------f~~~g~i~~~~~~~~-~~~~~kG~gf-~f~~~~~~~-a-~~~~g~~~~ 164 (181)
..+.+.+|| |.++|.|..+.++.+ .++.++|||| .|.+.+.+. | ..++|..++
T Consensus 16 ~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 83 (95)
T 2cqc_A 16 CCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELD 83 (95)
T ss_dssp GCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEET
T ss_pred CEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 577888888 799999999999999 7899999999 887665444 4 778998886
No 270
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.81 E-value=4e-06 Score=54.72 Aligned_cols=54 Identities=7% Similarity=-0.066 Sum_probs=44.4
Q ss_pred CccccCCcc-----------CCCCCcceecCCCCC-CCCCCCccee-eecCCC-chhh-hcccCccccc
Q 030227 112 VPVPVNGME-----------ISHHSMRISEPPPPG-VTHESNGYET-HLNVTN-YDYS-RRVFGATLDS 165 (181)
Q Consensus 112 ~~~~~~~~~-----------f~~~g~i~~~~~~~~-~~~~~kG~gf-~f~~~~-~~~a-~~~~g~~~~~ 165 (181)
..+++.+|| |.++|.|..+.++.+ .++.++|||| .|.+.+ ++.| +.++|..|+.
T Consensus 16 ~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g 84 (98)
T 2cqp_A 16 TIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGS 84 (98)
T ss_dssp EEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETT
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCC
Confidence 578888888 899999998888887 8899999999 887665 4444 7899988873
No 271
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=97.80 E-value=5.2e-06 Score=56.21 Aligned_cols=53 Identities=13% Similarity=0.150 Sum_probs=43.6
Q ss_pred CccccCCcc-----------CCCCCcceecCCCCCCCCCCCccee-eecCCCch-hh-hcccCcccc
Q 030227 112 VPVPVNGME-----------ISHHSMRISEPPPPGVTHESNGYET-HLNVTNYD-YS-RRVFGATLD 164 (181)
Q Consensus 112 ~~~~~~~~~-----------f~~~g~i~~~~~~~~~~~~~kG~gf-~f~~~~~~-~a-~~~~g~~~~ 164 (181)
..+++.+|| |+++|.|..+.++.+.++.++|||| .|.+.+.+ .| ..+||..++
T Consensus 8 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~ 74 (116)
T 2fy1_A 8 GKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLH 74 (116)
T ss_dssp CEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 466777777 7999999999999998999999999 88776544 44 778988887
No 272
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=97.80 E-value=4e-06 Score=54.01 Aligned_cols=53 Identities=11% Similarity=0.120 Sum_probs=42.4
Q ss_pred CccccCCcc-----------CCCCCcceecCCCCCCCCCCCccee-eecCCCch-hh-hcccCccccc
Q 030227 112 VPVPVNGME-----------ISHHSMRISEPPPPGVTHESNGYET-HLNVTNYD-YS-RRVFGATLDS 165 (181)
Q Consensus 112 ~~~~~~~~~-----------f~~~g~i~~~~~~~~~~~~~kG~gf-~f~~~~~~-~a-~~~~g~~~~~ 165 (181)
..+++.+|| |.++|.|..+.++. +++.++|||| .|.+.+.+ .| ..++|..++.
T Consensus 9 ~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~-~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g 75 (92)
T 2dgv_A 9 CQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKM-ENGKSKGCGVVKFESPEVAERACRMMNGMKLSG 75 (92)
T ss_dssp CEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEE-SSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTT
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEc-cCCCcceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 577788888 79999999998887 4888999999 88766544 44 7789988874
No 273
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.78 E-value=1.1e-05 Score=54.11 Aligned_cols=53 Identities=11% Similarity=-0.071 Sum_probs=43.0
Q ss_pred CccccCCcc-----------CCCCCcceecCCCCCCCCCCCccee-eecCCC-chhhhcccCccccc
Q 030227 112 VPVPVNGME-----------ISHHSMRISEPPPPGVTHESNGYET-HLNVTN-YDYSRRVFGATLDS 165 (181)
Q Consensus 112 ~~~~~~~~~-----------f~~~g~i~~~~~~~~~~~~~kG~gf-~f~~~~-~~~a~~~~g~~~~~ 165 (181)
..+.+.+|| |.++ .|..+.++.|..++++|||| .|.+.+ ++.|.++||..|+.
T Consensus 17 ~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~g 82 (109)
T 2dnn_A 17 LYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRMLMIQ 82 (109)
T ss_dssp HEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHHHTTTEEETT
T ss_pred CEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECC
Confidence 678899998 7888 89999999996699999999 887764 44447788888873
No 274
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.78 E-value=0.00041 Score=44.84 Aligned_cols=79 Identities=15% Similarity=0.117 Sum_probs=61.0
Q ss_pred CeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCC--CcceEEEEEeCCHHHHHHHHHHhCCCeeeCCe----EEE
Q 030227 9 CNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETD--KPKGFAFVEYESEEIADYAIKLFSGIVTLYNR----TLR 82 (181)
Q Consensus 9 ~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~--~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~----~i~ 82 (181)
++|.|.+||+..||+++.+.+.....+....++..+.+. ...+-|||.|.+.+++....+.++|..-++.+ +..
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~ 81 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAI 81 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeE
Confidence 578999999999999999999998877666666654333 24467999999999999999999998444443 344
Q ss_pred EEecC
Q 030227 83 FALSG 87 (181)
Q Consensus 83 v~~a~ 87 (181)
|++|.
T Consensus 82 VE~AP 86 (91)
T 1uw4_A 82 VEFAP 86 (91)
T ss_dssp EEECS
T ss_pred EEEcC
Confidence 55553
No 275
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.78 E-value=1.5e-05 Score=53.68 Aligned_cols=53 Identities=9% Similarity=0.055 Sum_probs=43.1
Q ss_pred CccccCCcc-----------CCCCCcc-eecCCCCCCCCCCCccee-eecCCCchh-hhcccCcccc
Q 030227 112 VPVPVNGME-----------ISHHSMR-ISEPPPPGVTHESNGYET-HLNVTNYDY-SRRVFGATLD 164 (181)
Q Consensus 112 ~~~~~~~~~-----------f~~~g~i-~~~~~~~~~~~~~kG~gf-~f~~~~~~~-a~~~~g~~~~ 164 (181)
..+++.+|| |.++|.| ..+.++.+.++.++|||| .|.+.+.+. |.+++|..|+
T Consensus 16 ~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~ 82 (114)
T 2cpy_A 16 VCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLN 82 (114)
T ss_dssp CEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGGCSEEET
T ss_pred cEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCCCccC
Confidence 578888888 8999999 889999999999999999 887765444 4444888776
No 276
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=97.77 E-value=1.3e-05 Score=52.55 Aligned_cols=53 Identities=8% Similarity=0.017 Sum_probs=42.9
Q ss_pred CccccCCcc-----------CCCCCcceecCCCCC--CCCCCCccee-eecCCCchhh-hcccCccccc
Q 030227 112 VPVPVNGME-----------ISHHSMRISEPPPPG--VTHESNGYET-HLNVTNYDYS-RRVFGATLDS 165 (181)
Q Consensus 112 ~~~~~~~~~-----------f~~~g~i~~~~~~~~--~~~~~kG~gf-~f~~~~~~~a-~~~~g~~~~~ 165 (181)
..+++.+|| |+++| |..+.++.+ .++.++|||| .|.+.+.+.. .+++|..++.
T Consensus 20 ~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g 87 (100)
T 2j76_E 20 YTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGN 87 (100)
T ss_dssp CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTT
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECC
Confidence 677888888 89999 999999998 3899999999 8876654444 7788888764
No 277
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=97.77 E-value=2.6e-06 Score=58.87 Aligned_cols=44 Identities=5% Similarity=-0.210 Sum_probs=36.4
Q ss_pred CCCCCcceecCCCCC-CCCCCCccee-eecC-----CC----chhh-h--cccCcccc
Q 030227 121 ISHHSMRISEPPPPG-VTHESNGYET-HLNV-----TN----YDYS-R--RVFGATLD 164 (181)
Q Consensus 121 f~~~g~i~~~~~~~~-~~~~~kG~gf-~f~~-----~~----~~~a-~--~~~g~~~~ 164 (181)
|++||+|..+.+..| .||.|+|||| .|.+ ++ +..| . +++|..++
T Consensus 27 Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~I~ 84 (136)
T 2j8a_A 27 FKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCFIM 84 (136)
T ss_dssp HHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEEET
T ss_pred HHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCeec
Confidence 899999999999999 9999999999 9985 44 3444 4 67887776
No 278
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.77 E-value=2.9e-06 Score=55.47 Aligned_cols=56 Identities=13% Similarity=0.128 Sum_probs=45.7
Q ss_pred CccccCCcc-----------CCCCCcce-ecCCCCC-CCCCCCccee-eecCCC-chhh-hcccCcccccCC
Q 030227 112 VPVPVNGME-----------ISHHSMRI-SEPPPPG-VTHESNGYET-HLNVTN-YDYS-RRVFGATLDSIS 167 (181)
Q Consensus 112 ~~~~~~~~~-----------f~~~g~i~-~~~~~~~-~~~~~kG~gf-~f~~~~-~~~a-~~~~g~~~~~~~ 167 (181)
..+++.+|| |.++|+|. .+.++.+ .++.++|||| .|.+.+ ++.| +.+||..++...
T Consensus 10 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (99)
T 2div_A 10 ASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGAT 81 (99)
T ss_dssp SEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCS
T ss_pred cEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCC
Confidence 477788888 79999999 9999999 7999999999 887665 4444 779998887544
No 279
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.76 E-value=8.5e-06 Score=53.90 Aligned_cols=54 Identities=11% Similarity=0.014 Sum_probs=42.8
Q ss_pred CccccCCcc-----------CCCCCcceecCCCCCCCCCCCccee-eecCCCch-hhhcccCcccccC
Q 030227 112 VPVPVNGME-----------ISHHSMRISEPPPPGVTHESNGYET-HLNVTNYD-YSRRVFGATLDSI 166 (181)
Q Consensus 112 ~~~~~~~~~-----------f~~~g~i~~~~~~~~~~~~~kG~gf-~f~~~~~~-~a~~~~g~~~~~~ 166 (181)
..+++.+|| |.++| +..+.++.+.+++++|||| .|.+.+.+ .|.++||..|+..
T Consensus 16 ~~l~V~nLp~~~te~~l~~~F~~~G-~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr 82 (102)
T 1wez_A 16 HCVHMRGLPYRATENDIYNFFSPLN-PMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHR 82 (102)
T ss_dssp CEEEEESCCTTCCHHHHHHSSCSCC-CSEEEEEESSSSCEEEEEEEECSSSHHHHHHHTTSSCCSSSS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHcC-ceEEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeECCc
Confidence 678888888 78999 5599999998899999999 88776544 4456788888743
No 280
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.74 E-value=1.7e-05 Score=53.38 Aligned_cols=52 Identities=13% Similarity=0.065 Sum_probs=42.5
Q ss_pred CccccCCcc-----------CCCCCcceecCCCCC-CCCCCCccee-eecCCCchh-h-hcccCcccc
Q 030227 112 VPVPVNGME-----------ISHHSMRISEPPPPG-VTHESNGYET-HLNVTNYDY-S-RRVFGATLD 164 (181)
Q Consensus 112 ~~~~~~~~~-----------f~~~g~i~~~~~~~~-~~~~~kG~gf-~f~~~~~~~-a-~~~~g~~~~ 164 (181)
..+++.+|| |.++|.|..+.++.+ .++.++|||| .|.+.+.+. | +.+++ .|+
T Consensus 18 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~ 84 (116)
T 2cqd_A 18 TKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IID 84 (116)
T ss_dssp SEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EET
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCC
Confidence 678888888 799999999999999 8899999999 887765444 4 66676 565
No 281
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=97.74 E-value=1.8e-06 Score=61.79 Aligned_cols=54 Identities=17% Similarity=0.152 Sum_probs=45.3
Q ss_pred CccccCCcc-----------CCCCC--cceecCCCCC-CCCCCCccee-eecCCC-chhh-hcccCccccc
Q 030227 112 VPVPVNGME-----------ISHHS--MRISEPPPPG-VTHESNGYET-HLNVTN-YDYS-RRVFGATLDS 165 (181)
Q Consensus 112 ~~~~~~~~~-----------f~~~g--~i~~~~~~~~-~~~~~kG~gf-~f~~~~-~~~a-~~~~g~~~~~ 165 (181)
..+++.+|| |+++| +|..++++.| .++.++|||| .|.+.+ ++.| ..+||..|+.
T Consensus 56 ~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~G 126 (156)
T 3n9u_C 56 AAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNG 126 (156)
T ss_dssp CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETT
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 578888888 78999 9999999999 8999999999 887664 4445 8889988873
No 282
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=97.74 E-value=2.2e-05 Score=52.17 Aligned_cols=54 Identities=6% Similarity=-0.002 Sum_probs=42.2
Q ss_pred CccccCCcc-----------CCCCCc---ceecCCCCCCCCCCCccee-eecCCC-chhhhcccCccccc
Q 030227 112 VPVPVNGME-----------ISHHSM---RISEPPPPGVTHESNGYET-HLNVTN-YDYSRRVFGATLDS 165 (181)
Q Consensus 112 ~~~~~~~~~-----------f~~~g~---i~~~~~~~~~~~~~kG~gf-~f~~~~-~~~a~~~~g~~~~~ 165 (181)
..+++.+|| |.++|. |..+.++.+..++++|||| .|.+.+ ++.|.+++|..++.
T Consensus 12 ~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~g 81 (107)
T 2lmi_A 12 FLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQ 81 (107)
T ss_dssp CEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHTTTTCCSSS
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCcceeCC
Confidence 567788888 788887 8999999995599999999 887665 44444488888873
No 283
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=97.73 E-value=1.9e-05 Score=53.82 Aligned_cols=54 Identities=13% Similarity=0.118 Sum_probs=45.1
Q ss_pred CccccCCcc-----------CCCCCcceecCCCCCCCCCCCccee-eecCCCc-hhh-hcccCccccc
Q 030227 112 VPVPVNGME-----------ISHHSMRISEPPPPGVTHESNGYET-HLNVTNY-DYS-RRVFGATLDS 165 (181)
Q Consensus 112 ~~~~~~~~~-----------f~~~g~i~~~~~~~~~~~~~kG~gf-~f~~~~~-~~a-~~~~g~~~~~ 165 (181)
..+++.+|| |.++|+|..+.++.+.++.++|||| .|.+.+. +.| ..++|..++.
T Consensus 36 ~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 103 (124)
T 2kt5_A 36 AKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDG 103 (124)
T ss_dssp EEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 678888888 7999999999999998899999999 8876654 444 7799988874
No 284
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=97.73 E-value=2.5e-06 Score=56.56 Aligned_cols=54 Identities=13% Similarity=0.011 Sum_probs=44.8
Q ss_pred CccccCCcc-----------CCCCCcceecCCCCC-CCCCCCccee-eecCCCch-hh-hcccCccccc
Q 030227 112 VPVPVNGME-----------ISHHSMRISEPPPPG-VTHESNGYET-HLNVTNYD-YS-RRVFGATLDS 165 (181)
Q Consensus 112 ~~~~~~~~~-----------f~~~g~i~~~~~~~~-~~~~~kG~gf-~f~~~~~~-~a-~~~~g~~~~~ 165 (181)
..+++.+|| |+++|.|..+.++.+ .++.++|||| .|.+.+.+ .| ..++|..++.
T Consensus 24 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 92 (106)
T 1p27_B 24 WILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMG 92 (106)
T ss_dssp EEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSS
T ss_pred CEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECC
Confidence 467888888 799999999999999 8899999999 88776544 44 7789988873
No 285
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=97.73 E-value=8.4e-06 Score=51.32 Aligned_cols=45 Identities=16% Similarity=0.113 Sum_probs=36.9
Q ss_pred CCCCCcceecCCCCCCCCCCCccee-eecCCC-chhh-hcccCcccccC
Q 030227 121 ISHHSMRISEPPPPGVTHESNGYET-HLNVTN-YDYS-RRVFGATLDSI 166 (181)
Q Consensus 121 f~~~g~i~~~~~~~~~~~~~kG~gf-~f~~~~-~~~a-~~~~g~~~~~~ 166 (181)
|+++|.|..+.++ ..++.++|||| .|.+.+ ++.| ..+||..++..
T Consensus 28 F~~~G~i~~v~i~-~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 75 (81)
T 2krb_A 28 FSKFGKITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ 75 (81)
T ss_dssp HHTTCCEEEEECC-CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSS
T ss_pred HhhcCCeEEEEec-CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCc
Confidence 7899999999988 57889999999 887665 4455 88999988753
No 286
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=97.72 E-value=4.9e-06 Score=63.11 Aligned_cols=53 Identities=6% Similarity=0.019 Sum_probs=45.2
Q ss_pred CccccCCcc-----------CCCCC--cceecCCCCC-CCCCCCccee-eecCCCc-hhh-hcccCcccc
Q 030227 112 VPVPVNGME-----------ISHHS--MRISEPPPPG-VTHESNGYET-HLNVTNY-DYS-RRVFGATLD 164 (181)
Q Consensus 112 ~~~~~~~~~-----------f~~~g--~i~~~~~~~~-~~~~~kG~gf-~f~~~~~-~~a-~~~~g~~~~ 164 (181)
..++|.+|+ |.+|| +|..+.|+.| .++++||||| .|.+.+. +.| ..|||..|.
T Consensus 69 ~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~ 138 (229)
T 3q2s_C 69 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELH 138 (229)
T ss_dssp CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBT
T ss_pred cEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeEC
Confidence 568889988 79999 9999999999 8999999999 8877654 444 779998887
No 287
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.72 E-value=3.1e-06 Score=55.22 Aligned_cols=53 Identities=13% Similarity=0.088 Sum_probs=42.1
Q ss_pred CccccCCcc-----------CCCCCcceecCCCCC-C---CCCCCccee-eecCCCchh-h-hcccCcccc
Q 030227 112 VPVPVNGME-----------ISHHSMRISEPPPPG-V---THESNGYET-HLNVTNYDY-S-RRVFGATLD 164 (181)
Q Consensus 112 ~~~~~~~~~-----------f~~~g~i~~~~~~~~-~---~~~~kG~gf-~f~~~~~~~-a-~~~~g~~~~ 164 (181)
..+++.+|| |+++|.|..+.++.+ . ++.++|||| .|.+.+.+. | ..|+|..|+
T Consensus 6 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 76 (98)
T 2cpf_A 6 SGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVD 76 (98)
T ss_dssp CCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEET
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeC
Confidence 367777777 799999999999987 4 558999999 887665444 4 778998888
No 288
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=97.72 E-value=5.3e-06 Score=53.00 Aligned_cols=45 Identities=2% Similarity=-0.102 Sum_probs=37.7
Q ss_pred CCCCCcceecCCCCC-CCCCCCccee-eecCCCchhh-hcccCccccc
Q 030227 121 ISHHSMRISEPPPPG-VTHESNGYET-HLNVTNYDYS-RRVFGATLDS 165 (181)
Q Consensus 121 f~~~g~i~~~~~~~~-~~~~~kG~gf-~f~~~~~~~a-~~~~g~~~~~ 165 (181)
|+++|.|..+.++.+ .++.++|||| .|.+.+.+.+ ..++|..++.
T Consensus 27 F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g 74 (89)
T 3ucg_A 27 FHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRG 74 (89)
T ss_dssp HGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETT
T ss_pred HHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEECC
Confidence 799999999999999 7999999999 8877654444 7888888873
No 289
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=97.72 E-value=2.8e-06 Score=55.11 Aligned_cols=54 Identities=7% Similarity=-0.061 Sum_probs=44.1
Q ss_pred CccccCCcc-----------CCCCCcceecCCCCC-CCCCCCccee-eecCCC-chhh-hcccCccccc
Q 030227 112 VPVPVNGME-----------ISHHSMRISEPPPPG-VTHESNGYET-HLNVTN-YDYS-RRVFGATLDS 165 (181)
Q Consensus 112 ~~~~~~~~~-----------f~~~g~i~~~~~~~~-~~~~~kG~gf-~f~~~~-~~~a-~~~~g~~~~~ 165 (181)
..+++.+|| |.++|.|..+.++.+ .++.++|||| .|.+.+ ++.| +.+||..|+.
T Consensus 16 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g 84 (95)
T 2ek1_A 16 TVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGS 84 (95)
T ss_dssp EEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECC
Confidence 577888888 899999998998887 8889999999 887765 4445 7789988863
No 290
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=97.72 E-value=1e-05 Score=54.14 Aligned_cols=53 Identities=11% Similarity=-0.001 Sum_probs=40.7
Q ss_pred CccccCCcc-----------CCCCCcceecCCCCC-CCCCCCccee-eecCCCch-hhhcccCcccc
Q 030227 112 VPVPVNGME-----------ISHHSMRISEPPPPG-VTHESNGYET-HLNVTNYD-YSRRVFGATLD 164 (181)
Q Consensus 112 ~~~~~~~~~-----------f~~~g~i~~~~~~~~-~~~~~kG~gf-~f~~~~~~-~a~~~~g~~~~ 164 (181)
..+++.+|| |+++|+|..+.++.+ .++.++|||| .|.+.+.+ .|.+.+|..|+
T Consensus 26 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~ 92 (109)
T 2rs2_A 26 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELD 92 (109)
T ss_dssp CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEET
T ss_pred CEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCC
Confidence 577888888 899999999999999 7899999999 88766543 34333345554
No 291
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=97.72 E-value=4.8e-06 Score=55.99 Aligned_cols=53 Identities=15% Similarity=0.052 Sum_probs=44.3
Q ss_pred CccccCCcc-----------CCCCCcceecCCCCC-CCCCCCccee-eecCCCchh-h-hcccCcccc
Q 030227 112 VPVPVNGME-----------ISHHSMRISEPPPPG-VTHESNGYET-HLNVTNYDY-S-RRVFGATLD 164 (181)
Q Consensus 112 ~~~~~~~~~-----------f~~~g~i~~~~~~~~-~~~~~kG~gf-~f~~~~~~~-a-~~~~g~~~~ 164 (181)
..+++.+|| |.++|.|..+.++.+ .++.++|||| .|.+.+.+. | +.++|..|+
T Consensus 16 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 83 (115)
T 2dgo_A 16 FHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLG 83 (115)
T ss_dssp EEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEET
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 578888888 899999999999999 7999999999 887765444 4 678888877
No 292
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.71 E-value=1.1e-05 Score=54.29 Aligned_cols=53 Identities=8% Similarity=0.029 Sum_probs=42.8
Q ss_pred CccccCCcc-----------CCCCCcceecCCCCC-CCCCCCccee-eecCCCch-hhhcccCcccc
Q 030227 112 VPVPVNGME-----------ISHHSMRISEPPPPG-VTHESNGYET-HLNVTNYD-YSRRVFGATLD 164 (181)
Q Consensus 112 ~~~~~~~~~-----------f~~~g~i~~~~~~~~-~~~~~kG~gf-~f~~~~~~-~a~~~~g~~~~ 164 (181)
..+++.+|| |.++|.|..+.++.+ .++.++|||| .|.+.+.+ .|.+.+|..|+
T Consensus 28 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~ 94 (116)
T 1x4b_A 28 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSID 94 (116)
T ss_dssp TEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEET
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEEC
Confidence 678888888 899999999999999 8899999999 88766544 44333777776
No 293
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=97.71 E-value=3.8e-05 Score=52.85 Aligned_cols=53 Identities=9% Similarity=0.019 Sum_probs=41.1
Q ss_pred CccccCCcc-----------CCCCCcce--ecCCCCCCCCCCCccee-eecCCCch-hhhcccCccccc
Q 030227 112 VPVPVNGME-----------ISHHSMRI--SEPPPPGVTHESNGYET-HLNVTNYD-YSRRVFGATLDS 165 (181)
Q Consensus 112 ~~~~~~~~~-----------f~~~g~i~--~~~~~~~~~~~~kG~gf-~f~~~~~~-~a~~~~g~~~~~ 165 (181)
..+++.+|| |+++ .|. .+.++.|..|+++|||| .|.+.+.+ .|-+.++..|+.
T Consensus 43 ~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~~~~~l~g 110 (126)
T 2hgm_A 43 GFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGH 110 (126)
T ss_dssp CEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTTTTCCBTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHHCCCEECC
Confidence 678899999 7888 777 89999995599999999 88766544 444557777763
No 294
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=97.70 E-value=8.7e-06 Score=56.56 Aligned_cols=53 Identities=15% Similarity=0.023 Sum_probs=44.5
Q ss_pred CccccCCcc-----------CCCCCcceecCCCCC-CCCCCCccee-eecCCCchh-h-hcccCcccc
Q 030227 112 VPVPVNGME-----------ISHHSMRISEPPPPG-VTHESNGYET-HLNVTNYDY-S-RRVFGATLD 164 (181)
Q Consensus 112 ~~~~~~~~~-----------f~~~g~i~~~~~~~~-~~~~~kG~gf-~f~~~~~~~-a-~~~~g~~~~ 164 (181)
..+++.+|| |+.+|+|..+.++.+ .++.++|||| .|.+.+.+. | ..+||..|.
T Consensus 43 ~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 110 (139)
T 1u6f_A 43 RNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNIL 110 (139)
T ss_dssp SEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 678889988 799999999999998 7899999999 887665444 4 778988887
No 295
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=97.70 E-value=4.7e-06 Score=56.83 Aligned_cols=53 Identities=11% Similarity=-0.000 Sum_probs=44.1
Q ss_pred CccccCCcc-----------CCCCCcceecCCCCC-CCCCCCccee-eecCCCchhh-hcccCcccc
Q 030227 112 VPVPVNGME-----------ISHHSMRISEPPPPG-VTHESNGYET-HLNVTNYDYS-RRVFGATLD 164 (181)
Q Consensus 112 ~~~~~~~~~-----------f~~~g~i~~~~~~~~-~~~~~kG~gf-~f~~~~~~~a-~~~~g~~~~ 164 (181)
..+++.+|| |+++|+|..+.++.+ .++.++|||| .|.+.+.+.+ .+++|..|+
T Consensus 37 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~ 103 (124)
T 2jwn_A 37 RSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFR 103 (124)
T ss_dssp TEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEET
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeEC
Confidence 567888888 899999999999999 8999999999 8877654444 678888877
No 296
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.69 E-value=9.3e-06 Score=54.41 Aligned_cols=53 Identities=15% Similarity=0.051 Sum_probs=44.1
Q ss_pred CccccCCcc-----------CCCCCcceecCCCCCCCCCCCccee-eecCCC-chhh-hcccCcccc
Q 030227 112 VPVPVNGME-----------ISHHSMRISEPPPPGVTHESNGYET-HLNVTN-YDYS-RRVFGATLD 164 (181)
Q Consensus 112 ~~~~~~~~~-----------f~~~g~i~~~~~~~~~~~~~kG~gf-~f~~~~-~~~a-~~~~g~~~~ 164 (181)
..+++.+|| |.++|+|..+.++.+.++.++|||| .|.+.+ ++.| ..++|..|+
T Consensus 16 ~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 82 (114)
T 2do0_A 16 STVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLF 82 (114)
T ss_dssp SCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 578888888 7999999999999997789999999 887754 4455 778888887
No 297
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.69 E-value=1.5e-05 Score=53.23 Aligned_cols=53 Identities=8% Similarity=0.126 Sum_probs=42.5
Q ss_pred CccccCCcc-----------CCCCCcceecCCCCCCCCCCCccee-eecCCCch-hh-hcccCccccc
Q 030227 112 VPVPVNGME-----------ISHHSMRISEPPPPGVTHESNGYET-HLNVTNYD-YS-RRVFGATLDS 165 (181)
Q Consensus 112 ~~~~~~~~~-----------f~~~g~i~~~~~~~~~~~~~kG~gf-~f~~~~~~-~a-~~~~g~~~~~ 165 (181)
..+++.+|| |+++|+|..+.++.+.. .++|||| .|.+.+.+ .| ..++|..++.
T Consensus 30 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g 96 (109)
T 2err_A 30 KRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER-GSKGFGFVTFENSADADRAREKLHGTVVEG 96 (109)
T ss_dssp CEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTT-BCTTEEEEECCCSHHHHHHHHHHTTCEETT
T ss_pred CEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCC-CCceEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 678888888 89999999999998843 4999999 88776544 44 7789988873
No 298
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.68 E-value=0.00028 Score=46.59 Aligned_cols=74 Identities=4% Similarity=0.002 Sum_probs=61.6
Q ss_pred CCeEEEcCCCCcCcH-----HHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEEE
Q 030227 8 GCNVYIGNLDEKVSE-----RVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLR 82 (181)
Q Consensus 8 ~~~l~V~nLp~~~te-----~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i~ 82 (181)
-++|+|.||+.++-. +.++++|..++++....+.+. . .=.-|.|.+.++|.+|-..|++. .+.|++++
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS-----F-RRirv~F~~~~~A~~AR~~Lh~~-~f~g~~~r 77 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS-----F-KRVRINFSNPLSAADARLRLHKT-EFLGKEMK 77 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT-----T-TEEEEECSSTTHHHHHHHTSTTS-EETTEECE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc-----c-eEEEEEeCChHHHHHHHHHhccc-eecCceeE
Confidence 568999999976632 567899999999988777654 1 13579999999999999999998 99999999
Q ss_pred EEecCC
Q 030227 83 FALSGQ 88 (181)
Q Consensus 83 v~~a~~ 88 (181)
|-++.+
T Consensus 78 ~YFgq~ 83 (104)
T 1wey_A 78 LYFAQT 83 (104)
T ss_dssp EECCCC
T ss_pred EEecCC
Confidence 999874
No 299
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=97.67 E-value=3.9e-06 Score=54.39 Aligned_cols=54 Identities=9% Similarity=-0.051 Sum_probs=44.2
Q ss_pred CccccCCcc-----------CCCCCcceecCCCCCCCCCCCccee-eecCCCchhh--hcccCccccc
Q 030227 112 VPVPVNGME-----------ISHHSMRISEPPPPGVTHESNGYET-HLNVTNYDYS--RRVFGATLDS 165 (181)
Q Consensus 112 ~~~~~~~~~-----------f~~~g~i~~~~~~~~~~~~~kG~gf-~f~~~~~~~a--~~~~g~~~~~ 165 (181)
..+.+.+|| |+++|+|..+.++.+..+.++|||| .|.+.+.+.+ ..++|..++.
T Consensus 17 ~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 84 (95)
T 2ywk_A 17 RTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYG 84 (95)
T ss_dssp GEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETT
T ss_pred CEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 577888888 7999999999999996689999999 8876654444 7789988873
No 300
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.66 E-value=3.5e-05 Score=50.42 Aligned_cols=50 Identities=8% Similarity=0.149 Sum_probs=39.1
Q ss_pred CccccCCcc-----------CCCCCcceecCCCCCCCCCCCccee-eecCCCchh-h-hcccCcccc
Q 030227 112 VPVPVNGME-----------ISHHSMRISEPPPPGVTHESNGYET-HLNVTNYDY-S-RRVFGATLD 164 (181)
Q Consensus 112 ~~~~~~~~~-----------f~~~g~i~~~~~~~~~~~~~kG~gf-~f~~~~~~~-a-~~~~g~~~~ 164 (181)
..+++.+|| |.++|+| .++.+.++.++|||| .|.+.+.+. | ..++|..|+
T Consensus 16 ~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 79 (101)
T 2fc9_A 16 KTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIE 79 (101)
T ss_dssp SEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEET
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 578888888 7888877 566677889999999 887765444 4 678988887
No 301
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.65 E-value=1.8e-05 Score=52.03 Aligned_cols=53 Identities=15% Similarity=0.114 Sum_probs=41.1
Q ss_pred CccccCCcc-----------CCCCCcceecCCCCC-CCCCCCccee-eecCCCchhh--hc---ccCcccc
Q 030227 112 VPVPVNGME-----------ISHHSMRISEPPPPG-VTHESNGYET-HLNVTNYDYS--RR---VFGATLD 164 (181)
Q Consensus 112 ~~~~~~~~~-----------f~~~g~i~~~~~~~~-~~~~~kG~gf-~f~~~~~~~a--~~---~~g~~~~ 164 (181)
..+++.+|| |.++|.|..+.++.+ .++.++|||| .|.+.+.+.+ .. ++|..|.
T Consensus 16 ~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~g~~l~ 86 (103)
T 2cqg_A 16 SDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCD 86 (103)
T ss_dssp CCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHSCEEETTEEEE
T ss_pred CEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHcCCeeCCeEEE
Confidence 577888888 799999999999999 7899999999 8876654443 32 5555554
No 302
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=97.65 E-value=2.2e-06 Score=57.92 Aligned_cols=53 Identities=15% Similarity=0.211 Sum_probs=41.8
Q ss_pred CccccCCcc-----------CCCCCcceecCCCCCCCCCCCccee-eecCCCc-hhh-hcccCccccc
Q 030227 112 VPVPVNGME-----------ISHHSMRISEPPPPGVTHESNGYET-HLNVTNY-DYS-RRVFGATLDS 165 (181)
Q Consensus 112 ~~~~~~~~~-----------f~~~g~i~~~~~~~~~~~~~kG~gf-~f~~~~~-~~a-~~~~g~~~~~ 165 (181)
..+++.+|| |+++|.|..++++.+. +.++|||| .|.+.+. +.| ++++|..|+.
T Consensus 6 ~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~-~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g 72 (115)
T 4f25_A 6 GNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NGSKGYGFVHFETQEAAERAIEKMNGMLLND 72 (115)
T ss_dssp CEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET-TEEEEEEEEEESCHHHHHHHHHHHTTCEETT
T ss_pred CEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC-CCCCceEEEEECCHHHHHHHHHHcCCCEECC
Confidence 467888888 8999999999999884 34899999 7766554 455 7889988873
No 303
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=97.64 E-value=1.9e-05 Score=53.54 Aligned_cols=53 Identities=9% Similarity=0.003 Sum_probs=42.9
Q ss_pred CccccCCcc-----------CCCCCc---ceecCCCCCCCCCCCccee-eecCCCchh-hhcccCcccc
Q 030227 112 VPVPVNGME-----------ISHHSM---RISEPPPPGVTHESNGYET-HLNVTNYDY-SRRVFGATLD 164 (181)
Q Consensus 112 ~~~~~~~~~-----------f~~~g~---i~~~~~~~~~~~~~kG~gf-~f~~~~~~~-a~~~~g~~~~ 164 (181)
..+++.+|| |.++|. |..++++.+..++++|||| .|.+.+.+. |.+++|..|+
T Consensus 18 ~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~ 86 (118)
T 2db1_A 18 YVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALKKDRESMG 86 (118)
T ss_dssp CEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGGGTTEEET
T ss_pred cEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeEC
Confidence 578889998 789998 8899999995599999999 887765444 4558888887
No 304
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.63 E-value=6.7e-05 Score=48.98 Aligned_cols=53 Identities=17% Similarity=0.218 Sum_probs=46.7
Q ss_pred eEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhC
Q 030227 10 NVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFS 71 (181)
Q Consensus 10 ~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~ 71 (181)
.+++ ++|.+|...+|.++|+.|| -..|.|+-| ..|||.|.+++.|..|+..+.
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidD-------TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDD-------TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEET-------TEEEEEEEEECHHHHHHHHHT
T ss_pred EEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcC-------CeEEEEecCHHHHHHHHHhcc
Confidence 4555 9999999999999999999 677888887 379999999999999999764
No 305
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=97.62 E-value=6.7e-06 Score=54.07 Aligned_cols=53 Identities=17% Similarity=0.093 Sum_probs=41.6
Q ss_pred CccccCCcc-----------CCCCCcceecCCCCCCCCCCCccee-eecCCCc-hhh-h---cccCcccc
Q 030227 112 VPVPVNGME-----------ISHHSMRISEPPPPGVTHESNGYET-HLNVTNY-DYS-R---RVFGATLD 164 (181)
Q Consensus 112 ~~~~~~~~~-----------f~~~g~i~~~~~~~~~~~~~kG~gf-~f~~~~~-~~a-~---~~~g~~~~ 164 (181)
..+++.+|| |+++|.|..+.++.+.++.++|||| .|.+.+. +.| . .++|..|.
T Consensus 10 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~g~~l~ 79 (102)
T 2xs2_A 10 NTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVESQINFHGKKLK 79 (102)
T ss_dssp EEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTTCCCEETTEECE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHhCCCeECCEEEE
Confidence 456777777 7999999999999998889999999 7766554 444 5 57777766
No 306
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=96.78 E-value=7.9e-06 Score=55.08 Aligned_cols=44 Identities=9% Similarity=-0.024 Sum_probs=36.6
Q ss_pred CCCCCccee--------cCCCCC-CCCCCCccee-eecCCC-chhh-hcccCcccc
Q 030227 121 ISHHSMRIS--------EPPPPG-VTHESNGYET-HLNVTN-YDYS-RRVFGATLD 164 (181)
Q Consensus 121 f~~~g~i~~--------~~~~~~-~~~~~kG~gf-~f~~~~-~~~a-~~~~g~~~~ 164 (181)
|+++|.|.. +.++.+ .++.++|||| .|.+.+ ++.| ..+||..++
T Consensus 28 F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 28 FKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 899999988 899999 8899999999 666554 5555 778998887
No 307
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=97.62 E-value=5e-06 Score=52.99 Aligned_cols=53 Identities=15% Similarity=0.192 Sum_probs=41.9
Q ss_pred ccccCCcc-----------CCCCCcceecCCCCC-CCCC-CCccee-eecCCCchh-h-hcccCccccc
Q 030227 113 PVPVNGME-----------ISHHSMRISEPPPPG-VTHE-SNGYET-HLNVTNYDY-S-RRVFGATLDS 165 (181)
Q Consensus 113 ~~~~~~~~-----------f~~~g~i~~~~~~~~-~~~~-~kG~gf-~f~~~~~~~-a-~~~~g~~~~~ 165 (181)
.+++.+|| |+++|.|..+.++.+ .++. ++|||| .|.+.+.+. | ..+||..++.
T Consensus 6 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 74 (88)
T 4a8x_A 6 KVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDG 74 (88)
T ss_dssp EEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred EEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECC
Confidence 56677777 799999999999998 5555 999999 887765444 4 7789998873
No 308
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=97.62 E-value=5.8e-06 Score=54.82 Aligned_cols=54 Identities=13% Similarity=0.120 Sum_probs=44.8
Q ss_pred CccccCCcc-----------CCCCCcceecCCCCCCCCCCCccee-eecCCCch-hh-hcccCccccc
Q 030227 112 VPVPVNGME-----------ISHHSMRISEPPPPGVTHESNGYET-HLNVTNYD-YS-RRVFGATLDS 165 (181)
Q Consensus 112 ~~~~~~~~~-----------f~~~g~i~~~~~~~~~~~~~kG~gf-~f~~~~~~-~a-~~~~g~~~~~ 165 (181)
..+++.+|| |.++|.|..+.++.+.++.++|||| .|.+.+.+ .| ..|+|..|..
T Consensus 30 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 97 (107)
T 3ulh_A 30 GKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDG 97 (107)
T ss_dssp EEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 578888888 7999999999999998999999999 88765444 44 7799988863
No 309
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.61 E-value=3.7e-06 Score=55.43 Aligned_cols=54 Identities=17% Similarity=0.083 Sum_probs=43.6
Q ss_pred CccccCCcc-----------CCCCCcceecCCCCC-CCCCCCccee-eecCCCc-hhh-hcccCccccc
Q 030227 112 VPVPVNGME-----------ISHHSMRISEPPPPG-VTHESNGYET-HLNVTNY-DYS-RRVFGATLDS 165 (181)
Q Consensus 112 ~~~~~~~~~-----------f~~~g~i~~~~~~~~-~~~~~kG~gf-~f~~~~~-~~a-~~~~g~~~~~ 165 (181)
..+++.+|| |+++|.|..+.++.+ .++.++|||| .|.+.+. +.| ..++|..++.
T Consensus 9 ~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 77 (104)
T 1p1t_A 9 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSG 77 (104)
T ss_dssp SCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSS
T ss_pred cEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCC
Confidence 466777777 799999999999998 7899999999 8866654 444 6799988873
No 310
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.59 E-value=1.9e-05 Score=52.98 Aligned_cols=53 Identities=11% Similarity=0.063 Sum_probs=42.5
Q ss_pred CccccCCcc-----------CCCCCcceecCCCCC-CCCCCCccee-eecCCCch-hh-hcccCcccc
Q 030227 112 VPVPVNGME-----------ISHHSMRISEPPPPG-VTHESNGYET-HLNVTNYD-YS-RRVFGATLD 164 (181)
Q Consensus 112 ~~~~~~~~~-----------f~~~g~i~~~~~~~~-~~~~~kG~gf-~f~~~~~~-~a-~~~~g~~~~ 164 (181)
..+++.+|| |.++|.|..+.+.++ .++.++|||| .|.+.+.+ .| ..++|..|.
T Consensus 26 ~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~ 93 (115)
T 2cpx_A 26 KVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLY 93 (115)
T ss_dssp SEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 578888888 789999977777776 6899999999 88776544 44 778998887
No 311
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.58 E-value=2.3e-05 Score=53.42 Aligned_cols=55 Identities=5% Similarity=-0.108 Sum_probs=43.5
Q ss_pred CccccCCcc-----------CCCCCcceecCCCCC-CCCCCCccee-eecCCCch-hhhcccCcccccC
Q 030227 112 VPVPVNGME-----------ISHHSMRISEPPPPG-VTHESNGYET-HLNVTNYD-YSRRVFGATLDSI 166 (181)
Q Consensus 112 ~~~~~~~~~-----------f~~~g~i~~~~~~~~-~~~~~kG~gf-~f~~~~~~-~a~~~~g~~~~~~ 166 (181)
..+++.+|| |.++|.|..+.++.+ .++.++|||| .|.+.+.+ .|.++||..|+..
T Consensus 26 ~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr 94 (124)
T 1wel_A 26 FCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNR 94 (124)
T ss_dssp CEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTS
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCc
Confidence 688899998 899999988666665 8999999999 88777544 4444999888743
No 312
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=97.57 E-value=2.6e-05 Score=51.67 Aligned_cols=45 Identities=16% Similarity=0.113 Sum_probs=37.0
Q ss_pred CCCCCcceecCCCCCCCCCCCccee-eecCCC-chhh-hcccCcccccC
Q 030227 121 ISHHSMRISEPPPPGVTHESNGYET-HLNVTN-YDYS-RRVFGATLDSI 166 (181)
Q Consensus 121 f~~~g~i~~~~~~~~~~~~~kG~gf-~f~~~~-~~~a-~~~~g~~~~~~ 166 (181)
|+++|.|..+.++ ..+|.++|||| .|.+.+ ++.| ..+||..|+..
T Consensus 42 F~~~G~v~~v~i~-~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~ 89 (105)
T 2nlw_A 42 FSKFGKITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ 89 (105)
T ss_dssp HGGGSCEEEEECC-CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTT
T ss_pred HhcCCCEEEEEee-CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 6889999999998 67889999999 887766 4555 88999988753
No 313
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=97.56 E-value=3e-05 Score=49.89 Aligned_cols=47 Identities=11% Similarity=0.047 Sum_probs=37.3
Q ss_pred CccccCCcc-----------CCCCCcceecCCCCCCCCCCCccee-eecCCCchhhhcccCcccc
Q 030227 112 VPVPVNGME-----------ISHHSMRISEPPPPGVTHESNGYET-HLNVTNYDYSRRVFGATLD 164 (181)
Q Consensus 112 ~~~~~~~~~-----------f~~~g~i~~~~~~~~~~~~~kG~gf-~f~~~~~~~a~~~~g~~~~ 164 (181)
..+.+.+|| |+++|+|..++++.+ ++|||| .|.+.+ .|.+++|..+.
T Consensus 12 ~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~----srGfaFV~F~~~~--~A~~~~~~~~~ 70 (89)
T 3d2w_A 12 SKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP----FRAFAFVTFADDK--VAQSLCGEDLI 70 (89)
T ss_dssp CEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS----CCSEEEEEESCHH--HHHHHTTCEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC----CCCEEEEEECCHH--HHHHHcCCCcc
Confidence 577888888 899999999999985 899999 997664 44456766543
No 314
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=97.56 E-value=8.1e-06 Score=54.30 Aligned_cols=44 Identities=2% Similarity=-0.140 Sum_probs=37.0
Q ss_pred CCCCcceecCCCCCCCCCCCccee-eecCCC-chhh-hcccCccccc
Q 030227 122 SHHSMRISEPPPPGVTHESNGYET-HLNVTN-YDYS-RRVFGATLDS 165 (181)
Q Consensus 122 ~~~g~i~~~~~~~~~~~~~kG~gf-~f~~~~-~~~a-~~~~g~~~~~ 165 (181)
+++|+|..+.++.+.++.++|||| .|.+.+ ++.| ..+||..++.
T Consensus 49 ~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~G 95 (104)
T 1jmt_A 49 EKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNG 95 (104)
T ss_dssp HHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETT
T ss_pred ccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 999999999999987788999999 887665 4455 8899998874
No 315
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.53 E-value=4.1e-05 Score=51.41 Aligned_cols=52 Identities=13% Similarity=0.042 Sum_probs=39.6
Q ss_pred CccccCCcc-----------CCCCCcceecCCCCC-CC---CCCCccee-eecCCCch-hh-hcc---cCcccc
Q 030227 112 VPVPVNGME-----------ISHHSMRISEPPPPG-VT---HESNGYET-HLNVTNYD-YS-RRV---FGATLD 164 (181)
Q Consensus 112 ~~~~~~~~~-----------f~~~g~i~~~~~~~~-~~---~~~kG~gf-~f~~~~~~-~a-~~~---~g~~~~ 164 (181)
..+++.+|| |+++|+|. +.++.+ .+ |.++|||| .|.+.+.+ .| ..+ +|..+.
T Consensus 9 ~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~~~G~~~~ 81 (114)
T 2dnl_A 9 RKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLEEDGKLYL 81 (114)
T ss_dssp CCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEEETTEEEE
T ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhhcCCcEEE
Confidence 467778887 89999999 888877 55 79999999 88776544 34 444 888664
No 316
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=97.52 E-value=1.4e-05 Score=55.76 Aligned_cols=54 Identities=9% Similarity=0.058 Sum_probs=43.6
Q ss_pred CccccCCcc-----------CCCCCc---ceecCCCCCCCCCCCccee-eecCCC-chhhhcccCccccc
Q 030227 112 VPVPVNGME-----------ISHHSM---RISEPPPPGVTHESNGYET-HLNVTN-YDYSRRVFGATLDS 165 (181)
Q Consensus 112 ~~~~~~~~~-----------f~~~g~---i~~~~~~~~~~~~~kG~gf-~f~~~~-~~~a~~~~g~~~~~ 165 (181)
..+++.+|| |+++|. |..+.++.|..++++|||| .|.+.+ ++.|.++||..|+.
T Consensus 45 ~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~~~g~~l~g 114 (136)
T 2hgl_A 45 FVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALKKDRESMGH 114 (136)
T ss_dssp CEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHTTTEEESSS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCEECC
Confidence 678899998 899999 7899999995599999999 887765 44444489988874
No 317
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.51 E-value=1.7e-05 Score=50.94 Aligned_cols=53 Identities=8% Similarity=0.069 Sum_probs=42.6
Q ss_pred CccccCCcc-----------CCCCCcceecCCCCCCCCCCCccee-eecCCC-chhhhcccCccccc
Q 030227 112 VPVPVNGME-----------ISHHSMRISEPPPPGVTHESNGYET-HLNVTN-YDYSRRVFGATLDS 165 (181)
Q Consensus 112 ~~~~~~~~~-----------f~~~g~i~~~~~~~~~~~~~kG~gf-~f~~~~-~~~a~~~~g~~~~~ 165 (181)
..+.+.+|| |.++ .|..+.++.+.++.++|||| .|.+.+ ++.|.+++|..|+.
T Consensus 11 ~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~~g~~~~g 76 (91)
T 2dgw_A 11 HTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCNREYMGG 76 (91)
T ss_dssp CEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHHSCSEEETT
T ss_pred cEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHHhCCceeCC
Confidence 577888888 7888 89999999998899999999 887665 44443399998874
No 318
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.48 E-value=8.4e-05 Score=47.31 Aligned_cols=46 Identities=13% Similarity=0.074 Sum_probs=34.4
Q ss_pred CccccCCcc-----------CCCCCcceecCCCCCCCCCCCccee-eecCCCchhhhcccCccc
Q 030227 112 VPVPVNGME-----------ISHHSMRISEPPPPGVTHESNGYET-HLNVTNYDYSRRVFGATL 163 (181)
Q Consensus 112 ~~~~~~~~~-----------f~~~g~i~~~~~~~~~~~~~kG~gf-~f~~~~~~~a~~~~g~~~ 163 (181)
..+++.+|| |+++|.|..+.++.+ ++|||| .|.+.+. |.++++..+
T Consensus 6 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~--a~~~~~~~~ 63 (88)
T 1wf0_A 6 SGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP----FRAFAFVTFADDQI--AQSLCGEDL 63 (88)
T ss_dssp CEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS----CCSCCEEECSCHHH--HHHTTTCEE
T ss_pred cEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC----CCCEEEEEECCHHH--HHHHhcCCc
Confidence 356777777 899999999999876 899999 9976644 444555444
No 319
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.47 E-value=0.00011 Score=48.80 Aligned_cols=51 Identities=6% Similarity=-0.084 Sum_probs=40.6
Q ss_pred CccccCCcc-----------CCCCCcceecCCCCCCCCCCCccee-eecCCCch-hh-hcccCcccc
Q 030227 112 VPVPVNGME-----------ISHHSMRISEPPPPGVTHESNGYET-HLNVTNYD-YS-RRVFGATLD 164 (181)
Q Consensus 112 ~~~~~~~~~-----------f~~~g~i~~~~~~~~~~~~~kG~gf-~f~~~~~~-~a-~~~~g~~~~ 164 (181)
..+++.+|| |.++|.|..+.++.+ +.++|||| .|.+.+.+ .| +.++|..|+
T Consensus 23 ~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 87 (109)
T 1x4a_A 23 CRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR--RGGPPFAFVEFEDPRDAEDAVYGRDGYDYD 87 (109)
T ss_dssp SEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS--SSSSCCEEEEESCHHHHHHHHHHHTTCEET
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC--CCCCcEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 678888888 899999999888765 44899999 88766544 44 788988887
No 320
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.47 E-value=3.9e-05 Score=50.38 Aligned_cols=52 Identities=12% Similarity=-0.034 Sum_probs=41.1
Q ss_pred CccccCCcc-----------CCCCCcceecCCCCCCCCCCCccee-eecCCCc-hhh-hcccCcccc
Q 030227 112 VPVPVNGME-----------ISHHSMRISEPPPPGVTHESNGYET-HLNVTNY-DYS-RRVFGATLD 164 (181)
Q Consensus 112 ~~~~~~~~~-----------f~~~g~i~~~~~~~~~~~~~kG~gf-~f~~~~~-~~a-~~~~g~~~~ 164 (181)
..+++.+|| |.++|.|..+.++.+... ++|||| .|.+.+. +.| ..++|..|.
T Consensus 16 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~ 81 (103)
T 2cqi_A 16 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS-NDPYCFVEFYEHRDAAAALAAMNGRKIL 81 (103)
T ss_dssp CEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS-SCCEEEEEESSHHHHHHHHHHHTTEEET
T ss_pred CEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC-CCCEEEEEECCHHHHHHHHHHhCCCCcC
Confidence 678888888 799999999999998333 699999 8876554 444 678888887
No 321
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.45 E-value=2.1e-05 Score=51.18 Aligned_cols=42 Identities=7% Similarity=-0.041 Sum_probs=33.6
Q ss_pred CCCCCcceecCCCCCCCCCCCccee-eecCCC-chhh-hcccCcccc
Q 030227 121 ISHHSMRISEPPPPGVTHESNGYET-HLNVTN-YDYS-RRVFGATLD 164 (181)
Q Consensus 121 f~~~g~i~~~~~~~~~~~~~kG~gf-~f~~~~-~~~a-~~~~g~~~~ 164 (181)
|+++|+|..+.++.+..+ +|||| .|.+.+ ++.| ..+||..++
T Consensus 34 F~~~G~v~~v~i~~~~~~--rg~afV~f~~~~~A~~Ai~~l~g~~~~ 78 (96)
T 2dgx_A 34 FARHGKVKSVELSPHTDY--QLKAVVQMENLQDAIGAVNSLHRYKIG 78 (96)
T ss_dssp HHHHSCEEEEEECSCCST--TCCEEEEESSHHHHHHHHHHHTTEEET
T ss_pred ccccCcEEEEEEEeCCCC--CeEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 678999999999999444 99999 887655 4444 779999887
No 322
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=97.44 E-value=1.7e-05 Score=56.24 Aligned_cols=53 Identities=13% Similarity=0.076 Sum_probs=44.2
Q ss_pred CccccCCcc-----------CCCCCcceecCCCCC-CCCCCCccee-eecCCCch-hh-hcccCcccc
Q 030227 112 VPVPVNGME-----------ISHHSMRISEPPPPG-VTHESNGYET-HLNVTNYD-YS-RRVFGATLD 164 (181)
Q Consensus 112 ~~~~~~~~~-----------f~~~g~i~~~~~~~~-~~~~~kG~gf-~f~~~~~~-~a-~~~~g~~~~ 164 (181)
..++|.+|| |+++|+|..+.++.+ .++.++|||| .|.+.+.+ .| ..|+|..|+
T Consensus 40 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 107 (156)
T 1h2v_Z 40 CTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLD 107 (156)
T ss_dssp CEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEET
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 577888888 899999999999999 7899999999 88766544 44 778888887
No 323
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=97.42 E-value=3.8e-05 Score=55.89 Aligned_cols=54 Identities=13% Similarity=0.121 Sum_probs=45.0
Q ss_pred CccccCCcc-----------CCCCCcceecCCCCCCCCCCCccee-eecCCC-chhh-hcccCccccc
Q 030227 112 VPVPVNGME-----------ISHHSMRISEPPPPGVTHESNGYET-HLNVTN-YDYS-RRVFGATLDS 165 (181)
Q Consensus 112 ~~~~~~~~~-----------f~~~g~i~~~~~~~~~~~~~kG~gf-~f~~~~-~~~a-~~~~g~~~~~ 165 (181)
..++|.+|| |.++|+|..+.++.+.++.++|||| .|.+.+ ++.| ..++|..|+.
T Consensus 89 ~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~G 156 (177)
T 2f3j_A 89 AKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDG 156 (177)
T ss_dssp EEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECC
Confidence 677888888 7999999999999998999999999 877655 4444 7799988874
No 324
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.42 E-value=7.5e-05 Score=49.88 Aligned_cols=44 Identities=5% Similarity=-0.139 Sum_probs=34.7
Q ss_pred CCCCCcceecCCCCC-CC---CCCCccee-eecCCC-chhh-hcccCcccc
Q 030227 121 ISHHSMRISEPPPPG-VT---HESNGYET-HLNVTN-YDYS-RRVFGATLD 164 (181)
Q Consensus 121 f~~~g~i~~~~~~~~-~~---~~~kG~gf-~f~~~~-~~~a-~~~~g~~~~ 164 (181)
|+++|+|..+.++.+ .+ +.++|||| .|.+.+ ++.| ..|||..|+
T Consensus 39 F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~ 89 (111)
T 2cpi_A 39 FGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVD 89 (111)
T ss_dssp TTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEET
T ss_pred hhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEEC
Confidence 789999999999887 43 45779999 887655 4455 778998887
No 325
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=97.41 E-value=2.1e-05 Score=52.42 Aligned_cols=45 Identities=2% Similarity=-0.279 Sum_probs=37.2
Q ss_pred CCCCCcceecCCCCC-C-CCCCCccee-eecCCC-chhh-hcccCccccc
Q 030227 121 ISHHSMRISEPPPPG-V-THESNGYET-HLNVTN-YDYS-RRVFGATLDS 165 (181)
Q Consensus 121 f~~~g~i~~~~~~~~-~-~~~~kG~gf-~f~~~~-~~~a-~~~~g~~~~~ 165 (181)
|++||+|..+.++.+ . ++.++|||| .|.+.+ ++.| ..|||..++.
T Consensus 34 f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~G 83 (105)
T 2pe8_A 34 CEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGG 83 (105)
T ss_dssp GGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred HHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 899999999999988 4 468999999 887765 4555 8999999873
No 326
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.40 E-value=3.6e-05 Score=51.03 Aligned_cols=53 Identities=9% Similarity=0.125 Sum_probs=40.7
Q ss_pred CccccCCcc-----------CCCCCc-ceecCCC-CC-CCCCCCccee-eecCCC-chhh-hccc--Ccccc
Q 030227 112 VPVPVNGME-----------ISHHSM-RISEPPP-PG-VTHESNGYET-HLNVTN-YDYS-RRVF--GATLD 164 (181)
Q Consensus 112 ~~~~~~~~~-----------f~~~g~-i~~~~~~-~~-~~~~~kG~gf-~f~~~~-~~~a-~~~~--g~~~~ 164 (181)
..+++.+|| |.++|. |..+.++ .+ .++.++|||| .|.+.+ ++.| +.++ +..++
T Consensus 9 ~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~ 80 (109)
T 2dis_A 9 CRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLW 80 (109)
T ss_dssp EEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBT
T ss_pred CEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceec
Confidence 467777777 789998 9999998 66 7889999999 887665 4444 7785 46666
No 327
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=97.39 E-value=4.4e-05 Score=50.76 Aligned_cols=45 Identities=11% Similarity=-0.006 Sum_probs=36.7
Q ss_pred CCCCCcceecCCCCC-CC--CCCCccee-eecCCC-chhh-hcccCccccc
Q 030227 121 ISHHSMRISEPPPPG-VT--HESNGYET-HLNVTN-YDYS-RRVFGATLDS 165 (181)
Q Consensus 121 f~~~g~i~~~~~~~~-~~--~~~kG~gf-~f~~~~-~~~a-~~~~g~~~~~ 165 (181)
|++||+|..+.++.+ .+ +.++|||| .|.+.+ +..| +.|||..++.
T Consensus 36 f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~f~G 86 (105)
T 3v4m_A 36 CSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFAN 86 (105)
T ss_dssp HHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred HHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 899999999999998 44 46899999 887765 4445 8999998874
No 328
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=97.37 E-value=1e-05 Score=52.10 Aligned_cols=40 Identities=13% Similarity=0.101 Sum_probs=33.6
Q ss_pred CCCCCcceecCCCCCCCCCCCccee-eecCC-Cchhh-hcccCccccc
Q 030227 121 ISHHSMRISEPPPPGVTHESNGYET-HLNVT-NYDYS-RRVFGATLDS 165 (181)
Q Consensus 121 f~~~g~i~~~~~~~~~~~~~kG~gf-~f~~~-~~~~a-~~~~g~~~~~ 165 (181)
|.++|+|..+.+.. +||||| +|.+. ++++| +.|||..|..
T Consensus 28 F~q~G~V~~~~l~~-----~kGfaFVey~~~~eA~~Ai~~Ln~~~l~g 70 (89)
T 2wbr_A 28 CMQHGPLVSFHPYL-----NQGIALCKYTTREEANKAQMALNNCVLAN 70 (89)
T ss_dssp HHHHSCEEEEEEET-----TTTEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred HHhhCCEEEEEEcC-----CCcEEEEEECCHHHHHHHHHHhcCCEECC
Confidence 89999999988754 799999 88777 77777 9999888874
No 329
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=97.32 E-value=4.1e-05 Score=52.76 Aligned_cols=43 Identities=7% Similarity=0.001 Sum_probs=33.7
Q ss_pred CCCCCcceecCCCCCCCCCCCccee-eecCCC-chhh-hcccCccccc
Q 030227 121 ISHHSMRISEPPPPGVTHESNGYET-HLNVTN-YDYS-RRVFGATLDS 165 (181)
Q Consensus 121 f~~~g~i~~~~~~~~~~~~~kG~gf-~f~~~~-~~~a-~~~~g~~~~~ 165 (181)
|++||+|..+.++. ++.++|||| .|.+.+ ++.| ..+||..|..
T Consensus 54 F~~~G~I~~v~i~~--~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~g 99 (127)
T 2a3j_A 54 ASSQGDILDIVVDL--SDDNSGKAYIVFATQESAQAFVEAFQGYPFQG 99 (127)
T ss_dssp HHHHSCEEEEEECC--CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTT
T ss_pred hccCCCeEEEEecc--CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCC
Confidence 68999998887764 577899999 887654 5555 8899988873
No 330
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.31 E-value=0.00017 Score=46.97 Aligned_cols=49 Identities=8% Similarity=-0.021 Sum_probs=39.0
Q ss_pred CccccCCcc-----------CCCCCcceecCCCCCCCCCCCccee-eecCCCchhh--hcccCccccc
Q 030227 112 VPVPVNGME-----------ISHHSMRISEPPPPGVTHESNGYET-HLNVTNYDYS--RRVFGATLDS 165 (181)
Q Consensus 112 ~~~~~~~~~-----------f~~~g~i~~~~~~~~~~~~~kG~gf-~f~~~~~~~a--~~~~g~~~~~ 165 (181)
..+++.+|| |.++|+|..+.++.+ +|||| .|.+.+.+.+ +.++|..|+.
T Consensus 16 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~-----kg~afV~f~~~~~a~~a~~~l~g~~~~g 78 (99)
T 2cpj_A 16 SRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD-----KGFGFIRLETRTLAEIAKVELDNMPLRG 78 (99)
T ss_dssp TEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT-----TTEEEEECSSSHHHHHHHHHHTTCCBTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC-----CCEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 577888888 899999998888754 89999 8877654444 7889988873
No 331
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.28 E-value=2.2e-05 Score=53.87 Aligned_cols=54 Identities=13% Similarity=0.015 Sum_probs=41.3
Q ss_pred CccccCCcc-----------CCCCCcc----eecCCCCCCCCCCCccee-eecCCC-chhhhcccCccccc
Q 030227 112 VPVPVNGME-----------ISHHSMR----ISEPPPPGVTHESNGYET-HLNVTN-YDYSRRVFGATLDS 165 (181)
Q Consensus 112 ~~~~~~~~~-----------f~~~g~i----~~~~~~~~~~~~~kG~gf-~f~~~~-~~~a~~~~g~~~~~ 165 (181)
..+++.+|| |+++|.| ..+.++.+.+++++|||| .|.+.+ ++.|.+.||..|+.
T Consensus 24 ~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~g 94 (123)
T 2dha_A 24 VIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGK 94 (123)
T ss_dssp CEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTTTTEESSS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeeCC
Confidence 477888888 6888875 688899888899999999 887664 44444448887774
No 332
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.27 E-value=0.0021 Score=43.44 Aligned_cols=71 Identities=11% Similarity=0.112 Sum_probs=56.7
Q ss_pred CCCeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCC-eEEEEEe
Q 030227 7 SGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYN-RTLRFAL 85 (181)
Q Consensus 7 ~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g-~~i~v~~ 85 (181)
..+-|-|-+.|+.. ...+...|++||.|.+.... ....+-.|.|.++.+|++||. .||. .+++ ..|-|.+
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~------~~~NWihI~Y~s~~~A~rAL~-kNG~-ii~g~~mIGV~p 93 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS------NTGNWMHIRYQSKLQARKALS-KDGR-IFGESIMIGVKP 93 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC------SSSSEEEEEESSHHHHHHHHT-TTTC-EETTTEECEEEE
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC------CCCCeEEEEeCCHHHHHHHHH-hCCe-EecCCEEEEEEE
Confidence 45678888999875 56678899999999988762 234699999999999999999 6998 7775 5677766
Q ss_pred c
Q 030227 86 S 86 (181)
Q Consensus 86 a 86 (181)
.
T Consensus 94 ~ 94 (119)
T 1wwh_A 94 C 94 (119)
T ss_dssp C
T ss_pred C
Confidence 4
No 333
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=97.27 E-value=2e-05 Score=51.59 Aligned_cols=53 Identities=8% Similarity=0.041 Sum_probs=41.5
Q ss_pred CccccCCcc-----------CCCCCcceecCCCCC-CCCCCCccee-eecCCCc-hhhhcccCccccc
Q 030227 112 VPVPVNGME-----------ISHHSMRISEPPPPG-VTHESNGYET-HLNVTNY-DYSRRVFGATLDS 165 (181)
Q Consensus 112 ~~~~~~~~~-----------f~~~g~i~~~~~~~~-~~~~~kG~gf-~f~~~~~-~~a~~~~g~~~~~ 165 (181)
..+++.+|| |.++|.|.. .++.+ .++.++|||| .|.+.+. +.|.+++|..+..
T Consensus 18 ~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g 84 (101)
T 1fj7_A 18 FNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFG 84 (101)
T ss_dssp EEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGCCBTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHhcCCcEECC
Confidence 577888888 788898887 77777 8899999999 8876654 4443399998873
No 334
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.24 E-value=0.00013 Score=48.45 Aligned_cols=48 Identities=15% Similarity=0.149 Sum_probs=39.3
Q ss_pred CccccCCcc-----------CCCCCcceecCCCCCCCCCCCccee-eecCCC-chhh-hcccCccccc
Q 030227 112 VPVPVNGME-----------ISHHSMRISEPPPPGVTHESNGYET-HLNVTN-YDYS-RRVFGATLDS 165 (181)
Q Consensus 112 ~~~~~~~~~-----------f~~~g~i~~~~~~~~~~~~~kG~gf-~f~~~~-~~~a-~~~~g~~~~~ 165 (181)
..+++.+|| |.++|+|..+.++.+ |||| .|.+.+ ++.| ..|||..|..
T Consensus 16 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~~g 77 (108)
T 1x4c_A 16 NRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKFRS 77 (108)
T ss_dssp CEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT------TEEEEEESSHHHHHHHHHHSSSEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC------CEEEEEECCHHHHHHHHHHHCcCCccC
Confidence 688888988 799999999999877 9999 887754 5555 7799888865
No 335
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=97.22 E-value=8.5e-05 Score=49.73 Aligned_cols=52 Identities=6% Similarity=-0.071 Sum_probs=40.4
Q ss_pred CccccCCcc-----------CCCCCcceecCCCCCCCCCCCccee-eecCCCc-hhh-hcccCccccc
Q 030227 112 VPVPVNGME-----------ISHHSMRISEPPPPGVTHESNGYET-HLNVTNY-DYS-RRVFGATLDS 165 (181)
Q Consensus 112 ~~~~~~~~~-----------f~~~g~i~~~~~~~~~~~~~kG~gf-~f~~~~~-~~a-~~~~g~~~~~ 165 (181)
..+++.+|| |+++|.|..+.++.+ +.++|||| .|.+.+. +.| ..+||..++.
T Consensus 9 ~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 74 (115)
T 3lqv_A 9 RILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT--PETRGTAYVVYEDIFDAKNAVDHLSGFNVSN 74 (115)
T ss_dssp SEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS--TTTTTCEEEEESSHHHHHHHHHHHTTCBSSS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC--CCCCcEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 467788887 799999999999875 34599999 8876654 444 7799998873
No 336
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=97.17 E-value=5.1e-05 Score=51.04 Aligned_cols=51 Identities=6% Similarity=0.063 Sum_probs=39.3
Q ss_pred CccccCCcc-----------CCCCC-cceecCCCCCCCCCCCccee-eecCCC-chhh-hcccCccccc
Q 030227 112 VPVPVNGME-----------ISHHS-MRISEPPPPGVTHESNGYET-HLNVTN-YDYS-RRVFGATLDS 165 (181)
Q Consensus 112 ~~~~~~~~~-----------f~~~g-~i~~~~~~~~~~~~~kG~gf-~f~~~~-~~~a-~~~~g~~~~~ 165 (181)
..+++.+|| |.++| +|..+.++.+ .++|||| .|.+.+ ++.| +++||..|+.
T Consensus 29 ~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~---~~rGfaFV~F~~~e~A~~Ai~~lng~~l~G 94 (111)
T 2jvr_A 29 YRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR---DFDGTGALEFPSEEILVEALERLNNIEFRG 94 (111)
T ss_dssp EEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC---SSSCCEEEEESSHHHHHHHHHHTTTEEETT
T ss_pred CEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC---CCCCEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 577888888 78889 8888887643 4899999 776654 5556 7899998883
No 337
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.16 E-value=9.9e-05 Score=47.18 Aligned_cols=46 Identities=11% Similarity=0.112 Sum_probs=36.1
Q ss_pred CccccCCcc-----------CCCCCcceecCCCCCCCCCCCccee-eecCCCchh-h-hcccCcccc
Q 030227 112 VPVPVNGME-----------ISHHSMRISEPPPPGVTHESNGYET-HLNVTNYDY-S-RRVFGATLD 164 (181)
Q Consensus 112 ~~~~~~~~~-----------f~~~g~i~~~~~~~~~~~~~kG~gf-~f~~~~~~~-a-~~~~g~~~~ 164 (181)
..+++.+|| |+++|+|..+.++ +|||| .|.+.+.+. | ..++|..++
T Consensus 9 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~ 68 (90)
T 2dnq_A 9 VKLFIGNLPREATEQEIRSLFEQYGKVLECDII-------KNYGFVHIEDKTAAEDAIRNLHHYKLH 68 (90)
T ss_dssp EEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE-------TTEEEEEESSHHHHHHHHHHHTTCBCS
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHhcCCccC
Confidence 467777777 7999999998887 79999 887665444 4 778888777
No 338
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.11 E-value=0.00031 Score=46.27 Aligned_cols=48 Identities=6% Similarity=-0.110 Sum_probs=34.9
Q ss_pred CccccCCcc-----------CCCCCcceecCCCCCCCCCCCccee-eecCCCch-hh-hcc--cCcccc
Q 030227 112 VPVPVNGME-----------ISHHSMRISEPPPPGVTHESNGYET-HLNVTNYD-YS-RRV--FGATLD 164 (181)
Q Consensus 112 ~~~~~~~~~-----------f~~~g~i~~~~~~~~~~~~~kG~gf-~f~~~~~~-~a-~~~--~g~~~~ 164 (181)
..+++.+|| |++||+|..+.++.+ ||||| +|.+.+.+ .| ..+ ++..+.
T Consensus 16 ~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~ 79 (101)
T 2cq1_A 16 RVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG-----KNQAFLELATEEAAITMVNYYSAVTPHLR 79 (101)
T ss_dssp SEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCCEET
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhccCCceEC
Confidence 467888888 899999999988765 99999 98776544 44 443 344444
No 339
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=97.08 E-value=4.7e-05 Score=49.78 Aligned_cols=40 Identities=10% Similarity=-0.032 Sum_probs=32.1
Q ss_pred CCCCCcceecCCCCCCCCCCCccee-eecCCCchh-h-hcccCcccc
Q 030227 121 ISHHSMRISEPPPPGVTHESNGYET-HLNVTNYDY-S-RRVFGATLD 164 (181)
Q Consensus 121 f~~~g~i~~~~~~~~~~~~~kG~gf-~f~~~~~~~-a-~~~~g~~~~ 164 (181)
|+++|+|..+.++.+ ++|||| .|.+.+.+. | ..++|..++
T Consensus 21 F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~ 63 (101)
T 2hvz_A 21 FSYYGPLRTVWIARN----PPGFAFVEFEDPRDAEDAVRGLDGKVIC 63 (101)
T ss_dssp HHHHCCCSEEEEESS----SSSEEEEECSSHHHHHHHHHHHHHSCSS
T ss_pred HHhcCCeEEEEEeeC----CCCEEEEEECCHHHHHHHHHHHCCCeEC
Confidence 789999999998887 899999 887765444 4 668888776
No 340
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.05 E-value=0.00013 Score=48.49 Aligned_cols=48 Identities=6% Similarity=-0.078 Sum_probs=35.6
Q ss_pred CccccCCcc-----------CCCCCcceecCCCCCCCCCCCccee-eecCCC-chhh-hccc--Ccccc
Q 030227 112 VPVPVNGME-----------ISHHSMRISEPPPPGVTHESNGYET-HLNVTN-YDYS-RRVF--GATLD 164 (181)
Q Consensus 112 ~~~~~~~~~-----------f~~~g~i~~~~~~~~~~~~~kG~gf-~f~~~~-~~~a-~~~~--g~~~~ 164 (181)
..+++.+|| |++||+|..+.++.+ ||||| +|.+.+ ++.| ..++ |..|+
T Consensus 17 ~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~-----kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~ 80 (105)
T 1sjq_A 17 RVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-----KNQAFIEMNTEEAANTMVNYYTSVTPVLR 80 (105)
T ss_dssp CEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTTSCCEET
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHhccCCceEC
Confidence 577888888 899999999998875 89999 887765 4444 5454 34444
No 341
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.04 E-value=0.0029 Score=41.18 Aligned_cols=81 Identities=11% Similarity=0.030 Sum_probs=56.9
Q ss_pred CCCeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCC--CcceEEEEEeCCHHHHHHHHHHhCCCeeeCCe----E
Q 030227 7 SGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETD--KPKGFAFVEYESEEIADYAIKLFSGIVTLYNR----T 80 (181)
Q Consensus 7 ~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~--~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~----~ 80 (181)
-+-+|.|..||+..||+++.+.+...-++.....+..+.+. ....-|||.|.+.++.....+..+|.+-++.+ +
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~ 87 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYP 87 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEE
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEee
Confidence 46689999999999999998887765444333333322222 13346899999999999999999998445443 4
Q ss_pred EEEEecC
Q 030227 81 LRFALSG 87 (181)
Q Consensus 81 i~v~~a~ 87 (181)
..|++|.
T Consensus 88 a~VE~AP 94 (97)
T 2l08_A 88 AVVEFAP 94 (97)
T ss_dssp EEEEECC
T ss_pred eEEEecC
Confidence 5566653
No 342
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.98 E-value=0.00043 Score=44.75 Aligned_cols=48 Identities=10% Similarity=0.133 Sum_probs=38.5
Q ss_pred CccccCCcc-----------CCCCCcceecCCCCCCCCCCCccee-eecCCCch-hh-hcccCcccc
Q 030227 112 VPVPVNGME-----------ISHHSMRISEPPPPGVTHESNGYET-HLNVTNYD-YS-RRVFGATLD 164 (181)
Q Consensus 112 ~~~~~~~~~-----------f~~~g~i~~~~~~~~~~~~~kG~gf-~f~~~~~~-~a-~~~~g~~~~ 164 (181)
..+++.+|| |+++|.|..+.++.+ +|||| .|.+.+.+ .| ..+||..++
T Consensus 18 ~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~ 79 (97)
T 1why_A 18 TRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG-----DSFAYIQYESLDAAQAACAKMRGFPLG 79 (97)
T ss_dssp SCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS-----SCCEEEEESSHHHHHHHHHHHTTCBCS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC-----CCEEEEEECCHHHHHHHHHHHCCCEeC
Confidence 577888888 799999999988764 89999 88766544 44 779999887
No 343
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.98 E-value=0.00026 Score=46.20 Aligned_cols=50 Identities=14% Similarity=0.177 Sum_probs=37.8
Q ss_pred CccccCCcc-----------CCCCCcceecCCCCC-CCCCCCccee-eecCCCch-hh-hcccCcccc
Q 030227 112 VPVPVNGME-----------ISHHSMRISEPPPPG-VTHESNGYET-HLNVTNYD-YS-RRVFGATLD 164 (181)
Q Consensus 112 ~~~~~~~~~-----------f~~~g~i~~~~~~~~-~~~~~kG~gf-~f~~~~~~-~a-~~~~g~~~~ 164 (181)
..+++.+|| |.++ ..+.++.+ .++.++|||| .|.+.+.+ .| ..++|..|+
T Consensus 16 ~~l~V~nLp~~~t~~~l~~~F~~~---~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 80 (102)
T 2fc8_A 16 KTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEID 80 (102)
T ss_dssp SSEEEECCCTTCCHHHHHHTSTTC---SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CEEEEeCCCCccCHHHHHHHhcCC---eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeEC
Confidence 678888888 4544 46677777 7889999999 88766544 44 778998887
No 344
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=96.95 E-value=0.00023 Score=47.29 Aligned_cols=46 Identities=11% Similarity=0.104 Sum_probs=37.3
Q ss_pred CccccCCcc-----------CCCCCcceecCCCCCCCCCCCccee-eecCCCch-hh-hcccCcccc
Q 030227 112 VPVPVNGME-----------ISHHSMRISEPPPPGVTHESNGYET-HLNVTNYD-YS-RRVFGATLD 164 (181)
Q Consensus 112 ~~~~~~~~~-----------f~~~g~i~~~~~~~~~~~~~kG~gf-~f~~~~~~-~a-~~~~g~~~~ 164 (181)
..+++.+|| |+++|.|..+.++ +|||| .|.+.+.+ .| ..++|..++
T Consensus 32 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~-------kg~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (108)
T 2jvo_A 32 TRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL-------NGFAFVEFEEAESAAKAIEEVHGKSFA 91 (108)
T ss_dssp SEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE-------TTEEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 578888888 7999999888887 89999 88766544 44 778998886
No 345
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=96.94 E-value=0.0001 Score=54.34 Aligned_cols=98 Identities=8% Similarity=0.001 Sum_probs=57.8
Q ss_pred CHHHHHHHHHHh--CCCeeeCCeEEEEEecCCCCCCCCCCCccCCCCCCCCCCCCCccccCCcc-----------CCCCC
Q 030227 59 SEEIADYAIKLF--SGIVTLYNRTLRFALSGQDKNTQNSSMTTTPLSSRKSRSDPVPVPVNGME-----------ISHHS 125 (181)
Q Consensus 59 ~~~~a~~al~~l--~g~~~i~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------f~~~g 125 (181)
+.+.+..|++.. .. +.+.+...+|..... .+.+...... ........+++.+|| |+++|
T Consensus 63 d~~~I~~Al~~S~~~~-lev~ed~~~vrR~~~-~p~p~~~~~~------~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G 134 (193)
T 2voo_A 63 DFNVIVEALSKSKAEL-MEISEDKTKIRRSPS-KPLPEVTDEY------KNDVKNRSVYIKGFPTDATLDDIKEWLEDKG 134 (193)
T ss_dssp CHHHHHHHHHTCSSCC-EEECTTSSEEEECTT-SCCCCCCHHH------HHHHHHTEEEEECCCTTCCHHHHHHHHTTSC
T ss_pred CHHHHHHHHhhcccce-EEEecccceEEeccc-CCCcccchhh------hhccccCEEEecCCCCcCCHHHHHHHHhcCC
Confidence 667888888866 33 366665455544311 1110000000 000001367777777 89999
Q ss_pred cceecCCCCCCCCCCCccee-eecCCCchhh-hcccCcccc
Q 030227 126 MRISEPPPPGVTHESNGYET-HLNVTNYDYS-RRVFGATLD 164 (181)
Q Consensus 126 ~i~~~~~~~~~~~~~kG~gf-~f~~~~~~~a-~~~~g~~~~ 164 (181)
.|..++++.+.++.++|||| .|.+.+.+.. -+..+..++
T Consensus 135 ~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~ 175 (193)
T 2voo_A 135 QVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYK 175 (193)
T ss_dssp CEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTTCEET
T ss_pred CEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCCCeEC
Confidence 99999999997799999999 8877654444 333333443
No 346
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.93 E-value=0.00017 Score=47.79 Aligned_cols=48 Identities=19% Similarity=0.255 Sum_probs=38.8
Q ss_pred CccccCCcc-----------CCCCCcceecCCCCCCCCCCCccee-eecCCCc-hhh-hcccCcccc
Q 030227 112 VPVPVNGME-----------ISHHSMRISEPPPPGVTHESNGYET-HLNVTNY-DYS-RRVFGATLD 164 (181)
Q Consensus 112 ~~~~~~~~~-----------f~~~g~i~~~~~~~~~~~~~kG~gf-~f~~~~~-~~a-~~~~g~~~~ 164 (181)
..+++.+|| |.++|.|..+.++.+ +|||| .|.+.+. +.| ..++|..|+
T Consensus 26 ~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~g~afV~f~~~~~a~~A~~~l~g~~~~ 87 (109)
T 1x4g_A 26 CTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTIE 87 (109)
T ss_dssp CEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-----CCEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 477888888 789999999998876 89999 8877654 444 788888887
No 347
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=96.88 E-value=0.00017 Score=48.46 Aligned_cols=48 Identities=15% Similarity=0.149 Sum_probs=38.3
Q ss_pred CccccCCcc-----------CCCCCcceecCCCCCCCCCCCccee-eecCCC-chhh-hcccCccccc
Q 030227 112 VPVPVNGME-----------ISHHSMRISEPPPPGVTHESNGYET-HLNVTN-YDYS-RRVFGATLDS 165 (181)
Q Consensus 112 ~~~~~~~~~-----------f~~~g~i~~~~~~~~~~~~~kG~gf-~f~~~~-~~~a-~~~~g~~~~~ 165 (181)
..+++.+|| |.++|+|..+.++.+ |||| +|.+.+ ++.| ..|||..|+.
T Consensus 17 ~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~~g 78 (115)
T 3beg_B 17 NRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKFRS 78 (115)
T ss_dssp CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT------SEEEEEESSHHHHHHHHHHHTTCBCCC
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC------CEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 577777777 799999999998876 9999 887754 4455 7789988875
No 348
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=96.85 E-value=0.00029 Score=45.93 Aligned_cols=48 Identities=2% Similarity=-0.006 Sum_probs=38.1
Q ss_pred CccccCCcc-----------CCCCCcceecCCCCCCCCCCCccee-eecCCC-chhh-hcccCcccc
Q 030227 112 VPVPVNGME-----------ISHHSMRISEPPPPGVTHESNGYET-HLNVTN-YDYS-RRVFGATLD 164 (181)
Q Consensus 112 ~~~~~~~~~-----------f~~~g~i~~~~~~~~~~~~~kG~gf-~f~~~~-~~~a-~~~~g~~~~ 164 (181)
..+++.+|| |+++|.|..+.+. .++|||| .|.+.+ ++.| ..++|..++
T Consensus 28 ~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 89 (101)
T 2la4_A 28 TTAYIGNIPHFATEADLIPLFQNFGFILDFKHY-----PEKGCCFIKYDTHEQAAVCIVALANFPFQ 89 (101)
T ss_dssp CEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE-----TTTTEEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe-----cCCCEEEEEECCHHHHHHHHHHhCCCeEC
Confidence 467888887 7999999888876 5699999 887665 4445 788998887
No 349
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.85 E-value=0.00019 Score=48.50 Aligned_cols=47 Identities=15% Similarity=0.227 Sum_probs=37.2
Q ss_pred Ccccc--CCcc-----------CCCCCcceecCCCCCCCCCCCccee-eecCCC-chhh-hcccCccc
Q 030227 112 VPVPV--NGME-----------ISHHSMRISEPPPPGVTHESNGYET-HLNVTN-YDYS-RRVFGATL 163 (181)
Q Consensus 112 ~~~~~--~~~~-----------f~~~g~i~~~~~~~~~~~~~kG~gf-~f~~~~-~~~a-~~~~g~~~ 163 (181)
..+.+ .+|+ |++||+|..+.++.+ ||||| .|.+.+ ++.| ..|||..+
T Consensus 26 ~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~-----rgfaFV~f~~~~~A~~Ai~~lnG~~~ 88 (114)
T 2cq2_A 26 QSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN-----KPYSFARYRTTEESKRAYVTLNGKEV 88 (114)
T ss_dssp SEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT-----CSCEEEEESSHHHHHHHHHHTTTCEE
T ss_pred CEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEE
Confidence 35677 5576 899999999988753 89999 887754 5566 89999988
No 350
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.84 E-value=0.00026 Score=47.24 Aligned_cols=49 Identities=6% Similarity=-0.078 Sum_probs=37.9
Q ss_pred CccccCCcc-----------CCCCCcceecCCCCCCCCCCCccee-eecCCC-chhh-hcccCccccc
Q 030227 112 VPVPVNGME-----------ISHHSMRISEPPPPGVTHESNGYET-HLNVTN-YDYS-RRVFGATLDS 165 (181)
Q Consensus 112 ~~~~~~~~~-----------f~~~g~i~~~~~~~~~~~~~kG~gf-~f~~~~-~~~a-~~~~g~~~~~ 165 (181)
..+++.+|| |++||.|..+.++. ++|||| .|.+.+ ++.| ..|||..|+.
T Consensus 11 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 73 (111)
T 1whx_A 11 TVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE-----GGITAIVEFLEPLEARKAFRHLAYSKFHH 73 (111)
T ss_dssp EEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS-----SSSCEEEEESCHHHHHHHHHHHTTCBSSS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC-----CCCEEEEEeCCHHHHHHHHHHhCCCEECC
Confidence 356677777 89999999999884 689999 887655 4455 8899988873
No 351
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.80 E-value=0.00088 Score=43.26 Aligned_cols=48 Identities=13% Similarity=0.085 Sum_probs=36.2
Q ss_pred CccccCCcc---------CCCCCcceecCCCCCCCCCCCccee-eecCCC-chhh-hcccCcccc
Q 030227 112 VPVPVNGME---------ISHHSMRISEPPPPGVTHESNGYET-HLNVTN-YDYS-RRVFGATLD 164 (181)
Q Consensus 112 ~~~~~~~~~---------f~~~g~i~~~~~~~~~~~~~kG~gf-~f~~~~-~~~a-~~~~g~~~~ 164 (181)
..+++.++. |.++|+|..+.++ .++|||| .|.+.+ ++.| ..++|..+.
T Consensus 16 ~~l~V~n~~~t~~~l~~~F~~~G~i~~v~i~-----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~ 75 (97)
T 1x5p_A 16 NTLYVYGEDMTPTLLRGAFSPFGNIIDLSMD-----PPRNCAFVTYEKMESADQAVAELNGTQVE 75 (97)
T ss_dssp SEEEEECSSCCHHHHHHHHTTTSCEEEEEEE-----TTTTEEEEEESSHHHHHHHHHHTTTEEET
T ss_pred CEEEEcCCCCCHHHHHHHHhhCCCEEEEEec-----CCCCEEEEEECCHHHHHHHHHHhCCCeEC
Confidence 455565544 8999999888884 6799999 886665 4444 788998887
No 352
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=96.73 E-value=9e-05 Score=51.66 Aligned_cols=53 Identities=13% Similarity=-0.038 Sum_probs=40.3
Q ss_pred CccccCCcc-----------CCCCCcceec--CCCCC----CCCCCCccee-eecCCCch-hh-hcccCcccc
Q 030227 112 VPVPVNGME-----------ISHHSMRISE--PPPPG----VTHESNGYET-HLNVTNYD-YS-RRVFGATLD 164 (181)
Q Consensus 112 ~~~~~~~~~-----------f~~~g~i~~~--~~~~~----~~~~~kG~gf-~f~~~~~~-~a-~~~~g~~~~ 164 (181)
..+++.+|| |+++|.|..+ .++.+ .++.++|||| .|.+.+.+ .| ..+||..|.
T Consensus 46 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~ 118 (143)
T 3egn_A 46 CRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLF 118 (143)
T ss_dssp SEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEET
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeC
Confidence 578888888 7999999876 33333 6788999999 88766544 44 779999887
No 353
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=96.71 E-value=9.4e-05 Score=50.28 Aligned_cols=45 Identities=4% Similarity=-0.150 Sum_probs=36.1
Q ss_pred CCCCCcceecCCCCC-C----CCCCCccee-eecCCC-chhh-hcccCccccc
Q 030227 121 ISHHSMRISEPPPPG-V----THESNGYET-HLNVTN-YDYS-RRVFGATLDS 165 (181)
Q Consensus 121 f~~~g~i~~~~~~~~-~----~~~~kG~gf-~f~~~~-~~~a-~~~~g~~~~~ 165 (181)
|++||+|.++.++.+ . ++.++|||| .|.+.+ +..| ..|||..++.
T Consensus 46 f~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 46 CGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp HTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred HhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 899999999999987 3 356789999 887665 4445 9999998874
No 354
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.66 E-value=0.00042 Score=43.54 Aligned_cols=49 Identities=4% Similarity=-0.034 Sum_probs=37.6
Q ss_pred CccccCCcc-----------CCCCCcceecCCCCCCCCCCCccee-eecCCCchhh--hcc-cCccccc
Q 030227 112 VPVPVNGME-----------ISHHSMRISEPPPPGVTHESNGYET-HLNVTNYDYS--RRV-FGATLDS 165 (181)
Q Consensus 112 ~~~~~~~~~-----------f~~~g~i~~~~~~~~~~~~~kG~gf-~f~~~~~~~a--~~~-~g~~~~~ 165 (181)
..+.+.+|| |.++|.|..+.++. ++|||| .|.+.+.+.. .++ +|..++.
T Consensus 13 ~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~-----~kg~afV~f~~~~~A~~a~~~l~~~~~~~g 76 (85)
T 2ytc_A 13 TTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ-----RQQCAFIQFATRQAAEVAAEKSFNKLIVNG 76 (85)
T ss_dssp CCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG-----GGTEEEEEESSHHHHHHHHHTTTTTCEETT
T ss_pred cEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC-----CCCEEEEEECCHHHHHHHHHHhcCCeeECC
Confidence 577788887 79999999988886 489999 8877654444 667 8877763
No 355
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=96.64 E-value=0.00043 Score=46.67 Aligned_cols=42 Identities=10% Similarity=-0.045 Sum_probs=34.0
Q ss_pred CCCCCcceecCCCCCCCCCCCccee-eecCCC-chhh-hcccCccccc
Q 030227 121 ISHHSMRISEPPPPGVTHESNGYET-HLNVTN-YDYS-RRVFGATLDS 165 (181)
Q Consensus 121 f~~~g~i~~~~~~~~~~~~~kG~gf-~f~~~~-~~~a-~~~~g~~~~~ 165 (181)
|++||.|..+.++.+. ++|||| .|.+.+ +..| +.|||..++.
T Consensus 38 f~kfG~V~~v~i~~~~---~~G~~fV~f~~~e~A~~Ai~~lnG~~f~G 82 (114)
T 3s6e_A 38 CNKHGGVIHIYVDKNS---AQGNVYVKCPSIAAAIAAVNALHGRWFAG 82 (114)
T ss_dssp HTTTTCCSEEEECTTC---TTCCEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred HhccCCEEEEEEecCC---CcEEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 8999999999987763 599999 887764 4455 8999999873
No 356
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=96.63 E-value=0.0021 Score=42.43 Aligned_cols=46 Identities=13% Similarity=0.072 Sum_probs=34.7
Q ss_pred CccccCCcc------------CCCCCcceecCCCCCCCCCCCccee-eecCCCch-hh-hcccCcccc
Q 030227 112 VPVPVNGME------------ISHHSMRISEPPPPGVTHESNGYET-HLNVTNYD-YS-RRVFGATLD 164 (181)
Q Consensus 112 ~~~~~~~~~------------f~~~g~i~~~~~~~~~~~~~kG~gf-~f~~~~~~-~a-~~~~g~~~~ 164 (181)
..+++.+|| |.++|.|..+.+ ++|||| .|.+.+.+ .| ..++|..|+
T Consensus 28 ~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i-------~~g~afV~f~~~~~A~~A~~~l~g~~~~ 88 (110)
T 1wf1_A 28 SRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV-------HKGYAFVQYSNERHARAAVLGENGRVLA 88 (110)
T ss_dssp SEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE-------ETTEEEEECSSSHHHHHHHHHHTTCEET
T ss_pred cEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE-------eCCEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 456666666 678999988877 699999 88776544 44 788888887
No 357
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.61 E-value=0.00044 Score=44.75 Aligned_cols=50 Identities=10% Similarity=-0.014 Sum_probs=37.4
Q ss_pred CccccCCcc-----------CCCCCcceecCCCCCCCCCCCccee-eecCCC-chhh-hcccCccccc
Q 030227 112 VPVPVNGME-----------ISHHSMRISEPPPPGVTHESNGYET-HLNVTN-YDYS-RRVFGATLDS 165 (181)
Q Consensus 112 ~~~~~~~~~-----------f~~~g~i~~~~~~~~~~~~~kG~gf-~f~~~~-~~~a-~~~~g~~~~~ 165 (181)
..+++.+|| |.++|.|. +.++ ++.++|||| .|.+.+ ++.| ..+||..++.
T Consensus 20 ~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 83 (97)
T 2e5j_A 20 ADVYVGNLPRDARVSDLKRALRELGSVP-LRLT---WQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGT 83 (97)
T ss_dssp CEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEE---EETTTTEEEEECSSHHHHHHHHHHHTTCCSSS
T ss_pred CEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEE---cCCCCcEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 578888888 78889884 4444 457899999 887665 4445 7889998874
No 358
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.61 E-value=0.0006 Score=43.59 Aligned_cols=46 Identities=11% Similarity=0.091 Sum_probs=36.4
Q ss_pred CccccCCcc-----------CCCCCcceecCCCCCCCCCCCccee-eecCCC-chhh-hcccCcccc
Q 030227 112 VPVPVNGME-----------ISHHSMRISEPPPPGVTHESNGYET-HLNVTN-YDYS-RRVFGATLD 164 (181)
Q Consensus 112 ~~~~~~~~~-----------f~~~g~i~~~~~~~~~~~~~kG~gf-~f~~~~-~~~a-~~~~g~~~~ 164 (181)
..+++.+|| |+++|.|..+.++ +|||| .|.+.+ ++.| ..+||..++
T Consensus 11 ~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~-------~~~afV~f~~~~~a~~A~~~l~g~~~~ 70 (92)
T 2dgt_A 11 TKLHVGNISPTCTNQELRAKFEEYGPVIECDIV-------KDYAFVHMERAEDAVEAIRGLDNTEFQ 70 (92)
T ss_dssp EEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC-------SSEEEEEESCHHHHHHHHHHHTTEEET
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE-------CCEEEEEECCHHHHHHHHHHhCCCeeC
Confidence 577788887 7999999998887 55999 887754 4445 788998887
No 359
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=96.60 E-value=0.00013 Score=47.21 Aligned_cols=42 Identities=10% Similarity=0.031 Sum_probs=33.0
Q ss_pred CCCCCcceecCCCCCCCCCCCccee-eecCCCc-hhh-hcccCcccc
Q 030227 121 ISHHSMRISEPPPPGVTHESNGYET-HLNVTNY-DYS-RRVFGATLD 164 (181)
Q Consensus 121 f~~~g~i~~~~~~~~~~~~~kG~gf-~f~~~~~-~~a-~~~~g~~~~ 164 (181)
|+++|.|..+.++. ++.++|||| .|.+.+. +.| ..++|..++
T Consensus 33 f~~~G~i~~v~i~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 77 (97)
T 1nu4_A 33 FSRFGQILDILVSR--SLKMRGQAFVIFKEVSSATNALRSMQGFPFY 77 (97)
T ss_dssp HGGGSCEEEEECCH--HHHHTTCEEEEESSHHHHHHHHHHHTTCEET
T ss_pred HHhCCCEEEEEEEc--CCCcCcEEEEEeCCHHHHHHHHHHhCCCEEC
Confidence 68899999988873 567899999 8876654 444 778998886
No 360
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=96.60 E-value=0.0002 Score=46.24 Aligned_cols=49 Identities=10% Similarity=0.063 Sum_probs=36.9
Q ss_pred CccccCCcc-----------CCCCCcceecCCCCCCCCCCCccee-eecCCCc-hhh-hcccCcccc
Q 030227 112 VPVPVNGME-----------ISHHSMRISEPPPPGVTHESNGYET-HLNVTNY-DYS-RRVFGATLD 164 (181)
Q Consensus 112 ~~~~~~~~~-----------f~~~g~i~~~~~~~~~~~~~kG~gf-~f~~~~~-~~a-~~~~g~~~~ 164 (181)
..+++.+|| |.++|+|..+ ..++.++|||| .|.+.+. +.| ..++|..++
T Consensus 17 ~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 79 (96)
T 1fjc_A 17 RTLLAKNLSFNITEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEID 79 (96)
T ss_dssp GEEEEESCCSSCCHHHHHHHHCSEEEECCE----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEET
T ss_pred CEEEEeCCCCCCCHHHHHHHHhhCCcEEEe----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 577888888 6788877555 66788999999 8876654 444 778888887
No 361
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.54 E-value=0.0013 Score=42.55 Aligned_cols=46 Identities=13% Similarity=0.101 Sum_probs=35.5
Q ss_pred CccccCCcc-----------CCCC--CcceecCCCCCCCCCCCccee-eecCCCch-hh-hcccCcccc
Q 030227 112 VPVPVNGME-----------ISHH--SMRISEPPPPGVTHESNGYET-HLNVTNYD-YS-RRVFGATLD 164 (181)
Q Consensus 112 ~~~~~~~~~-----------f~~~--g~i~~~~~~~~~~~~~kG~gf-~f~~~~~~-~a-~~~~g~~~~ 164 (181)
..+++.+|| |.++ |.|..+.++ +|||| .|.+.+.+ .| ..+||..++
T Consensus 16 ~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~ 77 (99)
T 2cpd_A 16 KILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI-------RDYAFVHFSNREDAVEAMKALNGKVLD 77 (99)
T ss_dssp CEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC-------SSEEEEEESSHHHHHHHHHHHSSEEET
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe-------CCeEEEEeCCHHHHHHHHHHhCCCEeC
Confidence 577888888 7888 888888765 78999 88776544 44 779998887
No 362
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.54 E-value=0.0017 Score=42.86 Aligned_cols=44 Identities=9% Similarity=-0.075 Sum_probs=33.3
Q ss_pred CccccCCcc-----------CCCCCcceecCCCCCCCCCCCccee-eecCCC-chhh-hcccC
Q 030227 112 VPVPVNGME-----------ISHHSMRISEPPPPGVTHESNGYET-HLNVTN-YDYS-RRVFG 160 (181)
Q Consensus 112 ~~~~~~~~~-----------f~~~g~i~~~~~~~~~~~~~kG~gf-~f~~~~-~~~a-~~~~g 160 (181)
..+++.+|| |++||+|..+.++.+ ||||| +|.+.+ ++.| ..++|
T Consensus 16 ~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~ 73 (104)
T 1wex_A 16 PVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF-----KRQALVEFENIDSAKECVTFAAD 73 (104)
T ss_dssp SEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhcc
Confidence 467888888 899999999888754 89999 887765 4444 54443
No 363
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.54 E-value=0.00065 Score=46.16 Aligned_cols=43 Identities=5% Similarity=-0.103 Sum_probs=33.1
Q ss_pred CccccCCcc-----------CCCCCcceecCCCCCCCCCCCccee-eecCCCchhh--hccc
Q 030227 112 VPVPVNGME-----------ISHHSMRISEPPPPGVTHESNGYET-HLNVTNYDYS--RRVF 159 (181)
Q Consensus 112 ~~~~~~~~~-----------f~~~g~i~~~~~~~~~~~~~kG~gf-~f~~~~~~~a--~~~~ 159 (181)
..+++.+|| |++||+|..+.++.+ ||||| +|.+.+.+.+ ..++
T Consensus 32 ~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~-----kG~AFVeF~~~e~A~~Ai~~l~ 88 (119)
T 2ad9_A 32 RVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-----KNQAFIEMNTEEAANTMVNYYT 88 (119)
T ss_dssp SEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG-----GTEEEEECSCHHHHHHHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhc
Confidence 467888888 899999999998865 89999 9977654443 4444
No 364
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=96.50 E-value=0.0007 Score=45.93 Aligned_cols=48 Identities=13% Similarity=0.085 Sum_probs=36.7
Q ss_pred CccccCCcc---------CCCCCcceecCCCCCCCCCCCccee-eecCCC-chhh-hcccCcccc
Q 030227 112 VPVPVNGME---------ISHHSMRISEPPPPGVTHESNGYET-HLNVTN-YDYS-RRVFGATLD 164 (181)
Q Consensus 112 ~~~~~~~~~---------f~~~g~i~~~~~~~~~~~~~kG~gf-~f~~~~-~~~a-~~~~g~~~~ 164 (181)
..+++.++. |+++|+|..+.++ .++|||| .|.+.+ ++.| ..++|..+.
T Consensus 40 ~~lfVgnl~~te~~L~~~F~~~G~I~~v~i~-----~~kg~aFV~f~~~~~A~~Ai~~lng~~~~ 99 (121)
T 2bz2_A 40 NTLYVYGEDMTPTLLRGAFSPFGNIIDLSMD-----PPRNCAFVTYEKMESADQAVAELNGTQVE 99 (121)
T ss_dssp CEEEEECSSCCHHHHHHHHSTTCCCSCEEEE-----TTTTEEEEECSSHHHHHHHHHHHTTCBCS
T ss_pred CEEEEcCCCCCHHHHHHHHHccCCEEEEEEe-----CCCCEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 456666655 8999999888875 6799999 887665 4445 788998887
No 365
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.45 E-value=0.00055 Score=43.82 Aligned_cols=47 Identities=11% Similarity=0.126 Sum_probs=33.9
Q ss_pred CccccCCcc-----------CCCCCc-ceecCCCCCCCCCCCccee-eecCCC-chhh-hcccC-cccc
Q 030227 112 VPVPVNGME-----------ISHHSM-RISEPPPPGVTHESNGYET-HLNVTN-YDYS-RRVFG-ATLD 164 (181)
Q Consensus 112 ~~~~~~~~~-----------f~~~g~-i~~~~~~~~~~~~~kG~gf-~f~~~~-~~~a-~~~~g-~~~~ 164 (181)
..+++.+|| |.++|. +..+.+ .++|||| .|.+.+ ++.| ..+|| ..++
T Consensus 9 ~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~------~~~g~afV~f~~~~~A~~A~~~l~g~~~~~ 71 (93)
T 2cqh_A 9 NKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVL------LKSGYAFVDYPDQNWAIRAIETLSGKVELH 71 (93)
T ss_dssp CCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEE------EETTEEEECCSCHHHHHHHHHHHTTTCEET
T ss_pred cEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEE------cCCCEEEEEECCHHHHHHHHHHccCCeeEC
Confidence 467788887 788888 444444 3699999 887755 4555 78999 7777
No 366
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.38 E-value=0.0024 Score=42.08 Aligned_cols=45 Identities=4% Similarity=-0.118 Sum_probs=32.4
Q ss_pred CccccCCcc------------CCCCCcceecCCCCCCCCCCCccee-eecCCCch-hh-hcccCc
Q 030227 112 VPVPVNGME------------ISHHSMRISEPPPPGVTHESNGYET-HLNVTNYD-YS-RRVFGA 161 (181)
Q Consensus 112 ~~~~~~~~~------------f~~~g~i~~~~~~~~~~~~~kG~gf-~f~~~~~~-~a-~~~~g~ 161 (181)
..+++.+|| |.+||+|..+.++.+ +|||| +|.+.+.+ .| +.++|.
T Consensus 16 ~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~ 75 (102)
T 1x4d_A 16 RVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK-----INEAFIEMATTEDAQAAVDYYTTT 75 (102)
T ss_dssp CEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS-----SSCEEEEESSHHHHHHHHHHHHHS
T ss_pred CEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHHcCC
Confidence 356666666 799999999998865 69999 98776544 44 655543
No 367
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=96.36 E-value=0.00079 Score=43.68 Aligned_cols=46 Identities=4% Similarity=-0.106 Sum_probs=34.6
Q ss_pred CccccCCcc------------CCCCCcceecCCCCCCCCCCCccee-eecCCCch-hh-hcccCcccc
Q 030227 112 VPVPVNGME------------ISHHSMRISEPPPPGVTHESNGYET-HLNVTNYD-YS-RRVFGATLD 164 (181)
Q Consensus 112 ~~~~~~~~~------------f~~~g~i~~~~~~~~~~~~~kG~gf-~f~~~~~~-~a-~~~~g~~~~ 164 (181)
..+++.+|| |+++|.|..+.++ +|||| .|.+.+.+ .| ..++|..++
T Consensus 23 ~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (97)
T 2xnq_A 23 SRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-------NAFGFIQFDNPQSVRDAIEXESQEMNF 83 (97)
T ss_dssp CEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC-------SSEEEEEESSHHHHHHHHHHHTTSEET
T ss_pred CEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-------CCEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 456666665 6899999888884 89999 88766544 44 779998886
No 368
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.31 E-value=0.001 Score=42.24 Aligned_cols=46 Identities=11% Similarity=0.118 Sum_probs=36.2
Q ss_pred CccccCCcc-----------CCCCCcceecCCCCCCCCCCCccee-eecCCCch-hh-hcccCcccc
Q 030227 112 VPVPVNGME-----------ISHHSMRISEPPPPGVTHESNGYET-HLNVTNYD-YS-RRVFGATLD 164 (181)
Q Consensus 112 ~~~~~~~~~-----------f~~~g~i~~~~~~~~~~~~~kG~gf-~f~~~~~~-~a-~~~~g~~~~ 164 (181)
..+++.+|| |.++|.|..+.++ +|||| .|.+.+.+ .| ..++|..++
T Consensus 10 ~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~-------~~~afV~f~~~~~a~~A~~~l~g~~~~ 69 (90)
T 2dnp_A 10 WKIFVGNVSAACTSQELRSLFERRGRVIECDVV-------KDYAFVHMEKEADAKAAIAQLNGKEVK 69 (90)
T ss_dssp CCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC-------SSCEEEEESCHHHHHHHHHHHTTCEET
T ss_pred CEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 567788887 7899999999887 55999 88776544 44 778888887
No 369
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.30 E-value=0.0028 Score=41.16 Aligned_cols=43 Identities=9% Similarity=-0.034 Sum_probs=32.8
Q ss_pred ccccCCcc---------------CCCC-CcceecCCCCCCCCCCCccee-eecCCCch-hh-hcccCcccc
Q 030227 113 PVPVNGME---------------ISHH-SMRISEPPPPGVTHESNGYET-HLNVTNYD-YS-RRVFGATLD 164 (181)
Q Consensus 113 ~~~~~~~~---------------f~~~-g~i~~~~~~~~~~~~~kG~gf-~f~~~~~~-~a-~~~~g~~~~ 164 (181)
.+.+.+|| |++| |+|..+ ++ |+|| .|.+.+.+ .| ++|+|..|.
T Consensus 11 ~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V------tg---G~AfV~F~~~esA~~A~~~l~G~~l~ 72 (96)
T 2diu_A 11 LLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI------TG---CSAILRFINQDSAERAQKRMENEDVF 72 (96)
T ss_dssp EEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC------CT---TCEEEEESSHHHHHHHHHHHTTCCSS
T ss_pred EEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE------ec---CEEEEEECCHHHHHHHHHHhcCCccC
Confidence 36678887 6888 498888 22 9999 88777655 45 889999887
No 370
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=96.27 E-value=0.00039 Score=45.80 Aligned_cols=46 Identities=7% Similarity=-0.068 Sum_probs=35.3
Q ss_pred CccccCCcc-----------CCCCCcceecCCCCCCCCCCCccee-eecCCCchhh--hcccCcc
Q 030227 112 VPVPVNGME-----------ISHHSMRISEPPPPGVTHESNGYET-HLNVTNYDYS--RRVFGAT 162 (181)
Q Consensus 112 ~~~~~~~~~-----------f~~~g~i~~~~~~~~~~~~~kG~gf-~f~~~~~~~a--~~~~g~~ 162 (181)
..+.+.+|| |++||.|..+.++. +||||| +|.+.+.+.+ ..++|..
T Consensus 22 ~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~-----~kg~AFVef~~~~~A~~Av~~ln~~~ 81 (100)
T 3r27_A 22 PVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP-----KKRQALVEFEDVLGACNAVNYAADNQ 81 (100)
T ss_dssp SEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET-----TTTEEEEEESSHHHHHHHHHHHHHSC
T ss_pred cEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc-----CCCEEEEEECCHHHHHHHHHHhcCCC
Confidence 367778887 89999999988874 589999 9977654444 7777665
No 371
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.27 E-value=0.0024 Score=53.05 Aligned_cols=55 Identities=24% Similarity=0.225 Sum_probs=42.0
Q ss_pred CCeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHH
Q 030227 8 GCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIK 68 (181)
Q Consensus 8 ~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~ 68 (181)
.+.|+|. .|..+++.+|.++|++||.|..+.+-+++ .-|+.|+|.+.++++.++.
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHh
Confidence 5789997 79999999999999999999999887653 2699999999999987754
No 372
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=96.26 E-value=0.00055 Score=49.13 Aligned_cols=51 Identities=6% Similarity=-0.063 Sum_probs=38.3
Q ss_pred CccccCCcc-----------CCCCCcceecCCCCCCCCCCCccee-eecCCC-chhh-hcccCccccc
Q 030227 112 VPVPVNGME-----------ISHHSMRISEPPPPGVTHESNGYET-HLNVTN-YDYS-RRVFGATLDS 165 (181)
Q Consensus 112 ~~~~~~~~~-----------f~~~g~i~~~~~~~~~~~~~kG~gf-~f~~~~-~~~a-~~~~g~~~~~ 165 (181)
..+.+.+|+ |++||+|..+.+..+ .++|||| +|.+.+ ++.| +.|||..|..
T Consensus 47 l~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k---~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g 111 (164)
T 1sjr_A 47 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK---NNQFQALLQYADPVSAQHAKLSLDGQNIYN 111 (164)
T ss_dssp EEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES---SSCEEEEEEESCHHHHHHHHHHSTTBCSSS
T ss_pred EEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC---CCCCEEEEEECCHHHHHHHHHHhCCCEecC
Confidence 455667777 899999999888533 3689999 886654 5556 8899999853
No 373
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=96.22 E-value=0.0025 Score=43.52 Aligned_cols=49 Identities=8% Similarity=-0.042 Sum_probs=37.2
Q ss_pred CccccCCcc-----------CCCCCcceecCCCCCCCCCCCcc-ee-eecCCC-chhh-hcccCccccc
Q 030227 112 VPVPVNGME-----------ISHHSMRISEPPPPGVTHESNGY-ET-HLNVTN-YDYS-RRVFGATLDS 165 (181)
Q Consensus 112 ~~~~~~~~~-----------f~~~g~i~~~~~~~~~~~~~kG~-gf-~f~~~~-~~~a-~~~~g~~~~~ 165 (181)
..+.+.+|+ |++||+|..+.+... .|| || +|.+.+ ++.| +.|||..|..
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g 89 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR-----NGIQAMVEFESVLCAQKAKAALNGADIYA 89 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES-----SSEEEEEEESSHHHHHHHHHHHTTCCCBT
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEecC
Confidence 345577777 899999999888532 386 99 887764 5566 8899999865
No 374
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=96.19 E-value=0.00057 Score=43.40 Aligned_cols=48 Identities=4% Similarity=-0.120 Sum_probs=35.8
Q ss_pred CccccCCcc-----------CCCCCcceecCCCCCCCCCCCccee-eecCCC-chhh-hcccCccccc
Q 030227 112 VPVPVNGME-----------ISHHSMRISEPPPPGVTHESNGYET-HLNVTN-YDYS-RRVFGATLDS 165 (181)
Q Consensus 112 ~~~~~~~~~-----------f~~~g~i~~~~~~~~~~~~~kG~gf-~f~~~~-~~~a-~~~~g~~~~~ 165 (181)
..+++.+|| |.++ +|..+.++ .++|||| .|.+.+ ++.| +.+||..++.
T Consensus 6 ~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~-----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g 67 (88)
T 1wg1_A 6 SGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD-----RNKRTAFVTLLNGEQAQNAIQMFHQYSFRG 67 (88)
T ss_dssp CCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE-----GGGTEEEECCSCHHHHHHHHHHHTTEEETT
T ss_pred CEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe-----CCCcEEEEEECCHHHHHHHHHHhCCCeECC
Confidence 356777777 7888 88887774 6899999 776664 4455 7799988873
No 375
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=95.99 E-value=0.0014 Score=42.80 Aligned_cols=46 Identities=13% Similarity=0.139 Sum_probs=35.9
Q ss_pred CccccCCcc-----------CCCCCcceecCCCCCCCCCCCccee-eecCCCchh-h-hcccCcccc
Q 030227 112 VPVPVNGME-----------ISHHSMRISEPPPPGVTHESNGYET-HLNVTNYDY-S-RRVFGATLD 164 (181)
Q Consensus 112 ~~~~~~~~~-----------f~~~g~i~~~~~~~~~~~~~kG~gf-~f~~~~~~~-a-~~~~g~~~~ 164 (181)
..+++.+|| |.++|.|..+.++ +|||| .|.+.+.+. | ..|+|..|+
T Consensus 12 ~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~-------~~~afV~f~~~~~a~~A~~~l~g~~~~ 71 (103)
T 2dgu_A 12 KVLFVRNLANTVTEEILEKAFSQFGKLERVKKL-------KDYAFIHFDERDGAVKAMEEMNGKDLE 71 (103)
T ss_dssp CCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC-------SSCEEEEESSHHHHHHHHHHHTTEEET
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE-------CCEEEEEeCCHHHHHHHHHHHCCCccC
Confidence 467788887 7899999998877 67999 887665444 4 778888887
No 376
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.94 E-value=0.0025 Score=41.81 Aligned_cols=36 Identities=6% Similarity=0.104 Sum_probs=27.3
Q ss_pred CCCCCcceecCCCCCCCCCCCccee-eecCCC-chhh-hcccC
Q 030227 121 ISHHSMRISEPPPPGVTHESNGYET-HLNVTN-YDYS-RRVFG 160 (181)
Q Consensus 121 f~~~g~i~~~~~~~~~~~~~kG~gf-~f~~~~-~~~a-~~~~g 160 (181)
|++||+|..+.++ +.++|||| +|.+.+ ++.| +.++|
T Consensus 38 F~~~G~V~~v~i~----~~~rGfaFVeF~~~~~A~~Ai~~~~~ 76 (100)
T 2d9o_A 38 LQKYGEVLNLVLS----SKKPGTAVVEFATVKAAELAVQNEVG 76 (100)
T ss_dssp HHTTSCEEEEEEE----SSSSSEEEEEESCHHHHHHHHHTCCB
T ss_pred HHhcCCEEEEEEc----cCCCCEEEEEECCHHHHHHHHHhcCC
Confidence 8999999998887 47899999 887664 4445 44443
No 377
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.88 E-value=0.0023 Score=42.54 Aligned_cols=42 Identities=12% Similarity=0.061 Sum_probs=32.1
Q ss_pred CCCCCcceecCCCCCCCCCCCccee-eecCCC-chhh-hcccCccccc
Q 030227 121 ISHHSMRISEPPPPGVTHESNGYET-HLNVTN-YDYS-RRVFGATLDS 165 (181)
Q Consensus 121 f~~~g~i~~~~~~~~~~~~~kG~gf-~f~~~~-~~~a-~~~~g~~~~~ 165 (181)
|+++|+|..+.+ .+. .++|||| .|.+.+ ++.| ..+||..++.
T Consensus 47 f~~~G~v~~v~i-~~~--~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 91 (112)
T 2dit_A 47 CSKFGQIRKLLL-FDR--HPDGVASVSFRDPEEADYCIQTLDGRWFGG 91 (112)
T ss_dssp GGGTSCCSEEEE-ETT--CTTCEEEEECSCHHHHHHHHHHSTTCEETT
T ss_pred HHccCCEeEEEE-ecC--CCCEEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 899999999866 332 3899999 887664 4445 8899988873
No 378
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.76 E-value=0.009 Score=38.10 Aligned_cols=48 Identities=10% Similarity=-0.054 Sum_probs=35.0
Q ss_pred CccccCCcc-----------CCCCCcceecCCCCC-CCCCCCccee-eecCCCchhh-hcccCcccc
Q 030227 112 VPVPVNGME-----------ISHHSMRISEPPPPG-VTHESNGYET-HLNVTNYDYS-RRVFGATLD 164 (181)
Q Consensus 112 ~~~~~~~~~-----------f~~~g~i~~~~~~~~-~~~~~kG~gf-~f~~~~~~~a-~~~~g~~~~ 164 (181)
..+++.+|| |.++|.|..+ +.+ .++. ||| .|.+.+.+.+ .+++|..|+
T Consensus 9 ~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~l~g~~~~ 70 (94)
T 2e5g_A 9 RSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLSQSQHSLG 70 (94)
T ss_dssp CEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHTCSCCEET
T ss_pred CEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHhcCCeEEC
Confidence 467777777 8999999887 444 4554 999 8877655444 339998887
No 379
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=95.68 E-value=0.0012 Score=45.56 Aligned_cols=41 Identities=7% Similarity=0.012 Sum_probs=32.5
Q ss_pred CCCCCcceecCCCCCCCCCCCcc-ee-eecCC-Cchhh-hcccCccccc
Q 030227 121 ISHHSMRISEPPPPGVTHESNGY-ET-HLNVT-NYDYS-RRVFGATLDS 165 (181)
Q Consensus 121 f~~~g~i~~~~~~~~~~~~~kG~-gf-~f~~~-~~~~a-~~~~g~~~~~ 165 (181)
|++||+|..+.+..+ ++|| || +|.+. +++.| +.|||..|..
T Consensus 49 Fs~yG~V~~V~i~~~----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g 93 (130)
T 3zzy_A 49 FSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYN 93 (130)
T ss_dssp HTTSSCEEEEEEEEE----TTEEEEEEEESCHHHHHHHHHHHTTCEEET
T ss_pred HhCcCCEEEEEEEcC----CCCcEEEEEECCHHHHHHHHHHcCCCeecC
Confidence 899999999987653 4788 99 88765 45555 9999999865
No 380
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=95.58 E-value=0.0028 Score=50.78 Aligned_cols=39 Identities=13% Similarity=0.157 Sum_probs=32.1
Q ss_pred CCCCCcceecCCCCCCCCCCCccee-eecCC-Cchhh-hcccCcccc
Q 030227 121 ISHHSMRISEPPPPGVTHESNGYET-HLNVT-NYDYS-RRVFGATLD 164 (181)
Q Consensus 121 f~~~g~i~~~~~~~~~~~~~kG~gf-~f~~~-~~~~a-~~~~g~~~~ 164 (181)
|++||+|..+.++. +||||| +|.+. +++.| +.|||..+-
T Consensus 41 F~~~G~V~~v~~~~-----~kgfaFV~f~~~~~A~~Ai~~lnG~~~~ 82 (345)
T 3tht_A 41 LEKCGLVDALLMPP-----NKPYSFARYRTTEESKRAYVTLNGKEVV 82 (345)
T ss_dssp HHTTSCEEEEECCT-----TCSEEEEEESSHHHHHHHHHHTTTCEEE
T ss_pred HHhcCCeEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCccc
Confidence 89999999988875 589999 88665 45555 999999883
No 381
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=95.49 E-value=0.0026 Score=47.34 Aligned_cols=46 Identities=4% Similarity=-0.173 Sum_probs=36.2
Q ss_pred CCCCCcceecCCCCC-----CCCCCCccee-eecCCCc-hhh-hcccCcccccC
Q 030227 121 ISHHSMRISEPPPPG-----VTHESNGYET-HLNVTNY-DYS-RRVFGATLDSI 166 (181)
Q Consensus 121 f~~~g~i~~~~~~~~-----~~~~~kG~gf-~f~~~~~-~~a-~~~~g~~~~~~ 166 (181)
|+++|+|.++.++.+ .++.++|++| .|.+.+. ..| +.|||..++..
T Consensus 150 ~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr 203 (222)
T 3dxb_A 150 CGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGR 203 (222)
T ss_dssp HTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred HHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCe
Confidence 799999999988744 4558999999 8877654 445 99999988743
No 382
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.47 E-value=0.0034 Score=42.08 Aligned_cols=35 Identities=0% Similarity=-0.247 Sum_probs=26.0
Q ss_pred CCCCCcceecCCCCCCCCCCCccee-eecCCC-chhh-hcccC
Q 030227 121 ISHHSMRISEPPPPGVTHESNGYET-HLNVTN-YDYS-RRVFG 160 (181)
Q Consensus 121 f~~~g~i~~~~~~~~~~~~~kG~gf-~f~~~~-~~~a-~~~~g 160 (181)
|.+||+|..+.++. +||||| +|.+.+ ++.| ..+++
T Consensus 47 F~~fG~V~~v~i~~-----~kg~aFVef~~~~~A~~Ai~~l~~ 84 (112)
T 1x4f_A 47 AEPYGKIKNYILMR-----MKSQAFIEMETREDAMAMVDHCLK 84 (112)
T ss_dssp TTTTSCCSEEEEET-----TTTEEEEECSSHHHHHHHHHHHHH
T ss_pred HHhcCCEEEEEEec-----CCCEEEEEECCHHHHHHHHHHhcc
Confidence 89999999888863 589999 997765 4444 55543
No 383
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.44 E-value=0.045 Score=37.50 Aligned_cols=77 Identities=10% Similarity=0.163 Sum_probs=54.0
Q ss_pred CCeEEEcCCCCcCcHHHHHHHHHhcCCeEE-EEEecC--------CCCC-----CcceEEEEEeCCHHHHHHHHHHhCCC
Q 030227 8 GCNVYIGNLDEKVSERVLYDILIQAGRVVD-LYIPRD--------KETD-----KPKGFAFVEYESEEIADYAIKLFSGI 73 (181)
Q Consensus 8 ~~~l~V~nLp~~~te~~l~~~f~~~G~i~~-~~i~~~--------~~~~-----~~~g~afV~f~~~~~a~~al~~l~g~ 73 (181)
..-|.|=+.|++.. ..+.+.|++||.|.+ ....++ +... ....+-.|.|.+..+|++||. .||.
T Consensus 7 e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGA 84 (132)
T ss_dssp -CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTC
T ss_pred ceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCe
Confidence 45566778887665 456778999999876 222110 0001 134688999999999999999 6998
Q ss_pred eeeCCeEEEEEecC
Q 030227 74 VTLYNRTLRFALSG 87 (181)
Q Consensus 74 ~~i~g~~i~v~~a~ 87 (181)
.++|..|-|.+.+
T Consensus 85 -ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 85 -VFNGVLLGVIPYT 97 (132)
T ss_dssp -EETTEECEEEECC
T ss_pred -EeCcEEEEEEECC
Confidence 8999988887764
No 384
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=95.13 E-value=0.0023 Score=40.14 Aligned_cols=49 Identities=4% Similarity=0.029 Sum_probs=34.9
Q ss_pred CccccCCcc-----------CCCC----C-------cceecCCCCCCCCCCCccee-eecCCCchhh-hcccCccccc
Q 030227 112 VPVPVNGME-----------ISHH----S-------MRISEPPPPGVTHESNGYET-HLNVTNYDYS-RRVFGATLDS 165 (181)
Q Consensus 112 ~~~~~~~~~-----------f~~~----g-------~i~~~~~~~~~~~~~kG~gf-~f~~~~~~~a-~~~~g~~~~~ 165 (181)
..+++.+|| |.++ | .|..+.++.+ +|||| .|.+.+.+.+ ..+||..++.
T Consensus 7 ~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~-----kg~afV~f~~~~~a~~A~~l~g~~~~g 79 (87)
T 2hzc_A 7 RRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD-----KNFAFLEFRSVDETTQAMAFDGIIFQG 79 (87)
T ss_dssp GEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS-----SSEEEEEESSHHHHHHHGGGTTCEETT
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC-----CcEEEEEcCCHHHHHHHHhcCCCEECC
Confidence 356666666 6777 6 7777777654 89999 8877654444 8888888764
No 385
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.08 E-value=0.0038 Score=39.94 Aligned_cols=50 Identities=8% Similarity=0.052 Sum_probs=38.1
Q ss_pred CccccCCcc-----------CCCCCcceecC-CCCC-CCCCCCccee-eecCCC-chhh-hcccCccccc
Q 030227 112 VPVPVNGME-----------ISHHSMRISEP-PPPG-VTHESNGYET-HLNVTN-YDYS-RRVFGATLDS 165 (181)
Q Consensus 112 ~~~~~~~~~-----------f~~~g~i~~~~-~~~~-~~~~~kG~gf-~f~~~~-~~~a-~~~~g~~~~~ 165 (181)
..+++.+|| |.++|.|..++ ++.+ .++. || .|.+.+ ++.| ..+||..++.
T Consensus 16 ~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~----afV~f~~~~~a~~Ai~~l~g~~~~g 81 (96)
T 2e44_A 16 RKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAV----VNVTYSSKDQARQALDKLNGFQLEN 81 (96)
T ss_dssp CCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEE----EEEEESSHHHHHHHHHHHTTCBCSS
T ss_pred CEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCE----EEEEECCHHHHHHHHHHhCCCEECC
Confidence 578888888 78999999994 7877 4443 99 887766 4445 7899998873
No 386
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=94.76 E-value=0.0059 Score=39.20 Aligned_cols=37 Identities=5% Similarity=-0.170 Sum_probs=29.0
Q ss_pred CCCCCcceecCCCCCCCCCCCccee-eecCCCch-hh-hcccCcccc
Q 030227 121 ISHHSMRISEPPPPGVTHESNGYET-HLNVTNYD-YS-RRVFGATLD 164 (181)
Q Consensus 121 f~~~g~i~~~~~~~~~~~~~kG~gf-~f~~~~~~-~a-~~~~g~~~~ 164 (181)
|+++|.|..+.++ +|||| .|.+.+.+ .| ..++|..+.
T Consensus 32 F~~~G~v~~v~i~-------~g~afV~f~~~~~A~~A~~~l~g~~~~ 71 (96)
T 2kvi_A 32 FSPYGHIMQINIK-------NAFGFIQFDNPQSVRDAIECESQEMNF 71 (96)
T ss_dssp HTTTCCCCEEEEE-------TTEEEEEESCHHHHHHHHHHHTCSSCB
T ss_pred HHhcCCEEEEEEe-------CCEEEEEECCHHHHHHHHHHcCCCeeC
Confidence 7899999888884 89999 88766544 44 778888886
No 387
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=93.32 E-value=0.0092 Score=45.37 Aligned_cols=38 Identities=11% Similarity=-0.010 Sum_probs=31.0
Q ss_pred CCCCCcceecCCCCCCCCCCCccee-eecCCCc-hhh-hcccCccc
Q 030227 121 ISHHSMRISEPPPPGVTHESNGYET-HLNVTNY-DYS-RRVFGATL 163 (181)
Q Consensus 121 f~~~g~i~~~~~~~~~~~~~kG~gf-~f~~~~~-~~a-~~~~g~~~ 163 (181)
|++||+|..++++. ++|||| .|.+.+. +.| ..|+|..|
T Consensus 164 F~~fG~I~~v~v~~-----~kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 164 FSRLGDIDRIRYVE-----SKNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp HHTTSCEEEEEEEG-----GGTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred HHccCCEEEEEEEC-----CCCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 78999999998874 599999 8877654 445 88999998
No 388
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=92.74 E-value=0.29 Score=41.13 Aligned_cols=55 Identities=16% Similarity=0.186 Sum_probs=45.4
Q ss_pred CeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCC
Q 030227 9 CNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSG 72 (181)
Q Consensus 9 ~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g 72 (181)
..++|+ +|..|...+|.++|+.||. ..|+++.+ ..|||.|.+.+.|..+++.++.
T Consensus 441 ~vl~v~-f~~~~~~~~i~~~fs~fg~-v~V~widd-------t~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 441 HVLHVT-FPKEWKTSDLYQLFSAFGN-IQISWIDD-------TSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GEEEEE-CCTTCCHHHHHHHGGGGCC-CEEEECSS-------SEEEEECSCHHHHHHHHHHHTT
T ss_pred cEEEEe-CCCCCCHHHHHHHHHhcCC-EEEEEEcC-------CeEEEEECCHHHHHHHHHHHHh
Confidence 345555 9999999999999999994 56777655 3799999999999999998854
No 389
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.24 E-value=0.031 Score=35.84 Aligned_cols=38 Identities=8% Similarity=-0.156 Sum_probs=31.3
Q ss_pred CCCCCcceecCCCCCCCCCCCccee-eecCCCchhh-hcccCccccc
Q 030227 121 ISHHSMRISEPPPPGVTHESNGYET-HLNVTNYDYS-RRVFGATLDS 165 (181)
Q Consensus 121 f~~~g~i~~~~~~~~~~~~~kG~gf-~f~~~~~~~a-~~~~g~~~~~ 165 (181)
|.+||++..++++.|. +| .|.+.+.+.| .+|||..+..
T Consensus 36 F~~~G~Vi~vr~~~d~-------~fVtF~d~~sAlaAi~mnG~~v~G 75 (91)
T 2dnr_A 36 FASFGEVILIRFVEDK-------MWVTFLEGSSALNVLSLNGKELLN 75 (91)
T ss_dssp HHTTCCEEEEEECSSS-------EEEEESSHHHHHHGGGGTTCEETT
T ss_pred HHhCCCeEEEEEecCC-------EEEEECChHHHHHHHhcCCeEeCC
Confidence 8999999999999753 89 9987776666 6699998874
No 390
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=85.84 E-value=0.063 Score=34.65 Aligned_cols=39 Identities=10% Similarity=-0.011 Sum_probs=31.4
Q ss_pred CCCCCcceecCCCCCCCCCCCccee-eecCCCchhh-hcccCcccccC
Q 030227 121 ISHHSMRISEPPPPGVTHESNGYET-HLNVTNYDYS-RRVFGATLDSI 166 (181)
Q Consensus 121 f~~~g~i~~~~~~~~~~~~~kG~gf-~f~~~~~~~a-~~~~g~~~~~~ 166 (181)
|.+||++..+++..|. +| .|.+.+.+.+ -++||..+...
T Consensus 45 F~~~G~Vilvr~v~d~-------~fVtF~d~~sAl~AI~ldG~~v~Gr 85 (95)
T 1ufw_A 45 LGSYGTIVLVRINQGQ-------MLVTFADSHSALSVLDVDGMKVKGR 85 (95)
T ss_dssp HHHHSCCSEEEEETTE-------EEEECSCSHHHHHHHHGGGSEETTE
T ss_pred HHHCCCEEEEEEecCc-------EEEEEcChHHHHHHHhcCCeeeCCe
Confidence 7899999999999775 99 9977776655 55999988743
No 391
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=71.97 E-value=1.8 Score=29.01 Aligned_cols=40 Identities=10% Similarity=-0.106 Sum_probs=29.9
Q ss_pred CCCCCcceecCCCCCCCCCCCccee-eecC--CCchhh-hccc--Cccccc
Q 030227 121 ISHHSMRISEPPPPGVTHESNGYET-HLNV--TNYDYS-RRVF--GATLDS 165 (181)
Q Consensus 121 f~~~g~i~~~~~~~~~~~~~kG~gf-~f~~--~~~~~a-~~~~--g~~~~~ 165 (181)
|+++|+|..|.+..+.. .|| .|.+ .+++.| +++| |..|+.
T Consensus 40 F~~~G~V~~Vd~~~g~~-----tgfVrf~~~~~~A~~av~~ln~~~~~i~g 85 (121)
T 1owx_A 40 FSNHGEIKWIDFVRGAK-----EGIILFKEKAKEALGKAKDANNGNLQLRN 85 (121)
T ss_dssp TCSSCCEEEEECCTTCS-----EEEEEESSCHHHHHHHHHHTTTSCBCTTS
T ss_pred HHhcCCEEEEEEecCCC-----EEEEEECCChHHHHHHHHHhhcCCcEEeC
Confidence 89999999999998843 499 9988 466666 7774 445543
No 392
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=66.84 E-value=17 Score=21.47 Aligned_cols=68 Identities=12% Similarity=0.189 Sum_probs=39.7
Q ss_pred eEEEc-CCCCcCcHHHHHHHHHhcC-----CeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEEEE
Q 030227 10 NVYIG-NLDEKVSERVLYDILIQAG-----RVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRF 83 (181)
Q Consensus 10 ~l~V~-nLp~~~te~~l~~~f~~~G-----~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i~v 83 (181)
++||. +--..+...+|..++..-+ .|-.+.+.. .|.||+... ..+..+++.|++. .+.|+.+++
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d--------~~s~v~v~~-~~~~~~~~~l~~~-~i~g~~~~v 71 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMD--------NASYVEILN-GKGPHVLKVMKNT-TVKGKQLKV 71 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECS--------SCEEEEECT-TCHHHHHHHHTTC-CC---CCCE
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeC--------CcEEEEECH-HHHHHHHHHhccc-cCcCceEEE
Confidence 45553 2234555567776666543 445566643 378998865 4577888889987 889998888
Q ss_pred EecC
Q 030227 84 ALSG 87 (181)
Q Consensus 84 ~~a~ 87 (181)
..+.
T Consensus 72 ~~~~ 75 (76)
T 2g0c_A 72 NKAN 75 (76)
T ss_dssp EECC
T ss_pred EECC
Confidence 7653
No 393
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=29.99 E-value=1.1e+02 Score=19.58 Aligned_cols=64 Identities=16% Similarity=0.167 Sum_probs=45.3
Q ss_pred CCCCcCcHHHHHHHHH-hcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeeCCeEEEEEecCC
Q 030227 15 NLDEKVSERVLYDILI-QAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFALSGQ 88 (181)
Q Consensus 15 nLp~~~te~~l~~~f~-~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~i~g~~i~v~~a~~ 88 (181)
.++..+.-++|..... .||.-..++...+ -..|-..+.++..+||+.|+.. -.-+.|+|-...+
T Consensus 23 ~f~RPv~f~eL~~Kv~~~fGq~ldL~y~n~--------EllIpl~sQeDLDkaIellDrs--s~~kSLrIlL~~~ 87 (103)
T 2cu1_A 23 QFPRPVKLEDLRSKAKIAFGQSMDLHYTNN--------ELVIPLTTQDDLDKAVELLDRS--IHMKSLKILLVIN 87 (103)
T ss_dssp EEESSCCHHHHHHHHHHHHSSCEEEEECSS--------SSCEECCSHHHHHHHHHHHHHC--SSCCSEEEEEEEC
T ss_pred eccCCccHHHHHHHHHHHhCCeeeEEEecc--------eEEEeccCHHHHHHHHHHHccC--CcccceEEEEecC
Confidence 4567777788876664 6999888877632 3578899999999999988864 3334445544433
No 394
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=28.50 E-value=59 Score=24.53 Aligned_cols=31 Identities=19% Similarity=0.364 Sum_probs=24.7
Q ss_pred CeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEE
Q 030227 9 CNVYIGNLDEKVSERVLYDILIQAGRVVDLYI 40 (181)
Q Consensus 9 ~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i 40 (181)
.-+.|+|||+.++...|..++.. ..+....+
T Consensus 111 ~~~iv~NlPy~iss~il~~ll~~-~~~~~~~l 141 (271)
T 3fut_A 111 GSLLVANLPYHIATPLVTRLLKT-GRFARLVF 141 (271)
T ss_dssp TEEEEEEECSSCCHHHHHHHHHH-CCEEEEEE
T ss_pred ccEEEecCcccccHHHHHHHhcC-CCCCEEEE
Confidence 46789999999999999999987 65555443
No 395
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=26.95 E-value=37 Score=25.79 Aligned_cols=33 Identities=27% Similarity=0.326 Sum_probs=25.5
Q ss_pred CeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEe
Q 030227 9 CNVYIGNLDEKVSERVLYDILIQAGRVVDLYIP 41 (181)
Q Consensus 9 ~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~ 41 (181)
..+.|+|||+.++...|..++.....+..+.++
T Consensus 115 ~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~m 147 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLFHLMSFAPVVIDQHFM 147 (279)
T ss_dssp CEEEEEECCHHHHHHHHHHHGGGGGGEEEEEEE
T ss_pred ceEEEEccCccccHHHHHHHHhccCCccEEEEE
Confidence 457899999999999999999765555555443
No 396
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=26.39 E-value=65 Score=20.71 Aligned_cols=34 Identities=21% Similarity=0.334 Sum_probs=26.5
Q ss_pred CeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCC
Q 030227 34 RVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSG 72 (181)
Q Consensus 34 ~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g 72 (181)
.|.++.... ..+||-|||=.+......|++.+.+
T Consensus 40 ~I~Si~~~~-----~lkGyIyVEA~~~~~V~~ai~gi~~ 73 (106)
T 3h7h_B 40 QIKSVVAPE-----HVKGYIYVEAYKQTHVKQAIEGVGN 73 (106)
T ss_dssp CCCEEEECT-----TCCSEEEEEESSHHHHHHHHTTCGG
T ss_pred ceEEEEecC-----CCceEEEEEeCCHHHHHHHHhcccc
Confidence 466665532 3689999999999999999887665
No 397
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=26.23 E-value=1.3e+02 Score=18.96 Aligned_cols=57 Identities=14% Similarity=0.165 Sum_probs=46.1
Q ss_pred CCCCeEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHh
Q 030227 6 NSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLF 70 (181)
Q Consensus 6 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l 70 (181)
...+-+-|-|+|..+-..++.-.....|.--.|..+. |.|.+.|.+.++...|+..|
T Consensus 10 kqnclikiinipqgtlkaevvlavrhlgyefycdyid--------gqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 10 KQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID--------GQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS--------SCEEEEESSHHHHHHHHHHH
T ss_pred hhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec--------CeeEEEecCChHHHHHHHHH
Confidence 4567778889999999988887777888767776653 56999999999999999765
No 398
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=22.68 E-value=39 Score=25.23 Aligned_cols=32 Identities=22% Similarity=0.322 Sum_probs=24.9
Q ss_pred eEEEcCCCCcCcHHHHHHHHHhcCCeEEEEEe
Q 030227 10 NVYIGNLDEKVSERVLYDILIQAGRVVDLYIP 41 (181)
Q Consensus 10 ~l~V~nLp~~~te~~l~~~f~~~G~i~~~~i~ 41 (181)
-..|+|||+.++...|..++.....+..+.++
T Consensus 98 ~~vv~NlPY~is~~il~~ll~~~~~~~~~~lm 129 (255)
T 3tqs_A 98 LRVVGNLPYNISTPLLFHLFSQIHCIEDMHFM 129 (255)
T ss_dssp EEEEEECCHHHHHHHHHHHHHTGGGEEEEEEE
T ss_pred eEEEecCCcccCHHHHHHHHhCCCChheEEEE
Confidence 44899999999999999999876655554443
No 399
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=20.14 E-value=1.6e+02 Score=18.05 Aligned_cols=35 Identities=23% Similarity=0.310 Sum_probs=26.5
Q ss_pred CeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHhCCC
Q 030227 34 RVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGI 73 (181)
Q Consensus 34 ~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~ 73 (181)
++.++.++. ..+||-||++...++...+++...+.
T Consensus 39 ~i~~v~vP~-----~fPGYVfVe~~~~~~~~~~I~~t~gV 73 (92)
T 3lpe_A 39 DVYSILASE-----SLKGYVLVEAETKGDVEELIKGMPRV 73 (92)
T ss_dssp CEEEEEECT-----TSTTEEEEEESSHHHHHHHHTTCTTE
T ss_pred cEEEEEEec-----ccCCEEEEEEecchhHHHHHHCCCCc
Confidence 455665543 38899999999988888888877664
Done!