BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030228
(181 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FK7|A Chain A, Crystal Structure Of Certhrax Catalytic Domain
Length = 229
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 29/46 (63%), Gaps = 3/46 (6%)
Query: 51 MGGDLEPLSLRELQYLEQQI---DTSLKRLRNRKNQLTHESISDLQ 93
+GGDL+ S + L+ +E QI D +L++ + +N + + +S+LQ
Sbjct: 62 IGGDLDKKSKKALEKIENQIKNLDAALQKSKITENLIVYRRVSELQ 107
>pdb|4FXQ|A Chain A, Full-Length Certhrax Toxin From Bacillus Cereus In Complex
With Inhibitor P6
pdb|4FXQ|B Chain B, Full-Length Certhrax Toxin From Bacillus Cereus In Complex
With Inhibitor P6
pdb|4GF1|A Chain A, Crystal Structure Of Certhrax
pdb|4GF1|B Chain B, Crystal Structure Of Certhrax
Length = 460
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 29/46 (63%), Gaps = 3/46 (6%)
Query: 51 MGGDLEPLSLRELQYLEQQI---DTSLKRLRNRKNQLTHESISDLQ 93
+GGDL+ S + L+ +E QI D +L++ + +N + + +S+LQ
Sbjct: 285 IGGDLDKKSKKALEKIENQIKNLDAALQKSKITENLIVYRRVSELQ 330
>pdb|3G79|A Chain A, Crystal Structure Of Ndp-N-Acetyl-D-Galactosaminuronic
Acid Dehydrogenase From Methanosarcina Mazei Go1
pdb|3G79|B Chain B, Crystal Structure Of Ndp-N-Acetyl-D-Galactosaminuronic
Acid Dehydrogenase From Methanosarcina Mazei Go1
Length = 478
Score = 27.7 bits (60), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 24/43 (55%)
Query: 31 LEYPNLKSRIEVLEKNIRNFMGGDLEPLSLRELQYLEQQIDTS 73
L+YP I VL + + +FM + L++ L+ L +++D S
Sbjct: 312 LDYPEGADSIYVLARKVNDFMPAHMYNLTVAALERLGKKMDGS 354
>pdb|3DPG|A Chain A, Sgrai With Noncognate Dna Bound
pdb|3DPG|B Chain B, Sgrai With Noncognate Dna Bound
pdb|3DVO|A Chain A, Sgrai With Cognate Dna And Calcium Bound
pdb|3DVO|B Chain B, Sgrai With Cognate Dna And Calcium Bound
pdb|3DVO|C Chain C, Sgrai With Cognate Dna And Calcium Bound
pdb|3DVO|D Chain D, Sgrai With Cognate Dna And Calcium Bound
pdb|3DW9|A Chain A, Sgrai With Cognate Dna And Manganese Bound
pdb|3DW9|B Chain B, Sgrai With Cognate Dna And Manganese Bound
pdb|3MQ6|A Chain A, Domain Swapped Sgrai With Dna And Calcium Bound
pdb|3MQ6|B Chain B, Domain Swapped Sgrai With Dna And Calcium Bound
pdb|3MQ6|C Chain C, Domain Swapped Sgrai With Dna And Calcium Bound
pdb|3MQ6|D Chain D, Domain Swapped Sgrai With Dna And Calcium Bound
pdb|3MQ6|E Chain E, Domain Swapped Sgrai With Dna And Calcium Bound
pdb|3MQ6|F Chain F, Domain Swapped Sgrai With Dna And Calcium Bound
pdb|3MQ6|G Chain G, Domain Swapped Sgrai With Dna And Calcium Bound
pdb|3MQ6|H Chain H, Domain Swapped Sgrai With Dna And Calcium Bound
pdb|3MQY|A Chain A, Sgrai With Cleaved Dna And Magnesium Bound
pdb|3MQY|B Chain B, Sgrai With Cleaved Dna And Magnesium Bound
pdb|3N78|A Chain A, Sgrai Bound To Secondary Site Dna And Mg(Ii)
pdb|3N78|B Chain B, Sgrai Bound To Secondary Site Dna And Mg(Ii)
pdb|3N7B|A Chain A, Sgrai Bound To Secondary Site Dna And Ca(Ii)
pdb|3N7B|B Chain B, Sgrai Bound To Secondary Site Dna And Ca(Ii)
Length = 338
Score = 27.7 bits (60), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 30/78 (38%), Gaps = 6/78 (7%)
Query: 87 ESISDLQKRERALQDQNNMLAXXXXXXXXXXXXQQNQMAQNSSPLMPTFPSLTIGGNIQV 146
E+ +L ER +QD N A QQN +A ++P F S I G
Sbjct: 7 EATRNLATTERCIQDIRN--APVRNRSTQFQLAQQNMLAYTFGEVIPGFASAGING---- 60
Query: 147 MMRGSVIDEPDENQTRQN 164
M VI P EN +
Sbjct: 61 MDYRDVIGRPVENAVTEG 78
>pdb|2Y0I|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Tankyrase-2
(Tnks2) Fragment Peptide (21-Mer)
pdb|2YC0|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With
R-2-Hydroxyglutarate
pdb|2YDE|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With
S-2-Hydroxyglutarate
pdb|4AI8|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Daminozide
Length = 352
Score = 27.3 bits (59), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 8/69 (11%)
Query: 30 SLEYPNLKSRIEVLEKNIRNFMGGDLEPLSL---RELQYLEQQIDT--SLKRLRNRKNQL 84
+L YP LK +E L++NI N GD S + L Y E+++ + K NR+
Sbjct: 71 NLVYPALKWDLEYLQENIGN---GDFSVYSASTHKFLYYDEKKMANFQNFKPRSNREEMK 127
Query: 85 THESISDLQ 93
HE + LQ
Sbjct: 128 FHEFVEKLQ 136
>pdb|3D8C|A Chain A, Factor Inhibiting Hif-1 Alpha D201g Mutant In Complex With
Zn(Ii), Alpha-Ketoglutarate And Hif-1 Alpha 19mer
Length = 349
Score = 27.3 bits (59), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 8/69 (11%)
Query: 30 SLEYPNLKSRIEVLEKNIRNFMGGDLEPLSL---RELQYLEQQIDT--SLKRLRNRKNQL 84
+L YP LK +E L++NI N GD S + L Y E+++ + K NR+
Sbjct: 68 NLVYPALKWDLEYLQENIGN---GDFSVYSASTHKFLYYDEKKMANFQNFKPRSNREEMK 124
Query: 85 THESISDLQ 93
HE + LQ
Sbjct: 125 FHEFVEKLQ 133
>pdb|2ILM|A Chain A, Factor Inhibiting Hif-1 Alpha D201a Mutant In Complex With
Fe(ii), Alpha-ketoglutarate And Hif-1 Alpha 35mer
Length = 349
Score = 27.3 bits (59), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 8/69 (11%)
Query: 30 SLEYPNLKSRIEVLEKNIRNFMGGDLEPLSL---RELQYLEQQIDT--SLKRLRNRKNQL 84
+L YP LK +E L++NI N GD S + L Y E+++ + K NR+
Sbjct: 68 NLVYPALKWDLEYLQENIGN---GDFSVYSASTHKFLYYDEKKMANFQNFKPRSNREEMK 124
Query: 85 THESISDLQ 93
HE + LQ
Sbjct: 125 FHEFVEKLQ 133
>pdb|2XUM|A Chain A, Factor Inhibiting Hif (Fih) Q239h Mutant In Complex With
Zn(Ii), Nog And Asp-Substrate Peptide (20-Mer)
Length = 349
Score = 27.3 bits (59), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 8/69 (11%)
Query: 30 SLEYPNLKSRIEVLEKNIRNFMGGDLEPLSL---RELQYLEQQIDT--SLKRLRNRKNQL 84
+L YP LK +E L++NI N GD S + L Y E+++ + K NR+
Sbjct: 68 NLVYPALKWDLEYLQENIGN---GDFSVYSASTHKFLYYDEKKMANFQNFKPRSNREEMK 124
Query: 85 THESISDLQ 93
HE + LQ
Sbjct: 125 FHEFVEKLQ 133
>pdb|1H2K|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Hif-1 Alpha
Fragment Peptide
pdb|1H2L|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Hif-1 Alpha
Fragment Peptide
pdb|1H2M|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Hif-1 Alpha
Fragment Peptide
pdb|1H2N|A Chain A, Factor Inhibiting Hif-1 Alpha
pdb|1YCI|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With
N-(Carboxycarbonyl)-D- Phenylalanine
pdb|2CGN|A Chain A, Factor Inhibiting Hif-1 Alpha With Succinate
pdb|2CGO|A Chain A, Factor Inhibiting Hif-1 Alpha With Fumarate
pdb|2W0X|A Chain A, Factor Inhibiting Hif-1 Alpha With Pyridine 2,4
Dicarboxylic Acid
pdb|2WA3|A Chain A, Factor Inhibiting Hif-1 Alpha With 2-(3-Hydroxyphenyl)-2-
Oxoacetic Acid
pdb|2WA4|A Chain A, Factor Inhibiting Hif-1 Alpha With N,3-Dihydroxybenzamide
pdb|3P3N|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Notch 1
Fragment Mouse Notch (1930-1949) Peptide
pdb|3P3P|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Notch 1
Fragment Mouse Notch (1997-2016) Peptide
pdb|3OD4|A Chain A, Crystal Structure Of Factor Inhibiting Hif-1 Alpha
Complexed With Inhibitor
pdb|4B7E|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Consensus
Ankyrin Repeat Domain-leu Peptide (20-mer)
pdb|4B7K|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Consensus
Ankyrin Repeat Domain-ser Peptide (20-mer)
Length = 349
Score = 27.3 bits (59), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 8/69 (11%)
Query: 30 SLEYPNLKSRIEVLEKNIRNFMGGDLEPLSL---RELQYLEQQIDT--SLKRLRNRKNQL 84
+L YP LK +E L++NI N GD S + L Y E+++ + K NR+
Sbjct: 68 NLVYPALKWDLEYLQENIGN---GDFSVYSASTHKFLYYDEKKMANFQNFKPRSNREEMK 124
Query: 85 THESISDLQ 93
HE + LQ
Sbjct: 125 FHEFVEKLQ 133
>pdb|1MZE|A Chain A, Human Factor Inhibiting Hif (Fih1)
pdb|1MZF|A Chain A, Human Factor Inhibiting Hif (Fih1) In Complex With
2-Oxoglutarate
Length = 351
Score = 26.9 bits (58), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 8/69 (11%)
Query: 30 SLEYPNLKSRIEVLEKNIRNFMGGDLEPLSL---RELQYLEQQIDT--SLKRLRNRKNQL 84
+L YP LK +E L++NI N GD S + L Y E+++ + K NR+
Sbjct: 70 NLVYPALKWDLEYLQENIGN---GDFSVYSASTHKFLYYDEKKMANFQNFKPRSNREEMK 126
Query: 85 THESISDLQ 93
HE + LQ
Sbjct: 127 FHEFVEKLQ 135
>pdb|3KCX|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Clioquinol
pdb|3KCY|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With
8-Hydroxyquino
Length = 335
Score = 26.9 bits (58), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 8/69 (11%)
Query: 30 SLEYPNLKSRIEVLEKNIRNFMGGDLEPLSL---RELQYLEQQIDT--SLKRLRNRKNQL 84
+L YP LK +E L++NI N GD S + L Y E+++ + K NR+
Sbjct: 54 NLVYPALKWDLEYLQENIGN---GDFSVYSASTHKFLYYDEKKMANFQNFKPRSNREEMK 110
Query: 85 THESISDLQ 93
HE + LQ
Sbjct: 111 FHEFVEKLQ 119
>pdb|1IZ3|A Chain A, Dimeric Structure Of Fih (Factor Inhibiting Hif)
Length = 349
Score = 26.9 bits (58), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 8/69 (11%)
Query: 30 SLEYPNLKSRIEVLEKNIRNFMGGDLE--PLSLRELQYLEQQIDTSLKRLR---NRKNQL 84
+L YP LK +E L++NI N GD S + Y +++ + + + NR+
Sbjct: 68 NLVYPALKWDLEYLQENIGN---GDFSVYSASTHKFLYYDEKKXANFQNFKPRSNREEXK 124
Query: 85 THESISDLQ 93
HE + LQ
Sbjct: 125 FHEFVEKLQ 133
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.129 0.371
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,608,812
Number of Sequences: 62578
Number of extensions: 156204
Number of successful extensions: 414
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 413
Number of HSP's gapped (non-prelim): 16
length of query: 181
length of database: 14,973,337
effective HSP length: 93
effective length of query: 88
effective length of database: 9,153,583
effective search space: 805515304
effective search space used: 805515304
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)