Query 030228
Match_columns 181
No_of_seqs 224 out of 1249
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 10:31:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030228.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030228hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01486 K-box: K-box region; 99.9 5.3E-24 1.2E-28 157.2 11.2 88 25-112 13-100 (100)
2 KOG0014 MADS box transcription 97.6 1.4E-05 3E-10 64.4 0.2 74 29-102 112-190 (195)
3 PF06005 DUF904: Protein of un 95.4 0.28 6.1E-06 34.3 9.2 52 58-114 1-52 (72)
4 COG3074 Uncharacterized protei 92.4 2.7 5.9E-05 29.5 9.2 52 58-114 1-52 (79)
5 PRK15422 septal ring assembly 91.5 3.2 6.9E-05 29.6 9.0 45 58-107 1-45 (79)
6 cd07429 Cby_like Chibby, a nuc 87.1 1.1 2.4E-05 33.7 4.2 27 87-113 72-98 (108)
7 PF06698 DUF1192: Protein of u 85.7 1.4 3.1E-05 29.7 3.8 30 49-78 12-41 (59)
8 PF08317 Spc7: Spc7 kinetochor 84.2 28 0.00061 30.5 12.4 64 54-117 202-267 (325)
9 PF01166 TSC22: TSC-22/dip/bun 82.6 3.5 7.5E-05 27.8 4.5 27 83-109 17-43 (59)
10 smart00787 Spc7 Spc7 kinetocho 82.5 22 0.00048 31.3 10.9 86 33-118 174-263 (312)
11 COG2433 Uncharacterized conser 81.1 24 0.00051 34.2 11.1 84 30-115 421-509 (652)
12 PF06156 DUF972: Protein of un 78.7 20 0.00043 26.8 8.0 39 61-111 8-46 (107)
13 PRK10884 SH3 domain-containing 78.4 36 0.00079 28.2 10.3 20 32-51 94-113 (206)
14 PRK13169 DNA replication intia 77.2 22 0.00048 26.8 7.9 49 60-113 7-55 (110)
15 PF07926 TPR_MLP1_2: TPR/MLP1/ 74.5 35 0.00077 25.9 10.5 30 83-112 101-130 (132)
16 PF07106 TBPIP: Tat binding pr 72.7 19 0.00041 28.4 7.0 51 30-81 115-165 (169)
17 smart00338 BRLZ basic region l 71.8 26 0.00056 23.2 6.8 41 73-117 16-56 (65)
18 PRK10884 SH3 domain-containing 71.1 46 0.00099 27.6 9.2 10 35-44 90-99 (206)
19 PF13758 Prefoldin_3: Prefoldi 69.8 12 0.00027 27.7 4.9 18 26-43 7-24 (99)
20 smart00030 CLb CLUSTERIN Beta 69.0 39 0.00084 28.2 8.1 72 53-125 7-89 (206)
21 TIGR02449 conserved hypothetic 68.7 35 0.00076 23.4 8.0 52 62-113 1-54 (65)
22 KOG1962 B-cell receptor-associ 66.7 71 0.0015 26.9 9.4 74 37-111 133-210 (216)
23 TIGR02894 DNA_bind_RsfA transc 66.2 68 0.0015 25.8 12.0 61 55-115 77-139 (161)
24 PF06156 DUF972: Protein of un 65.8 54 0.0012 24.5 8.1 24 87-110 8-31 (107)
25 PF05529 Bap31: B-cell recepto 65.4 55 0.0012 26.2 8.4 55 60-114 124-188 (192)
26 PF15619 Lebercilin: Ciliary p 65.2 56 0.0012 26.8 8.5 28 88-115 165-192 (194)
27 PF01093 Clusterin: Clusterin; 64.8 40 0.00086 31.3 8.2 72 53-125 1-83 (436)
28 TIGR02338 gimC_beta prefoldin, 64.8 31 0.00068 25.4 6.3 45 66-111 61-105 (110)
29 KOG4797 Transcriptional regula 64.4 36 0.00079 25.8 6.5 42 65-109 45-89 (123)
30 PF00170 bZIP_1: bZIP transcri 62.4 42 0.00091 22.1 7.0 39 73-115 16-54 (64)
31 PF14645 Chibby: Chibby family 61.9 14 0.00031 28.0 4.0 25 87-111 71-95 (116)
32 PF10504 DUF2452: Protein of u 61.5 58 0.0013 26.2 7.6 41 59-99 28-71 (159)
33 PF06005 DUF904: Protein of un 59.1 58 0.0012 22.6 6.8 38 79-116 10-47 (72)
34 PF09789 DUF2353: Uncharacteri 57.8 1.1E+02 0.0024 27.2 9.5 75 33-112 32-111 (319)
35 PF07716 bZIP_2: Basic region 56.7 50 0.0011 21.1 6.9 39 72-114 14-52 (54)
36 PRK11637 AmiB activator; Provi 55.8 1.6E+02 0.0034 26.6 12.0 59 31-98 54-114 (428)
37 KOG4797 Transcriptional regula 55.6 24 0.00052 26.8 4.2 30 81-110 68-97 (123)
38 KOG0971 Microtubule-associated 52.1 2.8E+02 0.0061 28.6 11.9 51 27-78 328-388 (1243)
39 PF03980 Nnf1: Nnf1 ; InterPr 52.0 59 0.0013 23.7 5.9 38 77-114 70-107 (109)
40 PF04977 DivIC: Septum formati 50.8 64 0.0014 21.5 5.6 30 84-113 21-50 (80)
41 KOG0963 Transcription factor/C 50.7 1.6E+02 0.0035 28.6 9.8 85 31-115 121-210 (629)
42 PRK00888 ftsB cell division pr 50.7 59 0.0013 24.0 5.7 34 82-115 29-62 (105)
43 KOG0804 Cytoplasmic Zn-finger 48.1 85 0.0018 29.4 7.3 50 60-109 360-411 (493)
44 PRK13729 conjugal transfer pil 47.9 72 0.0016 30.0 6.9 42 65-111 80-121 (475)
45 KOG3119 Basic region leucine z 47.7 71 0.0015 27.5 6.5 44 71-118 203-246 (269)
46 PF07888 CALCOCO1: Calcium bin 47.6 2.6E+02 0.0057 26.8 11.3 27 85-111 211-237 (546)
47 KOG2751 Beclin-like protein [S 47.1 1.2E+02 0.0027 28.2 8.2 72 1-87 155-226 (447)
48 PF10211 Ax_dynein_light: Axon 46.6 1.6E+02 0.0034 23.9 9.2 9 3-11 95-103 (189)
49 PF06721 DUF1204: Protein of u 46.4 1.7E+02 0.0038 24.4 8.3 80 30-110 14-100 (228)
50 smart00340 HALZ homeobox assoc 46.0 59 0.0013 20.5 4.2 26 90-115 8-33 (44)
51 PF10018 Med4: Vitamin-D-recep 45.3 1.6E+02 0.0035 23.7 9.3 56 60-117 4-59 (188)
52 PRK11637 AmiB activator; Provi 44.9 2.4E+02 0.0052 25.5 12.0 80 29-117 45-126 (428)
53 KOG0709 CREB/ATF family transc 44.4 26 0.00057 32.7 3.5 58 57-114 233-299 (472)
54 KOG3759 Uncharacterized RUN do 44.0 2.9E+02 0.0063 26.3 10.2 23 53-78 197-219 (621)
55 PF02151 UVR: UvrB/uvrC motif; 43.5 61 0.0013 19.1 4.0 33 62-94 3-35 (36)
56 COG4467 Regulator of replicati 42.9 1.4E+02 0.003 22.7 6.6 40 60-111 7-46 (114)
57 PF04849 HAP1_N: HAP1 N-termin 42.6 44 0.00096 29.6 4.5 54 61-114 97-187 (306)
58 PF04880 NUDE_C: NUDE protein, 42.3 54 0.0012 26.5 4.7 42 63-113 2-43 (166)
59 PRK13169 DNA replication intia 42.3 1.5E+02 0.0032 22.3 8.1 44 73-117 9-52 (110)
60 PLN02320 seryl-tRNA synthetase 42.1 3.1E+02 0.0067 26.0 11.2 80 31-115 67-151 (502)
61 PF04899 MbeD_MobD: MbeD/MobD 39.6 1.3E+02 0.0028 20.9 8.7 49 65-113 3-54 (70)
62 PRK09039 hypothetical protein; 39.2 2.8E+02 0.006 24.6 9.2 47 31-98 137-183 (343)
63 PF08781 DP: Transcription fac 39.0 1.9E+02 0.0042 22.8 7.9 24 61-84 1-24 (142)
64 TIGR02209 ftsL_broad cell divi 39.0 1.1E+02 0.0024 20.9 5.4 33 82-114 26-58 (85)
65 cd00632 Prefoldin_beta Prefold 39.0 1.5E+02 0.0032 21.4 9.7 100 2-113 2-103 (105)
66 PF15397 DUF4618: Domain of un 38.0 2.7E+02 0.0058 24.1 10.1 82 32-114 121-220 (258)
67 COG4026 Uncharacterized protei 37.1 2.7E+02 0.0059 24.0 9.2 59 51-112 96-160 (290)
68 PF12329 TMF_DNA_bd: TATA elem 36.7 1.4E+02 0.0031 20.6 6.2 34 81-114 27-60 (74)
69 PRK15422 septal ring assembly 36.4 1.2E+02 0.0027 21.5 5.2 33 80-112 11-43 (79)
70 PF14662 CCDC155: Coiled-coil 35.6 2.6E+02 0.0056 23.2 12.2 78 28-116 19-96 (193)
71 PF12537 DUF3735: Protein of u 33.3 78 0.0017 21.7 3.8 25 60-84 47-71 (72)
72 PF04508 Pox_A_type_inc: Viral 33.2 56 0.0012 17.9 2.4 16 32-47 2-17 (23)
73 cd04769 HTH_MerR2 Helix-Turn-H 32.6 1.9E+02 0.0042 21.1 6.1 54 57-110 56-109 (116)
74 PHA02109 hypothetical protein 32.6 1.8E+02 0.004 24.1 6.3 29 43-71 173-203 (233)
75 cd01109 HTH_YyaN Helix-Turn-He 32.6 2E+02 0.0042 20.9 6.7 53 57-110 57-109 (113)
76 KOG0930 Guanine nucleotide exc 32.4 93 0.002 27.7 4.9 42 56-106 9-50 (395)
77 PRK09413 IS2 repressor TnpA; R 32.3 1.4E+02 0.003 22.2 5.3 28 84-111 75-102 (121)
78 PF15243 ANAPC15: Anaphase-pro 31.4 59 0.0013 23.8 3.0 22 61-82 28-49 (92)
79 PF07798 DUF1640: Protein of u 31.3 2.7E+02 0.0058 22.1 8.4 54 58-111 44-97 (177)
80 PF09798 LCD1: DNA damage chec 31.1 2.8E+02 0.006 27.3 8.3 52 62-113 5-59 (654)
81 PF04999 FtsL: Cell division p 30.9 1.6E+02 0.0036 20.7 5.3 32 82-113 37-68 (97)
82 COG4467 Regulator of replicati 30.8 1.4E+02 0.0031 22.6 5.0 28 85-112 6-33 (114)
83 cd04787 HTH_HMRTR_unk Helix-Tu 30.7 2.3E+02 0.0051 21.2 6.7 52 58-110 58-109 (133)
84 TIGR01950 SoxR redox-sensitive 29.9 1.7E+02 0.0037 22.6 5.6 54 57-110 57-110 (142)
85 PF11365 DUF3166: Protein of u 29.5 1.6E+02 0.0034 21.7 5.0 28 84-111 12-39 (96)
86 PF08946 Osmo_CC: Osmosensory 29.4 1.5E+02 0.0032 19.0 4.1 24 80-103 19-42 (46)
87 PF04859 DUF641: Plant protein 28.6 2.8E+02 0.0061 21.5 9.0 72 38-110 52-131 (131)
88 smart00338 BRLZ basic region l 27.4 1.8E+02 0.004 19.0 5.3 28 83-110 36-63 (65)
89 PF12718 Tropomyosin_1: Tropom 27.0 3E+02 0.0065 21.3 8.3 21 91-111 112-132 (143)
90 PF15254 CCDC14: Coiled-coil d 26.5 6.9E+02 0.015 25.3 11.7 84 27-115 390-483 (861)
91 PF08112 ATP-synt_E_2: ATP syn 26.2 1.8E+02 0.0038 19.3 4.2 48 3-52 7-55 (56)
92 PRK13923 putative spore coat p 25.8 3.1E+02 0.0067 22.3 6.5 28 86-113 110-137 (170)
93 PHA01750 hypothetical protein 25.6 2.4E+02 0.0051 19.6 6.8 22 88-109 50-71 (75)
94 PF06810 Phage_GP20: Phage min 24.9 3.4E+02 0.0075 21.3 7.6 53 60-114 26-82 (155)
95 PF06937 EURL: EURL protein; 24.9 98 0.0021 27.1 3.7 36 42-77 203-238 (285)
96 TIGR00012 L29 ribosomal protei 24.8 1.3E+02 0.0028 19.4 3.5 28 54-81 1-28 (55)
97 PRK14127 cell division protein 24.2 2.6E+02 0.0057 21.0 5.5 28 88-115 38-65 (109)
98 TIGR03185 DNA_S_dndD DNA sulfu 23.4 6.6E+02 0.014 24.1 11.9 22 31-52 398-419 (650)
99 PF01763 Herpes_UL6: Herpesvir 23.3 3.4E+02 0.0073 26.2 7.2 48 71-118 353-401 (557)
100 PF11853 DUF3373: Protein of u 23.2 73 0.0016 30.1 2.8 29 87-115 31-59 (489)
101 PF04111 APG6: Autophagy prote 23.1 5.1E+02 0.011 22.7 11.6 68 31-112 43-110 (314)
102 cd01106 HTH_TipAL-Mta Helix-Tu 23.1 2.8E+02 0.0061 19.7 6.0 15 57-71 57-71 (103)
103 TIGR02043 ZntR Zn(II)-responsi 22.8 3.3E+02 0.0072 20.4 6.0 53 57-110 58-111 (131)
104 COG0216 PrfA Protein chain rel 22.8 5.8E+02 0.013 23.2 9.6 89 2-106 10-102 (363)
105 PF07889 DUF1664: Protein of u 22.7 3.6E+02 0.0078 20.7 8.4 64 41-113 57-122 (126)
106 PF07106 TBPIP: Tat binding pr 22.7 3.7E+02 0.0081 20.9 7.6 60 53-112 64-134 (169)
107 COG5415 Predicted integral mem 22.0 1.4E+02 0.0031 25.3 4.0 26 61-86 15-43 (251)
108 PF10226 DUF2216: Uncharacteri 21.9 2E+02 0.0044 23.9 4.8 27 66-92 46-74 (195)
109 cd00890 Prefoldin Prefoldin is 21.8 3.2E+02 0.0069 19.8 6.0 44 67-111 82-125 (129)
110 cd01282 HTH_MerR-like_sg3 Heli 21.7 3.2E+02 0.007 19.8 6.1 51 58-109 57-110 (112)
111 PF10186 Atg14: UV radiation r 21.7 4.6E+02 0.01 21.6 10.7 23 30-52 26-48 (302)
112 PF07407 Seadorna_VP6: Seadorn 21.7 3.6E+02 0.0078 24.5 6.6 51 54-118 25-75 (420)
113 PF07558 Shugoshin_N: Shugoshi 21.6 1.3E+02 0.0028 18.9 2.9 32 80-111 14-45 (46)
114 PLN02372 violaxanthin de-epoxi 21.5 6.7E+02 0.015 23.4 10.6 51 33-95 363-418 (455)
115 cd01107 HTH_BmrR Helix-Turn-He 21.5 3.2E+02 0.0069 19.7 6.4 48 57-110 58-105 (108)
116 PRK09514 zntR zinc-responsive 21.5 3.6E+02 0.0079 20.5 6.0 54 57-110 58-111 (140)
117 TIGR02976 phageshock_pspB phag 21.4 1.5E+02 0.0032 20.8 3.5 20 28-47 46-65 (75)
118 PF10168 Nup88: Nuclear pore c 20.9 6.5E+02 0.014 24.9 8.8 11 52-62 624-634 (717)
119 PF04849 HAP1_N: HAP1 N-termin 20.8 5.5E+02 0.012 22.8 7.6 31 85-115 239-269 (306)
120 PRK03947 prefoldin subunit alp 20.7 3.3E+02 0.0071 20.5 5.6 46 67-113 89-134 (140)
121 PF11629 Mst1_SARAH: C termina 20.6 1.5E+02 0.0033 19.2 3.1 24 55-78 5-32 (49)
122 PF14723 SSFA2_C: Sperm-specif 20.5 1.1E+02 0.0023 25.1 2.9 19 61-79 159-177 (179)
123 PF06785 UPF0242: Uncharacteri 20.4 5.9E+02 0.013 23.2 7.7 42 70-112 132-173 (401)
124 PF12128 DUF3584: Protein of u 20.3 6.6E+02 0.014 26.2 9.2 84 27-111 659-742 (1201)
125 PRK10227 DNA-binding transcrip 20.2 4E+02 0.0086 20.3 6.4 53 57-110 57-109 (135)
126 KOG0837 Transcriptional activa 20.1 6E+02 0.013 22.3 7.8 55 59-117 200-257 (279)
No 1
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=99.91 E-value=5.3e-24 Score=157.22 Aligned_cols=88 Identities=47% Similarity=0.708 Sum_probs=85.0
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHhhhhcCCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030228 25 LQGCWSLEYPNLKSRIEVLEKNIRNFMGGDLEPLSLRELQYLEQQIDTSLKRLRNRKNQLTHESISDLQKRERALQDQNN 104 (181)
Q Consensus 25 ~~~~~~~E~~kLk~~ie~Lq~~~R~l~GEdL~~Ls~kELq~LE~qLe~aL~~IRsrK~qlm~e~I~~LqkKe~~L~EeN~ 104 (181)
..+.|..|+++|+.+++.|+..+|||+||||++||++||++||++|+.||++||+||+++|+++|..|++|++.|.++|.
T Consensus 13 ~~e~~~~e~~~L~~~~~~L~~~~R~~~GedL~~Ls~~eL~~LE~~Le~aL~~VR~rK~~~l~~~i~~l~~ke~~l~~en~ 92 (100)
T PF01486_consen 13 QHEELQQEIAKLRKENESLQKELRHLMGEDLESLSLKELQQLEQQLESALKRVRSRKDQLLMEQIEELKKKERELEEENN 92 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 030228 105 MLAKKLKE 112 (181)
Q Consensus 105 ~L~~kl~e 112 (181)
.|+.++.|
T Consensus 93 ~L~~~~~e 100 (100)
T PF01486_consen 93 QLRQKIEE 100 (100)
T ss_pred HHHHHhcC
Confidence 99999864
No 2
>KOG0014 consensus MADS box transcription factor [Transcription]
Probab=97.62 E-value=1.4e-05 Score=64.37 Aligned_cols=74 Identities=34% Similarity=0.364 Sum_probs=61.8
Q ss_pred hhhhHHHHHHHHHHHHHH---hhhhcCCCCCCCCH-HHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q 030228 29 WSLEYPNLKSRIEVLEKN---IRNFMGGDLEPLSL-RELQYLEQQIDTSLKRLRNRKNQLTHESIS-DLQKRERALQDQ 102 (181)
Q Consensus 29 ~~~E~~kLk~~ie~Lq~~---~R~l~GEdL~~Ls~-kELq~LE~qLe~aL~~IRsrK~qlm~e~I~-~LqkKe~~L~Ee 102 (181)
+..+...++..++.|+.. +|+++|++|.++++ .+|..+|.+|+.++..+|..+...+.+++. .++.++..+...
T Consensus 112 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (195)
T KOG0014|consen 112 KKSLESSLKVDPEDLELLELEQRKLTGEDLQSLSSLNELNSLESQLESSLHNSRSSKSKPLSDSNFQVLQEKEKSLEAE 190 (195)
T ss_pred hhhhhhhhhcchhhhhhhHHHHHHHhccccccCCHHHHhcchhhHHHHhhcCCCCCCCcCCcchhhhhhcccchhcccc
Confidence 456667777778877754 99999999999999 999999999999999999999999998887 666666555443
No 3
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=95.40 E-value=0.28 Score=34.30 Aligned_cols=52 Identities=19% Similarity=0.359 Sum_probs=39.8
Q ss_pred CCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030228 58 LSLRELQYLEQQIDTSLKRLRNRKNQLTHESISDLQKRERALQDQNNMLAKKLKEKE 114 (181)
Q Consensus 58 Ls~kELq~LE~qLe~aL~~IRsrK~qlm~e~I~~LqkKe~~L~EeN~~L~~kl~e~~ 114 (181)
+|+.-|.+||.++..|+..|.. +..++.+|+.+-..|.++|..|........
T Consensus 1 M~~E~l~~LE~ki~~aveti~~-----Lq~e~eeLke~n~~L~~e~~~L~~en~~L~ 52 (72)
T PF06005_consen 1 MSLELLEQLEEKIQQAVETIAL-----LQMENEELKEKNNELKEENEELKEENEQLK 52 (72)
T ss_dssp --HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 5788999999999999999854 455778888887777788887777665543
No 4
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.36 E-value=2.7 Score=29.46 Aligned_cols=52 Identities=17% Similarity=0.348 Sum_probs=40.0
Q ss_pred CCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030228 58 LSLRELQYLEQQIDTSLKRLRNRKNQLTHESISDLQKRERALQDQNNMLAKKLKEKE 114 (181)
Q Consensus 58 Ls~kELq~LE~qLe~aL~~IRsrK~qlm~e~I~~LqkKe~~L~EeN~~L~~kl~e~~ 114 (181)
+|+.=|.+||..+..|+.-| .|+.-+|++|+.|-..|..+-..++.......
T Consensus 1 MSlEv~ekLE~KiqqAvdTI-----~LLQmEieELKEknn~l~~e~q~~q~~reaL~ 52 (79)
T COG3074 1 MSLEVFEKLEAKVQQAIDTI-----TLLQMEIEELKEKNNSLSQEVQNAQHQREALE 52 (79)
T ss_pred CchHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHH
Confidence 57788999999999999877 57778889988888777766666655555443
No 5
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=91.55 E-value=3.2 Score=29.60 Aligned_cols=45 Identities=18% Similarity=0.382 Sum_probs=35.0
Q ss_pred CCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030228 58 LSLRELQYLEQQIDTSLKRLRNRKNQLTHESISDLQKRERALQDQNNMLA 107 (181)
Q Consensus 58 Ls~kELq~LE~qLe~aL~~IRsrK~qlm~e~I~~LqkKe~~L~EeN~~L~ 107 (181)
+|+.=|.+||..+..|+.-| .++.-+|++|+.|-..|.+++..++
T Consensus 1 MS~EvleqLE~KIqqAvdtI-----~LLqmEieELKekn~~L~~e~~~~~ 45 (79)
T PRK15422 1 MSLEVFEKLEAKVQQAIDTI-----TLLQMEIEELKEKNNSLSQEVQNAQ 45 (79)
T ss_pred CcHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788999999999999887 4666778888887777777666543
No 6
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=87.08 E-value=1.1 Score=33.73 Aligned_cols=27 Identities=26% Similarity=0.496 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030228 87 ESISDLQKRERALQDQNNMLAKKLKEK 113 (181)
Q Consensus 87 e~I~~LqkKe~~L~EeN~~L~~kl~e~ 113 (181)
.++..|++|.+.|+|||+.|+-|++-.
T Consensus 72 ~e~~rlkkk~~~LeEENNlLklKievL 98 (108)
T cd07429 72 REVLRLKKKNQQLEEENNLLKLKIEVL 98 (108)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567888999999999999998643
No 7
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=85.69 E-value=1.4 Score=29.66 Aligned_cols=30 Identities=30% Similarity=0.427 Sum_probs=21.3
Q ss_pred hhcCCCCCCCCHHHHHHHHHHHHHHhHHHH
Q 030228 49 NFMGGDLEPLSLRELQYLEQQIDTSLKRLR 78 (181)
Q Consensus 49 ~l~GEdL~~Ls~kELq~LE~qLe~aL~~IR 78 (181)
|..|+||+.||+.||..==..|+.=+.++|
T Consensus 12 ~~ig~dLs~lSv~EL~~RIa~L~aEI~R~~ 41 (59)
T PF06698_consen 12 HEIGEDLSLLSVEELEERIALLEAEIARLE 41 (59)
T ss_pred cccCCCchhcCHHHHHHHHHHHHHHHHHHH
Confidence 688999999999999864444444444443
No 8
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=84.19 E-value=28 Score=30.51 Aligned_cols=64 Identities=22% Similarity=0.431 Sum_probs=50.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 030228 54 DLEPLSLRELQYLEQQIDTSLKRLRNRKNQLT--HESISDLQKRERALQDQNNMLAKKLKEKERTL 117 (181)
Q Consensus 54 dL~~Ls~kELq~LE~qLe~aL~~IRsrK~qlm--~e~I~~LqkKe~~L~EeN~~L~~kl~e~~~~~ 117 (181)
+++.+...+|..|-..|...=..|..+|..+- ..++..++.+...+.++...+...|.+.++..
T Consensus 202 e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~ 267 (325)
T PF08317_consen 202 EIESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIR 267 (325)
T ss_pred hhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48889999999999999998888887777653 56777777777777777777777777765544
No 9
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=82.59 E-value=3.5 Score=27.81 Aligned_cols=27 Identities=30% Similarity=0.653 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030228 83 QLTHESISDLQKRERALQDQNNMLAKK 109 (181)
Q Consensus 83 qlm~e~I~~LqkKe~~L~EeN~~L~~k 109 (181)
+.+.++|.+|..+...|+.+|..|+..
T Consensus 17 evLK~~I~eL~~~n~~Le~EN~~Lk~~ 43 (59)
T PF01166_consen 17 EVLKEQIAELEERNSQLEEENNLLKQN 43 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455566666666666666666666543
No 10
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=82.51 E-value=22 Score=31.31 Aligned_cols=86 Identities=22% Similarity=0.425 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHHhhhhcC--CCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Q 030228 33 YPNLKSRIEVLEKNIRNFMG--GDLEPLSLRELQYLEQQIDTSLKRLRNRKNQLT--HESISDLQKRERALQDQNNMLAK 108 (181)
Q Consensus 33 ~~kLk~~ie~Lq~~~R~l~G--EdL~~Ls~kELq~LE~qLe~aL~~IRsrK~qlm--~e~I~~LqkKe~~L~EeN~~L~~ 108 (181)
+..|+.+...|+...+++.- ++++.+...||..+-..|..-...|..++.++. .+++..+..+.....+.-..+..
T Consensus 174 ~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~ 253 (312)
T smart00787 174 KPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNT 253 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555433 577889999999999999998888877776643 46666666676777777777777
Q ss_pred HHHHHHHhHH
Q 030228 109 KLKEKERTLT 118 (181)
Q Consensus 109 kl~e~~~~~~ 118 (181)
.|.+.++...
T Consensus 254 ~I~~ae~~~~ 263 (312)
T smart00787 254 EIAEAEKKLE 263 (312)
T ss_pred HHHHHHHHHH
Confidence 7777665544
No 11
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=81.14 E-value=24 Score=34.16 Aligned_cols=84 Identities=24% Similarity=0.353 Sum_probs=54.1
Q ss_pred hhhHHHHHHHHHHHHHHhhhhcCCCCCCCCHHHHHHHHHHHHHHhHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030228 30 SLEYPNLKSRIEVLEKNIRNFMGGDLEPLSLRELQYLEQQIDTSLKRLR-----NRKNQLTHESISDLQKRERALQDQNN 104 (181)
Q Consensus 30 ~~E~~kLk~~ie~Lq~~~R~l~GEdL~~Ls~kELq~LE~qLe~aL~~IR-----srK~qlm~e~I~~LqkKe~~L~EeN~ 104 (181)
..++.++...++.|+...++|-.+ ++.|- +++..||.+|+..-.+++ .|+-+.+...|..|.++...-...-.
T Consensus 421 ~~~i~~~~~~ve~l~~e~~~L~~~-~ee~k-~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve 498 (652)
T COG2433 421 EKRIKKLEETVERLEEENSELKRE-LEELK-REIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVE 498 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHH-HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555554432 11111 788999999999888877 45566677788888887666666666
Q ss_pred HHHHHHHHHHH
Q 030228 105 MLAKKLKEKER 115 (181)
Q Consensus 105 ~L~~kl~e~~~ 115 (181)
.|..++.+..+
T Consensus 499 ~L~~~l~~l~k 509 (652)
T COG2433 499 ELERKLAELRK 509 (652)
T ss_pred HHHHHHHHHHH
Confidence 77777776653
No 12
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=78.68 E-value=20 Score=26.80 Aligned_cols=39 Identities=31% Similarity=0.411 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030228 61 RELQYLEQQIDTSLKRLRNRKNQLTHESISDLQKRERALQDQNNMLAKKLK 111 (181)
Q Consensus 61 kELq~LE~qLe~aL~~IRsrK~qlm~e~I~~LqkKe~~L~EeN~~L~~kl~ 111 (181)
+.|.+||+||..-+..|. .|++....|.|+|..|+....
T Consensus 8 ~~l~~le~~l~~l~~~~~------------~LK~~~~~l~EEN~~L~~EN~ 46 (107)
T PF06156_consen 8 DRLDQLEQQLGQLLEELE------------ELKKQLQELLEENARLRIENE 46 (107)
T ss_pred HHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHH
Confidence 456677777766555554 444444445555555554433
No 13
>PRK10884 SH3 domain-containing protein; Provisional
Probab=78.40 E-value=36 Score=28.24 Aligned_cols=20 Identities=20% Similarity=0.519 Sum_probs=10.7
Q ss_pred hHHHHHHHHHHHHHHhhhhc
Q 030228 32 EYPNLKSRIEVLEKNIRNFM 51 (181)
Q Consensus 32 E~~kLk~~ie~Lq~~~R~l~ 51 (181)
.+.+|+++++.|+....++-
T Consensus 94 rlp~le~el~~l~~~l~~~~ 113 (206)
T PRK10884 94 RVPDLENQVKTLTDKLNNID 113 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35556666666655444433
No 14
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=77.17 E-value=22 Score=26.80 Aligned_cols=49 Identities=35% Similarity=0.457 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030228 60 LRELQYLEQQIDTSLKRLRNRKNQLTHESISDLQKRERALQDQNNMLAKKLKEK 113 (181)
Q Consensus 60 ~kELq~LE~qLe~aL~~IRsrK~qlm~e~I~~LqkKe~~L~EeN~~L~~kl~e~ 113 (181)
++-|.+||+|+..-+..|..-|.++ .+|-..-..|.-+|.-|+..+.+.
T Consensus 7 fd~l~~le~~l~~l~~el~~LK~~~-----~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 7 FDALDDLEQNLGVLLKELGALKKQL-----AELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567788888887776666555433 334444455566666666666543
No 15
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=74.52 E-value=35 Score=25.91 Aligned_cols=30 Identities=27% Similarity=0.509 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030228 83 QLTHESISDLQKRERALQDQNNMLAKKLKE 112 (181)
Q Consensus 83 qlm~e~I~~LqkKe~~L~EeN~~L~~kl~e 112 (181)
..+..+|++++++...|.++|+.|..+|..
T Consensus 101 ~~le~e~~~~~~r~~dL~~QN~lLh~QlE~ 130 (132)
T PF07926_consen 101 EQLEKELSELEQRIEDLNEQNKLLHDQLES 130 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456788999999999999999999988853
No 16
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=72.73 E-value=19 Score=28.41 Aligned_cols=51 Identities=27% Similarity=0.365 Sum_probs=29.1
Q ss_pred hhhHHHHHHHHHHHHHHhhhhcCCCCCCCCHHHHHHHHHHHHHHhHHHHHHH
Q 030228 30 SLEYPNLKSRIEVLEKNIRNFMGGDLEPLSLRELQYLEQQIDTSLKRLRNRK 81 (181)
Q Consensus 30 ~~E~~kLk~~ie~Lq~~~R~l~GEdL~~Ls~kELq~LE~qLe~aL~~IRsrK 81 (181)
...+..|+.+++.|+..+..|.+ +-...|.+|...++.......+..|.||
T Consensus 115 ~~~i~~l~~e~~~l~~kL~~l~~-~~~~vs~ee~~~~~~~~~~~~k~w~kRK 165 (169)
T PF07106_consen 115 REEIEELEEEIEELEEKLEKLRS-GSKPVSPEEKEKLEKEYKKWRKEWKKRK 165 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555 4444566666666666666666666655
No 17
>smart00338 BRLZ basic region leucin zipper.
Probab=71.79 E-value=26 Score=23.17 Aligned_cols=41 Identities=29% Similarity=0.531 Sum_probs=31.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 030228 73 SLKRLRNRKNQLTHESISDLQKRERALQDQNNMLAKKLKEKERTL 117 (181)
Q Consensus 73 aL~~IRsrK~qlm~e~I~~LqkKe~~L~EeN~~L~~kl~e~~~~~ 117 (181)
|-.+-|.||.+ .|..|..+...|..+|..|..++.......
T Consensus 16 aA~~~R~rKk~----~~~~Le~~~~~L~~en~~L~~~~~~l~~e~ 56 (65)
T smart00338 16 AARRSRERKKA----EIEELERKVEQLEAENERLKKEIERLRREL 56 (65)
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667777765 457889999999999999999987765543
No 18
>PRK10884 SH3 domain-containing protein; Provisional
Probab=71.14 E-value=46 Score=27.64 Aligned_cols=10 Identities=40% Similarity=0.703 Sum_probs=5.1
Q ss_pred HHHHHHHHHH
Q 030228 35 NLKSRIEVLE 44 (181)
Q Consensus 35 kLk~~ie~Lq 44 (181)
.++.++..|+
T Consensus 90 ~~~~rlp~le 99 (206)
T PRK10884 90 SLRTRVPDLE 99 (206)
T ss_pred cHHHHHHHHH
Confidence 3455555555
No 19
>PF13758 Prefoldin_3: Prefoldin subunit
Probab=69.83 E-value=12 Score=27.73 Aligned_cols=18 Identities=44% Similarity=0.737 Sum_probs=15.7
Q ss_pred hhhhhhhHHHHHHHHHHH
Q 030228 26 QGCWSLEYPNLKSRIEVL 43 (181)
Q Consensus 26 ~~~~~~E~~kLk~~ie~L 43 (181)
-+-|..||.-||.+|+.|
T Consensus 7 Wq~w~aEYe~LKEEi~~l 24 (99)
T PF13758_consen 7 WQTWEAEYEGLKEEIEAL 24 (99)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 357999999999999888
No 20
>smart00030 CLb CLUSTERIN Beta chain.
Probab=68.99 E-value=39 Score=28.23 Aligned_cols=72 Identities=18% Similarity=0.294 Sum_probs=44.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--HHHHH
Q 030228 53 GDLEPLSLRELQYLEQQIDTSLKRLRNRKN---------QLTHESISDLQKRERALQDQNNMLAKKLKEKERT--LTEQQ 121 (181)
Q Consensus 53 EdL~~Ls~kELq~LE~qLe~aL~~IRsrK~---------qlm~e~I~~LqkKe~~L~EeN~~L~~kl~e~~~~--~~~~~ 121 (181)
++|..||..-=..+.+++++||+-|..-|+ +-|+..+++.+++-......-+....||.+.+.. .. ..
T Consensus 7 ~~Lk~lS~~G~kyvd~EI~nAl~GvKqMK~~mer~~eeh~~ll~tLe~~kk~KeeAlk~~~e~e~kL~E~~~vCnet-m~ 85 (206)
T smart00030 7 NELQEMSTQGSKYINKEIKNALKGVKQIKTLIEKTNKERKSLLSTLEEAKKKKEEALKDTRESEEKLKESQGVCNET-MM 85 (206)
T ss_pred hhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 455566666667789999999998876554 3455566666554333333444556667665441 22 45
Q ss_pred hhhh
Q 030228 122 NQMA 125 (181)
Q Consensus 122 ~~~~ 125 (181)
+.|+
T Consensus 86 alWe 89 (206)
T smart00030 86 ALWE 89 (206)
T ss_pred HHHH
Confidence 6787
No 21
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=68.69 E-value=35 Score=23.40 Aligned_cols=52 Identities=23% Similarity=0.323 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030228 62 ELQYLEQQIDTSLKRLRN--RKNQLTHESISDLQKRERALQDQNNMLAKKLKEK 113 (181)
Q Consensus 62 ELq~LE~qLe~aL~~IRs--rK~qlm~e~I~~LqkKe~~L~EeN~~L~~kl~e~ 113 (181)
||+.||.+++.=+..... +-|.++..++..++..-..|.+.|..=+.+|+..
T Consensus 1 ~L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEam 54 (65)
T TIGR02449 1 ELQALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAM 54 (65)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578899999887766543 3345666666666666666666666666666543
No 22
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=66.73 E-value=71 Score=26.91 Aligned_cols=74 Identities=19% Similarity=0.264 Sum_probs=39.8
Q ss_pred HHHHHHHHHHhhhhcC--CCCCCCCHHHHHHHHHHHHHHhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030228 37 KSRIEVLEKNIRNFMG--GDLEPLSLRELQYLEQQIDTSLKRLR--NRKNQLTHESISDLQKRERALQDQNNMLAKKLK 111 (181)
Q Consensus 37 k~~ie~Lq~~~R~l~G--EdL~~Ls~kELq~LE~qLe~aL~~IR--srK~qlm~e~I~~LqkKe~~L~EeN~~L~~kl~ 111 (181)
..+.+.++.....-.+ |+.+ -...|+..|+..++.--+..- ..+..-|..+.+.+++.-..|-|+|..|+.+|.
T Consensus 133 ~~~~~~lk~~~~~~~~~~~~~~-~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 133 MKENEALKKQLENSSKLEEEND-KLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred HHHHHHHHHhhhcccchhhhHH-HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence 3345555544444332 2222 234466666666665444332 233334556666666666667777777777664
No 23
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=66.20 E-value=68 Score=25.84 Aligned_cols=61 Identities=21% Similarity=0.290 Sum_probs=44.2
Q ss_pred CCCCCHHHHHHHHHHHHHHhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030228 55 LEPLSLRELQYLEQQIDTSLKRLRN--RKNQLTHESISDLQKRERALQDQNNMLAKKLKEKER 115 (181)
Q Consensus 55 L~~Ls~kELq~LE~qLe~aL~~IRs--rK~qlm~e~I~~LqkKe~~L~EeN~~L~~kl~e~~~ 115 (181)
.++|++++....=++|......... .-++-+.+++..|+.+...|..+|..|.+++...+.
T Consensus 77 ~~~ltl~~vI~fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~e 139 (161)
T TIGR02894 77 AGSLTLQDVISFLQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEE 139 (161)
T ss_pred cccCCHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4779999988877777765333322 234566788888999999999999999888766543
No 24
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=65.84 E-value=54 Score=24.48 Aligned_cols=24 Identities=21% Similarity=0.368 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 030228 87 ESISDLQKRERALQDQNNMLAKKL 110 (181)
Q Consensus 87 e~I~~LqkKe~~L~EeN~~L~~kl 110 (181)
+.|..+..+...+.++-..|+..+
T Consensus 8 ~~l~~le~~l~~l~~~~~~LK~~~ 31 (107)
T PF06156_consen 8 DRLDQLEQQLGQLLEELEELKKQL 31 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444443
No 25
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=65.42 E-value=55 Score=26.24 Aligned_cols=55 Identities=22% Similarity=0.299 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030228 60 LRELQYLEQQIDTSLKRLRNR----------KNQLTHESISDLQKRERALQDQNNMLAKKLKEKE 114 (181)
Q Consensus 60 ~kELq~LE~qLe~aL~~IRsr----------K~qlm~e~I~~LqkKe~~L~EeN~~L~~kl~e~~ 114 (181)
+.+|-.+|..++.+-++..+. +..-..++|++|+++......+...|+++.+...
T Consensus 124 i~~l~~~~~~~~~~~kq~~~~~~~~~~~~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~ 188 (192)
T PF05529_consen 124 IKELIKLEEKLEALKKQAESASEAAEKLLKEENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQ 188 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357777777777666665422 3345567777777777776777777777765543
No 26
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=65.25 E-value=56 Score=26.84 Aligned_cols=28 Identities=39% Similarity=0.521 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030228 88 SISDLQKRERALQDQNNMLAKKLKEKER 115 (181)
Q Consensus 88 ~I~~LqkKe~~L~EeN~~L~~kl~e~~~ 115 (181)
.+.+++.....|+++...|..+|.+.++
T Consensus 165 K~~~~~~~~~~l~~ei~~L~~klkEKer 192 (194)
T PF15619_consen 165 KHKEAQEEVKSLQEEIQRLNQKLKEKER 192 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455555666677777777777766553
No 27
>PF01093 Clusterin: Clusterin; InterPro: IPR000753 Clusterin is a vertebrate glycoprotein [], the exact function of which is not yet clear. Clusterin expression is complex, appearing as different forms in different cell compartments. One set of proteins is directed for secretion, and other clusterin species are expressed in the cytoplasm and nucleus. The secretory form of the clusterin protein (sCLU) is targeted to the ER by an initial leader peptide. This ~60kDa pre-sCLU protein is further glycosylated and proteolytically cleaved into alpha- and beta-subunits, held together by disulphide bonds. External sCLU is an 80kDa protein and may act as a molecular chaperone, scavenging denatured proteins outside cells following specific stress-induced injury such as heat shock. sCLU possesses nonspecific binding activity to hydrophobic domains of various proteins in vitro []. A specific nuclear form of CLU (nCLU) acts as a pro-death signal, inhibiting cell growth and survival. The nCLU protein has two coiled-coil domains, one at its N terminus that is unable to bind Ku70, and a C-terminal coiled-coil domain that is uniquely able to associate with Ku70 and is minimally required for cell death. Clusterin is synthesized as a precursor polypeptide of about 400 amino acids which is post-translationally cleaved to form two subunits of about 200 amino acids each. The two subunits are linked by five disulphide bonds to form an antiparallel ladder-like structure []. In each of the mature subunits the five cysteines that are involved in disulphide bonds are clustered in domains of about 30 amino acids located in the central part of the subunits. This entry represents the clusterin precursor and related proteins.; GO: 0008219 cell death
Probab=64.82 E-value=40 Score=31.30 Aligned_cols=72 Identities=18% Similarity=0.284 Sum_probs=46.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--HHHHH
Q 030228 53 GDLEPLSLRELQYLEQQIDTSLKRLRNRK---------NQLTHESISDLQKRERALQDQNNMLAKKLKEKERT--LTEQQ 121 (181)
Q Consensus 53 EdL~~Ls~kELq~LE~qLe~aL~~IRsrK---------~qlm~e~I~~LqkKe~~L~EeN~~L~~kl~e~~~~--~~~~~ 121 (181)
++|..||..--..+..++++||.-|..-| .+-|+..+.+.++|-+.....-+....||+|.+.. .. ..
T Consensus 1 ~~Lk~lS~~GekyvdeEik~Al~GvKqMK~~Mek~eeeh~~Lm~tL~k~kk~KeeAl~l~~e~e~kLee~e~~Cn~s-m~ 79 (436)
T PF01093_consen 1 ENLKELSEQGEKYVDEEIKNALNGVKQMKTMMEKTEEEHKELMKTLEKSKKEKEEALKLANEVEEKLEEEEEVCNES-MM 79 (436)
T ss_pred CchHHHhHhCchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 45666777777788899999998886443 44566667666665444444455566677765441 12 45
Q ss_pred hhhh
Q 030228 122 NQMA 125 (181)
Q Consensus 122 ~~~~ 125 (181)
+.|+
T Consensus 80 ~lWe 83 (436)
T PF01093_consen 80 ALWE 83 (436)
T ss_pred HHHH
Confidence 6787
No 28
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=64.79 E-value=31 Score=25.35 Aligned_cols=45 Identities=22% Similarity=0.465 Sum_probs=25.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030228 66 LEQQIDTSLKRLRNRKNQLTHESISDLQKRERALQDQNNMLAKKLK 111 (181)
Q Consensus 66 LE~qLe~aL~~IRsrK~qlm~e~I~~LqkKe~~L~EeN~~L~~kl~ 111 (181)
+++..+.++..+..|+..+ ...|..|.++...|.+.-..++.++.
T Consensus 61 v~~~~~e~~~~l~~r~e~i-e~~i~~lek~~~~l~~~l~e~q~~l~ 105 (110)
T TIGR02338 61 VKTDKEEAIQELKEKKETL-ELRVKTLQRQEERLREQLKELQEKIQ 105 (110)
T ss_pred heecHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666665555433 55566665555555555555554443
No 29
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=64.43 E-value=36 Score=25.84 Aligned_cols=42 Identities=21% Similarity=0.482 Sum_probs=27.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q 030228 65 YLEQQIDTSLKRLRNRKNQLTH---ESISDLQKRERALQDQNNMLAKK 109 (181)
Q Consensus 65 ~LE~qLe~aL~~IRsrK~qlm~---e~I~~LqkKe~~L~EeN~~L~~k 109 (181)
.+.+.+|.|..-| |++||+ ++++-|+.+.+.|.+.|..|+.+
T Consensus 45 aIDNKIeQAMDLV---KtHLmfAVREEVe~Lk~qI~eL~er~~~Le~E 89 (123)
T KOG4797|consen 45 AIDNKIEQAMDLV---KTHLMFAVREEVEVLKEQIRELEERNSALERE 89 (123)
T ss_pred eechHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777666 555553 67777777777777777776654
No 30
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=62.44 E-value=42 Score=22.11 Aligned_cols=39 Identities=31% Similarity=0.550 Sum_probs=28.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030228 73 SLKRLRNRKNQLTHESISDLQKRERALQDQNNMLAKKLKEKER 115 (181)
Q Consensus 73 aL~~IRsrK~qlm~e~I~~LqkKe~~L~EeN~~L~~kl~e~~~ 115 (181)
|-.+.|.||.+. |..|..+...|..+|..|...+.....
T Consensus 16 AAr~~R~RKk~~----~~~Le~~~~~L~~en~~L~~~~~~L~~ 54 (64)
T PF00170_consen 16 AARRSRQRKKQY----IEELEEKVEELESENEELKKELEQLKK 54 (64)
T ss_dssp HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677777654 467888888888888888877766544
No 31
>PF14645 Chibby: Chibby family
Probab=61.89 E-value=14 Score=27.96 Aligned_cols=25 Identities=32% Similarity=0.553 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 030228 87 ESISDLQKRERALQDQNNMLAKKLK 111 (181)
Q Consensus 87 e~I~~LqkKe~~L~EeN~~L~~kl~ 111 (181)
.....++++.+.|.|||+.|+.|++
T Consensus 71 ~~~~~l~~~n~~L~EENN~Lklk~e 95 (116)
T PF14645_consen 71 EENQRLRKENQQLEEENNLLKLKIE 95 (116)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445567777888999999888874
No 32
>PF10504 DUF2452: Protein of unknown function (DUF2452); InterPro: IPR019534 This entry contains proteins that have no known function.
Probab=61.49 E-value=58 Score=26.19 Aligned_cols=41 Identities=29% Similarity=0.309 Sum_probs=31.7
Q ss_pred CHHHHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHH
Q 030228 59 SLRELQYLEQQIDTSLKRLRNR---KNQLTHESISDLQKRERAL 99 (181)
Q Consensus 59 s~kELq~LE~qLe~aL~~IRsr---K~qlm~e~I~~LqkKe~~L 99 (181)
+..||..|=++++.|..-||.+ |-.++.+||..||..-+.+
T Consensus 28 ~~~dlv~la~~iq~Ad~~~~~~t~~kL~~I~eQi~~Lq~QA~~i 71 (159)
T PF10504_consen 28 DPFDLVDLAQQIQKADSAMRANTCNKLEVIAEQIRFLQEQARKI 71 (159)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 5689999999999999999965 6666777777766654433
No 33
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=59.08 E-value=58 Score=22.60 Aligned_cols=38 Identities=29% Similarity=0.327 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030228 79 NRKNQLTHESISDLQKRERALQDQNNMLAKKLKEKERT 116 (181)
Q Consensus 79 srK~qlm~e~I~~LqkKe~~L~EeN~~L~~kl~e~~~~ 116 (181)
..|.+-..+.|..|+.+...|.++|..|.....+....
T Consensus 10 E~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~e 47 (72)
T PF06005_consen 10 EEKIQQAVETIALLQMENEELKEKNNELKEENEELKEE 47 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 45778888999999999999999999999776655443
No 34
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=57.77 E-value=1.1e+02 Score=27.24 Aligned_cols=75 Identities=23% Similarity=0.334 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHhhhhc-----CCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030228 33 YPNLKSRIEVLEKNIRNFM-----GGDLEPLSLRELQYLEQQIDTSLKRLRNRKNQLTHESISDLQKRERALQDQNNMLA 107 (181)
Q Consensus 33 ~~kLk~~ie~Lq~~~R~l~-----GEdL~~Ls~kELq~LE~qLe~aL~~IRsrK~qlm~e~I~~LqkKe~~L~EeN~~L~ 107 (181)
++.|+.+...|++..+-+. +.|-.....++=. .|-.-|...|.+ +.-+..++..|++|...++.+++.|+
T Consensus 32 AEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~----~La~lL~~sre~-Nk~L~~Ev~~Lrqkl~E~qGD~KlLR 106 (319)
T PF09789_consen 32 AEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENK----NLAQLLSESREQ-NKKLKEEVEELRQKLNEAQGDIKLLR 106 (319)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchh----hHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhchHHHHH
Confidence 4445556666666666555 3333322223222 333344555544 44566789999999999999999999
Q ss_pred HHHHH
Q 030228 108 KKLKE 112 (181)
Q Consensus 108 ~kl~e 112 (181)
.++..
T Consensus 107 ~~la~ 111 (319)
T PF09789_consen 107 EKLAR 111 (319)
T ss_pred HHHHh
Confidence 98755
No 35
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=56.70 E-value=50 Score=21.12 Aligned_cols=39 Identities=26% Similarity=0.451 Sum_probs=28.3
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030228 72 TSLKRLRNRKNQLTHESISDLQKRERALQDQNNMLAKKLKEKE 114 (181)
Q Consensus 72 ~aL~~IRsrK~qlm~e~I~~LqkKe~~L~EeN~~L~~kl~e~~ 114 (181)
.|-.+-|.||-+. +..|..+...|..+|..|..++....
T Consensus 14 ~AA~r~R~rkk~~----~~~le~~~~~L~~en~~L~~~i~~L~ 52 (54)
T PF07716_consen 14 EAARRSRQRKKQR----EEELEQEVQELEEENEQLRQEIAQLE 52 (54)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3556666666543 56778888889999999988886543
No 36
>PRK11637 AmiB activator; Provisional
Probab=55.81 E-value=1.6e+02 Score=26.64 Aligned_cols=59 Identities=15% Similarity=0.241 Sum_probs=28.5
Q ss_pred hhHHHHHHHHHHHHHHhhhhcCCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHH--HHHHHHHHHHHHHHH
Q 030228 31 LEYPNLKSRIEVLEKNIRNFMGGDLEPLSLRELQYLEQQIDTSLKRLRNRKNQ--LTHESISDLQKRERA 98 (181)
Q Consensus 31 ~E~~kLk~~ie~Lq~~~R~l~GEdL~~Ls~kELq~LE~qLe~aL~~IRsrK~q--lm~e~I~~LqkKe~~ 98 (181)
.++..+..++..++...+. ..++|..|+.+|...-..|+....+ .+..+|..++++...
T Consensus 54 ~qi~~~~~~i~~~~~~~~~---------~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~ 114 (428)
T PRK11637 54 QDIAAKEKSVRQQQQQRAS---------LLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAK 114 (428)
T ss_pred HHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443 2345666777776666666554433 233344444443333
No 37
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=55.57 E-value=24 Score=26.81 Aligned_cols=30 Identities=27% Similarity=0.465 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030228 81 KNQLTHESISDLQKRERALQDQNNMLAKKL 110 (181)
Q Consensus 81 K~qlm~e~I~~LqkKe~~L~EeN~~L~~kl 110 (181)
..+.+.++|.+|-.+...|..+|..|+.-+
T Consensus 68 EVe~Lk~qI~eL~er~~~Le~EN~lLk~~~ 97 (123)
T KOG4797|consen 68 EVEVLKEQIRELEERNSALERENSLLKTLA 97 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 467889999999999999999999998654
No 38
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=52.13 E-value=2.8e+02 Score=28.63 Aligned_cols=51 Identities=33% Similarity=0.451 Sum_probs=35.3
Q ss_pred hhhhhhHHHHHHHHHHHHH-------HhhhhcCCCCCCCCHHHHHHHHHH---HHHHhHHHH
Q 030228 27 GCWSLEYPNLKSRIEVLEK-------NIRNFMGGDLEPLSLRELQYLEQQ---IDTSLKRLR 78 (181)
Q Consensus 27 ~~~~~E~~kLk~~ie~Lq~-------~~R~l~GEdL~~Ls~kELq~LE~q---Le~aL~~IR 78 (181)
+..+.|+..++.+++.|.. .+-+ -|-|-...|--++.+||+| |..+|-+.|
T Consensus 328 esLQ~eve~lkEr~deletdlEILKaEmee-kG~~~~~~ss~qfkqlEqqN~rLKdalVrLR 388 (1243)
T KOG0971|consen 328 ESLQQEVEALKERVDELETDLEILKAEMEE-KGSDGQAASSYQFKQLEQQNARLKDALVRLR 388 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCcccchHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777777655443 3322 2778888888899999976 666777777
No 39
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=52.05 E-value=59 Score=23.68 Aligned_cols=38 Identities=21% Similarity=0.408 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030228 77 LRNRKNQLTHESISDLQKRERALQDQNNMLAKKLKEKE 114 (181)
Q Consensus 77 IRsrK~qlm~e~I~~LqkKe~~L~EeN~~L~~kl~e~~ 114 (181)
||+.=......+++.|..+...+..+|..|...|.+..
T Consensus 70 i~a~l~~~~~~~~~~L~~~l~~l~~eN~~L~~~i~~~r 107 (109)
T PF03980_consen 70 IRAHLAPYKKKEREQLNARLQELEEENEALAEEIQEQR 107 (109)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44555555567889999999999999999999997653
No 40
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=50.75 E-value=64 Score=21.51 Aligned_cols=30 Identities=23% Similarity=0.387 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030228 84 LTHESISDLQKRERALQDQNNMLAKKLKEK 113 (181)
Q Consensus 84 lm~e~I~~LqkKe~~L~EeN~~L~~kl~e~ 113 (181)
-+..+|..|+++...+..+|..|..++...
T Consensus 21 ~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 21 QLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345678899999999999999999998776
No 41
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=50.72 E-value=1.6e+02 Score=28.63 Aligned_cols=85 Identities=22% Similarity=0.298 Sum_probs=55.8
Q ss_pred hhHHHHHHHHHHHHHHhhhhcCCCCCCCCHH-HHHHHHHHHHHHhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030228 31 LEYPNLKSRIEVLEKNIRNFMGGDLEPLSLR-ELQYLEQQIDTSLK----RLRNRKNQLTHESISDLQKRERALQDQNNM 105 (181)
Q Consensus 31 ~E~~kLk~~ie~Lq~~~R~l~GEdL~~Ls~k-ELq~LE~qLe~aL~----~IRsrK~qlm~e~I~~LqkKe~~L~EeN~~ 105 (181)
.|..+|+.+++.+....-++-+-++.-..++ .|..+|..++...+ -+-....+=..+....|+..+..+.++|..
T Consensus 121 ~e~~~lk~~lee~~~el~~~k~qq~~v~~l~e~l~k~~~~~~~~ie~~a~~~e~~~~q~~~e~e~~L~~~~~~~~~q~~~ 200 (629)
T KOG0963|consen 121 EENEELKEELEEVNNELADLKTQQVTVRNLKERLRKLEQLLEIFIENAANETEEKLEQEWAEREAGLKDEEQNLQEQLEE 200 (629)
T ss_pred hhHHHHHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888888887777777766555544 46666666666655 444444455556666666667777777777
Q ss_pred HHHHHHHHHH
Q 030228 106 LAKKLKEKER 115 (181)
Q Consensus 106 L~~kl~e~~~ 115 (181)
+.++|...+.
T Consensus 201 le~ki~~lq~ 210 (629)
T KOG0963|consen 201 LEKKISSLQS 210 (629)
T ss_pred HHHHHHHHHH
Confidence 7777765543
No 42
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=50.66 E-value=59 Score=23.99 Aligned_cols=34 Identities=12% Similarity=0.220 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030228 82 NQLTHESISDLQKRERALQDQNNMLAKKLKEKER 115 (181)
Q Consensus 82 ~qlm~e~I~~LqkKe~~L~EeN~~L~~kl~e~~~ 115 (181)
..-+..++..++++...++.+|..|+.+|.....
T Consensus 29 ~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 29 YWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 4445667788888888888889999888876543
No 43
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=48.09 E-value=85 Score=29.43 Aligned_cols=50 Identities=24% Similarity=0.306 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030228 60 LRELQYLEQQIDT--SLKRLRNRKNQLTHESISDLQKRERALQDQNNMLAKK 109 (181)
Q Consensus 60 ~kELq~LE~qLe~--aL~~IRsrK~qlm~e~I~~LqkKe~~L~EeN~~L~~k 109 (181)
+.|..+|++.+.. +.++|=.+|-+.+...+..+++..+.+.|.|+.|.+-
T Consensus 360 ~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~kn 411 (493)
T KOG0804|consen 360 ITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKN 411 (493)
T ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4445555444433 4566778888888999999999999999999888653
No 44
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=47.94 E-value=72 Score=29.99 Aligned_cols=42 Identities=26% Similarity=0.370 Sum_probs=30.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030228 65 YLEQQIDTSLKRLRNRKNQLTHESISDLQKRERALQDQNNMLAKKLK 111 (181)
Q Consensus 65 ~LE~qLe~aL~~IRsrK~qlm~e~I~~LqkKe~~L~EeN~~L~~kl~ 111 (181)
.||++|+.- | +-.++|.....+++.|.+.|..+|..|+.+++
T Consensus 80 ELEKqLaaL----r-qElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~ 121 (475)
T PRK13729 80 QMQKQYEEI----R-RELDVLNKQRGDDQRRIEKLGQDNAALAEQVK 121 (475)
T ss_pred HHHHHHHHH----H-HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 445555544 2 22356667778889999999999999999984
No 45
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=47.67 E-value=71 Score=27.47 Aligned_cols=44 Identities=16% Similarity=0.444 Sum_probs=32.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 030228 71 DTSLKRLRNRKNQLTHESISDLQKRERALQDQNNMLAKKLKEKERTLT 118 (181)
Q Consensus 71 e~aL~~IRsrK~qlm~e~I~~LqkKe~~L~EeN~~L~~kl~e~~~~~~ 118 (181)
-.|+++=|.+..+.. .+++.|...|..+|..|+.+|.+..+...
T Consensus 203 N~A~~kSR~~~k~~~----~e~~~r~~~leken~~lr~~v~~l~~el~ 246 (269)
T KOG3119|consen 203 NEAVRKSRDKRKQKE----DEMAHRVAELEKENEALRTQVEQLKKELA 246 (269)
T ss_pred hHHHHHhhhhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345665554443332 78889999999999999999988776554
No 46
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=47.57 E-value=2.6e+02 Score=26.79 Aligned_cols=27 Identities=26% Similarity=0.428 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030228 85 THESISDLQKRERALQDQNNMLAKKLK 111 (181)
Q Consensus 85 m~e~I~~LqkKe~~L~EeN~~L~~kl~ 111 (181)
+..+..+++.+...|.+....|..+..
T Consensus 211 L~~q~~e~~~ri~~LEedi~~l~qk~~ 237 (546)
T PF07888_consen 211 LKEQLAEARQRIRELEEDIKTLTQKEK 237 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555556655555555543
No 47
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=47.05 E-value=1.2e+02 Score=28.18 Aligned_cols=72 Identities=21% Similarity=0.294 Sum_probs=43.4
Q ss_pred ChHHHHHHhhhhhhhhhhcccchhhhhhhhhhHHHHHHHHHHHHHHhhhhcCCCCCCCCHHHHHHHHHHHHHHhHHHHHH
Q 030228 1 MERILERYERNAYVEQQLVTNDAELQGCWSLEYPNLKSRIEVLEKNIRNFMGGDLEPLSLRELQYLEQQIDTSLKRLRNR 80 (181)
Q Consensus 1 M~~iLERY~~~s~~~~~~~~~~~~~~~~~~~E~~kLk~~ie~Lq~~~R~l~GEdL~~Ls~kELq~LE~qLe~aL~~IRsr 80 (181)
|+++.+.|++|-........ + .++..+..+.+.+....+++.-+ +++|..=|.+|+..|...+++
T Consensus 155 ~~~e~~~Y~~~l~~Le~~~~---~------~~~~~~~~e~~~l~~eE~~L~q~------lk~le~~~~~l~~~l~e~~~~ 219 (447)
T KOG2751|consen 155 AEDEVDTYKACLQRLEQQNQ---D------VSEEDLLKELKNLKEEEERLLQQ------LEELEKEEAELDHQLKELEFK 219 (447)
T ss_pred HHHHHHHHHHHHHHHhhcCc---c------cchHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 45677888887543222111 1 14555555556665555555432 456666667888888888888
Q ss_pred HHHHHHH
Q 030228 81 KNQLTHE 87 (181)
Q Consensus 81 K~qlm~e 87 (181)
|.++..+
T Consensus 220 ~~~~~e~ 226 (447)
T KOG2751|consen 220 AERLNEE 226 (447)
T ss_pred HHHHHHH
Confidence 8877543
No 48
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=46.61 E-value=1.6e+02 Score=23.94 Aligned_cols=9 Identities=22% Similarity=0.375 Sum_probs=5.0
Q ss_pred HHHHHHhhh
Q 030228 3 RILERYERN 11 (181)
Q Consensus 3 ~iLERY~~~ 11 (181)
.+|++|...
T Consensus 95 ~~l~~y~~l 103 (189)
T PF10211_consen 95 MTLDAYQTL 103 (189)
T ss_pred HHHHHHHHH
Confidence 456666544
No 49
>PF06721 DUF1204: Protein of unknown function (DUF1204); InterPro: IPR009596 This family represents the C terminus of a number of Arabidopsis thaliana hypothetical proteins of unknown function. Family members contain a conserved DFD motif.
Probab=46.44 E-value=1.7e+02 Score=24.38 Aligned_cols=80 Identities=25% Similarity=0.294 Sum_probs=47.7
Q ss_pred hhhHHHHHHHHHHHHHHhhhhcCCCCCCCCHH--H----HHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 030228 30 SLEYPNLKSRIEVLEKNIRNFMGGDLEPLSLR--E----LQYLEQQIDTSLKRLRNRKNQLTHES-ISDLQKRERALQDQ 102 (181)
Q Consensus 30 ~~E~~kLk~~ie~Lq~~~R~l~GEdL~~Ls~k--E----Lq~LE~qLe~aL~~IRsrK~qlm~e~-I~~LqkKe~~L~Ee 102 (181)
+.+.+.+|..++.| ..+|-.||++++-++.+ + -..||..+-.--++.|+||....... -+.|.+-+..++-.
T Consensus 14 s~~a~~~k~~~~~l-a~~~~~~~~~~~r~~~d~~~~~~K~deLedr~~se~KRLRsrR~~~AEn~rrs~L~kv~~l~QAR 92 (228)
T PF06721_consen 14 SKEAAHAKSEHATL-AYQRTVMGQERDRCQDDAEKMNVKFDELEDRISSEQKRLRSRRINYAENNRRSALEKVASLYQAR 92 (228)
T ss_pred hHHhhhhhhHHHHH-HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777776 46788889988776542 2 34677777777888888776544322 22333333344444
Q ss_pred HHHHHHHH
Q 030228 103 NNMLAKKL 110 (181)
Q Consensus 103 N~~L~~kl 110 (181)
-..++..|
T Consensus 93 idRvK~Hi 100 (228)
T PF06721_consen 93 IDRVKAHI 100 (228)
T ss_pred HHHHHHHh
Confidence 44444444
No 50
>smart00340 HALZ homeobox associated leucin zipper.
Probab=45.99 E-value=59 Score=20.55 Aligned_cols=26 Identities=23% Similarity=0.313 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030228 90 SDLQKRERALQDQNNMLAKKLKEKER 115 (181)
Q Consensus 90 ~~LqkKe~~L~EeN~~L~~kl~e~~~ 115 (181)
+-|++=-..|-++|..|++.+.+...
T Consensus 8 e~LKrcce~LteeNrRL~ke~~eLra 33 (44)
T smart00340 8 ELLKRCCESLTEENRRLQKEVQELRA 33 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34666677899999999999987753
No 51
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=45.31 E-value=1.6e+02 Score=23.67 Aligned_cols=56 Identities=23% Similarity=0.376 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 030228 60 LRELQYLEQQIDTSLKRLRNRKNQLTHESISDLQKRERALQDQNNMLAKKLKEKERTL 117 (181)
Q Consensus 60 ~kELq~LE~qLe~aL~~IRsrK~qlm~e~I~~LqkKe~~L~EeN~~L~~kl~e~~~~~ 117 (181)
+.+|......|..+|..+ ...+-+...|..|++....|.+.-+.+.++|.+.....
T Consensus 4 ~~~L~~~d~~L~~~L~~l--~~hq~~~~~I~~L~~e~~~ld~~i~~~~~~L~~~~~~L 59 (188)
T PF10018_consen 4 AEDLIEADDELSSALEEL--QEHQENQARIQQLRAEIEELDEQIRDILKQLKEARKEL 59 (188)
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888899999999987 45566677788888877777777777777777665544
No 52
>PRK11637 AmiB activator; Provisional
Probab=44.87 E-value=2.4e+02 Score=25.50 Aligned_cols=80 Identities=18% Similarity=0.234 Sum_probs=44.0
Q ss_pred hhhhHHHHHHHHHHHHHHhhhhcCCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Q 030228 29 WSLEYPNLKSRIEVLEKNIRNFMGGDLEPLSLRELQYLEQQIDTSLKRLRNRKNQ--LTHESISDLQKRERALQDQNNML 106 (181)
Q Consensus 29 ~~~E~~kLk~~ie~Lq~~~R~l~GEdL~~Ls~kELq~LE~qLe~aL~~IRsrK~q--lm~e~I~~LqkKe~~L~EeN~~L 106 (181)
...+...++.+++.++..+.. .-+++..++.+|+..-.+|.....+ -...+|..++++...++.+-..+
T Consensus 45 ~~~~l~~l~~qi~~~~~~i~~---------~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~ 115 (428)
T PRK11637 45 NRDQLKSIQQDIAAKEKSVRQ---------QQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKL 115 (428)
T ss_pred hHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666654443 1245556666666655555544333 24556666666666666666666
Q ss_pred HHHHHHHHHhH
Q 030228 107 AKKLKEKERTL 117 (181)
Q Consensus 107 ~~kl~e~~~~~ 117 (181)
+.++.......
T Consensus 116 q~~l~~~~~~l 126 (428)
T PRK11637 116 EQQQAAQERLL 126 (428)
T ss_pred HHHHHHHHHHH
Confidence 66665544433
No 53
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=44.44 E-value=26 Score=32.69 Aligned_cols=58 Identities=31% Similarity=0.347 Sum_probs=30.4
Q ss_pred CCCHHHHHHHHHHHHHHhHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030228 57 PLSLRELQYLEQQIDTSLKRLRNRKNQLT---------HESISDLQKRERALQDQNNMLAKKLKEKE 114 (181)
Q Consensus 57 ~Ls~kELq~LE~qLe~aL~~IRsrK~qlm---------~e~I~~LqkKe~~L~EeN~~L~~kl~e~~ 114 (181)
+.++-+.--|=+-=|.+|++||.+=.-.. .+-|+.|..+...--.+|+.|.+|+.+.+
T Consensus 233 G~slPs~lPLTKaEEriLKrvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~~Le 299 (472)
T KOG0709|consen 233 GYSLPSKLPLTKAEERILKRVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVEELE 299 (472)
T ss_pred cCcCcccCCchHHHHHHHHHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHHHHh
Confidence 35555666666666778888874311111 12334444444444455666666665544
No 54
>KOG3759 consensus Uncharacterized RUN domain protein [Signal transduction mechanisms]
Probab=44.03 E-value=2.9e+02 Score=26.28 Aligned_cols=23 Identities=43% Similarity=0.629 Sum_probs=18.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhHHHH
Q 030228 53 GDLEPLSLRELQYLEQQIDTSLKRLR 78 (181)
Q Consensus 53 EdL~~Ls~kELq~LE~qLe~aL~~IR 78 (181)
=||+.||.+||+ +|++.|++.+=
T Consensus 197 l~i~~lsteelr---~qVD~A~~q~V 219 (621)
T KOG3759|consen 197 LDIDKLSTEELR---RQVDDALKQLV 219 (621)
T ss_pred CCcccccHHHHH---HHHHHHHHHHh
Confidence 358899988876 69999999864
No 55
>PF02151 UVR: UvrB/uvrC motif; InterPro: IPR001943 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products []. UvrB and UvrC share a common domain of around 35 amino acids, the so called UVR domain. This domain in UvrB can interact with the homologous domain in UvrC throughout a putative coiled coil structure. This interaction is important for the incision of the damaged strand [].; GO: 0003677 DNA binding, 0004518 nuclease activity, 0006289 nucleotide-excision repair; PDB: 3PXG_D 3PXI_C 1E52_B 1QOJ_B 2D7D_B 2NMV_B.
Probab=43.51 E-value=61 Score=19.11 Aligned_cols=33 Identities=18% Similarity=0.289 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 030228 62 ELQYLEQQIDTSLKRLRNRKNQLTHESISDLQK 94 (181)
Q Consensus 62 ELq~LE~qLe~aL~~IRsrK~qlm~e~I~~Lqk 94 (181)
.|..|+..++.|...-+--+.-.+.++|..|++
T Consensus 3 ~i~~l~~~m~~a~~~~dfE~Aa~~Rd~i~~l~~ 35 (36)
T PF02151_consen 3 LIKELEEKMEEAVENEDFEKAARLRDQIKALKK 35 (36)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHc
Confidence 467788888888887777777777777777665
No 56
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=42.90 E-value=1.4e+02 Score=22.65 Aligned_cols=40 Identities=23% Similarity=0.352 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030228 60 LRELQYLEQQIDTSLKRLRNRKNQLTHESISDLQKRERALQDQNNMLAKKLK 111 (181)
Q Consensus 60 ~kELq~LE~qLe~aL~~IRsrK~qlm~e~I~~LqkKe~~L~EeN~~L~~kl~ 111 (181)
++.+.+||+||-.-++.| +.|++....|.|+|..|+-...
T Consensus 7 Fd~v~~le~~l~~l~~el------------~~lK~~l~~lvEEN~~L~lENe 46 (114)
T COG4467 7 FDQVDNLEEQLGVLLAEL------------GGLKQHLGSLVEENTALRLENE 46 (114)
T ss_pred HHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHhhHHHHhhHH
Confidence 456778888887666554 4555555556666666554443
No 57
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=42.61 E-value=44 Score=29.58 Aligned_cols=54 Identities=20% Similarity=0.390 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHhHHHH------HHHHHHHH-------------------------------HHHHHHHHHHHHHHHHH
Q 030228 61 RELQYLEQQIDTSLKRLR------NRKNQLTH-------------------------------ESISDLQKRERALQDQN 103 (181)
Q Consensus 61 kELq~LE~qLe~aL~~IR------srK~qlm~-------------------------------e~I~~LqkKe~~L~EeN 103 (181)
.....||.+|..++..|. +.|++|+. -.++.||+|.+.|.++|
T Consensus 97 ~~~~~le~~L~~~~e~v~qLrHeL~~kdeLL~~ys~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~le~Lq~Klk~LEeEN 176 (306)
T PF04849_consen 97 ERNEALEEQLGAALEQVEQLRHELSMKDELLQIYSNDDEESEPESSESTPLRRNESSLSSQKCIQLEALQEKLKSLEEEN 176 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHhhhcccccCCCccccccccccccccchhHHHHHHHHHHHHHHH
Confidence 667778999988888887 44555532 12588999999999999
Q ss_pred HHHHHHHHHHH
Q 030228 104 NMLAKKLKEKE 114 (181)
Q Consensus 104 ~~L~~kl~e~~ 114 (181)
..|+.+.....
T Consensus 177 ~~LR~Ea~~L~ 187 (306)
T PF04849_consen 177 EQLRSEASQLK 187 (306)
T ss_pred HHHHHHHHHhh
Confidence 99999876543
No 58
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=42.31 E-value=54 Score=26.48 Aligned_cols=42 Identities=21% Similarity=0.500 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030228 63 LQYLEQQIDTSLKRLRNRKNQLTHESISDLQKRERALQDQNNMLAKKLKEK 113 (181)
Q Consensus 63 Lq~LE~qLe~aL~~IRsrK~qlm~e~I~~LqkKe~~L~EeN~~L~~kl~e~ 113 (181)
|..+|..|..|+.+ +-+|..+| +.||. |.+++..|+.++.+.
T Consensus 2 LeD~EsklN~AIER-----nalLE~EL---dEKE~-L~~~~QRLkDE~RDL 43 (166)
T PF04880_consen 2 LEDFESKLNQAIER-----NALLESEL---DEKEN-LREEVQRLKDELRDL 43 (166)
T ss_dssp HHHHHHHHHHHHHH-----HHHHHHHH---HHHHH-HHHCH----------
T ss_pred HHHHHHHHHHHHHH-----hHHHHHHH---HHHHH-HHHHHHHHHHHHHHH
Confidence 67889999998875 55666666 33333 566666666655543
No 59
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=42.28 E-value=1.5e+02 Score=22.34 Aligned_cols=44 Identities=18% Similarity=0.246 Sum_probs=33.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 030228 73 SLKRLRNRKNQLTHESISDLQKRERALQDQNNMLAKKLKEKERTL 117 (181)
Q Consensus 73 aL~~IRsrK~qlm~e~I~~LqkKe~~L~EeN~~L~~kl~e~~~~~ 117 (181)
++..+ ......|.++|..|+.....|.|+|..|+..-.......
T Consensus 9 ~l~~l-e~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l 52 (110)
T PRK13169 9 ALDDL-EQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERL 52 (110)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444 334556789999999999999999999998866655444
No 60
>PLN02320 seryl-tRNA synthetase
Probab=42.08 E-value=3.1e+02 Score=26.00 Aligned_cols=80 Identities=20% Similarity=0.319 Sum_probs=46.7
Q ss_pred hhHHHHHHHHHHHHHHhhhhcCCCCCCCCHHHHHHHH---HHHHHHhHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Q 030228 31 LEYPNLKSRIEVLEKNIRNFMGGDLEPLSLRELQYLE---QQIDTSLKRLRNRKNQLTHESISDLQKR--ERALQDQNNM 105 (181)
Q Consensus 31 ~E~~kLk~~ie~Lq~~~R~l~GEdL~~Ls~kELq~LE---~qLe~aL~~IRsrK~qlm~e~I~~LqkK--e~~L~EeN~~ 105 (181)
..+..++...+.+..+++.. |-+ ++++++..|. +++..-+..+|.+++.+-. +|..-.++ ...|.++-+.
T Consensus 67 lD~k~ir~n~~~v~~~l~~R-~~~---~~vd~l~~ld~~~r~~~~~~~~lr~ern~~sk-~i~~~~~~~~~~~l~~~~k~ 141 (502)
T PLN02320 67 IDFKWIRDNKEAVAINIRNR-NSN---ANLELVLELYENMLALQKEVERLRAERNAVAN-KMKGKLEPSERQALVEEGKN 141 (502)
T ss_pred cCHHHHHhCHHHHHHHHHhc-CCC---cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhCCCCHHHHHHHHHH
Confidence 35677788888888887765 334 3488888887 4556666777777776532 33321111 1234455555
Q ss_pred HHHHHHHHHH
Q 030228 106 LAKKLKEKER 115 (181)
Q Consensus 106 L~~kl~e~~~ 115 (181)
|+.++.+.+.
T Consensus 142 lk~~i~~le~ 151 (502)
T PLN02320 142 LKEGLVTLEE 151 (502)
T ss_pred HHHHHHHHHH
Confidence 5555554443
No 61
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=39.61 E-value=1.3e+02 Score=20.86 Aligned_cols=49 Identities=24% Similarity=0.327 Sum_probs=33.2
Q ss_pred HHHHHHHHHhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030228 65 YLEQQIDTSLKRLR---NRKNQLTHESISDLQKRERALQDQNNMLAKKLKEK 113 (181)
Q Consensus 65 ~LE~qLe~aL~~IR---srK~qlm~e~I~~LqkKe~~L~EeN~~L~~kl~e~ 113 (181)
.||.+|-+||..+- ++.-+-.......|+..-..-..+|..|+.++...
T Consensus 3 eLE~qLl~ale~Lq~~y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~L 54 (70)
T PF04899_consen 3 ELEKQLLSALEELQQSYEKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNL 54 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 58999999887765 55666777777888776555555555555555443
No 62
>PRK09039 hypothetical protein; Validated
Probab=39.25 E-value=2.8e+02 Score=24.65 Aligned_cols=47 Identities=32% Similarity=0.422 Sum_probs=33.1
Q ss_pred hhHHHHHHHHHHHHHHhhhhcCCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 030228 31 LEYPNLKSRIEVLEKNIRNFMGGDLEPLSLRELQYLEQQIDTSLKRLRNRKNQLTHESISDLQKRERA 98 (181)
Q Consensus 31 ~E~~kLk~~ie~Lq~~~R~l~GEdL~~Ls~kELq~LE~qLe~aL~~IRsrK~qlm~e~I~~LqkKe~~ 98 (181)
.++..|+++|+.|+.. |..||..|+.+=.+.+..+ .+|..|+++...
T Consensus 137 ~~V~~L~~qI~aLr~Q----------------la~le~~L~~ae~~~~~~~-----~~i~~L~~~L~~ 183 (343)
T PRK09039 137 AQVELLNQQIAALRRQ----------------LAALEAALDASEKRDRESQ-----AKIADLGRRLNV 183 (343)
T ss_pred HHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHH
Confidence 4577788888888866 8888888888877775544 455666665443
No 63
>PF08781 DP: Transcription factor DP; InterPro: IPR014889 DP forms a heterodimer with E2F and regulates genes involved in cell cycle progression. The transcriptional activity of E2F is inhibited by the retinoblastoma protein which binds to the E2F-DP heterodimer [] and negatively regulates the G1-S transition. ; PDB: 2AZE_A.
Probab=39.01 E-value=1.9e+02 Score=22.75 Aligned_cols=24 Identities=29% Similarity=0.494 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHH
Q 030228 61 RELQYLEQQIDTSLKRLRNRKNQL 84 (181)
Q Consensus 61 kELq~LE~qLe~aL~~IRsrK~ql 84 (181)
.|.+.||..-.....+|+.++.+|
T Consensus 1 q~~~~Le~ek~~~~~rI~~K~~~L 24 (142)
T PF08781_consen 1 QECEELEEEKQRRRERIKKKKEQL 24 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHH
Confidence 367889999999999998877654
No 64
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=38.97 E-value=1.1e+02 Score=20.89 Aligned_cols=33 Identities=18% Similarity=0.155 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030228 82 NQLTHESISDLQKRERALQDQNNMLAKKLKEKE 114 (181)
Q Consensus 82 ~qlm~e~I~~LqkKe~~L~EeN~~L~~kl~e~~ 114 (181)
...+..++..++++...++.+|..|+.++....
T Consensus 26 ~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~ 58 (85)
T TIGR02209 26 TRQLNNELQKLQLEIDKLQKEWRDLQLEVAELS 58 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 346677888999999999999999999887643
No 65
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=38.96 E-value=1.5e+02 Score=21.43 Aligned_cols=100 Identities=17% Similarity=0.238 Sum_probs=49.1
Q ss_pred hHHHHHHhhhhhhhhhhcccchhhhhhhhhhHHHHHHHHHHHH--HHhhhhcCCCCCCCCHHHHHHHHHHHHHHhHHHHH
Q 030228 2 ERILERYERNAYVEQQLVTNDAELQGCWSLEYPNLKSRIEVLE--KNIRNFMGGDLEPLSLRELQYLEQQIDTSLKRLRN 79 (181)
Q Consensus 2 ~~iLERY~~~s~~~~~~~~~~~~~~~~~~~E~~kLk~~ie~Lq--~~~R~l~GEdL~~Ls~kELq~LE~qLe~aL~~IRs 79 (181)
..++..|+.+-..-..... .......-..|+.....+++.|. ...-.+.|+=+ ++...+.+...+-.
T Consensus 2 q~~~~~~q~l~~~~~~l~~-~~~~l~~~~~E~~~v~~EL~~l~~d~~vy~~VG~vf----------v~~~~~ea~~~Le~ 70 (105)
T cd00632 2 QEQLAQLQQLQQQLQAYIV-QRQKVEAQLNENKKALEELEKLADDAEVYKLVGNVL----------VKQEKEEARTELKE 70 (105)
T ss_pred hHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCCCcchHHHHhhhHH----------hhccHHHHHHHHHH
Confidence 4567777766432221111 11111122344444555555552 22234556533 34444555555544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030228 80 RKNQLTHESISDLQKRERALQDQNNMLAKKLKEK 113 (181)
Q Consensus 80 rK~qlm~e~I~~LqkKe~~L~EeN~~L~~kl~e~ 113 (181)
++ +.+...|+.+.++...+..+-..++.+|.+.
T Consensus 71 ~~-e~le~~i~~l~~~~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 71 RL-ETIELRIKRLERQEEDLQEKLKELQEKIQQA 103 (105)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 3445566666666666666666666666554
No 66
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=38.01 E-value=2.7e+02 Score=24.11 Aligned_cols=82 Identities=17% Similarity=0.326 Sum_probs=54.2
Q ss_pred hHHHHHHHHHHHHHHhhhhcCCCCCCCCHHHHHHHHHHHHHHhHHH------------------HHHHHHHHHHHHHHHH
Q 030228 32 EYPNLKSRIEVLEKNIRNFMGGDLEPLSLRELQYLEQQIDTSLKRL------------------RNRKNQLTHESISDLQ 93 (181)
Q Consensus 32 E~~kLk~~ie~Lq~~~R~l~GEdL~~Ls~kELq~LE~qLe~aL~~I------------------RsrK~qlm~e~I~~Lq 93 (181)
.++.|..++..|...+..=++ +|..+--.+|..|+.+.+..-..| +.+.++.|..+|..-+
T Consensus 121 qIa~L~rqlq~lk~~qqdEld-el~e~~~~el~~l~~~~q~k~~~il~~~~~k~~~~~~~~l~~~~~~N~~m~kei~~~r 199 (258)
T PF15397_consen 121 QIANLVRQLQQLKDSQQDELD-ELNEMRQMELASLSRKIQEKKEEILSSAAEKTQSPMQPALLQRTLENQVMQKEIVQFR 199 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHH
Confidence 466677777777766665333 344444556666666655443333 3467888888888877
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 030228 94 KRERALQDQNNMLAKKLKEKE 114 (181)
Q Consensus 94 kKe~~L~EeN~~L~~kl~e~~ 114 (181)
.-+..|.++...|+..+....
T Consensus 200 e~i~el~e~I~~L~~eV~~L~ 220 (258)
T PF15397_consen 200 EEIDELEEEIPQLRAEVEQLQ 220 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 777888888888888876553
No 67
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=37.09 E-value=2.7e+02 Score=23.96 Aligned_cols=59 Identities=24% Similarity=0.397 Sum_probs=27.5
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030228 51 MGGDLEPLSLRELQYLEQQIDTSLKRLRNRKNQ------LTHESISDLQKRERALQDQNNMLAKKLKE 112 (181)
Q Consensus 51 ~GEdL~~Ls~kELq~LE~qLe~aL~~IRsrK~q------lm~e~I~~LqkKe~~L~EeN~~L~~kl~e 112 (181)
.|-|++.+.++ -.++.|.+||-+.--+--+ =|.+-..+++.|...++++|..|.+.+.+
T Consensus 96 iGHDvEhiD~e---lvrkEl~nAlvRAGLktL~~v~~~~d~ke~~ee~kekl~E~~~EkeeL~~elee 160 (290)
T COG4026 96 IGHDVEHIDVE---LVRKELKNALVRAGLKTLQRVPEYMDLKEDYEELKEKLEELQKEKEELLKELEE 160 (290)
T ss_pred CCCCccccCHH---HHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788777653 3455555554332211111 23334444444444444444444444433
No 68
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=36.68 E-value=1.4e+02 Score=20.56 Aligned_cols=34 Identities=32% Similarity=0.396 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030228 81 KNQLTHESISDLQKRERALQDQNNMLAKKLKEKE 114 (181)
Q Consensus 81 K~qlm~e~I~~LqkKe~~L~EeN~~L~~kl~e~~ 114 (181)
+.......|..|+.+...+......|..++....
T Consensus 27 ~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e 60 (74)
T PF12329_consen 27 KELKLNNTIKKLRAKIKELEKQIKELKKKLEELE 60 (74)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444455555555555555555555554433
No 69
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=36.36 E-value=1.2e+02 Score=21.55 Aligned_cols=33 Identities=27% Similarity=0.374 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030228 80 RKNQLTHESISDLQKRERALQDQNNMLAKKLKE 112 (181)
Q Consensus 80 rK~qlm~e~I~~LqkKe~~L~EeN~~L~~kl~e 112 (181)
.|.|-..|.|.-||-....|.+.|..|..++..
T Consensus 11 ~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~ 43 (79)
T PRK15422 11 AKVQQAIDTITLLQMEIEELKEKNNSLSQEVQN 43 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477888899999999999999999999999876
No 70
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=35.55 E-value=2.6e+02 Score=23.22 Aligned_cols=78 Identities=19% Similarity=0.309 Sum_probs=48.0
Q ss_pred hhhhhHHHHHHHHHHHHHHhhhhcCCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030228 28 CWSLEYPNLKSRIEVLEKNIRNFMGGDLEPLSLRELQYLEQQIDTSLKRLRNRKNQLTHESISDLQKRERALQDQNNMLA 107 (181)
Q Consensus 28 ~~~~E~~kLk~~ie~Lq~~~R~l~GEdL~~Ls~kELq~LE~qLe~aL~~IRsrK~qlm~e~I~~LqkKe~~L~EeN~~L~ 107 (181)
....|+.+|+..|+...-.-..| |+ |+..|..++.+. .+. ..+...+.+++.+|+.--+.|.|+|+.|.
T Consensus 19 ~L~~en~kL~~~ve~~ee~na~L-~~--------e~~~L~~q~~s~-Qqa-l~~aK~l~eEledLk~~~~~lEE~~~~L~ 87 (193)
T PF14662_consen 19 KLADENAKLQRSVETAEEGNAQL-AE--------EITDLRKQLKSL-QQA-LQKAKALEEELEDLKTLAKSLEEENRSLL 87 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HH--------HHHHHHHHHHHH-HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567778888877777666654 33 344444554433 111 34555667777888877777777777777
Q ss_pred HHHHHHHHh
Q 030228 108 KKLKEKERT 116 (181)
Q Consensus 108 ~kl~e~~~~ 116 (181)
.+-...++.
T Consensus 88 aq~rqlEkE 96 (193)
T PF14662_consen 88 AQARQLEKE 96 (193)
T ss_pred HHHHHHHHH
Confidence 666554443
No 71
>PF12537 DUF3735: Protein of unknown function (DUF3735); InterPro: IPR022535 This conserved domain is found in a subunit of a voltage dependent anion channel required for acidification and functions of the Golgi apparatus; it may function in counter-ion conductance. It belongs to the Golgi pH regulator (1.A.38 from TC) family
Probab=33.29 E-value=78 Score=21.65 Aligned_cols=25 Identities=16% Similarity=0.238 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHH
Q 030228 60 LRELQYLEQQIDTSLKRLRNRKNQL 84 (181)
Q Consensus 60 ~kELq~LE~qLe~aL~~IRsrK~ql 84 (181)
-.|+..+|++|.....-+.+||.++
T Consensus 47 ~~~i~~~~~~l~~t~~~l~~Kk~~l 71 (72)
T PF12537_consen 47 ESDINNAERRLWHTRDMLVEKKKRL 71 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6799999999999999999998764
No 72
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=33.18 E-value=56 Score=17.94 Aligned_cols=16 Identities=38% Similarity=0.630 Sum_probs=11.1
Q ss_pred hHHHHHHHHHHHHHHh
Q 030228 32 EYPNLKSRIEVLEKNI 47 (181)
Q Consensus 32 E~~kLk~~ie~Lq~~~ 47 (181)
|+.+||.+|..|++.+
T Consensus 2 E~~rlr~rI~dLer~L 17 (23)
T PF04508_consen 2 EMNRLRNRISDLERQL 17 (23)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 5677777777777653
No 73
>cd04769 HTH_MerR2 Helix-Turn-Helix DNA binding domain of MerR2-like transcription regulators. Helix-turn-helix (HTH) transcription regulator MerR2 and related proteins. MerR2 in Bacillus cereus RC607 regulates resistance to organomercurials. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=32.63 E-value=1.9e+02 Score=21.11 Aligned_cols=54 Identities=13% Similarity=0.023 Sum_probs=26.1
Q ss_pred CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030228 57 PLSLRELQYLEQQIDTSLKRLRNRKNQLTHESISDLQKRERALQDQNNMLAKKL 110 (181)
Q Consensus 57 ~Ls~kELq~LE~qLe~aL~~IRsrK~qlm~e~I~~LqkKe~~L~EeN~~L~~kl 110 (181)
++|++|+..+=...+.+-..+-..-..++.+++..+.++.+.|+..-..|...+
T Consensus 56 G~sl~eI~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~ 109 (116)
T cd04769 56 GFTLAELKAIFAGHEGRAVLPWPHLQQALEDKKQEIRAQITELQQLLARLDAFE 109 (116)
T ss_pred CCCHHHHHHHHhccccCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 388888887644433221011111124455555555555555555555554444
No 74
>PHA02109 hypothetical protein
Probab=32.58 E-value=1.8e+02 Score=24.05 Aligned_cols=29 Identities=24% Similarity=0.509 Sum_probs=19.6
Q ss_pred HHHHhhhhcCCCCCCCC--HHHHHHHHHHHH
Q 030228 43 LEKNIRNFMGGDLEPLS--LRELQYLEQQID 71 (181)
Q Consensus 43 Lq~~~R~l~GEdL~~Ls--~kELq~LE~qLe 71 (181)
.-...|...||.|++|+ ++++-.||-.||
T Consensus 173 ID~~~~~~t~~~L~~~~~~L~~I~~L~~ki~ 203 (233)
T PHA02109 173 IDQVERSHTGENLEGLTDKLKQISELTIKLE 203 (233)
T ss_pred HHHHHhccchhhhhhhhHHHHhhHHHHHHHH
Confidence 33344777899999987 666666665554
No 75
>cd01109 HTH_YyaN Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB. Putative helix-turn-helix (HTH) MerR-like transcription regulators of Bacillus subtilis, YyaN and YraB, and related proteins; N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=32.56 E-value=2e+02 Score=20.91 Aligned_cols=53 Identities=15% Similarity=0.229 Sum_probs=28.4
Q ss_pred CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030228 57 PLSLRELQYLEQQIDTSLKRLRNRKNQLTHESISDLQKRERALQDQNNMLAKKL 110 (181)
Q Consensus 57 ~Ls~kELq~LE~qLe~aL~~IRsrK~qlm~e~I~~LqkKe~~L~EeN~~L~~kl 110 (181)
++|++|+..+=.....+-..+. .-..++.+++..+..+...|...-..|..++
T Consensus 57 G~sL~eI~~~l~~~~~~~~~~~-~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~ 109 (113)
T cd01109 57 GMSIKDIKEYAELRREGDSTIP-ERLELLEEHREELEEQIAELQETLAYLDYKI 109 (113)
T ss_pred CCCHHHHHHHHHHHccCCccHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3899998875332221111121 2235566666666666666665555555544
No 76
>KOG0930 consensus Guanine nucleotide exchange factor Cytohesin, contains PH and Sec7 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.44 E-value=93 Score=27.71 Aligned_cols=42 Identities=26% Similarity=0.353 Sum_probs=29.7
Q ss_pred CCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030228 56 EPLSLRELQYLEQQIDTSLKRLRNRKNQLTHESISDLQKRERALQDQNNML 106 (181)
Q Consensus 56 ~~Ls~kELq~LE~qLe~aL~~IRsrK~qlm~e~I~~LqkKe~~L~EeN~~L 106 (181)
.+||..|-..| -+||.||.||+ ++|..|+.......++-..|
T Consensus 9 ~~Ls~~E~~eL--------~~ir~rk~qL~-deIq~Lk~Ei~ev~~eid~~ 50 (395)
T KOG0930|consen 9 NDLSEEERMEL--------ENIRRRKQELL-DEIQRLKDEIAEVMEEIDNL 50 (395)
T ss_pred CCCCHHHHHhH--------HHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhh
Confidence 45777665554 57999999886 67888888777666555443
No 77
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=32.30 E-value=1.4e+02 Score=22.17 Aligned_cols=28 Identities=18% Similarity=0.249 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030228 84 LTHESISDLQKRERALQDQNNMLAKKLK 111 (181)
Q Consensus 84 lm~e~I~~LqkKe~~L~EeN~~L~~kl~ 111 (181)
-..++|..|+++...|..+|..|++.+.
T Consensus 75 ~~~~ei~~L~~el~~L~~E~diLKKa~~ 102 (121)
T PRK09413 75 AAMKQIKELQRLLGKKTMENELLKEAVE 102 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788899998899999998887663
No 78
>PF15243 ANAPC15: Anaphase-promoting complex subunit 15
Probab=31.43 E-value=59 Score=23.77 Aligned_cols=22 Identities=36% Similarity=0.413 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHhHHHHHHHH
Q 030228 61 RELQYLEQQIDTSLKRLRNRKN 82 (181)
Q Consensus 61 kELq~LE~qLe~aL~~IRsrK~ 82 (181)
.||+++|++.+..|..|+.+=+
T Consensus 28 ~EL~~~Eq~~q~Wl~sI~ekd~ 49 (92)
T PF15243_consen 28 TELQQQEQQHQAWLQSIAEKDN 49 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc
Confidence 4788999999999988876543
No 79
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=31.28 E-value=2.7e+02 Score=22.10 Aligned_cols=54 Identities=17% Similarity=0.310 Sum_probs=33.6
Q ss_pred CCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030228 58 LSLRELQYLEQQIDTSLKRLRNRKNQLTHESISDLQKRERALQDQNNMLAKKLK 111 (181)
Q Consensus 58 Ls~kELq~LE~qLe~aL~~IRsrK~qlm~e~I~~LqkKe~~L~EeN~~L~~kl~ 111 (181)
.+-.|+.+++.++..++..+|+--.-+-..++..++.....|..+-..|+.++.
T Consensus 44 vtk~d~e~~~~~~~a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie~l~~~L~ 97 (177)
T PF07798_consen 44 VTKSDLENQEYLFKAAIAELRSELQNSRKSEFAELRSENEKLQREIEKLRQELR 97 (177)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888888888888655444444555555554445444444444443
No 80
>PF09798 LCD1: DNA damage checkpoint protein; InterPro: IPR018622 This is a family of proteins which regulate checkpoint kinases. In Schizosaccharomyces pombe (Fission yeast) this protein is called Rad26 and in Saccharomyces cerevisiae (Baker's yeast) it is called LCD1 [].
Probab=31.08 E-value=2.8e+02 Score=27.26 Aligned_cols=52 Identities=21% Similarity=0.425 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030228 62 ELQYLEQQIDTSLKRLRNRKNQL---THESISDLQKRERALQDQNNMLAKKLKEK 113 (181)
Q Consensus 62 ELq~LE~qLe~aL~~IRsrK~ql---m~e~I~~LqkKe~~L~EeN~~L~~kl~e~ 113 (181)
.|..|+++-+.=+...+.+++++ ..++++.|+.-...|+++++.|.-.+...
T Consensus 5 kL~~Lq~ek~~E~~~l~~~~~~lk~~~~~el~~Lk~~vqkLEDEKKFL~nE~r~~ 59 (654)
T PF09798_consen 5 KLELLQQEKQKERQALKSSVEELKESHEEELNKLKSEVQKLEDEKKFLNNELRSL 59 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58888888888888888877764 35788888889999999999998877554
No 81
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=30.94 E-value=1.6e+02 Score=20.68 Aligned_cols=32 Identities=19% Similarity=0.249 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030228 82 NQLTHESISDLQKRERALQDQNNMLAKKLKEK 113 (181)
Q Consensus 82 ~qlm~e~I~~LqkKe~~L~EeN~~L~~kl~e~ 113 (181)
...+..+++.+++....|.++|..|.-++...
T Consensus 37 ~~~~~~~l~~l~~~~~~l~~e~~~L~lE~~~l 68 (97)
T PF04999_consen 37 SRQLFYELQQLEKEIDQLQEENERLRLEIATL 68 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44556679999999999999999999887654
No 82
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=30.77 E-value=1.4e+02 Score=22.61 Aligned_cols=28 Identities=14% Similarity=0.230 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030228 85 THESISDLQKRERALQDQNNMLAKKLKE 112 (181)
Q Consensus 85 m~e~I~~LqkKe~~L~EeN~~L~~kl~e 112 (181)
+++++..|......+..+-..|++.+.+
T Consensus 6 iFd~v~~le~~l~~l~~el~~lK~~l~~ 33 (114)
T COG4467 6 IFDQVDNLEEQLGVLLAELGGLKQHLGS 33 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555554443
No 83
>cd04787 HTH_HMRTR_unk Helix-Turn-Helix DNA binding domain of putative Heavy Metal Resistance transcription regulators. Putative helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR), unknown subgroup. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules, such as, metal ions, drugs, and organic substrates. This subgroup lacks one of the c
Probab=30.67 E-value=2.3e+02 Score=21.25 Aligned_cols=52 Identities=12% Similarity=0.262 Sum_probs=28.9
Q ss_pred CCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030228 58 LSLRELQYLEQQIDTSLKRLRNRKNQLTHESISDLQKRERALQDQNNMLAKKL 110 (181)
Q Consensus 58 Ls~kELq~LE~qLe~aL~~IRsrK~qlm~e~I~~LqkKe~~L~EeN~~L~~kl 110 (181)
+|++|+..+=...+.+-... ..-..++.+++..+..+...|...-..|..++
T Consensus 58 ~sL~eI~~~l~~~~~~~~~~-~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~ 109 (133)
T cd04787 58 FSLKDIKEILSHADQGESPC-PMVRRLIEQRLAETERRIKELLKLRDRMQQAV 109 (133)
T ss_pred CCHHHHHHHHhhhccCCCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999887644322211111 11235666777777777666665555555544
No 84
>TIGR01950 SoxR redox-sensitive transcriptional activator SoxR. SoxR is a MerR-family homodimeric transcription factor with a 2Fe-2S cluster in each monomer. The motif CIGCGCxxxxxC is conserved. Oxidation of the iron-sulfur cluster activates SoxR. The physiological role in E. coli is response to oxidative stress. It is activated by superoxide, singlet oxygen, nitric oxide (NO), and hydrogen peroxide. In E. coli, SoxR increases expression of transcription factor SoxS; different downstream targets may exist in other species.
Probab=29.94 E-value=1.7e+02 Score=22.55 Aligned_cols=54 Identities=11% Similarity=0.089 Sum_probs=29.0
Q ss_pred CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030228 57 PLSLRELQYLEQQIDTSLKRLRNRKNQLTHESISDLQKRERALQDQNNMLAKKL 110 (181)
Q Consensus 57 ~Ls~kELq~LE~qLe~aL~~IRsrK~qlm~e~I~~LqkKe~~L~EeN~~L~~kl 110 (181)
++|++|+..+=..+...-...-..-..++.+.+..+..+...|...-..|...+
T Consensus 57 G~sL~eI~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~ki~~L~~~~~~L~~~~ 110 (142)
T TIGR01950 57 GIPLATIGEALAVLPEGRTPTADDWARLSSQWREELDERIDQLNALRDQLDGCI 110 (142)
T ss_pred CCCHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 399999888765543211111112223555566666666666655555555444
No 85
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=29.49 E-value=1.6e+02 Score=21.72 Aligned_cols=28 Identities=25% Similarity=0.442 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030228 84 LTHESISDLQKRERALQDQNNMLAKKLK 111 (181)
Q Consensus 84 lm~e~I~~LqkKe~~L~EeN~~L~~kl~ 111 (181)
+..++-.-|+||...+.++|..|...+.
T Consensus 12 FvEEEa~LlRRkl~ele~eN~~l~~EL~ 39 (96)
T PF11365_consen 12 FVEEEAELLRRKLSELEDENKQLTEELN 39 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555566666666666666665553
No 86
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=29.44 E-value=1.5e+02 Score=19.04 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 030228 80 RKNQLTHESISDLQKRERALQDQN 103 (181)
Q Consensus 80 rK~qlm~e~I~~LqkKe~~L~EeN 103 (181)
.|.+=+-++|.+|++|...|..+.
T Consensus 19 qkiedid~qIaeLe~KR~~Lv~qH 42 (46)
T PF08946_consen 19 QKIEDIDEQIAELEAKRQRLVDQH 42 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HhHHHHHHHHHHHHHHHHHHHHhC
Confidence 344455678888888877776553
No 87
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=28.64 E-value=2.8e+02 Score=21.49 Aligned_cols=72 Identities=22% Similarity=0.326 Sum_probs=45.7
Q ss_pred HHHHHHHHHhhhhcCCCCCCC--------CHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030228 38 SRIEVLEKNIRNFMGGDLEPL--------SLRELQYLEQQIDTSLKRLRNRKNQLTHESISDLQKRERALQDQNNMLAKK 109 (181)
Q Consensus 38 ~~ie~Lq~~~R~l~GEdL~~L--------s~kELq~LE~qLe~aL~~IRsrK~qlm~e~I~~LqkKe~~L~EeN~~L~~k 109 (181)
.++..|-.-.|.|.+-..++- .+.|++.+=.-.|..+++..+. .+.=..+|..|+++...+.-.|..|.++
T Consensus 52 sEL~~Ls~LK~~y~~~~~~~~~~~~~l~a~~~e~qsli~~yE~~~~kLe~e-~~~Kdsei~~Lr~~L~~~~~~n~~Lekr 130 (131)
T PF04859_consen 52 SELRRLSELKRRYRKKQSDPSPQVARLAAEIQEQQSLIKTYEIVVKKLEAE-LRAKDSEIDRLREKLDELNRANKSLEKR 130 (131)
T ss_pred HHHHHHHHHHHHHHcCCCCCCccccccccchHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 344555555555555544433 4678888877777777654322 1122357788899988888888888776
Q ss_pred H
Q 030228 110 L 110 (181)
Q Consensus 110 l 110 (181)
|
T Consensus 131 l 131 (131)
T PF04859_consen 131 L 131 (131)
T ss_pred C
Confidence 4
No 88
>smart00338 BRLZ basic region leucin zipper.
Probab=27.42 E-value=1.8e+02 Score=18.97 Aligned_cols=28 Identities=18% Similarity=0.181 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030228 83 QLTHESISDLQKRERALQDQNNMLAKKL 110 (181)
Q Consensus 83 qlm~e~I~~LqkKe~~L~EeN~~L~~kl 110 (181)
+.|..+...|+.+...|..++..|...+
T Consensus 36 ~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 36 EQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555666666666666666665543
No 89
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=27.04 E-value=3e+02 Score=21.31 Aligned_cols=21 Identities=14% Similarity=0.436 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 030228 91 DLQKRERALQDQNNMLAKKLK 111 (181)
Q Consensus 91 ~LqkKe~~L~EeN~~L~~kl~ 111 (181)
.+-++.+.|..+...+..++.
T Consensus 112 ~~eRkv~~le~~~~~~E~k~e 132 (143)
T PF12718_consen 112 HFERKVKALEQERDQWEEKYE 132 (143)
T ss_pred HHHHHHHHHHhhHHHHHHHHH
Confidence 333344444444444444433
No 90
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=26.49 E-value=6.9e+02 Score=25.31 Aligned_cols=84 Identities=26% Similarity=0.328 Sum_probs=49.8
Q ss_pred hhhhhhHHHHHHHHHHHHHHhhhhc-CC-CC----CCCCHHHHHH----HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 030228 27 GCWSLEYPNLKSRIEVLEKNIRNFM-GG-DL----EPLSLRELQY----LEQQIDTSLKRLRNRKNQLTHESISDLQKRE 96 (181)
Q Consensus 27 ~~~~~E~~kLk~~ie~Lq~~~R~l~-GE-dL----~~Ls~kELq~----LE~qLe~aL~~IRsrK~qlm~e~I~~LqkKe 96 (181)
+-.+.|.+.|+.++-.|...+|--- .+ .- -+|-+--||. |+.||..+++.. +++...-++|-|-.
T Consensus 390 QplrsENaqLrRrLrilnqqlreqe~~~k~~~~~~~n~El~sLqSlN~~Lq~ql~es~k~~-----e~lq~kneellk~~ 464 (861)
T PF15254_consen 390 QPLRSENAQLRRRLRILNQQLREQEKAEKTSGSQDCNLELFSLQSLNMSLQNQLQESLKSQ-----ELLQSKNEELLKVI 464 (861)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHhhcccCCCcccchhhHHHHHHHHHHHHHHHHHHHhH-----HHHHHhHHHHHHHH
Confidence 4566777778887777766665411 11 11 1233445554 455665555432 34455556666666
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 030228 97 RALQDQNNMLAKKLKEKER 115 (181)
Q Consensus 97 ~~L~EeN~~L~~kl~e~~~ 115 (181)
..+.++|+.|.+.+.+++.
T Consensus 465 e~q~~Enk~~~~~~~ekd~ 483 (861)
T PF15254_consen 465 ENQKEENKRLRKMFQEKDQ 483 (861)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7788888888888777654
No 91
>PF08112 ATP-synt_E_2: ATP synthase epsilon subunit; InterPro: IPR012508 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. A-ATPases (or A1A0-ATPase) (3.6.3.14 from EC) are found exclusively in Archaea and display a close resemblance in structure and subunit composition with V-ATPases, although their function in both ATP synthesis and ATP hydrolysis is closer to that of F-ATPases []. A-ATPases are composed of two linked complexes: the A1 complex consisting of seven subunits contains the catalytic core that synthesizes/hydrolyses ATP, while the A0 complex consisting of at least two subunits forms the membrane-spanning pore []. The rotary motor in A-ATPases is composed of only two subunits, the stator subunit I and the rotor subunit C []. A-ATPases may have arisen as an adaptation to the different cellular needs and the more extreme environmental conditions faced by Archaeal species. The epsilon subunit is the smallest (7 kDa) of those found in the A1 complex. Unlike the A, B and C subunits, the epsilon subunit does not have a homologous counterpart in F- or V-ATPases []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0015986 ATP synthesis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain
Probab=26.19 E-value=1.8e+02 Score=19.29 Aligned_cols=48 Identities=23% Similarity=0.325 Sum_probs=29.1
Q ss_pred HHHHHHhhhhhhhhhhcccchhhhhhhhhhHHH-HHHHHHHHHHHhhhhcC
Q 030228 3 RILERYERNAYVEQQLVTNDAELQGCWSLEYPN-LKSRIEVLEKNIRNFMG 52 (181)
Q Consensus 3 ~iLERY~~~s~~~~~~~~~~~~~~~~~~~E~~k-Lk~~ie~Lq~~~R~l~G 52 (181)
.+|+.|-..-.+ .+..-..+.....+.||.+ |+.+.+.|+...|+.+-
T Consensus 7 ~~~d~yI~~Lk~--kLd~Kk~Eil~~ln~EY~kiLk~r~~~lEevKrk~LK 55 (56)
T PF08112_consen 7 STIDKYISILKS--KLDEKKSEILSNLNMEYEKILKQRRKELEEVKRKALK 55 (56)
T ss_pred hhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 578888644322 1111123334567788877 57788888888777653
No 92
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=25.78 E-value=3.1e+02 Score=22.28 Aligned_cols=28 Identities=32% Similarity=0.386 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030228 86 HESISDLQKRERALQDQNNMLAKKLKEK 113 (181)
Q Consensus 86 ~e~I~~LqkKe~~L~EeN~~L~~kl~e~ 113 (181)
.++|..|+.+...|..++..|..+..-.
T Consensus 110 ~~e~~kl~~~~e~L~~e~~~L~~~~~~~ 137 (170)
T PRK13923 110 SEQIGKLQEEEEKLSWENQTLKQELAIT 137 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666777777777777777777765443
No 93
>PHA01750 hypothetical protein
Probab=25.57 E-value=2.4e+02 Score=19.62 Aligned_cols=22 Identities=23% Similarity=0.398 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 030228 88 SISDLQKRERALQDQNNMLAKK 109 (181)
Q Consensus 88 ~I~~LqkKe~~L~EeN~~L~~k 109 (181)
+|++++.|...++++-..+++|
T Consensus 50 ei~~~kikqDnl~~qv~eik~k 71 (75)
T PHA01750 50 EIEELKIKQDELSRQVEEIKRK 71 (75)
T ss_pred HHHHHHHhHHHHHHHHHHHHHh
Confidence 3333333333333333333333
No 94
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=24.94 E-value=3.4e+02 Score=21.29 Aligned_cols=53 Identities=23% Similarity=0.310 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
Q 030228 60 LRELQYLEQQIDTSLKRLRNRKNQLTHESISDLQKRERALQDQNN----MLAKKLKEKE 114 (181)
Q Consensus 60 ~kELq~LE~qLe~aL~~IRsrK~qlm~e~I~~LqkKe~~L~EeN~----~L~~kl~e~~ 114 (181)
..++..|+.||..+=+.|..-|.. ..-+++|+++...|+..|. ....++....
T Consensus 26 ~~e~~~~k~ql~~~d~~i~~Lk~~--~~d~eeLk~~i~~lq~~~~~~~~~~e~~l~~~~ 82 (155)
T PF06810_consen 26 KEERDNLKTQLKEADKQIKDLKKS--AKDNEELKKQIEELQAKNKTAKEEYEAKLAQMK 82 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc--cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347888888888888877776663 2346777777777777777 4455554443
No 95
>PF06937 EURL: EURL protein; InterPro: IPR009704 This family consists of several animal EURL proteins. EURL is preferentially expressed in chick retinal precursor cells as well as in the anterior epithelial cells of the lens at early stages of development. EURL transcripts are found primarily in the peripheral dorsal retina, i.e., the most undifferentiated part of the dorsal retina. EURL transcripts are also detected in the lens at stage 18 and remain abundant in the proliferating epithelial cells of the lens until at least day 11. The distribution pattern of EURL in the developing retina and lens suggest a role before the events leading to cell determination and differentiation [].
Probab=24.89 E-value=98 Score=27.08 Aligned_cols=36 Identities=17% Similarity=0.409 Sum_probs=29.5
Q ss_pred HHHHHhhhhcCCCCCCCCHHHHHHHHHHHHHHhHHH
Q 030228 42 VLEKNIRNFMGGDLEPLSLRELQYLEQQIDTSLKRL 77 (181)
Q Consensus 42 ~Lq~~~R~l~GEdL~~Ls~kELq~LE~qLe~aL~~I 77 (181)
.+++.++++.=|+|.+|++.||.+|=.+|-..+..|
T Consensus 203 ~~~~r~~~~SrEeL~~Mt~~EL~qL~~~L~~qIq~v 238 (285)
T PF06937_consen 203 SLQRRHPHYSREELNSMTLDELKQLNEKLLQQIQDV 238 (285)
T ss_pred cccccccccCHHHhhhCCHHHHHHHHHHHHHHHHHH
Confidence 457778999999999999999999988876555444
No 96
>TIGR00012 L29 ribosomal protein L29. called L29 in prokaryotic (50S) large subunits and L35 in eukaryotic (60S) large subunits.
Probab=24.84 E-value=1.3e+02 Score=19.43 Aligned_cols=28 Identities=29% Similarity=0.275 Sum_probs=21.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHhHHHHHHH
Q 030228 54 DLEPLSLRELQYLEQQIDTSLKRLRNRK 81 (181)
Q Consensus 54 dL~~Ls~kELq~LE~qLe~aL~~IRsrK 81 (181)
||-.+|.+||...-..+...|-..|-.+
T Consensus 1 elr~~s~~EL~~~l~~lr~eLf~Lr~~~ 28 (55)
T TIGR00012 1 ELREKSKEELAKKLDELKKELFELRFQK 28 (55)
T ss_pred CHhhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888888888888888777443
No 97
>PRK14127 cell division protein GpsB; Provisional
Probab=24.20 E-value=2.6e+02 Score=20.95 Aligned_cols=28 Identities=25% Similarity=0.334 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030228 88 SISDLQKRERALQDQNNMLAKKLKEKER 115 (181)
Q Consensus 88 ~I~~LqkKe~~L~EeN~~L~~kl~e~~~ 115 (181)
.++.+.+....|.++|..|+.++.+...
T Consensus 38 dye~l~~e~~~Lk~e~~~l~~~l~e~~~ 65 (109)
T PRK14127 38 DYEAFQKEIEELQQENARLKAQVDELTK 65 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666667788888888888876654
No 98
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=23.39 E-value=6.6e+02 Score=24.05 Aligned_cols=22 Identities=18% Similarity=0.305 Sum_probs=11.9
Q ss_pred hhHHHHHHHHHHHHHHhhhhcC
Q 030228 31 LEYPNLKSRIEVLEKNIRNFMG 52 (181)
Q Consensus 31 ~E~~kLk~~ie~Lq~~~R~l~G 52 (181)
.++..+..+++.+.+.++..-.
T Consensus 398 ~~~~~~e~el~~l~~~l~~~~~ 419 (650)
T TIGR03185 398 KELRELEEELAEVDKKISTIPS 419 (650)
T ss_pred HHHHHHHHHHHHHHHHHhcCCC
Confidence 3344555555666655555544
No 99
>PF01763 Herpes_UL6: Herpesvirus UL6 like; InterPro: IPR002660 This family consists of various proteins from the Herpesviridae that are similar to Human herpesvirus 1 (HHV-1) UL6 virion protein. UL6 is essential for cleavage and packaging of the viral genome [].; GO: 0006323 DNA packaging
Probab=23.30 E-value=3.4e+02 Score=26.16 Aligned_cols=48 Identities=25% Similarity=0.357 Sum_probs=38.8
Q ss_pred HHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 030228 71 DTSLKR-LRNRKNQLTHESISDLQKRERALQDQNNMLAKKLKEKERTLT 118 (181)
Q Consensus 71 e~aL~~-IRsrK~qlm~e~I~~LqkKe~~L~EeN~~L~~kl~e~~~~~~ 118 (181)
+.+++. |...=+..|.++|.++-+-...|.++|..+.+|+.+.+....
T Consensus 353 ~~~~r~~v~nsI~kcLe~qIn~qf~tIe~Lk~~n~~~~~kl~~~e~~L~ 401 (557)
T PF01763_consen 353 QQAFRDSVSNSINKCLEGQINNQFDTIEDLKEENQDLEKKLRELESELS 401 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344443 555557788999999999999999999999999999887765
No 100
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=23.15 E-value=73 Score=30.06 Aligned_cols=29 Identities=24% Similarity=0.418 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030228 87 ESISDLQKRERALQDQNNMLAKKLKEKER 115 (181)
Q Consensus 87 e~I~~LqkKe~~L~EeN~~L~~kl~e~~~ 115 (181)
++|++|+++...|+++-..|.++|...++
T Consensus 31 qkie~L~kql~~Lk~q~~~l~~~v~k~e~ 59 (489)
T PF11853_consen 31 QKIEALKKQLEELKAQQDDLNDRVDKVEK 59 (489)
T ss_pred HHHHHHHHHHHHHHHhhcccccccchhhH
Confidence 38899999988888888888888866654
No 101
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=23.14 E-value=5.1e+02 Score=22.67 Aligned_cols=68 Identities=25% Similarity=0.351 Sum_probs=36.4
Q ss_pred hhHHHHHHHHHHHHHHhhhhcCCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030228 31 LEYPNLKSRIEVLEKNIRNFMGGDLEPLSLRELQYLEQQIDTSLKRLRNRKNQLTHESISDLQKRERALQDQNNMLAKKL 110 (181)
Q Consensus 31 ~E~~kLk~~ie~Lq~~~R~l~GEdL~~Ls~kELq~LE~qLe~aL~~IRsrK~qlm~e~I~~LqkKe~~L~EeN~~L~~kl 110 (181)
.++..+..+++.|+.....+ .+||..||+.-+.....++.-+ .+...+.+.|.....+.+.+...+
T Consensus 43 ~~~~~~~~el~~le~Ee~~l---------~~eL~~LE~e~~~l~~el~~le-----~e~~~l~~eE~~~~~~~n~~~~~l 108 (314)
T PF04111_consen 43 EDIEELEEELEKLEQEEEEL---------LQELEELEKEREELDQELEELE-----EELEELDEEEEEYWREYNELQLEL 108 (314)
T ss_dssp H--HHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555444443 3567777776666666655533 344555666655555666555555
Q ss_pred HH
Q 030228 111 KE 112 (181)
Q Consensus 111 ~e 112 (181)
.+
T Consensus 109 ~~ 110 (314)
T PF04111_consen 109 IE 110 (314)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 102
>cd01106 HTH_TipAL-Mta Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA. Helix-turn-helix (HTH) TipAL, Mta, and SkgA transcription regulators, and related proteins, N-terminal domain. TipAL regulates resistance to and activation by numerous cyclic thiopeptide antibiotics, such as thiostrepton. Mta is a global transcriptional regulator; the N-terminal DNA-binding domain of Mta interacts directly with the promoters of mta, bmr, blt, and ydfK, and induces transcription of these multidrug-efflux transport genes. SkgA has been shown to control stationary-phase expression of catalase-peroxidase in Caulobacter crescentus. These proteins are comprised of distinct domains that harbor an N-terminal active (DNA-binding) site and a regulatory (effector-binding) site. The conserved N-terminal domain of these transcription regulators contains winged HTH motifs that mediate DNA binding. These proteins share the N-terminal DNA binding domain with other transcrip
Probab=23.13 E-value=2.8e+02 Score=19.67 Aligned_cols=15 Identities=27% Similarity=0.357 Sum_probs=11.4
Q ss_pred CCCHHHHHHHHHHHH
Q 030228 57 PLSLRELQYLEQQID 71 (181)
Q Consensus 57 ~Ls~kELq~LE~qLe 71 (181)
+++++++..+=....
T Consensus 57 g~~l~~i~~~~~~~~ 71 (103)
T cd01106 57 GFSLKEIKELLKDPS 71 (103)
T ss_pred CCCHHHHHHHHHcCc
Confidence 599999988866553
No 103
>TIGR02043 ZntR Zn(II)-responsive transcriptional regulator. This model represents the zinc and cadmium (II) responsive transcriptional activator of the gamma proteobacterial zinc efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-Cys-X(8-9)-Cys, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=22.82 E-value=3.3e+02 Score=20.40 Aligned_cols=53 Identities=11% Similarity=0.076 Sum_probs=29.4
Q ss_pred CCCHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030228 57 PLSLRELQYLEQQIDT-SLKRLRNRKNQLTHESISDLQKRERALQDQNNMLAKKL 110 (181)
Q Consensus 57 ~Ls~kELq~LE~qLe~-aL~~IRsrK~qlm~e~I~~LqkKe~~L~EeN~~L~~kl 110 (181)
++|++|+..+=..... +-... ..-..++.+++..++++...|...-..|...+
T Consensus 58 G~sl~eI~~~l~~~~~~~~~~~-~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~ 111 (131)
T TIGR02043 58 GFTLDEIKELLSIKLDATEHSC-AEVKAIVDAKLELVDEKINELTKIRRSLKKLS 111 (131)
T ss_pred CCCHHHHHHHHHhhccCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4899988886553211 00001 12235667777777777766655555554444
No 104
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=22.76 E-value=5.8e+02 Score=23.18 Aligned_cols=89 Identities=24% Similarity=0.386 Sum_probs=47.4
Q ss_pred hHHHHHHhhhhhhhhhhcccchhhhhhhhhhHHHHHHHHHHHHHHhhhhcCCCCCCCCHHHHHHHHHHHHHHhHHHHHHH
Q 030228 2 ERILERYERNAYVEQQLVTNDAELQGCWSLEYPNLKSRIEVLEKNIRNFMGGDLEPLSLRELQYLEQQIDTSLKRLRNRK 81 (181)
Q Consensus 2 ~~iLERY~~~s~~~~~~~~~~~~~~~~~~~E~~kLk~~ie~Lq~~~R~l~GEdL~~Ls~kELq~LE~qLe~aL~~IRsrK 81 (181)
..+.+||+....- +..++.- ....+|.++-++...|+...- .++++..++.+|+.+-.-+...+
T Consensus 10 ~~~~~r~~el~~~---L~~p~v~---~d~~~~~~lske~a~l~~iv~----------~~~~~~~~~~~l~~a~~~l~~~~ 73 (363)
T COG0216 10 ESLLERYEELEAL---LSDPEVI---SDPDEYRKLSKEYAELEPIVE----------KYREYKKAQEDLEDAKEMLAEEK 73 (363)
T ss_pred HHHHHHHHHHHHH---hcCcccc---cCHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHhccC
Confidence 5688888865422 2222211 112445555545444443332 24566677777766554444333
Q ss_pred H----HHHHHHHHHHHHHHHHHHHHHHHH
Q 030228 82 N----QLTHESISDLQKRERALQDQNNML 106 (181)
Q Consensus 82 ~----qlm~e~I~~LqkKe~~L~EeN~~L 106 (181)
+ .+..++|.+++.+...|.++-+.|
T Consensus 74 D~em~ema~~Ei~~~~~~~~~le~~L~~l 102 (363)
T COG0216 74 DPEMREMAEEEIKELEAKIEELEEELKIL 102 (363)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3 455667777777766666665544
No 105
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=22.70 E-value=3.6e+02 Score=20.72 Aligned_cols=64 Identities=17% Similarity=0.301 Sum_probs=38.0
Q ss_pred HHHHHHhhhhcCCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030228 41 EVLEKNIRNFMGGDLEPLSLRELQYLEQQIDTSLKRLRNRKNQLT--HESISDLQKRERALQDQNNMLAKKLKEK 113 (181)
Q Consensus 41 e~Lq~~~R~l~GEdL~~Ls~kELq~LE~qLe~aL~~IRsrK~qlm--~e~I~~LqkKe~~L~EeN~~L~~kl~e~ 113 (181)
+.|....|||. .-|+.|..+||.....+...|+++. .+.++.++.....++..=..|..||.+.
T Consensus 57 ~~l~~tKkhLs---------qRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~i 122 (126)
T PF07889_consen 57 ESLSSTKKHLS---------QRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEI 122 (126)
T ss_pred HHHHHHHHHHH---------HHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666667766 4566666777766666666666543 3445555555555555555555555444
No 106
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=22.69 E-value=3.7e+02 Score=20.90 Aligned_cols=60 Identities=23% Similarity=0.322 Sum_probs=29.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhHHHHHHHHH--HHHHHH---------HHHHHHHHHHHHHHHHHHHHHHH
Q 030228 53 GDLEPLSLRELQYLEQQIDTSLKRLRNRKNQ--LTHESI---------SDLQKRERALQDQNNMLAKKLKE 112 (181)
Q Consensus 53 EdL~~Ls~kELq~LE~qLe~aL~~IRsrK~q--lm~e~I---------~~LqkKe~~L~EeN~~L~~kl~e 112 (181)
++++.++-.||..|..++..--..++.-+.+ -+..++ ++|......|..++..|..++..
T Consensus 64 ~~~~~~s~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~ 134 (169)
T PF07106_consen 64 DELEVPSPEELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEK 134 (169)
T ss_pred cccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556667777776665543333323222222 111222 34455555566666666666544
No 107
>COG5415 Predicted integral membrane metal-binding protein [General function prediction only]
Probab=21.97 E-value=1.4e+02 Score=25.30 Aligned_cols=26 Identities=35% Similarity=0.427 Sum_probs=18.7
Q ss_pred HHHHHHHHHH---HHHhHHHHHHHHHHHH
Q 030228 61 RELQYLEQQI---DTSLKRLRNRKNQLTH 86 (181)
Q Consensus 61 kELq~LE~qL---e~aL~~IRsrK~qlm~ 86 (181)
.||.+||.|| +.+++++++.+.++..
T Consensus 15 ~~L~rle~qi~q~~~~~~~~qs~l~~~~~ 43 (251)
T COG5415 15 ADLSRLESQIHQLDVALKKSQSILSQWQS 43 (251)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677888655 5578888888887653
No 108
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=21.90 E-value=2e+02 Score=23.85 Aligned_cols=27 Identities=26% Similarity=0.443 Sum_probs=13.2
Q ss_pred HHHHHHHHhHHHHHHH--HHHHHHHHHHH
Q 030228 66 LEQQIDTSLKRLRNRK--NQLTHESISDL 92 (181)
Q Consensus 66 LE~qLe~aL~~IRsrK--~qlm~e~I~~L 92 (181)
.-.+|...|.-||.=| +|.+.+.-.+|
T Consensus 46 vNrrlQ~hl~EIR~LKe~NqkLqedNqEL 74 (195)
T PF10226_consen 46 VNRRLQQHLNEIRGLKEVNQKLQEDNQEL 74 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555 33444444433
No 109
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=21.83 E-value=3.2e+02 Score=19.78 Aligned_cols=44 Identities=25% Similarity=0.414 Sum_probs=23.6
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030228 67 EQQIDTSLKRLRNRKNQLTHESISDLQKRERALQDQNNMLAKKLK 111 (181)
Q Consensus 67 E~qLe~aL~~IRsrK~qlm~e~I~~LqkKe~~L~EeN~~L~~kl~ 111 (181)
|..++.|...+ .+|-..+..+++.+.+....+..+-..+...+.
T Consensus 82 e~~~~eA~~~l-~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~ 125 (129)
T cd00890 82 EKSLEEAIEFL-KKRLETLEKQIEKLEKQLEKLQDQITELQEELQ 125 (129)
T ss_pred EecHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555544 333445555666666666655555555555543
No 110
>cd01282 HTH_MerR-like_sg3 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 3). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=21.70 E-value=3.2e+02 Score=19.83 Aligned_cols=51 Identities=10% Similarity=0.133 Sum_probs=26.8
Q ss_pred CCHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030228 58 LSLRELQYLEQQIDTSL---KRLRNRKNQLTHESISDLQKRERALQDQNNMLAKK 109 (181)
Q Consensus 58 Ls~kELq~LE~qLe~aL---~~IRsrK~qlm~e~I~~LqkKe~~L~EeN~~L~~k 109 (181)
+|++|+..+=...+.+- ... ....+++.+++..+..+...|...-..|...
T Consensus 57 ~sl~eI~~~l~~~~~~~~~~~~~-~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~ 110 (112)
T cd01282 57 LTLEEIREFLPCLRGGEPTFRPC-PDLLAVLRRELARIDRQIADLTRSRDRLDAY 110 (112)
T ss_pred CCHHHHHHHHHHhhCCCccCCcc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888887654433221 111 1123555666666666666555555554443
No 111
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=21.70 E-value=4.6e+02 Score=21.63 Aligned_cols=23 Identities=26% Similarity=0.352 Sum_probs=13.3
Q ss_pred hhhHHHHHHHHHHHHHHhhhhcC
Q 030228 30 SLEYPNLKSRIEVLEKNIRNFMG 52 (181)
Q Consensus 30 ~~E~~kLk~~ie~Lq~~~R~l~G 52 (181)
..++..++...+.|+...-..+.
T Consensus 26 ~~~l~~~~~~~~~l~~~i~~~l~ 48 (302)
T PF10186_consen 26 RSELQQLKEENEELRRRIEEILE 48 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666665555444
No 112
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=21.69 E-value=3.6e+02 Score=24.53 Aligned_cols=51 Identities=27% Similarity=0.290 Sum_probs=0.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 030228 54 DLEPLSLRELQYLEQQIDTSLKRLRNRKNQLTHESISDLQKRERALQDQNNMLAKKLKEKERTLT 118 (181)
Q Consensus 54 dL~~Ls~kELq~LE~qLe~aL~~IRsrK~qlm~e~I~~LqkKe~~L~EeN~~L~~kl~e~~~~~~ 118 (181)
+|++.|++|+-.|-+. +.-+..++++|+.|...| +|..++..+.+.....+
T Consensus 25 ~~~~~~~~e~~aLr~E------------N~~LKkEN~~Lk~eVerL--E~e~l~s~V~E~vet~d 75 (420)
T PF07407_consen 25 ELEGVSIDENFALRME------------NHSLKKENNDLKIEVERL--ENEMLRSHVCEDVETND 75 (420)
T ss_pred cccccchhhhhhHHHH------------hHHHHHHHHHHHHHHHHH--HHHhhhhhhhhHHHHHH
No 113
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=21.58 E-value=1.3e+02 Score=18.89 Aligned_cols=32 Identities=19% Similarity=0.244 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030228 80 RKNQLTHESISDLQKRERALQDQNNMLAKKLK 111 (181)
Q Consensus 80 rK~qlm~e~I~~LqkKe~~L~EeN~~L~~kl~ 111 (181)
+.+..+.-.|.+|.++.-.|.-+|..|+..+.
T Consensus 14 K~Ns~l~~ki~~le~~~s~L~~en~~lR~~~~ 45 (46)
T PF07558_consen 14 KRNSALSIKIQELENEVSKLLNENVNLRELVL 45 (46)
T ss_dssp ----------------HHHHHHHHHHHHHHHH
T ss_pred hHhHHHHhHHHHHHhHHHHHHHHHHHHHHHhc
Confidence 45566677788888888888888888887653
No 114
>PLN02372 violaxanthin de-epoxidase
Probab=21.53 E-value=6.7e+02 Score=23.44 Aligned_cols=51 Identities=20% Similarity=0.437 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHH-----HHHHHHHH
Q 030228 33 YPNLKSRIEVLEKNIRNFMGGDLEPLSLRELQYLEQQIDTSLKRLRNRKNQLTHE-----SISDLQKR 95 (181)
Q Consensus 33 ~~kLk~~ie~Lq~~~R~l~GEdL~~Ls~kELq~LE~qLe~aL~~IRsrK~qlm~e-----~I~~LqkK 95 (181)
+++|...++..++.+ ++|..++|.+|+.-+..|+..-..++.. -+.+|++.
T Consensus 363 ~~~l~~~~e~~e~~i------------~~e~~~~~~e~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~~ 418 (455)
T PLN02372 363 LERLEKDVEEGEKTI------------VKEARQIEEELEKEVEKLGKEEESLFKRVALEEGLKELEQD 418 (455)
T ss_pred HHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666555543 5679999999999999998876655543 44455444
No 115
>cd01107 HTH_BmrR Helix-Turn-Helix DNA binding domain of the BmrR transcription regulator. Helix-turn-helix (HTH) multidrug-efflux transporter transcription regulator, BmrR and YdfL of Bacillus subtilis, and related proteins; N-terminal domain. Bmr is a membrane protein which causes the efflux of a variety of toxic substances and antibiotics. BmrR is comprised of two distinct domains that harbor a regulatory (effector-binding) site and an active (DNA-binding) site. The conserved N-terminal domain contains a winged HTH motif that mediates DNA binding, while the C-terminal domain binds coactivating, toxic compounds. BmrR shares the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=21.53 E-value=3.2e+02 Score=19.69 Aligned_cols=48 Identities=19% Similarity=0.311 Sum_probs=27.8
Q ss_pred CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030228 57 PLSLRELQYLEQQIDTSLKRLRNRKNQLTHESISDLQKRERALQDQNNMLAKKL 110 (181)
Q Consensus 57 ~Ls~kELq~LE~qLe~aL~~IRsrK~qlm~e~I~~LqkKe~~L~EeN~~L~~kl 110 (181)
++|++|+..+=..... ..-..++..++..|.++...|+..-..|..++
T Consensus 58 G~sl~~i~~l~~~~~~------~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~l 105 (108)
T cd01107 58 GFPLEEIKEILDADND------DELRKLLREKLAELEAEIEELQRILRLLEDRL 105 (108)
T ss_pred CCCHHHHHHHHhcCCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3888888876444332 33445556666666666665555555555444
No 116
>PRK09514 zntR zinc-responsive transcriptional regulator; Provisional
Probab=21.51 E-value=3.6e+02 Score=20.53 Aligned_cols=54 Identities=13% Similarity=0.137 Sum_probs=27.1
Q ss_pred CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030228 57 PLSLRELQYLEQQIDTSLKRLRNRKNQLTHESISDLQKRERALQDQNNMLAKKL 110 (181)
Q Consensus 57 ~Ls~kELq~LE~qLe~aL~~IRsrK~qlm~e~I~~LqkKe~~L~EeN~~L~~kl 110 (181)
++|++|+..+=.-....-...-..-..++.+++..+.++...|......|...+
T Consensus 58 G~sL~eI~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~ 111 (140)
T PRK09514 58 GFTLEEIRELLSIRLDPEHHTCQEVKGIVDEKLAEVEAKIAELQHMRRSLQRLN 111 (140)
T ss_pred CCCHHHHHHHHHhcccCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 488888887643211100000111234566667777766666655554444433
No 117
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=21.44 E-value=1.5e+02 Score=20.77 Aligned_cols=20 Identities=25% Similarity=0.317 Sum_probs=15.5
Q ss_pred hhhhhHHHHHHHHHHHHHHh
Q 030228 28 CWSLEYPNLKSRIEVLEKNI 47 (181)
Q Consensus 28 ~~~~E~~kLk~~ie~Lq~~~ 47 (181)
.......+|..+|+.|++..
T Consensus 46 ~L~~~a~rm~eRI~tLE~IL 65 (75)
T TIGR02976 46 ELYAKADRLEERIDTLERIL 65 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45566888999999998754
No 118
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=20.87 E-value=6.5e+02 Score=24.90 Aligned_cols=11 Identities=36% Similarity=0.299 Sum_probs=5.9
Q ss_pred CCCCCCCCHHH
Q 030228 52 GGDLEPLSLRE 62 (181)
Q Consensus 52 GEdL~~Ls~kE 62 (181)
+..+..||..|
T Consensus 624 ~~~~P~LS~AE 634 (717)
T PF10168_consen 624 NSQLPVLSEAE 634 (717)
T ss_pred hccCCCCCHHH
Confidence 44555566543
No 119
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=20.76 E-value=5.5e+02 Score=22.79 Aligned_cols=31 Identities=29% Similarity=0.413 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030228 85 THESISDLQKRERALQDQNNMLAKKLKEKER 115 (181)
Q Consensus 85 m~e~I~~LqkKe~~L~EeN~~L~~kl~e~~~ 115 (181)
+..+|-+|++|.+.+.-+|..|...+.....
T Consensus 239 LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske 269 (306)
T PF04849_consen 239 LLSQIVDLQQRCKQLAAENEELQQHLQASKE 269 (306)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3456777888888888888888888766543
No 120
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=20.69 E-value=3.3e+02 Score=20.47 Aligned_cols=46 Identities=22% Similarity=0.384 Sum_probs=30.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030228 67 EQQIDTSLKRLRNRKNQLTHESISDLQKRERALQDQNNMLAKKLKEK 113 (181)
Q Consensus 67 E~qLe~aL~~IRsrK~qlm~e~I~~LqkKe~~L~EeN~~L~~kl~e~ 113 (181)
|.-++.|+.-+..|+ ..+..++..+++....+.++-..+...+.+.
T Consensus 89 E~~~~eA~~~l~~~~-~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l 134 (140)
T PRK03947 89 EKDLDEAIEILDKRK-EELEKALEKLEEALQKLASRIAQLAQELQQL 134 (140)
T ss_pred EecHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446677777775444 4556777777777777777766666666554
No 121
>PF11629 Mst1_SARAH: C terminal SARAH domain of Mst1; InterPro: IPR024205 The SARAH (Sav/Rassf/Hpo) domain is found at the C terminus in three classes of eukaryotic tumour suppressors that give the domain its name. In the Sav (Salvador) and Hpo (Hippo) families, the SARAH domain mediates signal transduction from Hpo via the Sav scaffolding protein to the downstream component Wts (Warts); the phosphorylation of Wts by Hpo triggers cell cycle arrest and apoptosis by down-regulating cyclin E, Diap 1 and other targets []. The SARAH domain is also involved in dimerisation, as in the human Hpo orthologue, Mst1, which homodimerises via its C-terminal SARAH domain. The SARAH domain is found associated with other domains, such as protein kinase domains, WW/rsp5/WWP domain (IPR001202 from INTERPRO), C1 domain (IPR002219 from INTERPRO), LIM domain (IPR001781 from INTERPRO), or the Ras-associating (RA) domain (IPR000159 from INTERPRO).; GO: 0004674 protein serine/threonine kinase activity; PDB: 2JO8_A.
Probab=20.60 E-value=1.5e+02 Score=19.22 Aligned_cols=24 Identities=38% Similarity=0.602 Sum_probs=12.2
Q ss_pred CCCCCHHHHHH----HHHHHHHHhHHHH
Q 030228 55 LEPLSLRELQY----LEQQIDTSLKRLR 78 (181)
Q Consensus 55 L~~Ls~kELq~----LE~qLe~aL~~IR 78 (181)
|..+|+.||++ |..++|.-|..+|
T Consensus 5 Lk~ls~~eL~~rl~~LD~~ME~Eieelr 32 (49)
T PF11629_consen 5 LKFLSYEELQQRLASLDPEMEQEIEELR 32 (49)
T ss_dssp GGGS-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhCCHHHHHHHHHhCCHHHHHHHHHHH
Confidence 45677887765 3444444444444
No 122
>PF14723 SSFA2_C: Sperm-specific antigen 2 C-terminus
Probab=20.54 E-value=1.1e+02 Score=25.14 Aligned_cols=19 Identities=47% Similarity=0.616 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHhHHHHH
Q 030228 61 RELQYLEQQIDTSLKRLRN 79 (181)
Q Consensus 61 kELq~LE~qLe~aL~~IRs 79 (181)
.||+.||.||+.-+..||.
T Consensus 159 qElqELE~QL~DRl~~l~e 177 (179)
T PF14723_consen 159 QELQELEFQLEDRLLQLRE 177 (179)
T ss_pred HHHHHHHHHHHHHHHHHHc
Confidence 3778899999988877763
No 123
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=20.39 E-value=5.9e+02 Score=23.24 Aligned_cols=42 Identities=19% Similarity=0.359 Sum_probs=19.7
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030228 70 IDTSLKRLRNRKNQLTHESISDLQKRERALQDQNNMLAKKLKE 112 (181)
Q Consensus 70 Le~aL~~IRsrK~qlm~e~I~~LqkKe~~L~EeN~~L~~kl~e 112 (181)
||..+.+.+.++ +-+.-+++++++.-+.-.|++..|.+++.|
T Consensus 132 LE~li~~~~EEn-~~lqlqL~~l~~e~~Ekeeesq~LnrELaE 173 (401)
T PF06785_consen 132 LEGLIRHLREEN-QCLQLQLDALQQECGEKEEESQTLNRELAE 173 (401)
T ss_pred HHHHHHHHHHHH-HHHHHhHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 334444444333 223345555555555555555555555544
No 124
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=20.30 E-value=6.6e+02 Score=26.18 Aligned_cols=84 Identities=23% Similarity=0.323 Sum_probs=47.0
Q ss_pred hhhhhhHHHHHHHHHHHHHHhhhhcCCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030228 27 GCWSLEYPNLKSRIEVLEKNIRNFMGGDLEPLSLRELQYLEQQIDTSLKRLRNRKNQLTHESISDLQKRERALQDQNNML 106 (181)
Q Consensus 27 ~~~~~E~~kLk~~ie~Lq~~~R~l~GEdL~~Ls~kELq~LE~qLe~aL~~IRsrK~qlm~e~I~~LqkKe~~L~EeN~~L 106 (181)
+.|..+...++.+++......+.-....+..+. .+|..+.++++..+..++.++.++-++.-...+..+..+...-..+
T Consensus 659 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-~~l~~~~~e~~~~~~~~~~~~~e~~~e~~~~~~~~~~~~d~~i~~i 737 (1201)
T PF12128_consen 659 QRLKNEREQLKQEIEEAKEERKEQIEEQLNELE-EELKQLKQELEELLEELKEQLKELRNELKAQWQELEAELDEQIEQI 737 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355556666666666666666666665555443 3566666666666666666666665544444444444444444444
Q ss_pred HHHHH
Q 030228 107 AKKLK 111 (181)
Q Consensus 107 ~~kl~ 111 (181)
...+.
T Consensus 738 ~~~i~ 742 (1201)
T PF12128_consen 738 KQEIA 742 (1201)
T ss_pred HHHHH
Confidence 44443
No 125
>PRK10227 DNA-binding transcriptional regulator CueR; Provisional
Probab=20.23 E-value=4e+02 Score=20.27 Aligned_cols=53 Identities=15% Similarity=0.186 Sum_probs=28.0
Q ss_pred CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030228 57 PLSLRELQYLEQQIDTSLKRLRNRKNQLTHESISDLQKRERALQDQNNMLAKKL 110 (181)
Q Consensus 57 ~Ls~kELq~LE~qLe~aL~~IRsrK~qlm~e~I~~LqkKe~~L~EeN~~L~~kl 110 (181)
++|++|+..+=.-.+..=... ....+++.+++.++..+...|+..-..|...+
T Consensus 57 G~sl~eI~~~l~~~~~~~~~~-~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~ 109 (135)
T PRK10227 57 GFNLEESGELVNLFNDPQRHS-ADVKRRTLEKVAEIERHIEELQSMRDQLLALA 109 (135)
T ss_pred CCCHHHHHHHHHhhccCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 388888877654322110001 11124455666666666666665555555444
No 126
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=20.09 E-value=6e+02 Score=22.26 Aligned_cols=55 Identities=25% Similarity=0.338 Sum_probs=35.3
Q ss_pred CHHHHHHHHH-HHHH--HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 030228 59 SLRELQYLEQ-QIDT--SLKRLRNRKNQLTHESISDLQKRERALQDQNNMLAKKLKEKERTL 117 (181)
Q Consensus 59 s~kELq~LE~-qLe~--aL~~IRsrK~qlm~e~I~~LqkKe~~L~EeN~~L~~kl~e~~~~~ 117 (181)
-..|+..||+ .+.+ |..+-|.|| ++.|+.|.+|.+.|.-.|..|...+.......
T Consensus 200 e~qe~~kleRkrlrnreaa~Kcr~rk----LdrisrLEdkv~~lk~~n~~L~~~l~~l~~~v 257 (279)
T KOG0837|consen 200 EDQEKIKLERKRLRNREAASKCRKRK----LDRISRLEDKVKTLKIYNRDLASELSKLKEQV 257 (279)
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHH----HHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHH
Confidence 3456666665 2222 333333333 58899999999999999988877766554433
Done!