Query 030228
Match_columns 181
No_of_seqs 224 out of 1249
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 16:58:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030228.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030228hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jee_A YIIU; FTSZ, septum, coi 95.0 0.36 1.2E-05 33.6 10.0 47 58-109 3-49 (81)
2 2dgc_A Protein (GCN4); basic d 81.1 6 0.00021 25.8 6.4 39 73-115 20-58 (63)
3 1ci6_A Transcription factor AT 80.1 9.7 0.00033 24.6 7.2 41 73-117 13-53 (63)
4 2wt7_A Proto-oncogene protein 78.8 11 0.00037 24.3 7.0 41 73-117 13-53 (63)
5 2dfs_A Myosin-5A; myosin-V, in 78.5 5.2 0.00018 39.4 7.7 26 90-115 1019-1044(1080)
6 1t2k_D Cyclic-AMP-dependent tr 76.5 12 0.00042 23.8 7.0 41 73-117 12-52 (61)
7 1dip_A Delta-sleep-inducing pe 75.8 4.4 0.00015 27.6 4.5 26 83-108 18-43 (78)
8 2oqq_A Transcription factor HY 75.5 9 0.00031 23.2 5.3 26 85-110 15-40 (42)
9 2w6a_A ARF GTPase-activating p 75.3 14 0.00049 24.0 8.7 53 56-108 8-62 (63)
10 3hnw_A Uncharacterized protein 75.1 23 0.0008 26.4 11.1 22 28-49 65-86 (138)
11 1dh3_A Transcription factor CR 74.9 13 0.00045 23.4 6.5 36 75-114 14-49 (55)
12 1jnm_A Proto-oncogene C-JUN; B 71.6 17 0.00058 23.2 7.0 41 73-117 12-52 (62)
13 3hnw_A Uncharacterized protein 70.6 31 0.001 25.8 9.8 53 63-115 77-131 (138)
14 2yy0_A C-MYC-binding protein; 70.5 9.9 0.00034 24.0 5.0 29 83-111 22-50 (53)
15 1a93_B MAX protein, coiled coi 70.2 8 0.00027 22.4 4.1 26 79-104 6-31 (34)
16 2v71_A Nuclear distribution pr 66.9 45 0.0016 26.3 10.9 83 26-114 12-115 (189)
17 1gd2_E Transcription factor PA 59.2 36 0.0012 22.6 7.4 45 71-115 17-64 (70)
18 3oja_B Anopheles plasmodium-re 58.3 97 0.0033 27.2 11.5 37 77-113 520-556 (597)
19 2aze_A Transcription factor DP 56.4 64 0.0022 24.7 8.2 26 59-84 3-28 (155)
20 1hjb_A Ccaat/enhancer binding 52.4 55 0.0019 22.6 7.0 42 73-118 26-67 (87)
21 1j1d_C Troponin I, TNI; THIN f 52.0 71 0.0024 23.8 8.7 49 36-84 31-84 (133)
22 1go4_E MAD1 (mitotic arrest de 51.5 54 0.0019 23.3 6.6 15 32-46 13-27 (100)
23 3m9b_A Proteasome-associated A 49.5 28 0.00096 28.8 5.5 15 31-45 24-38 (251)
24 3nmd_A CGMP dependent protein 49.0 57 0.002 21.8 7.7 44 63-111 21-64 (72)
25 3na7_A HP0958; flagellar bioge 48.6 1E+02 0.0035 24.6 11.6 52 59-110 88-141 (256)
26 1m1j_C Fibrinogen gamma chain; 47.1 69 0.0024 28.1 8.0 46 2-54 26-71 (409)
27 1go4_E MAD1 (mitotic arrest de 46.2 44 0.0015 23.8 5.4 32 87-118 12-43 (100)
28 3s9g_A Protein hexim1; cyclin 44.2 84 0.0029 22.4 8.4 25 86-110 64-88 (104)
29 1gu4_A CAAT/enhancer binding p 44.1 71 0.0024 21.5 7.0 42 73-118 26-67 (78)
30 2jee_A YIIU; FTSZ, septum, coi 43.2 77 0.0026 21.7 6.4 34 79-112 12-45 (81)
31 1j1e_C Troponin I, TNI; THIN f 42.8 1.1E+02 0.0038 23.9 7.7 50 36-85 31-85 (180)
32 3gp4_A Transcriptional regulat 41.3 1E+02 0.0035 22.5 8.7 58 57-115 59-116 (142)
33 3anw_B GINS23, putative unchar 41.2 53 0.0018 25.5 5.6 49 33-82 82-132 (171)
34 1ytz_T Troponin T; muscle, THI 39.0 78 0.0027 22.6 5.9 31 54-84 38-68 (107)
35 1gk7_A Vimentin; intermediate 38.7 59 0.002 19.0 5.0 28 84-111 10-37 (39)
36 1uii_A Geminin; human, DNA rep 36.4 96 0.0033 21.3 5.7 29 82-110 48-76 (83)
37 2zxx_A Geminin; coiled-coil, c 36.4 61 0.0021 22.1 4.6 33 81-113 35-67 (79)
38 1am9_A Srebp-1A, protein (ster 36.3 68 0.0023 21.4 5.0 28 87-114 50-77 (82)
39 3q4f_C DNA repair protein XRCC 35.9 40 0.0014 26.6 4.1 24 86-109 160-183 (186)
40 3s4r_A Vimentin; alpha-helix, 34.8 1E+02 0.0035 21.2 5.8 35 62-96 10-46 (93)
41 2v71_A Nuclear distribution pr 34.2 1.7E+02 0.0058 23.0 12.6 35 80-114 123-157 (189)
42 1e52_A Excinuclease ABC subuni 34.1 35 0.0012 22.2 3.0 42 54-95 13-58 (63)
43 2w6b_A RHO guanine nucleotide 33.8 92 0.0031 19.8 5.4 32 85-116 8-39 (56)
44 2l5g_A GPS2 protein, G protein 33.2 53 0.0018 19.3 3.4 21 87-107 15-35 (38)
45 1j1d_B Troponin T, TNT; THIN f 33.2 74 0.0025 22.8 4.9 31 54-84 38-68 (106)
46 3w03_C DNA repair protein XRCC 31.3 97 0.0033 24.3 5.7 30 84-113 149-178 (184)
47 1t6f_A Geminin; coiled-coil, c 31.0 81 0.0028 18.3 4.5 26 82-107 9-34 (37)
48 3gpv_A Transcriptional regulat 30.8 1.6E+02 0.0053 21.5 7.8 56 57-113 73-128 (148)
49 3s4r_A Vimentin; alpha-helix, 29.6 1.4E+02 0.0047 20.5 9.3 33 82-114 51-83 (93)
50 3p57_A Myocyte-specific enhanc 29.2 14 0.00049 25.8 0.5 14 1-14 61-74 (90)
51 2aze_B Transcription factor E2 28.2 1.1E+02 0.0037 21.7 5.1 38 79-116 5-42 (106)
52 1ci6_A Transcription factor AT 28.1 1.2E+02 0.004 19.3 5.9 31 81-111 31-61 (63)
53 1wlq_A Geminin; coiled-coil; 2 28.0 1.3E+02 0.0044 20.7 5.2 30 82-111 40-69 (83)
54 3aei_A Prefoldin beta subunit 27.7 1.3E+02 0.0046 20.6 5.2 36 71-107 60-95 (99)
55 2oxj_A Hybrid alpha/beta pepti 27.4 92 0.0032 17.8 4.3 26 89-114 3-28 (34)
56 3thf_A Protein shroom; coiled- 27.0 1.4E+02 0.0049 23.5 6.0 37 74-114 10-46 (190)
57 3m48_A General control protein 26.9 93 0.0032 17.7 3.7 25 90-114 3-27 (33)
58 3o0z_A RHO-associated protein 26.1 2.3E+02 0.0077 21.9 9.8 36 81-116 98-133 (168)
59 1q08_A Zn(II)-responsive regul 26.1 1.5E+02 0.005 19.6 6.6 53 57-110 16-69 (99)
60 2oa5_A Hypothetical protein BQ 25.7 43 0.0015 24.3 2.5 24 89-112 10-33 (110)
61 1t2k_D Cyclic-AMP-dependent tr 25.5 1.3E+02 0.0043 18.8 5.5 28 83-110 32-59 (61)
62 2v66_B Nuclear distribution pr 25.0 1.9E+02 0.0066 20.7 9.9 28 88-115 36-63 (111)
63 1p9i_A Cortexillin I/GCN4 hybr 24.0 97 0.0033 16.9 3.2 18 96-113 8-25 (31)
64 1nkp_B MAX protein, MYC proto- 23.5 1.6E+02 0.0053 19.4 5.0 21 90-110 57-77 (83)
65 2wvr_A Geminin; DNA replicatio 22.7 1.7E+02 0.0058 23.4 5.7 47 66-113 102-148 (209)
66 1nlw_A MAD protein, MAX dimeri 22.6 1.8E+02 0.006 19.4 5.6 27 87-113 47-73 (80)
67 3qh9_A Liprin-beta-2; coiled-c 22.5 1.9E+02 0.0065 19.7 6.9 38 78-115 17-54 (81)
68 3azd_A Short alpha-tropomyosin 21.7 39 0.0013 19.6 1.3 26 87-112 4-29 (37)
69 1kd8_B GABH BLL, GCN4 acid bas 21.7 1.3E+02 0.0044 17.4 4.4 24 90-113 4-27 (36)
70 1ses_A Seryl-tRNA synthetase; 21.6 3.9E+02 0.013 23.0 11.5 77 34-114 5-91 (421)
71 2l5g_B Putative uncharacterize 21.0 86 0.0029 18.8 2.8 22 29-50 14-35 (42)
72 1m1j_B Fibrinogen beta chain; 20.9 4.4E+02 0.015 23.4 9.8 6 170-175 251-256 (464)
No 1
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=95.00 E-value=0.36 Score=33.57 Aligned_cols=47 Identities=17% Similarity=0.381 Sum_probs=39.3
Q ss_pred CCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030228 58 LSLRELQYLEQQIDTSLKRLRNRKNQLTHESISDLQKRERALQDQNNMLAKK 109 (181)
Q Consensus 58 Ls~kELq~LE~qLe~aL~~IRsrK~qlm~e~I~~LqkKe~~L~EeN~~L~~k 109 (181)
+|++=|.+||..++.|+..| .+|..+|++|+.|-..|..+|..++..
T Consensus 3 MS~ElleqLE~KIq~avdtI-----~lLqmEieELKekN~~L~~e~~e~~~~ 49 (81)
T 2jee_A 3 MSLEVFEKLEAKVQQAIDTI-----TLLQMEIEELKEKNNSLSQEVQNAQHQ 49 (81)
T ss_dssp CCHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 68888999999999999877 567778899998888888888876553
No 2
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=81.14 E-value=6 Score=25.76 Aligned_cols=39 Identities=23% Similarity=0.369 Sum_probs=31.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030228 73 SLKRLRNRKNQLTHESISDLQKRERALQDQNNMLAKKLKEKER 115 (181)
Q Consensus 73 aL~~IRsrK~qlm~e~I~~LqkKe~~L~EeN~~L~~kl~e~~~ 115 (181)
|-.+.|.||.+ .+.+|..+...|..+|..|..++.....
T Consensus 20 AArrsR~RK~~----~~~~Le~~v~~L~~eN~~L~~ev~~Lr~ 58 (63)
T 2dgc_A 20 AARRSRARKLQ----RMKQLEDKVEELLSKNYHLENEVARLKK 58 (63)
T ss_dssp HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677888864 5678999999999999999998876543
No 3
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=80.08 E-value=9.7 Score=24.64 Aligned_cols=41 Identities=17% Similarity=0.323 Sum_probs=31.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 030228 73 SLKRLRNRKNQLTHESISDLQKRERALQDQNNMLAKKLKEKERTL 117 (181)
Q Consensus 73 aL~~IRsrK~qlm~e~I~~LqkKe~~L~EeN~~L~~kl~e~~~~~ 117 (181)
|-.+-|.+|. +.+.+|..+...|..+|..|..+|.......
T Consensus 13 AA~R~R~KKk----~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~ 53 (63)
T 1ci6_A 13 AATRYRQKKR----AEQEALTGECKELEKKNEALKERADSLAKEI 53 (63)
T ss_dssp HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666665 4567889999999999999999998776544
No 4
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=78.77 E-value=11 Score=24.35 Aligned_cols=41 Identities=20% Similarity=0.323 Sum_probs=31.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 030228 73 SLKRLRNRKNQLTHESISDLQKRERALQDQNNMLAKKLKEKERTL 117 (181)
Q Consensus 73 aL~~IRsrK~qlm~e~I~~LqkKe~~L~EeN~~L~~kl~e~~~~~ 117 (181)
|-.+-|.||.+ .+.+|+.+...|..+|..|...|.......
T Consensus 13 AA~rcR~rKk~----~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~ 53 (63)
T 2wt7_A 13 AAAKCRNRRRE----LTDTLQAETDQLEDEKSALQTEIANLLKEK 53 (63)
T ss_dssp HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455778864 467899999999999999999997765443
No 5
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=78.46 E-value=5.2 Score=39.41 Aligned_cols=26 Identities=23% Similarity=0.376 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030228 90 SDLQKRERALQDQNNMLAKKLKEKER 115 (181)
Q Consensus 90 ~~LqkKe~~L~EeN~~L~~kl~e~~~ 115 (181)
++|+.|...|.++|..|+.++.+.+.
T Consensus 1019 ~~L~~kv~~L~~e~~~L~qq~~~l~~ 1044 (1080)
T 2dfs_A 1019 HETEQLVSELKEQNTLLKTEKEELNR 1044 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57778888899999999998887663
No 6
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=76.52 E-value=12 Score=23.80 Aligned_cols=41 Identities=17% Similarity=0.292 Sum_probs=32.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 030228 73 SLKRLRNRKNQLTHESISDLQKRERALQDQNNMLAKKLKEKERTL 117 (181)
Q Consensus 73 aL~~IRsrK~qlm~e~I~~LqkKe~~L~EeN~~L~~kl~e~~~~~ 117 (181)
|-.+-|.||.+ .+.+|+.+...|..+|..|..+|.......
T Consensus 12 AA~k~R~rKk~----~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~ 52 (61)
T 1t2k_D 12 AASRSRQKRKV----WVQSLEKKAEDLSSLNGQLQSEVTLLRNEV 52 (61)
T ss_dssp HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556777765 467899999999999999999998765544
No 7
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=75.81 E-value=4.4 Score=27.61 Aligned_cols=26 Identities=23% Similarity=0.500 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030228 83 QLTHESISDLQKRERALQDQNNMLAK 108 (181)
Q Consensus 83 qlm~e~I~~LqkKe~~L~EeN~~L~~ 108 (181)
+.+.++|.+|..|...|+.+|..|+.
T Consensus 18 evLKe~I~EL~e~~~qLE~EN~~Lk~ 43 (78)
T 1dip_A 18 EILKEQIRELVEKNSQLERENTLLKT 43 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666666653
No 8
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=75.47 E-value=9 Score=23.19 Aligned_cols=26 Identities=35% Similarity=0.471 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030228 85 THESISDLQKRERALQDQNNMLAKKL 110 (181)
Q Consensus 85 m~e~I~~LqkKe~~L~EeN~~L~~kl 110 (181)
|.....+|..|...|+.+|..|++.+
T Consensus 15 le~~naeLEervstLq~EN~mLRqvl 40 (42)
T 2oqq_A 15 LENKNSELEERLSTLQNENQMLRHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 44556777778888888888888766
No 9
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=75.29 E-value=14 Score=24.03 Aligned_cols=53 Identities=23% Similarity=0.312 Sum_probs=38.1
Q ss_pred CCCCHHHHHHHHHHHHHHhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030228 56 EPLSLRELQYLEQQIDTSLKRLR--NRKNQLTHESISDLQKRERALQDQNNMLAK 108 (181)
Q Consensus 56 ~~Ls~kELq~LE~qLe~aL~~IR--srK~qlm~e~I~~LqkKe~~L~EeN~~L~~ 108 (181)
++.++.|-..+-+-|-.|=.+|- -+=+.-|.+++.-+|+|...|+-+|..|+.
T Consensus 8 gpit~qeylevK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr~ 62 (63)
T 2w6a_A 8 GAVTLQEYLELKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLRQ 62 (63)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CcchHHHHHHHHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhcc
Confidence 45788888877777777666653 223445567888888898889988888763
No 10
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=75.11 E-value=23 Score=26.40 Aligned_cols=22 Identities=23% Similarity=0.226 Sum_probs=13.7
Q ss_pred hhhhhHHHHHHHHHHHHHHhhh
Q 030228 28 CWSLEYPNLKSRIEVLEKNIRN 49 (181)
Q Consensus 28 ~~~~E~~kLk~~ie~Lq~~~R~ 49 (181)
+...|+-+++.+++.|+.....
T Consensus 65 NiadEl~k~~~~~~~L~~~l~~ 86 (138)
T 3hnw_A 65 NIADDYFKAKKMADSLSLDIEN 86 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777777777666544433
No 11
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=74.86 E-value=13 Score=23.41 Aligned_cols=36 Identities=31% Similarity=0.495 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030228 75 KRLRNRKNQLTHESISDLQKRERALQDQNNMLAKKLKEKE 114 (181)
Q Consensus 75 ~~IRsrK~qlm~e~I~~LqkKe~~L~EeN~~L~~kl~e~~ 114 (181)
.+-|.||. ..+++|..+...|..+|..|..++....
T Consensus 14 ~rSR~RKk----~~~~~LE~~v~~L~~eN~~L~~~~~~L~ 49 (55)
T 1dh3_A 14 RESRRKKK----EYVKSLENRVAVLENQNKTLIEELKALK 49 (55)
T ss_dssp HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566676 4467889999999999999999987654
No 12
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=71.58 E-value=17 Score=23.21 Aligned_cols=41 Identities=24% Similarity=0.356 Sum_probs=32.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 030228 73 SLKRLRNRKNQLTHESISDLQKRERALQDQNNMLAKKLKEKERTL 117 (181)
Q Consensus 73 aL~~IRsrK~qlm~e~I~~LqkKe~~L~EeN~~L~~kl~e~~~~~ 117 (181)
|-.+-|.||.+ .+.+|..+...|..+|..|..+|.......
T Consensus 12 AA~k~R~rKk~----~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~ 52 (62)
T 1jnm_A 12 AASKSRKRKLE----RIARLEEKVKTLKAQNSELASTANMLREQV 52 (62)
T ss_dssp HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667777764 467899999999999999999997765443
No 13
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=70.56 E-value=31 Score=25.75 Aligned_cols=53 Identities=19% Similarity=0.198 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030228 63 LQYLEQQIDTSLKRLRNRKNQLTH--ESISDLQKRERALQDQNNMLAKKLKEKER 115 (181)
Q Consensus 63 Lq~LE~qLe~aL~~IRsrK~qlm~--e~I~~LqkKe~~L~EeN~~L~~kl~e~~~ 115 (181)
...|+.+++.--+.|=+=|.++.. ..++++.++...|.+++..|.+++...+.
T Consensus 77 ~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~ 131 (138)
T 3hnw_A 77 ADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLET 131 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555666553 34455666666666666666666665543
No 14
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=70.45 E-value=9.9 Score=23.97 Aligned_cols=29 Identities=21% Similarity=0.417 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030228 83 QLTHESISDLQKRERALQDQNNMLAKKLK 111 (181)
Q Consensus 83 qlm~e~I~~LqkKe~~L~EeN~~L~~kl~ 111 (181)
..|..++.+|+.|...|.+++..|+.++.
T Consensus 22 eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 22 ELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556778888888888888888887764
No 15
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=70.21 E-value=8 Score=22.44 Aligned_cols=26 Identities=31% Similarity=0.515 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030228 79 NRKNQLTHESISDLQKRERALQDQNN 104 (181)
Q Consensus 79 srK~qlm~e~I~~LqkKe~~L~EeN~ 104 (181)
.||++-....|++|+++-..|.++-.
T Consensus 6 RrKn~a~qqDIddlkrQN~~Le~Qir 31 (34)
T 1a93_B 6 RRKNDTHQQDIDDLKRQNALLEQQVR 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHhhHhhHHHHHHHHHHHHHHHH
Confidence 46777777888887777666665544
No 16
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=66.86 E-value=45 Score=26.31 Aligned_cols=83 Identities=20% Similarity=0.227 Sum_probs=42.8
Q ss_pred hhhhhhhHHHHHHHHHHHHHHhhhhcCCCCCCCCHHHHH-HHHHHHHHHhHHHHHHHHHH--HHH---------------
Q 030228 26 QGCWSLEYPNLKSRIEVLEKNIRNFMGGDLEPLSLRELQ-YLEQQIDTSLKRLRNRKNQL--THE--------------- 87 (181)
Q Consensus 26 ~~~~~~E~~kLk~~ie~Lq~~~R~l~GEdL~~Ls~kELq-~LE~qLe~aL~~IRsrK~ql--m~e--------------- 87 (181)
..+|...+..++.+++.++...--|.. +-+||. .||.+|+.+=+++|.-+.++ +..
T Consensus 12 ~~ywk~~~~~~~q~~~~le~El~EFqe------sSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e 85 (189)
T 2v71_A 12 TAYWKELSMKYKQSFQEARDELVEFQE------GSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQ 85 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457777666666666666655444432 112221 34444444444444322221 122
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030228 88 ---SISDLQKRERALQDQNNMLAKKLKEKE 114 (181)
Q Consensus 88 ---~I~~LqkKe~~L~EeN~~L~~kl~e~~ 114 (181)
.|+.|++....|.+.+..|.++|.+.+
T Consensus 86 ~~~~~~~Lq~el~~l~~~~~~l~~~ireLE 115 (189)
T 2v71_A 86 SYKQVSVLEDDLSQTRAIKEQLHKYVRELE 115 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 256666666667777777777776554
No 17
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=59.23 E-value=36 Score=22.57 Aligned_cols=45 Identities=18% Similarity=0.313 Sum_probs=28.6
Q ss_pred HHHhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030228 71 DTSLKRLRNRKNQLTH---ESISDLQKRERALQDQNNMLAKKLKEKER 115 (181)
Q Consensus 71 e~aL~~IRsrK~qlm~---e~I~~LqkKe~~L~EeN~~L~~kl~e~~~ 115 (181)
-.|=+..|.||.+-|. .++.+|......|..+|..|+..|.....
T Consensus 17 R~AQRafReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~ 64 (70)
T 1gd2_E 17 RAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEE 64 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466678888887553 34555555555566777777777765543
No 18
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=58.27 E-value=97 Score=27.24 Aligned_cols=37 Identities=27% Similarity=0.358 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030228 77 LRNRKNQLTHESISDLQKRERALQDQNNMLAKKLKEK 113 (181)
Q Consensus 77 IRsrK~qlm~e~I~~LqkKe~~L~EeN~~L~~kl~e~ 113 (181)
.+.++.+.+.+++++.+++-+.++++...+++++.+.
T Consensus 520 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~ 556 (597)
T 3oja_B 520 FKLRETQARRTEADAKQKETEDLEQENIALEKQLDNK 556 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhh
Confidence 3345555666666665555555666666666655543
No 19
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=56.37 E-value=64 Score=24.71 Aligned_cols=26 Identities=31% Similarity=0.446 Sum_probs=21.7
Q ss_pred CHHHHHHHHHHHHHHhHHHHHHHHHH
Q 030228 59 SLRELQYLEQQIDTSLKRLRNRKNQL 84 (181)
Q Consensus 59 s~kELq~LE~qLe~aL~~IRsrK~ql 84 (181)
|+.|.+.||..-..-..+|+.+|.+|
T Consensus 3 s~qe~~~Le~Ek~~~~~rI~~K~~~L 28 (155)
T 2aze_A 3 FAQECQNLEVERQRRLERIKQKQSQL 28 (155)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68899999999888889998777654
No 20
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=52.41 E-value=55 Score=22.59 Aligned_cols=42 Identities=21% Similarity=0.358 Sum_probs=30.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 030228 73 SLKRLRNRKNQLTHESISDLQKRERALQDQNNMLAKKLKEKERTLT 118 (181)
Q Consensus 73 aL~~IRsrK~qlm~e~I~~LqkKe~~L~EeN~~L~~kl~e~~~~~~ 118 (181)
|.++=|.++.+ ...+++.+...|..+|..|+.+|........
T Consensus 26 AarrSR~krk~----r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~ 67 (87)
T 1hjb_A 26 AVRKSRDKAKM----RNLETQHKVLELTAENERLQKKVEQLSRELS 67 (87)
T ss_dssp HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555554443 2356778888899999999999988766554
No 21
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=52.03 E-value=71 Score=23.79 Aligned_cols=49 Identities=18% Similarity=0.281 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHhhhhcC-----CCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHH
Q 030228 36 LKSRIEVLEKNIRNFMG-----GDLEPLSLRELQYLEQQIDTSLKRLRNRKNQL 84 (181)
Q Consensus 36 Lk~~ie~Lq~~~R~l~G-----EdL~~Ls~kELq~LE~qLe~aL~~IRsrK~ql 84 (181)
|+++.+.....-+.++. -++++||..+|+.+=+.|-.-+..+=+-|..+
T Consensus 31 l~kE~e~k~eeKkkiLaER~~pL~id~ls~~~L~e~~keLh~~I~~LEeEKYDl 84 (133)
T 1j1d_C 31 LEREAEERRGEKGRALSTRAQPLELAGLGFAELQDLARQLHARVDKVDEERYDI 84 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 44555555555555555 37888899999999888888887776666544
No 22
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=51.54 E-value=54 Score=23.30 Aligned_cols=15 Identities=33% Similarity=0.461 Sum_probs=6.7
Q ss_pred hHHHHHHHHHHHHHH
Q 030228 32 EYPNLKSRIEVLEKN 46 (181)
Q Consensus 32 E~~kLk~~ie~Lq~~ 46 (181)
+|.+|+.+|+.|++.
T Consensus 13 ~~~~lr~ei~~Le~E 27 (100)
T 1go4_E 13 EADTLRLKVEELEGE 27 (100)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444433
No 23
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=49.52 E-value=28 Score=28.77 Aligned_cols=15 Identities=27% Similarity=0.395 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHH
Q 030228 31 LEYPNLKSRIEVLEK 45 (181)
Q Consensus 31 ~E~~kLk~~ie~Lq~ 45 (181)
.++..|..++..|..
T Consensus 24 ~~~~~~~~e~~~l~~ 38 (251)
T 3m9b_A 24 AELEQLRREAAVLRE 38 (251)
T ss_dssp ---------------
T ss_pred HHHHHHHHHHHHHHH
Confidence 344445554444443
No 24
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=49.02 E-value=57 Score=21.85 Aligned_cols=44 Identities=23% Similarity=0.358 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030228 63 LQYLEQQIDTSLKRLRNRKNQLTHESISDLQKRERALQDQNNMLAKKLK 111 (181)
Q Consensus 63 Lq~LE~qLe~aL~~IRsrK~qlm~e~I~~LqkKe~~L~EeN~~L~~kl~ 111 (181)
+..|+..|......||.+.. .|.+|.+......++...|+.++.
T Consensus 21 i~eLq~~L~~K~eELr~kd~-----~I~eLEk~L~ekd~eI~~LqseLD 64 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDA-----LIDELELELDQKDELIQMLQNELD 64 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888888888888877654 356666666666666667776663
No 25
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=48.58 E-value=1e+02 Score=24.65 Aligned_cols=52 Identities=21% Similarity=0.261 Sum_probs=34.2
Q ss_pred CHHHHHHHHHHHHHHhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Q 030228 59 SLRELQYLEQQIDTSLKRLRNRKNQLT--HESISDLQKRERALQDQNNMLAKKL 110 (181)
Q Consensus 59 s~kELq~LE~qLe~aL~~IRsrK~qlm--~e~I~~LqkKe~~L~EeN~~L~~kl 110 (181)
+.+|+..|.+.++.+=++|...-.+++ ++.++.++.....+...-..+...+
T Consensus 88 ~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l 141 (256)
T 3na7_A 88 SERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLA 141 (256)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999988888776666544 5666665555444444444444333
No 26
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=47.10 E-value=69 Score=28.11 Aligned_cols=46 Identities=15% Similarity=0.122 Sum_probs=26.5
Q ss_pred hHHHHHHhhhhhhhhhhcccchhhhhhhhhhHHHHHHHHHHHHHHhhhhcCCC
Q 030228 2 ERILERYERNAYVEQQLVTNDAELQGCWSLEYPNLKSRIEVLEKNIRNFMGGD 54 (181)
Q Consensus 2 ~~iLERY~~~s~~~~~~~~~~~~~~~~~~~E~~kLk~~ie~Lq~~~R~l~GEd 54 (181)
+.+|-+|++-.... ...-+..-.+++.+...+..|-+.+.....++
T Consensus 26 ~d~L~k~e~~V~~~-------l~~LE~~l~elsn~ts~v~~Lvk~iq~~~~~~ 71 (409)
T 1m1j_C 26 ADFFNKYRLTTDGE-------LLEIEGLLQQATNSTGSIEYLIQHIKTIYPSE 71 (409)
T ss_dssp HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSS
T ss_pred HHHHHHHHhcchhH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 56788888744221 11122334567777777776666666665554
No 27
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=46.23 E-value=44 Score=23.80 Aligned_cols=32 Identities=19% Similarity=0.261 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 030228 87 ESISDLQKRERALQDQNNMLAKKLKEKERTLT 118 (181)
Q Consensus 87 e~I~~LqkKe~~L~EeN~~L~~kl~e~~~~~~ 118 (181)
+++..|+++...|.-+|..|++.+...+....
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le 43 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLEAQLE 43 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999999999999988776654
No 28
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=44.20 E-value=84 Score=22.39 Aligned_cols=25 Identities=16% Similarity=0.187 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 030228 86 HESISDLQKRERALQDQNNMLAKKL 110 (181)
Q Consensus 86 ~e~I~~LqkKe~~L~EeN~~L~~kl 110 (181)
-.+|.+|..+...|..+|..|...-
T Consensus 64 ~~~v~eLe~everL~~ENq~L~~e~ 88 (104)
T 3s9g_A 64 DARVRELELELDRLRAENLQLLTEN 88 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888888888888887543
No 29
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=44.09 E-value=71 Score=21.52 Aligned_cols=42 Identities=21% Similarity=0.358 Sum_probs=30.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 030228 73 SLKRLRNRKNQLTHESISDLQKRERALQDQNNMLAKKLKEKERTLT 118 (181)
Q Consensus 73 aL~~IRsrK~qlm~e~I~~LqkKe~~L~EeN~~L~~kl~e~~~~~~ 118 (181)
|.++=|.++.+ ...+++.+...|..+|..|+.+|........
T Consensus 26 AakrSR~krk~----r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~ 67 (78)
T 1gu4_A 26 AVRKSRDKAKM----RNLETQHKVLELTAENERLQKKVEQLSRELS 67 (78)
T ss_dssp HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555443 2356778888999999999999987766554
No 30
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=43.25 E-value=77 Score=21.67 Aligned_cols=34 Identities=26% Similarity=0.372 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030228 79 NRKNQLTHESISDLQKRERALQDQNNMLAKKLKE 112 (181)
Q Consensus 79 srK~qlm~e~I~~LqkKe~~L~EeN~~L~~kl~e 112 (181)
..|.+-+.+.|.-||-....|.++|..|..+..+
T Consensus 12 E~KIq~avdtI~lLqmEieELKekN~~L~~e~~e 45 (81)
T 2jee_A 12 EAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQN 45 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577888899999999999999999999999887
No 31
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=42.79 E-value=1.1e+02 Score=23.93 Aligned_cols=50 Identities=18% Similarity=0.296 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHhhhhcCC-----CCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 030228 36 LKSRIEVLEKNIRNFMGG-----DLEPLSLRELQYLEQQIDTSLKRLRNRKNQLT 85 (181)
Q Consensus 36 Lk~~ie~Lq~~~R~l~GE-----dL~~Ls~kELq~LE~qLe~aL~~IRsrK~qlm 85 (181)
|+.+-+.....-+.++.| +|++||..+|+.+=++|-.-+..+=+-|..+-
T Consensus 31 L~~E~e~k~eEKkkiLaER~kPLnid~Lse~~L~e~ckELh~~I~~LEeEKYDlE 85 (180)
T 1j1e_C 31 LEREAEERRGEKGRALSTRAQPLELAGLGFAELQDLARQLHARVDKVDEERYDIE 85 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 444445444444555543 78888999999999999888888777776553
No 32
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=41.34 E-value=1e+02 Score=22.51 Aligned_cols=58 Identities=17% Similarity=0.197 Sum_probs=38.8
Q ss_pred CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030228 57 PLSLRELQYLEQQIDTSLKRLRNRKNQLTHESISDLQKRERALQDQNNMLAKKLKEKER 115 (181)
Q Consensus 57 ~Ls~kELq~LE~qLe~aL~~IRsrK~qlm~e~I~~LqkKe~~L~EeN~~L~~kl~e~~~ 115 (181)
++|++|+..+=...+.+-..+. ...+++.+++..+..+...|+..-..|..++...+.
T Consensus 59 G~sL~eIk~~l~~~~~~~~~~~-~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~ 116 (142)
T 3gp4_A 59 GLSIEALIDYLALFREGEHTLE-ARAELLKKQRIELKNRIDVMQEALDRLDFKIDNYDT 116 (142)
T ss_dssp TCCHHHHHHHHHHHHHCGGGHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhccCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4899998877554443322222 224577788888888888888888888888765544
No 33
>3anw_B GINS23, putative uncharacterized protein; SLD5 superfamily, DNA replication, replication; 2.65A {Thermococcus kodakarensis}
Probab=41.17 E-value=53 Score=25.51 Aligned_cols=49 Identities=22% Similarity=0.271 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCCCCCC--HHHHHHHHHHHHHHhHHHHHHHH
Q 030228 33 YPNLKSRIEVLEKNIRNFMGGDLEPLS--LRELQYLEQQIDTSLKRLRNRKN 82 (181)
Q Consensus 33 ~~kLk~~ie~Lq~~~R~l~GEdL~~Ls--~kELq~LE~qLe~aL~~IRsrK~ 82 (181)
|.+.+.-+..|+...|.-.+.|++.+. +++|..+.+.++ .|..+|-+|-
T Consensus 82 Y~rvr~yI~~Le~ei~~~~~~d~~~~~~kl~elk~~~~~l~-~L~~~Ri~KI 132 (171)
T 3anw_B 82 YERAEFYAYYLENYVRLNPRESVDTINVKLTKLANLRKKLR-DLKLIRFNKI 132 (171)
T ss_dssp HHHHHHHHHHHHHHTTCCC-------CCHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 788888999999999999988877743 458877777665 4667777774
No 34
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=39.05 E-value=78 Score=22.64 Aligned_cols=31 Identities=16% Similarity=0.240 Sum_probs=23.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHhHHHHHHHHHH
Q 030228 54 DLEPLSLRELQYLEQQIDTSLKRLRNRKNQL 84 (181)
Q Consensus 54 dL~~Ls~kELq~LE~qLe~aL~~IRsrK~ql 84 (181)
++++||..+|+.+=++|-.-+..+=+-|..+
T Consensus 38 ~id~l~~~~L~e~~keLh~~I~~lEeEKYDl 68 (107)
T 1ytz_T 38 NIDHLNEDKLRDKAKELWDWLYQLQTEKYDF 68 (107)
T ss_dssp CCSSSCSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 8889999999988888877777666555543
No 35
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=38.66 E-value=59 Score=19.03 Aligned_cols=28 Identities=21% Similarity=0.369 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030228 84 LTHESISDLQKRERALQDQNNMLAKKLK 111 (181)
Q Consensus 84 lm~e~I~~LqkKe~~L~EeN~~L~~kl~ 111 (181)
-+.+.....-.|++.|..+|..|..+|.
T Consensus 10 ~LNdrlAsyidkVR~LE~~N~~Le~~i~ 37 (39)
T 1gk7_A 10 ELNDRFANYIDKVRFLEQQNKILLAELE 37 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566788899999999988873
No 36
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=36.44 E-value=96 Score=21.32 Aligned_cols=29 Identities=24% Similarity=0.297 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030228 82 NQLTHESISDLQKRERALQDQNNMLAKKL 110 (181)
Q Consensus 82 ~qlm~e~I~~LqkKe~~L~EeN~~L~~kl 110 (181)
|..|+++|+.|+.....|.++|..|+.-.
T Consensus 48 N~~Lh~~ie~l~eEi~~lk~en~eL~ela 76 (83)
T 1uii_A 48 NEKLHKEIEQKDNEIARLKKENKELAEVA 76 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666666666665444
No 37
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=36.36 E-value=61 Score=22.10 Aligned_cols=33 Identities=21% Similarity=0.255 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030228 81 KNQLTHESISDLQKRERALQDQNNMLAKKLKEK 113 (181)
Q Consensus 81 K~qlm~e~I~~LqkKe~~L~EeN~~L~~kl~e~ 113 (181)
-+..++.+|+.++.....|.++|..|..-..+.
T Consensus 35 EN~~Lh~~ie~~~eEi~~LkeEN~~L~el~~~~ 67 (79)
T 2zxx_A 35 ENEKLHKEIEQKDSEIARLRKENKDLAEVAEHV 67 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366677788888888888899998887655544
No 38
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=36.33 E-value=68 Score=21.41 Aligned_cols=28 Identities=21% Similarity=0.296 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030228 87 ESISDLQKRERALQDQNNMLAKKLKEKE 114 (181)
Q Consensus 87 e~I~~LqkKe~~L~EeN~~L~~kl~e~~ 114 (181)
+-|..|+.....|.+++..|+..+.+..
T Consensus 50 ~YI~~Lq~~~~~L~~e~~~L~~~~~~~~ 77 (82)
T 1am9_A 50 DYIRFLQHSNQKLKQENLSLRTAVHKSK 77 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4456777888888888988888886543
No 39
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=35.90 E-value=40 Score=26.59 Aligned_cols=24 Identities=25% Similarity=0.425 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 030228 86 HESISDLQKRERALQDQNNMLAKK 109 (181)
Q Consensus 86 ~e~I~~LqkKe~~L~EeN~~L~~k 109 (181)
.+.|.+|+.+...|+++|.+|...
T Consensus 160 L~~i~~L~a~N~hLqkENeRL~~e 183 (186)
T 3q4f_C 160 LDTIAENQAKNEHLQKENERLLRD 183 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467889999999999999999764
No 40
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=34.82 E-value=1e+02 Score=21.19 Aligned_cols=35 Identities=20% Similarity=0.387 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHhHHHHH--HHHHHHHHHHHHHHHHH
Q 030228 62 ELQYLEQQIDTSLKRLRN--RKNQLTHESISDLQKRE 96 (181)
Q Consensus 62 ELq~LE~qLe~aL~~IRs--rK~qlm~e~I~~LqkKe 96 (181)
+++.|-..|-.=+.+||. .-|..|..+|..++.+.
T Consensus 10 ~mq~LNdRlAsyIdKVR~LEqqN~~Le~~i~~l~~~~ 46 (93)
T 3s4r_A 10 ELQELNDRFANLIDKVRFLEQQNKILLAELEQLKGQG 46 (93)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 456666667677777773 44555556666655543
No 41
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=34.20 E-value=1.7e+02 Score=22.97 Aligned_cols=35 Identities=31% Similarity=0.451 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030228 80 RKNQLTHESISDLQKRERALQDQNNMLAKKLKEKE 114 (181)
Q Consensus 80 rK~qlm~e~I~~LqkKe~~L~EeN~~L~~kl~e~~ 114 (181)
|+......++.++..|-....|.|..|...+.+.+
T Consensus 123 r~~R~~~~SleD~e~kln~aiEr~alLE~El~EKe 157 (189)
T 2v71_A 123 RAKRATIMSLEDFEQRLNQAIERNAFLESELDEKE 157 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555667888888888888888888888888754
No 42
>1e52_A Excinuclease ABC subunit; DNA excision repair, UVRB, DNA repair, UVRC binding domain; NMR {Escherichia coli} SCOP: a.2.9.1 PDB: 1qoj_A
Probab=34.08 E-value=35 Score=22.15 Aligned_cols=42 Identities=12% Similarity=0.124 Sum_probs=29.6
Q ss_pred CCCCCCHHH----HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 030228 54 DLEPLSLRE----LQYLEQQIDTSLKRLRNRKNQLTHESISDLQKR 95 (181)
Q Consensus 54 dL~~Ls~kE----Lq~LE~qLe~aL~~IRsrK~qlm~e~I~~LqkK 95 (181)
+...++.++ +..|+.++..|.....--+...+.++|..|+++
T Consensus 13 ~~~~ls~~~~~~~i~~Le~~M~~AA~~leFE~AA~lRD~I~~L~~~ 58 (63)
T 1e52_A 13 VPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLREL 58 (63)
T ss_dssp SSCCSCCSHHHHHHHHHHHHHHHHHHTTCHHHHTTHHHHHHHHHHH
T ss_pred chhhcCHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 445555333 667788888888877777777778888777665
No 43
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=33.81 E-value=92 Score=19.79 Aligned_cols=32 Identities=22% Similarity=0.428 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030228 85 THESISDLQKRERALQDQNNMLAKKLKEKERT 116 (181)
Q Consensus 85 m~e~I~~LqkKe~~L~EeN~~L~~kl~e~~~~ 116 (181)
+.+-+..|+.....|+.+|+.|.+-+++..++
T Consensus 8 lVDtVYaLkDqV~eL~qe~k~m~k~lEeEqkA 39 (56)
T 2w6b_A 8 LVDTVYALKDEVQELRQDNKKMKKSLEEEQRA 39 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667778888888888888888888765443
No 44
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=33.24 E-value=53 Score=19.27 Aligned_cols=21 Identities=33% Similarity=0.430 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 030228 87 ESISDLQKRERALQDQNNMLA 107 (181)
Q Consensus 87 e~I~~LqkKe~~L~EeN~~L~ 107 (181)
++|..|+.|...|.++.-.|.
T Consensus 15 eQi~~l~~kl~~LkeEKHQLF 35 (38)
T 2l5g_A 15 EQILKLEEKLLALQEEKHQLF 35 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777777665553
No 45
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=33.16 E-value=74 Score=22.75 Aligned_cols=31 Identities=16% Similarity=0.229 Sum_probs=25.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHhHHHHHHHHHH
Q 030228 54 DLEPLSLRELQYLEQQIDTSLKRLRNRKNQL 84 (181)
Q Consensus 54 dL~~Ls~kELq~LE~qLe~aL~~IRsrK~ql 84 (181)
++++||.++|+.+=++|-.-+..+=+-|..+
T Consensus 38 ~id~l~~~~L~e~~keLh~~I~~LEeEKYDl 68 (106)
T 1j1d_B 38 AIDHLNEDQLREKAKELWQTIYNLEAEKFDL 68 (106)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 8999999999999888888877776666554
No 46
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=31.28 E-value=97 Score=24.29 Aligned_cols=30 Identities=20% Similarity=0.347 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030228 84 LTHESISDLQKRERALQDQNNMLAKKLKEK 113 (181)
Q Consensus 84 lm~e~I~~LqkKe~~L~EeN~~L~~kl~e~ 113 (181)
.+++.+.+|+.+...|+++|..|+..-...
T Consensus 149 ~~ld~~~~L~~~n~~LqkeNeRL~~E~n~~ 178 (184)
T 3w03_C 149 YCLDTIAENQAKNEHLQKENERLLRDWNDV 178 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456888999999999999999998876543
No 47
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=30.98 E-value=81 Score=18.33 Aligned_cols=26 Identities=27% Similarity=0.353 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030228 82 NQLTHESISDLQKRERALQDQNNMLA 107 (181)
Q Consensus 82 ~qlm~e~I~~LqkKe~~L~EeN~~L~ 107 (181)
+..++..|+.-+.....|.++|..|.
T Consensus 9 NekLhk~ie~KdeeIa~Lk~eN~eL~ 34 (37)
T 1t6f_A 9 NEKLHKEIEQKDNEIARLKKENKELA 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 44555566555555666666666654
No 48
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=30.79 E-value=1.6e+02 Score=21.54 Aligned_cols=56 Identities=4% Similarity=0.075 Sum_probs=35.7
Q ss_pred CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030228 57 PLSLRELQYLEQQIDTSLKRLRNRKNQLTHESISDLQKRERALQDQNNMLAKKLKEK 113 (181)
Q Consensus 57 ~Ls~kELq~LE~qLe~aL~~IRsrK~qlm~e~I~~LqkKe~~L~EeN~~L~~kl~e~ 113 (181)
++|++|+..+=...+.+-..+. ...+++.+++..+.++...|+..-..|..++...
T Consensus 73 G~sL~eIk~~l~~~~~~~~~~~-~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~i~~~ 128 (148)
T 3gpv_A 73 GMPIQKIKQFIDWSMEGDSTIL-HRLKLMKQQEANVLQLIQDTEKNLKKIQQKIAKY 128 (148)
T ss_dssp TCCHHHHHHHHHHHHHCGGGHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHhhhcCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4899988877553332222222 2235677788888888887877777777777543
No 49
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=29.61 E-value=1.4e+02 Score=20.53 Aligned_cols=33 Identities=12% Similarity=0.246 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030228 82 NQLTHESISDLQKRERALQDQNNMLAKKLKEKE 114 (181)
Q Consensus 82 ~qlm~e~I~~LqkKe~~L~EeN~~L~~kl~e~~ 114 (181)
..+....|.+|+++...+.-+|..|..++....
T Consensus 51 ~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~ 83 (93)
T 3s4r_A 51 GDLYEEEMRELRRQVDQLTNDKARVEVERDNLA 83 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345778899999999999999999888876543
No 50
>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A
Probab=29.24 E-value=14 Score=25.80 Aligned_cols=14 Identities=21% Similarity=0.444 Sum_probs=11.3
Q ss_pred ChHHHHHHhhhhhh
Q 030228 1 MERILERYERNAYV 14 (181)
Q Consensus 1 M~~iLERY~~~s~~ 14 (181)
|.+||+||++++..
T Consensus 61 ~~~il~rY~~~~~~ 74 (90)
T 3p57_A 61 MDKVLLKYTEYNEP 74 (90)
T ss_dssp HHHHHHHHHHCCSC
T ss_pred HHHHHHHHHhcCcc
Confidence 57899999998643
No 51
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=28.24 E-value=1.1e+02 Score=21.68 Aligned_cols=38 Identities=16% Similarity=0.212 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030228 79 NRKNQLTHESISDLQKRERALQDQNNMLAKKLKEKERT 116 (181)
Q Consensus 79 srK~qlm~e~I~~LqkKe~~L~EeN~~L~~kl~e~~~~ 116 (181)
..|.+.+..+|+.|..+|+.|-+.-..+...+......
T Consensus 5 ~~~~~~Lk~El~~L~~~E~~LD~~i~~~~~~l~~lted 42 (106)
T 2aze_B 5 GGRLEGLTQDLRQLQESEQQLDHLMNICTTQLRLLSED 42 (106)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34566778899999999999999998888888776543
No 52
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=28.08 E-value=1.2e+02 Score=19.28 Aligned_cols=31 Identities=13% Similarity=0.190 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030228 81 KNQLTHESISDLQKRERALQDQNNMLAKKLK 111 (181)
Q Consensus 81 K~qlm~e~I~~LqkKe~~L~EeN~~L~~kl~ 111 (181)
+.+-|.....+|+.+...|..++..|+.-|.
T Consensus 31 ~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 31 ECKELEKKNEALKERADSLAKEIQYLKDLIE 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344555556666666667777777765553
No 53
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=28.02 E-value=1.3e+02 Score=20.69 Aligned_cols=30 Identities=23% Similarity=0.282 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030228 82 NQLTHESISDLQKRERALQDQNNMLAKKLK 111 (181)
Q Consensus 82 ~qlm~e~I~~LqkKe~~L~EeN~~L~~kl~ 111 (181)
|..|++.|+.++.....|.++|..|+.-..
T Consensus 40 N~~Lh~~ie~~~eEi~~Lk~en~~L~elA~ 69 (83)
T 1wlq_A 40 NEKLHKEIEQKDSEIARLRKENKDLAEVAE 69 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555677788877777888888888775543
No 54
>3aei_A Prefoldin beta subunit 2; double helix, coiled coil, chaperone; 1.70A {Thermococcus SP}
Probab=27.67 E-value=1.3e+02 Score=20.57 Aligned_cols=36 Identities=22% Similarity=0.451 Sum_probs=23.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030228 71 DTSLKRLRNRKNQLTHESISDLQKRERALQDQNNMLA 107 (181)
Q Consensus 71 e~aL~~IRsrK~qlm~e~I~~LqkKe~~L~EeN~~L~ 107 (181)
+.|+.+|- |-.=....+|+.|++|++...|+-..|+
T Consensus 60 deaiehie-r~rl~ykreie~l~~~ekeime~ls~l~ 95 (99)
T 3aei_A 60 DEAIEHIE-RSRLVYKREIEKLKKREKEIMEELSKLR 95 (99)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34555552 2222445789999999998888776665
No 55
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=27.39 E-value=92 Score=17.82 Aligned_cols=26 Identities=15% Similarity=0.273 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030228 89 ISDLQKRERALQDQNNMLAKKLKEKE 114 (181)
Q Consensus 89 I~~LqkKe~~L~EeN~~L~~kl~e~~ 114 (181)
++.|..|...|..+|..|...+....
T Consensus 3 MnQLE~kVEeLl~~n~~Le~eV~rLk 28 (34)
T 2oxj_A 3 MXQLEXKVXELLXKNXHLEXEVXRLK 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 45666777777788888877765443
No 56
>3thf_A Protein shroom; coiled-coil, anti-parallel, helical, RHO-kinase, actin-bindi protein binding, cytoskeleton regulator; 2.70A {Drosophila melanogaster}
Probab=27.02 E-value=1.4e+02 Score=23.50 Aligned_cols=37 Identities=8% Similarity=0.308 Sum_probs=29.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030228 74 LKRLRNRKNQLTHESISDLQKRERALQDQNNMLAKKLKEKE 114 (181)
Q Consensus 74 L~~IRsrK~qlm~e~I~~LqkKe~~L~EeN~~L~~kl~e~~ 114 (181)
-..|..+|.+|+ +.|++|...|.++-..|...+..+.
T Consensus 10 ~~~i~~Kk~ELi----~~L~~kL~~L~~eqe~l~ee~~~N~ 46 (190)
T 3thf_A 10 TNLIKQKMDELI----KHLNQKIVSLKREQQTISEECSAND 46 (190)
T ss_dssp CCHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346888888875 6889999999999998888887654
No 57
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=26.92 E-value=93 Score=17.71 Aligned_cols=25 Identities=16% Similarity=0.239 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 030228 90 SDLQKRERALQDQNNMLAKKLKEKE 114 (181)
Q Consensus 90 ~~LqkKe~~L~EeN~~L~~kl~e~~ 114 (181)
+.|..|...|..+|..|...+....
T Consensus 3 ~QLE~kVEeLl~~n~~Le~EV~RLk 27 (33)
T 3m48_A 3 AQLEAKVEELLSKNWNLENEVARLK 27 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4566777778888888887776544
No 58
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=26.09 E-value=2.3e+02 Score=21.88 Aligned_cols=36 Identities=11% Similarity=0.208 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030228 81 KNQLTHESISDLQKRERALQDQNNMLAKKLKEKERT 116 (181)
Q Consensus 81 K~qlm~e~I~~LqkKe~~L~EeN~~L~~kl~e~~~~ 116 (181)
|.+-+..+++.++.++..+..+|+.|..+|...++.
T Consensus 98 ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe 133 (168)
T 3o0z_A 98 RITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKE 133 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666777888888888888888899998888876653
No 59
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=26.05 E-value=1.5e+02 Score=19.64 Aligned_cols=53 Identities=15% Similarity=0.155 Sum_probs=28.0
Q ss_pred CCCHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030228 57 PLSLRELQYLEQQIDTSLK-RLRNRKNQLTHESISDLQKRERALQDQNNMLAKKL 110 (181)
Q Consensus 57 ~Ls~kELq~LE~qLe~aL~-~IRsrK~qlm~e~I~~LqkKe~~L~EeN~~L~~kl 110 (181)
+||++|+..+=.-.+.+-. .+ ..-..++.+++..+.++...|...-..|..++
T Consensus 16 GfsL~eIk~~l~~~~~~~~~~~-~~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~~ 69 (99)
T 1q08_A 16 GFSLESIRELLSIRIDPEHHTC-QESKGIVQERLQEVEARIAELQSMQRSLQRLN 69 (99)
T ss_dssp TCCHHHHHHHHHHHHCGGGCBH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCCcccH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3888888876432221100 01 12234566666666666666665555555554
No 60
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=25.69 E-value=43 Score=24.29 Aligned_cols=24 Identities=25% Similarity=0.358 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 030228 89 ISDLQKRERALQDQNNMLAKKLKE 112 (181)
Q Consensus 89 I~~LqkKe~~L~EeN~~L~~kl~e 112 (181)
+++|..+...|+=||+.|+++|..
T Consensus 10 ~EeLaaeL~kLqmENK~LKkkl~~ 33 (110)
T 2oa5_A 10 YEEMVKEVERLKLENKTLKQKVKS 33 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 577888888899999999999964
No 61
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=25.50 E-value=1.3e+02 Score=18.78 Aligned_cols=28 Identities=18% Similarity=0.116 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030228 83 QLTHESISDLQKRERALQDQNNMLAKKL 110 (181)
Q Consensus 83 qlm~e~I~~LqkKe~~L~EeN~~L~~kl 110 (181)
..+..+...|+.+...|.+++..|+..|
T Consensus 32 ~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 32 EDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455566666666666666666544
No 62
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=25.00 E-value=1.9e+02 Score=20.72 Aligned_cols=28 Identities=21% Similarity=0.233 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030228 88 SISDLQKRERALQDQNNMLAKKLKEKER 115 (181)
Q Consensus 88 ~I~~LqkKe~~L~EeN~~L~~kl~e~~~ 115 (181)
.|+.||+....|...|..|..+|.+.+.
T Consensus 36 ~~~~Lq~El~~lr~~~~~l~~~iReLEq 63 (111)
T 2v66_B 36 QVSVLEDDLSQTRAIKEQLHKYVRELEQ 63 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666666666677777777666665543
No 63
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=24.01 E-value=97 Score=16.93 Aligned_cols=18 Identities=28% Similarity=0.359 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 030228 96 ERALQDQNNMLAKKLKEK 113 (181)
Q Consensus 96 e~~L~EeN~~L~~kl~e~ 113 (181)
...|.-+|+.|+.|+++.
T Consensus 8 lasleaenkqlkakveel 25 (31)
T 1p9i_A 8 LASLEAENKQLKAKVEEL 25 (31)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456788899999888764
No 64
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=23.50 E-value=1.6e+02 Score=19.38 Aligned_cols=21 Identities=24% Similarity=0.343 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 030228 90 SDLQKRERALQDQNNMLAKKL 110 (181)
Q Consensus 90 ~~LqkKe~~L~EeN~~L~~kl 110 (181)
..|+.....|..+|..|..++
T Consensus 57 ~~l~~e~~~L~~~~~~L~~~l 77 (83)
T 1nkp_B 57 HTHQQDIDDLKRQNALLEQQV 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555555544
No 65
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=22.70 E-value=1.7e+02 Score=23.40 Aligned_cols=47 Identities=17% Similarity=0.222 Sum_probs=30.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030228 66 LEQQIDTSLKRLRNRKNQLTHESISDLQKRERALQDQNNMLAKKLKEK 113 (181)
Q Consensus 66 LE~qLe~aL~~IRsrK~qlm~e~I~~LqkKe~~L~EeN~~L~~kl~e~ 113 (181)
|=.+=..||.-+ -.-|+.|++.|+.++.....|.++|..|+.-+...
T Consensus 102 lAE~RR~AL~ea-LeEN~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~~ 148 (209)
T 2wvr_A 102 VAEKRRKALYEA-LKENEKLHKEIEQKDNEIARLKKENKELAEVAEHV 148 (209)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333434444444 23466778888888888888888888887665443
No 66
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=22.55 E-value=1.8e+02 Score=19.35 Aligned_cols=27 Identities=19% Similarity=0.255 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030228 87 ESISDLQKRERALQDQNNMLAKKLKEK 113 (181)
Q Consensus 87 e~I~~LqkKe~~L~EeN~~L~~kl~e~ 113 (181)
+-|..|+.++..+..++..|+.+..+.
T Consensus 47 ~yI~~L~~~~~~l~~e~~~L~~e~~~L 73 (80)
T 1nlw_A 47 LHIKKLEDSDRKAVHQIDQLQREQRHL 73 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555555554443
No 67
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=22.48 E-value=1.9e+02 Score=19.71 Aligned_cols=38 Identities=21% Similarity=0.322 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030228 78 RNRKNQLTHESISDLQKRERALQDQNNMLAKKLKEKER 115 (181)
Q Consensus 78 RsrK~qlm~e~I~~LqkKe~~L~EeN~~L~~kl~e~~~ 115 (181)
|-+|++=+..+|.+|+-|+..+..+-..-.+|+.....
T Consensus 17 ~~~~~E~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~ 54 (81)
T 3qh9_A 17 KQRKAEELLQELRHLKIKVEELENERNQYEWKLKATKA 54 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 44778888889999999988888888777777766543
No 68
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=21.74 E-value=39 Score=19.58 Aligned_cols=26 Identities=27% Similarity=0.487 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030228 87 ESISDLQKRERALQDQNNMLAKKLKE 112 (181)
Q Consensus 87 e~I~~LqkKe~~L~EeN~~L~~kl~e 112 (181)
..|+.+++|.+.|+.++..+...+..
T Consensus 4 ~~i~avKkKiq~lq~q~d~aee~~~~ 29 (37)
T 3azd_A 4 SSLEAVRRKIRSLQEQNYHLENEVAR 29 (37)
T ss_dssp --CHHHHHHHHHHHHHTTTTHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777777766666555543
No 69
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=21.66 E-value=1.3e+02 Score=17.44 Aligned_cols=24 Identities=17% Similarity=0.199 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 030228 90 SDLQKRERALQDQNNMLAKKLKEK 113 (181)
Q Consensus 90 ~~LqkKe~~L~EeN~~L~~kl~e~ 113 (181)
..|..|...|...|..|..++...
T Consensus 4 nQLE~KVEeLl~~~~~Le~eV~RL 27 (36)
T 1kd8_B 4 KQLKAKVEELKSKLWHLKNKVARL 27 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHH
Confidence 344455555555555555555443
No 70
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=21.58 E-value=3.9e+02 Score=23.01 Aligned_cols=77 Identities=30% Similarity=0.482 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCCCCCHHHHHHHHHHHH---HHhHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Q 030228 34 PNLKSRIEVLEKNIRNFMGGDLEPLSLRELQYLEQQID---TSLKRLRNRKNQLTH-------ESISDLQKRERALQDQN 103 (181)
Q Consensus 34 ~kLk~~ie~Lq~~~R~l~GEdL~~Ls~kELq~LE~qLe---~aL~~IRsrK~qlm~-------e~I~~LqkKe~~L~EeN 103 (181)
..++...+.+...++.. |.++ +++++..|..+.. ..+..+|++++.+=. +..+.|..+.+.+.++-
T Consensus 5 ~~~r~~~~~~~~~~~~r-~~~~---~~~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~l~~~~~~~~~~~ 80 (421)
T 1ses_A 5 KRLRQEPEVFHRAIREK-GVAL---DLEALLALDREVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEA 80 (421)
T ss_dssp HHHHHCHHHHHHHHHHH-TCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHh-CCCc---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHH
Confidence 34455566666666654 4454 3888888875544 445555666654421 22333444444444444
Q ss_pred HHHHHHHHHHH
Q 030228 104 NMLAKKLKEKE 114 (181)
Q Consensus 104 ~~L~~kl~e~~ 114 (181)
+.|..++.+.+
T Consensus 81 ~~~~~~~~~~~ 91 (421)
T 1ses_A 81 KRLEEALREKE 91 (421)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444444433
No 71
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=21.00 E-value=86 Score=18.84 Aligned_cols=22 Identities=18% Similarity=0.232 Sum_probs=17.6
Q ss_pred hhhhHHHHHHHHHHHHHHhhhh
Q 030228 29 WSLEYPNLKSRIEVLEKNIRNF 50 (181)
Q Consensus 29 ~~~E~~kLk~~ie~Lq~~~R~l 50 (181)
-..|+++-+.+|..||..++.|
T Consensus 14 VdrEI~Kte~kI~~lqkKlkeL 35 (42)
T 2l5g_B 14 VDREITMVEQQISKLKKKQQQL 35 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3578888899999998888765
No 72
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=20.95 E-value=4.4e+02 Score=23.39 Aligned_cols=6 Identities=17% Similarity=0.218 Sum_probs=3.5
Q ss_pred CCCccc
Q 030228 170 VPWWMH 175 (181)
Q Consensus 170 ~p~wm~ 175 (181)
-.+|++
T Consensus 251 ggGWtV 256 (464)
T 1m1j_B 251 NGGWTL 256 (464)
T ss_dssp GSCEEE
T ss_pred CCCeEE
Confidence 357764
Done!