Query 030228
Match_columns 181
No_of_seqs 224 out of 1249
Neff 6.2
Searched_HMMs 13730
Date Mon Mar 25 16:58:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030228.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/030228hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1r8ea1 a.6.1.3 (A:3-120) Tran 38.4 46 0.0033 21.5 6.6 10 57-66 61-70 (118)
2 d2azea1 e.63.1.1 (A:199-346) T 32.1 78 0.0057 22.2 7.9 24 61-84 2-25 (148)
3 d1e52a_ a.2.9.1 (A:) C-termina 30.3 22 0.0016 21.0 3.1 35 62-96 18-52 (56)
4 d1uklc_ a.38.1.1 (C:) SREBP-2 29.9 42 0.0031 19.6 4.5 24 87-110 33-56 (61)
5 d1am9a_ a.38.1.1 (A:) SREBP-1a 28.5 56 0.0041 19.9 5.1 33 81-113 41-76 (80)
6 d1nkpb_ a.38.1.1 (B:) Max prot 27.4 63 0.0046 19.7 6.3 20 91-110 58-77 (83)
7 d2azeb1 e.63.1.2 (B:201-301) T 26.8 73 0.0053 20.7 5.7 35 82-116 3-37 (101)
8 d2oa5a1 d.362.1.1 (A:7-102) Un 25.3 21 0.0015 23.6 2.5 24 89-112 4-27 (96)
9 d2clyc1 f.45.1.1 (C:5-70) ATPa 20.1 59 0.0043 19.8 3.7 16 43-58 40-55 (66)
10 d1nlwa_ a.38.1.1 (A:) Mad prot 19.0 81 0.0059 18.9 4.4 18 93-110 60-77 (79)
No 1
>d1r8ea1 a.6.1.3 (A:3-120) Transcription activator BmrR {Bacillus subtilis [TaxId: 1423]}
Probab=38.43 E-value=46 Score=21.47 Aligned_cols=10 Identities=20% Similarity=0.218 Sum_probs=6.5
Q ss_pred CCCHHHHHHH
Q 030228 57 PLSLRELQYL 66 (181)
Q Consensus 57 ~Ls~kELq~L 66 (181)
++|++|+..+
T Consensus 61 g~sl~eIk~~ 70 (118)
T d1r8ea1 61 GTPLEEMKKA 70 (118)
T ss_dssp TCCHHHHHHH
T ss_pred CCCHHHHHHH
Confidence 3777776654
No 2
>d2azea1 e.63.1.1 (A:199-346) Transcription factor DP-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=32.08 E-value=78 Score=22.23 Aligned_cols=24 Identities=33% Similarity=0.538 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHH
Q 030228 61 RELQYLEQQIDTSLKRLRNRKNQL 84 (181)
Q Consensus 61 kELq~LE~qLe~aL~~IRsrK~ql 84 (181)
.|.+.||........+|+.++.+|
T Consensus 2 Qe~~~Le~E~~~~~erI~~K~~~L 25 (148)
T d2azea1 2 QECQNLEVERQRRLERIKQKQSQL 25 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 577889999899899998777654
No 3
>d1e52a_ a.2.9.1 (A:) C-terminal UvrC-binding domain of UvrB {Escherichia coli [TaxId: 562]}
Probab=30.29 E-value=22 Score=21.04 Aligned_cols=35 Identities=11% Similarity=0.147 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 030228 62 ELQYLEQQIDTSLKRLRNRKNQLTHESISDLQKRE 96 (181)
Q Consensus 62 ELq~LE~qLe~aL~~IRsrK~qlm~e~I~~LqkKe 96 (181)
.+..||+++..|.+...--|.-.+.++|..|++..
T Consensus 18 ~i~~Le~~M~~aa~~l~FE~AA~~RD~I~~l~~~l 52 (56)
T d1e52a_ 18 KIHELEGLMMQHAQNLEFEEAAQIRDQLHQLRELF 52 (56)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Confidence 37788888888888888888888888888877653
No 4
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=29.91 E-value=42 Score=19.56 Aligned_cols=24 Identities=25% Similarity=0.263 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 030228 87 ESISDLQKRERALQDQNNMLAKKL 110 (181)
Q Consensus 87 e~I~~LqkKe~~L~EeN~~L~~kl 110 (181)
+-|..|+++...|.+++..|+...
T Consensus 33 ~YI~~Lq~~~~~L~~e~~~L~~~~ 56 (61)
T d1uklc_ 33 DYIKYLQQVNHKLRQENMVLKLAN 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567777778888887776654
No 5
>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.49 E-value=56 Score=19.90 Aligned_cols=33 Identities=21% Similarity=0.289 Sum_probs=20.9
Q ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030228 81 KNQLTH---ESISDLQKRERALQDQNNMLAKKLKEK 113 (181)
Q Consensus 81 K~qlm~---e~I~~LqkKe~~L~EeN~~L~~kl~e~ 113 (181)
|..+|. +-|..|+++...|.+++..|+..+...
T Consensus 41 K~~iL~~a~~yI~~L~~~~~~L~~e~~~lk~~~~~~ 76 (80)
T d1am9a_ 41 KSAVLRKAIDYIRFLQHSNQKLKQENLSLRTAVHKS 76 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555554 345566666777777887777766543
No 6
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.36 E-value=63 Score=19.68 Aligned_cols=20 Identities=25% Similarity=0.363 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 030228 91 DLQKRERALQDQNNMLAKKL 110 (181)
Q Consensus 91 ~LqkKe~~L~EeN~~L~~kl 110 (181)
.|......|..+|..|..+|
T Consensus 58 ~l~~~~~~l~~~~~~L~~~l 77 (83)
T d1nkpb_ 58 THQQDIDDLKRQNALLEQQV 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333334444455554444
No 7
>d2azeb1 e.63.1.2 (B:201-301) Transcription factor E2F1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.78 E-value=73 Score=20.70 Aligned_cols=35 Identities=17% Similarity=0.210 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030228 82 NQLTHESISDLQKRERALQDQNNMLAKKLKEKERT 116 (181)
Q Consensus 82 ~qlm~e~I~~LqkKe~~L~EeN~~L~~kl~e~~~~ 116 (181)
.+-+..+|+.|..+|+.|-+.-..+..++......
T Consensus 3 ~~~L~~El~~L~~~E~~LD~li~~~~~~L~~lted 37 (101)
T d2azeb1 3 LEGLTQDLRQLQESEQQLDHLMNICTTQLRLLSED 37 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 45577899999999999999988888888775543
No 8
>d2oa5a1 d.362.1.1 (A:7-102) Uncharacterized protein BQLF2 {Murid herpesvirus 4 [TaxId: 33708]}
Probab=25.27 E-value=21 Score=23.61 Aligned_cols=24 Identities=25% Similarity=0.358 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 030228 89 ISDLQKRERALQDQNNMLAKKLKE 112 (181)
Q Consensus 89 I~~LqkKe~~L~EeN~~L~~kl~e 112 (181)
+++|..+...|+=||+.|++++..
T Consensus 4 ~EeLaaeL~rL~~ENk~LKkkl~~ 27 (96)
T d2oa5a1 4 YEEMVKEVERLKLENKTLKQKVKS 27 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 578888999999999999999964
No 9
>d2clyc1 f.45.1.1 (C:5-70) ATPase subunit F6 {Cow (Bos taurus) [TaxId: 9913]}
Probab=20.13 E-value=59 Score=19.83 Aligned_cols=16 Identities=19% Similarity=0.189 Sum_probs=9.8
Q ss_pred HHHHhhhhcCCCCCCC
Q 030228 43 LEKNIRNFMGGDLEPL 58 (181)
Q Consensus 43 Lq~~~R~l~GEdL~~L 58 (181)
|.+-.|++-|.|+..+
T Consensus 40 l~kl~~~YG~gdm~~F 55 (66)
T d2clyc1 40 LFKLKQMYGKADMNTF 55 (66)
T ss_dssp HHHHHHHHCSSCTTSC
T ss_pred HHHHHHHHCCCchhhC
Confidence 3444477778877654
No 10
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.97 E-value=81 Score=18.92 Aligned_cols=18 Identities=22% Similarity=0.316 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 030228 93 QKRERALQDQNNMLAKKL 110 (181)
Q Consensus 93 qkKe~~L~EeN~~L~~kl 110 (181)
......|..++..|+.++
T Consensus 60 ~~~~~~L~~~~~~L~~~l 77 (79)
T d1nlwa_ 60 VHQIDQLQREQRHLKRQL 77 (79)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 333334444555555544
Done!