Query 030229
Match_columns 181
No_of_seqs 14 out of 16
Neff 1.7
Searched_HMMs 29240
Date Mon Mar 25 16:59:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030229.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030229hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dgw_A PRE-mRNA-splicing facto 88.2 1.1 3.7E-05 39.5 6.7 63 108-175 310-373 (402)
2 3tbg_A Cytochrome P450 2D6; mo 30.0 17 0.00057 28.2 1.0 7 85-91 12-18 (479)
3 1f5n_A Interferon-induced guan 28.9 2.2E+02 0.0075 25.7 8.2 20 158-177 520-540 (592)
4 2zjr_Z 50S ribosomal protein L 28.3 48 0.0016 22.1 3.0 47 67-113 6-55 (60)
5 2e1m_A L-glutamate oxidase; L- 27.5 13 0.00044 31.2 -0.0 19 81-99 356-375 (376)
6 4efa_E V-type proton ATPase su 23.3 2.5E+02 0.0086 21.4 9.3 22 116-137 14-35 (233)
7 3p7i_A PHND, subunit of alkylp 22.9 2.2E+02 0.0076 22.4 6.4 32 138-175 285-316 (321)
8 1y71_A Kinase-associated prote 22.5 43 0.0015 26.2 2.1 27 150-176 100-128 (130)
9 2kgm_A Protein STE5; MAPKKK, S 21.6 45 0.0015 19.7 1.6 20 158-177 4-23 (24)
10 3v2d_5 50S ribosomal protein L 20.0 56 0.0019 21.8 2.0 48 67-114 6-56 (60)
No 1
>4dgw_A PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A {Saccharomyces cerevisiae}
Probab=88.16 E-value=1.1 Score=39.55 Aligned_cols=63 Identities=29% Similarity=0.345 Sum_probs=48.2
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030229 108 GSVKRRNEKKRMRQRRAFILSEAKKRK-AQLQEANRKKRAQRVERKMAAVARERAWAERLAELQRLEEE 175 (181)
Q Consensus 108 GSVk~RnekKRm~qr~aFi~aE~kKRk-aQ~~~A~rrK~~~rvErKMAAVAReRaWaeRL~eLqqlEee 175 (181)
|...|++++|...++++....|.+=.+ ..+-.-.+..-+.-||||+|-.++||.+ |+..+++|
T Consensus 310 ~hL~GKkh~K~~~~~k~iA~~E~~I~~l~~~L~~~~~~Tk~nVERKqa~T~~Ere~-----E~e~l~~e 373 (402)
T 4dgw_A 310 SHLVGKIHKKNESKRRNFVYSEYKLHRYLKYLNDEFSRTRSFVERKLAFTANERMA-----EMDILTQK 373 (402)
T ss_dssp TTSSSHHHHHHHHHSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCHHHHHH-----HHHHHHHH
T ss_pred HHhcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH-----HHHHHHHH
Confidence 567889999999999999999988666 3444455666778899999999998876 44444444
No 2
>3tbg_A Cytochrome P450 2D6; monooxygenase, thioridazine, oxidoreductase; HET: RTZ HEM; 2.10A {Homo sapiens} PDB: 3qm4_A* 2f9q_A*
Probab=30.00 E-value=17 Score=28.21 Aligned_cols=7 Identities=57% Similarity=1.379 Sum_probs=5.0
Q ss_pred CCCCeee
Q 030229 85 PPGPYAW 91 (181)
Q Consensus 85 P~GPyaw 91 (181)
||||+.|
T Consensus 12 PPGP~~l 18 (479)
T 3tbg_A 12 PPGPLPL 18 (479)
T ss_dssp CCCSCCB
T ss_pred CCCCCCc
Confidence 7888654
No 3
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=28.93 E-value=2.2e+02 Score=25.65 Aligned_cols=20 Identities=30% Similarity=0.682 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHH-HHHHHh
Q 030229 158 RERAWAERLAELQR-LEEEKK 177 (181)
Q Consensus 158 ReRaWaeRL~eLqq-lEeekk 177 (181)
.+|...|++.+|++ +|+|.+
T Consensus 520 ~~~~~~e~~~ql~~kme~~~~ 540 (592)
T 1f5n_A 520 KERSYQEHLKQLTEKMENDRV 540 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 45556666665554 555444
No 4
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=28.28 E-value=48 Score=22.07 Aligned_cols=47 Identities=19% Similarity=0.220 Sum_probs=32.2
Q ss_pred CCCCCCCCccccccccCCCCCCeeeeecCC-CCCCCCCC--CCcccccch
Q 030229 67 FPKRRPVEKPRRKRASLRPPGPYAWVQYTP-GQPISPNN--PNQGSVKRR 113 (181)
Q Consensus 67 fPKRRP~~k~rrKRAsLrP~GPyawvq~~P-gepI~~n~--pNeGSVk~R 113 (181)
-||||-+--.+++|.+-..--.-.-|.|.- ||+..+-. |+-|.-+||
T Consensus 6 VPKrK~Sksrr~~RRsh~kl~~p~l~~c~~cG~~~~pH~vc~~CG~Y~gr 55 (60)
T 2zjr_Z 6 VPKKKTSKSKRDMRRSHHALTAPNLTECPQCHGKKLSHHICPNCGYYDGR 55 (60)
T ss_dssp CCSSCCCTTHHHHHTTTCCCCCCCCEECTTTCCEECTTBCCTTTCBSSSB
T ss_pred cCCCCCChHHhhhhcccccccCCCceECCCCCCEeCCceEcCCCCcCCCE
Confidence 699999999998888754333345566754 88776543 566766665
No 5
>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}
Probab=27.54 E-value=13 Score=31.15 Aligned_cols=19 Identities=37% Similarity=0.658 Sum_probs=8.7
Q ss_pred ccCCCCCCeeeeecCC-CCC
Q 030229 81 ASLRPPGPYAWVQYTP-GQP 99 (181)
Q Consensus 81 AsLrP~GPyawvq~~P-gep 99 (181)
.+-.|+||..||+-+| |||
T Consensus 356 ~~~~~~g~~~~~~~~~~~~~ 375 (376)
T 2e1m_A 356 ELTGPGGPAVAIQTVPEGEP 375 (376)
T ss_dssp -------CCEEEEEEEC---
T ss_pred CCcCCCCCeeEEEecCCCCC
Confidence 3678999999999999 776
No 6
>4efa_E V-type proton ATPase subunit E; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_J 2kz9_A
Probab=23.28 E-value=2.5e+02 Score=21.43 Aligned_cols=22 Identities=23% Similarity=0.489 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 030229 116 KKRMRQRRAFILSEAKKRKAQL 137 (181)
Q Consensus 116 kKRm~qr~aFi~aE~kKRkaQ~ 137 (181)
.+.|++=-+||+.|++....++
T Consensus 14 ~~~i~~m~~fI~qEA~eKA~EI 35 (233)
T 4efa_E 14 NDELNKMQAFIRKEAEEKAKEI 35 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4568888899999998766554
No 7
>3p7i_A PHND, subunit of alkylphosphonate ABC transporter; phosphonate binding protein, transport protein; 1.71A {Escherichia coli UTI89} PDB: 3qk6_A 3quj_A* 3s4u_A
Probab=22.93 E-value=2.2e+02 Score=22.38 Aligned_cols=32 Identities=6% Similarity=0.194 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030229 138 QEANRKKRAQRVERKMAAVARERAWAERLAELQRLEEE 175 (181)
Q Consensus 138 ~~A~rrK~~~rvErKMAAVAReRaWaeRL~eLqqlEee 175 (181)
.++.|.+.+..+|.+++++- .|+.+|++..+.
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~ 316 (321)
T 3p7i_A 285 NEQDKLAKTTAIQAQLDDLD------RLNNALSAMSSV 316 (321)
T ss_dssp CHHHHHHHHHHHHHHHHHHH------HHHHHHHHC---
T ss_pred ChHHHHHHHHHHHHHHHHHH------HHHHHHHhhhhh
Confidence 34888889999999988886 355677666554
No 8
>1y71_A Kinase-associated protein B; structural genomics, midwest CE structural genomics, MCSG, protein structure initiative, PS unknown function; 1.95A {Bacillus cereus} SCOP: b.34.16.1
Probab=22.49 E-value=43 Score=26.16 Aligned_cols=27 Identities=33% Similarity=0.591 Sum_probs=18.3
Q ss_pred HHHHHHHHH-HHHHHHH-HHHHHHHHHHH
Q 030229 150 ERKMAAVAR-ERAWAER-LAELQRLEEEK 176 (181)
Q Consensus 150 ErKMAAVAR-eRaWaeR-L~eLqqlEeek 176 (181)
++.+..... +-+||+| |..|++|++|-
T Consensus 100 ~~~~~~L~~~~s~~A~~sL~~L~~LkkeY 128 (130)
T 1y71_A 100 ETQMNSFSEDDSPFAERSLETLQQLKKDY 128 (130)
T ss_dssp HHHHHTTTTCCSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhccCcHHHHHHHHHHHHHHHHh
Confidence 334444444 5789987 78899998873
No 9
>2kgm_A Protein STE5; MAPKKK, STE11 SAM, STE50 SAM, cytoplasm, pheromone response, phosphoprotein, signaling protein; NMR {Synthetic} PDB: 2kgn_A 2l4u_A
Probab=21.64 E-value=45 Score=19.72 Aligned_cols=20 Identities=45% Similarity=0.820 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 030229 158 RERAWAERLAELQRLEEEKK 177 (181)
Q Consensus 158 ReRaWaeRL~eLqqlEeekk 177 (181)
|-.-|+++|+..|+--..+|
T Consensus 4 r~K~Wt~klakfQrss~kKk 23 (24)
T 2kgm_A 4 RGKKWTEKLARFQRSSAKKK 23 (26)
T ss_dssp HHSHHHHHHHHTHHHHHHTT
T ss_pred ccchHHHHHHHHHhcccccc
Confidence 55679999999998766554
No 10
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=19.95 E-value=56 Score=21.80 Aligned_cols=48 Identities=23% Similarity=0.302 Sum_probs=32.1
Q ss_pred CCCCCCCCccccccccCCCCCCeeeeecCC-CCCCCCC--CCCcccccchh
Q 030229 67 FPKRRPVEKPRRKRASLRPPGPYAWVQYTP-GQPISPN--NPNQGSVKRRN 114 (181)
Q Consensus 67 fPKRRP~~k~rrKRAsLrP~GPyawvq~~P-gepI~~n--~pNeGSVk~Rn 114 (181)
-||||-+--.+++|.+-.---.-.-|.|.- ||+..+- -|+-|.-+||.
T Consensus 6 VPKrK~Sksr~~~RRsh~kl~~p~l~~c~~cGe~~~~H~vc~~CG~Y~gr~ 56 (60)
T 3v2d_5 6 VPKKKTSKARRDARRSHHALTPPTLVPCPECKAMKPPHTVCPECGYYAGRK 56 (60)
T ss_dssp CCSSCCCHHHHHHHGGGCCCCCCCCEECTTTCCEECTTSCCTTTCEETTEE
T ss_pred cCcCcCChhhcchhhccccccCCceeECCCCCCeecceEEcCCCCcCCCEE
Confidence 599999988888876532222224677765 8888776 45667777653
Done!