Query 030229
Match_columns 181
No_of_seqs 14 out of 16
Neff 1.7
Searched_HMMs 13730
Date Mon Mar 25 16:59:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030229.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/030229hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1tf5a2 a.172.1.1 (A:571-780) 32.1 64 0.0047 22.4 6.4 51 124-174 116-166 (210)
2 d1nkta2 a.172.1.1 (A:616-835) 21.8 1.2E+02 0.0088 21.0 7.3 31 144-174 146-176 (220)
3 d2zjrz1 g.41.8.5 (Z:2-59) Ribo 16.1 60 0.0043 20.1 3.0 47 67-113 5-54 (58)
4 d1y71a1 b.34.16.1 (A:4-127) Ki 14.4 48 0.0035 23.9 2.5 18 159-176 104-122 (124)
5 d2ho2a1 b.72.1.1 (A:253-285) A 13.5 25 0.0018 20.6 0.6 7 85-91 13-19 (33)
6 d2j0151 g.41.8.5 (5:2-60) Ribo 10.3 62 0.0045 20.0 1.7 47 67-113 5-54 (59)
7 d1lp1a_ a.8.1.1 (A:) Immunoglo 9.4 86 0.0062 19.9 2.2 11 120-130 22-32 (55)
8 d2nr7a1 d.2.1.9 (A:1-192) Puta 9.0 1.3E+02 0.0093 21.4 3.4 13 160-172 180-192 (192)
9 d1tqha_ c.69.1.29 (A:) Carboxy 8.8 56 0.0041 19.3 1.0 7 85-91 1-7 (242)
10 d1fxkc_ a.2.5.1 (C:) Prefoldin 8.4 2.5E+02 0.018 17.7 6.5 44 114-157 88-133 (133)
No 1
>d1tf5a2 a.172.1.1 (A:571-780) Helical scaffold and wing domains of SecA {Bacillus subtilis [TaxId: 1423]}
Probab=32.06 E-value=64 Score=22.37 Aligned_cols=51 Identities=14% Similarity=0.342 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030229 124 AFILSEAKKRKAQLQEANRKKRAQRVERKMAAVARERAWAERLAELQRLEE 174 (181)
Q Consensus 124 aFi~aE~kKRkaQ~~~A~rrK~~~rvErKMAAVAReRaWaeRL~eLqqlEe 174 (181)
.++.........+.....-......+||...=-+=|..|.+-|..+++|-+
T Consensus 116 ~~l~~~~~~~~~~k~~~~~~~~~~~~er~i~L~~ID~~W~~HL~~Md~LR~ 166 (210)
T d1tf5a2 116 ELIMDRIITKYNEKEEQFGKEQMREFEKVIVLRAVDSKWMDHIDAMDQLRQ 166 (210)
T ss_dssp HHHHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 344444444433333334455678999999999999999999999999875
No 2
>d1nkta2 a.172.1.1 (A:616-835) Helical scaffold and wing domains of SecA {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=21.82 E-value=1.2e+02 Score=20.98 Aligned_cols=31 Identities=29% Similarity=0.507 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030229 144 KRAQRVERKMAAVARERAWAERLAELQRLEE 174 (181)
Q Consensus 144 K~~~rvErKMAAVAReRaWaeRL~eLqqlEe 174 (181)
.....+||-..=-+=|..|.+-|..+++|-+
T Consensus 146 ~~~~~~eR~v~L~~ID~~W~eHL~~Md~LR~ 176 (220)
T d1nkta2 146 GAMRQLERNVLLNVIDRKWREHLYEMDYLKE 176 (220)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHhHHHHHHHHHHHH
Confidence 3567889999888999999999999999875
No 3
>d2zjrz1 g.41.8.5 (Z:2-59) Ribosomal protein L32p {Deinococcus radiodurans [TaxId: 1299]}
Probab=16.08 E-value=60 Score=20.06 Aligned_cols=47 Identities=19% Similarity=0.220 Sum_probs=31.9
Q ss_pred CCCCCCCCccccccccCCCCCCeeeeecCC-CCCCCCCC--CCcccccch
Q 030229 67 FPKRRPVEKPRRKRASLRPPGPYAWVQYTP-GQPISPNN--PNQGSVKRR 113 (181)
Q Consensus 67 fPKRRP~~k~rrKRAsLrP~GPyawvq~~P-gepI~~n~--pNeGSVk~R 113 (181)
-||||-+.-.+++|.+-.--.+-.-+.|.- ||++.+-. |+-|--+||
T Consensus 5 VPKrk~SksRr~~RRsh~~l~~p~l~~C~~CG~~~lpHrvC~~CG~YkGr 54 (58)
T d2zjrz1 5 VPKKKTSKSKRDMRRSHHALTAPNLTECPQCHGKKLSHHICPNCGYYDGR 54 (58)
T ss_dssp CCSSCCCTTHHHHHTTTCCCCCCCCEECTTTCCEECTTBCCTTTCBSSSB
T ss_pred CCCCccCcccchhhhhhhhhcCCceeECCCCCCCccceeeCCCCCcCCCE
Confidence 599999998888887643333335667755 88877643 566766665
No 4
>d1y71a1 b.34.16.1 (A:4-127) Kinase-associated protein B {Bacillus cereus [TaxId: 1396]}
Probab=14.44 E-value=48 Score=23.91 Aligned_cols=18 Identities=39% Similarity=0.671 Sum_probs=14.2
Q ss_pred HHHHHHH-HHHHHHHHHHH
Q 030229 159 ERAWAER-LAELQRLEEEK 176 (181)
Q Consensus 159 eRaWaeR-L~eLqqlEeek 176 (181)
+.+||++ |..|++|++|-
T Consensus 104 ~s~~a~~sL~~L~~LkkdY 122 (124)
T d1y71a1 104 DSPFAERSLETLQQLKKDY 122 (124)
T ss_dssp CSHHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHHhh
Confidence 4679887 78899998873
No 5
>d2ho2a1 b.72.1.1 (A:253-285) Amyloid beta A4 precursor protein-binding family B member 1, APBB1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.52 E-value=25 Score=20.65 Aligned_cols=7 Identities=43% Similarity=1.284 Sum_probs=5.9
Q ss_pred CCCCeee
Q 030229 85 PPGPYAW 91 (181)
Q Consensus 85 P~GPyaw 91 (181)
..|+|||
T Consensus 13 ~~G~YYW 19 (33)
T d2ho2a1 13 TSGTYYW 19 (33)
T ss_dssp SSCEEEE
T ss_pred CCCceEE
Confidence 4689999
No 6
>d2j0151 g.41.8.5 (5:2-60) Ribosomal protein L32p {Thermus thermophilus [TaxId: 274]}
Probab=10.26 E-value=62 Score=19.99 Aligned_cols=47 Identities=23% Similarity=0.319 Sum_probs=28.6
Q ss_pred CCCCCCCCccccccccCCCCCCeeeeecCC-CCCCCCCC--CCcccccch
Q 030229 67 FPKRRPVEKPRRKRASLRPPGPYAWVQYTP-GQPISPNN--PNQGSVKRR 113 (181)
Q Consensus 67 fPKRRP~~k~rrKRAsLrP~GPyawvq~~P-gepI~~n~--pNeGSVk~R 113 (181)
-||||-+.-.+++|.+-.---+=.-+.|.- ||+..+-. ||-|.-+||
T Consensus 5 VPKrk~Sksr~~~RRsh~~l~~p~l~~C~~CG~~~~pHrvC~~CG~YkGr 54 (59)
T d2j0151 5 VPKKKTSKARRDARRSHHALTPPTLVPCPECKAMKPPHTVCPECGYYAGR 54 (59)
T ss_dssp CCSSCCCHHHHHHHHGGGCCCCCCCBCCSSSSSCBCTTCBCTTTCCSSSC
T ss_pred CCCCcccchhchhhhccccccCCceeECCCCCCcccceeECCCCCeECCE
Confidence 589999988888876522111113455554 77776654 566666654
No 7
>d1lp1a_ a.8.1.1 (A:) Immunoglobulin-binding protein A modules {Staphylococcus aureus [TaxId: 1280]}
Probab=9.40 E-value=86 Score=19.88 Aligned_cols=11 Identities=45% Similarity=0.558 Sum_probs=8.0
Q ss_pred HHHHHHHHHHH
Q 030229 120 RQRRAFILSEA 130 (181)
Q Consensus 120 ~qr~aFi~aE~ 130 (181)
.||.+||-+-+
T Consensus 22 ~Qrn~fIqSLk 32 (55)
T d1lp1a_ 22 PQKKAFIFSLW 32 (55)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 58889986544
No 8
>d2nr7a1 d.2.1.9 (A:1-192) Putative secretion activator PG0293 {Porphyromonas gingivalis [TaxId: 837]}
Probab=9.03 E-value=1.3e+02 Score=21.41 Aligned_cols=13 Identities=38% Similarity=1.063 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHH
Q 030229 160 RAWAERLAELQRL 172 (181)
Q Consensus 160 RaWaeRL~eLqql 172 (181)
+-|..|+.+|.++
T Consensus 180 ~GW~nR~~~~~~~ 192 (192)
T d2nr7a1 180 RGWLNRLEDIRKL 192 (192)
T ss_dssp HHHHHHHHHGGGC
T ss_pred HHHHHHHHHHhcC
Confidence 5799999988764
No 9
>d1tqha_ c.69.1.29 (A:) Carboxylesterase Est {Bacillus stearothermophilus [TaxId: 1422]}
Probab=8.77 E-value=56 Score=19.29 Aligned_cols=7 Identities=43% Similarity=1.336 Sum_probs=0.0
Q ss_pred CCCCeee
Q 030229 85 PPGPYAW 91 (181)
Q Consensus 85 P~GPyaw 91 (181)
||-||||
T Consensus 1 pp~p~~~ 7 (242)
T d1tqha_ 1 PPKPFFF 7 (242)
T ss_dssp CCCCEEE
T ss_pred CCCCEec
No 10
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=8.39 E-value=2.5e+02 Score=17.69 Aligned_cols=44 Identities=18% Similarity=0.215 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Q 030229 114 NEKKRMRQRRAFILSEAKKRKAQLQEANRKKR--AQRVERKMAAVA 157 (181)
Q Consensus 114 nekKRm~qr~aFi~aE~kKRkaQ~~~A~rrK~--~~rvErKMAAVA 157 (181)
...+-+..|...+....++-..++......-. ...+++.|+|+|
T Consensus 88 eA~~~l~~ri~~l~~~~~~l~~~~~~~~~~i~~l~~~~~~l~~a~a 133 (133)
T d1fxkc_ 88 DAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELLAAVA 133 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Done!