Query 030231
Match_columns 181
No_of_seqs 94 out of 96
Neff 4.4
Searched_HMMs 13730
Date Mon Mar 25 17:02:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030231.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/030231hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2f05a1 a.59.1.1 (A:1-85) Sin3 45.5 15 0.0011 24.0 4.6 46 90-137 27-83 (85)
2 d1s5qb_ a.59.1.1 (B:) Sin3A {M 37.2 13 0.00092 24.6 3.1 44 91-136 31-88 (89)
3 d1elka_ a.118.9.2 (A:) Tom1 pr 35.0 54 0.0039 23.1 6.6 46 63-122 14-59 (153)
4 d1dvpa1 a.118.9.2 (A:1-145) Hr 34.8 44 0.0032 23.3 6.0 30 62-103 6-35 (145)
5 d1fs1b1 a.157.1.1 (B:86-140) C 33.8 20 0.0015 21.9 3.5 24 90-113 26-53 (55)
6 d1xdpa1 a.7.15.1 (A:2-106) Pol 28.7 35 0.0026 22.9 4.4 54 53-120 31-85 (105)
7 d1juqa_ a.118.9.2 (A:) ADP-rib 22.0 1.2E+02 0.0086 21.2 6.5 45 63-121 4-48 (151)
8 d1nexa1 a.157.1.1 (A:116-185) 20.5 46 0.0034 21.0 3.5 24 90-113 27-54 (70)
9 d1mhqa_ a.118.9.2 (A:) ADP-rib 18.7 1.4E+02 0.01 20.5 7.2 30 63-104 3-32 (143)
10 d1szia_ a.24.23.1 (A:) Mannose 17.0 14 0.001 29.0 0.1 26 98-123 123-148 (226)
No 1
>d2f05a1 a.59.1.1 (A:1-85) Sin3B {Mouse (Mus musculus) [TaxId: 10090]}
Probab=45.50 E-value=15 Score=23.96 Aligned_cols=46 Identities=17% Similarity=0.336 Sum_probs=32.5
Q ss_pred ChhHHHHHHHHHHc-----------cCCHHHHHHHHHHHHHhcCCCChHHHHHHhcCCc
Q 030231 90 DYESFVDVSKRVME-----------GRSRQQQQEVVREVLLSMLPPGAPAQFRKLFPPT 137 (181)
Q Consensus 90 gYdglVe~a~~lm~-----------grs~~~q~~~v~rVL~sl~Pp~~p~~fr~lf~P~ 137 (181)
-|..|+++-+..+. +.+..+-.+.|...|..- |-+..-|..++|.+
T Consensus 27 ~Y~~FL~il~~f~~~~i~~~~~~~~~~~~~ev~~~V~~Lf~~h--pdLl~~F~~FLP~~ 83 (85)
T d2f05a1 27 IYRSFLEILHTYQKEQLHTKGRPFRGMSEEEVFTEVANLFRGQ--EDLLSEFGQFLPEA 83 (85)
T ss_dssp HHHHHHHHHHHHHHHHSSSSSSSSCCCCHHHHHHHHHHHTTTC--HHHHHHHHHHSCGG
T ss_pred HHHHHHHHHHHHHHhhccccccccccCCHHHHHHHHHHHHccC--HHHHHHHHHHCccc
Confidence 39999999998864 345666666776666554 45667788877654
No 2
>d1s5qb_ a.59.1.1 (B:) Sin3A {Mouse (Mus musculus) [TaxId: 10090]}
Probab=37.24 E-value=13 Score=24.65 Aligned_cols=44 Identities=14% Similarity=0.326 Sum_probs=28.1
Q ss_pred hhHHHHHHHHHHcc--------------CCHHHHHHHHHHHHHhcCCCChHHHHHHhcCC
Q 030231 91 YESFVDVSKRVMEG--------------RSRQQQQEVVREVLLSMLPPGAPAQFRKLFPP 136 (181)
Q Consensus 91 YdglVe~a~~lm~g--------------rs~~~q~~~v~rVL~sl~Pp~~p~~fr~lf~P 136 (181)
|+.|+++=+..+.+ -+..+-.+.|...|..- |-+..-|..++|.
T Consensus 31 Y~~FL~il~~f~~~~~~~~~~~~~~~~~~~~~~v~~rV~~Lf~~h--pdLi~~Fn~FLPe 88 (89)
T d1s5qb_ 31 YKAFLEILHTYQKEQRNAKEAGGNYTPALTEQEVYAQVARLFKNQ--EDLLSEFGQFLPD 88 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCSCCCCSCCHHHHHHHHHHHSCSC--HHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHhhhccccccccccccccHHHHHHHHHHHHccC--HHHHHHHHhhCCC
Confidence 99999998888643 24555566665555442 3455666777654
No 3
>d1elka_ a.118.9.2 (A:) Tom1 protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=35.01 E-value=54 Score=23.14 Aligned_cols=46 Identities=13% Similarity=0.258 Sum_probs=32.3
Q ss_pred HHHHHHHcCCCCCcchhhccccccCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHhcC
Q 030231 63 ARKMEKFASPAKSKTETKKKRWFDFGYDYESFVDVSKRVMEGRSRQQQQEVVREVLLSML 122 (181)
Q Consensus 63 ~rkm~~~~G~~~~~~~~~~~~~~~~~~gYdglVe~a~~lm~grs~~~q~~~v~rVL~sl~ 122 (181)
-+.+++++...... ++++.++|+|..|.... ...+++++-+...|.
T Consensus 14 ~~~vekAT~~~l~~------------~dw~~il~icD~In~~~--~~~k~a~ral~krL~ 59 (153)
T d1elka_ 14 GQRIEKATDGSLQS------------EDWALNMEICDIINETE--EGPKDALRAVKKRIV 59 (153)
T ss_dssp HHHHHHHTCTTCSS------------CCHHHHHHHHHHHHHSS--SHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCCc------------ccHHHHHHHHHHHhCCC--cCHHHHHHHHHHHHc
Confidence 35577788766543 79999999999997643 345666666666665
No 4
>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=34.79 E-value=44 Score=23.30 Aligned_cols=30 Identities=17% Similarity=0.347 Sum_probs=24.0
Q ss_pred HHHHHHHHcCCCCCcchhhccccccCCCChhHHHHHHHHHHc
Q 030231 62 FARKMEKFASPAKSKTETKKKRWFDFGYDYESFVDVSKRVME 103 (181)
Q Consensus 62 F~rkm~~~~G~~~~~~~~~~~~~~~~~~gYdglVe~a~~lm~ 103 (181)
|-..+.+++...... +|++.++++|..|..
T Consensus 6 ~~~~iekAT~~~~~~------------~dw~~il~icD~I~~ 35 (145)
T d1dvpa1 6 FCKNLENATSHLRLE------------PDWPSILLICDEINQ 35 (145)
T ss_dssp HHHHHHHHHCTTCSS------------CCHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCcCCCC------------CCHHHHHHHHHHHhC
Confidence 556778888766544 899999999999975
No 5
>d1fs1b1 a.157.1.1 (B:86-140) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=33.84 E-value=20 Score=21.89 Aligned_cols=24 Identities=17% Similarity=0.511 Sum_probs=18.1
Q ss_pred ChhHHHHHHHHH----HccCCHHHHHHH
Q 030231 90 DYESFVDVSKRV----MEGRSRQQQQEV 113 (181)
Q Consensus 90 gYdglVe~a~~l----m~grs~~~q~~~ 113 (181)
+.++|++++-+- ++|+|++|.|+.
T Consensus 26 ~I~~Lldl~c~~vA~~ikgKt~eeiR~~ 53 (55)
T d1fs1b1 26 DIKGLLDVTCKTVANMIKGKTPEEIRKT 53 (55)
T ss_dssp TCHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 577888876554 479999998864
No 6
>d1xdpa1 a.7.15.1 (A:2-106) Polyphosphate kinase, PPK {Escherichia coli [TaxId: 562]}
Probab=28.68 E-value=35 Score=22.90 Aligned_cols=54 Identities=9% Similarity=0.239 Sum_probs=33.2
Q ss_pred hHHHH-HHHHHHHHHHHHcCCCCCcchhhccccccCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHh
Q 030231 53 FFEKA-FMTLFARKMEKFASPAKSKTETKKKRWFDFGYDYESFVDVSKRVMEGRSRQQQQEVVREVLLS 120 (181)
Q Consensus 53 ~lDk~-~i~lF~rkm~~~~G~~~~~~~~~~~~~~~~~~gYdglVe~a~~lm~grs~~~q~~~v~rVL~s 120 (181)
.+||+ |+++|+..|-|+--... .|.-..++....--.|.+|.+|-+.+......
T Consensus 31 llERlrFl~I~ssNLDEFFmVRV--------------AgLk~q~~~~~~~~dg~tp~e~L~~I~~~v~~ 85 (105)
T d1xdpa1 31 LIERMRFLGIYSNNLDEFYKVRF--------------AELKRRIIISEEQGSNSHSRHLLGKIQSRVLK 85 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHH--------------HHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHhhH--------------HHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHH
Confidence 47777 88899988888865432 12333444444433588888776666554443
No 7
>d1juqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.04 E-value=1.2e+02 Score=21.15 Aligned_cols=45 Identities=16% Similarity=0.251 Sum_probs=28.8
Q ss_pred HHHHHHHcCCCCCcchhhccccccCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHhc
Q 030231 63 ARKMEKFASPAKSKTETKKKRWFDFGYDYESFVDVSKRVMEGRSRQQQQEVVREVLLSM 121 (181)
Q Consensus 63 ~rkm~~~~G~~~~~~~~~~~~~~~~~~gYdglVe~a~~lm~grs~~~q~~~v~rVL~sl 121 (181)
-..+.+++...... ++++.++|+|..+.... ...+++++-+...|
T Consensus 4 e~~i~kAT~~~l~~------------~dw~~ileicD~In~~~--~~~k~a~rai~krl 48 (151)
T d1juqa_ 4 ESWLNKATNPSNRQ------------EDWEYIIGFCDQINKEL--EGPQIAVRLLAHKI 48 (151)
T ss_dssp HHHHHHHTCTTCSS------------CCHHHHHHHHHHHHHST--THHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCC------------cCHHHHHHHHHHHhcCC--ccHHHHHHHHHHHH
Confidence 34566777655433 78999999999998543 23445555544444
No 8
>d1nexa1 a.157.1.1 (A:116-185) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=20.54 E-value=46 Score=20.96 Aligned_cols=24 Identities=21% Similarity=0.477 Sum_probs=17.7
Q ss_pred ChhHHHHHHHHH----HccCCHHHHHHH
Q 030231 90 DYESFVDVSKRV----MEGRSRQQQQEV 113 (181)
Q Consensus 90 gYdglVe~a~~l----m~grs~~~q~~~ 113 (181)
++++|++++-+- ++|+|++|.++.
T Consensus 27 ~I~~Ll~l~c~~vA~~ikgkt~eeiR~~ 54 (70)
T d1nexa1 27 NIKPLLDAGCKVVAEMIRGRSPEEIRRT 54 (70)
T ss_dssp TCHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHccCCHHHHHHH
Confidence 578888876554 369999987754
No 9
>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.70 E-value=1.4e+02 Score=20.50 Aligned_cols=30 Identities=17% Similarity=0.278 Sum_probs=22.5
Q ss_pred HHHHHHHcCCCCCcchhhccccccCCCChhHHHHHHHHHHcc
Q 030231 63 ARKMEKFASPAKSKTETKKKRWFDFGYDYESFVDVSKRVMEG 104 (181)
Q Consensus 63 ~rkm~~~~G~~~~~~~~~~~~~~~~~~gYdglVe~a~~lm~g 104 (181)
-..+.+++...... ++++.++++|..|...
T Consensus 3 e~liekAT~~~~~~------------~dw~~il~icD~I~~~ 32 (143)
T d1mhqa_ 3 ELWLNKATDPSMSE------------QDWSAIQNFCEQVNTD 32 (143)
T ss_dssp HHHHHHHHCTTCSS------------CCHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCCCCC------------cCHHHHHHHHHHHHcC
Confidence 45677788765543 7999999999999753
No 10
>d1szia_ a.24.23.1 (A:) Mannose-6-phosphate receptor binding protein 1 (Tip47), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=16.98 E-value=14 Score=29.02 Aligned_cols=26 Identities=15% Similarity=0.044 Sum_probs=15.5
Q ss_pred HHHHHccCCHHHHHHHHHHHHHhcCC
Q 030231 98 SKRVMEGRSRQQQQEVVREVLLSMLP 123 (181)
Q Consensus 98 a~~lm~grs~~~q~~~v~rVL~sl~P 123 (181)
++.|..-++-.+|-+.+-..|.+-+-
T Consensus 123 srtL~~ar~LtqQLqstc~~L~ssiq 148 (226)
T d1szia_ 123 ARALSMFRDITQQLQSMCVALGASIQ 148 (226)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44555566666666666666655543
Done!