BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030232
(181 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Q7S|A Chain A, Crystal Structure Of Bit1
pdb|1Q7S|B Chain B, Crystal Structure Of Bit1
Length = 117
Score = 132 bits (332), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 65/115 (56%), Positives = 83/115 (72%), Gaps = 1/115 (0%)
Query: 67 DFKMVLVVRNDLKMGKGKIAAQCSHATLGLYKKVLYRAPKALNRWEMCAQPKVVLKIESE 126
++KM+LVVRNDLKMGKGK+AAQCSHA + YK++ R P+ L +WE C QPKVV+K E
Sbjct: 2 EYKMILVVRNDLKMGKGKVAAQCSHAAVSAYKQIQRRNPEMLKQWEYCGQPKVVVKAPDE 61
Query: 127 EDMLVLQERAKSLKLPTHITIDAGRTQIAPNSRTVMAI-LGPVEVVDDVTGGLKL 180
E ++ L AK L L + DAGRTQIAP S+TV+ I GP +++D VTG LKL
Sbjct: 62 ETLIALLAHAKMLGLTVSLIQDAGRTQIAPGSQTVLGIGPGPADLIDKVTGHLKL 116
>pdb|1XTY|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Peptidyl-Trna
Hydrolase
pdb|1XTY|B Chain B, Crystal Structure Of Sulfolobus Solfataricus Peptidyl-Trna
Hydrolase
pdb|1XTY|C Chain C, Crystal Structure Of Sulfolobus Solfataricus Peptidyl-Trna
Hydrolase
pdb|1XTY|D Chain D, Crystal Structure Of Sulfolobus Solfataricus Peptidyl-Trna
Hydrolase
Length = 120
Score = 93.6 bits (231), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 50/119 (42%), Positives = 77/119 (64%), Gaps = 5/119 (4%)
Query: 68 FKMVLVVRNDLKMGKGKIAAQCSHATLGLYKKVL----YRAPKALNRWEMCAQPKVVLKI 123
KMV+VVR+D+KMGKGKIAAQ +HA + L ++ R + LN W QPK+++K+
Sbjct: 2 IKMVIVVRSDIKMGKGKIAAQVAHAAVTLVVSIINSNNLRWKEWLNEWLHQGQPKIIVKV 61
Query: 124 ESEEDMLVLQERAKSLKLPTHITIDAGRTQIAPNSRTVMAI-LGPVEVVDDVTGGLKLL 181
S ++++ ++A+++ LP I DAG+TQ+ P + T + I P +VD +TG LKLL
Sbjct: 62 NSLDEIISRAKKAETMNLPFSIIEDAGKTQLEPGTITCLGIGPAPENLVDSITGDLKLL 120
>pdb|2ZV3|A Chain A, Crystal Structure Of Project Mj0051 From
Methanocaldococcus Jannaschii Dsm 2661
pdb|2ZV3|B Chain B, Crystal Structure Of Project Mj0051 From
Methanocaldococcus Jannaschii Dsm 2661
pdb|2ZV3|C Chain C, Crystal Structure Of Project Mj0051 From
Methanocaldococcus Jannaschii Dsm 2661
pdb|2ZV3|D Chain D, Crystal Structure Of Project Mj0051 From
Methanocaldococcus Jannaschii Dsm 2661
pdb|2ZV3|E Chain E, Crystal Structure Of Project Mj0051 From
Methanocaldococcus Jannaschii Dsm 2661
pdb|2ZV3|F Chain F, Crystal Structure Of Project Mj0051 From
Methanocaldococcus Jannaschii Dsm 2661
pdb|2ZV3|G Chain G, Crystal Structure Of Project Mj0051 From
Methanocaldococcus Jannaschii Dsm 2661
pdb|2ZV3|H Chain H, Crystal Structure Of Project Mj0051 From
Methanocaldococcus Jannaschii Dsm 2661
pdb|2ZV3|I Chain I, Crystal Structure Of Project Mj0051 From
Methanocaldococcus Jannaschii Dsm 2661
Length = 115
Score = 93.2 bits (230), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 51/116 (43%), Positives = 74/116 (63%), Gaps = 3/116 (2%)
Query: 68 FKMVLVVRNDLKMGKGKIAAQCSHATLGLYKKVLYRAPKALNRWEMCAQPKVVLKIESEE 127
KMV+V+RNDL MGKGK+ AQ HA + + + P+A++ W Q KVV+K+ SE+
Sbjct: 1 MKMVVVIRNDLGMGKGKMVAQGGHAIIEAFLDAKRKNPRAVDEWLREGQKKVVVKVNSEK 60
Query: 128 DMLVLQERAKSLKLPTHITIDAGRTQIAPNSRTVMAILGPV--EVVDDVTGGLKLL 181
+++ + +A+S LP I DAG TQ+ P + T +AI GP E +D +TG LKLL
Sbjct: 61 ELIDIYNKARSEGLPCSIIRDAGHTQLEPGTLTAVAI-GPEKDEKIDKITGHLKLL 115
>pdb|1RZW|A Chain A, The Solution Structure Of The Archaeglobus Fulgidis
Protein Af2095. Northeast Structural Genomics Consortium
Target Gr4
pdb|3ERJ|A Chain A, Crystal Structure Of The Peptidyl-Trna Hydrolase Af2095
From Archaeglobus Fulgidis. Northeast Structural
Genomics Consortium Target Gr4
pdb|3ERJ|B Chain B, Crystal Structure Of The Peptidyl-Trna Hydrolase Af2095
From Archaeglobus Fulgidis. Northeast Structural
Genomics Consortium Target Gr4
Length = 123
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/117 (41%), Positives = 73/117 (62%), Gaps = 8/117 (6%)
Query: 68 FKMVLVVRNDLKMGKGKIAAQCSHATLGLYKKVLYRAPKALNR-WEMCAQPKVVLKIESE 126
K V+VVR+DLK+ +GK+A Q +HA + Y ++ +L R W Q KVVLK++S
Sbjct: 3 LKQVIVVRDDLKLSRGKLAVQVAHAAIIGY----LKSDSSLRRKWLDEGQKKVVLKVKSL 58
Query: 127 EDMLVLQERAKSLKLPTHITIDAGRTQIAPNSRTVMAILGPVEV--VDDVTGGLKLL 181
E++L ++ +A+SL L T + DAG T++ P + T + I GP E +D VTG L LL
Sbjct: 59 EELLGIKHKAESLGLVTGLVQDAGLTEVPPGTITAVVI-GPDEERKIDKVTGNLPLL 114
>pdb|1RLK|A Chain A, Structure Of Conserved Protein Of Unknown Function Ta0108
From Thermoplasma Acidophilum
Length = 117
Score = 71.2 bits (173), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 64/115 (55%), Gaps = 3/115 (2%)
Query: 69 KMVLVVRNDLKMGKGKIAAQCSHATLGLYKKVLYRAPKALNRWEMCAQPKVVLKIESEED 128
KMV+ VR DL MGKGKIAAQ +HA + + + N W Q K+V+K+ ++
Sbjct: 4 KMVIAVRKDLDMGKGKIAAQVAHAAVTCAIRSMKINRDVFNEWYDEGQRKIVVKVNDLDE 63
Query: 129 MLVLQERAKSLKLPTHITIDAGRTQIAPNSRTVMAILGP--VEVVDDVTGGLKLL 181
++ ++ A S+ + I D G TQ+ P + T + LGP E +D +TG KLL
Sbjct: 64 IMEIKRMADSMGIVNEIVQDRGYTQVEPGTITCIG-LGPDEEEKLDKITGKYKLL 117
>pdb|1WN2|A Chain A, Crystal Structure Of Project Id Ph1539 From Pyrococcus
Horikoshii Ot3
pdb|2D3K|A Chain A, Structural Study On Project Id Ph1539 From Pyrococcus
Horikoshii Ot3
pdb|2D3K|B Chain B, Structural Study On Project Id Ph1539 From Pyrococcus
Horikoshii Ot3
Length = 121
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/115 (42%), Positives = 70/115 (60%), Gaps = 1/115 (0%)
Query: 68 FKMVLVVRNDLKMGKGKIAAQCSHATLGLYKKVLYRAPKALNRWEMCAQPKVVLKIESEE 127
+K V+V R DLK+ KGK+AAQ +H + + + + W Q KVV+K+ESEE
Sbjct: 7 YKQVIVARADLKLSKGKLAAQVAHGAVTAAFEAYKKKREWFEAWFREGQKKVVVKVESEE 66
Query: 128 DMLVLQERAKSLKLPTHITIDAGRTQIAPNSRTVMAI-LGPVEVVDDVTGGLKLL 181
++ L+ A+ L LP + DAG T+I P + TV+A+ P E+VD VTG LKLL
Sbjct: 67 ELFKLKAEAEKLGLPNALIRDAGLTEIPPGTVTVLAVGPAPEEIVDKVTGNLKLL 121
>pdb|3TQW|A Chain A, Structure Of A Abc Transporter, Periplasmic
Substrate-Binding Protein From Coxiella Burnetii
pdb|3TQW|B Chain B, Structure Of A Abc Transporter, Periplasmic
Substrate-Binding Protein From Coxiella Burnetii
Length = 240
Score = 32.3 bits (72), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Query: 95 GLYKKVLYRAPKALNRWEMCAQPKVVLKIESEEDMLVLQERAKSLKLPTHITIDAGRTQI 154
GLY K + AL + + A+ V +E L+L E+A+ ++L TH+TI+A I
Sbjct: 87 GLYSKKI----TALTQLKTGAKIAVPSDPSNEARALLLLEKAQLIQLKTHVTINATPXDI 142
Query: 155 APNSR 159
A N +
Sbjct: 143 ASNPK 147
>pdb|3QT8|A Chain A, Crystal Structure Of Mutant S192a Staphylococcus
Epidermidis Mevalonate Diphosphate Decarboxylase
Complexed With Inhibitor 6- Fmvapp
pdb|3QT8|B Chain B, Crystal Structure Of Mutant S192a Staphylococcus
Epidermidis Mevalonate Diphosphate Decarboxylase
Complexed With Inhibitor 6- Fmvapp
pdb|4DPU|A Chain A, Crystal Structure Of Staphylococcus Epidermidis S192a
Mevalonate Diphosphate Decarboxylase Complexed With
Inhibitor 6-Fmvapp And Atpgs
pdb|4DPU|B Chain B, Crystal Structure Of Staphylococcus Epidermidis S192a
Mevalonate Diphosphate Decarboxylase Complexed With
Inhibitor 6-Fmvapp And Atpgs
pdb|4DPX|A Chain A, Crystal Structure Of S192a Staphylococcus Epidermidis
Mevalonate Diphosphate Decarboxylase
pdb|4DPX|B Chain B, Crystal Structure Of S192a Staphylococcus Epidermidis
Mevalonate Diphosphate Decarboxylase
pdb|4DPY|A Chain A, Crystal Structure Of Staphylococcus Epidermidis S192a
Mevalonate Diphosphate Decarboxylase Complexed With
Inhibitor Dpgp
pdb|4DPY|B Chain B, Crystal Structure Of Staphylococcus Epidermidis S192a
Mevalonate Diphosphate Decarboxylase Complexed With
Inhibitor Dpgp
Length = 332
Score = 27.3 bits (59), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 20/38 (52%)
Query: 113 MCAQPKVVLKIESEEDMLVLQERAKSLKLPTHITIDAG 150
+ AQP ++ D + + E+ + LP + T+DAG
Sbjct: 253 LGAQPPFTYLVQESYDAMAIVEQCRKANLPCYFTMDAG 290
>pdb|3QT5|A Chain A, Crystal Structure Of Staphylococcus Epidermidis Mevalonate
Diphosphate Decarboxylase
pdb|3QT5|B Chain B, Crystal Structure Of Staphylococcus Epidermidis Mevalonate
Diphosphate Decarboxylase
pdb|3QT6|A Chain A, Crystal Structure Of Staphylococcus Epidermidis Mevalonate
Diphosphate Decarboxylase Complexed With Inhibitor Dpgp
pdb|3QT6|B Chain B, Crystal Structure Of Staphylococcus Epidermidis Mevalonate
Diphosphate Decarboxylase Complexed With Inhibitor Dpgp
pdb|3QT7|A Chain A, Crystal Structure Of Staphylococcus Epidermidis Mevalonate
Diphosphate Decarboxylase Complexed With Inhibitor
6-Fmvapp
pdb|3QT7|B Chain B, Crystal Structure Of Staphylococcus Epidermidis Mevalonate
Diphosphate Decarboxylase Complexed With Inhibitor
6-Fmvapp
pdb|4DPT|A Chain A, Crystal Structure Of Staphylococcus Epidermidis Mevalonate
Diphosphate Decarboxylase Complexed With Inhibitor
6-Fmvapp And Atpgs
pdb|4DPT|B Chain B, Crystal Structure Of Staphylococcus Epidermidis Mevalonate
Diphosphate Decarboxylase Complexed With Inhibitor
6-Fmvapp And Atpgs
pdb|4DU7|A Chain A, Crystal Structure Of Staphylococcus Epidermidis Mevalonate
Diphosphate Decarboxylase Complexed With Substrate
Mevalonate Diphosphate
pdb|4DU7|B Chain B, Crystal Structure Of Staphylococcus Epidermidis Mevalonate
Diphosphate Decarboxylase Complexed With Substrate
Mevalonate Diphosphate
Length = 332
Score = 27.3 bits (59), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 20/38 (52%)
Query: 113 MCAQPKVVLKIESEEDMLVLQERAKSLKLPTHITIDAG 150
+ AQP ++ D + + E+ + LP + T+DAG
Sbjct: 253 LGAQPPFTYLVQESYDAMAIVEQCRKANLPCYFTMDAG 290
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.139 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,505,393
Number of Sequences: 62578
Number of extensions: 139376
Number of successful extensions: 299
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 283
Number of HSP's gapped (non-prelim): 9
length of query: 181
length of database: 14,973,337
effective HSP length: 93
effective length of query: 88
effective length of database: 9,153,583
effective search space: 805515304
effective search space used: 805515304
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 48 (23.1 bits)