BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030232
(181 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9Y3E5|PTH2_HUMAN Peptidyl-tRNA hydrolase 2, mitochondrial OS=Homo sapiens GN=PTRH2
PE=1 SV=1
Length = 179
Score = 140 bits (354), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 78/166 (46%), Positives = 99/166 (59%), Gaps = 8/166 (4%)
Query: 19 FGYCIGKGCPACFFVSVRRAKNAAVANENKKNKAKEPLEIEKLADILDD---FKMVLVVR 75
G +G C C S+R K +K + E A IL D +KM+LVVR
Sbjct: 17 LGLAVGVACGMCLGWSLR----VCFGMLPKSKTSKTHTDTESEASILGDSGEYKMILVVR 72
Query: 76 NDLKMGKGKIAAQCSHATLGLYKKVLYRAPKALNRWEMCAQPKVVLKIESEEDMLVLQER 135
NDLKMGKGK+AAQCSHA + YK++ R P+ L +WE C QPKVV+K EE ++ L
Sbjct: 73 NDLKMGKGKVAAQCSHAAVSAYKQIQRRNPEMLKQWEYCGQPKVVVKAPDEETLIALLAH 132
Query: 136 AKSLKLPTHITIDAGRTQIAPNSRTVMAI-LGPVEVVDDVTGGLKL 180
AK L L + DAGRTQIAP S+TV+ I GP +++D VTG LKL
Sbjct: 133 AKMLGLTVSLIQDAGRTQIAPGSQTVLGIGPGPADLIDKVTGHLKL 178
>sp|Q8R2Y8|PTH2_MOUSE Peptidyl-tRNA hydrolase 2, mitochondrial OS=Mus musculus GN=Ptrh2
PE=2 SV=1
Length = 181
Score = 139 bits (351), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 75/161 (46%), Positives = 99/161 (61%), Gaps = 6/161 (3%)
Query: 24 GKGCPACFFVSVRRAKNAAVANENKKNKAKEPLEIEKLADILDD---FKMVLVVRNDLKM 80
G C C +R + + +N ++A E A IL + +KM+LVVR DLKM
Sbjct: 22 GVACGMCLGWGLR--SHLGMFPQNSTSEANRDTETGTEASILGESGEYKMILVVRTDLKM 79
Query: 81 GKGKIAAQCSHATLGLYKKVLYRAPKALNRWEMCAQPKVVLKIESEEDMLVLQERAKSLK 140
GKGK+AAQCSHA + YK+ R+P+ L WE C QPKVV+K E+ ++ L AK+L
Sbjct: 80 GKGKVAAQCSHAAVSAYKQTQRRSPQVLKEWEYCGQPKVVVKAPDEDTLIQLLTHAKTLG 139
Query: 141 LPTHITIDAGRTQIAPNSRTVMAI-LGPVEVVDDVTGGLKL 180
L + DAGRTQI P SRTV+ I GPVE++D+VTG LKL
Sbjct: 140 LTVSLIQDAGRTQIEPGSRTVLGIGPGPVELIDEVTGHLKL 180
>sp|Q3ZBL5|PTH2_BOVIN Peptidyl-tRNA hydrolase 2, mitochondrial OS=Bos taurus GN=PTRH2
PE=2 SV=1
Length = 179
Score = 133 bits (334), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 70/128 (54%), Positives = 87/128 (67%), Gaps = 4/128 (3%)
Query: 57 EIEKLADILDD---FKMVLVVRNDLKMGKGKIAAQCSHATLGLYKKVLYRAPKALNRWEM 113
+ E A IL + +KM+LVVRNDLKMGKGK+AAQCSHA + YK++ R P+ L WE
Sbjct: 51 DTETEASILGESGEYKMILVVRNDLKMGKGKVAAQCSHAAVSAYKQIQRRNPELLKEWEY 110
Query: 114 CAQPKVVLKIESEEDMLVLQERAKSLKLPTHITIDAGRTQIAPNSRTVMAI-LGPVEVVD 172
C QPKVV+K EE ++ L AK L L + DAGRTQIAP SRTV+ I GP +++D
Sbjct: 111 CGQPKVVVKAPDEETLVELLTHAKVLGLTVSLIQDAGRTQIAPGSRTVLGIGPGPADLID 170
Query: 173 DVTGGLKL 180
VTG LKL
Sbjct: 171 KVTGHLKL 178
>sp|O97067|PTH2_DROME Probable peptidyl-tRNA hydrolase 2 OS=Drosophila melanogaster
GN=CG1307 PE=2 SV=2
Length = 186
Score = 125 bits (313), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 61/118 (51%), Positives = 84/118 (71%), Gaps = 3/118 (2%)
Query: 66 DDFKMVLVVRNDLKMGKGKIAAQCSHATLGLYKKVLYRAPKALNRWEMCAQPKVVLKIES 125
D+FKMVLVVRNDLKMGKGKIAAQC H +G Y++ + R P+ L WE C K+ +++ES
Sbjct: 70 DNFKMVLVVRNDLKMGKGKIAAQCGHGAVGAYQRAVVRTPRLLRSWENCGCAKIAVRVES 129
Query: 126 EEDMLVLQERAKSLKLPTHITIDAGRTQIAPNSRTVMAILGPVEV--VDDVTGGLKLL 181
E +++ +++ A+ +L T + DAGRTQI NS+TV+A+ GP +D VTG LKLL
Sbjct: 130 EAELMAIKKEAERQQLNTCLIRDAGRTQIEANSKTVLAV-GPAAAADIDRVTGHLKLL 186
>sp|A4YD82|PTH_METS5 Peptidyl-tRNA hydrolase OS=Metallosphaera sedula (strain ATCC 51363
/ DSM 5348) GN=pth PE=3 SV=1
Length = 117
Score = 98.2 bits (243), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 54/117 (46%), Positives = 75/117 (64%), Gaps = 3/117 (2%)
Query: 68 FKMVLVVRNDLKMGKGKIAAQCSHATLGLYKKVLYRAP--KALNRWEMCAQPKVVLKIES 125
KMV++VR D+ MGKGKIAAQ +HA + L + R+ L+ W QPKVV+K+ S
Sbjct: 1 MKMVVMVRTDINMGKGKIAAQVAHAAVSLVLDCMSRSSWRDWLDSWLHEGQPKVVVKVSS 60
Query: 126 EEDMLVLQERAKSLKLPTHITIDAGRTQIAPNSRTVMAI-LGPVEVVDDVTGGLKLL 181
ED+L ++A+S LPT + DAGRTQ+ P + T I GP +++D +TG LKLL
Sbjct: 61 LEDLLSRVDKARSQGLPTTVISDAGRTQVEPGTVTCAGIGPGPDDLIDKITGDLKLL 117
>sp|Q54ZD0|PTH2_DICDI Probable peptidyl-tRNA hydrolase 2 OS=Dictyostelium discoideum
GN=pth2 PE=3 SV=1
Length = 210
Score = 95.9 bits (237), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 57/128 (44%), Positives = 79/128 (61%), Gaps = 2/128 (1%)
Query: 54 EPLEIEKLADILDDFKMVLVVRNDLKMGKGKIAAQCSHATLGLYKKVLYRAPKALNRWEM 113
+ EIE +I D K VLV+R DL M KGKI AQC HA+LG +K L + K L +WE
Sbjct: 83 DDYEIEYDEEI-GDCKQVLVIRTDLGMTKGKIIAQCCHASLGARQKALKDSKKVLRQWEN 141
Query: 114 CAQPKVVLKIESEEDMLVLQERAKSLKLPTHITIDAGRTQIAPNSRTVMAI-LGPVEVVD 172
K+ LK S+E+++ L+ +AK L + +++ +D+G TQI S TV+A+ P E VD
Sbjct: 142 FGCAKITLKANSKEELVDLRNKAKELGVVSYLVLDSGHTQIPSGSATVLAVGPAPKEAVD 201
Query: 173 DVTGGLKL 180
VT LKL
Sbjct: 202 AVTKHLKL 209
>sp|O76387|PTH2_CAEEL Probable peptidyl-tRNA hydrolase 2 OS=Caenorhabditis elegans
GN=C24G6.8 PE=3 SV=1
Length = 316
Score = 95.1 bits (235), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/116 (48%), Positives = 70/116 (60%), Gaps = 2/116 (1%)
Query: 68 FKMVLVVRNDLKMGKGKIAAQCSHATLGLYKKVLY--RAPKALNRWEMCAQPKVVLKIES 125
KMVLV LKMG GKIAAQ HATLG+Y++ + A+ W Q K+V+K +S
Sbjct: 201 HKMVLVANMSLKMGTGKIAAQVGHATLGVYRQAMNSENGQNAIAAWTRHGQVKIVVKGQS 260
Query: 126 EEDMLVLQERAKSLKLPTHITIDAGRTQIAPNSRTVMAILGPVEVVDDVTGGLKLL 181
E ++ L + AK ++ DAG TQI SRTV+ I G VE VD VTGGLKLL
Sbjct: 261 TEQLMDLCKVAKDAGCYYYLVQDAGYTQIPAGSRTVLGIFGTVEQVDSVTGGLKLL 316
>sp|Q976I0|PTH_SULTO Peptidyl-tRNA hydrolase OS=Sulfolobus tokodaii (strain DSM 16993 /
JCM 10545 / NBRC 100140 / 7) GN=pth PE=3 SV=1
Length = 121
Score = 94.7 bits (234), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/118 (47%), Positives = 75/118 (63%), Gaps = 5/118 (4%)
Query: 69 KMVLVVRNDLKMGKGKIAAQCSHATLGLYKKVLYRA----PKALNRWEMCAQPKVVLKIE 124
KMV+VVR DL MGKGKIAAQ +HA + L +L + + L +W QPK+V+K+
Sbjct: 4 KMVIVVRTDLDMGKGKIAAQVAHAAVSLVLDILNSSNSLWKEWLYKWLEEGQPKIVVKVP 63
Query: 125 SEEDMLVLQERAKSLKLPTHITIDAGRTQIAPNSRTVMAI-LGPVEVVDDVTGGLKLL 181
S +++ E+A L LPT I DAG+TQI P + T + I PVE+VD +TG LKLL
Sbjct: 64 SLDELNKRYEKAIELNLPTTIIQDAGKTQIEPGTITCIGIGPAPVELVDKITGDLKLL 121
>sp|Q980V1|PTH_SULSO Peptidyl-tRNA hydrolase OS=Sulfolobus solfataricus (strain ATCC
35092 / DSM 1617 / JCM 11322 / P2) GN=pth PE=1 SV=1
Length = 120
Score = 94.0 bits (232), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 50/119 (42%), Positives = 77/119 (64%), Gaps = 5/119 (4%)
Query: 68 FKMVLVVRNDLKMGKGKIAAQCSHATLGLYKKVL----YRAPKALNRWEMCAQPKVVLKI 123
KMV+VVR+D+KMGKGKIAAQ +HA + L ++ R + LN W QPK+++K+
Sbjct: 2 IKMVIVVRSDIKMGKGKIAAQVAHAAVTLVVSIINSNNLRWKEWLNEWLHQGQPKIIVKV 61
Query: 124 ESEEDMLVLQERAKSLKLPTHITIDAGRTQIAPNSRTVMAI-LGPVEVVDDVTGGLKLL 181
S ++++ ++A+++ LP I DAG+TQ+ P + T + I P +VD +TG LKLL
Sbjct: 62 NSLDEIISRAKKAETMNLPFSIIEDAGKTQLEPGTITCLGIGPAPENLVDSITGDLKLL 120
>sp|Q60363|PTH_METJA Peptidyl-tRNA hydrolase OS=Methanocaldococcus jannaschii (strain
ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
GN=pth PE=1 SV=1
Length = 115
Score = 93.2 bits (230), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 51/116 (43%), Positives = 74/116 (63%), Gaps = 3/116 (2%)
Query: 68 FKMVLVVRNDLKMGKGKIAAQCSHATLGLYKKVLYRAPKALNRWEMCAQPKVVLKIESEE 127
KMV+V+RNDL MGKGK+ AQ HA + + + P+A++ W Q KVV+K+ SE+
Sbjct: 1 MKMVVVIRNDLGMGKGKMVAQGGHAIIEAFLDAKRKNPRAVDEWLREGQKKVVVKVNSEK 60
Query: 128 DMLVLQERAKSLKLPTHITIDAGRTQIAPNSRTVMAILGPV--EVVDDVTGGLKLL 181
+++ + +A+S LP I DAG TQ+ P + T +AI GP E +D +TG LKLL
Sbjct: 61 ELIDIYNKARSEGLPCSIIRDAGHTQLEPGTLTAVAI-GPEKDEKIDKITGHLKLL 115
>sp|Q9V108|PTH_PYRAB Peptidyl-tRNA hydrolase OS=Pyrococcus abyssi (strain GE5 / Orsay)
GN=pth PE=3 SV=2
Length = 118
Score = 93.2 bits (230), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 51/115 (44%), Positives = 71/115 (61%), Gaps = 1/115 (0%)
Query: 68 FKMVLVVRNDLKMGKGKIAAQCSHATLGLYKKVLYRAPKALNRWEMCAQPKVVLKIESEE 127
FK V+VVR DLK+ KGK+A Q +H + K + +W Q KVV+K+ES +
Sbjct: 4 FKQVIVVRKDLKLSKGKLAVQVAHGAVTAAFKAYKEKREWFEKWFHEGQKKVVVKVESLD 63
Query: 128 DMLVLQERAKSLKLPTHITIDAGRTQIAPNSRTVMAI-LGPVEVVDDVTGGLKLL 181
++ L+ A+ L LPT + DAG T+I P + TV+AI GP E++D VTG LKLL
Sbjct: 64 ELFKLKAEAEKLNLPTALIQDAGLTEIPPGTITVLAIGPGPSEIIDKVTGHLKLL 118
>sp|A8MBW8|PTH_CALMQ Peptidyl-tRNA hydrolase OS=Caldivirga maquilingensis (strain ATCC
700844 / DSMZ 13496 / JCM 10307 / IC-167) GN=pth PE=3
SV=1
Length = 120
Score = 92.8 bits (229), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/118 (42%), Positives = 75/118 (63%), Gaps = 1/118 (0%)
Query: 65 LDDFKMVLVVRNDLKMGKGKIAAQCSHATLGLYKKVLYRAPKALNRWEMCAQPKVVLKIE 124
+ +FK +VVR DL+M +GK+A Q +HA + + L +N W Q K+VL ++
Sbjct: 1 MSEFKQSIVVRGDLRMSRGKLAVQVAHAAVSAVLEALRNRGDWVNAWVSGGQKKIVLVVD 60
Query: 125 SEEDMLVLQERAKSLKLPTHITIDAGRTQIAPNSRTVMAI-LGPVEVVDDVTGGLKLL 181
S ED++ L+ +A+SL LPT + DAG T++ P + T +AI GP E+V+ VTG LKLL
Sbjct: 61 SVEDLIRLKAKAESLGLPTALIEDAGLTELPPGTVTALAIGPGPEELVNKVTGSLKLL 118
>sp|C3N851|PTH_SULIY Peptidyl-tRNA hydrolase OS=Sulfolobus islandicus (strain Y.G.57.14
/ Yellowstone #1) GN=pth PE=3 SV=1
Length = 120
Score = 91.7 bits (226), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 49/119 (41%), Positives = 77/119 (64%), Gaps = 5/119 (4%)
Query: 68 FKMVLVVRNDLKMGKGKIAAQCSHATLGLYKKVL----YRAPKALNRWEMCAQPKVVLKI 123
KMV+VVR+D+KMGKGK+AAQ +HA + L ++ R + LN W QPK+V+K
Sbjct: 2 VKMVIVVRSDIKMGKGKMAAQVAHAAVTLVISIINSNNSRWKEWLNEWLQQGQPKIVVKA 61
Query: 124 ESEEDMLVLQERAKSLKLPTHITIDAGRTQIAPNSRTVMAI-LGPVEVVDDVTGGLKLL 181
S +++++ ++A+++ LP I DAG+TQ+ P + T + I P ++D +TG LKLL
Sbjct: 62 NSLDEIILRSKKAETMNLPFSIIEDAGKTQLEPGTITCLGIGPAPENLIDPITGDLKLL 120
>sp|C3NF60|PTH_SULIN Peptidyl-tRNA hydrolase OS=Sulfolobus islandicus (strain Y.N.15.51
/ Yellowstone #2) GN=pth PE=3 SV=1
Length = 120
Score = 91.7 bits (226), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 49/119 (41%), Positives = 77/119 (64%), Gaps = 5/119 (4%)
Query: 68 FKMVLVVRNDLKMGKGKIAAQCSHATLGLYKKVL----YRAPKALNRWEMCAQPKVVLKI 123
KMV+VVR+D+KMGKGK+AAQ +HA + L ++ R + LN W QPK+V+K
Sbjct: 2 VKMVIVVRSDIKMGKGKMAAQVAHAAVTLVISIINSNNSRWKEWLNEWLQQGQPKIVVKA 61
Query: 124 ESEEDMLVLQERAKSLKLPTHITIDAGRTQIAPNSRTVMAI-LGPVEVVDDVTGGLKLL 181
S +++++ ++A+++ LP I DAG+TQ+ P + T + I P ++D +TG LKLL
Sbjct: 62 NSLDEIILRSKKAETMNLPFSIIEDAGKTQLEPGTITCLGIGPAPENLIDPITGDLKLL 120
>sp|C3MYS2|PTH_SULIM Peptidyl-tRNA hydrolase OS=Sulfolobus islandicus (strain M.14.25 /
Kamchatka #1) GN=pth PE=3 SV=1
Length = 120
Score = 91.7 bits (226), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 49/119 (41%), Positives = 77/119 (64%), Gaps = 5/119 (4%)
Query: 68 FKMVLVVRNDLKMGKGKIAAQCSHATLGLYKKVL----YRAPKALNRWEMCAQPKVVLKI 123
KMV+VVR+D+KMGKGK+AAQ +HA + L ++ R + LN W QPK+V+K
Sbjct: 2 VKMVIVVRSDIKMGKGKMAAQVAHAAVTLVISIINSNNSRWKEWLNEWLQQGQPKIVVKA 61
Query: 124 ESEEDMLVLQERAKSLKLPTHITIDAGRTQIAPNSRTVMAI-LGPVEVVDDVTGGLKLL 181
S +++++ ++A+++ LP I DAG+TQ+ P + T + I P ++D +TG LKLL
Sbjct: 62 NSLDEIILRSKKAETMNLPFSIIEDAGKTQLEPGTITCLGIGPAPENLIDPITGDLKLL 120
>sp|C3MJ30|PTH_SULIL Peptidyl-tRNA hydrolase OS=Sulfolobus islandicus (strain L.S.2.15 /
Lassen #1) GN=pth PE=3 SV=1
Length = 120
Score = 91.7 bits (226), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 49/119 (41%), Positives = 77/119 (64%), Gaps = 5/119 (4%)
Query: 68 FKMVLVVRNDLKMGKGKIAAQCSHATLGLYKKVL----YRAPKALNRWEMCAQPKVVLKI 123
KMV+VVR+D+KMGKGK+AAQ +HA + L ++ R + LN W QPK+V+K
Sbjct: 2 VKMVIVVRSDIKMGKGKMAAQVAHAAVTLVISIINSNNSRWKEWLNEWLQQGQPKIVVKA 61
Query: 124 ESEEDMLVLQERAKSLKLPTHITIDAGRTQIAPNSRTVMAI-LGPVEVVDDVTGGLKLL 181
S +++++ ++A+++ LP I DAG+TQ+ P + T + I P ++D +TG LKLL
Sbjct: 62 NSLDEIILRSKKAETMNLPFSIIEDAGKTQLEPGTITCLGIGPAPENLIDPITGDLKLL 120
>sp|C4KJ09|PTH_SULIK Peptidyl-tRNA hydrolase OS=Sulfolobus islandicus (strain M.16.4 /
Kamchatka #3) GN=pth PE=3 SV=1
Length = 120
Score = 91.7 bits (226), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 49/119 (41%), Positives = 77/119 (64%), Gaps = 5/119 (4%)
Query: 68 FKMVLVVRNDLKMGKGKIAAQCSHATLGLYKKVL----YRAPKALNRWEMCAQPKVVLKI 123
KMV+VVR+D+KMGKGK+AAQ +HA + L ++ R + LN W QPK+V+K
Sbjct: 2 VKMVIVVRSDIKMGKGKMAAQVAHAAVTLVISIINSNNSRWKEWLNEWLQQGQPKIVVKA 61
Query: 124 ESEEDMLVLQERAKSLKLPTHITIDAGRTQIAPNSRTVMAI-LGPVEVVDDVTGGLKLL 181
S +++++ ++A+++ LP I DAG+TQ+ P + T + I P ++D +TG LKLL
Sbjct: 62 NSLDEIILRSKKAETMNLPFSIIEDAGKTQLEPGTITCLGIGPAPENLIDPITGDLKLL 120
>sp|C3MZS7|PTH_SULIA Peptidyl-tRNA hydrolase OS=Sulfolobus islandicus (strain M.16.27)
GN=pth PE=3 SV=1
Length = 120
Score = 91.7 bits (226), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 49/119 (41%), Positives = 77/119 (64%), Gaps = 5/119 (4%)
Query: 68 FKMVLVVRNDLKMGKGKIAAQCSHATLGLYKKVL----YRAPKALNRWEMCAQPKVVLKI 123
KMV+VVR+D+KMGKGK+AAQ +HA + L ++ R + LN W QPK+V+K
Sbjct: 2 VKMVIVVRSDIKMGKGKMAAQVAHAAVTLVISIINSNNSRWKEWLNEWLQQGQPKIVVKA 61
Query: 124 ESEEDMLVLQERAKSLKLPTHITIDAGRTQIAPNSRTVMAI-LGPVEVVDDVTGGLKLL 181
S +++++ ++A+++ LP I DAG+TQ+ P + T + I P ++D +TG LKLL
Sbjct: 62 NSLDEIILRSKKAETMNLPFSIIEDAGKTQLEPGTITCLGIGPAPENLIDPITGDLKLL 120
>sp|P61414|PTH_HALSA Peptidyl-tRNA hydrolase OS=Halobacterium salinarum (strain ATCC
700922 / JCM 11081 / NRC-1) GN=pth PE=3 SV=1
Length = 112
Score = 90.5 bits (223), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 49/115 (42%), Positives = 68/115 (59%), Gaps = 4/115 (3%)
Query: 68 FKMVLVVRNDLKMGKGKIAAQCSHATLGLYKKVLYRAPKALNRWEMCAQPKVVLKIESEE 127
K V+ R D+ MG+GK+AAQ +HA+L Y+ Y +A+ RW+ Q KVV+K+ SE
Sbjct: 1 MKQVIAARTDIGMGQGKLAAQVAHASLNAYE---YTDDRAVRRWKDEGQTKVVVKVGSER 57
Query: 128 DMLVLQERAKSLKLPTHITIDAGRTQIAPNSRTVMAI-LGPVEVVDDVTGGLKLL 181
++ E AK LPT + DAGRTQ+ P + T +AI P VD +TG L L
Sbjct: 58 ELYERSEEAKRAGLPTGLISDAGRTQLEPGTPTALAIGPAPDADVDQITGDLSLF 112
>sp|B0R2Y5|PTH_HALS3 Peptidyl-tRNA hydrolase OS=Halobacterium salinarum (strain ATCC
29341 / DSM 671 / R1) GN=pth PE=3 SV=1
Length = 112
Score = 90.5 bits (223), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 49/115 (42%), Positives = 68/115 (59%), Gaps = 4/115 (3%)
Query: 68 FKMVLVVRNDLKMGKGKIAAQCSHATLGLYKKVLYRAPKALNRWEMCAQPKVVLKIESEE 127
K V+ R D+ MG+GK+AAQ +HA+L Y+ Y +A+ RW+ Q KVV+K+ SE
Sbjct: 1 MKQVIAARTDIGMGQGKLAAQVAHASLNAYE---YTDDRAVRRWKDEGQTKVVVKVGSER 57
Query: 128 DMLVLQERAKSLKLPTHITIDAGRTQIAPNSRTVMAI-LGPVEVVDDVTGGLKLL 181
++ E AK LPT + DAGRTQ+ P + T +AI P VD +TG L L
Sbjct: 58 ELYERSEEAKRAGLPTGLISDAGRTQLEPGTPTALAIGPAPDADVDQITGDLSLF 112
>sp|Q5JDB8|PTH_PYRKO Peptidyl-tRNA hydrolase OS=Pyrococcus kodakaraensis (strain ATCC
BAA-918 / JCM 12380 / KOD1) GN=pth PE=3 SV=1
Length = 118
Score = 90.5 bits (223), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 52/115 (45%), Positives = 68/115 (59%), Gaps = 1/115 (0%)
Query: 68 FKMVLVVRNDLKMGKGKIAAQCSHATLGLYKKVLYRAPKALNRWEMCAQPKVVLKIESEE 127
+K V+V R DLK+ KGK A Q +H + K P+ W Q KVV+K E+ E
Sbjct: 4 YKQVIVARKDLKLSKGKFAVQVAHGAVTAAIKAQKEKPEWFKAWFHEGQKKVVVKAENLE 63
Query: 128 DMLVLQERAKSLKLPTHITIDAGRTQIAPNSRTVMAI-LGPVEVVDDVTGGLKLL 181
++ L+ A+ L LPT + DAG T+I P + TV+AI GP EVVD VTG LKLL
Sbjct: 64 ELFKLKAEAEKLGLPTALIKDAGLTEIPPGTVTVLAIGPGPEEVVDKVTGHLKLL 118
>sp|Q877G5|PTH_SULAC Peptidyl-tRNA hydrolase OS=Sulfolobus acidocaldarius (strain ATCC
33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770)
GN=pth PE=3 SV=1
Length = 120
Score = 89.7 bits (221), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/120 (43%), Positives = 74/120 (61%), Gaps = 6/120 (5%)
Query: 68 FKMVLVVRNDLKMGKGKIAAQCSHATLGLYKKVLYRAPKA-----LNRWEMCAQPKVVLK 122
KM ++VR DL MGKGKIAAQ +HA + L +++ + KA L W QPK+VLK
Sbjct: 1 MKMAVLVRTDLDMGKGKIAAQVAHAAVSLVLEIVQKRSKAEWKEWLEMWINQGQPKIVLK 60
Query: 123 IESEEDMLVLQERAKSLKLPTHITIDAGRTQIAPNSRTVMAI-LGPVEVVDDVTGGLKLL 181
+++ +++L +A LP I DAG+TQI P + T I GP E++D++TG LKLL
Sbjct: 61 VKNLDELLEKYNKALQSGLPATIIQDAGKTQIEPGTITCAGIGPGPEEMIDNITGDLKLL 120
>sp|Q8U0N0|PTH_PYRFU Peptidyl-tRNA hydrolase OS=Pyrococcus furiosus (strain ATCC 43587 /
DSM 3638 / JCM 8422 / Vc1) GN=pth PE=3 SV=1
Length = 119
Score = 89.4 bits (220), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 50/115 (43%), Positives = 71/115 (61%), Gaps = 1/115 (0%)
Query: 68 FKMVLVVRNDLKMGKGKIAAQCSHATLGLYKKVLYRAPKALNRWEMCAQPKVVLKIESEE 127
+K V+V R+DLK+ KGK+A Q +H + + + + W Q KVV+K ++EE
Sbjct: 5 YKQVIVARSDLKLSKGKLAVQVAHGAVTAAFEAYKKKREWFEAWFREGQKKVVVKAQNEE 64
Query: 128 DMLVLQERAKSLKLPTHITIDAGRTQIAPNSRTVMAI-LGPVEVVDDVTGGLKLL 181
++ L+ A+ L LPT + DAG T+I P + TV+AI GP EVVD VTG LKLL
Sbjct: 65 ELFKLKSEAEKLGLPTALIRDAGLTEIPPGTITVLAIGPGPEEVVDKVTGHLKLL 119
>sp|O13830|PTH2_SCHPO Probable peptidyl-tRNA hydrolase 2 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC19A8.14 PE=1 SV=1
Length = 205
Score = 89.0 bits (219), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 59/114 (51%), Positives = 73/114 (64%), Gaps = 1/114 (0%)
Query: 69 KMVLVVRNDLKMGKGKIAAQCSHATLGLYKKVLYRAPKALNRWEMCAQPKVVLKIESEED 128
KMVLVVR DL M KGKIAAQC+HA L YK P + WE Q K+ L+ ++EE
Sbjct: 92 KMVLVVRTDLGMTKGKIAAQCAHAALACYKIASAVDPDLVRIWENAGQAKITLQAQTEET 151
Query: 129 MLVLQERAKSLKLPTHITIDAGRTQIAPNSRTVMAI-LGPVEVVDDVTGGLKLL 181
+ +LQ +A SL L + DAGRTQIA S TV+ I GPV V+++VTG LKL
Sbjct: 152 LELLQAQAMSLGLCARVIHDAGRTQIASGSATVLGIGPGPVSVINEVTGSLKLF 205
>sp|C6A1K8|PTH_THESM Peptidyl-tRNA hydrolase OS=Thermococcus sibiricus (strain MM 739 /
DSM 12597) GN=pth PE=3 SV=1
Length = 118
Score = 87.0 bits (214), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 69/115 (60%), Gaps = 1/115 (0%)
Query: 68 FKMVLVVRNDLKMGKGKIAAQCSHATLGLYKKVLYRAPKALNRWEMCAQPKVVLKIESEE 127
+K V++VR+DLK+ KGK+A Q +H + K P+ W Q KVV+K ESE
Sbjct: 4 YKQVMIVRSDLKLSKGKLAVQVAHGAVTAAFKAYKEKPEWFKGWFNEGQKKVVVKAESER 63
Query: 128 DMLVLQERAKSLKLPTHITIDAGRTQIAPNSRTVMAI-LGPVEVVDDVTGGLKLL 181
++ L+ A+ L +P + DAG T+I P + T +AI GP E+V+ +TG LKL+
Sbjct: 64 ELFELKAEAEKLGIPNSLIRDAGLTEIPPGTITCLAIGPGPEEIVNKITGNLKLV 118
>sp|B6YTE3|PTH_THEON Peptidyl-tRNA hydrolase OS=Thermococcus onnurineus (strain NA1)
GN=pth PE=3 SV=1
Length = 118
Score = 85.5 bits (210), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/115 (40%), Positives = 69/115 (60%), Gaps = 1/115 (0%)
Query: 68 FKMVLVVRNDLKMGKGKIAAQCSHATLGLYKKVLYRAPKALNRWEMCAQPKVVLKIESEE 127
+K V+V+R DLK+ KGK+A Q +H + KV P+ W Q KVV+K E+E
Sbjct: 4 YKQVMVIRKDLKLSKGKMAVQVAHGAVTAALKVQKEKPEWFKAWFHEGQKKVVVKAENER 63
Query: 128 DMLVLQERAKSLKLPTHITIDAGRTQIAPNSRTVMAI-LGPVEVVDDVTGGLKLL 181
++ L+ A+ L +PT + DAG T+I P + T +A+ P E+VD VTG LKL+
Sbjct: 64 ELFELKAHAEKLGIPTALIRDAGLTEIPPGTITCLAVGPAPEELVDKVTGHLKLV 118
>sp|P34222|PTH2_YEAST Peptidyl-tRNA hydrolase 2 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=PTH2 PE=1 SV=2
Length = 208
Score = 84.7 bits (208), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/128 (42%), Positives = 69/128 (53%), Gaps = 9/128 (7%)
Query: 61 LADILDDFKMVLVVRNDLKMGKGKIAAQCSHATLGLYKKVLYRAPKA------LNRWEMC 114
L DI + +M LV+R DL M KGKIAAQC HA L ++ + +A RW
Sbjct: 81 LNDIPGEVRMALVIRQDLGMTKGKIAAQCCHAALSCFRHIATNPARASYNPIMTQRWLNA 140
Query: 115 AQPKVVLKIESEEDMLVLQERAKSLKLPTHITIDAGRTQIAPNSRTVMAILGPV--EVVD 172
Q K+ LK + M L +A SL + + DAGRTQIA S TV+ LGP V+D
Sbjct: 141 GQAKITLKCPDKFTMDELYAKAISLGVNAAVIHDAGRTQIAAGSATVLG-LGPAPKAVLD 199
Query: 173 DVTGGLKL 180
+TG LKL
Sbjct: 200 QITGDLKL 207
>sp|A3DMF7|PTH_STAMF Peptidyl-tRNA hydrolase OS=Staphylothermus marinus (strain ATCC
43588 / DSM 3639 / F1) GN=pth PE=3 SV=1
Length = 121
Score = 84.0 bits (206), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 46/116 (39%), Positives = 67/116 (57%), Gaps = 1/116 (0%)
Query: 67 DFKMVLVVRNDLKMGKGKIAAQCSHATLGLYKKVLYRAPKALNRWEMCAQPKVVLKIESE 126
++K V++VR D+KM KGK+A Q +HA + + + + W Q K+V+K SE
Sbjct: 6 EYKQVIIVRTDIKMSKGKLAVQVAHAAVSAAFEAYKKKREWFLEWWATGQKKIVVKGGSE 65
Query: 127 EDMLVLQERAKSLKLPTHITIDAGRTQIAPNSRTVMAI-LGPVEVVDDVTGGLKLL 181
D+L E AK LP I DAG T++ PN+ T + I GP +D++TG LKLL
Sbjct: 66 RDLLKYAEMAKKKDLPVAIIRDAGLTELPPNTLTAVGIGPGPSRKIDEITGDLKLL 121
>sp|Q12WH8|PTH_METBU Peptidyl-tRNA hydrolase OS=Methanococcoides burtonii (strain DSM
6242) GN=pth PE=3 SV=1
Length = 115
Score = 83.2 bits (204), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 73/117 (62%), Gaps = 6/117 (5%)
Query: 67 DFKMVLVVRNDLKMGKGKIAAQCSHATLGLYKKVLYRAPKALNRWEMCAQPKVVLKIESE 126
++K +++R+DLK+ KGK+A Q +HA + + + + L W+ Q KVVL++E
Sbjct: 3 EYKQCIIIRDDLKLSKGKLAVQVAHAAVSAAE---WASRSDLENWKEGGQKKVVLRVEKL 59
Query: 127 EDMLVLQERAKSLKLPTHITIDAGRTQIAPNSRTVMAILGP--VEVVDDVTGGLKLL 181
+D+ L+E+A+ L T + DAG T+IAP + TV+ I GP + +D VTG LKL+
Sbjct: 60 QDLFELKEKARREGLSTALITDAGLTEIAPGTVTVLGI-GPARADYIDKVTGNLKLV 115
>sp|A9A6B6|PTH_METM6 Peptidyl-tRNA hydrolase OS=Methanococcus maripaludis (strain C6 /
ATCC BAA-1332) GN=pth PE=3 SV=1
Length = 116
Score = 82.8 bits (203), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/116 (43%), Positives = 69/116 (59%), Gaps = 3/116 (2%)
Query: 68 FKMVLVVRNDLKMGKGKIAAQCSHATLGLYKKVLYRAPKALNRWEMCAQPKVVLKIESEE 127
++ +V+RNDLKMGKGK+AAQ HA+L + + A++ W Q KVVLK+ SE+
Sbjct: 2 YEQAIVIRNDLKMGKGKMAAQACHASLQAFLHAQKISSSAVSGWMNEGQKKVVLKVNSEK 61
Query: 128 DMLVLQERAKSLKLPTHITIDAGRTQIAPNSRTVMAILGP--VEVVDDVTGGLKLL 181
++L + + LP + DAGRTQI P S T + I GP E + VT LKLL
Sbjct: 62 ELLEIFKNVNIEGLPCSLIRDAGRTQIEPGSLTAVGI-GPEKEEKISKVTKDLKLL 116
>sp|Q5V1D3|PTH_HALMA Peptidyl-tRNA hydrolase OS=Haloarcula marismortui (strain ATCC
43049 / DSM 3752 / JCM 8966 / VKM B-1809) GN=pth PE=3
SV=2
Length = 112
Score = 82.8 bits (203), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 66/116 (56%), Gaps = 6/116 (5%)
Query: 68 FKMVLVVRNDLKMGKGKIAAQCSHATLGLYKKVLYRAPKALNRWEMCAQPKVVLKIESEE 127
K +V R D+ MG+GK+AAQ +HA+L Y+ PK W+ Q KVVLK SE
Sbjct: 1 MKQAIVARADIGMGEGKLAAQVAHASLSAYEDA---GPKPRKAWKGAGQKKVVLKATSES 57
Query: 128 DMLVLQERAKSLKLPTHITIDAGRTQIAPNSRTVMAILGPV--EVVDDVTGGLKLL 181
++ L + A+ LP + DAG TQ+ P + T +A+ GP E+VD VTG L L
Sbjct: 58 ELFELADVAEREGLPHAVVRDAGHTQLDPGTVTALAV-GPAEDELVDRVTGDLPLF 112
>sp|A4FYL9|PTH_METM5 Peptidyl-tRNA hydrolase OS=Methanococcus maripaludis (strain C5 /
ATCC BAA-1333) GN=pth PE=3 SV=1
Length = 116
Score = 82.0 bits (201), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/116 (42%), Positives = 69/116 (59%), Gaps = 3/116 (2%)
Query: 68 FKMVLVVRNDLKMGKGKIAAQCSHATLGLYKKVLYRAPKALNRWEMCAQPKVVLKIESEE 127
++ +V+RNDLKMGKGK+AAQ HA++ + + A++ W Q KVVLK+ SE+
Sbjct: 2 YEQAIVIRNDLKMGKGKMAAQACHASIQAFLHAQKISSSAVSGWMNEGQKKVVLKVNSEK 61
Query: 128 DMLVLQERAKSLKLPTHITIDAGRTQIAPNSRTVMAILGP--VEVVDDVTGGLKLL 181
++L + + LP + DAGRTQI P S T + I GP E + VT LKLL
Sbjct: 62 ELLEIFKNVNIEGLPCSLIRDAGRTQIEPGSLTAVGI-GPEKEEKISKVTKDLKLL 116
>sp|A6USA3|PTH_METVS Peptidyl-tRNA hydrolase OS=Methanococcus vannielii (strain SB /
ATCC 35089 / DSM 1224) GN=pth PE=3 SV=1
Length = 116
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/116 (42%), Positives = 68/116 (58%), Gaps = 3/116 (2%)
Query: 68 FKMVLVVRNDLKMGKGKIAAQCSHATLGLYKKVLYRAPKALNRWEMCAQPKVVLKIESEE 127
++ +V+RNDLKMGKGK+AAQ HA++ Y +P A+ W Q KVVLK+ SE+
Sbjct: 2 YEQAIVIRNDLKMGKGKMAAQACHASIQAYLHAQKISPSAVMYWMNEGQKKVVLKVNSEK 61
Query: 128 DMLVLQERAKSLKLPTHITIDAGRTQIAPNSRTVMAILGP--VEVVDDVTGGLKLL 181
++L + LP + DAG+TQI P S T + I GP + + VT LKLL
Sbjct: 62 ELLEIFRDVNIDGLPCSLIRDAGKTQIEPGSLTAVGI-GPEKEDKISKVTKNLKLL 116
>sp|A6VJR3|PTH_METM7 Peptidyl-tRNA hydrolase OS=Methanococcus maripaludis (strain C7 /
ATCC BAA-1331) GN=pth PE=3 SV=1
Length = 116
Score = 81.6 bits (200), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 69/116 (59%), Gaps = 3/116 (2%)
Query: 68 FKMVLVVRNDLKMGKGKIAAQCSHATLGLYKKVLYRAPKALNRWEMCAQPKVVLKIESEE 127
++ +V+RNDLKMGKGK+AAQ HA++ + + A++ W Q KVVLK+ SE+
Sbjct: 2 YEQAIVIRNDLKMGKGKMAAQACHASIQAFLHAQKISSSAVSGWMNEGQKKVVLKVNSEK 61
Query: 128 DMLVLQERAKSLKLPTHITIDAGRTQIAPNSRTVMAILGP--VEVVDDVTGGLKLL 181
++L + + LP + DAGRTQ+ P S T + I GP E + VT LKLL
Sbjct: 62 ELLEIFKNVNIEGLPCSLIRDAGRTQVEPGSLTAVGI-GPEKEEKISKVTKDLKLL 116
>sp|B9LTP1|PTH_HALLT Peptidyl-tRNA hydrolase OS=Halorubrum lacusprofundi (strain ATCC
49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=pth PE=3 SV=1
Length = 112
Score = 81.3 bits (199), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/115 (40%), Positives = 66/115 (57%), Gaps = 6/115 (5%)
Query: 68 FKMVLVVRNDLKMGKGKIAAQCSHATLGLYKKVLYRAPKALNRWEMCAQPKVVLKIESEE 127
K +V R D+ MG+GK+AAQ +HA+L Y+ R K +W+ Q KVVLK +SE
Sbjct: 1 MKQAIVARTDIGMGEGKLAAQVAHASLSAYQDAGRRVRK---KWQGEGQKKVVLKGDSES 57
Query: 128 DMLVLQERAKSLKLPTHITIDAGRTQIAPNSRTVMAILGPV--EVVDDVTGGLKL 180
+ L ++A +P I DAG TQ+ P + T +A+ GP + VD VTG L L
Sbjct: 58 QLFELADKADKEGIPYAIIRDAGHTQLEPGTVTALAV-GPARDDTVDRVTGDLSL 111
>sp|O27732|PTH_METTH Peptidyl-tRNA hydrolase OS=Methanothermobacter thermautotrophicus
(strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330
/ Delta H) GN=pth PE=3 SV=1
Length = 112
Score = 80.5 bits (197), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 69/116 (59%), Gaps = 6/116 (5%)
Query: 68 FKMVLVVRNDLKMGKGKIAAQCSHATLGLYKKVLYRAPKALNRWEMCAQPKVVLKIESEE 127
K V++VR+DLKMGKGKIAAQ HA++G +K+ + +WE+ KV++ + S +
Sbjct: 1 MKQVIIVRSDLKMGKGKIAAQACHASIGSFKRT---EEDKIRKWELEGSKKVIVSVNSLD 57
Query: 128 DMLVLQERAKSLKLPTHITIDAGRTQIAPNSRTVMAILGP--VEVVDDVTGGLKLL 181
++L + K + ++ DAG TQI + T + I GP E +D +TG LKLL
Sbjct: 58 ELLEIYRAVKEAGISNYLVRDAGHTQIPAGTITCLGI-GPDDDEKIDKITGDLKLL 112
>sp|P61234|PTH_METMP Peptidyl-tRNA hydrolase OS=Methanococcus maripaludis (strain S2 /
LL) GN=pth PE=3 SV=1
Length = 116
Score = 79.7 bits (195), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 68/116 (58%), Gaps = 3/116 (2%)
Query: 68 FKMVLVVRNDLKMGKGKIAAQCSHATLGLYKKVLYRAPKALNRWEMCAQPKVVLKIESEE 127
++ +V+RNDLKMGKGK+AAQ HA++ + + A++ W Q KVVLK+ SE+
Sbjct: 2 YEQAIVIRNDLKMGKGKMAAQACHASIQAFLHAQKISSSAVSGWMNEGQKKVVLKVNSEK 61
Query: 128 DMLVLQERAKSLKLPTHITIDAGRTQIAPNSRTVMAILGP--VEVVDDVTGGLKLL 181
++L + + LP + DAGRTQI P S T + I GP E + V LKLL
Sbjct: 62 ELLEIFKNVNIEGLPCSLIRDAGRTQIEPGSLTAVGI-GPEKEEKISKVKKDLKLL 116
>sp|Q8Q0M4|PTH_METMA Peptidyl-tRNA hydrolase OS=Methanosarcina mazei (strain ATCC
BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)
GN=pth PE=3 SV=2
Length = 115
Score = 79.7 bits (195), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 73/119 (61%), Gaps = 6/119 (5%)
Query: 65 LDDFKMVLVVRNDLKMGKGKIAAQCSHATLGLYKKVLYRAPKALNRWEMCAQPKVVLKIE 124
+ ++K +V R+DLK+ KGK A Q +HA L + + + L +W+ Q K+VLK+
Sbjct: 1 MSEYKQCIVTRDDLKLSKGKFAVQVAHAALSAAE---WASKGDLEKWKEGGQKKIVLKVP 57
Query: 125 SEEDMLVLQERAKSLKLPTHITIDAGRTQIAPNSRTVMAILGPV--EVVDDVTGGLKLL 181
S +++ L+E+A+ LPT + DAG T+I P + TV+ I GP E++D +T LKL+
Sbjct: 58 SIKELYELKEKARREGLPTALIQDAGLTEIPPGTVTVLGI-GPAKEELIDKITKDLKLV 115
>sp|Q466V4|PTH_METBF Peptidyl-tRNA hydrolase OS=Methanosarcina barkeri (strain Fusaro /
DSM 804) GN=pth PE=3 SV=1
Length = 115
Score = 79.7 bits (195), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 71/119 (59%), Gaps = 6/119 (5%)
Query: 65 LDDFKMVLVVRNDLKMGKGKIAAQCSHATLGLYKKVLYRAPKALNRWEMCAQPKVVLKIE 124
+ ++K +V R DLK+ KGK A Q +HA + + + + L +W+ Q K+VLK+
Sbjct: 1 MSEYKQCIVTREDLKLSKGKFAVQVAHAAISASE---WASKNDLEKWKEGGQKKIVLKVP 57
Query: 125 SEEDMLVLQERAKSLKLPTHITIDAGRTQIAPNSRTVMAILGPV--EVVDDVTGGLKLL 181
+ D+ L+E+A+ LPT + DAG T+I P + TV+ I GP E++D VT LKL+
Sbjct: 58 TLNDLYELKEKARREGLPTALIQDAGLTEIPPGTVTVLGI-GPAKEELIDKVTRNLKLV 115
>sp|Q18KN8|PTH_HALWD Peptidyl-tRNA hydrolase OS=Haloquadratum walsbyi (strain DSM 16790)
GN=pth PE=3 SV=1
Length = 112
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 67/115 (58%), Gaps = 6/115 (5%)
Query: 68 FKMVLVVRNDLKMGKGKIAAQCSHATLGLYKKVLYRAPKALNRWEMCAQPKVVLKIESEE 127
K +V R DL+MGKGK+AAQ +HA+L + R+ K +W+ Q K+VLK SE+
Sbjct: 1 MKQAIVARADLRMGKGKLAAQVAHASLSAVEDTGTRSEK---QWKGGGQKKIVLKANSEK 57
Query: 128 DMLVLQERAKSLKLPTHITIDAGRTQIAPNSRTVMAILGP--VEVVDDVTGGLKL 180
+ L + A+ +P + DAG TQ+ P + T +AI GP E +D +TG L L
Sbjct: 58 KLFQLADEAERDGIPHAVVRDAGHTQLEPGTVTCIAI-GPDSDENIDRITGSLSL 111
>sp|Q8TKX4|PTH_METAC Peptidyl-tRNA hydrolase OS=Methanosarcina acetivorans (strain ATCC
35395 / DSM 2834 / JCM 12185 / C2A) GN=pth PE=3 SV=1
Length = 115
Score = 77.8 bits (190), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 72/119 (60%), Gaps = 6/119 (5%)
Query: 65 LDDFKMVLVVRNDLKMGKGKIAAQCSHATLGLYKKVLYRAPKALNRWEMCAQPKVVLKIE 124
+ ++K +V R+DLK+ KGK A Q +HA L + + + L +W+ Q K+VL++
Sbjct: 1 MSEYKQCIVTRDDLKLSKGKFAVQVAHAALSAAE---WASKSDLEKWKEGGQKKIVLRVP 57
Query: 125 SEEDMLVLQERAKSLKLPTHITIDAGRTQIAPNSRTVMAILGPV--EVVDDVTGGLKLL 181
+ +D+ L+E+A+ LPT + DAG T+I + TV+ I GP EV+D VT LKL+
Sbjct: 58 TIKDLYELKEKARREGLPTALIQDAGLTEIPAGTVTVLGI-GPAKEEVIDKVTRDLKLV 115
>sp|Q97CB4|PTH_THEVO Peptidyl-tRNA hydrolase OS=Thermoplasma volcanium (strain ATCC
51530 / DSM 4299 / JCM 9571 / NBRC 15438 / GSS1) GN=pth
PE=3 SV=1
Length = 117
Score = 77.4 bits (189), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 44/115 (38%), Positives = 70/115 (60%), Gaps = 3/115 (2%)
Query: 69 KMVLVVRNDLKMGKGKIAAQCSHATLGLYKKVLYRAPKALNRWEMCAQPKVVLKIESEED 128
K+V+ VR DL MGKGKIAAQ +HA + K + K + W Q K+V+K+ + ++
Sbjct: 4 KLVVAVRKDLDMGKGKIAAQVAHAAVSCAIKAMKEKKKIFDEWMDEGQKKIVVKVPNVDE 63
Query: 129 MLVLQERAKSLKLPTHITIDAGRTQIAPNSRTVMAILGP-VEV-VDDVTGGLKLL 181
+ +++++A S+ + + D G TQ+ P + T + LGP EV +DD+TG KLL
Sbjct: 64 IYIIKKKADSMGIINEVIQDRGYTQVEPGTVTCIG-LGPDYEVYLDDITGKYKLL 117
>sp|O28185|PTH_ARCFU Peptidyl-tRNA hydrolase OS=Archaeoglobus fulgidus (strain ATCC
49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=pth PE=1 SV=1
Length = 115
Score = 75.5 bits (184), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/117 (41%), Positives = 73/117 (62%), Gaps = 8/117 (6%)
Query: 68 FKMVLVVRNDLKMGKGKIAAQCSHATLGLYKKVLYRAPKALNR-WEMCAQPKVVLKIESE 126
K V+VVR+DLK+ +GK+A Q +HA + Y ++ +L R W Q KVVLK++S
Sbjct: 3 LKQVIVVRDDLKLSRGKLAVQVAHAAIIGY----LKSDSSLRRKWLDEGQKKVVLKVKSL 58
Query: 127 EDMLVLQERAKSLKLPTHITIDAGRTQIAPNSRTVMAILGPVEV--VDDVTGGLKLL 181
E++L ++ +A+SL L T + DAG T++ P + T + I GP E +D VTG L LL
Sbjct: 59 EELLGIKHKAESLGLVTGLVQDAGLTEVPPGTITAVVI-GPDEERKIDKVTGNLPLL 114
>sp|A6UWF5|PTH_META3 Peptidyl-tRNA hydrolase OS=Methanococcus aeolicus (strain Nankai-3
/ ATCC BAA-1280) GN=pth PE=3 SV=1
Length = 116
Score = 74.7 bits (182), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 46/116 (39%), Positives = 64/116 (55%), Gaps = 3/116 (2%)
Query: 68 FKMVLVVRNDLKMGKGKIAAQCSHATLGLYKKVLYRAPKALNRWEMCAQPKVVLKIESEE 127
+K V+++RNDLKMGKGK+ AQ SHA+L + P W Q KVVLK+ SE+
Sbjct: 2 YKQVIILRNDLKMGKGKLVAQGSHASLISFLNTQKNNPSVAKEWLNEGQKKVVLKVNSEK 61
Query: 128 DMLVLQERAKSLKLPTHITIDAGRTQIAPNSRTVMAILGP--VEVVDDVTGGLKLL 181
++ + A + DAG TQI + T + I GP E ++ +TG LKLL
Sbjct: 62 ELFEVFRDANIDGFSCCLIRDAGHTQIPSGTATAVGI-GPDKEEKLEKITGKLKLL 116
>sp|Q9HLW6|PTH_THEAC Peptidyl-tRNA hydrolase OS=Thermoplasma acidophilum (strain ATCC
25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165)
GN=pth PE=1 SV=1
Length = 117
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 64/115 (55%), Gaps = 3/115 (2%)
Query: 69 KMVLVVRNDLKMGKGKIAAQCSHATLGLYKKVLYRAPKALNRWEMCAQPKVVLKIESEED 128
KMV+ VR DL MGKGKIAAQ +HA + + + N W Q K+V+K+ ++
Sbjct: 4 KMVIAVRKDLDMGKGKIAAQVAHAAVTCAIRSMKINRDVFNEWYDEGQRKIVVKVNDLDE 63
Query: 129 MLVLQERAKSLKLPTHITIDAGRTQIAPNSRTVMAILGP--VEVVDDVTGGLKLL 181
++ ++ A S+ + I D G TQ+ P + T + LGP E +D +TG KLL
Sbjct: 64 IMEIKRMADSMGIVNEIVQDRGYTQVEPGTITCIG-LGPDEEEKLDKITGKYKLL 117
>sp|Q8ZYM4|PTH_PYRAE Peptidyl-tRNA hydrolase OS=Pyrobaculum aerophilum (strain ATCC
51768 / IM2 / DSM 7523 / JCM 9630 / NBRC 100827) GN=pth
PE=3 SV=1
Length = 120
Score = 71.6 bits (174), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/122 (40%), Positives = 67/122 (54%), Gaps = 13/122 (10%)
Query: 67 DFKMVLVVRNDLKMGKGKIA-------AQCSHATLGLYKKVLYRAPKALNRWEMCAQPKV 119
D KM + +R DLK+ GK A +C A +G K +R K L++W Q K+
Sbjct: 2 DVKMTIAIRGDLKISCGKAAAQAGHAAVECVLAAMGDAK---WR--KWLDQWLEEGQKKI 56
Query: 120 VLKIESEEDMLVLQERAKSLKLPTHITIDAGRTQIAPNSRTVMAI-LGPVEVVDDVTGGL 178
VL + + L ERAKSL LPT + IDAG T++ P + T + + P E+VD VTG L
Sbjct: 57 VLTADDAAHLYQLHERAKSLGLPTAVVIDAGLTELPPGTPTAICVGPAPDELVDKVTGSL 116
Query: 179 KL 180
KL
Sbjct: 117 KL 118
>sp|Q8TV04|PTH_METKA Peptidyl-tRNA hydrolase OS=Methanopyrus kandleri (strain AV19 / DSM
6324 / JCM 9639 / NBRC 100938) GN=pth PE=3 SV=1
Length = 116
Score = 70.9 bits (172), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 49/116 (42%), Positives = 71/116 (61%), Gaps = 4/116 (3%)
Query: 68 FKMVLVVRNDLKMGKGKIAAQCSHATLGLYKKVLYRAPKALNRWEMCAQPKVVLKIESEE 127
+K V+VVR DLK+ +GK+AAQ +HA+LG + + + + W Q KVVLK + +E
Sbjct: 2 YKQVIVVRGDLKLSRGKLAAQVAHASLGAFLRA-KESGAPVEEWLREGQKKVVLKCKDKE 60
Query: 128 DMLVLQERAKSLKLPTHITIDAGRTQIAPNSRTVMAILGP--VEVVDDVTGGLKLL 181
++L L E AK LP+ + DAG T++ P + T + I GP E +D VTG L LL
Sbjct: 61 ELLELHELAKRRGLPSFLVRDAGLTELEPGTVTCLGI-GPEREEEIDRVTGDLPLL 115
>sp|P61235|PTH_NANEQ Peptidyl-tRNA hydrolase OS=Nanoarchaeum equitans (strain Kin4-M)
GN=pth PE=3 SV=1
Length = 115
Score = 68.9 bits (167), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/114 (39%), Positives = 66/114 (57%), Gaps = 4/114 (3%)
Query: 69 KMVLVVRNDLKMGKGKIAAQCSHATLGLYKKVLYRAPKALNRWEMCAQPKVVLKIESEED 128
K V+V R L +GKGK+ AQ +HA+L KV + +RW KVVLK+ S E+
Sbjct: 3 KQVIVCRK-LDIGKGKLCAQVAHASLDAALKVYRNNKELFDRWYREGAKKVVLKVNSLEE 61
Query: 129 MLVLQERAKSLKLPTHITIDAGRTQIAPNSRTVMAILGP--VEVVDDVTGGLKL 180
+L + ++A + I DAG+TQ++P + +A LGP E +D +TG LKL
Sbjct: 62 LLDIAKKAMEKGIVVSIIRDAGKTQVSPGTIICIA-LGPDEDEKIDQITGNLKL 114
>sp|O74017|PTH_PYRHO Peptidyl-tRNA hydrolase OS=Pyrococcus horikoshii (strain ATCC
700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=pth PE=1 SV=1
Length = 121
Score = 68.9 bits (167), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/115 (42%), Positives = 70/115 (60%), Gaps = 1/115 (0%)
Query: 68 FKMVLVVRNDLKMGKGKIAAQCSHATLGLYKKVLYRAPKALNRWEMCAQPKVVLKIESEE 127
+K V+V R DLK+ KGK+AAQ +H + + + + W Q KVV+K+ESEE
Sbjct: 7 YKQVIVARADLKLSKGKLAAQVAHGAVTAAFEAYKKKREWFEAWFREGQKKVVVKVESEE 66
Query: 128 DMLVLQERAKSLKLPTHITIDAGRTQIAPNSRTVMAI-LGPVEVVDDVTGGLKLL 181
++ L+ A+ L LP + DAG T+I P + TV+A+ P E+VD VTG LKLL
Sbjct: 67 ELFKLKAEAEKLGLPNALIRDAGLTEIPPGTVTVLAVGPAPEEIVDKVTGNLKLL 121
>sp|Q9J5H2|V029_FOWPN Putative peptidyl-tRNA hydrolase OS=Fowlpox virus (strain NVSL)
GN=FPV029 PE=3 SV=1
Length = 124
Score = 67.0 bits (162), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 69/128 (53%), Gaps = 11/128 (8%)
Query: 61 LADILDD------FKMVLVVRNDLKMGKGKIAAQCSHATLGLYKKVLYRAPKALNRWEMC 114
+A++ D+ KMV V+R+DLKM KG+I +QC H + Y+K +P L RW
Sbjct: 1 MANVFDNSSYRDMLKMVFVIRDDLKMTKGEIVSQCCHGAISAYEKSKKYSPDYLKRWLKN 60
Query: 115 AQPKVVLKIESEEDMLVLQERAKSLKLPTHITIDAGRTQIAPNSRTVMAI-LGPVEVVDD 173
Q K +K+++E +M+ ++E A ++ + +I + R + TV+ I P + +
Sbjct: 61 GQVKETVKVDNENEMMDIRENATAIGVNYYIVQNDKRQK----CNTVLVIGPAPNYMFES 116
Query: 174 VTGGLKLL 181
+T LK L
Sbjct: 117 LTRSLKPL 124
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.136 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,020,619
Number of Sequences: 539616
Number of extensions: 2329891
Number of successful extensions: 6220
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 6112
Number of HSP's gapped (non-prelim): 56
length of query: 181
length of database: 191,569,459
effective HSP length: 110
effective length of query: 71
effective length of database: 132,211,699
effective search space: 9387030629
effective search space used: 9387030629
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)