Query 030232
Match_columns 181
No_of_seqs 164 out of 612
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 10:35:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030232.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030232hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3282 Uncharacterized conser 100.0 1.2E-52 2.7E-57 343.4 17.6 175 2-181 6-190 (190)
2 TIGR00283 arch_pth2 peptidyl-t 100.0 7.3E-48 1.6E-52 296.4 14.4 114 68-181 1-115 (115)
3 cd02430 PTH2 Peptidyl-tRNA hyd 100.0 3.2E-47 6.9E-52 292.8 14.6 114 68-181 1-115 (115)
4 PF01981 PTH2: Peptidyl-tRNA h 100.0 3.4E-47 7.4E-52 291.0 12.7 115 67-181 1-116 (116)
5 PRK04322 peptidyl-tRNA hydrola 100.0 6E-47 1.3E-51 290.5 14.0 112 70-181 1-113 (113)
6 cd02407 PTH2_family Peptidyl-t 100.0 1.9E-46 4.1E-51 288.4 14.4 114 68-181 1-115 (115)
7 COG1990 pth2 Peptidyl-tRNA hyd 100.0 1.7E-42 3.8E-47 267.5 10.7 117 65-181 3-122 (122)
8 cd02429 PTH2_like Peptidyl-tRN 100.0 3.7E-39 8.1E-44 248.5 13.1 108 68-181 1-116 (116)
9 KOG3305 Uncharacterized conser 99.8 5.9E-20 1.3E-24 138.2 4.4 110 66-181 2-119 (121)
10 PF09391 DUF2000: Protein of u 98.3 1.5E-06 3.2E-11 68.7 6.5 108 67-181 1-132 (133)
11 COG4954 Uncharacterized protei 93.4 0.15 3.3E-06 39.7 4.6 66 114-180 54-133 (135)
12 TIGR00179 murB UDP-N-acetyleno 62.3 12 0.00027 32.6 4.3 37 110-146 6-42 (284)
13 PRK14652 UDP-N-acetylenolpyruv 57.9 17 0.00037 32.2 4.4 39 108-146 27-65 (302)
14 PRK11677 hypothetical protein; 57.9 8 0.00017 30.7 2.2 26 5-30 2-27 (134)
15 PF12687 DUF3801: Protein of u 57.9 1.1E+02 0.0024 25.6 9.2 66 105-175 21-87 (204)
16 COG3959 Transketolase, N-termi 57.2 69 0.0015 28.0 7.8 43 106-148 196-239 (243)
17 COG0313 Predicted methyltransf 55.2 37 0.00081 30.2 6.1 70 104-174 42-122 (275)
18 PRK13906 murB UDP-N-acetylenol 50.6 23 0.00051 31.3 4.1 38 109-146 29-66 (307)
19 PRK12436 UDP-N-acetylenolpyruv 50.5 26 0.00056 31.0 4.4 37 110-146 30-66 (305)
20 PRK13905 murB UDP-N-acetylenol 49.3 25 0.00055 30.7 4.1 38 108-145 22-59 (298)
21 PRK14649 UDP-N-acetylenolpyruv 49.1 25 0.00055 30.9 4.1 39 108-146 12-50 (295)
22 PF01565 FAD_binding_4: FAD bi 47.3 30 0.00065 25.8 3.8 33 118-151 2-34 (139)
23 PRK00046 murB UDP-N-acetylenol 46.7 28 0.0006 31.5 4.0 39 108-146 12-50 (334)
24 COG0761 lytB 4-Hydroxy-3-methy 46.3 12 0.00025 33.6 1.5 60 118-179 216-282 (294)
25 PRK13903 murB UDP-N-acetylenol 46.0 33 0.00072 31.3 4.5 39 108-146 24-62 (363)
26 cd02193 PurL Formylglycinamide 45.9 43 0.00094 28.6 5.0 38 108-146 232-269 (272)
27 PF14026 DUF4242: Protein of u 44.4 22 0.00048 25.3 2.5 38 107-147 36-75 (77)
28 PRK14650 UDP-N-acetylenolpyruv 43.0 32 0.0007 30.7 3.8 39 108-146 24-62 (302)
29 cd05014 SIS_Kpsf KpsF-like pro 42.1 70 0.0015 23.3 5.0 39 127-165 61-99 (128)
30 cd08347 PcpA_C_like C-terminal 40.1 1.2E+02 0.0025 23.6 6.2 66 115-180 65-139 (157)
31 cd07241 Glo_EDI_BRP_like_3 Thi 38.5 57 0.0012 22.8 3.9 29 115-143 70-98 (125)
32 PF02426 MIase: Muconolactone 38.4 51 0.0011 24.5 3.7 74 70-148 1-78 (91)
33 PRK14648 UDP-N-acetylenolpyruv 37.9 44 0.00094 30.7 3.9 39 108-146 21-59 (354)
34 PF02401 LYTB: LytB protein; 37.9 16 0.00036 32.2 1.1 60 117-178 212-278 (281)
35 cd05008 SIS_GlmS_GlmD_1 SIS (S 37.5 69 0.0015 23.3 4.4 39 127-165 60-98 (126)
36 cd08362 BphC5-RrK37_N_like N-t 37.0 1.5E+02 0.0031 20.8 6.6 29 115-143 58-86 (120)
37 cd04906 ACT_ThrD-I_1 First of 36.9 64 0.0014 22.7 3.9 31 114-144 39-70 (85)
38 PTZ00222 60S ribosomal protein 36.9 39 0.00084 29.9 3.3 56 113-168 145-207 (263)
39 PF14715 FixP_N: N-terminal do 36.5 36 0.00079 22.7 2.4 20 5-24 22-41 (51)
40 PRK14653 UDP-N-acetylenolpyruv 36.0 41 0.00089 29.8 3.3 38 108-146 25-62 (297)
41 cd04885 ACT_ThrD-I Tandem C-te 35.4 65 0.0014 21.5 3.6 29 114-142 37-65 (68)
42 cd08346 PcpA_N_like N-terminal 34.4 66 0.0014 22.4 3.7 29 115-143 73-101 (126)
43 PF13607 Succ_CoA_lig: Succiny 34.0 68 0.0015 25.1 4.0 49 105-155 43-95 (138)
44 COG0812 MurB UDP-N-acetylmuram 33.0 42 0.00091 30.0 2.9 38 109-146 13-50 (291)
45 cd00861 ProRS_anticodon_short 33.0 1.2E+02 0.0026 20.8 4.8 49 112-164 28-76 (94)
46 COG5304 Uncharacterized protei 33.0 54 0.0012 24.6 3.0 28 116-144 51-78 (92)
47 cd07240 ED_TypeI_classII_N N-t 32.6 98 0.0021 21.4 4.3 30 115-144 57-86 (117)
48 PF15608 PELOTA_1: PELOTA RNA 32.0 99 0.0021 23.5 4.4 40 117-164 57-96 (100)
49 TIGR03127 RuMP_HxlB 6-phospho 31.1 97 0.0021 24.3 4.5 41 126-166 85-125 (179)
50 cd07255 Glo_EDI_BRP_like_12 Th 30.5 85 0.0018 22.2 3.8 29 115-143 64-92 (125)
51 TIGR00216 ispH_lytB (E)-4-hydr 30.4 39 0.00084 29.9 2.2 61 117-179 211-278 (280)
52 PRK14433 acylphosphatase; Prov 29.5 59 0.0013 23.5 2.7 40 132-178 20-59 (87)
53 cd06599 GH31_glycosidase_Aec37 29.4 96 0.0021 27.2 4.6 52 125-176 27-84 (317)
54 cd08360 MhqB_like_C C-terminal 29.2 96 0.0021 22.8 4.0 31 114-144 61-91 (134)
55 cd09012 Glo_EDI_BRP_like_24 Th 29.1 85 0.0018 22.5 3.6 27 117-143 70-96 (124)
56 PF09413 DUF2007: Domain of un 28.8 1.1E+02 0.0025 20.1 3.9 35 119-154 2-36 (67)
57 cd07242 Glo_EDI_BRP_like_6 Thi 28.7 1.1E+02 0.0023 21.8 4.1 31 114-144 67-97 (128)
58 PRK14894 glycyl-tRNA synthetas 28.5 55 0.0012 31.7 3.1 44 121-164 468-516 (539)
59 PRK06724 hypothetical protein; 28.4 90 0.002 23.5 3.7 29 115-143 63-91 (128)
60 PRK14426 acylphosphatase; Prov 28.1 60 0.0013 23.7 2.6 42 131-179 22-63 (92)
61 cd06592 GH31_glucosidase_KIAA1 27.7 68 0.0015 28.0 3.3 51 124-175 27-80 (303)
62 PRK13371 4-hydroxy-3-methylbut 27.6 42 0.00092 31.2 2.1 60 117-178 291-375 (387)
63 PF04273 DUF442: Putative phos 27.5 89 0.0019 23.6 3.5 43 104-146 16-63 (110)
64 cd08361 PpCmtC_N N-terminal do 27.3 1.1E+02 0.0024 22.2 4.0 26 118-143 62-87 (124)
65 cd07261 Glo_EDI_BRP_like_11 Th 27.0 1.3E+02 0.0029 20.9 4.3 29 115-143 59-87 (114)
66 PF12072 DUF3552: Domain of un 27.0 51 0.0011 27.2 2.3 19 7-25 4-22 (201)
67 cd07265 2_3_CTD_N N-terminal d 26.6 1.3E+02 0.0029 21.3 4.3 30 115-144 61-90 (122)
68 COG0052 RpsB Ribosomal protein 26.3 2.3E+02 0.0049 25.0 6.2 51 114-169 154-204 (252)
69 cd02012 TPP_TK Thiamine pyroph 26.2 3.9E+02 0.0085 22.4 8.9 44 104-147 180-224 (255)
70 PF00456 Transketolase_N: Tran 26.2 1.9E+02 0.0041 26.0 6.0 43 106-148 197-241 (332)
71 PF02829 3H: 3H domain; Inter 26.2 76 0.0016 23.8 2.9 28 114-141 69-96 (98)
72 PRK14422 acylphosphatase; Prov 26.0 75 0.0016 23.3 2.8 40 132-178 25-64 (93)
73 smart00450 RHOD Rhodanese Homo 25.9 1.4E+02 0.0031 19.7 4.1 44 110-153 50-93 (100)
74 cd00858 GlyRS_anticodon GlyRS 25.7 2.7E+02 0.0059 20.6 5.9 48 112-164 52-99 (121)
75 cd06557 KPHMT-like Ketopantoat 25.3 3.1E+02 0.0068 23.8 6.9 53 76-144 78-131 (254)
76 PF03129 HGTP_anticodon: Antic 25.3 78 0.0017 21.9 2.7 50 111-164 25-74 (94)
77 PF08671 SinI: Anti-repressor 25.3 77 0.0017 19.0 2.3 16 127-142 3-18 (30)
78 KOG1232 Proteins containing th 25.1 1.6E+02 0.0035 28.0 5.3 45 114-160 87-131 (511)
79 cd01449 TST_Repeat_2 Thiosulfa 25.0 1.4E+02 0.003 21.3 4.2 37 115-151 77-113 (118)
80 cd07258 PpCmtC_C C-terminal do 25.0 1.3E+02 0.0028 23.0 4.1 30 114-143 55-84 (141)
81 COG0106 HisA Phosphoribosylfor 24.7 1.7E+02 0.0037 25.5 5.2 48 103-151 109-171 (241)
82 cd07254 Glo_EDI_BRP_like_20 Th 24.6 1.4E+02 0.0031 21.0 4.1 29 115-143 58-86 (120)
83 TIGR00580 mfd transcription-re 24.5 2.3E+02 0.0049 29.2 6.7 40 106-146 227-266 (926)
84 KOG4516 NADH:ubiquinone oxidor 24.4 43 0.00092 26.1 1.3 17 10-26 60-76 (118)
85 PRK14425 acylphosphatase; Prov 24.4 73 0.0016 23.4 2.5 40 132-178 25-64 (94)
86 PRK05298 excinuclease ABC subu 24.2 2.5E+02 0.0055 27.4 6.8 41 106-147 437-477 (652)
87 COG1184 GCD2 Translation initi 23.8 1.9E+02 0.0041 26.0 5.4 52 89-149 128-179 (301)
88 cd07252 BphC1-RGP6_N_like N-te 23.8 1.4E+02 0.003 21.3 3.9 27 118-144 60-86 (120)
89 PRK07714 hypothetical protein; 23.6 2.4E+02 0.0052 20.6 5.2 42 105-146 23-66 (100)
90 TIGR00782 ccoP cytochrome c ox 23.4 65 0.0014 27.9 2.4 23 5-27 28-50 (285)
91 PF01408 GFO_IDH_MocA: Oxidore 23.3 2.8E+02 0.006 19.7 5.5 37 107-144 78-117 (120)
92 cd07262 Glo_EDI_BRP_like_19 Th 23.3 1.3E+02 0.0029 21.2 3.7 26 117-142 66-91 (123)
93 PRK12856 hypothetical protein; 23.0 1.5E+02 0.0033 22.5 4.0 41 126-167 59-99 (103)
94 COG0036 Rpe Pentose-5-phosphat 22.5 3.3E+02 0.0072 23.4 6.4 45 103-147 71-116 (220)
95 COG1206 Gid NAD(FAD)-utilizing 22.4 1.9E+02 0.0041 27.2 5.2 56 120-179 94-156 (439)
96 cd07239 BphC5-RK37_C_like C-te 22.3 1.4E+02 0.0031 22.6 3.9 29 115-143 59-87 (144)
97 PF00128 Alpha-amylase: Alpha 22.1 91 0.002 25.5 2.9 22 125-148 50-71 (316)
98 cd08348 BphC2-C3-RGP6_C_like T 22.0 1.7E+02 0.0037 21.1 4.1 29 115-143 65-93 (134)
99 PF02769 AIRS_C: AIR synthase 21.8 2.5E+02 0.0055 20.9 5.1 38 108-146 101-139 (153)
100 PRK14436 acylphosphatase; Prov 21.7 98 0.0021 22.5 2.7 40 132-178 23-62 (91)
101 cd04886 ACT_ThrD-II-like C-ter 21.6 1.9E+02 0.004 18.1 3.8 24 119-142 47-70 (73)
102 PRK14440 acylphosphatase; Prov 21.4 1.1E+02 0.0023 22.3 2.8 40 132-178 22-61 (90)
103 PF11823 DUF3343: Protein of u 21.0 2.8E+02 0.0061 18.8 4.9 30 117-146 2-31 (73)
104 PRK00311 panB 3-methyl-2-oxobu 20.9 4.2E+02 0.0092 23.1 6.9 53 76-144 81-134 (264)
105 cd05006 SIS_GmhA Phosphoheptos 20.8 2.5E+02 0.0054 22.0 5.1 40 127-166 115-154 (177)
106 PF06983 3-dmu-9_3-mt: 3-demet 20.6 1.4E+02 0.0029 22.5 3.4 25 117-141 73-97 (116)
107 cd07237 BphC1-RGP6_C_like C-te 20.6 1.6E+02 0.0034 22.5 3.9 30 114-143 72-101 (154)
108 PRK14438 acylphosphatase; Prov 20.6 94 0.002 22.5 2.4 40 132-178 22-61 (91)
109 cd09013 BphC-JF8_N_like N-term 20.6 1.7E+02 0.0036 20.8 3.8 29 115-143 62-90 (121)
110 PRK05601 DNA polymerase III su 20.5 80 0.0017 29.3 2.4 64 70-149 298-361 (377)
111 PRK12855 hypothetical protein; 20.5 1.9E+02 0.0041 21.9 4.1 41 126-167 59-99 (103)
112 TIGR00441 gmhA phosphoheptose 20.3 2.7E+02 0.0058 21.6 5.1 40 126-165 92-131 (154)
113 cd07266 HPCD_N_class_II N-term 20.2 1.7E+02 0.0037 20.5 3.7 29 115-143 60-88 (121)
114 PF10779 XhlA: Haemolysin XhlA 20.2 96 0.0021 21.4 2.3 21 3-23 49-69 (71)
115 PRK12326 preprotein translocas 20.2 3.1E+02 0.0066 27.9 6.5 34 112-146 424-457 (764)
116 KOG1155 Anaphase-promoting com 20.1 69 0.0015 31.0 2.0 48 76-123 355-413 (559)
117 PRK14427 acylphosphatase; Prov 20.1 86 0.0019 23.0 2.1 41 132-179 25-65 (94)
No 1
>KOG3282 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=1.2e-52 Score=343.43 Aligned_cols=175 Identities=53% Similarity=0.817 Sum_probs=148.0
Q ss_pred CchhHHHH-----HHHHHHHhHhhhhcccCCCCcccchhhhhhhhhhhc----cccccccCChHHHhhhccCCCCeEEEE
Q 030232 2 MDLSWLST-----ILFGAGCLAFGYCIGKGCPACFFVSVRRAKNAAVAN----ENKKNKAKEPLEIEKLADILDDFKMVL 72 (181)
Q Consensus 2 ~~~~~~~~-----~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~kmvl 72 (181)
||..|+.+ ++++ +++||++|.....++-.... +. .+... ++..++++.+.|.+.+++..+++||||
T Consensus 6 ~~~~~~~~~~~~~~~v~---~a~g~~~~~~~~i~~ai~~~-~~-~~~~~~~~~~s~~~~sk~~~e~~~l~~~~~~~KMvL 80 (190)
T KOG3282|consen 6 VNSEYLIALRQLGLAVG---AAVGACIGTSLRIGFAIASI-SD-KSVASPFDESSVSSDSKASSESEVLGDLKGNFKMVL 80 (190)
T ss_pred ccHHHHhhhHhhhHHHH---HHHHHHhhhceeeehhhhhh-hh-hhccCccccccccccccchhhhhcccCcCCceEEEE
Confidence 56666653 4444 57999999743333211111 11 11111 233455777888899999999999999
Q ss_pred EEeCCCCCCcchhhhHhhHHHHHHHHHHHhhCHHHHHHHHhcCCCeEEEecCCHHHHHHHHHHHHhCCCCeEEEEcCCCC
Q 030232 73 VVRNDLKMGKGKIAAQCSHATLGLYKKVLYRAPKALNRWEMCAQPKVVLKIESEEDMLVLQERAKSLKLPTHITIDAGRT 152 (181)
Q Consensus 73 vVR~DL~Ms~GKiAAQ~aHAal~~~~~~~~~~~~~l~~W~~~G~~KVvLk~~seeel~~L~~~A~~~gl~~~~i~DAG~T 152 (181)
|||+||+|++||||||||||++++|+++++++|+.+++|+++||+|||||++|+++|.+|++.|++.|+++++|+|||||
T Consensus 81 VVR~DLkMgkGKIAAQc~HAalg~Y~~l~~~~p~ll~~We~~GQ~KIvvk~~~e~~l~~l~~~A~~~gl~t~~i~DAGrT 160 (190)
T KOG3282|consen 81 VVRNDLKMGKGKIAAQCAHAALGVYKHLMQRDPELLRRWENCGQAKIVVKAESEEELMELQKDAKKLGLYTHLIQDAGRT 160 (190)
T ss_pred EEeccCCCccchhHHHHHHHHHHHHHHHHHhCHHHHHHHHHcCCceEEEEcCCHHHHHHHHHHHHHcCCcEEEEEcCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCeeEEEe-cCCccchhhhcCCCCCC
Q 030232 153 QIAPNSRTVMAI-LGPVEVVDDVTGGLKLL 181 (181)
Q Consensus 153 ei~pgs~TvlAi-pgP~~~id~iTg~LKLl 181 (181)
||+|||.||++| |||.+.+|.||||||||
T Consensus 161 QIa~gS~TVl~Igpg~~~~id~VTG~LKL~ 190 (190)
T KOG3282|consen 161 QIAPGSRTVLGIGPGPVEVIDSVTGHLKLY 190 (190)
T ss_pred ccCCCCeEEEEEcCccHHHHhhcCcceeeC
Confidence 999999999999 99999999999999997
No 2
>TIGR00283 arch_pth2 peptidyl-tRNA hydrolase. This model describes an archaeal/eukaryotic form of peptidyl-tRNA hydrolase. Most bacterial forms are described by TIGR00447.
Probab=100.00 E-value=7.3e-48 Score=296.41 Aligned_cols=114 Identities=46% Similarity=0.624 Sum_probs=111.4
Q ss_pred eEEEEEEeCCCCCCcchhhhHhhHHHHHHHHHHHhhCHHHHHHHHhcCCCeEEEecCCHHHHHHHHHHHHhCCCCeEEEE
Q 030232 68 FKMVLVVRNDLKMGKGKIAAQCSHATLGLYKKVLYRAPKALNRWEMCAQPKVVLKIESEEDMLVLQERAKSLKLPTHITI 147 (181)
Q Consensus 68 ~kmvlvVR~DL~Ms~GKiAAQ~aHAal~~~~~~~~~~~~~l~~W~~~G~~KVvLk~~seeel~~L~~~A~~~gl~~~~i~ 147 (181)
+||||+||+||+||+||+||||||||+++|+++.+.+|+++++|++.||+||+|+++|+++|++|.++|++.|+++++|+
T Consensus 1 ~k~vlvVr~DL~M~~GKiaAQ~~HAa~~~~~~~~~~~~~~~~~W~~~G~~KVvlk~~~~~el~~l~~~a~~~~l~~~~v~ 80 (115)
T TIGR00283 1 MKMVIVIRDDLGMGKGKIAAQVCHAAIIGFLKSKRKNPSLRRKWLDEGQKKVVLKVNSLEELLEIYHKAESLGLVTGLIR 80 (115)
T ss_pred CeEEEEEeCCCCCChhHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 59999999999999999999999999999998888889999999999999999999999999999999999999999999
Q ss_pred cCCCCccCCCCeeEEEe-cCCccchhhhcCCCCCC
Q 030232 148 DAGRTQIAPNSRTVMAI-LGPVEVVDDVTGGLKLL 181 (181)
Q Consensus 148 DAG~Tei~pgs~TvlAi-pgP~~~id~iTg~LKLl 181 (181)
|||||||||||.||+|| |+|++.||+||||||||
T Consensus 81 DAG~Tei~pgs~TvlaigP~~~~~id~itg~LkLl 115 (115)
T TIGR00283 81 DAGHTQIPPGTITAVGIGPDEDEKIDKITGDLKLL 115 (115)
T ss_pred cCCcceeCCCCcEEEEECCCCHHHHHHHhCCCccC
Confidence 99999999999999999 99999999999999997
No 3
>cd02430 PTH2 Peptidyl-tRNA hydrolase, type 2 (PTH2). Peptidyl-tRNA hydrolase (PTH) activity releases tRNA from the premature translation termination product peptidyl-tRNA, therefore allowing the tRNA and peptide to be reused in protein synthesis. PTH2 is present in archaea and eukaryotes.
Probab=100.00 E-value=3.2e-47 Score=292.81 Aligned_cols=114 Identities=62% Similarity=0.939 Sum_probs=111.7
Q ss_pred eEEEEEEeCCCCCCcchhhhHhhHHHHHHHHHHHhhCHHHHHHHHhcCCCeEEEecCCHHHHHHHHHHHHhCCCCeEEEE
Q 030232 68 FKMVLVVRNDLKMGKGKIAAQCSHATLGLYKKVLYRAPKALNRWEMCAQPKVVLKIESEEDMLVLQERAKSLKLPTHITI 147 (181)
Q Consensus 68 ~kmvlvVR~DL~Ms~GKiAAQ~aHAal~~~~~~~~~~~~~l~~W~~~G~~KVvLk~~seeel~~L~~~A~~~gl~~~~i~ 147 (181)
+||||+||+||+||+||+||||||||+++|.++.+.+|+++++|++.||+||||+++|+++|++|.++|++.|+++++|+
T Consensus 1 ~K~vivVr~DL~m~~GKiaAQ~~HAa~~~~~~~~~~~~~~~~~W~~~G~~KiVl~~~~~~el~~l~~~a~~~~l~~~~v~ 80 (115)
T cd02430 1 YKMVLVVRNDLKMGKGKIAAQCAHAALGAYKKAMKSNPELLRAWEREGQKKIVLKVNSEEELLELKKKAKSLGLPTSLIQ 80 (115)
T ss_pred CEEEEEEeCCCCCCcchHHHHHHHHHHHHHHHHHhcCHHHHHHHHhcCCcEEEEecCCHHHHHHHHHHHHHcCCCeEEEE
Confidence 69999999999999999999999999999998888899999999999999999999999999999999999999999999
Q ss_pred cCCCCccCCCCeeEEEe-cCCccchhhhcCCCCCC
Q 030232 148 DAGRTQIAPNSRTVMAI-LGPVEVVDDVTGGLKLL 181 (181)
Q Consensus 148 DAG~Tei~pgs~TvlAi-pgP~~~id~iTg~LKLl 181 (181)
|||||||||||.||+|+ |+|++.||+||||||||
T Consensus 81 DAG~Tev~~gt~T~laigP~~~~~i~~itg~LkL~ 115 (115)
T cd02430 81 DAGRTQIAPGTITVLGIGPAPEELIDKVTGHLKLL 115 (115)
T ss_pred eCCCcccCCCCceEEEeCCCCHHHHHHhhCCCcCC
Confidence 99999999999999999 99999999999999997
No 4
>PF01981 PTH2: Peptidyl-tRNA hydrolase PTH2; InterPro: IPR002833 Peptidyl-tRNA hydrolases are enzymes that release tRNAs from peptidyl-tRNA during translation.; GO: 0004045 aminoacyl-tRNA hydrolase activity; PDB: 1RLK_A 1XTY_C 2ZV3_I 2D3K_A 1WN2_A 1Q7S_A 3ERJ_B 1RZW_A.
Probab=100.00 E-value=3.4e-47 Score=291.00 Aligned_cols=115 Identities=53% Similarity=0.797 Sum_probs=109.9
Q ss_pred CeEEEEEEeCCCCCCcchhhhHhhHHHHHHHHHHHhhCHHHHHHHHhcCCCeEEEecCCHHHHHHHHHHHHhCCCCeEEE
Q 030232 67 DFKMVLVVRNDLKMGKGKIAAQCSHATLGLYKKVLYRAPKALNRWEMCAQPKVVLKIESEEDMLVLQERAKSLKLPTHIT 146 (181)
Q Consensus 67 ~~kmvlvVR~DL~Ms~GKiAAQ~aHAal~~~~~~~~~~~~~l~~W~~~G~~KVvLk~~seeel~~L~~~A~~~gl~~~~i 146 (181)
|+|||||||+||+||+||+|||||||++++|+++.+++++++.+|+++||+||||+++|+++|++|.++|++.||++++|
T Consensus 1 ~~k~vivVr~DL~m~~GKiaAQ~~HAa~~~~~~~~~~~~~~~~~W~~~g~~Kivlkv~~e~~L~~l~~~a~~~gl~~~~i 80 (116)
T PF01981_consen 1 ELKMVIVVRKDLKMSKGKIAAQCAHAAVAAYAKLHEDDPEWLREWENNGQKKIVLKVPSEEELLELAKKAKEAGLPHYLI 80 (116)
T ss_dssp SEEEEEEEESSSSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTT-SEEEE
T ss_pred CeEEEEEEECCCCCCcchHHHHHHHHHHHHHHHhhhcCHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHCCCCEEEE
Confidence 68999999999999999999999999999999988888999999999999999999999999999999999999999999
Q ss_pred EcCCCCccCCCCeeEEEe-cCCccchhhhcCCCCCC
Q 030232 147 IDAGRTQIAPNSRTVMAI-LGPVEVVDDVTGGLKLL 181 (181)
Q Consensus 147 ~DAG~Tei~pgs~TvlAi-pgP~~~id~iTg~LKLl 181 (181)
+|||||||||||.||||| |+|++.||+||||||||
T Consensus 81 ~Dag~Tei~pgs~TvlaigP~~~~~i~~it~~LkL~ 116 (116)
T PF01981_consen 81 RDAGRTEIPPGSVTVLAIGPAPKEEIDKITGHLKLL 116 (116)
T ss_dssp EETSSSSSSTTCEEEEEEEEEEHHHHHHHHTTSEB-
T ss_pred EECCCCcCCCCCeEEEEECcCCHHHHHHHhCcCcCC
Confidence 999999999999999999 99999999999999997
No 5
>PRK04322 peptidyl-tRNA hydrolase; Provisional
Probab=100.00 E-value=6e-47 Score=290.49 Aligned_cols=112 Identities=49% Similarity=0.712 Sum_probs=109.7
Q ss_pred EEEEEeCCCCCCcchhhhHhhHHHHHHHHHHHhhCHHHHHHHHhcCCCeEEEecCCHHHHHHHHHHHHhCCCCeEEEEcC
Q 030232 70 MVLVVRNDLKMGKGKIAAQCSHATLGLYKKVLYRAPKALNRWEMCAQPKVVLKIESEEDMLVLQERAKSLKLPTHITIDA 149 (181)
Q Consensus 70 mvlvVR~DL~Ms~GKiAAQ~aHAal~~~~~~~~~~~~~l~~W~~~G~~KVvLk~~seeel~~L~~~A~~~gl~~~~i~DA 149 (181)
|||+||+||+||+||+||||||||+++|+++.+++|+++++|++.||+||||+++|+++|++|.++|++.||++++|+||
T Consensus 1 ~vivVr~DL~M~~GKiaAQ~~HAa~~~~~~~~~~~~~~~~~W~~~G~~Kvvlkv~~~~el~~l~~~a~~~~l~~~~v~DA 80 (113)
T PRK04322 1 QVIVVRTDLKMGKGKLAAQVAHAAVSAYEKADKSNREWLEEWLNEGQKKVVLKVNSEEELLELKEKAERLGLPTALIRDA 80 (113)
T ss_pred CEEEEeCCCCCCcchHHHHHHHHHHHHHHHHHhcCHHHHHHHHHCCCcEEEEeCCCHHHHHHHHHHHHHcCCCEEEEEeC
Confidence 79999999999999999999999999999888888999999999999999999999999999999999999999999999
Q ss_pred CCCccCCCCeeEEEe-cCCccchhhhcCCCCCC
Q 030232 150 GRTQIAPNSRTVMAI-LGPVEVVDDVTGGLKLL 181 (181)
Q Consensus 150 G~Tei~pgs~TvlAi-pgP~~~id~iTg~LKLl 181 (181)
|||||||||.||||| |+|++.||+||||||||
T Consensus 81 G~Tei~~gs~TvlaigP~~~~~i~~itg~LkLl 113 (113)
T PRK04322 81 GLTQLPPGTVTALGIGPAPEEKIDKITGDLKLL 113 (113)
T ss_pred CCcccCCCCcEEEEeCCCCHHHHHHhhCCCcCC
Confidence 999999999999999 99999999999999997
No 6
>cd02407 PTH2_family Peptidyl-tRNA hydrolase, type 2 (PTH2)_like . Peptidyl-tRNA hydrolase activity releases tRNA from the premature translation termination product peptidyl-tRNA. Two structurally different enzymes have been reported to encode such activity, Pth present in bacteria and eukaryotes and Pth2 present in archaea and eukaryotes.
Probab=100.00 E-value=1.9e-46 Score=288.37 Aligned_cols=114 Identities=61% Similarity=0.902 Sum_probs=111.5
Q ss_pred eEEEEEEeCCCCCCcchhhhHhhHHHHHHHHHHHhhCHHHHHHHHhcCCCeEEEecCCHHHHHHHHHHHHhCCCCeEEEE
Q 030232 68 FKMVLVVRNDLKMGKGKIAAQCSHATLGLYKKVLYRAPKALNRWEMCAQPKVVLKIESEEDMLVLQERAKSLKLPTHITI 147 (181)
Q Consensus 68 ~kmvlvVR~DL~Ms~GKiAAQ~aHAal~~~~~~~~~~~~~l~~W~~~G~~KVvLk~~seeel~~L~~~A~~~gl~~~~i~ 147 (181)
+||||+||+||+||+||+||||||||+++|+++.+.+++++++|+.+||+||||+++|+++|++|.++|++.||++++|+
T Consensus 1 ~k~vivVr~dl~m~~GKiaAQ~~HAa~~~~~~~~~~~~~~~~~W~~~g~~KvVl~v~~~~~l~~l~~~a~~~gl~~~~v~ 80 (115)
T cd02407 1 YKMVIVVRNDLKMGKGKIAAQCAHAALAAYKKAMKDPPTLLRAWELEGQKKVVLKVPSEEELLELAKKAKELGLPHSLIQ 80 (115)
T ss_pred CEEEEEEECCCCCChhhHHHHHHHHHHHHHHHHHhCCHHHHHHHHhCCCcEEEEECCCHHHHHHHHHHHHHcCCCeEEEE
Confidence 69999999999999999999999999999999888888999999999999999999999999999999999999999999
Q ss_pred cCCCCccCCCCeeEEEe-cCCccchhhhcCCCCCC
Q 030232 148 DAGRTQIAPNSRTVMAI-LGPVEVVDDVTGGLKLL 181 (181)
Q Consensus 148 DAG~Tei~pgs~TvlAi-pgP~~~id~iTg~LKLl 181 (181)
|||||||||||.||+|| |+|++.||+||||||||
T Consensus 81 DAG~Tqi~~gt~TvlaigP~~~~~i~~itg~LkL~ 115 (115)
T cd02407 81 DAGRTQIPPGTPTVLAIGPAPKEKVDKVTGHLKLL 115 (115)
T ss_pred ECCCcccCCCCceEEEECCCCHHHHHHHcCcCcCC
Confidence 99999999999999999 99999999999999997
No 7
>COG1990 pth2 Peptidyl-tRNA hydrolase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.7e-42 Score=267.50 Aligned_cols=117 Identities=48% Similarity=0.713 Sum_probs=112.2
Q ss_pred CCCeEEEEEEeCCCCCCcchhhhHhhHHHHHHHHHHHhhC--HHHHHHHHhcCCCeEEEecCCHHHHHHHHHHHHhCCCC
Q 030232 65 LDDFKMVLVVRNDLKMGKGKIAAQCSHATLGLYKKVLYRA--PKALNRWEMCAQPKVVLKIESEEDMLVLQERAKSLKLP 142 (181)
Q Consensus 65 ~~~~kmvlvVR~DL~Ms~GKiAAQ~aHAal~~~~~~~~~~--~~~l~~W~~~G~~KVvLk~~seeel~~L~~~A~~~gl~ 142 (181)
..++||+|+||.||+|++||+|||||||++.||.++.+.+ ++++++|++.||+||||||+|+++|.++.++|++.|+|
T Consensus 3 ~~~~k~vIvVr~Dl~m~kGKiaaQvaHaa~~~~~~~~~~~~~~~~~~eWl~~Gq~Kivlkv~~~~eL~~~~~~A~~~gl~ 82 (122)
T COG1990 3 RGQYKMVIVVRDDLKMSKGKLAAQVAHAAVDAAKLAIKSTELDEWLDEWLREGQKKIVLKVGSLDELLELHQKAESLGLP 82 (122)
T ss_pred cccceeEEEEecccccccchHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHHHHHcCCh
Confidence 3579999999999999999999999999999999987765 57999999999999999999999999999999999999
Q ss_pred eEEEEcCCCCccCCCCeeEEEe-cCCccchhhhcCCCCCC
Q 030232 143 THITIDAGRTQIAPNSRTVMAI-LGPVEVVDDVTGGLKLL 181 (181)
Q Consensus 143 ~~~i~DAG~Tei~pgs~TvlAi-pgP~~~id~iTg~LKLl 181 (181)
+.+|+|||+|||||||.||++| |+|.+.+|+|||+||||
T Consensus 83 ~~~i~DaG~TqippGt~T~L~iGP~~~~~iD~iTG~lkL~ 122 (122)
T COG1990 83 TALIRDAGRTQIPPGTITVLGIGPAPEEVIDKITGDLKLL 122 (122)
T ss_pred HHHHHhcCccccCCCCeEEEEECCCchhhhcccccccccC
Confidence 9999999999999999999999 99999999999999997
No 8
>cd02429 PTH2_like Peptidyl-tRNA hydrolase, type 2 (PTH2)_like . Peptidyl-tRNA hydrolase activity releases tRNA from the premature translation termination product peptidyl-tRNA. Two structurally different enzymes have been reported to encode such activity, Pth present in bacteria and eukaryotes and Pth2 present in archaea and eukaryotes. There is no functional information for this eukaryote-specific subgroup.
Probab=100.00 E-value=3.7e-39 Score=248.54 Aligned_cols=108 Identities=23% Similarity=0.285 Sum_probs=100.2
Q ss_pred eEEEEEEeCCC----CCCcchhhhHhhHHHHHHHHHHHhhCHHHHHHH---HhcCCCeEEEecCCHHHHHHHHHHHHhCC
Q 030232 68 FKMVLVVRNDL----KMGKGKIAAQCSHATLGLYKKVLYRAPKALNRW---EMCAQPKVVLKIESEEDMLVLQERAKSLK 140 (181)
Q Consensus 68 ~kmvlvVR~DL----~Ms~GKiAAQ~aHAal~~~~~~~~~~~~~l~~W---~~~G~~KVvLk~~seeel~~L~~~A~~~g 140 (181)
+.||||||+|| +||+||+||||||||+++|+. .+++|+++++| ..+||+||||+++|++||.+|.++|++.|
T Consensus 1 ~vq~ivVR~DL~~~~~m~kGkiaAQ~aHAav~a~~~-~~~~~~~~~~~~~~~~~g~~KVVLkv~~e~eL~~L~~~a~~~g 79 (116)
T cd02429 1 LVQYVILRRDLQTKLSWPLGAVIAQACHAAVAVIHL-FRSDPDTKKYAYLSNLDNMHKVVLEVPDEAALKNLSSKLTENS 79 (116)
T ss_pred CEEEEEEeccccccCCCCccHHHHHHHHHHHHHHHH-HhhCchHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHcC
Confidence 47999999999 999999999999999999875 46688886667 33899999999999999999999999999
Q ss_pred CCeEEEEcCCCCccCCCCeeEEEe-cCCccchhhhcCCCCCC
Q 030232 141 LPTHITIDAGRTQIAPNSRTVMAI-LGPVEVVDDVTGGLKLL 181 (181)
Q Consensus 141 l~~~~i~DAG~Tei~pgs~TvlAi-pgP~~~id~iTg~LKLl 181 (181)
|++++| ||+||||.||+|| |+|.+.||++|||||||
T Consensus 80 i~~~l~-----te~p~gt~T~LaigP~~~~~id~it~~LkLl 116 (116)
T cd02429 80 IKHKLW-----IEQPENIPTCIALKPYPKETVASYLKKLKLL 116 (116)
T ss_pred CCeEEE-----EEcCCCCceEEEeCCCCHHHHHHHhCCCcCC
Confidence 999996 8999999999999 99999999999999997
No 9
>KOG3305 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.79 E-value=5.9e-20 Score=138.23 Aligned_cols=110 Identities=25% Similarity=0.294 Sum_probs=99.2
Q ss_pred CCeEEEEEEeCCC----CCCcchhhhHhhHHHHHHHHHHHhhCHHHHHHHH---hcCCCeEEEecCCHHHHHHHHHHHHh
Q 030232 66 DDFKMVLVVRNDL----KMGKGKIAAQCSHATLGLYKKVLYRAPKALNRWE---MCAQPKVVLKIESEEDMLVLQERAKS 138 (181)
Q Consensus 66 ~~~kmvlvVR~DL----~Ms~GKiAAQ~aHAal~~~~~~~~~~~~~l~~W~---~~G~~KVvLk~~seeel~~L~~~A~~ 138 (181)
+.+.||||+|+|| .|+.|.+++|.|||+.++.+. ++.+++.+.+-. .++|+||+|++++|..|..|.++.+.
T Consensus 2 ~~ivqyivlr~dl~~alswplgaviaq~chas~a~i~~-~~dd~~tl~y~dpq~id~mhkv~le~k~es~lm~lseklk~ 80 (121)
T KOG3305|consen 2 DNIVQYIVLRRDLIDALSWPLGAVIAQGCHASAAAIHL-FKDDADTLAYCDPQDIDNMHKVTLEAKDESALMKLSEKLKE 80 (121)
T ss_pred CcceeEeeehHhhhhhccCchhHHHHhhhhHHHHHHHh-ccCCcchhhcCChhhhhhhhheeeeecChHHHHhHHHHHhc
Confidence 5688999999997 799999999999999998885 455666666552 47899999999999999999999999
Q ss_pred CCCCeEEEEcCCCCccCCCCeeEEEe-cCCccchhhhcCCCCCC
Q 030232 139 LKLPTHITIDAGRTQIAPNSRTVMAI-LGPVEVVDDVTGGLKLL 181 (181)
Q Consensus 139 ~gl~~~~i~DAG~Tei~pgs~TvlAi-pgP~~~id~iTg~LKLl 181 (181)
.+|.+.+|. |+|+|..||||. |+|++.+.++.+||||+
T Consensus 81 ~~i~hklwi-----eqpeniptcia~kpy~k~~v~~f~k~lkl~ 119 (121)
T KOG3305|consen 81 GEIKHKLWI-----EQPENIPTCIALKPYPKDQVHKFFKHLKLC 119 (121)
T ss_pred CCchhhhhh-----cCccCCCceeecCCCcHHHHHHHHHHHHhh
Confidence 999999997 799999999999 99999999999999984
No 10
>PF09391 DUF2000: Protein of unknown function (DUF2000); InterPro: IPR018988 This is a family of proteins of unknown function. The structure of one of the proteins in this family has been shown to adopt an alpha beta fold. ; PDB: 2GAX_A.
Probab=98.32 E-value=1.5e-06 Score=68.70 Aligned_cols=108 Identities=29% Similarity=0.391 Sum_probs=73.9
Q ss_pred CeEEEEEEeCCCCCCcchhhhHhhHHHHHHHHHHHhhCHHHH---------HHH-HhcCCCeEEEecCCHHHHHHHHHHH
Q 030232 67 DFKMVLVVRNDLKMGKGKIAAQCSHATLGLYKKVLYRAPKAL---------NRW-EMCAQPKVVLKIESEEDMLVLQERA 136 (181)
Q Consensus 67 ~~kmvlvVR~DL~Ms~GKiAAQ~aHAal~~~~~~~~~~~~~l---------~~W-~~~G~~KVvLk~~seeel~~L~~~A 136 (181)
+.|.|+|||.||. .|.++-=++|-++++-+.. |+.+ ..| -...++-+||+. |.++|.++.++|
T Consensus 1 d~K~viVv~~~Lp--~g~~~NaaA~L~~~Lg~~~----p~l~G~~~~D~~g~~h~gi~~~PipIL~a-~~~~L~~l~~~a 73 (133)
T PF09391_consen 1 DTKCVIVVDEDLP--PGLAANAAAVLGLGLGAAH----PELVGEDYRDADGNAHPGISHIPIPILKA-NSEQLRELRQKA 73 (133)
T ss_dssp SEEEEEEEETTS---HHHHHHHHHHHHHHHHHH-----GGGB-S-EE-TTS-EE---BSS-EEEEEE--HHHHHHHHHHH
T ss_pred CcEEEEEECCCCh--HHHHHHHHHHHHHHHhccC----ccccCCcccCCCCCCCCCCCCcCeEEEEc-CHHHHHHHHHHH
Confidence 4699999999987 6888888899988877642 2211 111 124688999999 789999999999
Q ss_pred HhCCCCeEEEEcCCC------------CccCCCCeeEEEe--cCCccchhhhcCCCCCC
Q 030232 137 KSLKLPTHITIDAGR------------TQIAPNSRTVMAI--LGPVEVVDDVTGGLKLL 181 (181)
Q Consensus 137 ~~~gl~~~~i~DAG~------------Tei~pgs~TvlAi--pgP~~~id~iTg~LKLl 181 (181)
.+.++.+....+..+ -+.++.....+|| -||+..||++||+|+||
T Consensus 74 ~~~~i~~~~F~~~aq~~~~y~e~~~~~~~~~~~~l~y~Gi~L~G~kk~V~kltg~l~L~ 132 (133)
T PF09391_consen 74 LEREITVVDFTDEAQSTGHYEEYRAAVAATPEEDLEYVGIALFGPKKAVDKLTGSLPLL 132 (133)
T ss_dssp HHTT---EEEEGGGGG---HHHHHHHHTT--TTT--EEEEEEEEEHHHHHHHCTT-EE-
T ss_pred HHCCCeEEeChHHHhhCCCHHHHHHHHhcCChhhccEEEEEEECCHHHHHHHhcCCCCC
Confidence 999998777766553 3455677777777 69999999999999986
No 11
>COG4954 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.42 E-value=0.15 Score=39.69 Aligned_cols=66 Identities=32% Similarity=0.506 Sum_probs=52.4
Q ss_pred cCCCeEEEecCCHHHHHHHHHHHHhCCCCeEEEE--------cCC----CCccCCCCeeEEEe-c-CCccchhhhcCCCC
Q 030232 114 CAQPKVVLKIESEEDMLVLQERAKSLKLPTHITI--------DAG----RTQIAPNSRTVMAI-L-GPVEVVDDVTGGLK 179 (181)
Q Consensus 114 ~G~~KVvLk~~seeel~~L~~~A~~~gl~~~~i~--------DAG----~Tei~pgs~TvlAi-p-gP~~~id~iTg~LK 179 (181)
+=|+-|||.. |++.|..+-..+-++++++.+.+ ||- +.|..|.+.-|++| . ..+..+|+||++-|
T Consensus 54 siqpvivls~-dqetl~aihrraler~vttslyieemfstghdaanravfa~f~pd~akvvgialraekkivdkitkgar 132 (135)
T COG4954 54 SIQPVIVLSG-DQETLKAIHRRALERKVTTSLYIEEMFSTGHDAANRAVFAEFGPDSAKVVGIALRAEKKIVDKITKGAR 132 (135)
T ss_pred ccceEEEEeC-CHHHHHHHHHHHHhcCCCcceeHHHHHhccchHHHHHHHHhhCCCcceeeeeehhhhhHHHHHHccccc
Confidence 3477777766 89999999999999999988763 443 36788999999999 3 34578999999876
Q ss_pred C
Q 030232 180 L 180 (181)
Q Consensus 180 L 180 (181)
+
T Consensus 133 m 133 (135)
T COG4954 133 M 133 (135)
T ss_pred c
Confidence 5
No 12
>TIGR00179 murB UDP-N-acetylenolpyruvoylglucosamine reductase. This model describes MurB, UDP-N-acetylenolpyruvoylglucosamine reductase, which is also called UDP-N-acetylmuramate dehydrogenase. It is part of the pathway for the biosynthesis of the UDP-N-acetylmuramoyl-pentapeptide that is a precursor of bacterial peptidoglycan.
Probab=62.33 E-value=12 Score=32.61 Aligned_cols=37 Identities=19% Similarity=0.267 Sum_probs=32.8
Q ss_pred HHHhcCCCeEEEecCCHHHHHHHHHHHHhCCCCeEEE
Q 030232 110 RWEMCAQPKVVLKIESEEDMLVLQERAKSLKLPTHIT 146 (181)
Q Consensus 110 ~W~~~G~~KVvLk~~seeel~~L~~~A~~~gl~~~~i 146 (181)
.|+-+|.++.++.+.|.+|+.++.+.|+..++|++++
T Consensus 6 t~~igg~a~~~v~p~s~edl~~~l~~a~~~~~p~~vl 42 (284)
T TIGR00179 6 TYKIGGNARHIVCPESIEQLVNVLDNAKEEDQPLLIL 42 (284)
T ss_pred eeecCceeeEEEEeCCHHHHHHHHHHHHHcCCCEEEE
Confidence 3556889999999999999999999999999997754
No 13
>PRK14652 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=57.92 E-value=17 Score=32.15 Aligned_cols=39 Identities=10% Similarity=0.204 Sum_probs=34.2
Q ss_pred HHHHHhcCCCeEEEecCCHHHHHHHHHHHHhCCCCeEEE
Q 030232 108 LNRWEMCAQPKVVLKIESEEDMLVLQERAKSLKLPTHIT 146 (181)
Q Consensus 108 l~~W~~~G~~KVvLk~~seeel~~L~~~A~~~gl~~~~i 146 (181)
+..|.-.|.++.++...|++|+.++.+.++..++|..++
T Consensus 27 ~tt~~igg~a~~~v~p~~~edl~~~v~~a~~~~ip~~vl 65 (302)
T PRK14652 27 RTAVRVGGPADLLVRPADPDALSALLRAVRELGVPLSIL 65 (302)
T ss_pred ccEeecCCcceEEEEcCCHHHHHHHHHHHHHCCCcEEEE
Confidence 456677899999999999999999999999999997653
No 14
>PRK11677 hypothetical protein; Provisional
Probab=57.89 E-value=8 Score=30.73 Aligned_cols=26 Identities=8% Similarity=-0.040 Sum_probs=17.7
Q ss_pred hHHHHHHHHHHHhHhhhhcccCCCCc
Q 030232 5 SWLSTILFGAGCLAFGYCIGKGCPAC 30 (181)
Q Consensus 5 ~~~~~~~~~~~~~~~g~~~g~~~~~~ 30 (181)
+|+.+++.-++++++||+++...+..
T Consensus 2 ~W~~a~i~livG~iiG~~~~R~~~~~ 27 (134)
T PRK11677 2 TWEYALIGLVVGIIIGAVAMRFGNRK 27 (134)
T ss_pred cHHHHHHHHHHHHHHHHHHHhhccch
Confidence 47766655556667999998864443
No 15
>PF12687 DUF3801: Protein of unknown function (DUF3801); InterPro: IPR024234 This functionally uncharacterised protein family is found in bacteria. Proteins found in this family are typically between 158 and 187 amino acids in length and include the PcfB protein.
Probab=57.85 E-value=1.1e+02 Score=25.56 Aligned_cols=66 Identities=15% Similarity=0.226 Sum_probs=46.3
Q ss_pred HHHHHHHHhcCCCeEEEecCCHHHHHHHHHHHHhCCCCeEEEEcCCCCccCCCCeeEEEecCCc-cchhhhc
Q 030232 105 PKALNRWEMCAQPKVVLKIESEEDMLVLQERAKSLKLPTHITIDAGRTQIAPNSRTVMAILGPV-EVVDDVT 175 (181)
Q Consensus 105 ~~~l~~W~~~G~~KVvLk~~seeel~~L~~~A~~~gl~~~~i~DAG~Tei~pgs~TvlAipgP~-~~id~iT 175 (181)
...+..-...|...-++.++ .++|.++...|+..||.|+++.|-. -.||...|+ +++.. +.|..+.
T Consensus 21 k~slk~L~k~g~~l~~i~i~-~~~lk~F~k~AkKyGV~yav~kdk~---~~~~~~~V~-FkA~Da~~i~~af 87 (204)
T PF12687_consen 21 KQSLKKLLKQGKGLKNIEIT-DEDLKEFKKEAKKYGVDYAVKKDKS---TGPGKYDVF-FKAKDADVINRAF 87 (204)
T ss_pred ceeHHHHHhcCCCceEEecC-HhhHHHHHHHHHHcCCceEEeeccC---CCCCcEEEE-EEcCcHHHHHHHH
Confidence 34566666678878888995 4689999999999999999999853 445544444 35543 4444443
No 16
>COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism]
Probab=57.23 E-value=69 Score=28.04 Aligned_cols=43 Identities=21% Similarity=0.273 Sum_probs=36.0
Q ss_pred HHHHHHHhcCCCeEEEecCCHHHHHHHHHHHHh-CCCCeEEEEc
Q 030232 106 KALNRWEMCAQPKVVLKIESEEDMLVLQERAKS-LKLPTHITID 148 (181)
Q Consensus 106 ~~l~~W~~~G~~KVvLk~~seeel~~L~~~A~~-~gl~~~~i~D 148 (181)
+.-..|+..|+.-+-++.+|.+++.+-.++++. .|-|+++|.|
T Consensus 196 pL~~k~eAFGw~V~evdG~d~~~i~~a~~~~~~~~~rP~~IIa~ 239 (243)
T COG3959 196 PLADKWEAFGWEVIEVDGHDIEEIVEALEKAKGSKGRPTVIIAK 239 (243)
T ss_pred hhHHHHHhcCceEEEEcCcCHHHHHHHHHhhhccCCCCeEEEEe
Confidence 456899999999888888889999998888876 4589998876
No 17
>COG0313 Predicted methyltransferases [General function prediction only]
Probab=55.19 E-value=37 Score=30.15 Aligned_cols=70 Identities=19% Similarity=0.260 Sum_probs=46.0
Q ss_pred CHHHHHHHHhcCCCeEEEecCCHHHHHHHHHHHHhCCCCeEEEEcCCCCccC-CC----------CeeEEEecCCccchh
Q 030232 104 APKALNRWEMCAQPKVVLKIESEEDMLVLQERAKSLKLPTHITIDAGRTQIA-PN----------SRTVMAILGPVEVVD 172 (181)
Q Consensus 104 ~~~~l~~W~~~G~~KVvLk~~seeel~~L~~~A~~~gl~~~~i~DAG~Tei~-pg----------s~TvlAipgP~~~id 172 (181)
....+..|.-.. +-+...-.++++........-..|-...+|.|||-.-|. || -+.|..+|||+..+-
T Consensus 42 t~~LL~~~~I~~-~~is~h~hne~~~~~~li~~l~~g~~valVSDAG~P~ISDPG~~LV~~a~~~gi~V~~lPG~sA~~t 120 (275)
T COG0313 42 TRKLLSHLGIKT-PLISYHEHNEKEKLPKLIPLLKKGKSVALVSDAGTPLISDPGYELVRAAREAGIRVVPLPGPSALIT 120 (275)
T ss_pred HHHHHHHhCCCC-ceecccCCcHHHHHHHHHHHHhcCCeEEEEecCCCCcccCccHHHHHHHHHcCCcEEecCCccHHHH
Confidence 345667774322 345555556777766666666677678899999976554 55 367888899987654
Q ss_pred hh
Q 030232 173 DV 174 (181)
Q Consensus 173 ~i 174 (181)
.+
T Consensus 121 AL 122 (275)
T COG0313 121 AL 122 (275)
T ss_pred HH
Confidence 43
No 18
>PRK13906 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=50.62 E-value=23 Score=31.32 Aligned_cols=38 Identities=8% Similarity=0.080 Sum_probs=32.6
Q ss_pred HHHHhcCCCeEEEecCCHHHHHHHHHHHHhCCCCeEEE
Q 030232 109 NRWEMCAQPKVVLKIESEEDMLVLQERAKSLKLPTHIT 146 (181)
Q Consensus 109 ~~W~~~G~~KVvLk~~seeel~~L~~~A~~~gl~~~~i 146 (181)
..|.-.|.+..+++..+++++.++.+.|++.++|+.++
T Consensus 29 tt~~iGG~A~~~v~p~~~edv~~~v~~a~~~~ip~~vl 66 (307)
T PRK13906 29 TYTKTGGNADFYITPTKNEEVQAVVKYAYQNEIPVTYL 66 (307)
T ss_pred eEcCcCceeEEEEEcCCHHHHHHHHHHHHHcCCCEEEE
Confidence 34556788999999999999999999999999997653
No 19
>PRK12436 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=50.54 E-value=26 Score=31.00 Aligned_cols=37 Identities=8% Similarity=0.186 Sum_probs=31.9
Q ss_pred HHHhcCCCeEEEecCCHHHHHHHHHHHHhCCCCeEEE
Q 030232 110 RWEMCAQPKVVLKIESEEDMLVLQERAKSLKLPTHIT 146 (181)
Q Consensus 110 ~W~~~G~~KVvLk~~seeel~~L~~~A~~~gl~~~~i 146 (181)
.|.-.|.+++++...+++++.++.+-|++.++|..++
T Consensus 30 t~~igg~a~~vv~p~~~edv~~~l~~a~~~~ip~~v~ 66 (305)
T PRK12436 30 HIKVGGKADVFVAPTNYDEIQEVIKYANKYNIPVTFL 66 (305)
T ss_pred CcccCceEEEEEecCCHHHHHHHHHHHHHcCCCEEEE
Confidence 3455888999999999999999999999999997653
No 20
>PRK13905 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=49.28 E-value=25 Score=30.70 Aligned_cols=38 Identities=11% Similarity=0.213 Sum_probs=33.1
Q ss_pred HHHHHhcCCCeEEEecCCHHHHHHHHHHHHhCCCCeEE
Q 030232 108 LNRWEMCAQPKVVLKIESEEDMLVLQERAKSLKLPTHI 145 (181)
Q Consensus 108 l~~W~~~G~~KVvLk~~seeel~~L~~~A~~~gl~~~~ 145 (181)
+..|.-.|.+..++...+++|+.++.+.|+..++|..+
T Consensus 22 ~~t~~igg~a~~vv~P~s~edv~~~v~~a~~~~~p~~v 59 (298)
T PRK13905 22 YTSFRVGGPADYLVEPADIEDLQEFLKLLKENNIPVTV 59 (298)
T ss_pred cceeecCceEeEEEeCCCHHHHHHHHHHHHHcCCCEEE
Confidence 35566788999999999999999999999999999765
No 21
>PRK14649 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=49.06 E-value=25 Score=30.89 Aligned_cols=39 Identities=10% Similarity=0.291 Sum_probs=33.9
Q ss_pred HHHHHhcCCCeEEEecCCHHHHHHHHHHHHhCCCCeEEE
Q 030232 108 LNRWEMCAQPKVVLKIESEEDMLVLQERAKSLKLPTHIT 146 (181)
Q Consensus 108 l~~W~~~G~~KVvLk~~seeel~~L~~~A~~~gl~~~~i 146 (181)
+..|.-.|.+...+++.+.++|.++.+.++..++|..++
T Consensus 12 ~tt~~iGg~a~~~v~p~~~~dl~~~l~~~~~~~ip~~vl 50 (295)
T PRK14649 12 YTSWRIGGPARYFVEPTTPDEAIAAAAWAEQRQLPLFWL 50 (295)
T ss_pred ccEeeeCceeeEEEEcCCHHHHHHHHHHHHHCCCCEEEE
Confidence 345667899999999999999999999999999998754
No 22
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. One of the enzymes Vanillyl-alcohol oxidase (VAO, 1.1.3.38 from EC) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110 []. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyses the oxidation of a wide variety of substrates, ranging from aromatic amines to 4-alkylphenols. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZR6_A 3HSU_A 2AXR_A 3D2J_A 3D2H_A 3FW9_A 3FW8_A 3FW7_A 3GSY_A 3FWA_A ....
Probab=47.31 E-value=30 Score=25.84 Aligned_cols=33 Identities=18% Similarity=0.273 Sum_probs=27.5
Q ss_pred eEEEecCCHHHHHHHHHHHHhCCCCeEEEEcCCC
Q 030232 118 KVVLKIESEEDMLVLQERAKSLKLPTHITIDAGR 151 (181)
Q Consensus 118 KVvLk~~seeel~~L~~~A~~~gl~~~~i~DAG~ 151 (181)
..+++..+++|+.++.+.|.+.+++.. ++-.|+
T Consensus 2 ~~vv~P~s~~ev~~~v~~a~~~~~~v~-~~g~G~ 34 (139)
T PF01565_consen 2 AAVVRPKSVEEVQAIVKFANENGVPVR-VRGGGH 34 (139)
T ss_dssp SEEEEESSHHHHHHHHHHHHHTTSEEE-EESSST
T ss_pred cEEEEeCCHHHHHHHHHHHHHcCCcEE-EEcCCC
Confidence 578899999999999999999998754 455554
No 23
>PRK00046 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=46.73 E-value=28 Score=31.51 Aligned_cols=39 Identities=28% Similarity=0.426 Sum_probs=34.5
Q ss_pred HHHHHhcCCCeEEEecCCHHHHHHHHHHHHhCCCCeEEE
Q 030232 108 LNRWEMCAQPKVVLKIESEEDMLVLQERAKSLKLPTHIT 146 (181)
Q Consensus 108 l~~W~~~G~~KVvLk~~seeel~~L~~~A~~~gl~~~~i 146 (181)
+..|.-+|.+...++..|.++|.++.+.++..++|+.++
T Consensus 12 ~tt~riGG~A~~~~~p~~~~el~~~~~~~~~~~~p~~vl 50 (334)
T PRK00046 12 LNTFGIDARARHLVEAESEEQLLEALADARAAGLPVLVL 50 (334)
T ss_pred cceeccCcEEeEEEeeCCHHHHHHHHHHHHHcCCCEEEE
Confidence 456777899999999999999999999999999998764
No 24
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=46.34 E-value=12 Score=33.61 Aligned_cols=60 Identities=25% Similarity=0.330 Sum_probs=42.9
Q ss_pred eEEEecCCHHHHHHHHHHHHhCCCCeEEEEcCCCCccCCC---CeeEEEe-cC---CccchhhhcCCCC
Q 030232 118 KVVLKIESEEDMLVLQERAKSLKLPTHITIDAGRTQIAPN---SRTVMAI-LG---PVEVVDDVTGGLK 179 (181)
Q Consensus 118 KVvLk~~seeel~~L~~~A~~~gl~~~~i~DAG~Tei~pg---s~TvlAi-pg---P~~~id~iTg~LK 179 (181)
-+|+..++-..=.+|++-|++.|.+.+.|-++. +|+++ ....++| -| |...|+.|..+|+
T Consensus 216 ~iVVG~~nSSNs~rL~eiA~~~g~~aylId~~~--ei~~~w~~~~~~VGvTAGAStPd~lV~~Vi~~l~ 282 (294)
T COG0761 216 VIVVGSKNSSNSNRLAEIAKRHGKPAYLIDDAE--EIDPEWLKGVKTVGVTAGASTPDWLVQEVIAKLR 282 (294)
T ss_pred EEEECCCCCccHHHHHHHHHHhCCCeEEeCChH--hCCHHHhcCccEEEEecCCCCCHHHHHHHHHHHH
Confidence 466666666777888999999999999987765 56653 2456677 55 6677777766553
No 25
>PRK13903 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=46.00 E-value=33 Score=31.31 Aligned_cols=39 Identities=10% Similarity=0.174 Sum_probs=34.1
Q ss_pred HHHHHhcCCCeEEEecCCHHHHHHHHHHHHhCCCCeEEE
Q 030232 108 LNRWEMCAQPKVVLKIESEEDMLVLQERAKSLKLPTHIT 146 (181)
Q Consensus 108 l~~W~~~G~~KVvLk~~seeel~~L~~~A~~~gl~~~~i 146 (181)
+..|.-.|.++.++.+.|++++.++.+.++..++|+.++
T Consensus 24 ~tt~~iGg~A~~~~~p~s~edl~~~l~~a~~~~~p~~vl 62 (363)
T PRK13903 24 LTTLRVGGPARRLVTCTSTEELVAAVRELDAAGEPLLVL 62 (363)
T ss_pred ccEeecCccceEEEEeCCHHHHHHHHHHHHHCCCCEEEE
Confidence 455677899999999999999999999999999997754
No 26
>cd02193 PurL Formylglycinamide ribonucleotide amidotransferase (FGAR-AT) catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, phosphate, and glutamate in the fourth step of the purine biosynthetic pathway. In eukaryotes and Gram-negative bacteria, FGAR-AT is encoded by the purL gene as a multidomain protein with a molecular mass of about 140 kDa. In Gram-positive bacteria and archaea FGAR-AT is a complex of three proteins: PurS, PurL, and PurQ. PurL itself contains two tandem N- and C-terminal domains (four domains altogether). The N-terminal domains bind ATP and are related to the ATP-binding domains of HypE, ThiL, SelD and PurM.
Probab=45.86 E-value=43 Score=28.58 Aligned_cols=38 Identities=21% Similarity=0.179 Sum_probs=30.4
Q ss_pred HHHHHhcCCCeEEEecCCHHHHHHHHHHHHhCCCCeEEE
Q 030232 108 LNRWEMCAQPKVVLKIESEEDMLVLQERAKSLKLPTHIT 146 (181)
Q Consensus 108 l~~W~~~G~~KVvLk~~seeel~~L~~~A~~~gl~~~~i 146 (181)
+..|...++...++.++ .++..++.+.+++.|+++.+|
T Consensus 232 ~~~~~ses~~~~l~~v~-~~~~~~~~~~~~~~gi~~~~I 269 (272)
T cd02193 232 LEIALFESQERGVIQVR-AEDRDAVEEAQYGLADCVHVL 269 (272)
T ss_pred HHHHHhhhccCeEEEEC-HHHHHHHHHHHhccCCCeEEe
Confidence 56677777778899895 566888889999999998776
No 27
>PF14026 DUF4242: Protein of unknown function (DUF4242)
Probab=44.45 E-value=22 Score=25.25 Aligned_cols=38 Identities=16% Similarity=0.094 Sum_probs=27.1
Q ss_pred HHHHHHh--cCCCeEEEecCCHHHHHHHHHHHHhCCCCeEEEE
Q 030232 107 ALNRWEM--CAQPKVVLKIESEEDMLVLQERAKSLKLPTHITI 147 (181)
Q Consensus 107 ~l~~W~~--~G~~KVvLk~~seeel~~L~~~A~~~gl~~~~i~ 147 (181)
|+..|.. .|..=.+...||+|...+..++ .|+|+-.|.
T Consensus 36 w~~s~v~~d~~k~~Cly~Ap~~eaV~~~~~~---aG~p~d~I~ 75 (77)
T PF14026_consen 36 WLRSYVSEDDGKIFCLYEAPDEEAVREHARR---AGLPADRIT 75 (77)
T ss_pred EEEEEEecCCCeEEEEEECCCHHHHHHHHHH---cCCCcceEE
Confidence 6667754 5655667889999977766554 499987764
No 28
>PRK14650 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=42.98 E-value=32 Score=30.69 Aligned_cols=39 Identities=15% Similarity=0.156 Sum_probs=34.2
Q ss_pred HHHHHhcCCCeEEEecCCHHHHHHHHHHHHhCCCCeEEE
Q 030232 108 LNRWEMCAQPKVVLKIESEEDMLVLQERAKSLKLPTHIT 146 (181)
Q Consensus 108 l~~W~~~G~~KVvLk~~seeel~~L~~~A~~~gl~~~~i 146 (181)
+..|.-+|.++..+...|.++|.++.+.++..++|+.++
T Consensus 24 ~tt~~iGG~A~~~~~p~~~~eL~~~l~~~~~~~~p~~vl 62 (302)
T PRK14650 24 YTTYKIGGISKLFLTPKTIKDAEHIFKAAIEEKIKIFIL 62 (302)
T ss_pred cceeeeCcEEEEEEecCCHHHHHHHHHHHHHcCCCEEEE
Confidence 456677899999999999999999999999999998764
No 29
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=42.07 E-value=70 Score=23.32 Aligned_cols=39 Identities=18% Similarity=0.194 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHhCCCCeEEEEcCCCCccCCCCeeEEEec
Q 030232 127 EDMLVLQERAKSLKLPTHITIDAGRTQIAPNSRTVMAIL 165 (181)
Q Consensus 127 eel~~L~~~A~~~gl~~~~i~DAG~Tei~pgs~TvlAip 165 (181)
.++.+..+.|+++|+++..+.+....++.+..-.++-+|
T Consensus 61 ~~~~~~~~~a~~~g~~vi~iT~~~~s~la~~ad~~l~~~ 99 (128)
T cd05014 61 DELLNLLPHLKRRGAPIIAITGNPNSTLAKLSDVVLDLP 99 (128)
T ss_pred HHHHHHHHHHHHCCCeEEEEeCCCCCchhhhCCEEEECC
Confidence 578899999999999999999988888887766666553
No 30
>cd08347 PcpA_C_like C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The C-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=40.10 E-value=1.2e+02 Score=23.64 Aligned_cols=66 Identities=23% Similarity=0.287 Sum_probs=42.3
Q ss_pred CCCeEEEecCCHHHHHHHHHHHHhCCCCeEEEEcCCC-----CccCCCCeeEEEecCCc----cchhhhcCCCCC
Q 030232 115 AQPKVVLKIESEEDMLVLQERAKSLKLPTHITIDAGR-----TQIAPNSRTVMAILGPV----EVVDDVTGGLKL 180 (181)
Q Consensus 115 G~~KVvLk~~seeel~~L~~~A~~~gl~~~~i~DAG~-----Tei~pgs~TvlAipgP~----~~id~iTg~LKL 180 (181)
+..-+.+.++|.+++.++.+++++.|+...-..|.+. .+=|.|..--+....|. +..|++-..|||
T Consensus 65 ~l~Hiaf~v~d~~dvd~~~~~L~~~Gv~~~~~~~~~~~~s~yf~DPdG~~iEl~~~~~~~~~~~~~~~~~~~~~~ 139 (157)
T cd08347 65 TVHHVAFRVPDDEELEAWKERLEALGLPVSGIVDRFYFKSLYFREPGGILFEIATDGPGFTVDEPLEELGERLKL 139 (157)
T ss_pred ceEEEEEECCCHHHHHHHHHHHHHCCCCcccccccccEEEEEEECCCCcEEEEEECCCCccccCChhHcCCccCC
Confidence 4446889999999999999999999986433233221 22245554434332332 467777777776
No 31
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=38.54 E-value=57 Score=22.81 Aligned_cols=29 Identities=17% Similarity=0.166 Sum_probs=25.5
Q ss_pred CCCeEEEecCCHHHHHHHHHHHHhCCCCe
Q 030232 115 AQPKVVLKIESEEDMLVLQERAKSLKLPT 143 (181)
Q Consensus 115 G~~KVvLk~~seeel~~L~~~A~~~gl~~ 143 (181)
|..-+.++++|.+++.++.+++++.|++.
T Consensus 70 g~~hi~f~v~~~~~v~~~~~~l~~~g~~~ 98 (125)
T cd07241 70 GWAHLAFSVGSKEAVDELTERLRADGYLI 98 (125)
T ss_pred ceEEEEEECCCHHHHHHHHHHHHHCCCEE
Confidence 55669999999999999999999999854
No 32
>PF02426 MIase: Muconolactone delta-isomerase; InterPro: IPR003464 This small enzyme forms a homodecameric complex, that catalyses the third step in the catabolism of catechol to succinate- and acetyl-coa in the beta-ketoadipate pathway (5.3.3.4 from EC). The protein has a ferredoxin-like fold according to SCOP.; GO: 0006725 cellular aromatic compound metabolic process
Probab=38.44 E-value=51 Score=24.48 Aligned_cols=74 Identities=16% Similarity=0.262 Sum_probs=43.7
Q ss_pred EEEEEeCCCCCCcchhhhHhhHH--HHHHHHHHHhhCHHHHHHHHhcCC--CeEEEecCCHHHHHHHHHHHHhCCCCeEE
Q 030232 70 MVLVVRNDLKMGKGKIAAQCSHA--TLGLYKKVLYRAPKALNRWEMCAQ--PKVVLKIESEEDMLVLQERAKSLKLPTHI 145 (181)
Q Consensus 70 mvlvVR~DL~Ms~GKiAAQ~aHA--al~~~~~~~~~~~~~l~~W~~~G~--~KVvLk~~seeel~~L~~~A~~~gl~~~~ 145 (181)
|-+.|+.+.+.+.+--+++..-. .=..|..-.++.-.+..-|+..|+ .-.+..++|.+||.++.. ++|-+-
T Consensus 1 Mlflv~m~v~~P~~~~~~~~~~~~a~E~~~a~eLq~~G~~~~lWr~~G~~~n~~Ifdv~d~~eLh~lL~-----sLPL~p 75 (91)
T PF02426_consen 1 MLFLVRMTVNVPPDMPPEEVDRLKAREKARAQELQRQGKWRHLWRVVGRYANVSIFDVEDNDELHELLS-----SLPLFP 75 (91)
T ss_pred CeEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeeEEEEecCCcceEEEEECCCHHHHHHHHH-----hCCCcc
Confidence 45678888887777666654322 111221112233445666766554 235678999999998875 456666
Q ss_pred EEc
Q 030232 146 TID 148 (181)
Q Consensus 146 i~D 148 (181)
+.|
T Consensus 76 ~m~ 78 (91)
T PF02426_consen 76 YMD 78 (91)
T ss_pred cee
Confidence 553
No 33
>PRK14648 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=37.88 E-value=44 Score=30.66 Aligned_cols=39 Identities=13% Similarity=0.180 Sum_probs=34.3
Q ss_pred HHHHHhcCCCeEEEecCCHHHHHHHHHHHHhCCCCeEEE
Q 030232 108 LNRWEMCAQPKVVLKIESEEDMLVLQERAKSLKLPTHIT 146 (181)
Q Consensus 108 l~~W~~~G~~KVvLk~~seeel~~L~~~A~~~gl~~~~i 146 (181)
+..|.-+|.+...+...+.++|.++.+.++..++|+.++
T Consensus 21 ~tT~rIGG~A~~~~~p~s~~el~~~l~~~~~~~~p~~iL 59 (354)
T PRK14648 21 RCSFRIGGAAQFWAEPRSCTQLRALIEEAQRARIPLSLI 59 (354)
T ss_pred cceeeeCcEEEEEEeeCCHHHHHHHHHHHHHcCCCEEEE
Confidence 455677899999999999999999999999999998754
No 34
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=37.85 E-value=16 Score=32.21 Aligned_cols=60 Identities=23% Similarity=0.292 Sum_probs=41.0
Q ss_pred CeEEEecCCHHHHHHHHHHHHhCCCCeEEEEcCCCCccCCC---CeeEEEe-cC---CccchhhhcCCC
Q 030232 117 PKVVLKIESEEDMLVLQERAKSLKLPTHITIDAGRTQIAPN---SRTVMAI-LG---PVEVVDDVTGGL 178 (181)
Q Consensus 117 ~KVvLk~~seeel~~L~~~A~~~gl~~~~i~DAG~Tei~pg---s~TvlAi-pg---P~~~id~iTg~L 178 (181)
.-+|+..++-..=.+|++-|++.|.+++.|-++. |+++. ....+|| -| |...|++|...|
T Consensus 212 ~miVIGg~~SsNT~kL~eia~~~~~~t~~Ie~~~--el~~~~l~~~~~VGItaGASTP~~ii~eVi~~l 278 (281)
T PF02401_consen 212 AMIVIGGKNSSNTRKLAEIAKEHGKPTYHIETAD--ELDPEWLKGVKKVGITAGASTPDWIIEEVIDRL 278 (281)
T ss_dssp EEEEES-TT-HHHHHHHHHHHHCTTCEEEESSGG--G--HHHHTT-SEEEEEE-TTS-HHHHHHHHHHH
T ss_pred EEEEecCCCCccHHHHHHHHHHhCCCEEEeCCcc--ccCHhHhCCCCEEEEEccCCCCHHHHHHHHHHH
Confidence 4577778888889999999999999999998876 67652 2446677 55 777888876654
No 35
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=37.46 E-value=69 Score=23.27 Aligned_cols=39 Identities=18% Similarity=0.097 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHhCCCCeEEEEcCCCCccCCCCeeEEEec
Q 030232 127 EDMLVLQERAKSLKLPTHITIDAGRTQIAPNSRTVMAIL 165 (181)
Q Consensus 127 eel~~L~~~A~~~gl~~~~i~DAG~Tei~pgs~TvlAip 165 (181)
+++.+..+.|+++|.+...|.+...+.+..-+--++-+|
T Consensus 60 ~e~~~~~~~a~~~g~~vi~iT~~~~s~la~~ad~~l~~~ 98 (126)
T cd05008 60 ADTLAALRLAKEKGAKTVAITNVVGSTLAREADYVLYLR 98 (126)
T ss_pred HHHHHHHHHHHHcCCeEEEEECCCCChHHHhCCEEEEec
Confidence 478899999999999999998887777776555565554
No 36
>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge
Probab=36.97 E-value=1.5e+02 Score=20.75 Aligned_cols=29 Identities=14% Similarity=0.082 Sum_probs=25.4
Q ss_pred CCCeEEEecCCHHHHHHHHHHHHhCCCCe
Q 030232 115 AQPKVVLKIESEEDMLVLQERAKSLKLPT 143 (181)
Q Consensus 115 G~~KVvLk~~seeel~~L~~~A~~~gl~~ 143 (181)
+..-+.+.+++.+++.++.++++..|+..
T Consensus 58 ~~~~~~~~v~~~~~l~~~~~~l~~~G~~~ 86 (120)
T cd08362 58 RLDVVSFSVASRADVDALARQVAARGGTV 86 (120)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHcCCce
Confidence 45678999999999999999999999864
No 37
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=36.89 E-value=64 Score=22.68 Aligned_cols=31 Identities=23% Similarity=0.127 Sum_probs=25.1
Q ss_pred cCCCeEEEecCC-HHHHHHHHHHHHhCCCCeE
Q 030232 114 CAQPKVVLKIES-EEDMLVLQERAKSLKLPTH 144 (181)
Q Consensus 114 ~G~~KVvLk~~s-eeel~~L~~~A~~~gl~~~ 144 (181)
.+.-.+++++++ .+++.++.+..++.|..+.
T Consensus 39 ~~~v~i~ie~~~~~~~~~~i~~~L~~~G~~~~ 70 (85)
T cd04906 39 DAHIFVGVSVANGAEELAELLEDLKSAGYEVV 70 (85)
T ss_pred eeEEEEEEEeCCcHHHHHHHHHHHHHCCCCeE
Confidence 444556679999 9999999999999998654
No 38
>PTZ00222 60S ribosomal protein L7a; Provisional
Probab=36.87 E-value=39 Score=29.89 Aligned_cols=56 Identities=20% Similarity=0.278 Sum_probs=37.6
Q ss_pred hcCCCeEEEecCCHHHHHH---HHHHHHhCCCCeEEEEcCCCC--ccCCCCeeEEEe--cCCc
Q 030232 113 MCAQPKVVLKIESEEDMLV---LQERAKSLKLPTHITIDAGRT--QIAPNSRTVMAI--LGPV 168 (181)
Q Consensus 113 ~~G~~KVvLk~~seeel~~---L~~~A~~~gl~~~~i~DAG~T--ei~pgs~TvlAi--pgP~ 168 (181)
+.+..+.|+-..|.++... |-..+++.|||+++|-+.-+- -+--.+.||+|| .|+.
T Consensus 145 ekkKAkLVIIA~DVsPie~vk~LpaLCrk~~VPY~iVktKaeLG~AIGkKtravVAItD~g~e 207 (263)
T PTZ00222 145 EKKQARMVVIANNVDPVELVLWMPNLCRANKIPYAIVKDMARLGDAIGRKTATCVAITDVNAE 207 (263)
T ss_pred HcCCceEEEEeCCCCHHHHHHHHHHHHHhcCCCEEEECCHHHHHHHHCCCCCeEEEEeeCCcc
Confidence 4578888888888554433 778899999999888643110 011125889998 6774
No 39
>PF14715 FixP_N: N-terminal domain of cytochrome oxidase-cbb3, FixP
Probab=36.45 E-value=36 Score=22.65 Aligned_cols=20 Identities=25% Similarity=0.607 Sum_probs=15.8
Q ss_pred hHHHHHHHHHHHhHhhhhcc
Q 030232 5 SWLSTILFGAGCLAFGYCIG 24 (181)
Q Consensus 5 ~~~~~~~~~~~~~~~g~~~g 24 (181)
+|+..+..++++|+++|++-
T Consensus 22 ~ww~~~f~~tivfa~~Y~~~ 41 (51)
T PF14715_consen 22 RWWLWLFYGTIVFAVGYLVL 41 (51)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 36667788888999999875
No 40
>PRK14653 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=35.96 E-value=41 Score=29.80 Aligned_cols=38 Identities=8% Similarity=0.034 Sum_probs=32.7
Q ss_pred HHHHHhcCCCeEEEecCCHHHHHHHHHHHHhCCCCeEEE
Q 030232 108 LNRWEMCAQPKVVLKIESEEDMLVLQERAKSLKLPTHIT 146 (181)
Q Consensus 108 l~~W~~~G~~KVvLk~~seeel~~L~~~A~~~gl~~~~i 146 (181)
+..|.-+|.+..++...|.+++.++.+.++. ++|+.++
T Consensus 25 ~tt~~iGG~A~~~v~p~s~eel~~~~~~~~~-~~p~~vl 62 (297)
T PRK14653 25 HVSFKIGGPVPLFAIPNSTNGFIETINLLKE-GIEVKIL 62 (297)
T ss_pred cCEeeeCcEEEEEEecCCHHHHHHHHHHHhc-CCCEEEE
Confidence 3456678999999999999999999999998 9998764
No 41
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=35.43 E-value=65 Score=21.49 Aligned_cols=29 Identities=31% Similarity=0.441 Sum_probs=24.0
Q ss_pred cCCCeEEEecCCHHHHHHHHHHHHhCCCC
Q 030232 114 CAQPKVVLKIESEEDMLVLQERAKSLKLP 142 (181)
Q Consensus 114 ~G~~KVvLk~~seeel~~L~~~A~~~gl~ 142 (181)
.+.-.+.+++++.+++.++.+..++.|..
T Consensus 37 ~~~v~v~ie~~~~~~~~~i~~~L~~~G~~ 65 (68)
T cd04885 37 EARVLVGIQVPDREDLAELKERLEALGYP 65 (68)
T ss_pred ceEEEEEEEeCCHHHHHHHHHHHHHcCCC
Confidence 34455778999999999999999999864
No 42
>cd08346 PcpA_N_like N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=34.42 E-value=66 Score=22.44 Aligned_cols=29 Identities=17% Similarity=0.338 Sum_probs=25.2
Q ss_pred CCCeEEEecCCHHHHHHHHHHHHhCCCCe
Q 030232 115 AQPKVVLKIESEEDMLVLQERAKSLKLPT 143 (181)
Q Consensus 115 G~~KVvLk~~seeel~~L~~~A~~~gl~~ 143 (181)
+..-+.+.++|.+++.++.+++++.|++.
T Consensus 73 ~~~hi~f~v~~~~~~~~~~~~~~~~g~~~ 101 (126)
T cd08346 73 QIHHIAFSVPSEASLDAWRERLRAAGVPV 101 (126)
T ss_pred cEEEEEEEcCCHHHHHHHHHHHHHcCCcc
Confidence 44568999999999999999999999875
No 43
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=34.00 E-value=68 Score=25.14 Aligned_cols=49 Identities=22% Similarity=0.318 Sum_probs=24.9
Q ss_pred HHHHHHHHhcCCCeEEE-e---cCCHHHHHHHHHHHHhCCCCeEEEEcCCCCccC
Q 030232 105 PKALNRWEMCAQPKVVL-K---IESEEDMLVLQERAKSLKLPTHITIDAGRTQIA 155 (181)
Q Consensus 105 ~~~l~~W~~~G~~KVvL-k---~~seeel~~L~~~A~~~gl~~~~i~DAG~Tei~ 155 (181)
.+++++|.++...|+++ - ..|.+++.+...++... -|. ++.-+|||+.-
T Consensus 43 ~d~l~~~~~D~~t~~I~ly~E~~~d~~~f~~~~~~a~~~-KPV-v~lk~Grt~~g 95 (138)
T PF13607_consen 43 ADLLEYLAEDPDTRVIVLYLEGIGDGRRFLEAARRAARR-KPV-VVLKAGRTEAG 95 (138)
T ss_dssp HHHHHHHCT-SS--EEEEEES--S-HHHHHHHHHHHCCC-S-E-EEEE-------
T ss_pred HHHHHHHhcCCCCCEEEEEccCCCCHHHHHHHHHHHhcC-CCE-EEEeCCCchhh
Confidence 46788887777666655 3 45677787877777655 554 56678887663
No 44
>COG0812 MurB UDP-N-acetylmuramate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=33.02 E-value=42 Score=29.99 Aligned_cols=38 Identities=18% Similarity=0.273 Sum_probs=33.2
Q ss_pred HHHHhcCCCeEEEecCCHHHHHHHHHHHHhCCCCeEEE
Q 030232 109 NRWEMCAQPKVVLKIESEEDMLVLQERAKSLKLPTHIT 146 (181)
Q Consensus 109 ~~W~~~G~~KVvLk~~seeel~~L~~~A~~~gl~~~~i 146 (181)
..|+-+|.+++.+.+.|.+++.++.+.++..++|..++
T Consensus 13 ttfriGg~A~~~~~~~~~e~l~~~~~~~~~~~~p~~il 50 (291)
T COG0812 13 TTFRIGGPAEVLVEPRDIEELKAALKYAKAEDLPVLIL 50 (291)
T ss_pred eeEecCcceeEEEecCCHHHHHHHHHhhhhcCCCEEEE
Confidence 44566899999999999999999999999999997654
No 45
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=32.97 E-value=1.2e+02 Score=20.81 Aligned_cols=49 Identities=18% Similarity=0.195 Sum_probs=34.6
Q ss_pred HhcCCCeEEEecCCHHHHHHHHHHHHhCCCCeEEEEcCCCCccCCCCeeEEEe
Q 030232 112 EMCAQPKVVLKIESEEDMLVLQERAKSLKLPTHITIDAGRTQIAPNSRTVMAI 164 (181)
Q Consensus 112 ~~~G~~KVvLk~~seeel~~L~~~A~~~gl~~~~i~DAG~Tei~pgs~TvlAi 164 (181)
+..|. ++.+-.. ...+..-.+.|...|+|+.+|. |..|+..|++++--.
T Consensus 28 r~~g~-~v~~d~~-~~~l~k~i~~a~~~g~~~~iii--G~~e~~~~~v~vk~~ 76 (94)
T cd00861 28 QAAGV-DVLLDDR-NERPGVKFADADLIGIPYRIVV--GKKSAAEGIVEIKVR 76 (94)
T ss_pred HHCCC-EEEEECC-CCCcccchhHHHhcCCCEEEEE--CCchhhCCEEEEEEC
Confidence 34464 4555443 3478888889999999999887 556788888777544
No 46
>COG5304 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.95 E-value=54 Score=24.58 Aligned_cols=28 Identities=18% Similarity=0.472 Sum_probs=23.7
Q ss_pred CCeEEEecCCHHHHHHHHHHHHhCCCCeE
Q 030232 116 QPKVVLKIESEEDMLVLQERAKSLKLPTH 144 (181)
Q Consensus 116 ~~KVvLk~~seeel~~L~~~A~~~gl~~~ 144 (181)
-+.|.+++ ++..|..+..+|-..|+|+-
T Consensus 51 d~riniRl-ss~dLeaIK~kaSa~GlpYQ 78 (92)
T COG5304 51 DTRINIRL-SSSDLEAIKQKASAEGLPYQ 78 (92)
T ss_pred cceeeEec-CHHHHHHHHHHHhhcCCcHH
Confidence 35699999 46789999999999999974
No 47
>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain. This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa
Probab=32.58 E-value=98 Score=21.42 Aligned_cols=30 Identities=17% Similarity=0.254 Sum_probs=25.9
Q ss_pred CCCeEEEecCCHHHHHHHHHHHHhCCCCeE
Q 030232 115 AQPKVVLKIESEEDMLVLQERAKSLKLPTH 144 (181)
Q Consensus 115 G~~KVvLk~~seeel~~L~~~A~~~gl~~~ 144 (181)
+...+.+.+++.+++.++.+.+++.|+...
T Consensus 57 ~~~h~~~~v~~~~~v~~~~~~l~~~g~~~~ 86 (117)
T cd07240 57 GVDALGFEVASEEDLEALAAHLEAAGVAPE 86 (117)
T ss_pred CceeEEEEcCCHHHHHHHHHHHHHcCCceE
Confidence 556789999999999999999999998653
No 48
>PF15608 PELOTA_1: PELOTA RNA binding domain
Probab=32.02 E-value=99 Score=23.49 Aligned_cols=40 Identities=18% Similarity=0.194 Sum_probs=31.3
Q ss_pred CeEEEecCCHHHHHHHHHHHHhCCCCeEEEEcCCCCccCCCCeeEEEe
Q 030232 117 PKVVLKIESEEDMLVLQERAKSLKLPTHITIDAGRTQIAPNSRTVMAI 164 (181)
Q Consensus 117 ~KVvLk~~seeel~~L~~~A~~~gl~~~~i~DAG~Tei~pgs~TvlAi 164 (181)
-||.++-.+..++.-|...|++.|+|....-|- +..|++|
T Consensus 57 ~~vLVr~~~~pd~~Hl~~LA~ekgVpVe~~~d~--------~Y~a~gl 96 (100)
T PF15608_consen 57 WKVLVRDPDDPDLAHLLLLAEEKGVPVEVYPDL--------PYSACGL 96 (100)
T ss_pred CEEEECCCCCccHHHHHHHHHHcCCcEEEeCCC--------CeEEEEE
Confidence 378888778789999999999999997765443 4567665
No 49
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=31.10 E-value=97 Score=24.31 Aligned_cols=41 Identities=12% Similarity=0.208 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHhCCCCeEEEEcCCCCccCCCCeeEEEecC
Q 030232 126 EEDMLVLQERAKSLKLPTHITIDAGRTQIAPNSRTVMAILG 166 (181)
Q Consensus 126 eeel~~L~~~A~~~gl~~~~i~DAG~Tei~pgs~TvlAipg 166 (181)
-.++.++.+.|++.|.+...|.|.....+..-+-.++.+|.
T Consensus 85 t~~~i~~~~~ak~~g~~ii~IT~~~~s~la~~ad~~l~~~~ 125 (179)
T TIGR03127 85 TESLVTVAKKAKEIGATVAAITTNPESTLGKLADVVVEIPA 125 (179)
T ss_pred cHHHHHHHHHHHHCCCeEEEEECCCCCchHHhCCEEEEeCC
Confidence 36788999999999999999999887777776666666643
No 50
>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=30.48 E-value=85 Score=22.16 Aligned_cols=29 Identities=17% Similarity=0.229 Sum_probs=24.9
Q ss_pred CCCeEEEecCCHHHHHHHHHHHHhCCCCe
Q 030232 115 AQPKVVLKIESEEDMLVLQERAKSLKLPT 143 (181)
Q Consensus 115 G~~KVvLk~~seeel~~L~~~A~~~gl~~ 143 (181)
|..-+.+.++|.++++++.+++++.|+..
T Consensus 64 ~~~hi~f~v~~~~~v~~~~~~l~~~g~~~ 92 (125)
T cd07255 64 GLYHFAILLPSRADLAAALRRLIELGIPL 92 (125)
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHcCCce
Confidence 44567899999999999999999999864
No 51
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=30.37 E-value=39 Score=29.91 Aligned_cols=61 Identities=20% Similarity=0.265 Sum_probs=44.4
Q ss_pred CeEEEecCCHHHHHHHHHHHHhCCCCeEEEEcCCCCccCCC---CeeEEEe-cC---CccchhhhcCCCC
Q 030232 117 PKVVLKIESEEDMLVLQERAKSLKLPTHITIDAGRTQIAPN---SRTVMAI-LG---PVEVVDDVTGGLK 179 (181)
Q Consensus 117 ~KVvLk~~seeel~~L~~~A~~~gl~~~~i~DAG~Tei~pg---s~TvlAi-pg---P~~~id~iTg~LK 179 (181)
.-+|+..++-..=.+|++-|++.|.+++.|-++. |++|. ....+|| -| |...|+++...|+
T Consensus 211 ~miVVGg~nSsNT~rL~ei~~~~~~~t~~Ie~~~--el~~~~l~~~~~VGiTAGASTP~~li~eVi~~l~ 278 (280)
T TIGR00216 211 LMIVIGGKNSSNTTRLYEIAEEHGPPSYLIETAE--ELPEEWLKGVKVVGITAGASTPDWIIEEVIRKIK 278 (280)
T ss_pred EEEEECCCCCchHHHHHHHHHHhCCCEEEECChH--HCCHHHhCCCCEEEEEecCCCCHHHHHHHHHHHH
Confidence 4577777777778888999999999999987765 56542 2345777 55 7778888876654
No 52
>PRK14433 acylphosphatase; Provisional
Probab=29.46 E-value=59 Score=23.51 Aligned_cols=40 Identities=25% Similarity=0.338 Sum_probs=29.5
Q ss_pred HHHHHHhCCCCeEEEEcCCCCccCCCCeeEEEecCCccchhhhcCCC
Q 030232 132 LQERAKSLKLPTHITIDAGRTQIAPNSRTVMAILGPVEVVDDVTGGL 178 (181)
Q Consensus 132 L~~~A~~~gl~~~~i~DAG~Tei~pgs~TvlAipgP~~~id~iTg~L 178 (181)
++..|.+.||.-++ + -.+.|++.+++- |+.+.|+.+...|
T Consensus 20 v~~~A~~~~l~G~V-~-----N~~dG~Vei~~~-G~~~~i~~f~~~l 59 (87)
T PRK14433 20 VQKKARELGLSGYA-E-----NLSDGRVEVVAE-GPKEALERLLHWL 59 (87)
T ss_pred HHHHHHHcCCEEEE-E-----ECCCCCEEEEEE-ECHHHHHHHHHHH
Confidence 56788899997764 4 256688888886 8887888776554
No 53
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=29.39 E-value=96 Score=27.21 Aligned_cols=52 Identities=15% Similarity=0.231 Sum_probs=34.5
Q ss_pred CHHHHHHHHHHHHhCCCCeEEEE-cCCCCccCCCC---eeEE--EecCCccchhhhcC
Q 030232 125 SEEDMLVLQERAKSLKLPTHITI-DAGRTQIAPNS---RTVM--AILGPVEVVDDVTG 176 (181)
Q Consensus 125 seeel~~L~~~A~~~gl~~~~i~-DAG~Tei~pgs---~Tvl--AipgP~~~id~iTg 176 (181)
++++++++.+..++.+||+-+|. |.|.+....+. .|-= .+|.|++.|+++-.
T Consensus 27 ~q~~v~~~~~~~r~~~iP~d~i~ld~~~~~~~~~~~~~f~~d~~~FPdp~~mi~~L~~ 84 (317)
T cd06599 27 AQEALLEFIDKCREHDIPCDSFHLSSGYTSIEGGKRYVFNWNKDRFPDPAAFVAKFHE 84 (317)
T ss_pred HHHHHHHHHHHHHHcCCCeeEEEEeccccccCCCceeeeecCcccCCCHHHHHHHHHH
Confidence 48899999999999999987764 87776542222 2211 12566666666544
No 54
>cd08360 MhqB_like_C C-terminal domain of Burkholderia sp. NF100 MhqB and similar proteins; MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. This subfamily contains the C-terminal, catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=29.22 E-value=96 Score=22.81 Aligned_cols=31 Identities=3% Similarity=0.053 Sum_probs=26.8
Q ss_pred cCCCeEEEecCCHHHHHHHHHHHHhCCCCeE
Q 030232 114 CAQPKVVLKIESEEDMLVLQERAKSLKLPTH 144 (181)
Q Consensus 114 ~G~~KVvLk~~seeel~~L~~~A~~~gl~~~ 144 (181)
.|..-+.+.++|.+++.++.+++++.|++..
T Consensus 61 ~g~~hiaf~v~d~~~~~~~~~~l~~~G~~~~ 91 (134)
T cd08360 61 AGFHHAAFEVGDIDEVMLGGNHMLRAGYQTG 91 (134)
T ss_pred CcceEEEEEeCCHHHHHHHHHHHHHcCCccc
Confidence 4566799999999999999999999998753
No 55
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=29.08 E-value=85 Score=22.47 Aligned_cols=27 Identities=22% Similarity=0.145 Sum_probs=23.4
Q ss_pred CeEEEecCCHHHHHHHHHHHHhCCCCe
Q 030232 117 PKVVLKIESEEDMLVLQERAKSLKLPT 143 (181)
Q Consensus 117 ~KVvLk~~seeel~~L~~~A~~~gl~~ 143 (181)
.-+.+.++|.++++++.+++++.|...
T Consensus 70 ~~l~f~v~~~~~vd~~~~~l~~~G~~i 96 (124)
T cd09012 70 VLISLSADSREEVDELVEKALAAGGKE 96 (124)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHCCCcc
Confidence 357899999999999999999999753
No 56
>PF09413 DUF2007: Domain of unknown function (DUF2007); InterPro: IPR018551 This is a family of proteins with unknown function. ; PDB: 2HFV_A.
Probab=28.76 E-value=1.1e+02 Score=20.13 Aligned_cols=35 Identities=3% Similarity=0.051 Sum_probs=20.1
Q ss_pred EEEecCCHHHHHHHHHHHHhCCCCeEEEEcCCCCcc
Q 030232 119 VVLKIESEEDMLVLQERAKSLKLPTHITIDAGRTQI 154 (181)
Q Consensus 119 VvLk~~seeel~~L~~~A~~~gl~~~~i~DAG~Tei 154 (181)
-+..+.|+-+..-+...+++.||++++ .|.+....
T Consensus 2 ~l~~~~~~~ea~~i~~~L~~~gI~~~v-~~~~~~~~ 36 (67)
T PF09413_consen 2 KLYTAGDPIEAELIKGLLEENGIPAFV-KNEHMSGY 36 (67)
T ss_dssp EEEEE--HHHHHHHHHHHHHTT--EE---S----SS
T ss_pred EEEEcCCHHHHHHHHHHHHhCCCcEEE-ECCccchh
Confidence 456788888999999999999999764 66554333
No 57
>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=28.67 E-value=1.1e+02 Score=21.81 Aligned_cols=31 Identities=13% Similarity=0.005 Sum_probs=25.8
Q ss_pred cCCCeEEEecCCHHHHHHHHHHHHhCCCCeE
Q 030232 114 CAQPKVVLKIESEEDMLVLQERAKSLKLPTH 144 (181)
Q Consensus 114 ~G~~KVvLk~~seeel~~L~~~A~~~gl~~~ 144 (181)
.|..-+.+.++|.+++.++.+++++.|++..
T Consensus 67 ~g~~hia~~v~~~~d~~~~~~~l~~~g~~~~ 97 (128)
T cd07242 67 PGLHHLAFRAPSREAVDELYARLAKRGAEIL 97 (128)
T ss_pred cCeeEEEEEcCCHHHHHHHHHHHHHcCCeEe
Confidence 4555699999999999999999999998543
No 58
>PRK14894 glycyl-tRNA synthetase; Provisional
Probab=28.55 E-value=55 Score=31.74 Aligned_cols=44 Identities=20% Similarity=0.229 Sum_probs=34.8
Q ss_pred EecCCHHHHHHHHHHHHhCCCCeEEEEc-----CCCCccCCCCeeEEEe
Q 030232 121 LKIESEEDMLVLQERAKSLKLPTHITID-----AGRTQIAPNSRTVMAI 164 (181)
Q Consensus 121 Lk~~seeel~~L~~~A~~~gl~~~~i~D-----AG~Tei~pgs~TvlAi 164 (181)
+.+++.+.+-.=+..+...|+|+++++| .|..|+.+||+|+---
T Consensus 468 v~~DdsesIGKKyRraDeiGiPy~ITVD~~Tl~dGdkE~e~gTVTVR~R 516 (539)
T PRK14894 468 TVYDDTGAIGKLYRRQDEIGTPFCITVDFDTIGQGKDPALAGTVTVRDR 516 (539)
T ss_pred EEEcCCCCHhHHHHhhhccCCCEEEEEeccccccccchhhcCeEEEEEe
Confidence 3455555788888899999999999997 4666888899998654
No 59
>PRK06724 hypothetical protein; Provisional
Probab=28.44 E-value=90 Score=23.46 Aligned_cols=29 Identities=10% Similarity=0.037 Sum_probs=25.0
Q ss_pred CCCeEEEecCCHHHHHHHHHHHHhCCCCe
Q 030232 115 AQPKVVLKIESEEDMLVLQERAKSLKLPT 143 (181)
Q Consensus 115 G~~KVvLk~~seeel~~L~~~A~~~gl~~ 143 (181)
|..-+.+++.|.++++++.+++++.|++.
T Consensus 63 g~~h~af~v~~~~dvd~~~~~l~~~G~~~ 91 (128)
T PRK06724 63 GPRHICYQAINRKVVDEVAEFLSSTKIKI 91 (128)
T ss_pred CceeEEEecCChHHHHHHHHHHHHCCCEE
Confidence 44568899999999999999999999853
No 60
>PRK14426 acylphosphatase; Provisional
Probab=28.10 E-value=60 Score=23.65 Aligned_cols=42 Identities=29% Similarity=0.218 Sum_probs=29.8
Q ss_pred HHHHHHHhCCCCeEEEEcCCCCccCCCCeeEEEecCCccchhhhcCCCC
Q 030232 131 VLQERAKSLKLPTHITIDAGRTQIAPNSRTVMAILGPVEVVDDVTGGLK 179 (181)
Q Consensus 131 ~L~~~A~~~gl~~~~i~DAG~Tei~pgs~TvlAipgP~~~id~iTg~LK 179 (181)
-+...|+++||.-++ + -.+.|++.+++- |+.+.|+++...|+
T Consensus 22 ~v~~~A~~~gl~G~V-~-----N~~dG~Vei~~~-G~~~~i~~f~~~l~ 63 (92)
T PRK14426 22 HTQHEALKLGLTGYA-K-----NLDDGSVEVVAC-GEEEQVEKLMEWLK 63 (92)
T ss_pred HHHHHHHHhCCEEEE-E-----ECCCCcEEEEEE-eCHHHHHHHHHHHh
Confidence 356788899997664 3 245678888886 88888888766553
No 61
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=27.72 E-value=68 Score=27.98 Aligned_cols=51 Identities=14% Similarity=0.161 Sum_probs=33.1
Q ss_pred CCHHHHHHHHHHHHhCCCCeEE-EEcCCCCccCCCCeeEEE--ecCCccchhhhc
Q 030232 124 ESEEDMLVLQERAKSLKLPTHI-TIDAGRTQIAPNSRTVMA--ILGPVEVVDDVT 175 (181)
Q Consensus 124 ~seeel~~L~~~A~~~gl~~~~-i~DAG~Tei~pgs~TvlA--ipgP~~~id~iT 175 (181)
.++++++++.++.++.|||+-+ +.|-|... .-|..|.=- +|.|++.++++-
T Consensus 27 ~s~~~v~~~~~~~~~~~iP~d~i~iD~~w~~-~~g~f~~d~~~FPdp~~mi~~l~ 80 (303)
T cd06592 27 INQETVLNYAQEIIDNGFPNGQIEIDDNWET-CYGDFDFDPTKFPDPKGMIDQLH 80 (303)
T ss_pred cCHHHHHHHHHHHHHcCCCCCeEEeCCCccc-cCCccccChhhCCCHHHHHHHHH
Confidence 4799999999999999998654 45877522 123333322 256666665553
No 62
>PRK13371 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=27.55 E-value=42 Score=31.16 Aligned_cols=60 Identities=25% Similarity=0.248 Sum_probs=42.6
Q ss_pred CeEEEecCCHHHHHHHHHHHHhCCCCeEEEEcCCCCccCCC---------------------CeeEEEe-cC---Cccch
Q 030232 117 PKVVLKIESEEDMLVLQERAKSLKLPTHITIDAGRTQIAPN---------------------SRTVMAI-LG---PVEVV 171 (181)
Q Consensus 117 ~KVvLk~~seeel~~L~~~A~~~gl~~~~i~DAG~Tei~pg---------------------s~TvlAi-pg---P~~~i 171 (181)
.-+|+...+-..=..|++-|++.|.+++.|.++. ++.+. ....+|| -| |...|
T Consensus 291 ~miVVGG~nSSNT~rL~eia~~~g~~ty~Ie~~~--eL~~~~~i~h~~~~~~~~~t~~wl~~~~~~VGITAGASTP~~lI 368 (387)
T PRK13371 291 LMVVIGGYNSSNTTHLQEIAIERGIPSYHIDSPE--RILSGNSIEHKPLGKELVVTENWLPEGPVTVGITSGASTPDKVV 368 (387)
T ss_pred EEEEECCCCCccHHHHHHHHHhcCCCEEEECCHH--HcCCccccccccccchhhhhhhhhccCCCEEEEecCCCCCHHHH
Confidence 3577777766677788888888999999987765 45542 3456777 55 66778
Q ss_pred hhhcCCC
Q 030232 172 DDVTGGL 178 (181)
Q Consensus 172 d~iTg~L 178 (181)
++|...|
T Consensus 369 ~eVi~~l 375 (387)
T PRK13371 369 EDVIEKI 375 (387)
T ss_pred HHHHHHH
Confidence 8776554
No 63
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=27.45 E-value=89 Score=23.60 Aligned_cols=43 Identities=16% Similarity=0.059 Sum_probs=26.8
Q ss_pred CHHHHHHHHhcCCCeEEEecCCHH-----HHHHHHHHHHhCCCCeEEE
Q 030232 104 APKALNRWEMCAQPKVVLKIESEE-----DMLVLQERAKSLKLPTHIT 146 (181)
Q Consensus 104 ~~~~l~~W~~~G~~KVvLk~~see-----el~~L~~~A~~~gl~~~~i 146 (181)
.++.+......|++.|+---+|.| ...++.+.|++.||.++-+
T Consensus 16 ~~~d~~~la~~GfktVInlRpd~E~~~qp~~~~~~~~a~~~Gl~y~~i 63 (110)
T PF04273_consen 16 SPEDLAQLAAQGFKTVINLRPDGEEPGQPSSAEEAAAAEALGLQYVHI 63 (110)
T ss_dssp -HHHHHHHHHCT--EEEE-S-TTSTTT-T-HHCHHHHHHHCT-EEEE-
T ss_pred CHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHcCCeEEEe
Confidence 467788888899988876666633 4556888999999976543
No 64
>cd08361 PpCmtC_N N-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the N-terminal, non-catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=27.34 E-value=1.1e+02 Score=22.19 Aligned_cols=26 Identities=0% Similarity=0.027 Sum_probs=23.5
Q ss_pred eEEEecCCHHHHHHHHHHHHhCCCCe
Q 030232 118 KVVLKIESEEDMLVLQERAKSLKLPT 143 (181)
Q Consensus 118 KVvLk~~seeel~~L~~~A~~~gl~~ 143 (181)
.+.++++|.++++++.+++++.|++.
T Consensus 62 ~iaf~v~~~~dv~~~~~~l~~~G~~~ 87 (124)
T cd08361 62 ASGFELRDDDALESAATELEQYGHEV 87 (124)
T ss_pred EEEEEECCHHHHHHHHHHHHHcCCce
Confidence 47899999999999999999999864
No 65
>cd07261 Glo_EDI_BRP_like_11 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=27.00 E-value=1.3e+02 Score=20.85 Aligned_cols=29 Identities=3% Similarity=0.067 Sum_probs=24.6
Q ss_pred CCCeEEEecCCHHHHHHHHHHHHhCCCCe
Q 030232 115 AQPKVVLKIESEEDMLVLQERAKSLKLPT 143 (181)
Q Consensus 115 G~~KVvLk~~seeel~~L~~~A~~~gl~~ 143 (181)
+..-+.++++|.+++.++.+++++.|++.
T Consensus 59 ~~~~~~~~v~~~~~~~~~~~~~~~~g~~v 87 (114)
T cd07261 59 GGSELAFMVDDGAAVDALYAEWQAKGVKI 87 (114)
T ss_pred CceEEEEEcCCHHHHHHHHHHHHHCCCeE
Confidence 44568899999999999999999999754
No 66
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=27.00 E-value=51 Score=27.24 Aligned_cols=19 Identities=21% Similarity=0.301 Sum_probs=10.9
Q ss_pred HHHHHHHHHHhHhhhhccc
Q 030232 7 LSTILFGAGCLAFGYCIGK 25 (181)
Q Consensus 7 ~~~~~~~~~~~~~g~~~g~ 25 (181)
+.+++..++++++||++..
T Consensus 4 i~~i~~~~vG~~~G~~~~~ 22 (201)
T PF12072_consen 4 IIAIVALIVGIGIGYLVRK 22 (201)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444555555667777744
No 67
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=26.61 E-value=1.3e+02 Score=21.28 Aligned_cols=30 Identities=13% Similarity=0.203 Sum_probs=25.6
Q ss_pred CCCeEEEecCCHHHHHHHHHHHHhCCCCeE
Q 030232 115 AQPKVVLKIESEEDMLVLQERAKSLKLPTH 144 (181)
Q Consensus 115 G~~KVvLk~~seeel~~L~~~A~~~gl~~~ 144 (181)
+..-+.+.+++.+++.++.+++++.|++..
T Consensus 61 ~~~hiaf~v~~~~dv~~~~~~l~~~G~~~~ 90 (122)
T cd07265 61 GLDFMGFKVLDDADLEKLEARLQAYGVAVE 90 (122)
T ss_pred CeeEEEEEeCCHHHHHHHHHHHHHCCCcEE
Confidence 445688999999999999999999998743
No 68
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=26.33 E-value=2.3e+02 Score=25.01 Aligned_cols=51 Identities=22% Similarity=0.391 Sum_probs=33.4
Q ss_pred cCCCeEEEecCCHHHHHHHHHHHHhCCCCeEEEEcCCCCccCCCCeeEEEecCCcc
Q 030232 114 CAQPKVVLKIESEEDMLVLQERAKSLKLPTHITIDAGRTQIAPNSRTVMAILGPVE 169 (181)
Q Consensus 114 ~G~~KVvLk~~seeel~~L~~~A~~~gl~~~~i~DAG~Tei~pgs~TvlAipgP~~ 169 (181)
.+.+.+++-++...|= ....+|+..|||..-++| |.-.|.-++.+ |||=.+
T Consensus 154 ~~~Pd~l~ViDp~~e~-iAv~EA~klgIPVvAlvD---Tn~dpd~VD~~-IP~Ndd 204 (252)
T COG0052 154 KGLPDVLFVIDPRKEK-IAVKEANKLGIPVVALVD---TNCDPDGVDYV-IPGNDD 204 (252)
T ss_pred cCCCCEEEEeCCcHhH-HHHHHHHHcCCCEEEEec---CCCCCccCcee-ecCCCh
Confidence 3446666666544444 344578899999999999 45566666654 576443
No 69
>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity.
Probab=26.25 E-value=3.9e+02 Score=22.42 Aligned_cols=44 Identities=20% Similarity=0.198 Sum_probs=31.6
Q ss_pred CHHHHHHHHhcCCCeEEEecCCHHHHHHHHHHHHhC-CCCeEEEE
Q 030232 104 APKALNRWEMCAQPKVVLKIESEEDMLVLQERAKSL-KLPTHITI 147 (181)
Q Consensus 104 ~~~~l~~W~~~G~~KVvLk~~seeel~~L~~~A~~~-gl~~~~i~ 147 (181)
.++..+.|+..|..-+.+...|.+++.+..++|++. +-|+.++.
T Consensus 180 ~~~~~~~~~a~G~~~~~v~G~d~~~l~~al~~a~~~~~~P~~I~~ 224 (255)
T cd02012 180 TEDLAKKFEAFGWNVIEVDGHDVEEILAALEEAKKSKGKPTLIIA 224 (255)
T ss_pred chhHHHHHHHcCCeEEEECCCCHHHHHHHHHHHHHcCCCCEEEEE
Confidence 345667788889874443333999999999998865 66776665
No 70
>PF00456 Transketolase_N: Transketolase, thiamine diphosphate binding domain; InterPro: IPR005474 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 3M49_B 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 3HYL_A 3RIM_A ....
Probab=26.25 E-value=1.9e+02 Score=26.03 Aligned_cols=43 Identities=19% Similarity=0.153 Sum_probs=34.0
Q ss_pred HHHHHHHhcCCCeEEE-ecCCHHHHHHHHHHHHhC-CCCeEEEEc
Q 030232 106 KALNRWEMCAQPKVVL-KIESEEDMLVLQERAKSL-KLPTHITID 148 (181)
Q Consensus 106 ~~l~~W~~~G~~KVvL-k~~seeel~~L~~~A~~~-gl~~~~i~D 148 (181)
+..++|+..|..-+.+ ...|.+++.+..++|+.. +-|+.++.+
T Consensus 197 ~~~~k~~a~Gw~v~~v~dGhd~~~i~~A~~~a~~~~~kP~~Ii~~ 241 (332)
T PF00456_consen 197 DIAKKFEAFGWNVIEVCDGHDVEAIYAAIEEAKASKGKPTVIIAR 241 (332)
T ss_dssp HHHHHHHHTT-EEEEEEETTBHHHHHHHHHHHHHSTSS-EEEEEE
T ss_pred HHHHHHHHhhhhhcccccCcHHHHHHHHHHHHHhcCCCCceeecc
Confidence 3467899999977666 678999999999999876 889988874
No 71
>PF02829 3H: 3H domain; InterPro: IPR004173 The 3H domain is named after its three highly conserved histidine residues. The 3H domain appears to be a small molecule-binding domain, based on its occurrence with other domains []. Several proteins carrying this domain are transcriptional regulators from the biotin repressor family. The transcription regulator TM1602 from Thermotoga maritima is a DNA-binding protein thought to belong to a family of de novo NAD synthesis pathway regulators. TM1602 has an N-terminal DNA-binding domain and a C-terminal 3H regulatory domain. The N-terminal domain appears to bind to the NAD promoter region and repress the de novo NAD biosynthesis operon, while the C-terminal 3H domain may bind to nicotinamide, nicotinic acid, or other substrate/products []. The 3H domain has a 2-layer alpha/beta sandwich fold.; GO: 0005488 binding; PDB: 1J5Y_A.
Probab=26.17 E-value=76 Score=23.80 Aligned_cols=28 Identities=18% Similarity=0.150 Sum_probs=24.8
Q ss_pred cCCCeEEEecCCHHHHHHHHHHHHhCCC
Q 030232 114 CAQPKVVLKIESEEDMLVLQERAKSLKL 141 (181)
Q Consensus 114 ~G~~KVvLk~~seeel~~L~~~A~~~gl 141 (181)
+|-+-=.+.++|++.|.++.+++++.|+
T Consensus 69 ~GvH~HtI~a~~~e~l~~I~~~L~~~G~ 96 (98)
T PF02829_consen 69 GGVHYHTIEAPDEEDLDKIEEALKKKGF 96 (98)
T ss_dssp GGEEEEEEEESSHHHHHHHHHHHHHTT-
T ss_pred CCEeeEEEEECCHHHHHHHHHHHHHCCC
Confidence 6777888999999999999999999986
No 72
>PRK14422 acylphosphatase; Provisional
Probab=26.01 E-value=75 Score=23.26 Aligned_cols=40 Identities=25% Similarity=0.255 Sum_probs=29.2
Q ss_pred HHHHHHhCCCCeEEEEcCCCCccCCCCeeEEEecCCccchhhhcCCC
Q 030232 132 LQERAKSLKLPTHITIDAGRTQIAPNSRTVMAILGPVEVVDDVTGGL 178 (181)
Q Consensus 132 L~~~A~~~gl~~~~i~DAG~Tei~pgs~TvlAipgP~~~id~iTg~L 178 (181)
+...|.+.||.-++ + -.+.|++.+++- |+.+.|+.+...|
T Consensus 25 v~~~A~~~gl~G~V-~-----N~~dG~Vei~~~-G~~~~i~~f~~~l 64 (93)
T PRK14422 25 TRSRALELGLTGYA-A-----NLADGRVQVVAE-GPRAACEKLLQLL 64 (93)
T ss_pred HHHHHHHcCCEEEE-E-----ECCCCCEEEEEE-cCHHHHHHHHHHH
Confidence 55678889986554 4 256688888886 9888888876655
No 73
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=25.85 E-value=1.4e+02 Score=19.67 Aligned_cols=44 Identities=16% Similarity=0.114 Sum_probs=32.0
Q ss_pred HHHhcCCCeEEEecCCHHHHHHHHHHHHhCCCCeEEEEcCCCCc
Q 030232 110 RWEMCAQPKVVLKIESEEDMLVLQERAKSLKLPTHITIDAGRTQ 153 (181)
Q Consensus 110 ~W~~~G~~KVvLk~~seeel~~L~~~A~~~gl~~~~i~DAG~Te 153 (181)
.+.....++|++-|.+...-..+...++..|.....+.+.|..+
T Consensus 50 ~~~~~~~~~iv~~c~~g~~a~~~~~~l~~~G~~~v~~l~GG~~~ 93 (100)
T smart00450 50 RLGLDKDKPVVVYCRSGNRSAKAAWLLRELGFKNVYLLDGGYKE 93 (100)
T ss_pred HcCCCCCCeEEEEeCCCcHHHHHHHHHHHcCCCceEEecCCHHH
Confidence 33344557889899887777777888888998866677877643
No 74
>cd00858 GlyRS_anticodon GlyRS Glycyl-anticodon binding domain. GlyRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=25.71 E-value=2.7e+02 Score=20.57 Aligned_cols=48 Identities=15% Similarity=0.077 Sum_probs=33.8
Q ss_pred HhcCCCeEEEecCCHHHHHHHHHHHHhCCCCeEEEEcCCCCccCCCCeeEEEe
Q 030232 112 EMCAQPKVVLKIESEEDMLVLQERAKSLKLPTHITIDAGRTQIAPNSRTVMAI 164 (181)
Q Consensus 112 ~~~G~~KVvLk~~seeel~~L~~~A~~~gl~~~~i~DAG~Tei~pgs~TvlAi 164 (181)
+..|. ++.+-. . ..+....+.|...|+|+.+|.. -.|+..|+.++--.
T Consensus 52 R~~gi-~v~~d~-~-~sl~kqlk~A~k~g~~~~iiiG--~~e~~~~~v~lk~l 99 (121)
T cd00858 52 RELGF-SVKYDD-S-GSIGRRYARQDEIGTPFCVTVD--FDTLEDGTVTIRER 99 (121)
T ss_pred HHCCC-EEEEeC-C-CCHHHHHHHhHhcCCCEEEEEC--cCchhCCEEEEEEC
Confidence 34454 344433 3 6788888999999999999874 55777787777654
No 75
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=25.35 E-value=3.1e+02 Score=23.77 Aligned_cols=53 Identities=13% Similarity=0.114 Sum_probs=41.9
Q ss_pred CCCC-CCcchhhhHhhHHHHHHHHHHHhhCHHHHHHHHhcCCCeEEEecCCHHHHHHHHHHHHhCCCCeE
Q 030232 76 NDLK-MGKGKIAAQCSHATLGLYKKVLYRAPKALNRWEMCAQPKVVLKIESEEDMLVLQERAKSLKLPTH 144 (181)
Q Consensus 76 ~DL~-Ms~GKiAAQ~aHAal~~~~~~~~~~~~~l~~W~~~G~~KVvLk~~seeel~~L~~~A~~~gl~~~ 144 (181)
-|++ ++-+.-..|+.+.+..+|+++ |. ..++++|.+++.+..+.+.+.|+|.+
T Consensus 78 aD~~fg~y~~~~~~av~~a~r~~~~a--------------Ga--~aVkiEd~~~~~~~I~al~~agipV~ 131 (254)
T cd06557 78 ADMPFGSYQTSPEQALRNAARLMKEA--------------GA--DAVKLEGGAEVAETIRALVDAGIPVM 131 (254)
T ss_pred EeCCCCcccCCHHHHHHHHHHHHHHh--------------CC--eEEEEcCcHHHHHHHHHHHHcCCCee
Confidence 6787 667777889888888877754 54 46678788899999999999999854
No 76
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=25.32 E-value=78 Score=21.94 Aligned_cols=50 Identities=22% Similarity=0.223 Sum_probs=36.3
Q ss_pred HHhcCCCeEEEecCCHHHHHHHHHHHHhCCCCeEEEEcCCCCccCCCCeeEEEe
Q 030232 111 WEMCAQPKVVLKIESEEDMLVLQERAKSLKLPTHITIDAGRTQIAPNSRTVMAI 164 (181)
Q Consensus 111 W~~~G~~KVvLk~~seeel~~L~~~A~~~gl~~~~i~DAG~Tei~pgs~TvlAi 164 (181)
-+..|. .+.+.. +...+..-...|...|+|+.+|. |..|+..|++++--.
T Consensus 25 L~~~gi-~v~~d~-~~~~~~k~~~~a~~~g~p~~iii--G~~e~~~~~v~vk~~ 74 (94)
T PF03129_consen 25 LRKAGI-RVELDD-SDKSLGKQIKYADKLGIPFIIII--GEKELENGTVTVKDR 74 (94)
T ss_dssp HHHTTS-EEEEES-SSSTHHHHHHHHHHTTESEEEEE--EHHHHHTTEEEEEET
T ss_pred HHHCCC-EEEEEC-CCCchhHHHHHHhhcCCeEEEEE--CchhHhCCEEEEEEC
Confidence 344564 355555 55678888899999999999997 445777788777664
No 77
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=25.32 E-value=77 Score=18.95 Aligned_cols=16 Identities=31% Similarity=0.333 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHhCCCC
Q 030232 127 EDMLVLQERAKSLKLP 142 (181)
Q Consensus 127 eel~~L~~~A~~~gl~ 142 (181)
+||.+|..+|+..||.
T Consensus 3 ~EW~~Li~eA~~~Gls 18 (30)
T PF08671_consen 3 EEWVELIKEAKESGLS 18 (30)
T ss_dssp HHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHcCCC
Confidence 6899999999999973
No 78
>KOG1232 consensus Proteins containing the FAD binding domain [Energy production and conversion]
Probab=25.07 E-value=1.6e+02 Score=27.96 Aligned_cols=45 Identities=27% Similarity=0.316 Sum_probs=36.3
Q ss_pred cCCCeEEEecCCHHHHHHHHHHHHhCCCCeEEEEcCCCCccCCCCee
Q 030232 114 CAQPKVVLKIESEEDMLVLQERAKSLKLPTHITIDAGRTQIAPNSRT 160 (181)
Q Consensus 114 ~G~~KVvLk~~seeel~~L~~~A~~~gl~~~~i~DAG~Tei~pgs~T 160 (181)
.|+.|.+|+-+|-+|.-+|.+-+-++.| .+|=-.|.|-.-.||+-
T Consensus 87 rG~sklvL~Pkst~eVS~ILkYCn~~kL--AVVPQGGNTgLVGgSVP 131 (511)
T KOG1232|consen 87 RGQSKLVLKPKSTEEVSAILKYCNDRKL--AVVPQGGNTGLVGGSVP 131 (511)
T ss_pred cCCceEEecCCCHHHHHHHHHhhccccE--EEecCCCCcccccCccc
Confidence 7899999999999999999998877776 45556777777666643
No 79
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=25.05 E-value=1.4e+02 Score=21.32 Aligned_cols=37 Identities=16% Similarity=0.023 Sum_probs=27.3
Q ss_pred CCCeEEEecCCHHHHHHHHHHHHhCCCCeEEEEcCCC
Q 030232 115 AQPKVVLKIESEEDMLVLQERAKSLKLPTHITIDAGR 151 (181)
Q Consensus 115 G~~KVvLk~~seeel~~L~~~A~~~gl~~~~i~DAG~ 151 (181)
..++||+-|.+-..-..+...++..|.+...+.|.|.
T Consensus 77 ~~~~iv~yc~~g~~s~~~~~~l~~~G~~~v~~l~GG~ 113 (118)
T cd01449 77 PDKPVIVYCGSGVTACVLLLALELLGYKNVRLYDGSW 113 (118)
T ss_pred CCCCEEEECCcHHHHHHHHHHHHHcCCCCeeeeCChH
Confidence 4567888998855556667778889987666777665
No 80
>cd07258 PpCmtC_C C-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the C-terminal, catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as for other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=25.04 E-value=1.3e+02 Score=22.97 Aligned_cols=30 Identities=13% Similarity=0.059 Sum_probs=26.7
Q ss_pred cCCCeEEEecCCHHHHHHHHHHHHhCCCCe
Q 030232 114 CAQPKVVLKIESEEDMLVLQERAKSLKLPT 143 (181)
Q Consensus 114 ~G~~KVvLk~~seeel~~L~~~A~~~gl~~ 143 (181)
.|..-+.++++|.+++.++.+.+++.|++.
T Consensus 55 ~gl~Hiaf~v~~~~~v~~~~~~l~~~G~~~ 84 (141)
T cd07258 55 SHFHHVNFMVTDIDDIGKALYRIKAHDVKV 84 (141)
T ss_pred CceEEEEEECCCHHHHHHHHHHHHHCCCcE
Confidence 466789999999999999999999999864
No 81
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=24.73 E-value=1.7e+02 Score=25.52 Aligned_cols=48 Identities=15% Similarity=0.340 Sum_probs=35.6
Q ss_pred hCHHHHHHHHh-cCCCeEEEecCCHH--------------HHHHHHHHHHhCCCCeEEEEcCCC
Q 030232 103 RAPKALNRWEM-CAQPKVVLKIESEE--------------DMLVLQERAKSLKLPTHITIDAGR 151 (181)
Q Consensus 103 ~~~~~l~~W~~-~G~~KVvLk~~see--------------el~~L~~~A~~~gl~~~~i~DAG~ 151 (181)
++|+++++|.. .| .+|++-.+-.. ++.++.++..+.|+.+.++.|..+
T Consensus 109 ~~p~~v~~~~~~~g-~rivv~lD~r~g~vav~GW~e~s~~~~~~l~~~~~~~g~~~ii~TdI~~ 171 (241)
T COG0106 109 KNPDLVKELCEEYG-DRIVVALDARDGKVAVSGWQEDSGVELEELAKRLEEVGLAHILYTDISR 171 (241)
T ss_pred cCHHHHHHHHHHcC-CcEEEEEEccCCccccccccccccCCHHHHHHHHHhcCCCeEEEEeccc
Confidence 58899999954 56 67777654322 677888888889998888877665
No 82
>cd07254 Glo_EDI_BRP_like_20 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and types I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=24.57 E-value=1.4e+02 Score=20.96 Aligned_cols=29 Identities=24% Similarity=0.400 Sum_probs=24.6
Q ss_pred CCCeEEEecCCHHHHHHHHHHHHhCCCCe
Q 030232 115 AQPKVVLKIESEEDMLVLQERAKSLKLPT 143 (181)
Q Consensus 115 G~~KVvLk~~seeel~~L~~~A~~~gl~~ 143 (181)
+..-+.+.+++.+++.++.+++.+.|++.
T Consensus 58 ~~~h~~f~v~~~~dl~~~~~~l~~~G~~~ 86 (120)
T cd07254 58 GLNHLGVQVDSAEEVAEAKARAEAAGLPT 86 (120)
T ss_pred CeeEEEEEeCCHHHHHHHHHHHHHcCCeE
Confidence 44457899999999999999999999864
No 83
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=24.51 E-value=2.3e+02 Score=29.23 Aligned_cols=40 Identities=20% Similarity=0.295 Sum_probs=33.5
Q ss_pred HHHHHHHhcCCCeEEEecCCHHHHHHHHHHHHhCCCCeEEE
Q 030232 106 KALNRWEMCAQPKVVLKIESEEDMLVLQERAKSLKLPTHIT 146 (181)
Q Consensus 106 ~~l~~W~~~G~~KVvLk~~seeel~~L~~~A~~~gl~~~~i 146 (181)
+.+..|...|. +|++-++++.+.+.+.+.....+++...+
T Consensus 227 ~~~~~~~~~~~-~vii~~~s~~~~~~l~~~l~~~~~~~~~~ 266 (926)
T TIGR00580 227 EELFRWLKAGF-KITVAAESESQAERLKSLLAEHDIAAQVI 266 (926)
T ss_pred HHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHHCCCCceec
Confidence 45788888775 68889999999999999999999976654
No 84
>KOG4516 consensus NADH:ubiquinone oxidoreductase, NDUFC2/B14.5B subunit [Energy production and conversion]
Probab=24.42 E-value=43 Score=26.08 Aligned_cols=17 Identities=29% Similarity=0.503 Sum_probs=14.0
Q ss_pred HHHHHHHhHhhhhcccC
Q 030232 10 ILFGAGCLAFGYCIGKG 26 (181)
Q Consensus 10 ~~~~~~~~~~g~~~g~~ 26 (181)
+++.++.+++||++++.
T Consensus 60 ll~i~a~~~AGyy~~~~ 76 (118)
T KOG4516|consen 60 LLFIAAGVGAGYYFDQK 76 (118)
T ss_pred HHHHHHHHhhhHHHHHH
Confidence 56677778899999996
No 85
>PRK14425 acylphosphatase; Provisional
Probab=24.40 E-value=73 Score=23.36 Aligned_cols=40 Identities=18% Similarity=0.276 Sum_probs=29.0
Q ss_pred HHHHHHhCCCCeEEEEcCCCCccCCCCeeEEEecCCccchhhhcCCC
Q 030232 132 LQERAKSLKLPTHITIDAGRTQIAPNSRTVMAILGPVEVVDDVTGGL 178 (181)
Q Consensus 132 L~~~A~~~gl~~~~i~DAG~Tei~pgs~TvlAipgP~~~id~iTg~L 178 (181)
.+..|++.||.-++ +. .+.|++.+++- |+.+.|+.+...|
T Consensus 25 v~~~A~~~gl~G~V-~N-----~~dGsVei~~q-G~~~~le~f~~~l 64 (94)
T PRK14425 25 TRDEAERLGLTGWV-RN-----ESDGSVTALIA-GPDSAISAMIERF 64 (94)
T ss_pred HHHHHHHhCCEEEE-EE-----CCCCeEEEEEE-eCHHHHHHHHHHH
Confidence 55678899987654 42 55678888886 9888888776554
No 86
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=24.22 E-value=2.5e+02 Score=27.40 Aligned_cols=41 Identities=10% Similarity=0.082 Sum_probs=33.3
Q ss_pred HHHHHHHhcCCCeEEEecCCHHHHHHHHHHHHhCCCCeEEEE
Q 030232 106 KALNRWEMCAQPKVVLKIESEEDMLVLQERAKSLKLPTHITI 147 (181)
Q Consensus 106 ~~l~~W~~~G~~KVvLk~~seeel~~L~~~A~~~gl~~~~i~ 147 (181)
+.+..|...|. ++++-|++.+....|.+.....|+++..++
T Consensus 437 ~~L~~~~~~g~-~viIf~~t~~~ae~L~~~L~~~gi~~~~~h 477 (652)
T PRK05298 437 SEIRKRVAKGE-RVLVTTLTKRMAEDLTDYLKELGIKVRYLH 477 (652)
T ss_pred HHHHHHHhCCC-EEEEEeCCHHHHHHHHHHHhhcceeEEEEE
Confidence 35677877775 567779999999999999999999887764
No 87
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=23.76 E-value=1.9e+02 Score=26.03 Aligned_cols=52 Identities=13% Similarity=0.215 Sum_probs=34.3
Q ss_pred hhHHHHHHHHHHHhhCHHHHHHHHhcCCCeEEEecCCHHHHHHHHHHHHhCCCCeEEEEcC
Q 030232 89 CSHATLGLYKKVLYRAPKALNRWEMCAQPKVVLKIESEEDMLVLQERAKSLKLPTHITIDA 149 (181)
Q Consensus 89 ~aHAal~~~~~~~~~~~~~l~~W~~~G~~KVvLk~~seeel~~L~~~A~~~gl~~~~i~DA 149 (181)
.+|+.+.+...+..+. ..++-+|++....-|=..+.+++++.||++++|.|+
T Consensus 128 ~S~~v~~~l~~A~~~~---------k~~~V~VtESRP~~eG~~~ak~L~~~gI~~~~I~Ds 179 (301)
T COG1184 128 FSKTVLEVLKTAADRG---------KRFKVIVTESRPRGEGRIMAKELRQSGIPVTVIVDS 179 (301)
T ss_pred CcHHHHHHHHHhhhcC---------CceEEEEEcCCCcchHHHHHHHHHHcCCceEEEech
Confidence 4677777666652111 113445555555556678888889999999999986
No 88
>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-
Probab=23.76 E-value=1.4e+02 Score=21.34 Aligned_cols=27 Identities=11% Similarity=0.154 Sum_probs=23.2
Q ss_pred eEEEecCCHHHHHHHHHHHHhCCCCeE
Q 030232 118 KVVLKIESEEDMLVLQERAKSLKLPTH 144 (181)
Q Consensus 118 KVvLk~~seeel~~L~~~A~~~gl~~~ 144 (181)
-+.+.++|.+++.++.+++++.|++..
T Consensus 60 ~~~f~v~~~~dl~~~~~~l~~~Gv~~~ 86 (120)
T cd07252 60 YAGWEVADEAALDALAARLRAAGVAVE 86 (120)
T ss_pred EEEEEECCHHHHHHHHHHHHHcCCeEE
Confidence 467889999999999999999998643
No 89
>PRK07714 hypothetical protein; Provisional
Probab=23.62 E-value=2.4e+02 Score=20.59 Aligned_cols=42 Identities=12% Similarity=0.152 Sum_probs=32.2
Q ss_pred HHHHHHHHhcCCCeEEEecCCHH--HHHHHHHHHHhCCCCeEEE
Q 030232 105 PKALNRWEMCAQPKVVLKIESEE--DMLVLQERAKSLKLPTHIT 146 (181)
Q Consensus 105 ~~~l~~W~~~G~~KVvLk~~see--el~~L~~~A~~~gl~~~~i 146 (181)
.+.+..|.+.|..|.|+-..|-. ...++...|+..++|+..+
T Consensus 23 ~~~v~~al~~g~~~lViiA~D~s~~~~~ki~~~~~~~~vp~~~~ 66 (100)
T PRK07714 23 EELVLKEVRSGKAKLVLLSEDASVNTTKKITDKCTYYNVPMRKV 66 (100)
T ss_pred HHHHHHHHHhCCceEEEEeCCCCHHHHHHHHHHHHhcCCCEEEe
Confidence 34567787788899999887644 4678888888899998654
No 90
>TIGR00782 ccoP cytochrome c oxidase, cbb3-type, subunit III. This model describes a di-heme subunit of approximately 26 kDa of the cbb3 type copper and heme-containing cytochrome oxidase.
Probab=23.44 E-value=65 Score=27.92 Aligned_cols=23 Identities=17% Similarity=0.449 Sum_probs=18.4
Q ss_pred hHHHHHHHHHHHhHhhhhcccCC
Q 030232 5 SWLSTILFGAGCLAFGYCIGKGC 27 (181)
Q Consensus 5 ~~~~~~~~~~~~~~~g~~~g~~~ 27 (181)
.|+..+.+++++|+++|++.-+.
T Consensus 28 ~ww~~~f~~~i~~~~~y~~~yp~ 50 (285)
T TIGR00782 28 RWWLWTFYATIVWGFGYLVAYPA 50 (285)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 36777888999999999997543
No 91
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=23.31 E-value=2.8e+02 Score=19.66 Aligned_cols=37 Identities=16% Similarity=0.078 Sum_probs=27.6
Q ss_pred HHHHHHhcCCCeEEEe---cCCHHHHHHHHHHHHhCCCCeE
Q 030232 107 ALNRWEMCAQPKVVLK---IESEEDMLVLQERAKSLKLPTH 144 (181)
Q Consensus 107 ~l~~W~~~G~~KVvLk---~~seeel~~L~~~A~~~gl~~~ 144 (181)
......+.|. -|.++ +.+.++..+|.+.+++.|+...
T Consensus 78 ~~~~~l~~g~-~v~~EKP~~~~~~~~~~l~~~a~~~~~~~~ 117 (120)
T PF01408_consen 78 IAKKALEAGK-HVLVEKPLALTLEEAEELVEAAKEKGVKVM 117 (120)
T ss_dssp HHHHHHHTTS-EEEEESSSSSSHHHHHHHHHHHHHHTSCEE
T ss_pred HHHHHHHcCC-EEEEEcCCcCCHHHHHHHHHHHHHhCCEEE
Confidence 3444555676 46666 6799999999999999998754
No 92
>cd07262 Glo_EDI_BRP_like_19 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=23.28 E-value=1.3e+02 Score=21.20 Aligned_cols=26 Identities=15% Similarity=0.073 Sum_probs=22.9
Q ss_pred CeEEEecCCHHHHHHHHHHHHhCCCC
Q 030232 117 PKVVLKIESEEDMLVLQERAKSLKLP 142 (181)
Q Consensus 117 ~KVvLk~~seeel~~L~~~A~~~gl~ 142 (181)
.-+.+.++|.++++++.+++.+.|+.
T Consensus 66 ~hi~f~v~~~~~v~~~~~~~~~~g~~ 91 (123)
T cd07262 66 THVAFAAPSREAVDAFHAAALAAGGT 91 (123)
T ss_pred eEEEEECCCHHHHHHHHHHHHHcCCc
Confidence 46899999999999999999999875
No 93
>PRK12856 hypothetical protein; Provisional
Probab=22.95 E-value=1.5e+02 Score=22.47 Aligned_cols=41 Identities=17% Similarity=0.124 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHhCCCCeEEEEcCCCCccCCCCeeEEEecCC
Q 030232 126 EEDMLVLQERAKSLKLPTHITIDAGRTQIAPNSRTVMAILGP 167 (181)
Q Consensus 126 eeel~~L~~~A~~~gl~~~~i~DAG~Tei~pgs~TvlAipgP 167 (181)
++.+.++.++|++.|=++.+=.+-..+++..|..-|+|. |.
T Consensus 59 ~~A~~rm~~~A~~lGAnAVvgvr~d~~~~~~~~~~V~ay-GT 99 (103)
T PRK12856 59 DIAMDEMKELAKQKGANAIVGVDVDYEVVRDGMLMVAVS-GT 99 (103)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEEEhhHhcCcEEEEEEE-ee
Confidence 567899999999999887776666666776666666664 53
No 94
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=22.52 E-value=3.3e+02 Score=23.44 Aligned_cols=45 Identities=11% Similarity=0.218 Sum_probs=36.6
Q ss_pred hCHH-HHHHHHhcCCCeEEEecCCHHHHHHHHHHHHhCCCCeEEEE
Q 030232 103 RAPK-ALNRWEMCAQPKVVLKIESEEDMLVLQERAKSLKLPTHITI 147 (181)
Q Consensus 103 ~~~~-~l~~W~~~G~~KVvLk~~seeel~~L~~~A~~~gl~~~~i~ 147 (181)
.+|+ +++.....|..-|.+-+++.+.+.++.+..++.|+..-++.
T Consensus 71 ~~p~~~i~~fa~agad~It~H~E~~~~~~r~i~~Ik~~G~kaGv~l 116 (220)
T COG0036 71 ENPDRYIEAFAKAGADIITFHAEATEHIHRTIQLIKELGVKAGLVL 116 (220)
T ss_pred CCHHHHHHHHHHhCCCEEEEEeccCcCHHHHHHHHHHcCCeEEEEE
Confidence 3454 55555678889999999988899999999999998877764
No 95
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=22.43 E-value=1.9e+02 Score=27.15 Aligned_cols=56 Identities=27% Similarity=0.423 Sum_probs=36.0
Q ss_pred EEecCCHHHHHH-HHHHHHhCCCCeEEEEcCCCCccCCCCeeEEEecCC------ccchhhhcCCCC
Q 030232 120 VLKIESEEDMLV-LQERAKSLKLPTHITIDAGRTQIAPNSRTVMAILGP------VEVVDDVTGGLK 179 (181)
Q Consensus 120 vLk~~seeel~~-L~~~A~~~gl~~~~i~DAG~Tei~pgs~TvlAipgP------~~~id~iTg~LK 179 (181)
.|-| |.+.+-+ +.++.+.. |-..|+.--.|++||.-.||||. || .+.|.++||.=.
T Consensus 94 ALAV-DR~~Fs~~vT~~l~~h--pli~vireEvt~iP~dg~~vIAT-GPLTs~~La~~i~~ltG~d~ 156 (439)
T COG1206 94 ALAV-DRDGFSQAVTEKLENH--PLIEVIREEVTEIPPDGITVIAT-GPLTSDALAEKIKELTGEDY 156 (439)
T ss_pred eeee-cHhHHHHHHHHHHhcC--CCEEEEccccccCCCCCcEEEec-CCCCCHHHHHHHHHhhCCce
Confidence 3455 5556644 44444444 33455555679999888999998 66 257888888643
No 96
>cd07239 BphC5-RK37_C_like C-terminal, catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacterium Rhodococcus rhodochrous K37 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the C-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dio
Probab=22.31 E-value=1.4e+02 Score=22.62 Aligned_cols=29 Identities=10% Similarity=0.103 Sum_probs=25.1
Q ss_pred CCCeEEEecCCHHHHHHHHHHHHhCCCCe
Q 030232 115 AQPKVVLKIESEEDMLVLQERAKSLKLPT 143 (181)
Q Consensus 115 G~~KVvLk~~seeel~~L~~~A~~~gl~~ 143 (181)
+..-+.+.++|.+++.++.+++++.|++.
T Consensus 59 ~~~hiaf~v~d~~~l~~~~~~l~~~Gi~~ 87 (144)
T cd07239 59 SLNHVAFEMPSIDEVMRGIGRMIDKGIDI 87 (144)
T ss_pred ceEEEEEECCCHHHHHHHHHHHHHcCCce
Confidence 44458899999999999999999999974
No 97
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=22.14 E-value=91 Score=25.47 Aligned_cols=22 Identities=23% Similarity=0.353 Sum_probs=19.1
Q ss_pred CHHHHHHHHHHHHhCCCCeEEEEc
Q 030232 125 SEEDMLVLQERAKSLKLPTHITID 148 (181)
Q Consensus 125 seeel~~L~~~A~~~gl~~~~i~D 148 (181)
+.++|.+|.++|+++|| .+|.|
T Consensus 50 t~~d~~~Lv~~~h~~gi--~VilD 71 (316)
T PF00128_consen 50 TMEDFKELVDAAHKRGI--KVILD 71 (316)
T ss_dssp HHHHHHHHHHHHHHTTC--EEEEE
T ss_pred hhhhhhhhhhccccccc--eEEEe
Confidence 57899999999999998 56677
No 98
>cd08348 BphC2-C3-RGP6_C_like The single-domain 2,3-dihydroxybiphenyl 1,2-dioxygenases (BphC, EC 1.13.11.39) from Rhodococcus globerulus P6, BphC2-RGP6 and BphC3-RGP6, and similar proteins. This subfamily contains Rhodococcus globerulus P6 BphC2-RGP6 and BphC3-RGP6, and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, yielding 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid. This is the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Most type I extradiol dioxygenases are activated by Fe(II). Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC2-RGP6 and BphC3-RGP6 are
Probab=21.96 E-value=1.7e+02 Score=21.05 Aligned_cols=29 Identities=17% Similarity=0.337 Sum_probs=24.6
Q ss_pred CCCeEEEecCCHHHHHHHHHHHHhCCCCe
Q 030232 115 AQPKVVLKIESEEDMLVLQERAKSLKLPT 143 (181)
Q Consensus 115 G~~KVvLk~~seeel~~L~~~A~~~gl~~ 143 (181)
+..-+.+.++|.+++.++.+++.+.|++.
T Consensus 65 ~~~h~~f~v~~~~~v~~~~~~l~~~G~~~ 93 (134)
T cd08348 65 GLNHIAFEVDSLDDLRDLYERLRAAGITP 93 (134)
T ss_pred CceEEEEEeCCHHHHHHHHHHHHHCCCCc
Confidence 44568899999999999999999999863
No 99
>PF02769 AIRS_C: AIR synthase related protein, C-terminal domain; InterPro: IPR010918 This entry includes Hydrogen expression/formation protein, HypE, which may be involved in the maturation of NifE hydrogenase; AIR synthase and FGAM synthase, which are involved in de novo purine biosynthesis; and selenide, water dikinase, an enzyme which synthesizes selenophosphate from selenide and ATP.; PDB: 2Z1F_A 2Z1E_A 2YXZ_D 2V9Y_A 2HS0_A 2HRU_A 2HS3_A 3D54_A 1VK3_A 2HS4_A ....
Probab=21.76 E-value=2.5e+02 Score=20.92 Aligned_cols=38 Identities=11% Similarity=0.179 Sum_probs=27.7
Q ss_pred HHHHHhcCCCeEEEecCCHHHHHHHHHHHHhCCCC-eEEE
Q 030232 108 LNRWEMCAQPKVVLKIESEEDMLVLQERAKSLKLP-THIT 146 (181)
Q Consensus 108 l~~W~~~G~~KVvLk~~seeel~~L~~~A~~~gl~-~~~i 146 (181)
.+.|...++--.++-++.++. .++.+.+++.|+| +++|
T Consensus 101 ~~~l~~~~~g~~l~~v~~~~~-~~~~~~~~~~g~~~~~~I 139 (153)
T PF02769_consen 101 LEMLFSESEGRLLVAVPPEDA-EEFLAALKKAGIPNATVI 139 (153)
T ss_dssp HHHHHHSSSTEEEEEEEGGGH-HHHHHHHHHTTCTTEEEE
T ss_pred hhhhccCCCCCEEEEEcHHHH-HHHHHHHHhCCCCCEEEE
Confidence 456666666677777765554 8899999999995 6665
No 100
>PRK14436 acylphosphatase; Provisional
Probab=21.75 E-value=98 Score=22.52 Aligned_cols=40 Identities=20% Similarity=0.237 Sum_probs=28.8
Q ss_pred HHHHHHhCCCCeEEEEcCCCCccCCCCeeEEEecCCccchhhhcCCC
Q 030232 132 LQERAKSLKLPTHITIDAGRTQIAPNSRTVMAILGPVEVVDDVTGGL 178 (181)
Q Consensus 132 L~~~A~~~gl~~~~i~DAG~Tei~pgs~TvlAipgP~~~id~iTg~L 178 (181)
.++.|.+.||.-++.- .+.|++.+++- |+.+.|+.+...|
T Consensus 23 v~~~A~~l~l~G~V~N------~~dG~Vei~~q-G~~~~i~~f~~~l 62 (91)
T PRK14436 23 MQREARKLGVNGWVRN------LPDGSVEAVLE-GDEERVEALIGWA 62 (91)
T ss_pred HHHHHHHcCCEEEEEE------CCCCcEEEEEE-cCHHHHHHHHHHH
Confidence 5678889998766532 45678888886 8888888776544
No 101
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=21.56 E-value=1.9e+02 Score=18.15 Aligned_cols=24 Identities=8% Similarity=0.113 Sum_probs=19.8
Q ss_pred EEEecCCHHHHHHHHHHHHhCCCC
Q 030232 119 VVLKIESEEDMLVLQERAKSLKLP 142 (181)
Q Consensus 119 VvLk~~seeel~~L~~~A~~~gl~ 142 (181)
+.+.+.+.+++.++.+..++.|..
T Consensus 47 i~v~~~~~~~l~~l~~~l~~~g~~ 70 (73)
T cd04886 47 LTLETRGAEHIEEIIAALREAGYD 70 (73)
T ss_pred EEEEeCCHHHHHHHHHHHHHcCCE
Confidence 556778889999999999988853
No 102
>PRK14440 acylphosphatase; Provisional
Probab=21.37 E-value=1.1e+02 Score=22.29 Aligned_cols=40 Identities=20% Similarity=0.174 Sum_probs=28.1
Q ss_pred HHHHHHhCCCCeEEEEcCCCCccCCCCeeEEEecCCccchhhhcCCC
Q 030232 132 LQERAKSLKLPTHITIDAGRTQIAPNSRTVMAILGPVEVVDDVTGGL 178 (181)
Q Consensus 132 L~~~A~~~gl~~~~i~DAG~Tei~pgs~TvlAipgP~~~id~iTg~L 178 (181)
+.+.|.+.||.-+ |+ -.+.|++.+++- ||.+.|+.+...|
T Consensus 22 v~~~A~~~gl~G~-V~-----N~~dG~Vei~~~-G~~~~v~~f~~~l 61 (90)
T PRK14440 22 VQIHAIRLGIKGY-AK-----NLPDGSVEVVAE-GYEEALSKLLERI 61 (90)
T ss_pred HHHHHHHcCCEEE-EE-----ECCCCCEEEEEE-cCHHHHHHHHHHH
Confidence 5678889998665 44 255678888875 8888787765444
No 103
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=20.99 E-value=2.8e+02 Score=18.84 Aligned_cols=30 Identities=13% Similarity=0.221 Sum_probs=24.7
Q ss_pred CeEEEecCCHHHHHHHHHHHHhCCCCeEEE
Q 030232 117 PKVVLKIESEEDMLVLQERAKSLKLPTHIT 146 (181)
Q Consensus 117 ~KVvLk~~seeel~~L~~~A~~~gl~~~~i 146 (181)
.+.++-.+|-.+..+..+.+++.|+++.++
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi~~~li 31 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGIPVRLI 31 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCcEEEe
Confidence 456677888888999999999999988776
No 104
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=20.94 E-value=4.2e+02 Score=23.11 Aligned_cols=53 Identities=17% Similarity=0.152 Sum_probs=38.9
Q ss_pred CCCC-CCcchhhhHhhHHHHHHHHHHHhhCHHHHHHHHhcCCCeEEEecCCHHHHHHHHHHHHhCCCCeE
Q 030232 76 NDLK-MGKGKIAAQCSHATLGLYKKVLYRAPKALNRWEMCAQPKVVLKIESEEDMLVLQERAKSLKLPTH 144 (181)
Q Consensus 76 ~DL~-Ms~GKiAAQ~aHAal~~~~~~~~~~~~~l~~W~~~G~~KVvLk~~seeel~~L~~~A~~~gl~~~ 144 (181)
-|++ ++-+.-..|+.+-+...|++ .|. ..+++++.+++.+..+.+.+.|||.+
T Consensus 81 aD~pfg~y~~~~~~av~~a~r~~~~--------------aGa--~aVkiEdg~~~~~~I~al~~agIpV~ 134 (264)
T PRK00311 81 ADMPFGSYQASPEQALRNAGRLMKE--------------AGA--HAVKLEGGEEVAETIKRLVERGIPVM 134 (264)
T ss_pred EeCCCCCccCCHHHHHHHHHHHHHH--------------hCC--eEEEEcCcHHHHHHHHHHHHCCCCEe
Confidence 6777 55667777777777666664 354 46677787889999999999999864
No 105
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=20.84 E-value=2.5e+02 Score=22.02 Aligned_cols=40 Identities=13% Similarity=0.056 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHhCCCCeEEEEcCCCCccCCCCeeEEEecC
Q 030232 127 EDMLVLQERAKSLKLPTHITIDAGRTQIAPNSRTVMAILG 166 (181)
Q Consensus 127 eel~~L~~~A~~~gl~~~~i~DAG~Tei~pgs~TvlAipg 166 (181)
+++.++.+.|++.|++...|.+.....+.+-.-.++-+|.
T Consensus 115 ~~~i~~~~~ak~~Ga~vI~IT~~~~s~La~~aD~~l~~~~ 154 (177)
T cd05006 115 PNVLKALEAAKERGMKTIALTGRDGGKLLELADIEIHVPS 154 (177)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCCEEEEeCC
Confidence 5788999999999999999988766667666656666543
No 106
>PF06983 3-dmu-9_3-mt: 3-demethylubiquinone-9 3-methyltransferase; PDB: 1U7I_A 1TSJ_A 1U69_D 3L20_B 3OMS_A.
Probab=20.64 E-value=1.4e+02 Score=22.47 Aligned_cols=25 Identities=8% Similarity=0.128 Sum_probs=22.0
Q ss_pred CeEEEecCCHHHHHHHHHHHHhCCC
Q 030232 117 PKVVLKIESEEDMLVLQERAKSLKL 141 (181)
Q Consensus 117 ~KVvLk~~seeel~~L~~~A~~~gl 141 (181)
-.++|.++|++|+.++.+++.+.|-
T Consensus 73 ~sl~i~~~~~ee~~~~f~~Ls~gG~ 97 (116)
T PF06983_consen 73 ISLCIECDDEEEIDRIFDKLSEGGQ 97 (116)
T ss_dssp EEEEEEESSHHHHHHHHHHHHTTTE
T ss_pred EEEEEEcCCHHHHHHHHHHHHcCCC
Confidence 4688999999999999999988763
No 107
>cd07237 BphC1-RGP6_C_like C-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the C-terminal, catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its C-terminal repeat is represented in thi
Probab=20.63 E-value=1.6e+02 Score=22.52 Aligned_cols=30 Identities=17% Similarity=0.254 Sum_probs=25.7
Q ss_pred cCCCeEEEecCCHHHHHHHHHHHHhCCCCe
Q 030232 114 CAQPKVVLKIESEEDMLVLQERAKSLKLPT 143 (181)
Q Consensus 114 ~G~~KVvLk~~seeel~~L~~~A~~~gl~~ 143 (181)
.+..-+.+.++|.+++.++.+++++.|++.
T Consensus 72 ~g~~Hiaf~V~d~~~l~~~~~~L~~~G~~v 101 (154)
T cd07237 72 KRIHHLMLEVTSLDDVGRAYDRVRARGIPI 101 (154)
T ss_pred ceeEEEEEEcCCHHHHHHHHHHHHHcCCce
Confidence 345569999999999999999999999864
No 108
>PRK14438 acylphosphatase; Provisional
Probab=20.60 E-value=94 Score=22.54 Aligned_cols=40 Identities=15% Similarity=0.059 Sum_probs=28.4
Q ss_pred HHHHHHhCCCCeEEEEcCCCCccCCCCeeEEEecCCccchhhhcCCC
Q 030232 132 LQERAKSLKLPTHITIDAGRTQIAPNSRTVMAILGPVEVVDDVTGGL 178 (181)
Q Consensus 132 L~~~A~~~gl~~~~i~DAG~Tei~pgs~TvlAipgP~~~id~iTg~L 178 (181)
....|.+.||.-++ + -.+.|++.+++- |+.+.|+.+...|
T Consensus 22 ~~~~A~~~gl~G~V-~-----N~~dG~Vei~~q-G~~~~i~~f~~~l 61 (91)
T PRK14438 22 TQQTAQRLNVSGWV-K-----NLPNGSVQGCFE-GEETDVAALIDWC 61 (91)
T ss_pred HHHHHHHcCCEEEE-E-----ECCCCEEEEEEE-ECHHHHHHHHHHH
Confidence 45678889997665 3 245677777775 8888888776655
No 109
>cd09013 BphC-JF8_N_like N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C
Probab=20.57 E-value=1.7e+02 Score=20.78 Aligned_cols=29 Identities=10% Similarity=0.013 Sum_probs=25.2
Q ss_pred CCCeEEEecCCHHHHHHHHHHHHhCCCCe
Q 030232 115 AQPKVVLKIESEEDMLVLQERAKSLKLPT 143 (181)
Q Consensus 115 G~~KVvLk~~seeel~~L~~~A~~~gl~~ 143 (181)
|..-+.+.++|.+++.++.+++++.|++.
T Consensus 62 ~~~h~af~v~~~~~v~~~~~~l~~~G~~~ 90 (121)
T cd09013 62 GLGHIAWRASSPEALERRVAALEASGLGI 90 (121)
T ss_pred ceEEEEEEcCCHHHHHHHHHHHHHcCCcc
Confidence 44568899999999999999999999874
No 110
>PRK05601 DNA polymerase III subunit epsilon; Validated
Probab=20.48 E-value=80 Score=29.29 Aligned_cols=64 Identities=23% Similarity=0.249 Sum_probs=45.3
Q ss_pred EEEEEeCCCCCCcchhhhHhhHHHHHHHHHHHhhCHHHHHHHHhcCCCeEEEecCCHHHHHHHHHHHHhCCCCeEEEEcC
Q 030232 70 MVLVVRNDLKMGKGKIAAQCSHATLGLYKKVLYRAPKALNRWEMCAQPKVVLKIESEEDMLVLQERAKSLKLPTHITIDA 149 (181)
Q Consensus 70 mvlvVR~DL~Ms~GKiAAQ~aHAal~~~~~~~~~~~~~l~~W~~~G~~KVvLk~~seeel~~L~~~A~~~gl~~~~i~DA 149 (181)
|-+||-.+..|....++.++.||-+....++ ..+.-+| -|+....+.-=.-+|+..||| ++.|+
T Consensus 298 m~v~~~~e~~~~~d~li~~~~~agL~y~~~~-------------~r~tslv-v~n~~~~~~gk~~~a~~~gip--l~~d~ 361 (377)
T PRK05601 298 MEVVVAPEITMDPDIIIQAIVRAGLAYSEKL-------------TRQTSVV-VCNQTRDLDGKAMHAQRKGIP--LLSDV 361 (377)
T ss_pred cEEEEeCCccCCHHHHHHHHHHccchhhhcc-------------ccceeEE-EeCCCCCccchhhhhhhcCCC--ccCHH
Confidence 7899999999999999999999988866665 2333333 365555555545566777877 34454
No 111
>PRK12855 hypothetical protein; Provisional
Probab=20.47 E-value=1.9e+02 Score=21.91 Aligned_cols=41 Identities=15% Similarity=0.124 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHhCCCCeEEEEcCCCCccCCCCeeEEEecCC
Q 030232 126 EEDMLVLQERAKSLKLPTHITIDAGRTQIAPNSRTVMAILGP 167 (181)
Q Consensus 126 eeel~~L~~~A~~~gl~~~~i~DAG~Tei~pgs~TvlAipgP 167 (181)
++.+.++.++|++.|=++.+=.+-..+++..|..-|+|. |.
T Consensus 59 ~~A~~rm~~~A~~lGAnAVVgvr~d~~~i~~~~~~V~ay-GT 99 (103)
T PRK12855 59 DIAMEEMKTLARQKNANAIVGIDVDYEVVREGMLMVAVS-GT 99 (103)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEEEhhHhcCcEEEEEEE-ee
Confidence 567899999999999887766665566676665666664 53
No 112
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=20.34 E-value=2.7e+02 Score=21.59 Aligned_cols=40 Identities=15% Similarity=0.093 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHhCCCCeEEEEcCCCCccCCCCeeEEEec
Q 030232 126 EEDMLVLQERAKSLKLPTHITIDAGRTQIAPNSRTVMAIL 165 (181)
Q Consensus 126 eeel~~L~~~A~~~gl~~~~i~DAG~Tei~pgs~TvlAip 165 (181)
-+++.++.+.|+++|++...+.+.....+..-.-.++-+|
T Consensus 92 t~~~~~~~~~a~~~g~~ii~iT~~~~s~l~~~ad~~l~~~ 131 (154)
T TIGR00441 92 SKNVLKAIEAAKDKGMKTITLAGKDGGKMAGLADIELRVP 131 (154)
T ss_pred CHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCCEEEEeC
Confidence 3678899999999999999998877777766554455554
No 113
>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ
Probab=20.21 E-value=1.7e+02 Score=20.54 Aligned_cols=29 Identities=28% Similarity=0.394 Sum_probs=24.7
Q ss_pred CCCeEEEecCCHHHHHHHHHHHHhCCCCe
Q 030232 115 AQPKVVLKIESEEDMLVLQERAKSLKLPT 143 (181)
Q Consensus 115 G~~KVvLk~~seeel~~L~~~A~~~gl~~ 143 (181)
+..-+.+.+.+.++++++.+++++.|+..
T Consensus 60 ~~~hi~~~v~~~~dv~~~~~~l~~~g~~~ 88 (121)
T cd07266 60 GLGHIAFRVRSEEDLDKAEAFFQELGLPT 88 (121)
T ss_pred ceeEEEEECCCHHHHHHHHHHHHHcCCCc
Confidence 44557889999999999999999999864
No 114
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=20.20 E-value=96 Score=21.42 Aligned_cols=21 Identities=29% Similarity=0.461 Sum_probs=15.9
Q ss_pred chhHHHHHHHHHHHhHhhhhc
Q 030232 3 DLSWLSTILFGAGCLAFGYCI 23 (181)
Q Consensus 3 ~~~~~~~~~~~~~~~~~g~~~ 23 (181)
+..|+-=+++|+++.+++|++
T Consensus 49 n~kW~~r~iiGaiI~~i~~~i 69 (71)
T PF10779_consen 49 NTKWIWRTIIGAIITAIIYLI 69 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456777788888888877765
No 115
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=20.15 E-value=3.1e+02 Score=27.95 Aligned_cols=34 Identities=21% Similarity=0.313 Sum_probs=28.8
Q ss_pred HhcCCCeEEEecCCHHHHHHHHHHHHhCCCCeEEE
Q 030232 112 EMCAQPKVVLKIESEEDMLVLQERAKSLKLPTHIT 146 (181)
Q Consensus 112 ~~~G~~KVvLk~~seeel~~L~~~A~~~gl~~~~i 146 (181)
...|++ |.+.+.|.++=+.|.+..++.||||.+.
T Consensus 424 ~~~GrP-VLVgt~sI~~SE~ls~~L~~~gI~h~vL 457 (764)
T PRK12326 424 HETGQP-VLVGTHDVAESEELAERLRAAGVPAVVL 457 (764)
T ss_pred HHcCCC-EEEEeCCHHHHHHHHHHHHhCCCcceee
Confidence 347887 6778889999999999999999998765
No 116
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=20.14 E-value=69 Score=30.97 Aligned_cols=48 Identities=21% Similarity=0.397 Sum_probs=36.6
Q ss_pred CCCCCCcchhhhHh-----------hHHHHHHHHHHHhhCHHHHHHHHhcCCCeEEEec
Q 030232 76 NDLKMGKGKIAAQC-----------SHATLGLYKKVLYRAPKALNRWEMCAQPKVVLKI 123 (181)
Q Consensus 76 ~DL~Ms~GKiAAQ~-----------aHAal~~~~~~~~~~~~~l~~W~~~G~~KVvLk~ 123 (181)
+.|+..++-.+|-. .|||+.+|..+..-+|..++.|..-||+=-+++-
T Consensus 355 RALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~M 413 (559)
T KOG1155|consen 355 RALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKM 413 (559)
T ss_pred HHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcc
Confidence 44666677776655 6899999999999999999999887775444433
No 117
>PRK14427 acylphosphatase; Provisional
Probab=20.13 E-value=86 Score=22.96 Aligned_cols=41 Identities=22% Similarity=0.255 Sum_probs=29.1
Q ss_pred HHHHHHhCCCCeEEEEcCCCCccCCCCeeEEEecCCccchhhhcCCCC
Q 030232 132 LQERAKSLKLPTHITIDAGRTQIAPNSRTVMAILGPVEVVDDVTGGLK 179 (181)
Q Consensus 132 L~~~A~~~gl~~~~i~DAG~Tei~pgs~TvlAipgP~~~id~iTg~LK 179 (181)
+...|+++||.-++ + -.+.|++.+++- |+.+.|+.+...|+
T Consensus 25 v~~~A~~lgl~G~V-~-----N~~dGsVei~~q-G~~~~i~~f~~~l~ 65 (94)
T PRK14427 25 TMRKAEELGLTGTV-R-----NLDDGSVALVAE-GTGEQVEKLLDWLN 65 (94)
T ss_pred HHHHHHHcCCEEEE-E-----ECCCCeEEEEEE-ECHHHHHHHHHHHh
Confidence 45678899997655 3 255678888875 88888887765543
Done!