Query 030232
Match_columns 181
No_of_seqs 164 out of 612
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 17:04:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030232.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030232hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1rlk_A Hypothetical protein TA 100.0 6.6E-48 2.3E-52 295.6 14.0 116 66-181 1-117 (117)
2 1wn2_A Peptidyl-tRNA hydrolase 100.0 1.3E-47 4.5E-52 295.8 13.9 116 66-181 5-121 (121)
3 1rzw_A Protein AF2095(GR4); be 100.0 1.2E-47 4E-52 297.3 12.2 113 66-181 1-114 (123)
4 2zv3_A PTH, peptidyl-tRNA hydr 100.0 1.6E-47 5.4E-52 292.7 12.7 114 68-181 1-115 (115)
5 1q7s_A BIT1, protein CGI-147; 100.0 1.1E-47 3.9E-52 294.3 11.9 116 66-181 1-117 (117)
6 1xty_A PTH, peptidyl-tRNA hydr 100.0 4.5E-47 1.5E-51 292.1 13.7 115 67-181 1-120 (120)
7 2gax_A Hypothetical protein AT 99.9 4.2E-25 1.5E-29 172.8 3.5 112 67-181 3-134 (135)
8 3j21_Z 50S ribosomal protein L 78.3 15 0.00051 25.8 8.3 67 106-173 21-96 (99)
9 1xbi_A 50S ribosomal protein L 57.5 4.1 0.00014 30.0 1.5 67 106-176 35-113 (120)
10 1w41_A 50S ribosomal protein L 52.2 57 0.0019 22.7 8.1 41 106-146 22-64 (101)
11 3e5d_A Putative glyoxalase I; 50.8 26 0.00089 23.4 4.8 31 114-144 70-100 (127)
12 2ki0_A DS119; beta-alpha-beta, 49.3 6.3 0.00022 23.3 1.1 24 123-146 11-34 (36)
13 3cpq_A 50S ribosomal protein L 46.9 75 0.0026 22.6 7.9 42 105-146 26-69 (110)
14 1uxy_A MURB, uridine diphospho 45.2 16 0.00055 31.4 3.5 35 111-145 9-43 (340)
15 2xzm_U Ribosomal protein L7AE 45.0 54 0.0018 24.3 6.0 67 113-179 37-125 (126)
16 1rlg_A 50S ribosomal protein L 41.0 29 0.00099 25.1 3.9 60 105-168 32-103 (119)
17 1twu_A Hypothetical protein YY 40.3 50 0.0017 22.8 5.1 29 115-143 77-105 (139)
18 3tx1_A UDP-N-acetylenolpyruvoy 39.0 22 0.00074 30.4 3.4 40 111-151 49-88 (322)
19 3v7q_A Probable ribosomal prot 37.6 1E+02 0.0035 21.5 6.6 42 105-146 24-67 (101)
20 1v95_A Nuclear receptor coacti 36.7 23 0.00078 26.8 2.8 54 108-164 28-82 (130)
21 1xqa_A Glyoxalase/bleomycin re 35.1 55 0.0019 21.5 4.4 30 114-143 59-88 (113)
22 2kjz_A ATC0852; protein of unk 34.3 53 0.0018 23.3 4.4 30 114-143 85-114 (144)
23 3lto_A Mevalonate diphosphate 33.7 46 0.0016 28.4 4.6 47 116-171 250-297 (323)
24 1mli_A Muconolactone isomerase 32.8 45 0.0016 24.1 3.7 74 70-148 1-78 (96)
25 2l82_A Designed protein OR32; 32.5 1.5E+02 0.0051 22.4 6.7 44 106-149 67-112 (162)
26 2a4x_A Mitomycin-binding prote 32.1 63 0.0021 22.2 4.4 30 115-144 71-100 (138)
27 2rbb_A Glyoxalase/bleomycin re 31.2 52 0.0018 22.8 3.8 25 118-142 78-102 (141)
28 3dnf_A ISPH, LYTB, 4-hydroxy-3 30.2 17 0.00057 31.3 1.2 59 118-178 213-278 (297)
29 1hsk_A UDP-N-acetylenolpyruvoy 30.2 33 0.0011 29.0 3.1 40 111-151 43-82 (326)
30 3oaj_A Putative ring-cleaving 28.9 1E+02 0.0035 25.6 5.9 63 118-180 218-289 (335)
31 2ba3_A NIKA; dimer, bacterial 28.5 61 0.0021 19.6 3.4 25 117-142 16-40 (51)
32 3rhe_A NAD-dependent benzaldeh 28.0 75 0.0026 22.7 4.4 29 115-143 67-95 (148)
33 3i99_A UDP-N-acetylenolpyruvoy 27.9 15 0.00051 32.0 0.5 41 109-150 23-63 (357)
34 3iz5_f 60S ribosomal protein L 27.2 1.3E+02 0.0044 21.7 5.5 70 105-175 31-109 (112)
35 3rja_A Carbohydrate oxidase; p 26.9 86 0.003 27.8 5.3 37 114-151 34-70 (473)
36 3ct8_A Protein BH2160, putativ 26.7 73 0.0025 22.5 4.0 30 114-143 85-114 (146)
37 3on1_A BH2414 protein; structu 25.6 1.7E+02 0.0057 20.2 6.0 63 105-169 23-93 (101)
38 4bby_A Alkyldihydroxyacetoneph 24.9 89 0.003 28.9 5.2 40 105-144 192-233 (658)
39 3szu_A ISPH, 4-hydroxy-3-methy 24.1 21 0.0007 31.2 0.6 60 117-178 228-294 (328)
40 2rk0_A Glyoxalase/bleomycin re 24.0 67 0.0023 22.0 3.3 29 115-143 72-100 (136)
41 3sk2_A EHPR; antibiotic resist 23.6 92 0.0031 21.2 4.0 29 115-143 72-103 (132)
42 2aif_A Ribosomal protein L7A; 23.4 97 0.0033 22.9 4.3 44 105-148 46-92 (135)
43 4gqr_A Pancreatic alpha-amylas 23.2 66 0.0022 27.2 3.7 29 119-149 69-97 (496)
44 3r4q_A Lactoylglutathione lyas 21.5 74 0.0025 22.8 3.2 30 115-144 76-105 (160)
45 3u5e_c L32, RP73, YL38, 60S ri 20.8 2.2E+02 0.0075 19.8 6.8 68 105-173 27-103 (105)
46 2c2n_A Malonyl COA-acyl carrie 20.3 45 0.0015 28.2 2.0 93 78-178 114-216 (339)
No 1
>1rlk_A Hypothetical protein TA0108; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; HET: SO4; 1.95A {Thermoplasma acidophilum} SCOP: c.131.1.1
Probab=100.00 E-value=6.6e-48 Score=295.62 Aligned_cols=116 Identities=34% Similarity=0.503 Sum_probs=113.2
Q ss_pred CCeEEEEEEeCCCCCCcchhhhHhhHHHHHHHHHHHhhCHHHHHHHHhcCCCeEEEecCCHHHHHHHHHHHHhCCCCeEE
Q 030232 66 DDFKMVLVVRNDLKMGKGKIAAQCSHATLGLYKKVLYRAPKALNRWEMCAQPKVVLKIESEEDMLVLQERAKSLKLPTHI 145 (181)
Q Consensus 66 ~~~kmvlvVR~DL~Ms~GKiAAQ~aHAal~~~~~~~~~~~~~l~~W~~~G~~KVvLk~~seeel~~L~~~A~~~gl~~~~ 145 (181)
+++|||||||+||+||+||+||||||||+++|.++++++++++++|+.+||+||||+++|+++|++|.++|++.|||+++
T Consensus 1 ~e~k~vivvr~dL~m~~GKiaAQ~~HAa~~~~~~~~~~~~~~~~~W~~~g~~kiVlk~~~e~~l~~l~~~a~~~gl~~~~ 80 (117)
T 1rlk_A 1 MVKKMVIAVRKDLDMGKGKIAAQVAHAAVTCAIRSMKINRDVFNEWYDEGQRKIVVKVNDLDEIMEIKRMADSMGIVNEI 80 (117)
T ss_dssp -CEEEEEEEESTTCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCEEE
T ss_pred CCcEEEEEEECCCCcCHhHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHCCCeEEEEecCCHHHHHHHHHHHHHCCCCEEE
Confidence 47999999999999999999999999999999999888999999999999999999999999999999999999999999
Q ss_pred EEcCCCCccCCCCeeEEEe-cCCccchhhhcCCCCCC
Q 030232 146 TIDAGRTQIAPNSRTVMAI-LGPVEVVDDVTGGLKLL 181 (181)
Q Consensus 146 i~DAG~Tei~pgs~TvlAi-pgP~~~id~iTg~LKLl 181 (181)
|+|||||||||||.||+|| |||.+.||+||||||||
T Consensus 81 v~DAG~Tei~~gt~TvlaigP~~~~~vd~itg~lkL~ 117 (117)
T 1rlk_A 81 VQDRGYTQVEPGTITCIGLGPDEEEKLDKITGKYKLL 117 (117)
T ss_dssp EECCCSSSSSCCCEEEEEEEEEEHHHHHHHHTTSCBC
T ss_pred EEeCCccCcCCCCEEEEEeCcCCHHHHHHHcCCCCCC
Confidence 9999999999999999999 99999999999999997
No 2
>1wn2_A Peptidyl-tRNA hydrolase; riken structural genomics/proteomics initiative, structural genomics; 1.20A {Pyrococcus horikoshii} PDB: 2d3k_A
Probab=100.00 E-value=1.3e-47 Score=295.76 Aligned_cols=116 Identities=42% Similarity=0.622 Sum_probs=113.5
Q ss_pred CCeEEEEEEeCCCCCCcchhhhHhhHHHHHHHHHHHhhCHHHHHHHHhcCCCeEEEecCCHHHHHHHHHHHHhCCCCeEE
Q 030232 66 DDFKMVLVVRNDLKMGKGKIAAQCSHATLGLYKKVLYRAPKALNRWEMCAQPKVVLKIESEEDMLVLQERAKSLKLPTHI 145 (181)
Q Consensus 66 ~~~kmvlvVR~DL~Ms~GKiAAQ~aHAal~~~~~~~~~~~~~l~~W~~~G~~KVvLk~~seeel~~L~~~A~~~gl~~~~ 145 (181)
+++|||||||+||+||+||+||||||||+++|+++.+++++++++|+.+||+||||+++|+++|++|.++|++.|||+++
T Consensus 5 ~~~k~vivvr~dL~m~~GKiaAQ~~HAa~~~~~~~~~~~~~~~~~W~~~g~~Kvvlk~~~e~el~~l~~~a~~~gl~~~~ 84 (121)
T 1wn2_A 5 FKYKQVIVARADLKLSKGKLAAQVAHGAVTAAFEAYKKKREWFEAWFREGQKKVVVKVESEEELFKLKAEAEKLGLPNAL 84 (121)
T ss_dssp CCEEEEEEEESSSCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHTTCCEEE
T ss_pred ccceEEEEEECCCCcCHhHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHCCCcEEEEecCCHHHHHHHHHHHHHCCCCEEE
Confidence 58999999999999999999999999999999998888999999999999999999999999999999999999999999
Q ss_pred EEcCCCCccCCCCeeEEEe-cCCccchhhhcCCCCCC
Q 030232 146 TIDAGRTQIAPNSRTVMAI-LGPVEVVDDVTGGLKLL 181 (181)
Q Consensus 146 i~DAG~Tei~pgs~TvlAi-pgP~~~id~iTg~LKLl 181 (181)
|+|||||||||||.||+|| |||++.||+||||||||
T Consensus 85 i~DAG~Tei~~gt~TvlaigP~~~~~vd~itg~LkL~ 121 (121)
T 1wn2_A 85 IRDAGLTEIPPGTVTVLAVGPAPEEIVDKVTGNLKLL 121 (121)
T ss_dssp EECTTCTTSCTTCEEEEEEEEEEHHHHHHHHTTSEEC
T ss_pred EEcCCccccCCCCEEEEEeccCCHHHHHHhcCCCCCC
Confidence 9999999999999999999 99999999999999997
No 3
>1rzw_A Protein AF2095(GR4); beta-sheet of 4 parallel, anti-parallel beta-strands and 3 alpha-helices, structural genomics, PSI; NMR {Archaeoglobus fulgidus} SCOP: c.131.1.1 PDB: 3erj_A
Probab=100.00 E-value=1.2e-47 Score=297.26 Aligned_cols=113 Identities=40% Similarity=0.557 Sum_probs=109.9
Q ss_pred CCeEEEEEEeCCCCCCcchhhhHhhHHHHHHHHHHHhhCHHHHHHHHhcCCCeEEEecCCHHHHHHHHHHHHhCCCCeEE
Q 030232 66 DDFKMVLVVRNDLKMGKGKIAAQCSHATLGLYKKVLYRAPKALNRWEMCAQPKVVLKIESEEDMLVLQERAKSLKLPTHI 145 (181)
Q Consensus 66 ~~~kmvlvVR~DL~Ms~GKiAAQ~aHAal~~~~~~~~~~~~~l~~W~~~G~~KVvLk~~seeel~~L~~~A~~~gl~~~~ 145 (181)
+++|||||||+||+||+||+||||||||+++|+++ +++++++|+++||+||||+++|+++|++|.++|++.|||+++
T Consensus 1 ~~~k~vivVr~DL~M~~GKiaAQ~~HAa~~~~~~~---~~~~l~~W~~~G~~Kvvlk~~~e~el~~L~~~a~~~gl~~~~ 77 (123)
T 1rzw_A 1 MTLKQVIVVRDDLKLSRGKLAVQVAHAAIIGYLKS---DSSLRRKWLDEGQKKVVLKVKSLEELLGIKHKAESLGLVTGL 77 (123)
T ss_dssp CCCEEEEEEECCCSSCTTHHHHHHHHHHHHHHHHH---HTTHHHHTGGGCSSEEEEECSCHHHHHHHHHHHHHTTCCEEE
T ss_pred CCcEEEEEEECCCCCCcchHHHHHHHHHHHHHHHc---CHHHHHHHHHCCCcEEEEecCCHHHHHHHHHHHHHCCCCEEE
Confidence 47999999999999999999999999999999987 678999999999999999999999999999999999999999
Q ss_pred EEcCCCCccCCCCeeEEEe-cCCccchhhhcCCCCCC
Q 030232 146 TIDAGRTQIAPNSRTVMAI-LGPVEVVDDVTGGLKLL 181 (181)
Q Consensus 146 i~DAG~Tei~pgs~TvlAi-pgP~~~id~iTg~LKLl 181 (181)
|+|||||||||||.||+|| |+|++.||+||||||||
T Consensus 78 I~DAG~Tei~pgt~TvlaigP~p~~~vd~itg~LkL~ 114 (123)
T 1rzw_A 78 VQDAGLTEVPPGTITAVVIGPDEERKIDKVTGNLPLL 114 (123)
T ss_dssp ECCTTCCSCSTTSCEEEEEEEECHHHHHHHHTCSCCC
T ss_pred EECCCCcccCCCCEEEEEeCcCCHHHHHHhcCCCeec
Confidence 9999999999999999999 99999999999999997
No 4
>2zv3_A PTH, peptidyl-tRNA hydrolase; cytoplasm, structural genomics, NPPSFA; 2.10A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=1.6e-47 Score=292.71 Aligned_cols=114 Identities=43% Similarity=0.659 Sum_probs=104.9
Q ss_pred eEEEEEEeCCCCCCcchhhhHhhHHHHHHHHHHHhhCHHHHHHHHhcCCCeEEEecCCHHHHHHHHHHHHhCCCCeEEEE
Q 030232 68 FKMVLVVRNDLKMGKGKIAAQCSHATLGLYKKVLYRAPKALNRWEMCAQPKVVLKIESEEDMLVLQERAKSLKLPTHITI 147 (181)
Q Consensus 68 ~kmvlvVR~DL~Ms~GKiAAQ~aHAal~~~~~~~~~~~~~l~~W~~~G~~KVvLk~~seeel~~L~~~A~~~gl~~~~i~ 147 (181)
+|||||||+||+||+||+||||||||+++|+++.+++++++++|+.+||+||||+++|+++|++|.++|++.|||+++|+
T Consensus 1 ~k~vivvr~dL~m~~GKiaAQ~~HAa~~~~~~~~~~~~~~~~~W~~~g~~kivlk~~~e~~l~~l~~~a~~~gl~~~~i~ 80 (115)
T 2zv3_A 1 MKMVVVIRNDLGMGKGKMVAQGGHAIIEAFLDAKRKNPRAVDEWLREGQKKVVVKVNSEKELIDIYNKARSEGLPCSIIR 80 (115)
T ss_dssp CEEEEEEESSSCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CEEEEEEECCCCcCHhHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHCCCeEEEEecCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 69999999999999999999999999999999988899999999999999999999999999999999999999999999
Q ss_pred cCCCCccCCCCeeEEEe-cCCccchhhhcCCCCCC
Q 030232 148 DAGRTQIAPNSRTVMAI-LGPVEVVDDVTGGLKLL 181 (181)
Q Consensus 148 DAG~Tei~pgs~TvlAi-pgP~~~id~iTg~LKLl 181 (181)
|||||||||||.||+|| |||++.||+||||||||
T Consensus 81 DAG~Tei~~gt~TvlaigP~~~~~vd~itg~lkL~ 115 (115)
T 2zv3_A 81 DAGHTQLEPGTLTAVAIGPEKDEKIDKITGHLKLL 115 (115)
T ss_dssp ECC-------EEEEEEEEEECHHHHHHHHTTSCBC
T ss_pred eCCceecCCCCEEEEEeCcCCHHHHHHHhCCCCCC
Confidence 99999999999999999 99999999999999997
No 5
>1q7s_A BIT1, protein CGI-147; apoptosis; 2.00A {Homo sapiens} SCOP: c.131.1.1
Probab=100.00 E-value=1.1e-47 Score=294.31 Aligned_cols=116 Identities=56% Similarity=0.925 Sum_probs=113.4
Q ss_pred CCeEEEEEEeCCCCCCcchhhhHhhHHHHHHHHHHHhhCHHHHHHHHhcCCCeEEEecCCHHHHHHHHHHHHhCCCCeEE
Q 030232 66 DDFKMVLVVRNDLKMGKGKIAAQCSHATLGLYKKVLYRAPKALNRWEMCAQPKVVLKIESEEDMLVLQERAKSLKLPTHI 145 (181)
Q Consensus 66 ~~~kmvlvVR~DL~Ms~GKiAAQ~aHAal~~~~~~~~~~~~~l~~W~~~G~~KVvLk~~seeel~~L~~~A~~~gl~~~~ 145 (181)
+++|||||||+||+||+||+||||||||+++|+++.+++++++++|++.||+||||+++|+++|++|.++|++.|||+++
T Consensus 1 ~~~K~vivvr~dL~m~~GKiaAQ~~HAa~~~~~~~~~~~~~~~~~W~~~g~~KVvlk~~~e~~l~~l~~~a~~~gl~~~~ 80 (117)
T 1q7s_A 1 GEYKMILVVRNDLKMGKGKVAAQCSHAAVSAYKQIQRRNPEMLKQWEYCGQPKVVVKAPDEETLIALLAHAKMLGLTVSL 80 (117)
T ss_dssp CCEEEEEEEEGGGCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHTTCCEEE
T ss_pred CCeEEEEEEECCCCcCHhHHHHHHHHHHHHHHHHHHhhCHHHHHHHHhCCCeeEEEEcCCHHHHHHHHHHHHHCCCCEEE
Confidence 47999999999999999999999999999999998788999999999999999999999999999999999999999999
Q ss_pred EEcCCCCccCCCCeeEEEe-cCCccchhhhcCCCCCC
Q 030232 146 TIDAGRTQIAPNSRTVMAI-LGPVEVVDDVTGGLKLL 181 (181)
Q Consensus 146 i~DAG~Tei~pgs~TvlAi-pgP~~~id~iTg~LKLl 181 (181)
|+|||||||||||.||+|| |||.+.||+||||||||
T Consensus 81 i~DAG~Tqi~~gt~TvlaigP~~~~~vd~itg~lkL~ 117 (117)
T 1q7s_A 81 IQDAGRTQIAPGSQTVLGIGPGPADLIDKVTGHLKLY 117 (117)
T ss_dssp EEECSSSSEEEEEEEEEEEEEEEHHHHHHHHTTSCBC
T ss_pred EEECCCcccCCCCeEEEEeccCCHHHHHHhcCCCCCC
Confidence 9999999999999999999 99999999999999997
No 6
>1xty_A PTH, peptidyl-tRNA hydrolase; mixed beta sheet; 1.80A {Pyrococcus abyssi}
Probab=100.00 E-value=4.5e-47 Score=292.13 Aligned_cols=115 Identities=43% Similarity=0.700 Sum_probs=111.4
Q ss_pred CeEEEEEEeCCCCCCcchhhhHhhHHHHHHHHHHHhhC----HHHHHHHHhcCCCeEEEecCCHHHHHHHHHHHHhCCCC
Q 030232 67 DFKMVLVVRNDLKMGKGKIAAQCSHATLGLYKKVLYRA----PKALNRWEMCAQPKVVLKIESEEDMLVLQERAKSLKLP 142 (181)
Q Consensus 67 ~~kmvlvVR~DL~Ms~GKiAAQ~aHAal~~~~~~~~~~----~~~l~~W~~~G~~KVvLk~~seeel~~L~~~A~~~gl~ 142 (181)
++|||||||+||+||+||+||||||||+++|+++.+++ ++++++|+.+||+||||+++|+++|++|.++|++.|||
T Consensus 1 ~~k~vivvr~dL~m~~GKiaAQ~~HAa~~~~~~~~~~~~~~~~~~~~~W~~~g~~KiVlk~~~e~el~~l~~~a~~~gl~ 80 (120)
T 1xty_A 1 MIKMVIVVRSDIKMGKGKIAAQVAHAAVTLVVSIINSNNLRWKEWLNEWLHQGQPKIIVKVNSLDEIISRAKKAETMNLP 80 (120)
T ss_dssp CEEEEEEEESSSCCCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHTTCC
T ss_pred CcEEEEEEECCCCcCHhHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHCCCcEEEEecCCHHHHHHHHHHHHHCCCC
Confidence 48999999999999999999999999999999987665 88999999999999999999999999999999999999
Q ss_pred eEEEEcCCCCccCCCCeeEEEe-cCCccchhhhcCCCCCC
Q 030232 143 THITIDAGRTQIAPNSRTVMAI-LGPVEVVDDVTGGLKLL 181 (181)
Q Consensus 143 ~~~i~DAG~Tei~pgs~TvlAi-pgP~~~id~iTg~LKLl 181 (181)
+++|+|||||||||||.||+|| |||++.||+||||||||
T Consensus 81 ~~~i~DAG~Tei~~gs~TvlaigP~~~~~vd~itg~LkL~ 120 (120)
T 1xty_A 81 FSIIEDAGKTQLEPGTITCLGIGPAPENLVDSITGDLKLL 120 (120)
T ss_dssp EEEEECCSSSSSCTTCEEEEEEEEEEHHHHHHHHTTCEEC
T ss_pred EEEEEcCCccccCCCCeEEEEeccCCHHHHHHHhCCCCCC
Confidence 9999999999999999999999 99999999999999997
No 7
>2gax_A Hypothetical protein ATU0240; MCSG, structural genomics, agrobacterium tumfaciens, hypothe protein, PSI; 1.80A {Agrobacterium tumefaciens str} SCOP: c.131.1.1
Probab=99.90 E-value=4.2e-25 Score=172.82 Aligned_cols=112 Identities=21% Similarity=0.331 Sum_probs=103.8
Q ss_pred CeEEEEEEeCCCCCCcchhhhHhhHHHHHHHHHHH------hhCHHHHHHHHhcCCCeEEEecCCHHHHHHHHHHHHhCC
Q 030232 67 DFKMVLVVRNDLKMGKGKIAAQCSHATLGLYKKVL------YRAPKALNRWEMCAQPKVVLKIESEEDMLVLQERAKSLK 140 (181)
Q Consensus 67 ~~kmvlvVR~DL~Ms~GKiAAQ~aHAal~~~~~~~------~~~~~~l~~W~~~G~~KVvLk~~seeel~~L~~~A~~~g 140 (181)
+.|+|||||.||+|+ ++++||||++++++.+.. .++++...+|...+|+++||++++ ++|.+|.++|.+.|
T Consensus 3 ~~K~viVv~~dL~~g--~~aN~aA~l~~gl~~~~~~~~G~~~~d~~g~~~~~~~~~p~~VL~a~~-~~L~~l~~~a~~~~ 79 (135)
T 2gax_A 3 DTKIAVILRDDLAVW--QKLNVTAFLMSGIVAQTGEIIGEPYRDGAGNVYNPLSIQPIVVMATDQ-EALRKIHQRSLERD 79 (135)
T ss_dssp SEEEEEEEETTSCHH--HHHHHHHHHHHHHHHHCGGGBCSCEECTTSCEECCCBSSCEEEEEECH-HHHHHHHHHHHHTT
T ss_pred CcEEEEEEcCCChHH--HHHHHHHHHHHHHHHhChhhcCCcccCcccccccccCCCcEEEEEECH-HHHHHHHHHHHHCC
Confidence 679999999999987 999999999999998753 236677889999999999999977 99999999999999
Q ss_pred CCeEEEEcCCC------------CccCCCCeeEEEe--cCCccchhhhcCCCCCC
Q 030232 141 LPTHITIDAGR------------TQIAPNSRTVMAI--LGPVEVVDDVTGGLKLL 181 (181)
Q Consensus 141 l~~~~i~DAG~------------Tei~pgs~TvlAi--pgP~~~id~iTg~LKLl 181 (181)
|++..+.|+|+ ||++|++.|++|| |||++.||++||+|||.
T Consensus 80 l~~~~f~d~~~~~~~~~~~~~~~~~~~~~~l~~~GI~l~Gp~k~VdklTg~L~L~ 134 (135)
T 2gax_A 80 ITTSLYIEEMFATGHDAANRQVFSHFSPDTAKVVGMALRADRKIVDKITKGAKLH 134 (135)
T ss_dssp CCCEEEEGGGGGCCCHHHHHHHHTTCCTTTCCEEEEEEEEEHHHHHHHTTTCEEC
T ss_pred CcEEeccHHhhhCCCHHHHHHHHhcCCcccceEEEEEEECCHHHHHHHhCCCCCC
Confidence 99999999999 9999999999999 79999999999999985
No 8
>3j21_Z 50S ribosomal protein L30E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=78.25 E-value=15 Score=25.77 Aligned_cols=67 Identities=13% Similarity=0.077 Sum_probs=44.3
Q ss_pred HHHHHHHhcCCCeEEEecCC--HHHHHHHHHHHHhCCCCeEEEEcCCCCccC--CC---CeeEEEe--cCCccchhh
Q 030232 106 KALNRWEMCAQPKVVLKIES--EEDMLVLQERAKSLKLPTHITIDAGRTQIA--PN---SRTVMAI--LGPVEVVDD 173 (181)
Q Consensus 106 ~~l~~W~~~G~~KVvLk~~s--eeel~~L~~~A~~~gl~~~~i~DAG~Tei~--pg---s~TvlAi--pgP~~~id~ 173 (181)
+....+.+.|+.|.|+-..| ++-...+...++..++|++.+... +.|+- =| ..+++|| ||-++.++.
T Consensus 21 ~~v~kai~~gka~lViiA~D~~~~~~~~i~~~c~~~~ip~~~~~~s-~~eLG~a~Gk~~~~~~vaI~d~g~a~~l~~ 96 (99)
T 3j21_Z 21 NETIRLAKTGGAKLIIVAKNAPKEIKDDIYYYAKLSDIPVYEFEGT-SVELGTLLGKPFVVASLAIVDPGESKILAI 96 (99)
T ss_dssp HHHHHHHHHTCCSEEEEECCCCHHHHHHHHHHHHHTTCCEEEECCC-SCGGGGTTCSTTCSEEEEESSCSSCSHHHH
T ss_pred HHHHHHHHcCCccEEEEeCCCCHHHHHHHHHHHHHcCCCEEEeCCC-HHHHHHHHCCCCCEEEEEEEccchHHHHHh
Confidence 45667777899999988776 445567777888999998776221 22221 12 3568888 777766654
No 9
>1xbi_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich fold, RNA binding protein/structural protein complex; HET: EPE; 1.45A {Methanocaldococcus jannaschii} SCOP: d.79.3.1 PDB: 1ra4_A* 1sds_A 3paf_A
Probab=57.46 E-value=4.1 Score=30.03 Aligned_cols=67 Identities=16% Similarity=0.151 Sum_probs=44.5
Q ss_pred HHHHHHHhcCCCeEEEecCCHH--H-HHHHHHHHHhCCCCeEEEEc-------CCCCccCCCCeeEEEe--cCCccchhh
Q 030232 106 KALNRWEMCAQPKVVLKIESEE--D-MLVLQERAKSLKLPTHITID-------AGRTQIAPNSRTVMAI--LGPVEVVDD 173 (181)
Q Consensus 106 ~~l~~W~~~G~~KVvLk~~see--e-l~~L~~~A~~~gl~~~~i~D-------AG~Tei~pgs~TvlAi--pgP~~~id~ 173 (181)
+....+.+.|+.+.|+-..|-+ + ...|...++..|+|++.+-+ .|+ +=..+++|| +|..+.+++
T Consensus 35 ~~v~kai~~gka~lViiA~D~~p~~~~~~l~~lc~~~~VP~~~v~sk~eLG~a~G~----~~~~s~vaI~d~g~a~~l~~ 110 (120)
T 1xbi_A 35 NEVTKAVERGIAKLVIIAEDVKPEEVVAHLPYLCEEKGIPYAYVASKQDLGKAAGL----EVAASSVAIINEGDAEELKV 110 (120)
T ss_dssp HHHHHHHHHTCCSEEEEESCCSSGGGTTTHHHHHHHHTCCEEEESCHHHHHHHTTC----SSCCSEEEEEECSCHHHHHH
T ss_pred HHHHHHHHcCCceEEEEcCCCChHHHHHHHHHHHHhcCCCEEEeCCHHHHHHHhCC----CCCEEEEEEeccchHHHHHH
Confidence 4456677778999999888753 3 46778888899999766533 233 114677887 666555655
Q ss_pred hcC
Q 030232 174 VTG 176 (181)
Q Consensus 174 iTg 176 (181)
+..
T Consensus 111 l~~ 113 (120)
T 1xbi_A 111 LIE 113 (120)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 10
>1w41_A 50S ribosomal protein L30E; electrostatic interactions, thermostability, protein engineering; 1.7A {Thermococcus celer} SCOP: d.79.3.1 PDB: 3n4y_A 3lfo_A 1w40_A 1go0_A 1go1_A 1h7m_A 1w42_A 1w3e_X 3ra6_A 3ra5_A 3n4z_A 2bo1_A
Probab=52.15 E-value=57 Score=22.70 Aligned_cols=41 Identities=7% Similarity=0.040 Sum_probs=31.2
Q ss_pred HHHHHHHhcCCCeEEEecCC--HHHHHHHHHHHHhCCCCeEEE
Q 030232 106 KALNRWEMCAQPKVVLKIES--EEDMLVLQERAKSLKLPTHIT 146 (181)
Q Consensus 106 ~~l~~W~~~G~~KVvLk~~s--eeel~~L~~~A~~~gl~~~~i 146 (181)
+....+.+.|+.+.|+-..| ++-...+...++..++|++.+
T Consensus 22 ~~v~kai~~gka~lViiA~D~~~~~~~~l~~~c~~~~vp~~~~ 64 (101)
T 1w41_A 22 RKSIQYAKMGGAKLIIVARNARPDIKEDIEYYARLSGIPVYEF 64 (101)
T ss_dssp HHHHHHHHHTCCSEEEEETTSCHHHHHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHcCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEe
Confidence 45667777888999988766 445667777888899998765
No 11
>3e5d_A Putative glyoxalase I; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lyase; 2.70A {Listeria monocytogenes str}
Probab=50.79 E-value=26 Score=23.41 Aligned_cols=31 Identities=10% Similarity=0.125 Sum_probs=27.0
Q ss_pred cCCCeEEEecCCHHHHHHHHHHHHhCCCCeE
Q 030232 114 CAQPKVVLKIESEEDMLVLQERAKSLKLPTH 144 (181)
Q Consensus 114 ~G~~KVvLk~~seeel~~L~~~A~~~gl~~~ 144 (181)
.|..-+.+.++|.+++.++.+++++.|+...
T Consensus 70 ~g~~hi~~~v~d~~~v~~~~~~l~~~G~~~~ 100 (127)
T 3e5d_A 70 LGWAHIAISTGTKEAVDELTEKLRQDGFAIA 100 (127)
T ss_dssp SSCCCEEEECSSHHHHHHHHHHHHHTTCCEE
T ss_pred CceEEEEEEcCCHHHHHHHHHHHHHcCCeEe
Confidence 4556799999999999999999999998754
No 12
>2ki0_A DS119; beta-alpha-beta, de novo protein; NMR {Synthetic}
Probab=49.30 E-value=6.3 Score=23.31 Aligned_cols=24 Identities=21% Similarity=0.209 Sum_probs=20.0
Q ss_pred cCCHHHHHHHHHHHHhCCCCeEEE
Q 030232 123 IESEEDMLVLQERAKSLKLPTHIT 146 (181)
Q Consensus 123 ~~seeel~~L~~~A~~~gl~~~~i 146 (181)
....|||..|.++|+..+|....|
T Consensus 11 ggtpeelkklkeeakkanirvtfw 34 (36)
T 2ki0_A 11 GGTPEELKKLKEEAKKANIRVTFW 34 (36)
T ss_dssp CCCHHHHHHHHHHHHHHCCCCCBC
T ss_pred cCCHHHHHHHHHHHHhccEEEEee
Confidence 447899999999999999876655
No 13
>3cpq_A 50S ribosomal protein L30E; RNA-protein, elongation factor, ribonucleoprotein, structural genomics, NPPSFA; 1.90A {Methanocaldococcus jannaschii}
Probab=46.87 E-value=75 Score=22.55 Aligned_cols=42 Identities=14% Similarity=0.064 Sum_probs=32.8
Q ss_pred HHHHHHHHhcCCCeEEEecCC--HHHHHHHHHHHHhCCCCeEEE
Q 030232 105 PKALNRWEMCAQPKVVLKIES--EEDMLVLQERAKSLKLPTHIT 146 (181)
Q Consensus 105 ~~~l~~W~~~G~~KVvLk~~s--eeel~~L~~~A~~~gl~~~~i 146 (181)
-+....+.+.|+.+.|+-..| ++-...|...++..++|++.+
T Consensus 26 ~~~v~kai~~gka~lViiA~D~~~~~~~~l~~~c~~~~Vp~~~~ 69 (110)
T 3cpq_A 26 SKRTIKFVKHGEGKLVVLAGNIPKDLEEDVKYYAKLSNIPVYQH 69 (110)
T ss_dssp HHHHHHHHHTTCCSEEEECTTCBHHHHHHHHHHHHHTTCCEEEC
T ss_pred HHHHHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 345677778899999998775 455677888889999998766
No 14
>1uxy_A MURB, uridine diphospho-N-acetylenolpyruvylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP; HET: FAD EPU; 1.80A {Escherichia coli} SCOP: d.145.1.2 d.146.1.1 PDB: 1mbb_A* 1mbt_A* 2q85_A* 2mbr_A*
Probab=45.16 E-value=16 Score=31.45 Aligned_cols=35 Identities=17% Similarity=0.209 Sum_probs=30.8
Q ss_pred HHhcCCCeEEEecCCHHHHHHHHHHHHhCCCCeEE
Q 030232 111 WEMCAQPKVVLKIESEEDMLVLQERAKSLKLPTHI 145 (181)
Q Consensus 111 W~~~G~~KVvLk~~seeel~~L~~~A~~~gl~~~~ 145 (181)
|.-.|.+..++...|++|+.++.+.|++.++|..+
T Consensus 9 ~~igg~a~~~v~p~s~eel~~~l~~a~~~~~pv~v 43 (340)
T 1uxy_A 9 FGIDHNAQHIVCAEDEQQLLNAWQYATAEGQPVLI 43 (340)
T ss_dssp TCCCCBEEEEEEESSHHHHHHHHHHHHHTTCCEEE
T ss_pred CCCCccccEEEEeCCHHHHHHHHHHHHHcCCCEEE
Confidence 45578889999999999999999999999999754
No 15
>2xzm_U Ribosomal protein L7AE containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_U
Probab=44.97 E-value=54 Score=24.25 Aligned_cols=67 Identities=15% Similarity=0.127 Sum_probs=42.8
Q ss_pred hcCCCeEEEecCCHH--H-HHHHHHHHHhCCCCeEEEEc-------CCCCccC----C-C--CeeEEEe--cCCc-c--c
Q 030232 113 MCAQPKVVLKIESEE--D-MLVLQERAKSLKLPTHITID-------AGRTQIA----P-N--SRTVMAI--LGPV-E--V 170 (181)
Q Consensus 113 ~~G~~KVvLk~~see--e-l~~L~~~A~~~gl~~~~i~D-------AG~Tei~----p-g--s~TvlAi--pgP~-~--~ 170 (181)
+.|+.+.|+-..|.+ + ...+...++..+||++.+-+ .|++-+. | . ..+|++| ||.. + .
T Consensus 37 ~~gka~LViiA~D~~p~~~~~~i~~lc~~~~Ip~~~v~sk~~LG~a~G~~k~d~~g~~rk~v~~s~vaI~d~g~~~~~~~ 116 (126)
T 2xzm_U 37 EAKQALFVCVAEDCDQGNYVKLVKALCAKNEIKYVSVPKRASLGEYLGHFTANAKGEIKKVKGCSSLAIRKYAPEITEDE 116 (126)
T ss_dssp HHTCCSEEEEESSCCSTTHHHHHHHHHHHTTCCEEEESCSHHHHHHHTCCCBCTTCCBSCCCCCCEEEESSCCTTCCHHH
T ss_pred HcCCceEEEEeCCCChHHHHHHHHHHHHHhCCCEEEECCHHHHHHHHCCCccccccCcCceeeEEEEEEEecCcccCHHH
Confidence 457788888776652 3 35677888999999987644 2432221 1 1 2778888 7865 3 4
Q ss_pred hhhhcCCCC
Q 030232 171 VDDVTGGLK 179 (181)
Q Consensus 171 id~iTg~LK 179 (181)
.+.+...+|
T Consensus 117 ~~~l~~~~~ 125 (126)
T 2xzm_U 117 KKIIEGALK 125 (126)
T ss_dssp HHHHTTSCB
T ss_pred HHHHHHHhc
Confidence 666666554
No 16
>1rlg_A 50S ribosomal protein L7AE; protein-RNA, structural protein/RNA complex; HET: 5BU; 2.70A {Archaeoglobus fulgidus} SCOP: d.79.3.1
Probab=41.05 E-value=29 Score=25.12 Aligned_cols=60 Identities=15% Similarity=0.093 Sum_probs=41.5
Q ss_pred HHHHHHHHhcCCCeEEEecCCHH--H-HHHHHHHHHhCCCCeEEEEc-------CCCCccCCCCeeEEEe--cCCc
Q 030232 105 PKALNRWEMCAQPKVVLKIESEE--D-MLVLQERAKSLKLPTHITID-------AGRTQIAPNSRTVMAI--LGPV 168 (181)
Q Consensus 105 ~~~l~~W~~~G~~KVvLk~~see--e-l~~L~~~A~~~gl~~~~i~D-------AG~Tei~pgs~TvlAi--pgP~ 168 (181)
-+....+.+.|+.+.|+-..|-+ + ...|...++..|+|++.+-+ .|+ +-..+++|| +|-.
T Consensus 32 ~~~v~kal~~gka~lViiA~D~~~~~~~~~l~~lc~~~~Vp~~~~~sk~eLG~a~G~----~~~~~~vaI~d~g~a 103 (119)
T 1rlg_A 32 TNETTKAVERGLAKLVYIAEDVDPPEIVAHLPLLCEEKNVPYIYVKSKNDLGRAVGI----EVPCASAAIINEGEL 103 (119)
T ss_dssp HHHHHHHHTTTCCSEEEEESCCSCSTTTTHHHHHHHHHTCCEEEESCHHHHHHHTTC----SSCCSEEEEEECGGG
T ss_pred HHHHHHHHHcCCCcEEEEeCCCChHHHHHHHHHHHHHcCCCEEEeCCHHHHHHHhCC----CCCeEEEEEecCchH
Confidence 35567788889999999888764 3 46777888899999766543 233 114577787 5543
No 17
>1twu_A Hypothetical protein YYCE; structural genomics, protein structure initiative, MCSG, DUP of the alpha-beta sandwichs. bacillus subtilis, PSI; 2.00A {Bacillus subtilis} SCOP: d.32.1.8
Probab=40.34 E-value=50 Score=22.80 Aligned_cols=29 Identities=7% Similarity=0.226 Sum_probs=25.2
Q ss_pred CCCeEEEecCCHHHHHHHHHHHHhCCCCe
Q 030232 115 AQPKVVLKIESEEDMLVLQERAKSLKLPT 143 (181)
Q Consensus 115 G~~KVvLk~~seeel~~L~~~A~~~gl~~ 143 (181)
|..-+.+.++|.+++.++.+++++.|+..
T Consensus 77 ~~~hi~~~v~d~~~l~~~~~~l~~~G~~~ 105 (139)
T 1twu_A 77 PDSLLVFYVPNAVELAAITSKLKHMGYQE 105 (139)
T ss_dssp TTCEEEEECCCHHHHHHHHHHHHHTTCCE
T ss_pred CccEEEEEeCCcchHHHHHHHHHHcCCcC
Confidence 44568999999999999999999999864
No 18
>3tx1_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: FAD; 2.69A {Listeria monocytogenes}
Probab=39.02 E-value=22 Score=30.37 Aligned_cols=40 Identities=15% Similarity=0.180 Sum_probs=33.3
Q ss_pred HHhcCCCeEEEecCCHHHHHHHHHHHHhCCCCeEEEEcCCC
Q 030232 111 WEMCAQPKVVLKIESEEDMLVLQERAKSLKLPTHITIDAGR 151 (181)
Q Consensus 111 W~~~G~~KVvLk~~seeel~~L~~~A~~~gl~~~~i~DAG~ 151 (181)
|...+.+..++...|++|+.++.+.|.+.++|..+ +=.|.
T Consensus 49 ~~igg~p~~vv~P~s~eev~~~v~~a~~~~~pv~v-~GgGs 88 (322)
T 3tx1_A 49 TKTGGAADVFVMPKTIEEAQEVVAYCHQNKIPLTI-LGNGS 88 (322)
T ss_dssp TSCCCEEEEEEECSSHHHHHHHHHHHHHTTCCEEE-ESCCT
T ss_pred CCcCceeeEEEEeCCHHHHHHHHHHHHHcCCcEEE-ECCcc
Confidence 45578899999999999999999999999999654 44554
No 19
>3v7q_A Probable ribosomal protein YLXQ; L7AE superfamily, K-turn binding, K-turn RNA, hypothetical R protein, RNA binding protein; HET: CIT; 1.55A {Bacillus subtilis}
Probab=37.65 E-value=1e+02 Score=21.46 Aligned_cols=42 Identities=17% Similarity=0.162 Sum_probs=33.5
Q ss_pred HHHHHHHHhcCCCeEEEecCCH--HHHHHHHHHHHhCCCCeEEE
Q 030232 105 PKALNRWEMCAQPKVVLKIESE--EDMLVLQERAKSLKLPTHIT 146 (181)
Q Consensus 105 ~~~l~~W~~~G~~KVvLk~~se--eel~~L~~~A~~~gl~~~~i 146 (181)
.+....|.+.|..+.|+-..|- .....+...++..++|++.+
T Consensus 24 ~~~v~kai~~gka~lViiA~D~~~~~~~~i~~~c~~~~vp~~~~ 67 (101)
T 3v7q_A 24 EDLVIKEIRNARAKLVLLTEDASSNTAKKVTDKCNYYKVPYKKV 67 (101)
T ss_dssp HHHHHHHHHTTCCSEEEEETTSCHHHHHHHHHHHHHTTCCEEEE
T ss_pred hhhhHHHHhcCceeEEEEeccccccchhhhcccccccCCCeeee
Confidence 3456778888999999998874 45667777789999998877
No 20
>1v95_A Nuclear receptor coactivator 5; coactivator independent of AF-2 function (CIA), structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: c.51.1.1
Probab=36.65 E-value=23 Score=26.82 Aligned_cols=54 Identities=17% Similarity=-0.016 Sum_probs=40.2
Q ss_pred HHHHHhcCCCeEEEecC-CHHHHHHHHHHHHhCCCCeEEEEcCCCCccCCCCeeEEEe
Q 030232 108 LNRWEMCAQPKVVLKIE-SEEDMLVLQERAKSLKLPTHITIDAGRTQIAPNSRTVMAI 164 (181)
Q Consensus 108 l~~W~~~G~~KVvLk~~-seeel~~L~~~A~~~gl~~~~i~DAG~Tei~pgs~TvlAi 164 (181)
.......|.+-- +-.. +.+.|-.-...|+..++|+.+|+ |-.|++.||+||--.
T Consensus 28 ~~~L~~~GiRve-vD~~r~~e~Lg~kIR~a~~~kvPy~lVV--G~kE~e~~sVsVR~r 82 (130)
T 1v95_A 28 GRKVRDLGMVVD-LIFLNTEVSLSQALEDVSRGGSPFAIVI--TQQHQIHRSCTVNIM 82 (130)
T ss_dssp HHHHHTTTCCEE-EEECTTSSCHHHHHHHHHHHTCSEEEEE--CHHHHHHTEEEEEEC
T ss_pred HHHHHHCCCEEE-EecCCCCCcHHHHHHHHHHcCCCEEEEE--echHHhcCeeEEEec
Confidence 344455687643 3342 14779999999999999999997 778999999999854
No 21
>1xqa_A Glyoxalase/bleomycin resistance protein; dioxygenase, structural GEN midwest center for structural genomics, MCSG; HET: P6G; 1.80A {Bacillus cereus atcc 14579} SCOP: d.32.1.2
Probab=35.07 E-value=55 Score=21.49 Aligned_cols=30 Identities=23% Similarity=0.107 Sum_probs=25.8
Q ss_pred cCCCeEEEecCCHHHHHHHHHHHHhCCCCe
Q 030232 114 CAQPKVVLKIESEEDMLVLQERAKSLKLPT 143 (181)
Q Consensus 114 ~G~~KVvLk~~seeel~~L~~~A~~~gl~~ 143 (181)
.+..-+.+.++|.+++.++.+++++.|++.
T Consensus 59 ~~~~~~~~~v~~~~d~~~~~~~l~~~G~~~ 88 (113)
T 1xqa_A 59 PKTFHVGFPQESEEQVDKINQRLKEDGFLV 88 (113)
T ss_dssp CTTCCEEEECSSHHHHHHHHHHHHHTTCCC
T ss_pred CceeEEEEEcCCHHHHHHHHHHHHHCCCEE
Confidence 345568999999999999999999999863
No 22
>2kjz_A ATC0852; protein of unknown function, dimer, structural genomics, PSI protein structure initiative; NMR {Agrobacterium tumefaciens}
Probab=34.28 E-value=53 Score=23.30 Aligned_cols=30 Identities=7% Similarity=0.055 Sum_probs=25.8
Q ss_pred cCCCeEEEecCCHHHHHHHHHHHHhCCCCe
Q 030232 114 CAQPKVVLKIESEEDMLVLQERAKSLKLPT 143 (181)
Q Consensus 114 ~G~~KVvLk~~seeel~~L~~~A~~~gl~~ 143 (181)
.+..-+.+.++|.+++.++.+++++.|+..
T Consensus 85 ~~~~hl~f~v~d~~dv~~~~~~l~~~G~~~ 114 (144)
T 2kjz_A 85 GGGGELAFRVENDAQVDETFAGWKASGVAM 114 (144)
T ss_dssp SSSCEEEEECSSHHHHHHHHHHHHHTTCCC
T ss_pred CCceEEEEEeCCHHHHHHHHHHHHHCCCeE
Confidence 355679999999999999999999999753
No 23
>3lto_A Mevalonate diphosphate decarboxylase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.27A {Legionella pneumophila}
Probab=33.70 E-value=46 Score=28.45 Aligned_cols=47 Identities=15% Similarity=0.100 Sum_probs=30.9
Q ss_pred CCeEEEecCCHHHHHHHHHHHH-hCCCCeEEEEcCCCCccCCCCeeEEEecCCccch
Q 030232 116 QPKVVLKIESEEDMLVLQERAK-SLKLPTHITIDAGRTQIAPNSRTVMAILGPVEVV 171 (181)
Q Consensus 116 ~~KVvLk~~seeel~~L~~~A~-~~gl~~~~i~DAG~Tei~pgs~TvlAipgP~~~i 171 (181)
++-+..-.+.-.++.++..+++ +.|++.+.+.|||- ||+++ .|.+..
T Consensus 250 ~P~~~~l~p~s~~i~~~v~~~r~~~G~~~~~tsgAGP--------nv~~l-~~~~~~ 297 (323)
T 3lto_A 250 EKPFSYITDNTLHILSVIEKFWNEKGDGPVVTMDAGP--------NVHLL-YRSDQT 297 (323)
T ss_dssp SSCCCSCCHHHHHHHHHHHHHHHHHSCCCEEECCSSS--------CEEEE-ECGGGH
T ss_pred CCCceecCchHHHHHHHHHHHHHhCCCeEEEEECCCC--------CeEEE-EecccH
Confidence 3444444555567777777766 67899999999994 56666 444433
No 24
>1mli_A Muconolactone isomerase; intramolecular oxidoreductase; 3.30A {Pseudomonas putida} SCOP: d.58.4.1
Probab=32.78 E-value=45 Score=24.06 Aligned_cols=74 Identities=18% Similarity=0.187 Sum_probs=43.4
Q ss_pred EEEEEeCCCCCCcchhhhHhhHH--HHHHHHHHHhhCHHHHHHHHhcCCCe--EEEecCCHHHHHHHHHHHHhCCCCeEE
Q 030232 70 MVLVVRNDLKMGKGKIAAQCSHA--TLGLYKKVLYRAPKALNRWEMCAQPK--VVLKIESEEDMLVLQERAKSLKLPTHI 145 (181)
Q Consensus 70 mvlvVR~DL~Ms~GKiAAQ~aHA--al~~~~~~~~~~~~~l~~W~~~G~~K--VvLk~~seeel~~L~~~A~~~gl~~~~ 145 (181)
|-+.|+.+.+.+.+--+.+..-. .-.+|..-..+.-.+..-|+-.|+.. -+..++|.+||.++.. ++|-+-
T Consensus 1 MlFlV~m~V~~P~~~~~~~~~~~~a~Eka~a~eLq~~G~~~~lWRv~G~y~nisIfdv~s~~eLh~iL~-----~LPLfp 75 (96)
T 1mli_A 1 MLFHVKMTVKLPVDMDPAKATQLKADEKELAQRLQREGTWRHLWRIAGHYANYSVFDVPSVEALHDTLM-----QLPLFP 75 (96)
T ss_pred CeEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeEEEEEecCCccEEEEEEcCCHHHHHHHHH-----hCCCCc
Confidence 44677888877766555554322 11222222233444566677667643 3668999999988775 467666
Q ss_pred EEc
Q 030232 146 TID 148 (181)
Q Consensus 146 i~D 148 (181)
+.+
T Consensus 76 ym~ 78 (96)
T 1mli_A 76 YMD 78 (96)
T ss_pred eEE
Confidence 663
No 25
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=32.53 E-value=1.5e+02 Score=22.40 Aligned_cols=44 Identities=20% Similarity=0.256 Sum_probs=32.2
Q ss_pred HHHHHHHhcCCCeEEE--ecCCHHHHHHHHHHHHhCCCCeEEEEcC
Q 030232 106 KALNRWEMCAQPKVVL--KIESEEDMLVLQERAKSLKLPTHITIDA 149 (181)
Q Consensus 106 ~~l~~W~~~G~~KVvL--k~~seeel~~L~~~A~~~gl~~~~i~DA 149 (181)
..-+.|++..|--+|+ ..+|.+=+....+.|+++|+..++++..
T Consensus 67 nireiwerypqldvvvivttddkewikdfieeakergvevfvvynn 112 (162)
T 2l82_A 67 NIREIWERYPQLDVVVIVTTDDKEWIKDFIEEAKERGVEVFVVYNN 112 (162)
T ss_dssp HHHHHHHHCTTCCEEEEEECCCHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred HHHHHHHhCCCCcEEEEEecCcHHHHHHHHHHHHhcCcEEEEEecC
Confidence 3457898876655443 4556666678999999999999998743
No 26
>2a4x_A Mitomycin-binding protein; ALFA/beta protein, mitomycin C-binding protein, bleomycin A2, antimicrobial protein; HET: BLM; 1.40A {Streptomyces caespitosus} SCOP: d.32.1.2 PDB: 2a4w_A* 1kmz_A 1kll_A*
Probab=32.08 E-value=63 Score=22.23 Aligned_cols=30 Identities=3% Similarity=-0.036 Sum_probs=25.7
Q ss_pred CCCeEEEecCCHHHHHHHHHHHHhCCCCeE
Q 030232 115 AQPKVVLKIESEEDMLVLQERAKSLKLPTH 144 (181)
Q Consensus 115 G~~KVvLk~~seeel~~L~~~A~~~gl~~~ 144 (181)
+..-+.+.++|.+++.++.+++++.|+...
T Consensus 71 ~~~~l~f~v~~~~dv~~~~~~l~~~G~~~~ 100 (138)
T 2a4x_A 71 HRFAIAFEFPDTASVDKKYAELVDAGYEGH 100 (138)
T ss_dssp CSEEEEEECSSHHHHHHHHHHHHHTTCCEE
T ss_pred CeEEEEEEeCCHHHHHHHHHHHHHCCCcee
Confidence 445689999999999999999999998743
No 27
>2rbb_A Glyoxalase/bleomycin resistance protein/dioxygena; structural genomics, PSI-2, PROT structure initiative; 1.82A {Burkholderia phytofirmans}
Probab=31.22 E-value=52 Score=22.80 Aligned_cols=25 Identities=12% Similarity=0.078 Sum_probs=23.0
Q ss_pred eEEEecCCHHHHHHHHHHHHhCCCC
Q 030232 118 KVVLKIESEEDMLVLQERAKSLKLP 142 (181)
Q Consensus 118 KVvLk~~seeel~~L~~~A~~~gl~ 142 (181)
-+.+.++|.+++.++.+++++.|+.
T Consensus 78 ~~~f~v~~~~dv~~~~~~l~~~G~~ 102 (141)
T 2rbb_A 78 LLNFDVDTKEAVDKLVPVAIAAGAT 102 (141)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCE
T ss_pred EEEEEcCCHHHHHHHHHHHHHcCCe
Confidence 6889999999999999999999975
No 28
>3dnf_A ISPH, LYTB, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; trilobal strucure, open alpha/beta, iron, iron-sulfur, isopr biosynthesis; 1.65A {Aquifex aeolicus}
Probab=30.20 E-value=17 Score=31.33 Aligned_cols=59 Identities=17% Similarity=0.213 Sum_probs=40.6
Q ss_pred eEEEecCCHHHHHHHHHHHHhCCCCeEEEEcCCCCccCCC---CeeEEEe-cC---CccchhhhcCCC
Q 030232 118 KVVLKIESEEDMLVLQERAKSLKLPTHITIDAGRTQIAPN---SRTVMAI-LG---PVEVVDDVTGGL 178 (181)
Q Consensus 118 KVvLk~~seeel~~L~~~A~~~gl~~~~i~DAG~Tei~pg---s~TvlAi-pg---P~~~id~iTg~L 178 (181)
-+|+..++-..=.+|++-|++.|.+++.|-++. ++.|. ....+|| -| |...|+++...|
T Consensus 213 miVVGg~nSSNT~rL~eia~~~~~~ty~Ie~~~--el~~~wl~~~~~VGITAGASTP~~li~eVi~~l 278 (297)
T 3dnf_A 213 MIIIGGKNSGNTRRLYYISKELNPNTYHIETAE--ELQPEWFRGVKRVGISAGASTPDWIIEQVKSRI 278 (297)
T ss_dssp EEEESCTTCHHHHHHHHHHHHHCSSEEEESSGG--GCCGGGGTTCSEEEEEECTTCCHHHHHHHHHHH
T ss_pred EEEECCCCCchhHHHHHHHHhcCCCEEEeCChH--HCCHHHhCCCCEEEEeecCCCCHHHHHHHHHHH
Confidence 466666666778889999999999999987765 56542 2344566 45 666777665443
No 29
>1hsk_A UDP-N-acetylenolpyruvoylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP, flavoprotein, FAD; HET: FAD; 2.30A {Staphylococcus aureus} SCOP: d.145.1.2 d.146.1.1
Probab=30.16 E-value=33 Score=28.98 Aligned_cols=40 Identities=10% Similarity=0.173 Sum_probs=32.1
Q ss_pred HHhcCCCeEEEecCCHHHHHHHHHHHHhCCCCeEEEEcCCC
Q 030232 111 WEMCAQPKVVLKIESEEDMLVLQERAKSLKLPTHITIDAGR 151 (181)
Q Consensus 111 W~~~G~~KVvLk~~seeel~~L~~~A~~~gl~~~~i~DAG~ 151 (181)
|...+.+..++...|++|+.++.+.|.+.++|..+ +=.|.
T Consensus 43 ~~~~~~p~~vv~P~s~eev~~~l~~a~~~~~pv~~-~GgGt 82 (326)
T 1hsk_A 43 TKTGGNADFYITPTKNEEVQAVVKYAYQNEIPVTY-LGNGS 82 (326)
T ss_dssp TSCCCEEEEEECCSSHHHHHHHHHHHHHTTCCEEE-ESSCS
T ss_pred CCcCCcceEEEEcCCHHHHHHHHHHHHHcCCCEEE-ECCCC
Confidence 33467789999999999999999999999998654 44443
No 30
>3oaj_A Putative ring-cleaving dioxygenase MHQO; structural genomics, protein structure initiative, PSI-biolo unknown function; 1.40A {Bacillus subtilis subsp}
Probab=28.86 E-value=1e+02 Score=25.63 Aligned_cols=63 Identities=17% Similarity=0.059 Sum_probs=41.8
Q ss_pred eEEEecCCHHHHHHHHHHHHhCCCCeEEEEcCCC-----CccCCCCeeEEEe--cCC--ccchhhhcCCCCC
Q 030232 118 KVVLKIESEEDMLVLQERAKSLKLPTHITIDAGR-----TQIAPNSRTVMAI--LGP--VEVVDDVTGGLKL 180 (181)
Q Consensus 118 KVvLk~~seeel~~L~~~A~~~gl~~~~i~DAG~-----Tei~pgs~TvlAi--pgP--~~~id~iTg~LKL 180 (181)
-+.+.++|.+++.+..+.+++.|++..-+.|-+. -.=|.|..-=++. ||- .+.++.+=.+|+|
T Consensus 218 HiAf~v~d~~~l~~~~~~L~~~G~~~~~~~~r~~~~siYfrDP~G~~iEl~td~pgf~~De~~~~lg~~l~l 289 (335)
T 3oaj_A 218 HIAWRANDDEDQLDWQRYIASHGYGVTPVRDRNYFNAIYFREHGEILFEIATDPPGFAHDETQETMGEKLML 289 (335)
T ss_dssp EEEEEESSHHHHHHHHHHHHHTTCCCCCCEECSSSEEEEEECTTSCEEEEEESCSCTTSSSCTTTTTSSBCC
T ss_pred EEEEEcCCHHHHHHHHHHHHHCCCCccccccCCcEEEEEEECCCCcEEEEEeCCCCCCcCCChHHhCccccC
Confidence 4789999999999999999999998654444432 1234566666666 442 2345555445554
No 31
>2ba3_A NIKA; dimer, bacterial conjugation, relaxase, DNA binding, ribbon- helix-helix, DNA binding protein; NMR {Plasmid R64}
Probab=28.48 E-value=61 Score=19.63 Aligned_cols=25 Identities=16% Similarity=0.163 Sum_probs=20.7
Q ss_pred CeEEEecCCHHHHHHHHHHHHhCCCC
Q 030232 117 PKVVLKIESEEDMLVLQERAKSLKLP 142 (181)
Q Consensus 117 ~KVvLk~~seeel~~L~~~A~~~gl~ 142 (181)
..|.+++ +++|...|.+.|+..|+.
T Consensus 16 ~~i~vRl-t~eE~~~l~~~A~~~g~s 40 (51)
T 2ba3_A 16 VVRTLRF-SPVEDETIRKKAEDSGLT 40 (51)
T ss_dssp EEEEEEE-CHHHHHHHHHHHHHHTCC
T ss_pred eeEEEEE-CHHHHHHHHHHHHHhCCC
Confidence 3477888 678999999999988874
No 32
>3rhe_A NAD-dependent benzaldehyde dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, SGX; 2.05A {Legionella pneumophila}
Probab=27.98 E-value=75 Score=22.67 Aligned_cols=29 Identities=7% Similarity=0.124 Sum_probs=24.9
Q ss_pred CCCeEEEecCCHHHHHHHHHHHHhCCCCe
Q 030232 115 AQPKVVLKIESEEDMLVLQERAKSLKLPT 143 (181)
Q Consensus 115 G~~KVvLk~~seeel~~L~~~A~~~gl~~ 143 (181)
+..-+.+.++|.+++.++.+++++.|+..
T Consensus 67 ~~~~l~f~v~d~~dvd~~~~~l~~~G~~i 95 (148)
T 3rhe_A 67 GGMELSFQVNSNEMVDEIHRQWSDKEISI 95 (148)
T ss_dssp -CEEEEEECSCHHHHHHHHHHHHHTTCCE
T ss_pred CeEEEEEEcCCHHHHHHHHHHHHhCCCEE
Confidence 34468999999999999999999999875
No 33
>3i99_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural genomics, center for structural of infectious diseases, csgid; HET: FAD; 2.20A {Vibrio cholerae}
Probab=27.90 E-value=15 Score=32.01 Aligned_cols=41 Identities=24% Similarity=0.284 Sum_probs=33.9
Q ss_pred HHHHhcCCCeEEEecCCHHHHHHHHHHHHhCCCCeEEEEcCC
Q 030232 109 NRWEMCAQPKVVLKIESEEDMLVLQERAKSLKLPTHITIDAG 150 (181)
Q Consensus 109 ~~W~~~G~~KVvLk~~seeel~~L~~~A~~~gl~~~~i~DAG 150 (181)
..|.-.|.+..+++..|.+|+.++.+.|++.++|..+ +=.|
T Consensus 23 tt~~igg~a~~vv~p~s~eel~~~v~~a~~~~ipv~v-lGgG 63 (357)
T 3i99_A 23 HTFGIEQLAAQLVVAESIDDLKALYCSAEWASLPKLI-IGKG 63 (357)
T ss_dssp STTCCSCEEEEEEEECSHHHHHHHHSSSTTTTSCEEE-ESSC
T ss_pred ccCCCCccceEEEEECCHHHHHHHHHHHHHcCCCEEE-ECCC
Confidence 3456678889999999999999999999999999754 4444
No 34
>3iz5_f 60S ribosomal protein L30 (L30E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_f
Probab=27.17 E-value=1.3e+02 Score=21.65 Aligned_cols=70 Identities=11% Similarity=0.088 Sum_probs=44.4
Q ss_pred HHHHHHHHhcCCCeEEEecCCHHH--HHHHHHHHHhCCCCeEEEEcCCCCccC-----CCCeeEEEe--cCCccchhhhc
Q 030232 105 PKALNRWEMCAQPKVVLKIESEED--MLVLQERAKSLKLPTHITIDAGRTQIA-----PNSRTVMAI--LGPVEVVDDVT 175 (181)
Q Consensus 105 ~~~l~~W~~~G~~KVvLk~~seee--l~~L~~~A~~~gl~~~~i~DAG~Tei~-----pgs~TvlAi--pgP~~~id~iT 175 (181)
.+....+.+.|+.|.|+-..|-++ ..++...+...++|++.+.+. ..|+- +-...++|| ||-++.+..+.
T Consensus 31 ~~~t~kai~~gkakLVilA~D~~~~~~~~i~~~c~~~~ipv~~~~~s-~~eLG~A~Gk~~~v~~vaI~D~G~a~~l~~~~ 109 (112)
T 3iz5_f 31 YKTVLKTLRSSLGKLIILANNCPPLRKSEIETYAMLAKISVHHFHGN-NVDLGTACGKYYRVCCLSILDPGDSDIISTTT 109 (112)
T ss_dssp HHHHHHHHHTTCCSEEEECSCCCHHHHHHHHHHHHHTTCCEECCCCT-TCTHHHHHCTTCSSCEEEEECCSCCSHHHHTT
T ss_pred HHHHHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHcCCcEEEeCCC-HHHHHHHhCCccceEEEEEeccchHHHHHhcc
Confidence 345667778899999998877544 456777788999998765111 11110 112355677 78777766543
No 35
>3rja_A Carbohydrate oxidase; protein-substrate analogue complex, FAD binding domain, BERB berberine-like domain, glucooligosaccharide oxidase; HET: FAD NAG ABL TRS; 2.10A {Microdochium nivale} PDB: 3rj8_A*
Probab=26.86 E-value=86 Score=27.78 Aligned_cols=37 Identities=16% Similarity=0.218 Sum_probs=31.9
Q ss_pred cCCCeEEEecCCHHHHHHHHHHHHhCCCCeEEEEcCCC
Q 030232 114 CAQPKVVLKIESEEDMLVLQERAKSLKLPTHITIDAGR 151 (181)
Q Consensus 114 ~G~~KVvLk~~seeel~~L~~~A~~~gl~~~~i~DAG~ 151 (181)
.+.+.+++...+++|+.++.+.|++.|+|.. ++=.|+
T Consensus 34 ~~~p~~vv~P~s~~dv~~~v~~a~~~~~~v~-v~ggGh 70 (473)
T 3rja_A 34 PYIPTAIAQTQTTAHIQSAVQCAKKLNLKVS-AKSGGH 70 (473)
T ss_dssp CCCCSEEEECCSHHHHHHHHHHHHHTTCCEE-EESSCC
T ss_pred CCCCCEEEEeCCHHHHHHHHHHHHHcCCeEE-EEcCCC
Confidence 5788999999999999999999999999865 455565
No 36
>3ct8_A Protein BH2160, putative glyoxalase; NP_243026.1, glyoxalase/bleomycin resis protein/dioxygenase superfamily, structural genomics; HET: UNL; 2.10A {Bacillus halodurans c-125}
Probab=26.67 E-value=73 Score=22.52 Aligned_cols=30 Identities=17% Similarity=0.163 Sum_probs=25.9
Q ss_pred cCCCeEEEecCCHHHHHHHHHHHHhCCCCe
Q 030232 114 CAQPKVVLKIESEEDMLVLQERAKSLKLPT 143 (181)
Q Consensus 114 ~G~~KVvLk~~seeel~~L~~~A~~~gl~~ 143 (181)
.|..-+.+.++|.+++.++.+++++.|+..
T Consensus 85 ~g~~hi~f~v~~~~dv~~~~~~l~~~G~~~ 114 (146)
T 3ct8_A 85 TGLNHLAFHAASREKVDELTQKLKERGDPI 114 (146)
T ss_dssp SSCCEEEEECSCHHHHHHHHHHHHHHTCCB
T ss_pred CCceEEEEECCCHHHHHHHHHHHHHcCCcc
Confidence 355679999999999999999999999864
No 37
>3on1_A BH2414 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; HET: MSE; 1.65A {Bacillus halodurans}
Probab=25.59 E-value=1.7e+02 Score=20.20 Aligned_cols=63 Identities=13% Similarity=0.188 Sum_probs=41.2
Q ss_pred HHHHHHHHhcCCCeEEEecCCHH--HHHHHHHHHHhCCCCeEEEEcCCCCccC----CCCeeEEEe--cCCcc
Q 030232 105 PKALNRWEMCAQPKVVLKIESEE--DMLVLQERAKSLKLPTHITIDAGRTQIA----PNSRTVMAI--LGPVE 169 (181)
Q Consensus 105 ~~~l~~W~~~G~~KVvLk~~see--el~~L~~~A~~~gl~~~~i~DAG~Tei~----pgs~TvlAi--pgP~~ 169 (181)
-+....+.+.|+.+.|+-..|-+ ....+...++..++|++.+-+. .|+- -...+++|| ||-++
T Consensus 23 ~~~v~kai~~gka~lViiA~D~~~~~~~~i~~~c~~~~ip~~~~~s~--~eLG~a~Gk~~~~~vai~d~g~a~ 93 (101)
T 3on1_A 23 EEQVVKAVQNGQVTLVILSSDAGIHTKKKLLDKCGSYQIPVKVVGNR--QMLGRAIGKHERVVIGVKDAGFSR 93 (101)
T ss_dssp HHHHHHHHHTTCCSEEEEETTSCHHHHHHHHHHHHHHTCCEEEESCH--HHHHHHTTSSCCSEEEECCHHHHH
T ss_pred HHHHHHHHHcCCCcEEEEeCCCCHHHHHHHHHHHHHcCCCEEEeCCH--HHHHHHhCCcCeEEEEEECccHHH
Confidence 34567778889999999988754 4566777788899998865321 1110 114567888 45443
No 38
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=24.91 E-value=89 Score=28.92 Aligned_cols=40 Identities=18% Similarity=0.083 Sum_probs=32.2
Q ss_pred HHHHHHHHh--cCCCeEEEecCCHHHHHHHHHHHHhCCCCeE
Q 030232 105 PKALNRWEM--CAQPKVVLKIESEEDMLVLQERAKSLKLPTH 144 (181)
Q Consensus 105 ~~~l~~W~~--~G~~KVvLk~~seeel~~L~~~A~~~gl~~~ 144 (181)
++++..|.. ...+.+|+.-.|++|..++.+.|.+.|+|..
T Consensus 192 ~d~~~~~~g~~~~~P~aVV~P~s~eeV~~iv~~A~~~~ipVv 233 (658)
T 4bby_A 192 HEIFLLREGMFERIPDIVLWPTCHDDVVKIVNLACKYNLCII 233 (658)
T ss_dssp HHHHHHHSSCCSCCCSEEEECCSHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHhCCcccCCcCEEEeeCCHHHHHHHHHHHHHCCCeEE
Confidence 455565632 4568899999999999999999999999754
No 39
>3szu_A ISPH, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; 3Fe-4S iron-sulfur cluster, conserved cysteine, IPP and DMAP production final STEP; HET: H6P; 1.40A {Escherichia coli} PDB: 3szl_A* 3f7t_A* 3szo_A* 3t0f_A* 3t0g_A* 3urk_A* 3utc_A* 3utd_A* 3uv3_A* 3uv6_A* 3uv7_A* 3uwm_A* 3ke8_A* 3ke9_A* 3kef_A* 3kel_A 3kem_A*
Probab=24.10 E-value=21 Score=31.18 Aligned_cols=60 Identities=20% Similarity=0.238 Sum_probs=41.1
Q ss_pred CeEEEecCCHHHHHHHHHHHHhCCCCeEEEEcCCCCccCCC---CeeEEEe-cC---CccchhhhcCCC
Q 030232 117 PKVVLKIESEEDMLVLQERAKSLKLPTHITIDAGRTQIAPN---SRTVMAI-LG---PVEVVDDVTGGL 178 (181)
Q Consensus 117 ~KVvLk~~seeel~~L~~~A~~~gl~~~~i~DAG~Tei~pg---s~TvlAi-pg---P~~~id~iTg~L 178 (181)
--+|+..++-..=.+|++-|++.|.+++.|-++. ++.|. ....+|| -| |...|+++...|
T Consensus 228 ~miVVGg~nSSNT~rL~eia~~~g~~ty~Ie~~~--el~~~wl~g~~~VGITAGASTP~~lieeVi~~l 294 (328)
T 3szu_A 228 VVLVVGSKNSSNSNRLAELAQRMGKRAFLIDDAK--DIQEEWVKEVKCVGVTAGASAPDILVQNVVARL 294 (328)
T ss_dssp EEEEECCTTCHHHHHHHHHHHHTTCEEEEESSGG--GCCHHHHTTCSEEEEEECTTCCHHHHHHHHHHH
T ss_pred EEEEeCCCCCchHHHHHHHHHHhCCCEEEeCChH--HCCHHHhCCCCEEEEeecCCCCHHHHHHHHHHH
Confidence 3567777777778899999999999999987765 56542 2334566 45 666666665433
No 40
>2rk0_A Glyoxalase/bleomycin resistance protein/dioxygena; 11002Z, glyoxylase, dioxygenas PSI-II; 2.04A {Frankia SP}
Probab=24.03 E-value=67 Score=21.96 Aligned_cols=29 Identities=24% Similarity=0.260 Sum_probs=24.8
Q ss_pred CCCeEEEecCCHHHHHHHHHHHHhCCCCe
Q 030232 115 AQPKVVLKIESEEDMLVLQERAKSLKLPT 143 (181)
Q Consensus 115 G~~KVvLk~~seeel~~L~~~A~~~gl~~ 143 (181)
|..-+.+.++|.+++.++.+++++.|+..
T Consensus 72 g~~h~~f~v~~~~d~~~~~~~l~~~G~~~ 100 (136)
T 2rk0_A 72 GLDHLSFSVESMTDLDVLEERLAKAGAAF 100 (136)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHHHHTCCB
T ss_pred CcceEEEEeCCHHHHHHHHHHHHHCCCcc
Confidence 44468899999999999999999999864
No 41
>3sk2_A EHPR; antibiotic resistance, griseoluteate-binding protein; HET: GRI; 1.01A {Pantoea agglomerans} PDB: 3sk1_A*
Probab=23.62 E-value=92 Score=21.22 Aligned_cols=29 Identities=10% Similarity=0.070 Sum_probs=24.8
Q ss_pred CCCeEEEecCCHHHHHHHHHHHHh---CCCCe
Q 030232 115 AQPKVVLKIESEEDMLVLQERAKS---LKLPT 143 (181)
Q Consensus 115 G~~KVvLk~~seeel~~L~~~A~~---~gl~~ 143 (181)
+..-+.+.++|.++++++.+++++ .|+..
T Consensus 72 ~~~~~~~~v~~~~dv~~~~~~l~~~~~~G~~~ 103 (132)
T 3sk2_A 72 RFSEIGIMLPTGEDVDKLFNEWTKQKSHQIIV 103 (132)
T ss_dssp CCEEEEEEESSHHHHHHHHHHHHHCSSSCCEE
T ss_pred CcceEEEEeCCHHHHHHHHHHHHhhhcCCCEE
Confidence 444589999999999999999999 99854
No 42
>2aif_A Ribosomal protein L7A; high-mobility like protein, transcription factor, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum} SCOP: d.79.3.1
Probab=23.44 E-value=97 Score=22.93 Aligned_cols=44 Identities=14% Similarity=0.073 Sum_probs=34.1
Q ss_pred HHHHHHHHhcCCCeEEEecCCHHH--H-HHHHHHHHhCCCCeEEEEc
Q 030232 105 PKALNRWEMCAQPKVVLKIESEED--M-LVLQERAKSLKLPTHITID 148 (181)
Q Consensus 105 ~~~l~~W~~~G~~KVvLk~~seee--l-~~L~~~A~~~gl~~~~i~D 148 (181)
-+....+.+.|+.+.|+-..|-++ . ..+...++..++|++.+-+
T Consensus 46 ~~~v~kal~~gkaklViiA~D~~~~~~~~~l~~lc~~~~IP~~~v~s 92 (135)
T 2aif_A 46 ANEATKALNRGIAEIVLLAADAEPLEILLHLPLVCEDKNTPYVFVRS 92 (135)
T ss_dssp HHHHHHHHHTTCEEEEEEETTCSCHHHHHHHHHHHHHTTCCEEEESC
T ss_pred HHHHHHHHHcCCCeEEEEecCCChHHHHhHHHHHHHhcCCcEEEECC
Confidence 356777888899999998876543 3 7788889999999987643
No 43
>4gqr_A Pancreatic alpha-amylase; glycosyl hydrolase, diabetes, obesity, digestion, glycosidas inhibition, flavonol, drug design; HET: NAG MYC; 1.20A {Homo sapiens} PDB: 1cpu_A* 1bsi_A 1u2y_A* 1u30_A* 1u33_A* 1xcw_A* 1xcx_A* 1xd0_A* 1xd1_A* 2qmk_A* 2qv4_A* 3bai_A* 3baj_A* 3baw_A* 3ij7_A* 1hny_A* 3ij9_A* 3ij8_A* 4gqq_A* 1kgw_A* ...
Probab=23.15 E-value=66 Score=27.21 Aligned_cols=29 Identities=17% Similarity=0.360 Sum_probs=22.9
Q ss_pred EEEecCCHHHHHHHHHHHHhCCCCeEEEEcC
Q 030232 119 VVLKIESEEDMLVLQERAKSLKLPTHITIDA 149 (181)
Q Consensus 119 VvLk~~seeel~~L~~~A~~~gl~~~~i~DA 149 (181)
|-=+--+.++|.+|.++|+++|| .+|.|.
T Consensus 69 i~~~~Gt~~df~~lv~~aH~~Gi--~VilD~ 97 (496)
T 4gqr_A 69 LCTRSGNEDEFRNMVTRCNNVGV--RIYVDA 97 (496)
T ss_dssp SCBTTBCHHHHHHHHHHHHHTTC--EEEEEE
T ss_pred eCCCCCCHHHHHHHHHHHHHCCC--EEEEEE
Confidence 33345578999999999999998 566674
No 44
>3r4q_A Lactoylglutathione lyase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.51A {Agrobacterium tumefaciens}
Probab=21.52 E-value=74 Score=22.81 Aligned_cols=30 Identities=13% Similarity=0.286 Sum_probs=26.2
Q ss_pred CCCeEEEecCCHHHHHHHHHHHHhCCCCeE
Q 030232 115 AQPKVVLKIESEEDMLVLQERAKSLKLPTH 144 (181)
Q Consensus 115 G~~KVvLk~~seeel~~L~~~A~~~gl~~~ 144 (181)
|..-+.+.+++.+++.++.+++++.|+...
T Consensus 76 g~~hi~f~V~~~~dld~~~~~l~~~G~~~~ 105 (160)
T 3r4q_A 76 GQGHFCFYADDKAEVDEWKTRFEALEIPVE 105 (160)
T ss_dssp EECEEEEEESSHHHHHHHHHHHHTTTCCCC
T ss_pred ceeEEEEEeCCHHHHHHHHHHHHHCCCEEe
Confidence 446799999999999999999999998754
No 45
>3u5e_c L32, RP73, YL38, 60S ribosomal protein L30; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_f 3izs_f 3o58_Z 3o5h_Z 1t0k_B 3u5i_c 4b6a_c 1ck2_A 1cn7_A 1nmu_B* 3jyw_2
Probab=20.81 E-value=2.2e+02 Score=19.84 Aligned_cols=68 Identities=13% Similarity=0.064 Sum_probs=41.4
Q ss_pred HHHHHHHHhcCCCeEEEecCCHH--HHHHHHHHHHhCCCCeEEEEcCCCCcc--CCC---CeeEEEe--cCCccchhh
Q 030232 105 PKALNRWEMCAQPKVVLKIESEE--DMLVLQERAKSLKLPTHITIDAGRTQI--APN---SRTVMAI--LGPVEVVDD 173 (181)
Q Consensus 105 ~~~l~~W~~~G~~KVvLk~~see--el~~L~~~A~~~gl~~~~i~DAG~Tei--~pg---s~TvlAi--pgP~~~id~ 173 (181)
.+....+.+.|+.|.|+-..|-+ ...++...++..++|++...+. +.|+ +=| ...++|| ||-++.+..
T Consensus 27 ~~~v~kai~~gkaklVilA~D~~~~~~~~i~~~c~~~~ip~~~~~~s-~~eLG~A~Gk~~~~~~vaI~D~G~a~~l~~ 103 (105)
T 3u5e_c 27 YKSTVKSLRQGKSKLIIIAANTPVLRKSELEYYAMLSKTKVYYFQGG-NNELGTAVGKLFRVGVVSILEAGDSDILTT 103 (105)
T ss_dssp HHHHHHHHHTTCCSEEEECTTSCHHHHHHHHHHHHHHTCEEEECSSC-HHHHHHHTTCSSCCSEEEEEECCSCCTTTT
T ss_pred HHHHHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHcCCCEEEeCCC-HHHHHHHhCCcccEEEEEEeccchHHHHHh
Confidence 34566778889999999887754 4456666777889987642211 1111 011 2346777 777666554
No 46
>2c2n_A Malonyl COA-acyl carrier protein transacylase; fatty acid synthase, lipid synthesis, mitochondrion transfer transferase; HET: AE4; 1.55A {Homo sapiens}
Probab=20.27 E-value=45 Score=28.16 Aligned_cols=93 Identities=14% Similarity=0.059 Sum_probs=44.5
Q ss_pred CCCCcchhhhHhhHHHHH---HHHHHHhhCHHHHHHHHhcCCCeEEEecCCHHHHHHHHHHHHh----CCC---CeEEEE
Q 030232 78 LKMGKGKIAAQCSHATLG---LYKKVLYRAPKALNRWEMCAQPKVVLKIESEEDMLVLQERAKS----LKL---PTHITI 147 (181)
Q Consensus 78 L~Ms~GKiAAQ~aHAal~---~~~~~~~~~~~~l~~W~~~G~~KVvLk~~seeel~~L~~~A~~----~gl---~~~~i~ 147 (181)
+|-|.|.++|-|+=.++. +.+....+..-.-+.|....-.-..+...+++++.++.++++. .|+ ...+-.
T Consensus 114 ~GHSlGE~aAa~~AG~ls~edal~lv~~Rg~lm~~~~~~~~g~M~aV~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iA~ 193 (339)
T 2c2n_A 114 AGFSVGEFAALVFAGAMEFAEGLYAVKIRAEAMQEASEAVPSGMLSVLGQPQSKFNFACLEAREHCKSLGIENPVCEVSN 193 (339)
T ss_dssp EECTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHTSCEEEEEEECCTTCCHHHHHHHHHHHHHHTTCSSCCEEEEE
T ss_pred ccCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHhccCCCCcEEEEeCCcHHHHHHHHHHHHHhhhhccCCCCeEEEEE
Confidence 388999999887533221 1111111111111223322223456666666667777665432 222 122222
Q ss_pred cCCCCccCCCCeeEEEecCCccchhhhcCCC
Q 030232 148 DAGRTQIAPNSRTVMAILGPVEVVDDVTGGL 178 (181)
Q Consensus 148 DAG~Tei~pgs~TvlAipgP~~~id~iTg~L 178 (181)
..+ | .-+||+ |+.+.|+.+...|
T Consensus 194 ~Ns-----p-~~~Vis--G~~~~l~~l~~~l 216 (339)
T 2c2n_A 194 YLF-----P-DCRVIS--GHQEALRFLQKNS 216 (339)
T ss_dssp EEE-----T-TEEEEE--EEHHHHHHHHHTG
T ss_pred EcC-----C-CCEEEE--CCHHHHHHHHHHH
Confidence 212 1 334555 7777777766554
Done!