BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030233
(181 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
pdb|3AQ4|B Chain B, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
Length = 184
Score = 263 bits (671), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 124/180 (68%), Positives = 148/180 (82%)
Query: 1 MGKLISRLAKRFFPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKN 60
MG +L R F + +++LMVGLDA+GKTTILYK+KLGEIVTT PTIGFNVE VEYKN
Sbjct: 4 MGLSFGKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 63
Query: 61 KSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAA 120
SF VWDVGGQ+KIR LWRHYF++T GL FVVDS+DR+R+ EAR+ELH++L+++EL +A
Sbjct: 64 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 123
Query: 121 LLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNISVK 180
LLVFANKQDLPN M AE+ DKL L+SL QR W IQS A SG+GLYEGLDWLSNNI+ K
Sbjct: 124 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 183
>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1RRG|B Chain B, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1R8Q|A Chain A, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1R8Q|B Chain B, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1RRF|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Monomeric Crystal Form
Length = 181
Score = 251 bits (642), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 119/177 (67%), Positives = 143/177 (80%)
Query: 1 MGKLISRLAKRFFPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKN 60
MG + + L K F + +++LMVGLDA+GKTTILYK+KLGEIVTT PTIGFNVE VEYKN
Sbjct: 1 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 61 KSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAA 120
SF VWDVGGQ+KIR LWRHYF++T GL FVVDS+DRER++EAR EL ++L+++EL +A
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV 120
Query: 121 LLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNI 177
LLVFANKQDLPN M AE+ DKL L+SL R W IQ+ A SG GLYEGLDWLSN +
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 177
>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
pdb|1HUR|B Chain B, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
Length = 180
Score = 249 bits (636), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 118/176 (67%), Positives = 142/176 (80%)
Query: 2 GKLISRLAKRFFPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNK 61
G + + L K F + +++LMVGLDA+GKTTILYK+KLGEIVTT PTIGFNVE VEYKN
Sbjct: 1 GNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI 60
Query: 62 SFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAAL 121
SF VWDVGGQ+KIR LWRHYF++T GL FVVDS+DRER++EAR EL ++L+++EL +A L
Sbjct: 61 SFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVL 120
Query: 122 LVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNI 177
LVFANKQDLPN M AE+ DKL L+SL R W IQ+ A SG GLYEGLDWLSN +
Sbjct: 121 LVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 176
>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With
Brefeldin A
pdb|1R8S|A Chain A, Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain Carrying
The Mutation Of The Catalytic Glutamate To Lysine
pdb|1S9D|A Chain A, Arf1[delta 1-17]-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1U81|A Chain A, Delta-17 Human Adp Ribosylation Factor 1 Complexed With
Gdp
Length = 164
Score = 243 bits (619), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 114/160 (71%), Positives = 135/160 (84%)
Query: 18 IKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRAL 77
+++LMVGLDA+GKTTILYK+KLGEIVTT PTIGFNVE VEYKN SF VWDVGGQ+KIR L
Sbjct: 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL 60
Query: 78 WRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTA 137
WRHYF++T GL FVVDS+DRER++EAR EL ++L+++EL +A LLVFANKQDLPN M A
Sbjct: 61 WRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAA 120
Query: 138 EVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNI 177
E+ DKL L+SL R W IQ+ A SG GLYEGLDWLSN +
Sbjct: 121 EITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 160
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 242 bits (618), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 115/166 (69%), Positives = 137/166 (82%)
Query: 12 FFPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQ 71
F + +++LMVGLDA+GKTTILYK+KLGEIVTT PTIGFNVE VEYKN SF VWDVGGQ
Sbjct: 160 LFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQ 219
Query: 72 NKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLP 131
+KIR LWRHYF++T GL FVVDS+DRER++EAR EL ++L+++EL +A LLVFANKQDLP
Sbjct: 220 DKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLP 279
Query: 132 NVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNI 177
N M AE+ DKL L+SL R W IQ+ A SG GLYEGLDWLSN +
Sbjct: 280 NAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 325
>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum
Adp-Ribosylation Factor 1
Length = 181
Score = 242 bits (617), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 111/178 (62%), Positives = 141/178 (79%)
Query: 1 MGKLISRLAKRFFPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKN 60
MG +SRL R F + +++LMVGLDA+GKTTILYK+KLGE+VTT PTIGFNVE VE++N
Sbjct: 1 MGLYVSRLFNRLFQKKDVRILMVGLDAAGKTTILYKVKLGEVVTTIPTIGFNVETVEFRN 60
Query: 61 KSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAA 120
SF VWDVGGQ+KIR LWRHY+ +T GL FVVDS+DRERI +AR ELH+++++ EL +A
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYYSNTDGLIFVVDSNDRERIDDAREELHRMINEEELKDAI 120
Query: 121 LLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNIS 178
+LVFANKQDLPN M AEV +KL L ++ +R W IQS A G GLYEG DWL+ +++
Sbjct: 121 ILVFANKQDLPNAMSAAEVTEKLHLNTIRERNWFIQSTCATRGDGLYEGFDWLTTHLN 178
>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex
With Arf1 Gtp Form
pdb|1O3Y|A Chain A, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|1O3Y|B Chain B, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|2J59|A Chain A, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|B Chain B, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|C Chain C, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|D Chain D, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|E Chain E, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|F Chain F, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
Length = 166
Score = 239 bits (611), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 113/160 (70%), Positives = 134/160 (83%)
Query: 18 IKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRAL 77
+++LMVGLDA+GKTTILYK+KLGEIVTT PTIGFNVE VEYKN SF VWDVGG +KIR L
Sbjct: 3 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGLDKIRPL 62
Query: 78 WRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTA 137
WRHYF++T GL FVVDS+DRER++EAR EL ++L+++EL +A LLVFANKQDLPN M A
Sbjct: 63 WRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAA 122
Query: 138 EVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNI 177
E+ DKL L+SL R W IQ+ A SG GLYEGLDWLSN +
Sbjct: 123 EITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 162
>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4
pdb|1Z6X|B Chain B, Structure Of Human Adp-Ribosylation Factor 4
Length = 180
Score = 238 bits (607), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 114/178 (64%), Positives = 138/178 (77%)
Query: 1 MGKLISRLAKRFFPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKN 60
MG IS L R F + ++++LMVGLDA+GKTTILYK+KLGEIVTT PTIGFNVE VEYKN
Sbjct: 1 MGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 61 KSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAA 120
F VWDVGGQ++IR LW+HYF++T GL FVVDS+DRERI E +EL ++L +EL +A
Sbjct: 61 ICFTVWDVGGQDRIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELRDAV 120
Query: 121 LLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNIS 178
LL+FANKQDLPN M +E+ DKL L SL R W +Q+ A G GLYEGLDWLSN +S
Sbjct: 121 LLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNELS 178
>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5
Length = 192
Score = 236 bits (601), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 109/171 (63%), Positives = 136/171 (79%)
Query: 8 LAKRFFPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWD 67
L R F + ++++LMVGLDA+GKTTILYK+KLGEIVTT PTIGFNVE VEYKN F VWD
Sbjct: 20 LFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWD 79
Query: 68 VGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANK 127
VGGQ+KIR LWRHYF++T GL FVVDS+DRER+ E+ +EL ++L ++EL +A LLVFANK
Sbjct: 80 VGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANK 139
Query: 128 QDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNIS 178
QD+PN MP +E+ DKL L L R W +Q+ A G GLY+GLDWLS+ +S
Sbjct: 140 QDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELS 190
>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2
(Scarf2) Complexed With Gdp-3'p At 1.6a Resolution
Length = 181
Score = 234 bits (596), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 107/177 (60%), Positives = 138/177 (77%)
Query: 1 MGKLISRLAKRFFPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKN 60
MG S+L F +++LMVGLD +GKTT+LYK+KLGE++TT PTIGFNVE V+YKN
Sbjct: 1 MGLYASKLFSNLFGNKEMRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVETVQYKN 60
Query: 61 KSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAA 120
SF VWDVGGQ++IR+LWRHY+R+T G+ FV+DS+DR RI EAR + ++L+++EL NA
Sbjct: 61 ISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVIDSNDRSRIGEAREVMQRMLNEDELRNAV 120
Query: 121 LLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNI 177
LVFANKQDLP M AE+ +KL L+S+ R W IQS A SG+GLYEGL+WLSNN+
Sbjct: 121 WLVFANKQDLPEAMSAAEITEKLGLHSIRNRPWFIQSTCATSGEGLYEGLEWLSNNL 177
>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein,
Gdp- Bound
Length = 181
Score = 231 bits (590), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 109/180 (60%), Positives = 140/180 (77%), Gaps = 2/180 (1%)
Query: 2 GKLISRLAKRFFPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNK 61
G S+L F +++LMVGLD +GKTT+LYK+KLGE++TT PTIGFNVE V+YKN
Sbjct: 2 GLFASKLFSNLFGNKEMRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVETVQYKNI 61
Query: 62 SFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAAL 121
SF VWDVGGQ++IR+LWRHY+R+T G+ FVVDS+DR RI EAR + ++L+++EL NAA
Sbjct: 62 SFTVWDVGGQDRIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAW 121
Query: 122 LVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNISVKN 181
LVFANKQDLP M AE+ +KL L+S+ R W IQ+ A SG+GLYEGL+WLSN S+KN
Sbjct: 122 LVFANKQDLPEAMSAAEITEKLGLHSIRNRPWFIQATCATSGEGLYEGLEWLSN--SLKN 179
>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
pdb|3TJZ|D Chain D, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
Length = 164
Score = 227 bits (578), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 105/164 (64%), Positives = 135/164 (82%), Gaps = 2/164 (1%)
Query: 18 IKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRAL 77
+++LMVGLD +GKTT+LYK+KLGE++TT PTIGFNVE V+YKN SF VWDVGGQ++IR+L
Sbjct: 1 MRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVETVQYKNISFTVWDVGGQDRIRSL 60
Query: 78 WRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTA 137
WRHY+R+T G+ FVVDS+DR RI EAR + ++L+++EL NAA LVFANKQDLP M A
Sbjct: 61 WRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVFANKQDLPEAMSAA 120
Query: 138 EVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNISVKN 181
E+ +KL L+S+ R W IQ+ A SG+GLYEGL+WLSN S+KN
Sbjct: 121 EITEKLGLHSIRNRPWFIQATCATSGEGLYEGLEWLSN--SLKN 162
>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
pdb|3RD1|B Chain B, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
Length = 178
Score = 224 bits (571), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 106/177 (59%), Positives = 138/177 (77%), Gaps = 4/177 (2%)
Query: 1 MGKLISRLAKRFFPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKN 60
MG +S+L + +++LMVGLDA+GKT+ILYK+KLGEIVTT PTIGFNVE VEYKN
Sbjct: 5 MGSWLSKL----LGKKEMRILMVGLDAAGKTSILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 61 KSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAA 120
SF VWDVGGQ+KIR LWRHY+++T + FVVDS+DR+RI EAR EL ++L+++E+ NA
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYYQNTQAIIFVVDSNDRDRIGEAREELMKMLNEDEMRNAI 120
Query: 121 LLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNI 177
LLVFANK DLP M +EV +KL L ++ R+W Q+ A +G GLYEGLDWL++N+
Sbjct: 121 LLVFANKHDLPQAMSISEVTEKLGLQTIKNRKWYCQTSCATNGDGLYEGLDWLADNL 177
>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound
Conformation
Length = 181
Score = 224 bits (570), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 104/174 (59%), Positives = 134/174 (77%)
Query: 2 GKLISRLAKRFFPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNK 61
G S+L F +++LMVGLD +GKTT+LYK+KLGE++TT PTIGFNVE V+Y N
Sbjct: 2 GLFASKLFSNLFGNKEMRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVECVQYCNI 61
Query: 62 SFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAAL 121
SF VWDVGGQ++IR+LWRHY+ +T G+ FVVDS+DR RI EAR + ++L+++EL NAA
Sbjct: 62 SFTVWDVGGQDRIRSLWRHYYCNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELCNAAW 121
Query: 122 LVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSN 175
LVFANKQDLP M AE+ +KL L+S+ R W IQ+ A SG+GLYEGL+WLSN
Sbjct: 122 LVFANKQDLPEAMSAAEITEKLGLHSIRNRPWFIQATCATSGEGLYEGLEWLSN 175
>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By
Human Arf6-Gtp
pdb|2A5F|A Chain A, Cholera Toxin A1 Subunit Bound To Its Substrate, Nad+, And
Its Human Protein Activator, Arf6
pdb|2J5X|A Chain A, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
pdb|2J5X|B Chain B, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
Length = 175
Score = 218 bits (555), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 102/176 (57%), Positives = 132/176 (75%), Gaps = 4/176 (2%)
Query: 1 MGKLISRLAKRFFPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKN 60
MGK++S++ F +++LM+GLDA+GKTTILYK+KLG+ VTT PT+GFNVE V YKN
Sbjct: 1 MGKVLSKI----FGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKN 56
Query: 61 KSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAA 120
F VWDVGGQ+KIR LWRHY+ T GL FVVD +DR+RI EAR ELH+I++D E+ +A
Sbjct: 57 VKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI 116
Query: 121 LLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNN 176
+L+FANKQDLP+ M E+ +KL L + R W +Q A SG GLYEGL WL++N
Sbjct: 117 ILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSN 172
>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp
Length = 174
Score = 216 bits (549), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 101/175 (57%), Positives = 131/175 (74%), Gaps = 4/175 (2%)
Query: 2 GKLISRLAKRFFPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNK 61
GK++S++ F +++LM+GLDA+GKTTILYK+KLG+ VTT PT+GFNVE V YKN
Sbjct: 1 GKVLSKI----FGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNV 56
Query: 62 SFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAAL 121
F VWDVGGQ+KIR LWRHY+ T GL FVVD +DR+RI EAR ELH+I++D E+ +A +
Sbjct: 57 KFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAII 116
Query: 122 LVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNN 176
L+FANKQDLP+ M E+ +KL L + R W +Q A SG GLYEGL WL++N
Sbjct: 117 LIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSN 171
>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l)
Length = 175
Score = 215 bits (547), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 101/176 (57%), Positives = 131/176 (74%), Gaps = 4/176 (2%)
Query: 1 MGKLISRLAKRFFPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKN 60
MGK++S++ F +++LM+GLDA+GKTTILYK+KLG+ VTT PT+GFNVE V YKN
Sbjct: 1 MGKVLSKI----FGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKN 56
Query: 61 KSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAA 120
F VWDVGG +KIR LWRHY+ T GL FVVD +DR+RI EAR ELH+I++D E+ +A
Sbjct: 57 VKFNVWDVGGLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI 116
Query: 121 LLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNN 176
+L+FANKQDLP+ M E+ +KL L + R W +Q A SG GLYEGL WL++N
Sbjct: 117 ILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSN 172
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 214 bits (544), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 98/163 (60%), Positives = 124/163 (76%)
Query: 18 IKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRAL 77
+++LM+GLDA+GKTTILYK+KLG+ VTT PT+GFNVE V YKN F VWDVGGQ+KIR L
Sbjct: 323 MRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPL 382
Query: 78 WRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTA 137
WRHY+ T GL FVVD +DR+RI EAR ELH+I++D E+ +A +L+FANKQDLP+ M
Sbjct: 383 WRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPH 442
Query: 138 EVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNISVK 180
E+ +KL L + R W +Q A SG GLYEGL WL++N K
Sbjct: 443 EIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYKSK 485
>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp
pdb|3N5C|B Chain B, Crystal Structure Of Arf6delta13 Complexed With Gdp
Length = 162
Score = 213 bits (541), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 97/159 (61%), Positives = 123/159 (77%)
Query: 18 IKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRAL 77
+++LM+GLDA+GKTTILYK+KLG+ VTT PT+GFNVE V YKN F VWDVGGQ+KIR L
Sbjct: 1 MRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPL 60
Query: 78 WRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTA 137
WRHY+ T GL FVVD +DR+RI EAR ELH+I++D E+ +A +L+FANKQDLP+ M
Sbjct: 61 WRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPH 120
Query: 138 EVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNN 176
E+ +KL L + R W +Q A SG GLYEGL WL++N
Sbjct: 121 EIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSN 159
>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex
pdb|4FME|F Chain F, Espg-Rab1-Arf6 Complex
Length = 160
Score = 213 bits (541), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 97/159 (61%), Positives = 123/159 (77%)
Query: 18 IKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRAL 77
+++LM+GLDA+GKTTILYK+KLG+ VTT PT+GFNVE V YKN F VWDVGGQ+KIR L
Sbjct: 1 MRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPL 60
Query: 78 WRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTA 137
WRHY+ T GL FVVD +DR+RI EAR ELH+I++D E+ +A +L+FANKQDLP+ M
Sbjct: 61 WRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPH 120
Query: 138 EVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNN 176
E+ +KL L + R W +Q A SG GLYEGL WL++N
Sbjct: 121 EIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSN 159
>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|C Chain C, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|E Chain E, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|G Chain G, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
Length = 172
Score = 209 bits (533), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 96/159 (60%), Positives = 122/159 (76%)
Query: 18 IKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRAL 77
+++LM+GLDA+GKTTILYK+KLG+ VTT PT+GFNVE V YKN F VWDVGG +KIR L
Sbjct: 3 MRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGLDKIRPL 62
Query: 78 WRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTA 137
WRHY+ T GL FVVD +DR+RI EAR ELH+I++D E+ +A +L+FANKQDLP+ M
Sbjct: 63 WRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPH 122
Query: 138 EVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNN 176
E+ +KL L + R W +Q A SG GLYEGL WL++N
Sbjct: 123 EIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSN 161
>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|B Chain B, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|E Chain E, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
Length = 165
Score = 209 bits (533), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 96/159 (60%), Positives = 122/159 (76%)
Query: 18 IKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRAL 77
+++LM+GLDA+GKTTILYK+KLG+ VTT PT+GFNVE V YKN F VWDVGG +KIR L
Sbjct: 4 MRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGLDKIRPL 63
Query: 78 WRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTA 137
WRHY+ T GL FVVD +DR+RI EAR ELH+I++D E+ +A +L+FANKQDLP+ M
Sbjct: 64 WRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPH 123
Query: 138 EVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNN 176
E+ +KL L + R W +Q A SG GLYEGL WL++N
Sbjct: 124 EIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSN 162
>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex
Length = 162
Score = 206 bits (523), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 95/158 (60%), Positives = 119/158 (75%)
Query: 19 KLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALW 78
++L +GLDA+GKTTILYK+KLG+ VTT PT+GFNVE V YKN F VWDVGGQ+KIR LW
Sbjct: 2 RILXLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLW 61
Query: 79 RHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAE 138
RHY+ T GL FVVD +DR+RI EAR ELH+I++D E +A +L+FANKQDLP+ E
Sbjct: 62 RHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREXRDAIILIFANKQDLPDAXKPHE 121
Query: 139 VADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNN 176
+ +KL L + R W +Q A SG GLYEGL WL++N
Sbjct: 122 IQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSN 159
>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
pdb|1MOZ|B Chain B, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
Length = 183
Score = 193 bits (491), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 91/178 (51%), Positives = 126/178 (70%), Gaps = 1/178 (0%)
Query: 1 MGKLISRLAKRFFPQCR-IKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYK 59
MG + S + + + + +++L++GLD +GKTTILY++++GE+VTT PTIGFNVE + YK
Sbjct: 1 MGNIFSSMFDKLWGSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYK 60
Query: 60 NKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNA 119
N VWD+GGQ IR WR Y+ DT + FVVDS+D++R+S A ELH +L + EL +A
Sbjct: 61 NLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDA 120
Query: 120 ALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNI 177
ALLVFANKQD P + +EV+ +L L L R WSI + SAI G+G+ EGLDWL + I
Sbjct: 121 ALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVI 178
>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5
pdb|1Z6Y|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5
Length = 179
Score = 172 bits (437), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 80/180 (44%), Positives = 122/180 (67%), Gaps = 1/180 (0%)
Query: 1 MGKLISRLAKRFFPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKN 60
MG L +R+ R F K+++VGLD +GKTTILY+ + E+V T+PTIG NVE + N
Sbjct: 1 MGILFTRIW-RLFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINN 59
Query: 61 KSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAA 120
F +WD+GGQ +R+ W Y+ +T + VVDS+DRERIS R EL+++L+ +L A
Sbjct: 60 TRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAG 119
Query: 121 LLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNISVK 180
LL+FANKQD+ M AE++ L+L S+ +W IQ+C A++G+GL +GL+W+ + + ++
Sbjct: 120 LLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLKIR 179
>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5
Length = 187
Score = 172 bits (437), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 80/180 (44%), Positives = 122/180 (67%), Gaps = 1/180 (0%)
Query: 1 MGKLISRLAKRFFPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKN 60
MG L +R+ R F K+++VGLD +GKTTILY+ + E+V T+PTIG NVE + N
Sbjct: 1 MGILFTRIW-RLFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINN 59
Query: 61 KSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAA 120
F +WD+GGQ +R+ W Y+ +T + VVDS+DRERIS R EL+++L+ +L A
Sbjct: 60 TRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAG 119
Query: 121 LLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNISVK 180
LL+FANKQD+ M AE++ L+L S+ +W IQ+C A++G+GL +GL+W+ + + ++
Sbjct: 120 LLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLKIR 179
>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|B Chain B, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|C Chain C, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|D Chain D, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
Length = 165
Score = 171 bits (434), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 80/160 (50%), Positives = 112/160 (70%)
Query: 18 IKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRAL 77
+++L++GLD +GKTTILY++++GE+VTT PTIGFNVE V YKN F VWD+GGQ IR
Sbjct: 3 MRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPY 62
Query: 78 WRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTA 137
WR Y+ +T + +VVDS DR+RI +++EL +L + EL A L+VFANKQD+ M +
Sbjct: 63 WRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTPS 122
Query: 138 EVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNI 177
E+A+ L L +L R+W I SA G GL E ++WL +
Sbjct: 123 EMANALGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETL 162
>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8
Length = 179
Score = 170 bits (430), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 80/180 (44%), Positives = 122/180 (67%), Gaps = 1/180 (0%)
Query: 1 MGKLISRLAKRFFPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKN 60
MG + ++L F Q K+++VGLD +GKTTILY+ + E+V T+PTIG NVE + KN
Sbjct: 1 MGLIFAKLWSLFCNQ-EHKVIIVGLDNAGKTTILYQFLMNEVVHTSPTIGSNVEEIVVKN 59
Query: 61 KSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAA 120
F +WD+GGQ +R+ W Y+ +T + VVDS DRER++ + EL+++L+ +L AA
Sbjct: 60 THFLMWDIGGQESLRSSWNTYYSNTEFIILVVDSIDRERLAITKEELYRMLAHEDLRKAA 119
Query: 121 LLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNISVK 180
+L+FANKQD+ M AE++ L L S+ W IQSC A++G+GL +GL+W+++ I V+
Sbjct: 120 VLIFANKQDMKGCMTAAEISKYLTLSSIKDHPWHIQSCCALTGEGLCQGLEWMTSRIGVR 179
>pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
pdb|4DCN|B Chain B, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
Length = 166
Score = 169 bits (428), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 79/160 (49%), Positives = 112/160 (70%)
Query: 18 IKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRAL 77
+++L++GLD +GKTTILY++++GE+VTT PTIGFNVE V YKN F VWD+GG IR
Sbjct: 5 MRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPY 64
Query: 78 WRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTA 137
WR Y+ +T + +VVDS DR+RI +++EL +L + EL A L+VFANKQD+ M ++
Sbjct: 65 WRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSS 124
Query: 138 EVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNI 177
E+A+ L L +L R+W I SA G GL E ++WL +
Sbjct: 125 EMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETL 164
>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1
pdb|3DOF|A Chain A, Complex Of Arl2 And Bart, Crystal Form 2
Length = 192
Score = 167 bits (422), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 78/177 (44%), Positives = 119/177 (67%)
Query: 4 LISRLAKRFFPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSF 63
L++ L K + ++LLM+GLD +GKTTIL K +I T +PT+GFN++ +E++
Sbjct: 3 LLTILKKMKQKERELRLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFNIKTLEHRGFKL 62
Query: 64 CVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLV 123
+WDVGGQ +R+ WR+YF T GL +VVDS+DR+R+ + + EL +L + L+ A LL+
Sbjct: 63 NIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLI 122
Query: 124 FANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNISVK 180
FANKQDLP + + + + LEL S+ W IQ CSA++G+ L G+DWL ++IS +
Sbjct: 123 FANKQDLPGALSSNAIREVLELDSIRSHHWCIQGCSAVTGENLLPGIDWLLDDISSR 179
>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native)
Length = 186
Score = 166 bits (421), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 77/177 (43%), Positives = 118/177 (66%)
Query: 4 LISRLAKRFFPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSF 63
L++ L K + ++LLM+GLD +GKTTIL K ++ T +PT+GFN++ +E++
Sbjct: 5 LLTILKKMKQKERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKL 64
Query: 64 CVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLV 123
+WDVGGQ +R+ WR+YF T GL +VVDS+DR+R+ + + EL +L + L+ A LL+
Sbjct: 65 NIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLI 124
Query: 124 FANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNISVK 180
FANKQDLP + + + LEL S+ W IQ CSA++G+ L G+DWL ++IS +
Sbjct: 125 FANKQDLPGALSXNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISSR 181
>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1
Length = 186
Score = 166 bits (420), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 77/177 (43%), Positives = 118/177 (66%)
Query: 4 LISRLAKRFFPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSF 63
L++ L K + ++LLM+GLD +GKTTIL K ++ T +PT+GFN++ +E++
Sbjct: 5 LLTILKKMKQKERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKL 64
Query: 64 CVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLV 123
+WDVGGQ +R+ WR+YF T GL +VVDS+DR+R+ + + EL +L + L+ A LL+
Sbjct: 65 NIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLI 124
Query: 124 FANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNISVK 180
FANKQDLP + + + LEL S+ W IQ CSA++G+ L G+DWL ++IS +
Sbjct: 125 FANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISSR 181
>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
(Casp Target)
Length = 181
Score = 166 bits (419), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 74/155 (47%), Positives = 110/155 (70%)
Query: 19 KLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALW 78
K+++VGLD +GKTTILY+ + E+V T+PTIG NVE + N F +WD+GGQ +R+ W
Sbjct: 23 KVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSW 82
Query: 79 RHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAE 138
Y+ +T + VVDS+DRERIS R EL+++L+ +L A LL+FANKQD+ M AE
Sbjct: 83 NTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAE 142
Query: 139 VADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWL 173
++ L+L S+ +W IQ+C A++G+GL +GL+W+
Sbjct: 143 ISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWM 177
>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|C Chain C, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|D Chain D, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
Length = 183
Score = 166 bits (419), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 74/155 (47%), Positives = 110/155 (70%)
Query: 19 KLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALW 78
K+++VGLD +GKTTILY+ + E+V T+PTIG NVE + N F +WD+GGQ +R+ W
Sbjct: 24 KVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSW 83
Query: 79 RHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAE 138
Y+ +T + VVDS+DRERIS R EL+++L+ +L A LL+FANKQD+ M AE
Sbjct: 84 NTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAE 143
Query: 139 VADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWL 173
++ L+L S+ +W IQ+C A++G+GL +GL+W+
Sbjct: 144 ISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWM 178
>pdb|2X77|A Chain A, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1.
pdb|2X77|B Chain B, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1
Length = 189
Score = 162 bits (410), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 85/176 (48%), Positives = 126/176 (71%), Gaps = 3/176 (1%)
Query: 1 MGKLISRLAKRF--FPQCR-IKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVE 57
MG ++ L + P R I++LM+GLD +GKT+ILY++ LG++VTT PT+G N+E ++
Sbjct: 3 MGAWLASLKQTLGLLPADRKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVNLETLQ 62
Query: 58 YKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELS 117
YKN SF VWD+GGQ +R WR YF DT + +VVDS+DR+R+ A++EL+ +L ++EL
Sbjct: 63 YKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELR 122
Query: 118 NAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWL 173
+ LL+FANKQDLP+ AE+A++L + S+ R W+I S+ +G GL EG+DWL
Sbjct: 123 KSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWL 178
>pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
pdb|4GOK|A Chain A, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
Length = 169
Score = 162 bits (409), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 73/163 (44%), Positives = 111/163 (68%)
Query: 18 IKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRAL 77
++LLM+GLD +GKTTIL K ++ T +PT+GFN++ +E++ +WDVGG +R+
Sbjct: 2 LRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGLKSLRSY 61
Query: 78 WRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTA 137
WR+YF T GL +VVDS+DR+R+ + + EL +L + L+ A LL+FANKQDLP +
Sbjct: 62 WRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCN 121
Query: 138 EVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNISVK 180
+ + LEL S+ W IQ CSA++G+ L G+DWL ++IS +
Sbjct: 122 AIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISSR 164
>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet)
Length = 186
Score = 153 bits (387), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 69/155 (44%), Positives = 103/155 (66%)
Query: 26 DASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDT 85
D +GKTTIL K ++ T +PT+GFN++ +E++ +WDVGGQ +R+ WR+YF T
Sbjct: 27 DNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFEST 86
Query: 86 LGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLEL 145
GL +VVDS+DR+R + + EL +L + L+ A LL+FANKQDLP + + + LEL
Sbjct: 87 DGLIWVVDSADRQRXQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSXNAIQEALEL 146
Query: 146 YSLGQRRWSIQSCSAISGQGLYEGLDWLSNNISVK 180
S+ W IQ CSA++G+ L G+DWL ++IS +
Sbjct: 147 DSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISSR 181
>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
pdb|4GOJ|B Chain B, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
Length = 189
Score = 151 bits (381), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 72/167 (43%), Positives = 115/167 (68%)
Query: 14 PQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNK 73
P +++L++GLD +GKTT+L ++ +I TPT GFN+++V+ + VWD+GGQ K
Sbjct: 14 PDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRK 73
Query: 74 IRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV 133
IR WR YF +T L +V+DS+DR+R E EL ++L + +LS +L+FANKQDL
Sbjct: 74 IRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTA 133
Query: 134 MPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNISVK 180
P +E+A+ L L+++ R W IQSCSA++G+G+ +G++W+ N++ K
Sbjct: 134 APASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVNAK 180
>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp
Length = 181
Score = 151 bits (381), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 72/167 (43%), Positives = 115/167 (68%)
Query: 14 PQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNK 73
P +++L++GLD +GKTT+L ++ +I TPT GFN+++V+ + VWD+GGQ K
Sbjct: 13 PDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRK 72
Query: 74 IRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV 133
IR WR YF +T L +V+DS+DR+R E EL ++L + +LS +L+FANKQDL
Sbjct: 73 IRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTA 132
Query: 134 MPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNISVK 180
P +E+A+ L L+++ R W IQSCSA++G+G+ +G++W+ N++ K
Sbjct: 133 APASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVNAK 179
>pdb|1UPT|A Chain A, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|C Chain C, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|E Chain E, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|G Chain G, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
Length = 171
Score = 150 bits (378), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 78/155 (50%), Positives = 105/155 (67%)
Query: 19 KLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALW 78
++L++GLD +GKTTILY++++GE+VTT PTIGFNVE V YKN F VWD+GG IR W
Sbjct: 9 RILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYW 68
Query: 79 RHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAE 138
R Y+ +T + +VVDS DR+RI +++EL L + EL A L+VFANKQD ++E
Sbjct: 69 RCYYSNTDAVIYVVDSCDRDRIGISKSELVAXLEEEELRKAILVVFANKQDXEQAXTSSE 128
Query: 139 VADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWL 173
A+ L L +L R+W I SA G GL E +WL
Sbjct: 129 XANSLGLPALKDRKWQIFKTSATKGTGLDEAXEWL 163
>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gdp-Alf4
Length = 164
Score = 147 bits (370), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 70/160 (43%), Positives = 112/160 (70%)
Query: 18 IKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRAL 77
+++L++GLD +GKTT+L ++ +I TPT GFN+++V+ + VWD+GGQ KIR
Sbjct: 5 VRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPY 64
Query: 78 WRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTA 137
WR YF +T L +V+DS+DR+R E EL ++L + +LS +L+FANKQDL P +
Sbjct: 65 WRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPAS 124
Query: 138 EVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNI 177
E+A+ L L+++ R W IQSCSA++G+G+ +G++W+ N+
Sbjct: 125 EIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 164
>pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gppnhp
Length = 164
Score = 144 bits (362), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 69/160 (43%), Positives = 111/160 (69%)
Query: 18 IKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRAL 77
+++L++GLD +GKTT+L ++ +I TPT GFN+++V+ + VWD+GG KIR
Sbjct: 5 VRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGLRKIRPY 64
Query: 78 WRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTA 137
WR YF +T L +V+DS+DR+R E EL ++L + +LS +L+FANKQDL P +
Sbjct: 65 WRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPAS 124
Query: 138 EVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNI 177
E+A+ L L+++ R W IQSCSA++G+G+ +G++W+ N+
Sbjct: 125 EIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 164
>pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|B Chain B, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|C Chain C, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
Length = 190
Score = 124 bits (310), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 64/164 (39%), Positives = 102/164 (62%), Gaps = 4/164 (2%)
Query: 18 IKLLMVGLDASGKTTILYKMKLGEIVTTT--PTIGFNVEAVEYKNKSFCVWDVGGQNKIR 75
+ +L +GLD SGKTTI+ K+K + PTIGF++E + + SF V+D+ GQ + R
Sbjct: 22 VHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKSSSLSFTVFDMSGQGRYR 81
Query: 76 ALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSN--AALLVFANKQDLPNV 133
LW HY+++ + FV+DSSDR R+ A+ EL +L+ ++ + +L FANK DL +
Sbjct: 82 NLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDA 141
Query: 134 MPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNI 177
+ + +V+ L L ++ + W I + AI G+GL EG+DWL + I
Sbjct: 142 VTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQI 185
>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c
Length = 186
Score = 110 bits (276), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 88/157 (56%), Gaps = 1/157 (0%)
Query: 18 IKLLMVGLDASGKTTILYKMKLGEIVT-TTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRA 76
++L +VGL SGKTT + + G+ PT+GFN+ V N + +WD+GGQ + R+
Sbjct: 23 MELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGNVTIKIWDIGGQPRFRS 82
Query: 77 LWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPT 136
+W Y R + +++D++DRE+I +RNELH +L +L +LV NK+DLPN +
Sbjct: 83 MWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNKRDLPNALDE 142
Query: 137 AEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWL 173
++ +K+ L ++ R S S + L WL
Sbjct: 143 KQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWL 179
>pdb|1M2O|B Chain B, Crystal Structure Of The Sec23-Sar1 Complex
pdb|1M2O|D Chain D, Crystal Structure Of The Sec23-Sar1 Complex
Length = 190
Score = 107 bits (268), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 60/166 (36%), Positives = 86/166 (51%), Gaps = 7/166 (4%)
Query: 19 KLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALW 78
KLL +GLD +GKTT+L+ +K + T PT E + N F +D+GG + R LW
Sbjct: 25 KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLW 84
Query: 79 RHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAE 138
+ YF + G+ F+VD++D ER EAR EL + + EL + ++ NK D PN + AE
Sbjct: 85 KDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAE 144
Query: 139 VADKLELYSL-------GQRRWSIQSCSAISGQGLYEGLDWLSNNI 177
+ L L + GQR + CS + G E WLS I
Sbjct: 145 LRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQYI 190
>pdb|2QTV|B Chain B, Structure Of Sec23-Sar1 Complexed With The Active Fragment
Of Sec31
Length = 167
Score = 107 bits (267), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 59/163 (36%), Positives = 85/163 (52%), Gaps = 7/163 (4%)
Query: 19 KLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALW 78
KLL +GLD +GKTT+L+ +K + T PT E + N F +D+GG + R LW
Sbjct: 3 KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLW 62
Query: 79 RHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAE 138
+ YF + G+ F+VD++D ER EAR EL + + EL + ++ NK D PN + AE
Sbjct: 63 KDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAE 122
Query: 139 VADKLELYSL-------GQRRWSIQSCSAISGQGLYEGLDWLS 174
+ L L + GQR + CS + G E WLS
Sbjct: 123 LRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLS 165
>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
(Arl10b)
Length = 193
Score = 107 bits (266), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 90/165 (54%), Gaps = 1/165 (0%)
Query: 10 KRFFPQCRIKLLMVGLDASGKTTILYKMKLGEI-VTTTPTIGFNVEAVEYKNKSFCVWDV 68
K F + ++L +VGL SGKTT + + G+ PT+GFN+ + N + +WD+
Sbjct: 24 KALFWKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDI 83
Query: 69 GGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQ 128
GGQ + R++W Y R + ++VD++D+E+I ++NELH +L +L +LV NK+
Sbjct: 84 GGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKR 143
Query: 129 DLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWL 173
DLP + E+ +K+ L ++ R S S + L WL
Sbjct: 144 DLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWL 188
>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
Length = 188
Score = 105 bits (263), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 87/157 (55%), Gaps = 1/157 (0%)
Query: 18 IKLLMVGLDASGKTTILYKMKLGEI-VTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRA 76
++L +VGL SGKTT + + G+ PT+GFN+ + N + +WD+GGQ + R+
Sbjct: 23 MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRS 82
Query: 77 LWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPT 136
+W Y R + ++VD++D+E+I ++NELH +L +L +LV NK+DLP +
Sbjct: 83 MWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDE 142
Query: 137 AEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWL 173
E+ +K+ L ++ R S S + L WL
Sbjct: 143 KELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWL 179
>pdb|4BAS|A Chain A, Structure Of The Arl6 Bbs3 Small Gtpase From Trypanosoma
Brucei With Bound Nucleotide Analogue Gppnp
Length = 199
Score = 105 bits (262), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 58/174 (33%), Positives = 94/174 (54%), Gaps = 10/174 (5%)
Query: 15 QCRIKLLMVGLDASGKTTILYKMKLGEIVTT--TPTIGFNVEAVEYKNKSFCVWDVGGQN 72
+ +++++M GLD SGKTTI+ ++K + + T T+G+NVE E +F V+D+GG
Sbjct: 15 KTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVETFEKGRVAFTVFDMGGAK 74
Query: 73 KIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNEL-------SNAALLVFA 125
K R LW Y+ + + FVVDSSD R+ ++E+ +L ++ L FA
Sbjct: 75 KFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFA 134
Query: 126 NKQDLPNVMPTAEVADKLELYSL-GQRRWSIQSCSAISGQGLYEGLDWLSNNIS 178
NK D AE+ + L+L +L G + I + + + G G++EG WL S
Sbjct: 135 NKMDAAGAKTAAELVEILDLTTLMGDHPFVIFASNGLKGTGVHEGFSWLQETAS 188
>pdb|2FMX|A Chain A, An Open Conformation Of Switch I Revealed By Sar1-gdp
Crystal Structure At Low Mg(2+)
pdb|2FMX|B Chain B, An Open Conformation Of Switch I Revealed By Sar1-gdp
Crystal Structure At Low Mg(2+)
Length = 195
Score = 97.1 bits (240), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 86/171 (50%), Gaps = 12/171 (7%)
Query: 19 KLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALW 78
KL+ +GLD +GKTT+L+ +K + PT+ E + +F +D+GG + R +W
Sbjct: 24 KLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVW 83
Query: 79 RHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAE 138
++Y G+ F+VD +D ER+ E++ EL +++D ++N +L+ NK D P +
Sbjct: 84 KNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEER 143
Query: 139 VADKLELYS------------LGQRRWSIQSCSAISGQGLYEGLDWLSNNI 177
+ + LY L R + CS + QG EG W++ I
Sbjct: 144 LREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 194
>pdb|1F6B|A Chain A, Crystal Structure Of Sar1-Gdp Complex
pdb|1F6B|B Chain B, Crystal Structure Of Sar1-Gdp Complex
Length = 198
Score = 97.1 bits (240), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 86/171 (50%), Gaps = 12/171 (7%)
Query: 19 KLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALW 78
KL+ +GLD +GKTT+L+ +K + PT+ E + +F +D+GG + R +W
Sbjct: 27 KLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVW 86
Query: 79 RHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAE 138
++Y G+ F+VD +D ER+ E++ EL +++D ++N +L+ NK D P +
Sbjct: 87 KNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEER 146
Query: 139 VADKLELYS------------LGQRRWSIQSCSAISGQGLYEGLDWLSNNI 177
+ + LY L R + CS + QG EG W++ I
Sbjct: 147 LREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 197
>pdb|2FA9|A Chain A, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight
Into The Coat-controlled Gtp Hydrolysis In The
Disassembly Of Cop Ii
pdb|2FA9|B Chain B, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight
Into The Coat-controlled Gtp Hydrolysis In The
Disassembly Of Cop Ii
Length = 189
Score = 95.9 bits (237), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 86/171 (50%), Gaps = 12/171 (7%)
Query: 19 KLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALW 78
KL+ +GLD +GKTT+L+ +K + PT+ E + +F +D+GG + R +W
Sbjct: 18 KLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGGIQARRVW 77
Query: 79 RHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAE 138
++Y G+ F+VD +D ER+ E++ EL +++D ++N +L+ NK D P +
Sbjct: 78 KNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEER 137
Query: 139 VADKLELYS------------LGQRRWSIQSCSAISGQGLYEGLDWLSNNI 177
+ + LY L R + CS + QG EG W++ I
Sbjct: 138 LREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 188
>pdb|2GAO|A Chain A, Crystal Structure Of Human Sar1a In Complex With Gdp
pdb|2GAO|B Chain B, Crystal Structure Of Human Sar1a In Complex With Gdp
Length = 208
Score = 95.5 bits (236), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 87/171 (50%), Gaps = 12/171 (7%)
Query: 19 KLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALW 78
KL+ +GLD +GKTT+L+ +K + PT+ E + +F +D+GG + R +W
Sbjct: 37 KLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHEQARRVW 96
Query: 79 RHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAE 138
++Y G+ F+VD +D R+ E++ EL+ +++D +SN +L+ NK D + + +
Sbjct: 97 KNYLPAINGIVFLVDCADHSRLVESKVELNALMTDETISNVPILILGNKIDRTDAISEEK 156
Query: 139 VADKLELYS------------LGQRRWSIQSCSAISGQGLYEGLDWLSNNI 177
+ + LY L R + CS + QG EG WLS I
Sbjct: 157 LREIFGLYGQTTGKGNVTLKELNARPMEVFMCSVLKRQGYGEGFRWLSQYI 207
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 63.9 bits (154), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 66/145 (45%), Gaps = 20/145 (13%)
Query: 18 IKLLMVGLDASGKTTILYKM---KLGEIVTTTPTIGFNVEAVEYK--------NKSFCV- 65
IKLL +G GKTT LY+ K TT I F + V Y K+F V
Sbjct: 26 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVH 85
Query: 66 ---WDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALL 122
WD GQ + R+L +FRD +G + D + ++ RN + Q+ ++ N ++
Sbjct: 86 LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV 145
Query: 123 VFANKQDLP-----NVMPTAEVADK 142
+ NK DLP N E+ADK
Sbjct: 146 LIGNKADLPDQREVNERQARELADK 170
>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IF0|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 200
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 60/130 (46%), Gaps = 15/130 (11%)
Query: 18 IKLLMVGLDASGKTTILYKM---KLGEIVTTTPTIGFNVEAVEYKN--------KSFCV- 65
IKLL +G GKTT LY+ K TT I F + V Y K+F V
Sbjct: 12 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVH 71
Query: 66 ---WDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALL 122
WD G + R+L +FRD +G + D + ++ RN + Q+ ++ N ++
Sbjct: 72 LQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV 131
Query: 123 VFANKQDLPN 132
+ NK DLP+
Sbjct: 132 LIGNKADLPD 141
>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|H Chain H, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|I Chain I, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 220
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 60/130 (46%), Gaps = 15/130 (11%)
Query: 18 IKLLMVGLDASGKTTILYKM---KLGEIVTTTPTIGFNVEAVEY--------KNKSFCV- 65
IKLL +G GKTT LY+ K TT I F + V Y K+F V
Sbjct: 12 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVH 71
Query: 66 ---WDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALL 122
WD G + R+L +FRD +G + D + ++ RN + Q+ ++ N ++
Sbjct: 72 LQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV 131
Query: 123 VFANKQDLPN 132
+ NK DLP+
Sbjct: 132 LIGNKADLPD 141
>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
pdb|2IEY|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
Length = 195
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 57/130 (43%), Gaps = 15/130 (11%)
Query: 18 IKLLMVGLDASGKTTILYKM---KLGEIVTTTPTIGFNVEAVEYKN--------KSFCV- 65
IKLL +G GKTT LY+ K TT I F + V Y K+F V
Sbjct: 12 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVH 71
Query: 66 ---WDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALL 122
WD G + R+L +FRD G D + ++ RN Q+ ++ N ++
Sbjct: 72 LQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPDIV 131
Query: 123 VFANKQDLPN 132
+ NK DLP+
Sbjct: 132 LIGNKADLPD 141
>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
pdb|2ZET|B Chain B, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
Length = 203
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 57/130 (43%), Gaps = 15/130 (11%)
Query: 18 IKLLMVGLDASGKTTILYKM---KLGEIVTTTPTIGFNVEAVEYKN--------KSFCV- 65
IKLL +G GKTT LY+ K TT I F + V Y K+F V
Sbjct: 12 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVH 71
Query: 66 ---WDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALL 122
WD G + R+L +FRD G D + ++ RN Q+ ++ N ++
Sbjct: 72 LQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPDIV 131
Query: 123 VFANKQDLPN 132
+ NK DLP+
Sbjct: 132 LIGNKADLPD 141
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 53.5 bits (127), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 62/133 (46%), Gaps = 10/133 (7%)
Query: 18 IKLLMVGLDASGKTTILYKM---KLGEIVTTTPTIGFNVEAVEYKNKS--FCVWDVGGQN 72
+K+L++G GK+ +L + K TT I F ++ V+ K +WD GQ
Sbjct: 4 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 63
Query: 73 KIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSN--AALLVFANKQDL 130
+ R + Y+R +G+ V D +D + + + NE +N A LL+ NK D+
Sbjct: 64 RFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTV---NEHANDEAQLLLVGNKSDM 120
Query: 131 PNVMPTAEVADKL 143
+ TA+ + L
Sbjct: 121 ETRVVTADQGEAL 133
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 53.5 bits (127), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 62/133 (46%), Gaps = 10/133 (7%)
Query: 18 IKLLMVGLDASGKTTILYKM---KLGEIVTTTPTIGFNVEAVEYKNKS--FCVWDVGGQN 72
+K+L++G GK+ +L + K TT I F ++ V+ K +WD GQ
Sbjct: 21 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQE 80
Query: 73 KIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSN--AALLVFANKQDL 130
+ R + Y+R +G+ V D +D + + + NE +N A LL+ NK D+
Sbjct: 81 RFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTV---NEHANDEAQLLLVGNKSDM 137
Query: 131 PNVMPTAEVADKL 143
+ TA+ + L
Sbjct: 138 ETRVVTADQGEAL 150
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 53.1 bits (126), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 62/133 (46%), Gaps = 10/133 (7%)
Query: 18 IKLLMVGLDASGKTTILYKM---KLGEIVTTTPTIGFNVEAVEYKNKS--FCVWDVGGQN 72
+K+L++G GK+ +L + K TT I F ++ V+ K +WD GQ
Sbjct: 8 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQE 67
Query: 73 KIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSN--AALLVFANKQDL 130
+ R + Y+R +G+ V D +D + + + NE +N A LL+ NK D+
Sbjct: 68 RFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTV---NEHANDEAQLLLVGNKSDM 124
Query: 131 PNVMPTAEVADKL 143
+ TA+ + L
Sbjct: 125 ETRVVTADQGEAL 137
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 59/121 (48%), Gaps = 7/121 (5%)
Query: 19 KLLMVGLDASGKTTILYKMKLGEI-VTTTPTIG--FNVEAVEYKNKSFC---VWDVGGQN 72
K++++G GK+ +L + E + + TIG F ++++ KN +WD GQ
Sbjct: 9 KIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIWDTAGQE 68
Query: 73 KIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPN 132
+ RA+ Y+R +G V D + + L + L DN SN +L+ NK DL +
Sbjct: 69 RYRAITSAYYRGAVGALLVYDITKKNSFENIEKWLKE-LRDNADSNIVILLVGNKSDLKH 127
Query: 133 V 133
+
Sbjct: 128 L 128
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 61/133 (45%), Gaps = 7/133 (5%)
Query: 19 KLLMVGLDASGKTTILYKMK---LGEIVTTTPTIGFNVEAVEYKNK--SFCVWDVGGQNK 73
KLL++G GKT +L++ +T I F + +E K +WD GQ +
Sbjct: 8 KLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQER 67
Query: 74 IRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV 133
R + Y+R +G+ V D ++ + RN + I ++ ++ ++ NK D+ +
Sbjct: 68 FRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNI-EEHASADVEKMILGNKCDVNDK 126
Query: 134 MPTA-EVADKLEL 145
+ E +KL L
Sbjct: 127 RQVSKERGEKLAL 139
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 61/134 (45%), Gaps = 7/134 (5%)
Query: 18 IKLLMVGLDASGKTTILYKMK---LGEIVTTTPTIGFNVEAVEYKNK--SFCVWDVGGQN 72
KLL++G GKT +L++ +T I F + +E K +WD GQ
Sbjct: 9 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 68
Query: 73 KIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPN 132
+ R + Y+R +G+ V D ++ + RN + I ++ ++ ++ NK D+ +
Sbjct: 69 RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNI-EEHASADVEKMILGNKCDVND 127
Query: 133 VMPTA-EVADKLEL 145
+ E +KL L
Sbjct: 128 KRQVSKERGEKLAL 141
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 66/136 (48%), Gaps = 11/136 (8%)
Query: 18 IKLLMVGLDASGKTTILYKM---KLGEIVTTTPTIGFNVEAVEYKNK--SFCVWDVGGQN 72
KLL++G + GKT+ L++ +T I F V+ V +K +WD GQ
Sbjct: 23 FKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQE 82
Query: 73 KIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPN 132
+ R + Y+R +G + D +++E + ++ QI + NA +++ NK DL +
Sbjct: 83 RYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKT-YSWDNAQVILVGNKCDLED 141
Query: 133 --VMPTAE---VADKL 143
V+P + +AD L
Sbjct: 142 ERVVPAEDGRRLADDL 157
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 61/126 (48%), Gaps = 6/126 (4%)
Query: 18 IKLLMVGLDASGKTTILYKMKLGEI-VTTTPTIG--FNVEAVEYKNK--SFCVWDVGGQN 72
+K+ ++G GK++I+++ PTIG F + V+Y+N+ F +WD GQ
Sbjct: 6 LKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQE 65
Query: 73 KIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPN 132
+ RAL Y+R + V D + E S +N + + L + + + + NK DL +
Sbjct: 66 RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRE-LRQHGPPSIVVAIAGNKCDLTD 124
Query: 133 VMPTAE 138
V E
Sbjct: 125 VREVME 130
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 59/132 (44%), Gaps = 10/132 (7%)
Query: 19 KLLMVGLDASGKTTILYKM---KLGEIVTTTPTIGFNVEAVEYKNKS--FCVWDVGGQNK 73
K+L++G GK+ +L + K TT I F ++ V+ K +WD GQ +
Sbjct: 5 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 64
Query: 74 IRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSN--AALLVFANKQDLP 131
R + Y+R G+ V D +D + + + NE +N A LL+ NK D
Sbjct: 65 FRTITTAYYRGAXGIILVYDITDERTFTNIKQWFKTV---NEHANDEAQLLLVGNKSDXE 121
Query: 132 NVMPTAEVADKL 143
+ TA+ + L
Sbjct: 122 TRVVTADQGEAL 133
>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a
pdb|3BC1|E Chain E, Crystal Structure Of The Complex Rab27a-slp2a
Length = 195
Score = 50.4 bits (119), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 57/136 (41%), Gaps = 15/136 (11%)
Query: 18 IKLLMVGLDASGKTTILYKMKLGEI---VTTTPTIGFNVEAVEYKNKS------------ 62
IK L +G GKT++LY+ G+ TT I F + V Y+
Sbjct: 12 IKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIH 71
Query: 63 FCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALL 122
+WD G + R+L +FRD +G + D ++ + RN + Q+ N ++
Sbjct: 72 LQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIV 131
Query: 123 VFANKQDLPNVMPTAE 138
+ NK DL + E
Sbjct: 132 LCGNKSDLEDQRAVKE 147
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 50.1 bits (118), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 59/132 (44%), Gaps = 10/132 (7%)
Query: 19 KLLMVGLDASGKTTILYKM---KLGEIVTTTPTIGFNVEAVEYKNKS--FCVWDVGGQNK 73
K+L++G GK+ +L + K TT I F ++ V+ K +WD GQ +
Sbjct: 5 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER 64
Query: 74 IRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSN--AALLVFANKQDLP 131
R + Y+R G+ V D +D + + + NE +N A LL+ NK D
Sbjct: 65 FRTITTAYYRGAXGIILVYDVTDERTFTNIKQWFKTV---NEHANDEAQLLLVGNKSDXE 121
Query: 132 NVMPTAEVADKL 143
+ TA+ + L
Sbjct: 122 TRVVTADQGEAL 133
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 59/126 (46%), Gaps = 8/126 (6%)
Query: 18 IKLLMVGLDASGKTTILYKMK---LGEIVTTTPTIGFNVEAVEYKNK--SFCVWDVGGQN 72
KLL++G + GKT+ L++ +T I F V+ V K +WD GQ
Sbjct: 24 FKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQE 83
Query: 73 KIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPN 132
+ R + Y+R +G + D ++ E + ++ QI + NA +++ NK D+
Sbjct: 84 RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKT-YSWDNAQVILVGNKCDMEE 142
Query: 133 --VMPT 136
V+PT
Sbjct: 143 ERVVPT 148
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 55/118 (46%), Gaps = 8/118 (6%)
Query: 19 KLLMVGLDASGKTTILYKM---KLGEIVTTTPTIGFNVEAVEYKNKS--FCVWDVGGQNK 73
KLL++G GK+ +L + E +T + F + +E K+ +WD GQ +
Sbjct: 11 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 70
Query: 74 IRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELS-NAALLVFANKQDL 130
R + Y+R G+ V D +D+E + + L +I D S N L+ NK DL
Sbjct: 71 FRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEI--DRYASENVNKLLVGNKSDL 126
>pdb|3CX7|A Chain A, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex
With Galpha-13 Bound To Gdp-Alf4
pdb|3CX8|A Chain A, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex
With Galpha-13 Bound To Gtp-Gamma-S
Length = 338
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 49/99 (49%), Gaps = 10/99 (10%)
Query: 42 IVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSS------ 95
++ PT G + E KN F + DVGGQ R W F + F+V SS
Sbjct: 158 LLARRPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVL 217
Query: 96 --DRE--RISEARNELHQILSDNELSNAALLVFANKQDL 130
DR+ R++E+ N I+++ SN ++++F NK DL
Sbjct: 218 MEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDL 256
>pdb|1ZCB|A Chain A, Crystal Structure Of G Alpha 13 In Complex With Gdp
pdb|3AB3|A Chain A, Crystal Structure Of P115rhogef Rgs Domain In Complex With
G Alpha 13
pdb|3AB3|C Chain C, Crystal Structure Of P115rhogef Rgs Domain In Complex With
G Alpha 13
Length = 362
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 49/99 (49%), Gaps = 10/99 (10%)
Query: 42 IVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSS------ 95
++ PT G + E KN F + DVGGQ R W F + F+V SS
Sbjct: 182 LLARRPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVL 241
Query: 96 --DRE--RISEARNELHQILSDNELSNAALLVFANKQDL 130
DR+ R++E+ N I+++ SN ++++F NK DL
Sbjct: 242 MEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDL 280
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 55/119 (46%), Gaps = 8/119 (6%)
Query: 18 IKLLMVGLDASGKTTILYKM---KLGEIVTTTPTIGFNVEAVEYKNKS--FCVWDVGGQN 72
KLL++G GK+ +L + E +T + F + +E K+ +WD GQ
Sbjct: 10 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 69
Query: 73 KIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELS-NAALLVFANKQDL 130
+ R + Y+R G+ V D +D+E + + L +I D S N L+ NK DL
Sbjct: 70 RFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEI--DRYASENVNKLLVGNKSDL 126
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 60/137 (43%), Gaps = 13/137 (9%)
Query: 18 IKLLMVGLDASGKTTILYKMK---LGEIVTTTPTIGFNVEAVEYKNKS--FCVWDVGGQN 72
KLL++G GK+ +L + E +T + F + +E K+ +WD GQ
Sbjct: 26 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 85
Query: 73 KIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELS-NAALLVFANKQDLP 131
+ R + Y+R G+ V D +D+E + + L +I D S N L+ NK DL
Sbjct: 86 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI--DRYASENVNKLLVGNKCDLT 143
Query: 132 -----NVMPTAEVADKL 143
+ E AD L
Sbjct: 144 TKKVVDYTTAKEFADSL 160
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 60/137 (43%), Gaps = 13/137 (9%)
Query: 18 IKLLMVGLDASGKTTILYKM---KLGEIVTTTPTIGFNVEAVEYKNKS--FCVWDVGGQN 72
KLL++G GK+ +L + E +T + F + +E K+ +WD GQ
Sbjct: 34 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 93
Query: 73 KIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELS-NAALLVFANKQDLP 131
+ R + Y+R G+ V D +D+E + + L +I D S N L+ NK DL
Sbjct: 94 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI--DRYASENVNKLLVGNKCDLT 151
Query: 132 -----NVMPTAEVADKL 143
+ E AD L
Sbjct: 152 TKKVVDYTTAKEFADSL 168
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 60/136 (44%), Gaps = 13/136 (9%)
Query: 19 KLLMVGLDASGKTTILYKM---KLGEIVTTTPTIGFNVEAVEYKNKS--FCVWDVGGQNK 73
KLL++G GK+ +L + E +T + F + +E K+ +WD GQ +
Sbjct: 1 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 60
Query: 74 IRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELS-NAALLVFANKQDLP- 131
R + Y+R G+ V D +D+E + + L +I D S N L+ NK DL
Sbjct: 61 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI--DRYASENVNKLLVGNKCDLTT 118
Query: 132 ----NVMPTAEVADKL 143
+ E AD L
Sbjct: 119 KKVVDYTTAKEFADSL 134
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 54/117 (46%), Gaps = 6/117 (5%)
Query: 19 KLLMVGLDASGKTTILYKM---KLGEIVTTTPTIGFNVEAVEYKNKS--FCVWDVGGQNK 73
KLL++G GK+ +L + + +T + F + + +NK+ +WD GQ +
Sbjct: 11 KLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWDTAGQER 70
Query: 74 IRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDL 130
R + Y+R G+ V D +DR+ + + +I + N L+ NK DL
Sbjct: 71 FRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEI-DRYAMENVNKLLVGNKCDL 126
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 55/119 (46%), Gaps = 8/119 (6%)
Query: 18 IKLLMVGLDASGKTTILYKMK---LGEIVTTTPTIGFNVEAVEYKNKS--FCVWDVGGQN 72
KLL++G GK+ +L + E +T + F + +E K+ +WD GQ
Sbjct: 17 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 76
Query: 73 KIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELS-NAALLVFANKQDL 130
+ R + Y+R G+ V D +D+E + + L +I D S N L+ NK DL
Sbjct: 77 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI--DRYASENVNKLLVGNKCDL 133
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 60/137 (43%), Gaps = 13/137 (9%)
Query: 18 IKLLMVGLDASGKTTILYKM---KLGEIVTTTPTIGFNVEAVEYKNKS--FCVWDVGGQN 72
KLL++G GK+ +L + E +T + F + +E K+ +WD GQ
Sbjct: 7 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 66
Query: 73 KIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELS-NAALLVFANKQDLP 131
+ R + Y+R G+ V D +D+E + + L +I D S N L+ NK DL
Sbjct: 67 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI--DRYASENVNKLLVGNKCDLT 124
Query: 132 -----NVMPTAEVADKL 143
+ E AD L
Sbjct: 125 TKKVVDYTTAKEFADSL 141
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 60/136 (44%), Gaps = 13/136 (9%)
Query: 19 KLLMVGLDASGKTTILYKM---KLGEIVTTTPTIGFNVEAVEYKNKS--FCVWDVGGQNK 73
KLL++G GK+ +L + E +T + F + +E K+ +WD GQ +
Sbjct: 8 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 67
Query: 74 IRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELS-NAALLVFANKQDLP- 131
R + Y+R G+ V D +D+E + + L +I D S N L+ NK DL
Sbjct: 68 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI--DRYASENVNKLLVGNKCDLTT 125
Query: 132 ----NVMPTAEVADKL 143
+ E AD L
Sbjct: 126 KKVVDYTTAKEFADSL 141
>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
The Minimal Rab Binding Domain Of Rabenosyn-5
Length = 170
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 60/126 (47%), Gaps = 6/126 (4%)
Query: 18 IKLLMVGLDASGKTTILYKMKLGEI-VTTTPTIG--FNVEAVEYKNK--SFCVWDVGGQN 72
+K+ ++G GK++I+++ PTIG F + V+Y+N+ F +WD G
Sbjct: 7 LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 66
Query: 73 KIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPN 132
+ RAL Y+R + V D + E S +N + + L + + + + NK DL +
Sbjct: 67 RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRE-LRQHGPPSIVVAIAGNKCDLTD 125
Query: 133 VMPTAE 138
V E
Sbjct: 126 VREVME 131
>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp
pdb|3RWO|B Chain B, Crystal Structure Of Ypt32 In Complex With Gdp
pdb|3RWO|A Chain A, Crystal Structure Of Ypt32 In Complex With Gdp
Length = 185
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 60/128 (46%), Gaps = 8/128 (6%)
Query: 18 IKLLMVGLDASGKTTILYKMKLGEI-VTTTPTIG--FNVEAVEYKNKSF--CVWDVGGQN 72
K++++G GK+ +L + E + + TIG F +E +NK +WD G
Sbjct: 11 FKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDTAGLE 70
Query: 73 KIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPN 132
+ RA+ Y+R +G V D S + L + L +N N A+ + NK DL +
Sbjct: 71 RYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTE-LRENADDNVAVGLIGNKSDLAH 129
Query: 133 V--MPTAE 138
+ +PT E
Sbjct: 130 LRAVPTDE 137
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 54/119 (45%), Gaps = 9/119 (7%)
Query: 19 KLLMVGLDASGKTTILYKMK----LGEIVTTTPTIGFNVEAVEYKNKS--FCVWDVGGQN 72
KLL++G GK+++L + G +TT + F + VE + +WD GQ
Sbjct: 11 KLLIIGDSGVGKSSLLLRFADNTFSGSYITTIG-VDFKIRTVEINGEKVKLQIWDTAGQE 69
Query: 73 KIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLP 131
+ R + Y+R T G+ V D + E + LH+I + + ++ NK D P
Sbjct: 70 RFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEI--NQNCDDVCRILVGNKNDDP 126
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 59/137 (43%), Gaps = 13/137 (9%)
Query: 18 IKLLMVGLDASGKTTILYKM---KLGEIVTTTPTIGFNVEAVEYKNKS--FCVWDVGGQN 72
KLL++G GK +L + E +T + F + +E K+ +WD GQ
Sbjct: 17 FKLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 76
Query: 73 KIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELS-NAALLVFANKQDLP 131
+ R + Y+R G+ V D +D+E + + L +I D S N L+ NK DL
Sbjct: 77 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI--DRYASENVNKLLVGNKCDLT 134
Query: 132 -----NVMPTAEVADKL 143
+ E AD L
Sbjct: 135 TKKVVDYTTAKEFADSL 151
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 58/121 (47%), Gaps = 8/121 (6%)
Query: 18 IKLLMVGLDASGKTTILYKM---KLGEIVTTTPTIGFNVEAVEYKNKS---FCVWDVGGQ 71
K+L++G + GKT+ L++ +T I F V+ + Y+N +WD GQ
Sbjct: 6 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTI-YRNDKRIKLQIWDTAGQ 64
Query: 72 NKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLP 131
+ R + Y+R +G + D ++ E + ++ QI + NA +L+ NK D+
Sbjct: 65 ERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKT-YSWDNAQVLLVGNKCDME 123
Query: 132 N 132
+
Sbjct: 124 D 124
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 8/121 (6%)
Query: 18 IKLLMVGLDASGKTTILYKMKLGEIVT---TTPTIGFNVEAVEYKNKS--FCVWDVGGQN 72
KLL++G GK+ +L + +T + F ++ VE K+ +WD GQ
Sbjct: 22 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 81
Query: 73 KIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAAL-LVFANKQDLP 131
+ R + Y+R + G+ V D +D+E + + L +I D ++ L L+ NK DL
Sbjct: 82 RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEI--DRYATSTVLKLLVGNKCDLK 139
Query: 132 N 132
+
Sbjct: 140 D 140
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 8/121 (6%)
Query: 18 IKLLMVGLDASGKTTILYKMKLGEIVT---TTPTIGFNVEAVEYKNKS--FCVWDVGGQN 72
KLL++G GK+ +L + +T + F ++ VE K+ +WD GQ
Sbjct: 9 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 68
Query: 73 KIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAAL-LVFANKQDLP 131
+ R + Y+R + G+ V D +D+E + + L +I D ++ L L+ NK DL
Sbjct: 69 RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEI--DRYATSTVLKLLVGNKCDLK 126
Query: 132 N 132
+
Sbjct: 127 D 127
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With
Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 8/121 (6%)
Query: 18 IKLLMVGLDASGKTTILYKMKLGEIVT---TTPTIGFNVEAVEYKNKS--FCVWDVGGQN 72
KLL++G GK+ +L + +T + F ++ VE K+ +WD GQ
Sbjct: 9 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 68
Query: 73 KIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAAL-LVFANKQDLP 131
+ R + Y+R + G+ V D +D+E + + L +I D ++ L L+ NK DL
Sbjct: 69 RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEI--DRYATSTVLKLLVGNKCDLK 126
Query: 132 N 132
+
Sbjct: 127 D 127
>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 57/122 (46%), Gaps = 6/122 (4%)
Query: 16 CRIKLLMVGLDASGKTTILYKMKLG---EIVTTTPTIGFNVEAVEYKNKS--FCVWDVGG 70
C+ KL+++G A GK++++ + G E +T F + V + + F +WD G
Sbjct: 6 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAG 65
Query: 71 QNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDL 130
Q + +L Y+R V D ++ E + A+N + + L N + + NK DL
Sbjct: 66 QERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKE-LQRQASPNIVIALSGNKADL 124
Query: 131 PN 132
N
Sbjct: 125 AN 126
>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 57/122 (46%), Gaps = 6/122 (4%)
Query: 16 CRIKLLMVGLDASGKTTILYKMKLG---EIVTTTPTIGFNVEAVEYKNKS--FCVWDVGG 70
C+ KL+++G A GK++++ + G E +T F + V + + F +WD G
Sbjct: 5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAG 64
Query: 71 QNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDL 130
Q + +L Y+R V D ++ E + A+N + + L N + + NK DL
Sbjct: 65 QERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKE-LQRQASPNIVIALSGNKADL 123
Query: 131 PN 132
N
Sbjct: 124 AN 125
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 57/122 (46%), Gaps = 6/122 (4%)
Query: 16 CRIKLLMVGLDASGKTTILYKMKLG---EIVTTTPTIGFNVEAVEYKNKS--FCVWDVGG 70
C+ KL+++G A GK++++ + G E +T F + V + + F +WD G
Sbjct: 6 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAG 65
Query: 71 QNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDL 130
Q + +L Y+R V D ++ E + A+N + + L N + + NK DL
Sbjct: 66 QERYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKE-LQRQASPNIVIALSGNKADL 124
Query: 131 PN 132
N
Sbjct: 125 AN 126
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 60/128 (46%), Gaps = 8/128 (6%)
Query: 18 IKLLMVGLDASGKTTILYKMKLGEI-VTTTPTIG--FNVEAVEYKNKSF--CVWDVGGQN 72
K++++G GK+ +L + E + + TIG F +E + K +WD GQ
Sbjct: 14 FKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQE 73
Query: 73 KIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPN 132
+ RA+ Y+R +G V D S + L + L +N N A+ + NK DL +
Sbjct: 74 RYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSE-LRENADDNVAVGLIGNKSDLAH 132
Query: 133 V--MPTAE 138
+ +PT E
Sbjct: 133 LRAVPTEE 140
>pdb|4FMC|F Chain F, Espg-Rab1 Complex
Length = 117
Score = 46.6 bits (109), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 8/118 (6%)
Query: 20 LLMVGLDASGKTTILYKM---KLGEIVTTTPTIGFNVEAVEYKNKS--FCVWDVGGQNKI 74
LL++G GK+ +L + E +T + F + +E K+ +WD GQ +
Sbjct: 1 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 60
Query: 75 RALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELS-NAALLVFANKQDLP 131
R + Y+R G+ V D +D+E + + L +I D S N L+ NK DL
Sbjct: 61 RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI--DRYASENVNKLLVGNKCDLT 116
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 46.6 bits (109), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 5/97 (5%)
Query: 19 KLLMVGLDASGKTTILYKM---KLGEIVTTTPTIGFNVEAVEYKNKS--FCVWDVGGQNK 73
KLL++G GK+ +L + E +T + F + +E K+ +WD GQ +
Sbjct: 10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 69
Query: 74 IRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQI 110
R + Y+R G+ V D +D+E + + L +I
Sbjct: 70 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI 106
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 46.6 bits (109), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 59/131 (45%), Gaps = 23/131 (17%)
Query: 13 FPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTT--PTIGFNVEAVEYKNKSFCV----- 65
F K+++VG GKT +L + K G + T T+G ++++NK V
Sbjct: 6 FYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVG-----IDFRNKVLDVDGVKV 60
Query: 66 ----WDVGGQNKIRALWRHYFRDTLGLTFVVDSSDR---ERISEARNELHQILSDNELSN 118
WD GQ + R++ Y+RD L + D +++ + I E+H+ +
Sbjct: 61 KLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQ----HD 116
Query: 119 AALLVFANKQD 129
AL++ NK D
Sbjct: 117 VALMLLGNKVD 127
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 46.6 bits (109), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 61/127 (48%), Gaps = 8/127 (6%)
Query: 19 KLLMVGLDASGKTTILYKMKLGEI-VTTTPTIG--FNVEAVEYKNKSF--CVWDVGGQNK 73
K++++G GK+ +L + E + + TIG F +++ K+ +WD GQ +
Sbjct: 22 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQER 81
Query: 74 IRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV 133
RA+ Y+R +G V D + L + L D+ SN +++ NK DL ++
Sbjct: 82 YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKE-LRDHADSNIVIMLVGNKSDLRHL 140
Query: 134 --MPTAE 138
+PT E
Sbjct: 141 RAVPTDE 147
>pdb|1SVK|A Chain A, Structure Of The K180p Mutant Of Gi Alpha Subunit Bound To
Alf4 And Gdp
pdb|1SVS|A Chain A, Structure Of The K180p Mutant Of Gi Alpha Subunit Bound To
Gppnhp
Length = 353
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 10/97 (10%)
Query: 44 TTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERI--- 100
T PT G +K+ F ++DVGGQ R W H F + F V SD + +
Sbjct: 176 TRVPTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 235
Query: 101 SEARNELHQ-------ILSDNELSNAALLVFANKQDL 130
E N +H+ I ++ ++ ++++F NK+DL
Sbjct: 236 DEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 272
Score = 27.3 bits (59), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 18/22 (81%)
Query: 18 IKLLMVGLDASGKTTILYKMKL 39
+KLL++G SGK+TI+ +MK+
Sbjct: 33 VKLLLLGAGESGKSTIVKQMKI 54
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 61/128 (47%), Gaps = 8/128 (6%)
Query: 18 IKLLMVGLDASGKTTILYKMKLGEI-VTTTPTIG--FNVEAVEYKNKSF--CVWDVGGQN 72
K++++G GK+ +L + E + + TIG F +++ K+ +WD GQ
Sbjct: 30 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 89
Query: 73 KIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPN 132
+ RA+ Y+R +G V D + L + L D+ SN +++ NK DL +
Sbjct: 90 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKE-LRDHADSNIVIMLVGNKSDLRH 148
Query: 133 V--MPTAE 138
+ +PT E
Sbjct: 149 LRAVPTDE 156
>pdb|3CX6|A Chain A, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex
With Galpha-13 Bound To Gdp
Length = 338
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 48/99 (48%), Gaps = 10/99 (10%)
Query: 42 IVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSS------ 95
++ PT G + E KN F + DVGG R W F + F+V SS
Sbjct: 158 LLARRPTKGIHEYDFEIKNVPFKMVDVGGLRSERKRWFECFDSVTSILFLVSSSEFDQVL 217
Query: 96 --DRE--RISEARNELHQILSDNELSNAALLVFANKQDL 130
DR+ R++E+ N I+++ SN ++++F NK DL
Sbjct: 218 MEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDL 256
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 66/162 (40%), Gaps = 17/162 (10%)
Query: 18 IKLLMVGLDASGKTTILY-----KMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQN 72
K L++G +GK+ +L+ K K T G V V K +WD GQ
Sbjct: 26 FKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQE 85
Query: 73 KIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNEL---SNAALLVFANKQD 129
+ R++ R Y+R G V D + R E N L L+D N +++ NK+D
Sbjct: 86 RFRSVTRSYYRGAAGALLVYDITSR----ETYNSLAAWLTDARTLASPNIVVILCGNKKD 141
Query: 130 LPNVMPTAEVADKLELYSLGQR-RWSIQSCSAISGQGLYEGL 170
L P EV LE Q SA++G+ + E
Sbjct: 142 LD---PEREVT-FLEASRFAQENELMFLETSALTGENVEEAF 179
>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp
pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp And Aluminum Fluoride
pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gtp
Length = 170
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 56/122 (45%), Gaps = 6/122 (4%)
Query: 16 CRIKLLMVGLDASGKTTILYKMKLG---EIVTTTPTIGFNVEAVEYKNKS--FCVWDVGG 70
C+ KL+++G GK++++ + G E +T F + V + + F +WD G
Sbjct: 5 CQFKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAG 64
Query: 71 QNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDL 130
Q + +L Y+R V D ++ E + A+N + + L N + + NK DL
Sbjct: 65 QERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKE-LQRQASPNIVIALSGNKADL 123
Query: 131 PN 132
N
Sbjct: 124 AN 125
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 65/137 (47%), Gaps = 16/137 (11%)
Query: 2 GKLISRLAKRFFPQCRIKLLMVGLDASGKTTILYKM---KLGEIVTTTPTIGFNVEAVEY 58
G L+ R ++ + K++++G GKT+++ + K + TT F + +
Sbjct: 9 GSLVPRGSRAY----SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNI 64
Query: 59 KNK--SFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARN---ELHQILSD 113
K + +WD GQ + AL Y+RD+ G V D +D + + +N EL ++L
Sbjct: 65 GGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLG- 123
Query: 114 NELSNAALLVFANKQDL 130
NE+ L + NK DL
Sbjct: 124 NEI---CLCIVGNKIDL 137
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 62/133 (46%), Gaps = 6/133 (4%)
Query: 9 AKRFFPQCRIKLLMVGLDASGKTTILYKM---KLGEIVTTTPTIGFNVEA--VEYKNKSF 63
AK F Q K+++ G A GK++ L ++ + E ++ T + F ++ V+ +
Sbjct: 20 AKSFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVL 79
Query: 64 CVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLV 123
+WD GQ + R++ + YFR G+ + D + + R E ++ D +++
Sbjct: 80 QLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIR-EWVDMIEDAAHETVPIML 138
Query: 124 FANKQDLPNVMPT 136
NK D+ + T
Sbjct: 139 VGNKADIRDTAAT 151
>pdb|3C7K|A Chain A, Molecular Architecture Of Galphao And The Structural Basis
For Rgs16-Mediated Deactivation
pdb|3C7K|C Chain C, Molecular Architecture Of Galphao And The Structural Basis
For Rgs16-Mediated Deactivation
Length = 333
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 10/97 (10%)
Query: 44 TTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERI--- 100
T T G +KN F ++DVGGQ R W H F D + F V S +++
Sbjct: 157 TRVKTTGIVETHFTFKNLHFRLFDVGGQRSERKKWIHCFEDVTAIIFCVALSGYDQVLHE 216
Query: 101 SEARNELHQ-------ILSDNELSNAALLVFANKQDL 130
E N +H+ I ++ + ++++F NK+DL
Sbjct: 217 DETTNRMHESLMLFDSICNNKFFIDTSIILFLNKKDL 253
Score = 27.7 bits (60), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 53/108 (49%), Gaps = 19/108 (17%)
Query: 18 IKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAV-EYKNKSFCVWDVGGQNKIRA 76
+KLL++G SGK+TI+ +MK+ GF+ E V +YK + +RA
Sbjct: 13 VKLLLLGAGESGKSTIVKQMKI------IHEDGFSGEDVKQYKPVVYSNTIQSLAAIVRA 66
Query: 77 LWRHYFRDTLGLTFVVDSSDRERISEARNELHQI--LSDNELSNAALL 122
+ DTLG V+ D+ER ++++ + + D E +A LL
Sbjct: 67 M------DTLG----VEYGDKERKTDSKMVCDVVSRMEDTEPFSAELL 104
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With
Gppnhp
Length = 170
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 56/122 (45%), Gaps = 6/122 (4%)
Query: 16 CRIKLLMVGLDASGKTTILYKMKLG---EIVTTTPTIGFNVEAVEYKNKS--FCVWDVGG 70
C+ KL+++G GK++++ + G E +T F + V + + F +WD G
Sbjct: 5 CQFKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAG 64
Query: 71 QNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDL 130
Q + +L Y+R V D ++ E + A+N + + L N + + NK DL
Sbjct: 65 QERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKE-LQRQASPNIVIALSGNKADL 123
Query: 131 PN 132
N
Sbjct: 124 AN 125
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With
Gppnhp
Length = 170
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 56/122 (45%), Gaps = 6/122 (4%)
Query: 16 CRIKLLMVGLDASGKTTILYKMKLG---EIVTTTPTIGFNVEAVEYKNKS--FCVWDVGG 70
C+ KL+++G GK++++ + G E +T F + V + + F +WD G
Sbjct: 5 CQFKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAG 64
Query: 71 QNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDL 130
Q + +L Y+R V D ++ E + A+N + + L N + + NK DL
Sbjct: 65 QERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKE-LQRQASPNIVIALSGNKADL 123
Query: 131 PN 132
N
Sbjct: 124 AN 125
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With
Gppnhp
Length = 170
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 56/122 (45%), Gaps = 6/122 (4%)
Query: 16 CRIKLLMVGLDASGKTTILYKMKLG---EIVTTTPTIGFNVEAVEYKNKS--FCVWDVGG 70
C+ KL+++G GK++++ + G E +T F + V + + F +WD G
Sbjct: 5 CQFKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAG 64
Query: 71 QNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDL 130
Q + +L Y+R V D ++ E + A+N + + L N + + NK DL
Sbjct: 65 QERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKE-LQRQASPNIVIALSGNKADL 123
Query: 131 PN 132
N
Sbjct: 124 AN 125
>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With
Gppnhp
Length = 170
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 56/122 (45%), Gaps = 6/122 (4%)
Query: 16 CRIKLLMVGLDASGKTTILYKMKLG---EIVTTTPTIGFNVEAVEYKNKS--FCVWDVGG 70
C+ KL+++G GK++++ + G E +T F + V + + F +WD G
Sbjct: 5 CQFKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAG 64
Query: 71 QNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDL 130
Q + +L Y+R V D ++ E + A+N + + L N + + NK DL
Sbjct: 65 QERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKE-LQRQASPNIVIALSGNKADL 123
Query: 131 PN 132
N
Sbjct: 124 AN 125
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 55/121 (45%), Gaps = 12/121 (9%)
Query: 18 IKLLMVGLDASGKTTILYKM---KLGEIVTTTPTIGFNVEAVEYKNK--SFCVWDVGGQN 72
K L++G +GK+ +L++ K + T + F + + K +WD GQ
Sbjct: 11 FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 70
Query: 73 KIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNEL---SNAALLVFANKQD 129
+ R++ R Y+R G V D + R E N L L+D + N +++ NK+D
Sbjct: 71 RFRSVTRSYYRGAAGALLVYDITSR----ETYNALTNWLTDARMLASQNIVIILCGNKKD 126
Query: 130 L 130
L
Sbjct: 127 L 127
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 60/138 (43%), Gaps = 8/138 (5%)
Query: 18 IKLLMVGLDASGKTTILYKMKLG---EIVTTTPTIGFNVEAVEYKNK--SFCVWDVGGQN 72
KL++VG + GKT ++ + K G E +T + F ++ +E + K +WD GQ
Sbjct: 30 FKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQE 89
Query: 73 KIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPN 132
+ R + + Y+R G D + R + + + SN L+ NK DL
Sbjct: 90 RFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDV-RKYAGSNIVQLLIGNKSDLSE 148
Query: 133 V--MPTAEVADKLELYSL 148
+ + AE E Y +
Sbjct: 149 LREVSLAEAQSLAEHYDI 166
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 55/121 (45%), Gaps = 12/121 (9%)
Query: 18 IKLLMVGLDASGKTTILYKM---KLGEIVTTTPTIGFNVEAVEYKNK--SFCVWDVGGQN 72
K L++G +GK+ +L++ K + T + F + + K +WD GQ
Sbjct: 12 FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 71
Query: 73 KIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNEL---SNAALLVFANKQD 129
+ R++ R Y+R G V D + R E N L L+D + N +++ NK+D
Sbjct: 72 RFRSVTRSYYRGAAGALLVYDITSR----ETYNALTNWLTDARMLASQNIVIILCGNKKD 127
Query: 130 L 130
L
Sbjct: 128 L 128
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 61/123 (49%), Gaps = 8/123 (6%)
Query: 16 CRIKLLMVGLDASGKTTILYKMKLG---EIVTTTPTIGFNVEAVEYKNKS--FCVWDVGG 70
C+ KL+++G A GK++++ + G E +T F ++V + + F +WD G
Sbjct: 7 CQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAG 66
Query: 71 QNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFA-NKQD 129
Q + +L Y+R V D +++E + A+ + ++ + S + ++ A NK D
Sbjct: 67 QERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKEL--QRQASPSIVIALAGNKAD 124
Query: 130 LPN 132
L N
Sbjct: 125 LAN 127
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 51/122 (41%), Gaps = 7/122 (5%)
Query: 14 PQCRIKLLMVGLDASGKTTILYKMKLGEIVTT-TPTIGFNVEAVEYKNK----SFCVWDV 68
PQ + KL++VG +GKTT + + GE PT+G V + + F VWD
Sbjct: 7 PQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDT 66
Query: 69 GGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQ 128
GQ K L Y+ + D + R N ++ E N +++ NK
Sbjct: 67 AGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE--NIPIVLCGNKV 124
Query: 129 DL 130
D+
Sbjct: 125 DI 126
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 58/122 (47%), Gaps = 12/122 (9%)
Query: 18 IKLLMVGLDASGKTTILYKM---KLGEIVTTTPTIGFNVEAVEYKNK--SFCVWDVGGQN 72
K++++G GKT+++ + K + TT F + + K + +WD GQ
Sbjct: 7 FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQE 66
Query: 73 KIRALWRHYFRDTLGLTFVVDSSDRERISEARN---ELHQILSDNELSNAALLVFANKQD 129
+ AL Y+RD+ G V D +D + + +N EL ++L NE+ L + NK D
Sbjct: 67 RFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLG-NEI---CLCIVGNKID 122
Query: 130 LP 131
L
Sbjct: 123 LE 124
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 53/121 (43%), Gaps = 12/121 (9%)
Query: 18 IKLLMVGLDASGKTTILYKMKLGEIVTTTP-TIG--FNVEAVEYKNKS--FCVWDVGGQN 72
K +++G GK+ +L++ + + P TIG F +E + +WD GQ
Sbjct: 31 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQG 90
Query: 73 KIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNE---LSNAALLVFANKQD 129
+ RA+ R Y+R G V D + R N L L+D N +++ NK D
Sbjct: 91 RFRAVTRSYYRGAAGALMVYDITRR----STYNHLSSWLTDARNLTNPNTVIILIGNKAD 146
Query: 130 L 130
L
Sbjct: 147 L 147
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 58/122 (47%), Gaps = 12/122 (9%)
Query: 18 IKLLMVGLDASGKTTILYKM---KLGEIVTTTPTIGFNVEAVEYKNK--SFCVWDVGGQN 72
K++++G GKT+++ + K + TT F + + K + +WD GQ
Sbjct: 7 FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQE 66
Query: 73 KIRALWRHYFRDTLGLTFVVDSSDRERISEARN---ELHQILSDNELSNAALLVFANKQD 129
+ AL Y+RD+ G V D +D + + +N EL ++L NE+ L + NK D
Sbjct: 67 RFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLG-NEI---CLCIVGNKID 122
Query: 130 LP 131
L
Sbjct: 123 LE 124
>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
pdb|3MJH|C Chain C, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
Length = 168
Score = 43.5 bits (101), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 56/122 (45%), Gaps = 6/122 (4%)
Query: 16 CRIKLLMVGLDASGKTTILYKMKLG---EIVTTTPTIGFNVEAVEYKNKS--FCVWDVGG 70
C+ KL+++G A GK++++ + G E +T F + V + + F +WD G
Sbjct: 4 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAG 63
Query: 71 QNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDL 130
+ +L Y+R V D ++ E + A+N + + L N + + NK DL
Sbjct: 64 LERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKE-LQRQASPNIVIALSGNKADL 122
Query: 131 PN 132
N
Sbjct: 123 AN 124
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 43.5 bits (101), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 51/122 (41%), Gaps = 7/122 (5%)
Query: 14 PQCRIKLLMVGLDASGKTTILYKMKLGEIVTT-TPTIGFNVEAVEYKNK----SFCVWDV 68
PQ + KL++VG +GKTT + + GE PT+G V + + F VWD
Sbjct: 7 PQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDT 66
Query: 69 GGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQ 128
GQ K L Y+ + D + R N ++ E N +++ NK
Sbjct: 67 AGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE--NIPIVLCGNKV 124
Query: 129 DL 130
D+
Sbjct: 125 DI 126
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 43.5 bits (101), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 57/119 (47%), Gaps = 8/119 (6%)
Query: 17 RIKLLMVGLDASGKTTILYKMK---LGEIVTTTPTIGFNVEAVEYKNKS--FCVWDVGGQ 71
+++++++G GKT+++ + E +T + F ++ VE + K +WD GQ
Sbjct: 26 KLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQ 85
Query: 72 NKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELS-NAALLVFANKQD 129
+ ++ Y+R G+ V D + +E + + I D S +A LL+ NK D
Sbjct: 86 ERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMI--DKYASEDAELLLVGNKLD 142
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 43.5 bits (101), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 53/121 (43%), Gaps = 12/121 (9%)
Query: 18 IKLLMVGLDASGKTTILYKMKLGEIVTTTP-TIG--FNVEAVEYKNKS--FCVWDVGGQN 72
K +++G GK+ +L++ + + P TIG F +E + +WD GQ
Sbjct: 16 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQE 75
Query: 73 KIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNE---LSNAALLVFANKQD 129
+ RA+ R Y+R G V D + R N L L+D N +++ NK D
Sbjct: 76 RFRAVTRSYYRGAAGALMVYDITRR----STYNHLSSWLTDARNLTNPNTVIILIGNKAD 131
Query: 130 L 130
L
Sbjct: 132 L 132
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 43.1 bits (100), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 60/127 (47%), Gaps = 8/127 (6%)
Query: 19 KLLMVGLDASGKTTILYKMKLGEI-VTTTPTIG--FNVEAVEYKNKSF--CVWDVGGQNK 73
K++++G GK+ +L + E + + TIG F +++ K+ +WD GQ +
Sbjct: 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQER 66
Query: 74 IRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV 133
R + Y+R +G V D + L + L D+ SN +++ NK DL ++
Sbjct: 67 YRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKE-LRDHADSNIVIMLVGNKSDLRHL 125
Query: 134 --MPTAE 138
+PT E
Sbjct: 126 RAVPTDE 132
>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
Length = 166
Score = 43.1 bits (100), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 57/122 (46%), Gaps = 6/122 (4%)
Query: 16 CRIKLLMVGLDASGKTTILYKMKLG---EIVTTTPTIGFNVEAVEYKNKS--FCVWDVGG 70
C+ KL+++G A GK++++ + G E +T F + V + + F +WD G
Sbjct: 4 CQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTAG 63
Query: 71 QNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDL 130
Q + +L Y+R V D ++ + + A+N + + L N + + NK DL
Sbjct: 64 QERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKE-LQRQASPNIVIALAGNKADL 122
Query: 131 PN 132
+
Sbjct: 123 AS 124
>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex
With Gtpgammas
pdb|1OIX|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp And Pi
Length = 191
Score = 43.1 bits (100), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 60/127 (47%), Gaps = 8/127 (6%)
Query: 19 KLLMVGLDASGKTTILYKMKLGEI-VTTTPTIG--FNVEAVEYKNKSF--CVWDVGGQNK 73
K++++G GK+ +L + E + + TIG F +++ K+ +WD G +
Sbjct: 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLER 90
Query: 74 IRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV 133
RA+ Y+R +G V D + L + L D+ SN +++ NK DL ++
Sbjct: 91 YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKE-LRDHADSNIVIMLVGNKSDLRHL 149
Query: 134 --MPTAE 138
+PT E
Sbjct: 150 RAVPTDE 156
>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|B Chain B, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|C Chain C, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
Length = 172
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 60/127 (47%), Gaps = 8/127 (6%)
Query: 19 KLLMVGLDASGKTTILYKMKLGEI-VTTTPTIG--FNVEAVEYKNKSF--CVWDVGGQNK 73
K++++G GK+ +L + E + + TIG F +++ K+ +WD G +
Sbjct: 10 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLER 69
Query: 74 IRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV 133
RA+ Y+R +G V D + L + L D+ SN +++ NK DL ++
Sbjct: 70 YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKE-LRDHADSNIVIMLVGNKSDLRHL 128
Query: 134 --MPTAE 138
+PT E
Sbjct: 129 RAVPTDE 135
>pdb|2GTP|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs1 And Activated Gi Alpha 1
pdb|2GTP|B Chain B, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs1 And Activated Gi Alpha 1
Length = 323
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 10/97 (10%)
Query: 44 TTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERI--- 100
T T G +K+ F ++DVGGQ R W H F + F V SD + +
Sbjct: 146 TRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 205
Query: 101 SEARNELHQ-------ILSDNELSNAALLVFANKQDL 130
E N +H+ I ++ ++ ++++F NK+DL
Sbjct: 206 DEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 242
Score = 26.9 bits (58), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 18/22 (81%)
Query: 18 IKLLMVGLDASGKTTILYKMKL 39
+KLL++G SGK+TI+ +MK+
Sbjct: 3 VKLLLLGAGESGKSTIVKQMKI 24
>pdb|2G83|A Chain A, Structure Of Activated G-alpha-i1 Bound To A Nucleotide-
State-selective Peptide: Minimal Determinants For
Recognizing The Active Form Of A G Protein Alpha Subunit
pdb|2G83|B Chain B, Structure Of Activated G-alpha-i1 Bound To A Nucleotide-
State-selective Peptide: Minimal Determinants For
Recognizing The Active Form Of A G Protein Alpha Subunit
Length = 313
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 10/97 (10%)
Query: 44 TTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERI--- 100
T T G +K+ F ++DVGGQ R W H F + F V SD + +
Sbjct: 145 TRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 204
Query: 101 SEARNELHQ-------ILSDNELSNAALLVFANKQDL 130
E N +H+ I ++ ++ ++++F NK+DL
Sbjct: 205 DEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 241
Score = 27.3 bits (59), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 18/22 (81%)
Query: 18 IKLLMVGLDASGKTTILYKMKL 39
+KLL++G SGK+TI+ +MK+
Sbjct: 2 VKLLLLGAGESGKSTIVKQMKI 23
>pdb|1Y3A|A Chain A, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
pdb|1Y3A|B Chain B, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
pdb|1Y3A|C Chain C, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
pdb|1Y3A|D Chain D, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
Length = 329
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 10/97 (10%)
Query: 44 TTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERI--- 100
T T G +K+ F ++DVGGQ R W H F + F V SD + +
Sbjct: 152 TRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 211
Query: 101 SEARNELHQ-------ILSDNELSNAALLVFANKQDL 130
E N +H+ I ++ ++ ++++F NK+DL
Sbjct: 212 DEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 248
Score = 27.3 bits (59), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 18/22 (81%)
Query: 18 IKLLMVGLDASGKTTILYKMKL 39
+KLL++G SGK+TI+ +MK+
Sbjct: 9 VKLLLLGAGESGKSTIVKQMKI 30
>pdb|1KJY|A Chain A, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
pdb|1KJY|C Chain C, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
pdb|2OM2|A Chain A, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
pdb|2OM2|C Chain C, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
Length = 325
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 10/97 (10%)
Query: 44 TTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERI--- 100
T T G +K+ F ++DVGGQ R W H F + F V SD + +
Sbjct: 148 TRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 207
Query: 101 SEARNELHQ-------ILSDNELSNAALLVFANKQDL 130
E N +H+ I ++ ++ ++++F NK+DL
Sbjct: 208 DEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 244
Score = 26.9 bits (58), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 18/22 (81%)
Query: 18 IKLLMVGLDASGKTTILYKMKL 39
+KLL++G SGK+TI+ +MK+
Sbjct: 5 VKLLLLGAGESGKSTIVKQMKI 26
>pdb|3ONW|A Chain A, Structure Of A G-Alpha-I1 Mutant With Enhanced Affinity
For The Rgs14 Goloco Motif.
pdb|3ONW|B Chain B, Structure Of A G-Alpha-I1 Mutant With Enhanced Affinity
For The Rgs14 Goloco Motif
Length = 328
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 10/97 (10%)
Query: 44 TTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERI--- 100
T T G +K+ F ++DVGGQ R W H F + F V SD + +
Sbjct: 151 TRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 210
Query: 101 SEARNELHQ-------ILSDNELSNAALLVFANKQDL 130
E N +H+ I ++ ++ ++++F NK+DL
Sbjct: 211 DEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 247
Score = 27.3 bits (59), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 18/22 (81%)
Query: 18 IKLLMVGLDASGKTTILYKMKL 39
+KLL++G SGK+TI+ +MK+
Sbjct: 8 VKLLLLGAGESGKSTIVKQMKI 29
>pdb|3D7M|A Chain A, Crystal Structure Of The G Protein Fast-Exchange Double
Mutant I56cQ333C
Length = 354
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 10/97 (10%)
Query: 44 TTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERI--- 100
T T G +K+ F ++DVGGQ R W H F + F V SD + +
Sbjct: 177 TRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 236
Query: 101 SEARNELHQ-------ILSDNELSNAALLVFANKQDL 130
E N +H+ I ++ ++ ++++F NK+DL
Sbjct: 237 DEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 273
Score = 27.3 bits (59), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 18 IKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKN 60
+KLL++G SGK+TI+ +MK+ + +AV Y N
Sbjct: 34 VKLLLLGAGESGKSTIVKQMKICHEAGYSEEECKQYKAVVYSN 76
>pdb|1BH2|A Chain A, A326s Mutant Of An Inhibitory Alpha Subunit
Length = 315
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 10/97 (10%)
Query: 44 TTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERI--- 100
T T G +K+ F ++DVGGQ R W H F + F V SD + +
Sbjct: 146 TRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 205
Query: 101 SEARNELHQ-------ILSDNELSNAALLVFANKQDL 130
E N +H+ I ++ ++ ++++F NK+DL
Sbjct: 206 DEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 242
Score = 27.3 bits (59), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 18/22 (81%)
Query: 18 IKLLMVGLDASGKTTILYKMKL 39
+KLL++G SGK+TI+ +MK+
Sbjct: 3 VKLLLLGAGESGKSTIVKQMKI 24
>pdb|4G5Q|A Chain A, Structure Of Lgn Gl4GALPHAI1 COMPLEX
pdb|4G5Q|B Chain B, Structure Of Lgn Gl4GALPHAI1 COMPLEX
pdb|4G5Q|C Chain C, Structure Of Lgn Gl4GALPHAI1 COMPLEX
pdb|4G5Q|D Chain D, Structure Of Lgn Gl4GALPHAI1 COMPLEX
Length = 330
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 10/97 (10%)
Query: 44 TTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERI--- 100
T T G +K+ F ++DVGGQ R W H F + F V SD + +
Sbjct: 153 TRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 212
Query: 101 SEARNELHQ-------ILSDNELSNAALLVFANKQDL 130
E N +H+ I ++ ++ ++++F NK+DL
Sbjct: 213 DEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 249
Score = 27.3 bits (59), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 18/22 (81%)
Query: 18 IKLLMVGLDASGKTTILYKMKL 39
+KLL++G SGK+TI+ +MK+
Sbjct: 10 VKLLLLGAGESGKSTIVKQMKI 31
>pdb|2XNS|A Chain A, Crystal Structure Of Human G Alpha I1 Bound To A Designed
Helical Peptide Derived From The Goloco Motif Of Rgs14
pdb|2XNS|B Chain B, Crystal Structure Of Human G Alpha I1 Bound To A Designed
Helical Peptide Derived From The Goloco Motif Of Rgs14
Length = 327
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 10/97 (10%)
Query: 44 TTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERI--- 100
T T G +K+ F ++DVGGQ R W H F + F V SD + +
Sbjct: 150 TRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 209
Query: 101 SEARNELHQ-------ILSDNELSNAALLVFANKQDL 130
E N +H+ I ++ ++ ++++F NK+DL
Sbjct: 210 DEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 246
Score = 27.3 bits (59), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 18/22 (81%)
Query: 18 IKLLMVGLDASGKTTILYKMKL 39
+KLL++G SGK+TI+ +MK+
Sbjct: 7 VKLLLLGAGESGKSTIVKQMKI 28
>pdb|2ZJY|A Chain A, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound
To Alf4 And Gdp
pdb|2ZJZ|A Chain A, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound
To Gdp
pdb|2ZJZ|B Chain B, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound
To Gdp
Length = 356
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 10/97 (10%)
Query: 44 TTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERI--- 100
T T G +K+ F ++DVGGQ R W H F + F V SD + +
Sbjct: 179 TRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 238
Query: 101 SEARNELHQ-------ILSDNELSNAALLVFANKQDL 130
E N +H+ I ++ ++ ++++F NK+DL
Sbjct: 239 DEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 275
Score = 27.3 bits (59), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 18/22 (81%)
Query: 18 IKLLMVGLDASGKTTILYKMKL 39
+KLL++G SGK+TI+ +MK+
Sbjct: 36 VKLLLLGAGESGKSTIVKQMKI 57
>pdb|2IK8|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs16 And Activated Gi Alpha 1
pdb|2IK8|C Chain C, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs16 And Activated Gi Alpha 1
Length = 324
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 10/97 (10%)
Query: 44 TTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERI--- 100
T T G +K+ F ++DVGGQ R W H F + F V SD + +
Sbjct: 147 TRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 206
Query: 101 SEARNELHQ-------ILSDNELSNAALLVFANKQDL 130
E N +H+ I ++ ++ ++++F NK+DL
Sbjct: 207 DEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 243
Score = 26.9 bits (58), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 18/22 (81%)
Query: 18 IKLLMVGLDASGKTTILYKMKL 39
+KLL++G SGK+TI+ +MK+
Sbjct: 4 VKLLLLGAGESGKSTIVKQMKI 25
>pdb|3QI2|A Chain A, A Galpha P-Loop Mutation Prevents Transition To The
Activated State: G42r Bound To Rgs14 Goloco
pdb|3QI2|B Chain B, A Galpha P-Loop Mutation Prevents Transition To The
Activated State: G42r Bound To Rgs14 Goloco
Length = 328
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 10/97 (10%)
Query: 44 TTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERI--- 100
T T G +K+ F ++DVGGQ R W H F + F V SD + +
Sbjct: 151 TRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 210
Query: 101 SEARNELHQ-------ILSDNELSNAALLVFANKQDL 130
E N +H+ I ++ ++ ++++F NK+DL
Sbjct: 211 DEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 247
Score = 26.9 bits (58), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 18/22 (81%)
Query: 18 IKLLMVGLDASGKTTILYKMKL 39
+KLL++G SGK+TI+ +MK+
Sbjct: 8 VKLLLLGARESGKSTIVKQMKI 29
>pdb|3QE0|A Chain A, A Galpha-I1 P-Loop Mutation Prevents Transition To The
Activated State
pdb|3QE0|B Chain B, A Galpha-I1 P-Loop Mutation Prevents Transition To The
Activated State
pdb|3QE0|C Chain C, A Galpha-I1 P-Loop Mutation Prevents Transition To The
Activated State
Length = 325
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 10/97 (10%)
Query: 44 TTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERI--- 100
T T G +K+ F ++DVGGQ R W H F + F V SD + +
Sbjct: 148 TRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 207
Query: 101 SEARNELHQ-------ILSDNELSNAALLVFANKQDL 130
E N +H+ I ++ ++ ++++F NK+DL
Sbjct: 208 DEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 244
Score = 26.9 bits (58), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 18/22 (81%)
Query: 18 IKLLMVGLDASGKTTILYKMKL 39
+KLL++G SGK+TI+ +MK+
Sbjct: 5 VKLLLLGARESGKSTIVKQMKI 26
>pdb|3FFA|A Chain A, Crystal Structure Of A Fast Activating G Protein Mutant
pdb|3FFB|A Chain A, Gi-Alpha-1 Mutant In Gdp Bound Form
Length = 360
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 10/97 (10%)
Query: 44 TTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERI--- 100
T T G +K+ F ++DVGGQ R W H F + F V SD + +
Sbjct: 183 TRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 242
Query: 101 SEARNELHQ-------ILSDNELSNAALLVFANKQDL 130
E N +H+ I ++ ++ ++++F NK+DL
Sbjct: 243 DEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 279
Score = 27.3 bits (59), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 18/22 (81%)
Query: 18 IKLLMVGLDASGKTTILYKMKL 39
+KLL++G SGK+TI+ +MK+
Sbjct: 40 VKLLLLGAGESGKSTIVKQMKI 61
>pdb|1GP2|A Chain A, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1AGR|A Chain A, Complex Of Alf4-Activated Gi-Alpha-1 With Rgs4
pdb|1AGR|D Chain D, Complex Of Alf4-Activated Gi-Alpha-1 With Rgs4
pdb|1CIP|A Chain A, Gi-Alpha-1 Subunit Of Guanine Nucleotide-Binding Protein
Complexed With A Gtp Analogue
pdb|1BOF|A Chain A, Gi-Alpha-1 Bound To Gdp And Magnesium
pdb|1GDD|A Chain A, Tertiary And Quaternary Structural Changes In Gia1 Induced
By Gtp Hydrolysis
pdb|1GFI|A Chain A, Structures Of Active Conformations Of Gi Alpha 1 And The
Mechanism Of Gtp Hydrolysis
pdb|1GIA|A Chain A, Structure Of Active Conformations Of Gia1 And The
Mechanism Of Gtp Hydrolysis
Length = 353
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 10/97 (10%)
Query: 44 TTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERI--- 100
T T G +K+ F ++DVGGQ R W H F + F V SD + +
Sbjct: 176 TRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 235
Query: 101 SEARNELHQ-------ILSDNELSNAALLVFANKQDL 130
E N +H+ I ++ ++ ++++F NK+DL
Sbjct: 236 DEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 272
Score = 27.3 bits (59), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 18/22 (81%)
Query: 18 IKLLMVGLDASGKTTILYKMKL 39
+KLL++G SGK+TI+ +MK+
Sbjct: 33 VKLLLLGAGESGKSTIVKQMKI 54
>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
Length = 195
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 56/123 (45%), Gaps = 11/123 (8%)
Query: 18 IKLLMVGLDASGKTTILYKMK---LGEIVTTTPTIGFNVE--AVEYKNKSFCVWDVGGQN 72
+K+L++G GK+++L + + T + F V+ +V+ +WD GQ
Sbjct: 16 LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 75
Query: 73 KIRALWRHYFRDTLGLTFVVDSSDRE---RISEARNELHQILSDNELSNAALLVFANKQD 129
+ R L Y+R G+ V D + R+ ++ NEL + N++ N + NK D
Sbjct: 76 RFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNX---LVGNKID 132
Query: 130 LPN 132
N
Sbjct: 133 KEN 135
>pdb|1FQJ|A Chain A, Crystal Structure Of The Heterotrimeric Complex Of The Rgs
Domain Of Rgs9, The Gamma Subunit Of Phosphodiesterase
And The GtI1 CHIMERA ALPHA SUBUNIT [(RGS9)-(Pdegamma)-
(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQJ|D Chain D, Crystal Structure Of The Heterotrimeric Complex Of The Rgs
Domain Of Rgs9, The Gamma Subunit Of Phosphodiesterase
And The GtI1 CHIMERA ALPHA SUBUNIT [(RGS9)-(Pdegamma)-
(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQK|A Chain A, Crystal Structure Of The Heterodimeric Complex Of The Rgs
Domain Of Rgs9, And The GtI1 CHIMERA ALPHA SUBUNIT
[(Rgs9)-(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQK|C Chain C, Crystal Structure Of The Heterodimeric Complex Of The Rgs
Domain Of Rgs9, And The GtI1 CHIMERA ALPHA SUBUNIT
[(Rgs9)-(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
Length = 325
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 10/93 (10%)
Query: 48 TIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERI---SEAR 104
T G +K+ +F ++DVGGQ R W H F + F V SD + + E
Sbjct: 152 TTGIIETQFSFKDLNFRMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEM 211
Query: 105 NELHQ-------ILSDNELSNAALLVFANKQDL 130
N +H+ I ++ ++ ++++F NK+DL
Sbjct: 212 NRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 244
Score = 26.9 bits (58), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 18/22 (81%)
Query: 18 IKLLMVGLDASGKTTILYKMKL 39
+KLL++G SGK+TI+ +MK+
Sbjct: 5 VKLLLLGAGESGKSTIVKQMKI 26
>pdb|1AS0|A Chain A, Gtp-Gamma-S Bound G42v Gia1
pdb|1AS2|A Chain A, Gdp+pi Bound G42v Gia1
pdb|1AS3|A Chain A, Gdp Bound G42v Gia1
Length = 353
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 10/97 (10%)
Query: 44 TTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERI--- 100
T T G +K+ F ++DVGGQ R W H F + F V SD + +
Sbjct: 176 TRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 235
Query: 101 SEARNELHQ-------ILSDNELSNAALLVFANKQDL 130
E N +H+ I ++ ++ ++++F NK+DL
Sbjct: 236 DEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 272
Score = 26.6 bits (57), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 18/22 (81%)
Query: 18 IKLLMVGLDASGKTTILYKMKL 39
+KLL++G SGK+TI+ +MK+
Sbjct: 33 VKLLLLGAVESGKSTIVKQMKI 54
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 57/122 (46%), Gaps = 6/122 (4%)
Query: 16 CRIKLLMVGLDASGKTTILYKMKLG---EIVTTTPTIGFNVEAVEYKNKS--FCVWDVGG 70
C+ KL+++G A GK++++ + G E +T F + V + + F +WD G
Sbjct: 2 CQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAG 61
Query: 71 QNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDL 130
Q + +L Y+R V D ++ + + A+N + + L N + + NK DL
Sbjct: 62 QERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKE-LQRQASPNIVIALAGNKADL 120
Query: 131 PN 132
+
Sbjct: 121 AS 122
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 51/123 (41%), Gaps = 12/123 (9%)
Query: 18 IKLLMVGLDASGKTTILYKM---KLGEIVTTTPTIGFNVEAVEYKNKS--FCVWDVGGQN 72
K +++G GK+ +L + + + T + F V K +WD GQ
Sbjct: 22 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQE 81
Query: 73 KIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSD---NELSNAALLVFANKQD 129
R++ R Y+R G V D + RE N L L D + SN +++ NK D
Sbjct: 82 SFRSITRSYYRGAAGALLVYDITRRETF----NHLTSWLEDARQHSSSNMVIMLIGNKSD 137
Query: 130 LPN 132
L +
Sbjct: 138 LES 140
>pdb|1CUL|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2',5'-Dideoxy-Adenosine 3'- Triphosphate And Mg
Length = 380
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 40/79 (50%), Gaps = 10/79 (12%)
Query: 62 SFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSD-----RE-----RISEARNELHQIL 111
+F ++DVGGQ R W F D + FVV SS RE R+ EA N I
Sbjct: 204 NFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIW 263
Query: 112 SDNELSNAALLVFANKQDL 130
++ L ++++F NKQDL
Sbjct: 264 NNRWLRTISVILFLNKQDL 282
>pdb|3V00|C Chain C, Studies Of A Constitutively Active G-Alpha Subunit Provide
Insights Into The Mechanism Of G Protein Activation.
pdb|3V00|B Chain B, Studies Of A Constitutively Active G-Alpha Subunit Provide
Insights Into The Mechanism Of G Protein Activation.
pdb|3V00|A Chain A, Studies Of A Constitutively Active G-Alpha Subunit Provide
Insights Into The Mechanism Of G Protein Activation
Length = 356
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 10/93 (10%)
Query: 48 TIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERI---SEAR 104
T G +K+ +F ++DVGGQ R W H F + F V SD + + E
Sbjct: 183 TTGIIETQFSFKDLNFRMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEM 242
Query: 105 NELHQ-------ILSDNELSNAALLVFANKQDL 130
N +H+ I ++ ++ ++++F NK+DL
Sbjct: 243 NRMHESMHLFNSICNNKWFTDTSIILFLNKKDL 275
Score = 26.9 bits (58), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 18/22 (81%)
Query: 18 IKLLMVGLDASGKTTILYKMKL 39
+KLL++G SGK+TI+ +MK+
Sbjct: 36 VKLLLLGAGESGKSTIVKQMKI 57
>pdb|3SN6|A Chain A, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 380
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 40/79 (50%), Gaps = 10/79 (12%)
Query: 62 SFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSD-----RE-----RISEARNELHQIL 111
+F ++DVGGQ R W F D + FVV SS RE R+ EA N I
Sbjct: 204 NFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIW 263
Query: 112 SDNELSNAALLVFANKQDL 130
++ L ++++F NKQDL
Sbjct: 264 NNRWLRTISVILFLNKQDL 282
>pdb|1SHZ|A Chain A, Crystal Structure Of The P115rhogef Rgrgs Domain In A
Complex With Galpha(13):galpha(i1) Chimera
pdb|1SHZ|D Chain D, Crystal Structure Of The P115rhogef Rgrgs Domain In A
Complex With Galpha(13):galpha(i1) Chimera
Length = 340
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 47/99 (47%), Gaps = 10/99 (10%)
Query: 42 IVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERI- 100
++ PT G + +K+ F ++DVGGQ R W F + F V SD +++
Sbjct: 161 LLARRPTKGIHETHFTFKDLHFKMFDVGGQRSERKKWFECFEGVTAIIFCVALSDYDQVL 220
Query: 101 --SEARNELHQ-------ILSDNELSNAALLVFANKQDL 130
N +H+ I ++ ++ ++++F NK+DL
Sbjct: 221 MEDRQTNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 259
>pdb|1AZS|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase
pdb|1AZT|A Chain A, Gs-Alpha Complexed With Gtp-Gamma-S
pdb|1AZT|B Chain B, Gs-Alpha Complexed With Gtp-Gamma-S
pdb|3C14|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Ca
pdb|3C15|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Mg
pdb|3C16|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Adenosine-5'-Triphosphate And Ca
Length = 402
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 40/79 (50%), Gaps = 10/79 (12%)
Query: 62 SFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSD-----RE-----RISEARNELHQIL 111
+F ++DVGGQ R W F D + FVV SS RE R+ EA N I
Sbjct: 218 NFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIW 277
Query: 112 SDNELSNAALLVFANKQDL 130
++ L ++++F NKQDL
Sbjct: 278 NNRWLRTISVILFLNKQDL 296
>pdb|1CS4|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2'-Deoxy-Adenosine 3'- Monophosphate, Pyrophosphate And
Mg
pdb|1U0H|C Chain C, Structural Basis For The Inhibition Of Mammalian Adenylyl
Cyclase By Mant-gtp
pdb|2GVD|C Chain C, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With Tnp-Atp And Mn
pdb|2GVZ|C Chain C, Crystal Structure Of Complex Of Gs- With The Catalytic
Domains Of Mammalian Adenylyl Cyclase: Complex With
Mant- Atp And Mn
pdb|3G82|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Mant-Itp And Mn
pdb|3MAA|C Chain C, Complex Of Gs-alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5-o-(l-thiophosphate) And Low Ca Concentration
Length = 394
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 40/79 (50%), Gaps = 10/79 (12%)
Query: 62 SFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSD-----RE-----RISEARNELHQIL 111
+F ++DVGGQ R W F D + FVV SS RE R+ EA N I
Sbjct: 218 NFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIW 277
Query: 112 SDNELSNAALLVFANKQDL 130
++ L ++++F NKQDL
Sbjct: 278 NNRWLRTISVILFLNKQDL 296
>pdb|1CJK|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5'-(Alpha Thio)-Triphosphate (Rp), Mg, And Mn
pdb|1CJT|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mn, And Mg
pdb|1CJU|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp And Mg
pdb|1CJV|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mg, And Zn
pdb|1TL7|C Chain C, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With 2'(3')-O-(N-
Methylanthraniloyl)-Guanosine 5'-Triphosphate And Mn
Length = 402
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 40/79 (50%), Gaps = 10/79 (12%)
Query: 62 SFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSD-----RE-----RISEARNELHQIL 111
+F ++DVGGQ R W F D + FVV SS RE R+ EA N I
Sbjct: 218 NFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIW 277
Query: 112 SDNELSNAALLVFANKQDL 130
++ L ++++F NKQDL
Sbjct: 278 NNRWLRTISVILFLNKQDL 296
>pdb|2IHB|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs10 And Activated Gi Alpha 3
Length = 323
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 44/97 (45%), Gaps = 10/97 (10%)
Query: 44 TTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERI--- 100
T T G +K+ F ++DVGGQ R W H F + F V SD + +
Sbjct: 146 TRVKTTGIVETHFTFKDLYFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 205
Query: 101 SEARNELHQ-------ILSDNELSNAALLVFANKQDL 130
E N +H+ I ++ + ++++F NK+DL
Sbjct: 206 DEEMNRMHESMKLFDSICNNKWFTETSIILFLNKKDL 242
Score = 26.9 bits (58), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 18/22 (81%)
Query: 18 IKLLMVGLDASGKTTILYKMKL 39
+KLL++G SGK+TI+ +MK+
Sbjct: 3 VKLLLLGAGESGKSTIVKQMKI 24
>pdb|4G5O|A Chain A, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
pdb|4G5O|B Chain B, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
pdb|4G5O|C Chain C, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
pdb|4G5O|D Chain D, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
Length = 330
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 44/97 (45%), Gaps = 10/97 (10%)
Query: 44 TTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERI--- 100
T T G +K+ F ++DVGGQ R W H F + F V SD + +
Sbjct: 153 TRVKTTGIVETHFTFKDLYFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 212
Query: 101 SEARNELHQ-------ILSDNELSNAALLVFANKQDL 130
E N +H+ I ++ + ++++F NK+DL
Sbjct: 213 DEEMNRMHESMKLFDSICNNKWFTETSIILFLNKKDL 249
Score = 26.9 bits (58), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 18/22 (81%)
Query: 18 IKLLMVGLDASGKTTILYKMKL 39
+KLL++G SGK+TI+ +MK+
Sbjct: 10 VKLLLLGAGESGKSTIVKQMKI 31
>pdb|4G5R|A Chain A, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5R|B Chain B, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5R|C Chain C, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5R|D Chain D, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5S|A Chain A, Structure Of Lgn Gl3GALPHAI3 COMPLEX
pdb|4G5S|B Chain B, Structure Of Lgn Gl3GALPHAI3 COMPLEX
pdb|4G5S|C Chain C, Structure Of Lgn Gl3GALPHAI3 COMPLEX
pdb|4G5S|D Chain D, Structure Of Lgn Gl3GALPHAI3 COMPLEX
Length = 330
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 44/97 (45%), Gaps = 10/97 (10%)
Query: 44 TTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERI--- 100
T T G +K+ F ++DVGGQ R W H F + F V SD + +
Sbjct: 153 TRVKTTGIVETHFTFKDLYFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 212
Query: 101 SEARNELHQ-------ILSDNELSNAALLVFANKQDL 130
E N +H+ I ++ + ++++F NK+DL
Sbjct: 213 DEEMNRMHESMKLFDSICNNKWFTETSIILFLNKKDL 249
Score = 27.3 bits (59), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 18/22 (81%)
Query: 18 IKLLMVGLDASGKTTILYKMKL 39
+KLL++G SGK+TI+ +MK+
Sbjct: 10 VKLLLLGAGESGKSTIVKQMKI 31
>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
pdb|2D7C|B Chain B, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
Length = 167
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 59/127 (46%), Gaps = 8/127 (6%)
Query: 19 KLLMVGLDASGKTTILYKMKLGEI-VTTTPTIG--FNVEAVEYKNKSF--CVWDVGGQNK 73
K++++G GK+ +L + E + + TIG F +++ K+ +WD G +
Sbjct: 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLER 66
Query: 74 IRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV 133
RA+ Y+R +G V D + L + L D+ SN + + NK DL ++
Sbjct: 67 YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKE-LRDHADSNIVIXLVGNKSDLRHL 125
Query: 134 --MPTAE 138
+PT E
Sbjct: 126 RAVPTDE 132
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/161 (22%), Positives = 75/161 (46%), Gaps = 10/161 (6%)
Query: 17 RIKLLMVGLDASGKTTILYKMKLGEI-VTTTPTIG--FNVEAVEYKNK--SFCVWDVGGQ 71
+K+ ++G GK++I+ + +PTIG F + V N+ F +WD GQ
Sbjct: 23 ELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQ 82
Query: 72 NKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLP 131
+ +L Y+R + V D + ++ + + + L ++ N + + NK DL
Sbjct: 83 ERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKE-LKEHGPENIVMAIAGNKCDLS 141
Query: 132 NV--MPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGL 170
++ +P + + E S+G + +AI+ + L++G+
Sbjct: 142 DIREVPLKDAKEYAE--SIGAIVVETSAKNAINIEELFQGI 180
>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZD|B Chain B, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZH|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Family
Interacting Protein 2
Length = 173
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 59/128 (46%), Gaps = 8/128 (6%)
Query: 18 IKLLMVGLDASGKTTILYKMKLGEI-VTTTPTIG--FNVEAVEYKNKSF--CVWDVGGQN 72
K++++G GK+ +L + E + + TIG F +++ K+ +WD G
Sbjct: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 71
Query: 73 KIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPN 132
+ RA+ Y+R +G V D + L + L D+ SN + + NK DL +
Sbjct: 72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKE-LRDHADSNIVIXLVGNKSDLRH 130
Query: 133 V--MPTAE 138
+ +PT E
Sbjct: 131 LRAVPTDE 138
>pdb|2ODE|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs8 And Activated Gi Alpha 3
pdb|2ODE|C Chain C, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs8 And Activated Gi Alpha 3
pdb|2V4Z|A Chain A, The Crystal Structure Of The Human G-Protein Subunit Alpha
( Gnai3) In Complex With An Engineered Regulator Of G-
Protein Signaling Type 2 Domain (Rgs2)
Length = 350
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 44/97 (45%), Gaps = 10/97 (10%)
Query: 44 TTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERI--- 100
T T G +K+ F ++DVGGQ R W H F + F V SD + +
Sbjct: 176 TRVKTTGIVETHFTFKDLYFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 235
Query: 101 SEARNELHQ-------ILSDNELSNAALLVFANKQDL 130
E N +H+ I ++ + ++++F NK+DL
Sbjct: 236 DEEMNRMHESMKLFDSICNNKWFTETSIILFLNKKDL 272
Score = 27.3 bits (59), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 18/22 (81%)
Query: 18 IKLLMVGLDASGKTTILYKMKL 39
+KLL++G SGK+TI+ +MK+
Sbjct: 33 VKLLLLGAGESGKSTIVKQMKI 54
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 54/122 (44%), Gaps = 12/122 (9%)
Query: 18 IKLLMVGLDASGKTTILYKM---KLGEIVTTTPTIGFNVEAVEYKNK--SFCVWDVGGQN 72
K L++G +GK+ +L++ K + T + F + + K +WD G
Sbjct: 9 FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGLE 68
Query: 73 KIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNEL---SNAALLVFANKQD 129
+ R++ R Y+R G V D + R E N L L+D + N +++ NK+D
Sbjct: 69 RFRSVTRSYYRGAAGALLVYDITSR----ETYNALTNWLTDARMLASQNIVIILCGNKKD 124
Query: 130 LP 131
L
Sbjct: 125 LD 126
>pdb|3OHM|A Chain A, Crystal Structure Of Activated G Alpha Q Bound To Its
Effector Phospholipase C Beta 3
Length = 327
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 10/95 (10%)
Query: 46 TPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTF----------VVDSS 95
PT G + ++ F + DVGGQ R W H F + + F +V+S
Sbjct: 152 VPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESD 211
Query: 96 DRERISEARNELHQILSDNELSNAALLVFANKQDL 130
+ R+ E++ I++ N+++++F NK+DL
Sbjct: 212 NENRMEESKALFRTIITYPWFQNSSVILFLNKKDL 246
>pdb|3AH8|A Chain A, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
Length = 355
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 10/94 (10%)
Query: 47 PTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTF----------VVDSSD 96
PT G + ++ F + DVGGQ R W H F + + F +V+S +
Sbjct: 181 PTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDN 240
Query: 97 RERISEARNELHQILSDNELSNAALLVFANKQDL 130
R+ E++ I++ N+++++F NK+DL
Sbjct: 241 ENRMEESKALFRTIITYPWFQNSSVILFLNKKDL 274
>pdb|2BCJ|Q Chain Q, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
pdb|2RGN|A Chain A, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|D Chain D, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 353
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 10/94 (10%)
Query: 47 PTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTF----------VVDSSD 96
PT G + ++ F + DVGGQ R W H F + + F +V+S +
Sbjct: 179 PTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDN 238
Query: 97 RERISEARNELHQILSDNELSNAALLVFANKQDL 130
R+ E++ I++ N+++++F NK+DL
Sbjct: 239 ENRMEESKALFRTIITYPWFQNSSVILFLNKKDL 272
>pdb|4EKC|A Chain A, Structure Of Human Regulator Of G Protein Signaling 2
(rgs2) In Complex With Murine Galpha-q(r183c)
pdb|4EKC|C Chain C, Structure Of Human Regulator Of G Protein Signaling 2
(rgs2) In Complex With Murine Galpha-q(r183c)
pdb|4EKD|A Chain A, Structure Of Human Regulator Of G Protein Signaling 2
(rgs2) In Complex With Murine Galpha-q(r183c)
Length = 347
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 10/95 (10%)
Query: 46 TPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTF----------VVDSS 95
PT G + ++ F + DVGGQ R W H F + + F +V+S
Sbjct: 172 VPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESD 231
Query: 96 DRERISEARNELHQILSDNELSNAALLVFANKQDL 130
+ R+ E++ I++ N+++++F NK+DL
Sbjct: 232 NENRMEESKALFRTIITYPWFQNSSVILFLNKKDL 266
>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal
Structure Of The Small G Protein Rab3a Complexed With
The Effector Domain Of Rabphilin-3a
Length = 203
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 8/118 (6%)
Query: 18 IKLLMVGLDASGKTTILYKM---KLGEIVTTTPTIGFNVEAVEYKNKS---FCVWDVGGQ 71
K+L++G + GKT+ L++ +T I F V+ + Y+N +WD G
Sbjct: 9 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTI-YRNDKRIKLQIWDTAGL 67
Query: 72 NKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQD 129
+ R + Y+R G D ++ E + ++ QI + NA +L+ NK D
Sbjct: 68 ERYRTITTAYYRGAXGFILXYDITNEESFNAVQDWSTQIKT-YSWDNAQVLLVGNKCD 124
>pdb|4GNK|A Chain A, Crystal Structure Of Galphaq In Complex With Full-length
Human Plcbeta3
pdb|4GNK|C Chain C, Crystal Structure Of Galphaq In Complex With Full-length
Human Plcbeta3
Length = 353
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 10/95 (10%)
Query: 46 TPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTF----------VVDSS 95
PT G + ++ F + DVGGQ R W H F + + F +V+S
Sbjct: 178 VPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESD 237
Query: 96 DRERISEARNELHQILSDNELSNAALLVFANKQDL 130
+ R+ E++ I++ N+++++F NK+DL
Sbjct: 238 NENRMEESKALFRTIITYPWFQNSSVILFLNKKDL 272
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 8/105 (7%)
Query: 18 IKLLMVGLDASGKTTILYKMKLGEIVTTT-PTIG--FNVEAVEYKNKS--FCVWDVGGQN 72
IKL+++G A GK++I+ + + PTIG F + V + F +WD GQ
Sbjct: 4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE 63
Query: 73 KIRALWRHYFRDTLGLTFVVDSSDRERISEARN---ELHQILSDN 114
+ +L Y+R+ V D + + +AR+ ELH+ S +
Sbjct: 64 RFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKD 108
>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 176
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 50/122 (40%), Gaps = 7/122 (5%)
Query: 14 PQCRIKLLMVGLDASGKTTILYKMKLGEIVTT-TPTIGFNVEAVEYKNK----SFCVWDV 68
PQ + KL++VG +GKTT + + GE T+G V + + F VWD
Sbjct: 7 PQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDT 66
Query: 69 GGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQ 128
GQ K L Y+ + D + R N ++ E N +++ NK
Sbjct: 67 AGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE--NIPIVLCGNKV 124
Query: 129 DL 130
D+
Sbjct: 125 DI 126
>pdb|3UMS|A Chain A, Crystal Structure Of The G202a Mutant Of Human G-Alpha-I1
Length = 354
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 10/97 (10%)
Query: 44 TTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERI--- 100
T T G +K+ F ++DV GQ R W H F + F V SD + +
Sbjct: 177 TRVKTTGIVETHFTFKDLHFKMFDVAGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 236
Query: 101 SEARNELHQ-------ILSDNELSNAALLVFANKQDL 130
E N +H+ I ++ ++ ++++F NK+DL
Sbjct: 237 DEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 273
Score = 27.3 bits (59), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 18/22 (81%)
Query: 18 IKLLMVGLDASGKTTILYKMKL 39
+KLL++G SGK+TI+ +MK+
Sbjct: 34 VKLLLLGAGESGKSTIVKQMKI 55
>pdb|1GG2|A Chain A, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GIT|A Chain A, Structure Of Gtp-Binding Protein
Length = 353
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 10/97 (10%)
Query: 44 TTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERI--- 100
T T G +K+ F ++DVG Q R W H F + F V SD + +
Sbjct: 176 TRVKTTGIVETHFTFKDLHFKMFDVGAQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 235
Query: 101 SEARNELHQ-------ILSDNELSNAALLVFANKQDL 130
E N +H+ I ++ ++ ++++F NK+DL
Sbjct: 236 DEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 272
Score = 27.3 bits (59), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 18/22 (81%)
Query: 18 IKLLMVGLDASGKTTILYKMKL 39
+KLL++G SGK+TI+ +MK+
Sbjct: 33 VKLLLLGAGESGKSTIVKQMKI 54
>pdb|2FH5|B Chain B, The Structure Of The Mammalian Srp Receptor
pdb|2GO5|2 Chain 2, Structure Of Signal Recognition Particle Receptor (Sr) In
Complex With Signal Recognition Particle (Srp) And
Ribosome Nascent Chain Complex
Length = 214
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 64/132 (48%), Gaps = 7/132 (5%)
Query: 20 LLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKN---KSFCVWDVGGQNKIRA 76
+L VGL SGKT + ++ G+ T +I + + N S + D+ G +R
Sbjct: 10 VLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRF 69
Query: 77 LWRHYFRDTL-GLTFVVDSSDRER-ISEARNELHQILSDN-ELSNA-ALLVFANKQDLPN 132
F+ + + FVVDS+ +R + + L+Q+L D+ L N+ +LL+ NKQD+
Sbjct: 70 QLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAM 129
Query: 133 VMPTAEVADKLE 144
+ +LE
Sbjct: 130 AKSAKLIQQQLE 141
>pdb|3UMR|A Chain A, Crystal Structure Of The G202d Mutant Of Human G-Alpha-I1
Length = 354
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 10/97 (10%)
Query: 44 TTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERI--- 100
T T G +K+ F ++DV GQ R W H F + F V SD + +
Sbjct: 177 TRVKTTGIVETHFTFKDLHFKMFDVDGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 236
Query: 101 SEARNELHQ-------ILSDNELSNAALLVFANKQDL 130
E N +H+ I ++ ++ ++++F NK+DL
Sbjct: 237 DEEMNRMHESMKLFDSICNNKCFTDTSIILFLNKKDL 273
Score = 27.3 bits (59), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 18/22 (81%)
Query: 18 IKLLMVGLDASGKTTILYKMKL 39
+KLL++G SGK+TI+ +MK+
Sbjct: 34 VKLLLLGAGESGKSTIVKQMKI 55
>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|C Chain C, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 216
Score = 40.0 bits (92), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 50/122 (40%), Gaps = 7/122 (5%)
Query: 14 PQCRIKLLMVGLDASGKTTILYKMKLGEIVTT-TPTIGFNVEAVEYKNK----SFCVWDV 68
PQ + KL++VG +GKTT + + GE T+G V + + F VWD
Sbjct: 7 PQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDT 66
Query: 69 GGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQ 128
GQ K L Y+ + D + R N ++ E N +++ NK
Sbjct: 67 AGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE--NIPIVLCGNKV 124
Query: 129 DL 130
D+
Sbjct: 125 DI 126
>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp
pdb|3GJ0|B Chain B, Crystal Structure Of Human Rangdp
pdb|3GJ3|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf2 Complex
Length = 221
Score = 40.0 bits (92), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 50/122 (40%), Gaps = 7/122 (5%)
Query: 14 PQCRIKLLMVGLDASGKTTILYKMKLGEIVTT-TPTIGFNVEAVEYKNK----SFCVWDV 68
PQ + KL++VG +GKTT + + GE T+G V + + F VWD
Sbjct: 12 PQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDT 71
Query: 69 GGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQ 128
GQ K L Y+ + D + R N ++ E N +++ NK
Sbjct: 72 AGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE--NIPIVLCGNKV 129
Query: 129 DL 130
D+
Sbjct: 130 DI 131
>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant
Length = 216
Score = 40.0 bits (92), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 50/122 (40%), Gaps = 7/122 (5%)
Query: 14 PQCRIKLLMVGLDASGKTTILYKMKLGEIVTT-TPTIGFNVEAVEYKNK----SFCVWDV 68
PQ + KL++VG +GKTT + + GE T+G V + + F VWD
Sbjct: 7 PQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDT 66
Query: 69 GGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQ 128
GQ K L Y+ + D + R N ++ E N +++ NK
Sbjct: 67 AGQEKFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE--NIPIVLCGNKV 124
Query: 129 DL 130
D+
Sbjct: 125 DI 126
>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex
pdb|1A2K|D Chain D, Gdpran-Ntf2 Complex
pdb|1A2K|E Chain E, Gdpran-Ntf2 Complex
pdb|1IBR|A Chain A, Complex Of Ran With Importin Beta
pdb|1IBR|C Chain C, Complex Of Ran With Importin Beta
pdb|1I2M|A Chain A, Ran-Rcc1-So4 Complex
pdb|1I2M|C Chain C, Ran-Rcc1-So4 Complex
pdb|1K5D|A Chain A, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|D Chain D, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|G Chain G, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|J Chain J, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|A Chain A, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|D Chain D, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|G Chain G, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|J Chain J, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|3CH5|A Chain A, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
pdb|3A6P|C Chain C, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|H Chain H, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|4GPT|A Chain A, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|A Chain A, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
pdb|4HAT|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|A Chain A, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
pdb|4HAY|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|A Chain A, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|A Chain A, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 216
Score = 39.7 bits (91), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 50/122 (40%), Gaps = 7/122 (5%)
Query: 14 PQCRIKLLMVGLDASGKTTILYKMKLGEIVTT-TPTIGFNVEAVEYKNK----SFCVWDV 68
PQ + KL++VG +GKTT + + GE T+G V + + F VWD
Sbjct: 7 PQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDT 66
Query: 69 GGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQ 128
GQ K L Y+ + D + R N ++ E N +++ NK
Sbjct: 67 AGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE--NIPIVLCGNKV 124
Query: 129 DL 130
D+
Sbjct: 125 DI 126
>pdb|1GOT|A Chain A, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
Length = 350
Score = 39.7 bits (91), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 10/93 (10%)
Query: 48 TIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERI---SEAR 104
T G +K+ +F +DVGGQ R W H F + F V SD + + E
Sbjct: 177 TTGIIETQFSFKDLNFRXFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEX 236
Query: 105 NELHQ-------ILSDNELSNAALLVFANKQDL 130
N H+ I ++ ++ ++++F NK+DL
Sbjct: 237 NRXHESXKLFDSICNNKWFTDTSIILFLNKKDL 269
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 39.7 bits (91), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/124 (22%), Positives = 56/124 (45%), Gaps = 6/124 (4%)
Query: 14 PQCRIKLLMVGLDASGKTTILYKMKLGEIVTT-TPTIGFNVEA----VEYKNKSFCVWDV 68
P + KL+ +G + GKT+++ + T TIG + + +E + +WD
Sbjct: 3 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDT 62
Query: 69 GGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQ 128
GQ + R+L Y RD+ V D ++ + + + ++ S+ +++ NK
Sbjct: 63 AGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERG-SDVIIMLVGNKT 121
Query: 129 DLPN 132
DL +
Sbjct: 122 DLAD 125
>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp
Length = 193
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 56/133 (42%), Gaps = 18/133 (13%)
Query: 18 IKLLMVGLDASGKTTILYKMKLGEIVTTT-PTIGFNVEAVEYKNKSFC---------VWD 67
K++++G GKT +L + E + TIG VE+ ++ +WD
Sbjct: 26 FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIG-----VEFSTRTVMLGTAAVKAQIWD 80
Query: 68 VGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANK 127
G + RA+ Y+R +G V D + + + L ++ E + +LV NK
Sbjct: 81 TAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLV-GNK 139
Query: 128 QDLPNV--MPTAE 138
DL +PT E
Sbjct: 140 SDLSQAREVPTEE 152
>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase
pdb|1Z0D|C Chain C, Gdp-bound Rab5c Gtpase
Length = 167
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 56/122 (45%), Gaps = 6/122 (4%)
Query: 16 CRIKLLMVGLDASGKTTILYKMKLG---EIVTTTPTIGFNVEAVEYKNKS--FCVWDVGG 70
C+ KL+++G A GK++++ + G E +T F + V + + F +WD G
Sbjct: 4 CQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAG 63
Query: 71 QNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDL 130
+ +L Y+R V D ++ + + A+N + + L N + + NK DL
Sbjct: 64 LERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKE-LQRQASPNIVIALAGNKADL 122
Query: 131 PN 132
+
Sbjct: 123 AS 124
>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
pdb|3TSO|B Chain B, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
Length = 178
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 56/133 (42%), Gaps = 18/133 (13%)
Query: 18 IKLLMVGLDASGKTTILYKMKLGEIVTTT-PTIGFNVEAVEYKNKSFC---------VWD 67
K++++G GKT +L + E + TIG VE+ ++ +WD
Sbjct: 11 FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIG-----VEFSTRTVMLGTAAVKAQIWD 65
Query: 68 VGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANK 127
G + RA+ Y+R +G V D + + + L ++ E + +LV NK
Sbjct: 66 TAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLV-GNK 124
Query: 128 QDLPNV--MPTAE 138
DL +PT E
Sbjct: 125 SDLSQAREVPTEE 137
>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 216
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 5/74 (6%)
Query: 14 PQCRIKLLMVGLDASGKTTILYKMKLGEIVTT-TPTIGFNVEAVEYKNK----SFCVWDV 68
PQ + KL++VG +GKTT + + GE T+G V + + F VWD
Sbjct: 7 PQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDT 66
Query: 69 GGQNKIRALWRHYF 82
GQ K L Y+
Sbjct: 67 AGQEKFGGLRDGYY 80
>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant
pdb|1QG4|B Chain B, Canine Gdp-Ran F72y Mutant
Length = 216
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 50/122 (40%), Gaps = 7/122 (5%)
Query: 14 PQCRIKLLMVGLDASGKTTILYKMKLGEIVTT-TPTIGFNVEAVEYKNK----SFCVWDV 68
PQ + KL++VG +GKTT + + GE T+G V + + F VWD
Sbjct: 7 PQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDT 66
Query: 69 GGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQ 128
GQ K L Y+ + D + R N ++ E N +++ NK
Sbjct: 67 AGQEKYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE--NIPIVLCGNKV 124
Query: 129 DL 130
D+
Sbjct: 125 DI 126
>pdb|1GIL|A Chain A, Structure Of Active Conformations Of Gia1 And The
Mechanism Of Gtp Hydrolysis
Length = 353
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 10/97 (10%)
Query: 44 TTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERI--- 100
T T G +K+ F ++DVGG R W H F + F V SD + +
Sbjct: 176 TRVKTTGIVETHFTFKDLHFKMFDVGGLRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 235
Query: 101 SEARNELHQ-------ILSDNELSNAALLVFANKQDL 130
E N +H+ I ++ ++ ++++F NK+DL
Sbjct: 236 DEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 272
Score = 27.3 bits (59), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 18/22 (81%)
Query: 18 IKLLMVGLDASGKTTILYKMKL 39
+KLL++G SGK+TI+ +MK+
Sbjct: 33 VKLLLLGAGESGKSTIVKQMKI 54
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 51/123 (41%), Gaps = 12/123 (9%)
Query: 18 IKLLMVGLDASGKTTILYKMKLGEI-----VTTTPTIGFNVEAVEYKNKSFCVWDVGGQN 72
K +++G GK+ +L + +T G + ++ K +WD GQ
Sbjct: 11 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQE 70
Query: 73 KIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSD---NELSNAALLVFANKQD 129
R++ R Y+R G V D + R+ N L L D + SN +++ NK D
Sbjct: 71 SFRSITRSYYRGAAGALLVYDITRRDTF----NHLTTWLEDARQHSNSNMVIMLIGNKSD 126
Query: 130 LPN 132
L +
Sbjct: 127 LES 129
>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ4|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ5|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ5|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ6|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf1 Complex
pdb|3GJ7|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ7|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ8|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
pdb|3GJ8|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
Length = 221
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 50/122 (40%), Gaps = 7/122 (5%)
Query: 14 PQCRIKLLMVGLDASGKTTILYKMKLGEIVTT-TPTIGFNVEAVEYKNK----SFCVWDV 68
PQ + KL++VG +GKTT + + GE T+G V + + F VWD
Sbjct: 12 PQVQFKLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFHTNRGPIKFNVWDT 71
Query: 69 GGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQ 128
GQ K L Y+ + D + R N ++ E N +++ NK
Sbjct: 72 AGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE--NIPIVLCGNKV 129
Query: 129 DL 130
D+
Sbjct: 130 DI 131
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
Length = 179
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/124 (22%), Positives = 56/124 (45%), Gaps = 6/124 (4%)
Query: 14 PQCRIKLLMVGLDASGKTTILYKMKLGEIVTT-TPTIGFNVEA----VEYKNKSFCVWDV 68
P + KL+ +G + GKT+++ + T TIG + + +E + +WD
Sbjct: 11 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 70
Query: 69 GGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQ 128
GQ + R+L Y RD+ V D ++ + + + ++ S+ +++ NK
Sbjct: 71 AGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERG-SDVIIMLVGNKT 129
Query: 129 DLPN 132
DL +
Sbjct: 130 DLSD 133
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 49/123 (39%), Gaps = 14/123 (11%)
Query: 19 KLLMVGLDASGKTTILYKMKLGEIVTT-TPTIGFNVEAVEYKNK--------SFCVWDVG 69
K++MVG GK+ + + E V PT +A Y+ K + D
Sbjct: 16 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-----KADSYRKKVVLDGEEVQIDILDTA 70
Query: 70 GQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQD 129
GQ A+ +YFR G V ++ E + + QIL E N L+ NK D
Sbjct: 71 GQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSD 130
Query: 130 LPN 132
L +
Sbjct: 131 LED 133
>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REF|A Chain A, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REG|A Chain A, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
pdb|3REG|B Chain B, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
Length = 194
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 46/84 (54%), Gaps = 8/84 (9%)
Query: 18 IKLLMVGLDASGKTTILYKMKLGEIVTT-TPTIGFNVEAV-EYKNKSFC--VWDVGGQ-- 71
+K+++VG A GKT +L GEI T PT+ N V +YKN+ F +WD GQ
Sbjct: 24 LKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEE 83
Query: 72 -NKIRALWRHYFRDTLGLTFVVDS 94
+++R L + D + L F V++
Sbjct: 84 YDRLRPL-SYADSDVVLLCFAVNN 106
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
Length = 168
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 49/123 (39%), Gaps = 14/123 (11%)
Query: 19 KLLMVGLDASGKTTILYKMKLGEIVTT-TPTIGFNVEAVEYKNK--------SFCVWDVG 69
K++MVG GK+ + + E V PT +A Y+ K + D
Sbjct: 6 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-----KADSYRKKVVLDGEEVQIDILDTA 60
Query: 70 GQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQD 129
GQ A+ +YFR G V ++ E + + QIL E N L+ NK D
Sbjct: 61 GQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSD 120
Query: 130 LPN 132
L +
Sbjct: 121 LED 123
>pdb|3T12|A Chain A, Mgla In Complex With Mglb In Transition State
pdb|3T1O|A Chain A, Mgla Bound To Gdp
pdb|3T1O|B Chain B, Mgla Bound To Gdp
pdb|3T1Q|A Chain A, Mgla Bound To Gppnhp In Complex With Mglb
Length = 198
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 59/116 (50%), Gaps = 8/116 (6%)
Query: 63 FCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSS-DRERI-SEARNELHQILSDNELS--N 118
F ++ V GQ A + R G+ FV DS+ +R R +E+ + + L++ L+ +
Sbjct: 76 FHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDD 135
Query: 119 AALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLS 174
+++ NK+DLP+ +P V ++ + ++ + A G+G++E L +S
Sbjct: 136 VPIVIQVNKRDLPDALPVEMVRAVVD----PEGKFPVLEAVATEGKGVFETLKEVS 187
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 49/123 (39%), Gaps = 14/123 (11%)
Query: 19 KLLMVGLDASGKTTILYKMKLGEIVTT-TPTIGFNVEAVEYKNK--------SFCVWDVG 69
K++MVG GK+ + + E V PT +A Y+ K + D
Sbjct: 20 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-----KADSYRKKVVLDGEEVQIDILDTA 74
Query: 70 GQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQD 129
GQ A+ +YFR G V ++ E + + QIL E N L+ NK D
Sbjct: 75 GQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSD 134
Query: 130 LPN 132
L +
Sbjct: 135 LED 137
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 49/123 (39%), Gaps = 14/123 (11%)
Query: 19 KLLMVGLDASGKTTILYKMKLGEIVTT-TPTIGFNVEAVEYKNK--------SFCVWDVG 69
K++MVG GK+ + + E V PT +A Y+ K + D
Sbjct: 8 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-----KADSYRKKVVLDGEEVQIDILDTA 62
Query: 70 GQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQD 129
GQ A+ +YFR G V ++ E + + QIL E N L+ NK D
Sbjct: 63 GQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSD 122
Query: 130 LPN 132
L +
Sbjct: 123 LED 125
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed
With Gdp
Length = 162
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 55/122 (45%), Gaps = 6/122 (4%)
Query: 17 RIKLLMVGLDASGKTTILYKMKLGEIVTT-TPTIGFN-VEAVEYKNKS---FCVWDVGGQ 71
+ KL+ +G A GKT+I+ + TIG + + Y ++ +WD GQ
Sbjct: 1 KYKLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQ 60
Query: 72 NKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLP 131
+ R+L Y RD+ V D ++R+ + IL++ + + + NK DL
Sbjct: 61 ERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERG-KDVIIALVGNKTDLG 119
Query: 132 NV 133
++
Sbjct: 120 DL 121
>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To
Ehrho1-Gtpgammas
Length = 188
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 46/84 (54%), Gaps = 8/84 (9%)
Query: 18 IKLLMVGLDASGKTTILYKMKLGEIVTT-TPTIGFNVEAV-EYKNKSFC--VWDVGGQ-- 71
+K+++VG A GKT +L GEI T PT+ N V +YKN+ F +WD GQ
Sbjct: 23 LKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEE 82
Query: 72 -NKIRALWRHYFRDTLGLTFVVDS 94
+++R L + D + L F V++
Sbjct: 83 YDRLRPL-SYADSDVVLLCFAVNN 105
>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State
Length = 207
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 53/122 (43%), Gaps = 13/122 (10%)
Query: 17 RIKLLMVGLDASGKTTILYKMKLGEIVTT-TPTIGFNVEA---VEYKNKSFCVWDVGGQN 72
R KL++VG A GKT +L E PT+ N A V+ K +WD GQ
Sbjct: 25 RKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQE 84
Query: 73 KIRALWRHYFRDT--LGLTFVVDSSDR-ERISEA-RNELHQILSDNELSNAALLVFANKQ 128
L + DT + + F VDS D E I E E+ N +++ ANK+
Sbjct: 85 DYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHF-----CPNVPIILVANKK 139
Query: 129 DL 130
DL
Sbjct: 140 DL 141
>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|D Chain D, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|F Chain F, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|H Chain H, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|2RGN|C Chain C, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|F Chain F, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 196
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 57/131 (43%), Gaps = 17/131 (12%)
Query: 12 FFPQCRIKLLMVGLDASGKTTILY---KMKLGEIVTTTPTIGFNVEA---VEYKNKSFCV 65
F R KL++VG A GKT +L K + E+ PT+ N A V+ K +
Sbjct: 3 FMAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVY--VPTVFENYVADIEVDGKQVELAL 60
Query: 66 WDVGGQNKIRALWRHYFRDT--LGLTFVVDSSDR-ERISEA-RNELHQILSDNELSNAAL 121
WD GQ L + DT + + F +DS D E I E E+ N +
Sbjct: 61 WDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-----CPNVPI 115
Query: 122 LVFANKQDLPN 132
++ NK+DL N
Sbjct: 116 ILVGNKKDLRN 126
>pdb|1TND|A Chain A, The 2.2 Angstroms Crystal Structure Of Transducin-Alpha
Complexed With Gtp Gamma S
pdb|1TND|B Chain B, The 2.2 Angstroms Crystal Structure Of Transducin-Alpha
Complexed With Gtp Gamma S
pdb|1TND|C Chain C, The 2.2 Angstroms Crystal Structure Of Transducin-Alpha
Complexed With Gtp Gamma S
pdb|1TAD|A Chain A, Gtpase Mechanism Of Gproteins From The 1.7-Angstrom
Crystal Structure Of Transducin Alpha-Gdp-Alf4-
pdb|1TAD|B Chain B, Gtpase Mechanism Of Gproteins From The 1.7-Angstrom
Crystal Structure Of Transducin Alpha-Gdp-Alf4-
pdb|1TAD|C Chain C, Gtpase Mechanism Of Gproteins From The 1.7-Angstrom
Crystal Structure Of Transducin Alpha-Gdp-Alf4-
pdb|1TAG|A Chain A, Structural Determinants For Activation Of The
Alpha-Subunit Of A Heterotrimeric G Protein
Length = 324
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 43/93 (46%), Gaps = 10/93 (10%)
Query: 48 TIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFV----------VDSSDR 97
T G +K+ +F ++DVGGQ R W H F + F+ V+ +
Sbjct: 151 TTGIIETQFSFKDLNFRMFDVGGQRSERKKWIHCFEGVTCIIFIAALSAYDMVLVEDDEV 210
Query: 98 ERISEARNELHQILSDNELSNAALLVFANKQDL 130
R+ E+ + + I + + ++++F NK+D+
Sbjct: 211 NRMHESLHLFNSICNHRYFATTSIVLFLNKKDV 243
Score = 26.9 bits (58), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 18/22 (81%)
Query: 18 IKLLMVGLDASGKTTILYKMKL 39
+KLL++G SGK+TI+ +MK+
Sbjct: 4 VKLLLLGAGESGKSTIVKQMKI 25
>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex
Length = 182
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 49/122 (40%), Gaps = 7/122 (5%)
Query: 14 PQCRIKLLMVGLDASGKTTILYKMKLGEIVTT-TPTIGFNVEAVEYKNK----SFCVWDV 68
PQ + KL++VG +GKTT + + GE T+G V + + F VWD
Sbjct: 9 PQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDT 68
Query: 69 GGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQ 128
G K L Y+ + D + R N ++ E N +++ NK
Sbjct: 69 AGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE--NIPIVLCGNKV 126
Query: 129 DL 130
D+
Sbjct: 127 DI 128
>pdb|3T1T|A Chain A, Mgla Bound To Gdp In P1 Tetrameric Arrangement
pdb|3T1T|B Chain B, Mgla Bound To Gdp In P1 Tetrameric Arrangement
pdb|3T1T|C Chain C, Mgla Bound To Gdp In P1 Tetrameric Arrangement
pdb|3T1T|D Chain D, Mgla Bound To Gdp In P1 Tetrameric Arrangement
pdb|3T1V|A Chain A, Mgla Bound To Gdp In P2(1) Tetrameric Arrangement
pdb|3T1V|B Chain B, Mgla Bound To Gdp In P2(1) Tetrameric Arrangement
pdb|3T1V|C Chain C, Mgla Bound To Gdp In P2(1) Tetrameric Arrangement
pdb|3T1V|D Chain D, Mgla Bound To Gdp In P2(1) Tetrameric Arrangement
Length = 198
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 8/116 (6%)
Query: 63 FCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSD---RERISEARNELHQILSDN-ELSN 118
F ++ V GQ A + R G+ FV DS+ R RN + L +
Sbjct: 76 FHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESXRNXRENLAEYGLTLDD 135
Query: 119 AALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLS 174
+++ NK+DLP+ +P V ++ + ++ + A G+G++E L +S
Sbjct: 136 VPIVIQVNKRDLPDALPVEXVRAVVD----PEGKFPVLEAVATEGKGVFETLKEVS 187
>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|F Chain F, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NBZ|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NC0|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC0|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
Length = 176
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 49/122 (40%), Gaps = 7/122 (5%)
Query: 14 PQCRIKLLMVGLDASGKTTILYKMKLGEIVTT-TPTIGFNVEAVEYKNK----SFCVWDV 68
PQ + KL++VG +GKTT + + GE T+G V + + F VWD
Sbjct: 3 PQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDT 62
Query: 69 GGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQ 128
G K L Y+ + D + R N ++ E N +++ NK
Sbjct: 63 AGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE--NIPIVLCGNKV 120
Query: 129 DL 130
D+
Sbjct: 121 DI 122
>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|C Chain C, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|D Chain D, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LWN|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LWN|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LXR|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa And Gdp (Complex
C)
Length = 185
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 56/126 (44%), Gaps = 17/126 (13%)
Query: 17 RIKLLMVGLDASGKTTILY---KMKLGEIVTTTPTIGFNVEA---VEYKNKSFCVWDVGG 70
R KL++VG A GKT +L K + E+ PT+ N A V+ K +WD G
Sbjct: 9 RKKLVIVGDGACGKTCLLIVFSKDQFPEVY--VPTVFENYVADIEVDGKQVELALWDTAG 66
Query: 71 QNKIRALWRHYFRDT--LGLTFVVDSSDR-ERISEA-RNELHQILSDNELSNAALLVFAN 126
Q L + DT + + F +DS D E I E E+ N +++ N
Sbjct: 67 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-----CPNVPIILVGN 121
Query: 127 KQDLPN 132
K+DL N
Sbjct: 122 KKDLRN 127
>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|1XCG|F Chain F, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|3T06|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
pdb|3T06|F Chain F, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
Length = 178
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 56/126 (44%), Gaps = 17/126 (13%)
Query: 17 RIKLLMVGLDASGKTTILY---KMKLGEIVTTTPTIGFNVEA---VEYKNKSFCVWDVGG 70
R KL++VG A GKT +L K + E+ PT+ N A V+ K +WD G
Sbjct: 3 RKKLVIVGDGACGKTCLLIVNSKDQFPEVY--VPTVFENYVADIEVDGKQVELALWDTAG 60
Query: 71 QNKIRALWRHYFRDT--LGLTFVVDSSDR-ERISEA-RNELHQILSDNELSNAALLVFAN 126
Q L + DT + + F +DS D E I E E+ N +++ N
Sbjct: 61 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-----CPNVPIILVGN 115
Query: 127 KQDLPN 132
K+DL N
Sbjct: 116 KKDLRN 121
>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|C Chain C, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 204
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 49/121 (40%), Gaps = 7/121 (5%)
Query: 15 QCRIKLLMVGLDASGKTTILYKMKLGEIVTT-TPTIGFNVEAVEYKNK----SFCVWDVG 69
Q + KL++VG +GKTT + + GE T+G V + + F VWD
Sbjct: 1 QVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTA 60
Query: 70 GQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQD 129
GQ K L Y+ + D + R N ++ E N +++ NK D
Sbjct: 61 GQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE--NIPIVLCGNKVD 118
Query: 130 L 130
+
Sbjct: 119 I 119
>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap
Domain Of Arhgap20
Length = 180
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 56/126 (44%), Gaps = 17/126 (13%)
Query: 17 RIKLLMVGLDASGKTTILY---KMKLGEIVTTTPTIGFNVEA---VEYKNKSFCVWDVGG 70
R KL++VG A GKT +L K + E+ PT+ N A V+ K +WD G
Sbjct: 5 RKKLVIVGDGACGKTCLLIVNSKDQFPEVY--VPTVFENYVADIEVDGKQVELALWDTAG 62
Query: 71 QNKIRALWRHYFRDT--LGLTFVVDSSDR-ERISEA-RNELHQILSDNELSNAALLVFAN 126
Q L + DT + + F +DS D E I E E+ N +++ N
Sbjct: 63 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-----CPNVPIILVGN 117
Query: 127 KQDLPN 132
K+DL N
Sbjct: 118 KKDLRN 123
>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase
Length = 179
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 58/135 (42%), Gaps = 16/135 (11%)
Query: 18 IKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNK---------SFCVWDV 68
K++++G GK++++ + + + F+ VE+ NK + +WD
Sbjct: 12 FKIILLGDGGVGKSSLMNRY----VTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDT 67
Query: 69 GGQNKIRALWRHYFR--DTLGLTFVVDSSDR-ERISEARNELHQILSDNELSNAALLVFA 125
GQ + R+L ++R D LTF VD S + +S + E E + ++
Sbjct: 68 AGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILG 127
Query: 126 NKQDLPNVMPTAEVA 140
NK D+ + E A
Sbjct: 128 NKTDIKERQVSTEEA 142
>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
pdb|1CC0|C Chain C, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
Length = 190
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 56/126 (44%), Gaps = 17/126 (13%)
Query: 17 RIKLLMVGLDASGKTTILY---KMKLGEIVTTTPTIGFNVEA---VEYKNKSFCVWDVGG 70
R KL++VG A GKT +L K + E+ PT+ N A V+ K +WD G
Sbjct: 5 RKKLVIVGDGACGKTCLLIVNSKDQFPEVY--VPTVFENYVADIEVDGKQVELALWDTAG 62
Query: 71 QNKIRALWRHYFRDT--LGLTFVVDSSDR-ERISEA-RNELHQILSDNELSNAALLVFAN 126
Q L + DT + + F +DS D E I E E+ N +++ N
Sbjct: 63 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-----CPNVPIILVGN 117
Query: 127 KQDLPN 132
K+DL N
Sbjct: 118 KKDLRN 123
>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
pdb|1S1C|B Chain B, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
Length = 183
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 56/126 (44%), Gaps = 17/126 (13%)
Query: 17 RIKLLMVGLDASGKTTILY---KMKLGEIVTTTPTIGFNVEA---VEYKNKSFCVWDVGG 70
R KL++VG A GKT +L K + E+ PT+ N A V+ K +WD G
Sbjct: 7 RKKLVIVGDGACGKTCLLIVFSKDQFPEVY--VPTVFENYVADIEVDGKQVELALWDTAG 64
Query: 71 QNKIRALWRHYFRDT--LGLTFVVDSSDR-ERISEA-RNELHQILSDNELSNAALLVFAN 126
Q L + DT + + F +DS D E I E E+ N +++ N
Sbjct: 65 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-----CPNVPIILVGN 119
Query: 127 KQDLPN 132
K+DL N
Sbjct: 120 KKDLRN 125
>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex
pdb|3TVD|B Chain B, Crystal Structure Of Mouse Rhoa-Gtp Complex
Length = 193
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 56/126 (44%), Gaps = 17/126 (13%)
Query: 17 RIKLLMVGLDASGKTTILY---KMKLGEIVTTTPTIGFNVEA---VEYKNKSFCVWDVGG 70
R KL++VG A GKT +L K + E+ PT+ N A V+ K +WD G
Sbjct: 5 RKKLVIVGDGACGKTCLLIVFSKDQFPEVY--VPTVFENYVADIEVDGKQVELALWDTAG 62
Query: 71 QNKIRALWRHYFRDT--LGLTFVVDSSDR-ERISEA-RNELHQILSDNELSNAALLVFAN 126
Q L + DT + + F +DS D E I E E+ N +++ N
Sbjct: 63 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-----CPNVPIILVGN 117
Query: 127 KQDLPN 132
K+DL N
Sbjct: 118 KKDLRN 123
>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap
pdb|1FTN|A Chain A, Crystal Structure Of The Human RhoaGDP COMPLEX
Length = 193
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 56/126 (44%), Gaps = 17/126 (13%)
Query: 17 RIKLLMVGLDASGKTTILY---KMKLGEIVTTTPTIGFNVEA---VEYKNKSFCVWDVGG 70
R KL++VG A GKT +L K + E+ PT+ N A V+ K +WD G
Sbjct: 5 RKKLVIVGDGACGKTCLLIVNSKDQFPEVY--VPTVFENYVADIEVDGKQVELALWDTAG 62
Query: 71 QNKIRALWRHYFRDT--LGLTFVVDSSDR-ERISEA-RNELHQILSDNELSNAALLVFAN 126
Q L + DT + + F +DS D E I E E+ N +++ N
Sbjct: 63 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-----CPNVPIILVGN 117
Query: 127 KQDLPN 132
K+DL N
Sbjct: 118 KKDLRN 123
>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
pdb|3KZ1|F Chain F, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
Length = 182
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 56/126 (44%), Gaps = 17/126 (13%)
Query: 17 RIKLLMVGLDASGKTTILY---KMKLGEIVTTTPTIGFNVEA---VEYKNKSFCVWDVGG 70
R KL++VG A GKT +L K + E+ PT+ N A V+ K +WD G
Sbjct: 6 RKKLVIVGDGACGKTCLLIVFSKDQFPEVY--VPTVFENYVADIEVDGKQVELALWDTAG 63
Query: 71 QNKIRALWRHYFRDT--LGLTFVVDSSDR-ERISEA-RNELHQILSDNELSNAALLVFAN 126
Q L + DT + + F +DS D E I E E+ N +++ N
Sbjct: 64 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-----CPNVPIILVGN 118
Query: 127 KQDLPN 132
K+DL N
Sbjct: 119 KKDLRN 124
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/121 (22%), Positives = 55/121 (45%), Gaps = 6/121 (4%)
Query: 17 RIKLLMVGLDASGKTTILYKMKLGEIVTT-TPTIGFNVEA----VEYKNKSFCVWDVGGQ 71
+ KL+ +G + GKT+++ + T TIG + + +E + +WD GQ
Sbjct: 2 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 61
Query: 72 NKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLP 131
+ R+L Y RD+ V D ++ + + + ++ S+ +++ NK DL
Sbjct: 62 ERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERG-SDVIIMLVGNKTDLA 120
Query: 132 N 132
+
Sbjct: 121 D 121
>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
pdb|1S8F|B Chain B, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
Length = 177
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 58/135 (42%), Gaps = 16/135 (11%)
Query: 18 IKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNK---------SFCVWDV 68
K++++G GK++++ + + T F+ VE+ NK + +WD
Sbjct: 10 FKVILLGDGGVGKSSLMNRY----VTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDT 65
Query: 69 GGQNKIRALWRHYFR--DTLGLTFVVDSSDR-ERISEARNELHQILSDNELSNAALLVFA 125
GQ + R+L ++R D LTF VD S + +S + E E + ++
Sbjct: 66 AGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILG 125
Query: 126 NKQDLPNVMPTAEVA 140
NK D+ + E A
Sbjct: 126 NKIDISERQVSTEEA 140
>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX
Length = 177
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 56/126 (44%), Gaps = 17/126 (13%)
Query: 17 RIKLLMVGLDASGKTTILY---KMKLGEIVTTTPTIGFNVEA---VEYKNKSFCVWDVGG 70
R KL++VG A GKT +L K + E+ PT+ N A V+ K +WD G
Sbjct: 3 RKKLVIVGDGACGKTCLLIVNSKDQFPEVY--VPTVFENYVADIEVDGKQVELALWDTAG 60
Query: 71 QNKIRALWRHYFRDT--LGLTFVVDSSDR-ERISEA-RNELHQILSDNELSNAALLVFAN 126
Q L + DT + + F +DS D E I E E+ N +++ N
Sbjct: 61 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-----CPNVPIILVGN 115
Query: 127 KQDLPN 132
K+DL N
Sbjct: 116 KKDLRN 121
>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
pdb|1WMS|B Chain B, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
Length = 177
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 58/135 (42%), Gaps = 16/135 (11%)
Query: 18 IKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNK---------SFCVWDV 68
K++++G GK++++ + + T F+ VE+ NK + +WD
Sbjct: 8 FKVILLGDGGVGKSSLMNRY----VTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDT 63
Query: 69 GGQNKIRALWRHYFR--DTLGLTFVVDSSDR-ERISEARNELHQILSDNELSNAALLVFA 125
GQ + R+L ++R D LTF VD S + +S + E E + ++
Sbjct: 64 AGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILG 123
Query: 126 NKQDLPNVMPTAEVA 140
NK D+ + E A
Sbjct: 124 NKIDISERQVSTEEA 138
>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|D Chain D, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|F Chain F, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|H Chain H, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
Length = 192
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 56/126 (44%), Gaps = 17/126 (13%)
Query: 17 RIKLLMVGLDASGKTTILY---KMKLGEIVTTTPTIGFNVEA---VEYKNKSFCVWDVGG 70
R KL++VG A GKT +L K + E+ PT+ N A V+ K +WD G
Sbjct: 7 RKKLVIVGDGACGKTCLLIVFSKDQFPEVY--VPTVFENYVADIEVDGKQVELALWDTAG 64
Query: 71 QNKIRALWRHYFRDT--LGLTFVVDSSDR-ERISEA-RNELHQILSDNELSNAALLVFAN 126
Q L + DT + + F +DS D E I E E+ N +++ N
Sbjct: 65 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-----CPNVPIILVGN 119
Query: 127 KQDLPN 132
K+DL N
Sbjct: 120 KKDLRN 125
>pdb|4FID|A Chain A, Crystal Structure Of A Heterotrimeric G-Protein Subunit
From Entamoeba Histolytica, Ehg-Alpha-1
pdb|4FID|B Chain B, Crystal Structure Of A Heterotrimeric G-Protein Subunit
From Entamoeba Histolytica, Ehg-Alpha-1
Length = 340
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 39/95 (41%), Gaps = 10/95 (10%)
Query: 46 TPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVV----------DSS 95
T T G + K+ F + DVGGQ R W +F D FV +
Sbjct: 146 TKTTGIHEYDFVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDXKLYEDG 205
Query: 96 DRERISEARNELHQILSDNELSNAALLVFANKQDL 130
+ R++E+ I ++ L A L+F NK DL
Sbjct: 206 NTSRLTESIAVFKDIXTNEFLKGAVKLIFLNKXDL 240
>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|C Chain C, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|D Chain D, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|B Chain B, Canine Gdp-Ran Q69l Mutant
pdb|3GJX|C Chain C, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|F Chain F, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
Length = 216
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 49/122 (40%), Gaps = 7/122 (5%)
Query: 14 PQCRIKLLMVGLDASGKTTILYKMKLGEIVTT-TPTIGFNVEAVEYKNK----SFCVWDV 68
PQ + KL++VG +GKTT + + GE T+G V + + F VWD
Sbjct: 7 PQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDT 66
Query: 69 GGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQ 128
G K L Y+ + D + R N ++ E N +++ NK
Sbjct: 67 AGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE--NIPIVLCGNKV 124
Query: 129 DL 130
D+
Sbjct: 125 DI 126
>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex
With Rhogdi In Its Active Gppnhp-Bound Form
Length = 195
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 56/126 (44%), Gaps = 17/126 (13%)
Query: 17 RIKLLMVGLDASGKTTILY---KMKLGEIVTTTPTIGFNVEA---VEYKNKSFCVWDVGG 70
R KL++VG A GKT +L K + E+ PT+ N A V+ K +WD G
Sbjct: 7 RKKLVIVGDGACGKTCLLIVFSKDQFPEVY--VPTVFENYVADIEVDGKQVELALWDTAG 64
Query: 71 QNKIRALWRHYFRDT--LGLTFVVDSSDR-ERISEA-RNELHQILSDNELSNAALLVFAN 126
Q L + DT + + F +DS D E I E E+ N +++ N
Sbjct: 65 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-----CPNVPIILVGN 119
Query: 127 KQDLPN 132
K+DL N
Sbjct: 120 KKDLRN 125
>pdb|1ZCA|A Chain A, Crystal Structure Of G Alpha 12 In Complex With Gdp, Mg2+
And Alf4-
pdb|1ZCA|B Chain B, Crystal Structure Of G Alpha 12 In Complex With Gdp, Mg2+
And Alf4-
Length = 359
Score = 36.6 bits (83), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 51/123 (41%), Gaps = 11/123 (8%)
Query: 18 IKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRAL 77
+K + LD G+ + K ++ T G K F + DVGGQ R
Sbjct: 157 VKYFLDNLDRIGQLN-YFPSKQDILLARKATKGIVEHDFVIKKIPFKMVDVGGQRSQRQK 215
Query: 78 WRHYFRDTLGLTFVVDSSDRE----------RISEARNELHQILSDNELSNAALLVFANK 127
W F + F+V SS+ + R+ E+ N I+++ N ++++F NK
Sbjct: 216 WFQCFDGITSILFMVSSSEYDQVLMEDRRTNRLVESMNIFETIVNNKLFFNVSIILFLNK 275
Query: 128 QDL 130
DL
Sbjct: 276 MDL 278
>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
Length = 162
Score = 36.6 bits (83), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/121 (22%), Positives = 55/121 (45%), Gaps = 6/121 (4%)
Query: 17 RIKLLMVGLDASGKTTILYKMKLGEIVTT-TPTIGFNVEA----VEYKNKSFCVWDVGGQ 71
+ KL+ +G + GKT+++ + T TIG + + +E + +WD GQ
Sbjct: 1 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 60
Query: 72 NKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLP 131
+ R+L Y RD+ V D ++ + + + ++ S+ +++ NK DL
Sbjct: 61 ERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERG-SDVIIMLVGNKTDLA 119
Query: 132 N 132
+
Sbjct: 120 D 120
>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l)
pdb|4DKX|B Chain B, Crystal Structure Of The Rab 6a'(Q72l)
Length = 216
Score = 36.2 bits (82), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/124 (21%), Positives = 55/124 (44%), Gaps = 6/124 (4%)
Query: 14 PQCRIKLLMVGLDASGKTTILYKMKLGEIVTT-TPTIGFNVEA----VEYKNKSFCVWDV 68
P + KL+ +G + GKT+++ + T TIG + + +E + +WD
Sbjct: 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDT 69
Query: 69 GGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQ 128
G + R+L Y RD+ V D ++ + + + ++ S+ +++ NK
Sbjct: 70 AGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERG-SDVIIMLVGNKT 128
Query: 129 DLPN 132
DL +
Sbjct: 129 DLAD 132
>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
pdb|1Z2C|C Chain C, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
Length = 193
Score = 35.8 bits (81), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 55/124 (44%), Gaps = 17/124 (13%)
Query: 17 RIKLLMVGLDASGKTTILY---KMKLGEIVTTTPTIGFNVEA---VEYKNKSFCVWDVGG 70
R KL++VG A GKT +L K + E+ PT+ N A V+ K +WD G
Sbjct: 5 RKKLVIVGDGACGKTCLLIVNSKDQFPEVY--VPTVFENYIADIEVDGKQVELALWDTAG 62
Query: 71 QNKIRALWRHYFRDT--LGLTFVVDSSDR-ERISEA-RNELHQILSDNELSNAALLVFAN 126
Q L + DT + + F +DS D E I E E+ N +++ N
Sbjct: 63 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-----CPNVPIILVGN 117
Query: 127 KQDL 130
K+DL
Sbjct: 118 KKDL 121
>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex
pdb|2GCO|B Chain B, Crystal Structure Of The Human Rhoc-gppnhp Complex
pdb|2GCP|A Chain A, Crystal Structure Of The Human Rhoc-Gsp Complex
Length = 201
Score = 35.8 bits (81), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 55/124 (44%), Gaps = 17/124 (13%)
Query: 17 RIKLLMVGLDASGKTTILY---KMKLGEIVTTTPTIGFNVEA---VEYKNKSFCVWDVGG 70
R KL++VG A GKT +L K + E+ PT+ N A V+ K +WD G
Sbjct: 25 RKKLVIVGDGACGKTCLLIVFSKDQFPEVY--VPTVFENYIADIEVDGKQVELALWDTAG 82
Query: 71 QNKIRALWRHYFRDT--LGLTFVVDSSDR-ERISEA-RNELHQILSDNELSNAALLVFAN 126
Q L + DT + + F +DS D E I E E+ N +++ N
Sbjct: 83 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-----CPNVPIILVGN 137
Query: 127 KQDL 130
K+DL
Sbjct: 138 KKDL 141
>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group
pdb|1Z2A|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In P2(1)2(1)2(1) Space
Group
Length = 168
Score = 35.4 bits (80), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 56/119 (47%), Gaps = 9/119 (7%)
Query: 18 IKLLMVGLDASGKTTILYKMKLGEIVTT--TPTIGFNVEA----VEYKNKSFCVWDVGGQ 71
IK+++VG A GK++++ + G I T TIG + V ++ +WD GQ
Sbjct: 6 IKMVVVGNGAVGKSSMIQRYCKG-IFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQ 64
Query: 72 NKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDL 130
+ A+ + Y+R V ++DRE + ++++ E+ + + NK DL
Sbjct: 65 EEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVA--EVGDIPTALVQNKIDL 121
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 35.4 bits (80), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 34/151 (22%), Positives = 66/151 (43%), Gaps = 24/151 (15%)
Query: 18 IKLLMVGLDASGKTTILYKMKLGEIVT---TTPTIGFNVEAVEYKNKS--FCVWDVGGQN 72
K++++G GKT ++ + G T + F ++ VE + +WD GQ
Sbjct: 27 FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQE 86
Query: 73 KIRALWRHYFR--DTLGLTFVVDSSD---------RERISEARNELHQILSDN------- 114
+ R++ + Y+R + L LT+ + + RE A N++ +L N
Sbjct: 87 RFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAER 146
Query: 115 -ELSNAALLVFANKQDLPNVMPTAEVADKLE 144
E+S F+ QD+ + +A+ +D +E
Sbjct: 147 REVSQQRAEEFSEAQDMYYLETSAKESDNVE 177
>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex
Length = 201
Score = 35.4 bits (80), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 55/124 (44%), Gaps = 17/124 (13%)
Query: 17 RIKLLMVGLDASGKTTILY---KMKLGEIVTTTPTIGFNVEA---VEYKNKSFCVWDVGG 70
R KL++VG A GKT +L K + E+ PT+ N A V+ K +WD G
Sbjct: 25 RKKLVIVGDGACGKTCLLIVFSKDQFPEVY--VPTVFENYIADIEVDGKQVELALWDTAG 82
Query: 71 QNKIRALWRHYFRDT--LGLTFVVDSSDR-ERISEA-RNELHQILSDNELSNAALLVFAN 126
Q L + DT + + F +DS D E I E E+ N +++ N
Sbjct: 83 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-----XPNVPIILVGN 137
Query: 127 KQDL 130
K+DL
Sbjct: 138 KKDL 141
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 35.4 bits (80), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 51/117 (43%), Gaps = 6/117 (5%)
Query: 19 KLLMVGLDASGKTTILYKMKLGEIVT-TTPTIGF----NVEAVEYKNKSFCVWDVGGQNK 73
KL+++G +GK++++ + + V TIG AV F +WD GQ +
Sbjct: 14 KLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 73
Query: 74 IRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDL 130
+L Y+R V D +++ A+ + ++ + N + + NK DL
Sbjct: 74 YHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGN-PNMVMALAGNKSDL 129
>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 188
Score = 35.0 bits (79), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 27/124 (21%), Positives = 55/124 (44%), Gaps = 6/124 (4%)
Query: 14 PQCRIKLLMVGLDASGKTTILYKMKLGEIVTT-TPTIGFNVEA----VEYKNKSFCVWDV 68
P + KL+ +G + GKT+++ + T TIG + + +E + +WD
Sbjct: 3 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 62
Query: 69 GGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQ 128
G + R+L Y RD+ V D ++ + + + ++ S+ +++ NK
Sbjct: 63 AGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERG-SDVIIMLVGNKT 121
Query: 129 DLPN 132
DL +
Sbjct: 122 DLAD 125
>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|B Chain B, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|C Chain C, Rab6-Gtp:gcc185 Rab Binding Domain Complex
Length = 211
Score = 35.0 bits (79), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 27/124 (21%), Positives = 55/124 (44%), Gaps = 6/124 (4%)
Query: 14 PQCRIKLLMVGLDASGKTTILYKMKLGEIVTT-TPTIGFNVEA----VEYKNKSFCVWDV 68
P + KL+ +G + GKT+++ + T TIG + + +E + +WD
Sbjct: 13 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 72
Query: 69 GGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQ 128
G + R+L Y RD+ V D ++ + + + ++ S+ +++ NK
Sbjct: 73 AGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERG-SDVIIMLVGNKT 131
Query: 129 DLPN 132
DL +
Sbjct: 132 DLAD 135
>pdb|1K6M|A Chain A, Crystal Structure Of Human Liver
6-Phosphofructo-2-KinaseFRUCTOSE-2, 6-Bisphosphatase
pdb|1K6M|B Chain B, Crystal Structure Of Human Liver
6-Phosphofructo-2-KinaseFRUCTOSE-2, 6-Bisphosphatase
Length = 432
Score = 34.7 bits (78), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Query: 20 LLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNV-----EAVEYKNKSFCVWD 67
++MVGL A GKT I K+ TPT FN+ EAV YKN F + D
Sbjct: 6 VIMVGLPARGKTYISTKLTRYLNFIGTPTKVFNLGQYRREAVSYKNYEFFLPD 58
>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC3|C Chain C, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|A Chain A, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|C Chain C, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
Length = 175
Score = 34.7 bits (78), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 48/123 (39%), Gaps = 14/123 (11%)
Query: 19 KLLMVGLDASGKTTILYKMKLGEIVTT-TPTIGFNVEAVEYKNK--------SFCVWDVG 69
K++MVG GK+ + + E V PT +A Y+ K + D
Sbjct: 8 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-----KADSYRKKVVLDGEEVQIDILDTA 62
Query: 70 GQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQD 129
G A+ +YFR G V ++ E + + QIL E N L+ NK D
Sbjct: 63 GLEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSD 122
Query: 130 LPN 132
L +
Sbjct: 123 LED 125
>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa
Mutant (Q63l)
Length = 184
Score = 33.9 bits (76), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 58/127 (45%), Gaps = 19/127 (14%)
Query: 17 RIKLLMVGLDASGKTTILY---KMKLGEIVTTTPTIGFNVEA---VEYKNKSFCVWDVGG 70
R KL++VG A GKT +L K + E+ PT+ N A V+ K +WD G
Sbjct: 8 RKKLVIVGDGACGKTCLLIVNSKDQFPEVY--VPTVFENYVADIEVDGKQVELALWDTAG 65
Query: 71 ---QNKIRALWRHYFRDTLGLTFVVDSSDR-ERISEA-RNELHQILSDNELSNAALLVFA 125
+++R L + D + + F +DS D E I E E+ N +++
Sbjct: 66 LEDYDRLRPL-SYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-----CPNVPIILVG 119
Query: 126 NKQDLPN 132
NK+DL N
Sbjct: 120 NKKDLRN 126
>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 33.9 bits (76), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 50/118 (42%), Gaps = 4/118 (3%)
Query: 19 KLLMVGLDASGKTTILYKMKLGEIVTT-TPTIGFNVEAVEYKNKSFCVWDV---GGQNKI 74
KL++VG D GK+ + ++ V PTI + + C+ D+ GQ +
Sbjct: 6 KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 65
Query: 75 RALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPN 132
A+ Y R G V ++ + + + QI + + +++ NK DLP+
Sbjct: 66 SAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLPS 123
>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DST|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSU|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSN|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
Length = 189
Score = 33.5 bits (75), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 50/118 (42%), Gaps = 4/118 (3%)
Query: 19 KLLMVGLDASGKTTILYKMKLGEIVTT-TPTIGFNVEAVEYKNKSFCVWDV---GGQNKI 74
KL++VG D GK+ + ++ V PTI + + C+ D+ GQ +
Sbjct: 6 KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 65
Query: 75 RALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPN 132
A+ Y R G V ++ + + + QI + + +++ NK DLP+
Sbjct: 66 SAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS 123
>pdb|3LLU|A Chain A, Crystal Structure Of The Nucleotide-Binding Domain Of Ras-
Related Gtp-Binding Protein C
Length = 196
Score = 33.1 bits (74), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 50/111 (45%), Gaps = 14/111 (12%)
Query: 12 FFPQCRIKLLMVGLDASGKTTI----LYKMKLGEIV---TTTPTIGFNVEAVEYKNKSFC 64
+F + ++L++GL SGK++I +KM E + +T ++ + N F
Sbjct: 15 YFQGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVN--FQ 72
Query: 65 VWDVGGQNKIRALWRHY---FRDTLGLTFVVDSSDRERISEARNELHQILS 112
+WD GQ Y FR T L +V+D+ D EA LH +S
Sbjct: 73 IWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQD--DYMEALTRLHITVS 121
>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp
Analogue
Length = 180
Score = 33.1 bits (74), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 29/135 (21%), Positives = 57/135 (42%), Gaps = 16/135 (11%)
Query: 18 IKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNK---------SFCVWDV 68
+K++++G GK++++ + + + F+ VE+ N+ + +WD
Sbjct: 8 LKVILLGDGGVGKSSLMNRY----VTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDT 63
Query: 69 GGQNKIRALWRHYFR--DTLGLTFVVDSSDR-ERISEARNELHQILSDNELSNAALLVFA 125
GQ + ++L ++R D LTF VD E + + E + + +V
Sbjct: 64 AGQERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVVLG 123
Query: 126 NKQDLPNVMPTAEVA 140
NK D + T E A
Sbjct: 124 NKVDKEDRQVTTEEA 138
>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex
Length = 178
Score = 33.1 bits (74), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 54/150 (36%), Gaps = 24/150 (16%)
Query: 19 KLLMVGLDASGKTTILYKMKLGEIVTT-TPTIGFNVEAVEYKNK--------SFCVWDVG 69
K++MVG GK+ + + E V PT +A Y+ K + D
Sbjct: 9 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-----KADSYRKKVVLDGEEVQIDILDTA 63
Query: 70 GQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILS-DNELSNAALLVFANKQ 128
G A+ +YFR G V ++ E + QIL E LLV NK
Sbjct: 64 GLEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKS 123
Query: 129 DLPN--VMPTAEVADKLELYSLGQRRWSIQ 156
DL +P E K E W +Q
Sbjct: 124 DLEERRQVPVEEARSKAE-------EWGVQ 146
>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
pdb|2ZEJ|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 184
Score = 32.7 bits (73), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 10/75 (13%)
Query: 17 RIKLLMVGLDASGKTTI---LYKMKLGEIVTTTPTIGFNVE--AVEYKNKS-----FCVW 66
R KL +VG SGKTT+ L K K ++ + T+G +V+ ++ ++K VW
Sbjct: 2 RXKLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVW 61
Query: 67 DVGGQNKIRALWRHY 81
D G+ + + H+
Sbjct: 62 DFAGREEFYSTHPHF 76
>pdb|2RN7|A Chain A, Nmr Solution Structure Of Tnpe Protein From Shigella
Flexneri. Northeast Structural Genomics Target Sfr125
Length = 108
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 48/118 (40%), Gaps = 22/118 (18%)
Query: 11 RFFPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGG 70
RF P+ R + + + L++ G+ Y + I + P IG E
Sbjct: 6 RFSPEVRQRAVRMVLESQGE----YDSQWATICSIAPKIGCTPET--------------- 46
Query: 71 QNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQ 128
+R R + RDT G + +++R+R+ E E ++ N++ A FA +
Sbjct: 47 ---LRVWVRQHERDTGGDDGGLTTAERQRLKEPERENRELRRSNDILRLASAYFAKAE 101
>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb
In Its Active Conformation: Significance For Effector
Protein Binding
Length = 174
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 54/150 (36%), Gaps = 24/150 (16%)
Query: 19 KLLMVGLDASGKTTILYKMKLGEIVTT-TPTIGFNVEAVEYKNK--------SFCVWDVG 69
K++MVG GK+ + + E V PT +A Y+ K + D
Sbjct: 5 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-----KADSYRKKVVLDGEEVQIDILDTA 59
Query: 70 GQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILS-DNELSNAALLVFANKQ 128
G A+ +YFR G V ++ E + QIL E LLV NK
Sbjct: 60 GLEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKS 119
Query: 129 DLPN--VMPTAEVADKLELYSLGQRRWSIQ 156
DL +P E K E W +Q
Sbjct: 120 DLEERRQVPVEEARSKAE-------EWGVQ 142
>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex
Length = 172
Score = 32.3 bits (72), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 47/118 (39%), Gaps = 7/118 (5%)
Query: 18 IKLLMVGLDASGKTTILYKMKLGEIVTT-TPTIGFNVEAVEYKNK----SFCVWDVGGQN 72
KL++VG +GKTT + + GE TIG V + + F VWD G
Sbjct: 6 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 65
Query: 73 KIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDL 130
K L Y+ + + D + R N ++ E N +++ NK D+
Sbjct: 66 KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCE--NIPIVLCGNKVDV 121
>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 219
Score = 32.3 bits (72), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 5/85 (5%)
Query: 18 IKLLMVGLDASGKTTILYKMKLGEIVTT-TPTIGFNVEAVEYKNK----SFCVWDVGGQN 72
KL++VG +GKTT + + GE TIG V + + F VWD G
Sbjct: 13 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 72
Query: 73 KIRALWRHYFRDTLGLTFVVDSSDR 97
K L Y+ + + D + R
Sbjct: 73 KFGGLRDGYYINAQCAIIMFDVTSR 97
>pdb|3ICQ|B Chain B, Karyopherin Nuclear State
pdb|3ICQ|C Chain C, Karyopherin Nuclear State
Length = 171
Score = 32.3 bits (72), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 47/118 (39%), Gaps = 7/118 (5%)
Query: 18 IKLLMVGLDASGKTTILYKMKLGEIVTT-TPTIGFNVEAVEYKNK----SFCVWDVGGQN 72
KL++VG +GKTT + + GE TIG V + + F VWD G
Sbjct: 5 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 64
Query: 73 KIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDL 130
K L Y+ + + D + R N ++ E N +++ NK D+
Sbjct: 65 KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCE--NIPIVLCGNKVDV 120
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 32.3 bits (72), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 57/129 (44%), Gaps = 20/129 (15%)
Query: 18 IKLLMVGLDASGKTTIL-----------YKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVW 66
+K++++G GKT+++ YK +G T + V+ + + +W
Sbjct: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVM------VDDRLVTMQIW 62
Query: 67 DVGGQNKIRALWRHYFR--DTLGLTFVVDSSDRERISEA-RNELHQILSDNELSNAALLV 123
D GQ + ++L ++R D L F V + + + ++ R+E S + N +V
Sbjct: 63 DTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVV 122
Query: 124 FANKQDLPN 132
NK DL N
Sbjct: 123 LGNKIDLEN 131
>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras,
In The Gdp- Bound State
Length = 181
Score = 32.0 bits (71), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 29/66 (43%)
Query: 65 VWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVF 124
+ D GQ + A+ Y R G V +DR+ +E QIL + + +++
Sbjct: 61 ILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLV 120
Query: 125 ANKQDL 130
NK DL
Sbjct: 121 GNKADL 126
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 32.0 bits (71), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 57/129 (44%), Gaps = 20/129 (15%)
Query: 18 IKLLMVGLDASGKTTIL-----------YKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVW 66
+K++++G GKT+++ YK +G T + V+ + + +W
Sbjct: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVM------VDDRLVTMQIW 62
Query: 67 DVGGQNKIRALWRHYFR--DTLGLTFVVDSSDRERISEA-RNELHQILSDNELSNAALLV 123
D GQ + ++L ++R D L F V + + + ++ R+E S + N +V
Sbjct: 63 DTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVV 122
Query: 124 FANKQDLPN 132
NK DL N
Sbjct: 123 LGNKIDLEN 131
>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
pdb|4DJT|B Chain B, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
Length = 218
Score = 31.6 bits (70), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 66/164 (40%), Gaps = 18/164 (10%)
Query: 19 KLLMVGLDASGKTTILYKMKLGEIVTT-TPTIGFNVEAVEYKNKS-----FCVWDVGGQN 72
K+ ++G GKTT + ++ G T+G V + + F VWD GQ
Sbjct: 13 KICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQE 72
Query: 73 KIRALWRHYFRDTLGLTFVVDSSDR---ERISEARNELHQILSDNELSNAALLVFANKQD 129
K L Y+ G D + R + ++ E ++ + A ++V ANK D
Sbjct: 73 KKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGN----EAPIVVCANKID 128
Query: 130 LPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWL 173
+ N +++ KL + L + + SA + GL +L
Sbjct: 129 IKN---RQKISKKLVMEVLKGKNYEYFEISAKTAHNF--GLPFL 167
>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum,
Pfb0500c
Length = 208
Score = 31.2 bits (69), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Query: 60 NKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNA 119
N F +WD GQ + ++ Y+R V D S+ + A+ ++Q+ SN
Sbjct: 92 NIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKIS---SNY 148
Query: 120 ALLVFANKQD 129
+++ ANK D
Sbjct: 149 IIILVANKID 158
>pdb|2XTZ|A Chain A, Crystal Structure Of The G Alpha Protein Atgpa1 From
Arabidopsis Thaliana
pdb|2XTZ|B Chain B, Crystal Structure Of The G Alpha Protein Atgpa1 From
Arabidopsis Thaliana
pdb|2XTZ|C Chain C, Crystal Structure Of The G Alpha Protein Atgpa1 From
Arabidopsis Thaliana
Length = 354
Score = 30.8 bits (68), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 38/101 (37%), Gaps = 13/101 (12%)
Query: 43 VTTTPTIGFNVEAVEYKNKS---FCVWDVGGQNKIRALWRHYFRDTLGLTF--------- 90
V TT + V KS + ++DVGGQ R W H F + F
Sbjct: 162 VRTTGVVEIQFSPVGENKKSGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQ 221
Query: 91 -VVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDL 130
+ + + R+ E + +L + ++F NK D+
Sbjct: 222 TLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDI 262
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 8/43 (18%)
Query: 19 KLLMVGLDASGKTTILYKMKL--------GEIVTTTPTIGFNV 53
KLL++G SGK+TI ++KL GE+ + P I NV
Sbjct: 11 KLLLLGAGESGKSTIFKQIKLLFQTGFDEGELKSYVPVIHANV 53
>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
pdb|2ERY|B Chain B, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
Length = 172
Score = 30.8 bits (68), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 27/68 (39%)
Query: 65 VWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVF 124
+ D GQ + A+ Y R G V +DR E QIL + +++
Sbjct: 57 ILDTAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILI 116
Query: 125 ANKQDLPN 132
NK DL +
Sbjct: 117 GNKADLDH 124
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 30.8 bits (68), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 29/129 (22%), Positives = 56/129 (43%), Gaps = 20/129 (15%)
Query: 18 IKLLMVGLDASGKTTIL-----------YKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVW 66
+K++++G GKT+++ YK +G T + V+ + + +W
Sbjct: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVM------VDDRLVTMQIW 62
Query: 67 DVGGQNKIRALWRHYFR--DTLGLTFVVDSSDRERISEA-RNELHQILSDNELSNAALLV 123
D GQ + ++L ++R D L F V + + + ++ R+E S + N +V
Sbjct: 63 DTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVV 122
Query: 124 FANKQDLPN 132
NK D N
Sbjct: 123 LGNKIDFEN 131
>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 171
Score = 30.8 bits (68), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 10/73 (13%)
Query: 19 KLLMVGLDASGKTTI---LYKMKLGEIVTTTPTIGFNVE--AVEYKNKS-----FCVWDV 68
KL +VG SGKTT+ L K K ++ + T+G +V+ ++ ++K VWD
Sbjct: 2 KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 61
Query: 69 GGQNKIRALWRHY 81
G+ + + H+
Sbjct: 62 AGREEFYSTHPHF 74
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 30.4 bits (67), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 54/121 (44%), Gaps = 9/121 (7%)
Query: 18 IKLLMVGLDASGKTTILYKM---KLGEIVTTTPTIGFNVEAVEY---KNKSFCVWDVGGQ 71
+K++++G GKT+++++ K + T F + V K + VWD GQ
Sbjct: 9 LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQ 68
Query: 72 NKIRALWRHYFR--DTLGLTF-VVDSSDRERISEARNELHQILSDNELSNAALLVFANKQ 128
+ ++L ++R D L + V ++S E I R+E + N ++ NK
Sbjct: 69 ERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKI 128
Query: 129 D 129
D
Sbjct: 129 D 129
>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYF|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
Length = 203
Score = 30.0 bits (66), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 40/89 (44%), Gaps = 10/89 (11%)
Query: 18 IKLLMVGLDASGKTTILYKMKL----GEIVTTTPTIGFNVEA---VEYKNKSFCVWDVGG 70
IK ++VG A GKT +L GE + PT+ N A V+ K + +WD G
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNAFPGEYI---PTVFDNYSANVMVDGKPVNLGLWDTAG 62
Query: 71 QNKIRALWRHYFRDTLGLTFVVDSSDRER 99
Q L + T+G T+ D + R +
Sbjct: 63 QEDYDRLRPLSYPQTVGETYGKDITSRGK 91
>pdb|2YHS|A Chain A, Structure Of The E. Coli Srp Receptor Ftsy
Length = 503
Score = 30.0 bits (66), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 53/112 (47%), Gaps = 18/112 (16%)
Query: 1 MGKLISRLAKRFFPQCRIK--LLMVGLDASGKTTILYKM-----KLGEIVTTTPTIGFNV 53
MG++++++ + + + +LMVG++ GKTT + K+ + G+ V F
Sbjct: 275 MGEILAKVDEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRA 334
Query: 54 EAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARN 105
AVE VW G +N I + +H D+ + F D + ++ARN
Sbjct: 335 AAVE----QLQVW--GQRNNIPVIAQHTGADSASVIF-----DAIQAAKARN 375
>pdb|1FTS|A Chain A, Signal Recognition Particle Receptor From E. Coli
Length = 295
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 16/91 (17%)
Query: 20 LLMVGLDASGKTTILYKM-----KLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKI 74
+LMVG++ GKTT + K+ + G+ V F AVE VW G +N I
Sbjct: 96 ILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVE----QLQVW--GQRNNI 149
Query: 75 RALWRHYFRDTLGLTFVVDSSDRERISEARN 105
+ +H D+ + F D + ++ARN
Sbjct: 150 PVIAQHTGADSASVIF-----DAIQAAKARN 175
>pdb|2XXA|B Chain B, The Crystal Structure Of The Signal Recognition Particle
(Srp) In Complex With Its Receptor(Sr)
pdb|2XXA|D Chain D, The Crystal Structure Of The Signal Recognition Particle
(Srp) In Complex With Its Receptor(Sr)
Length = 302
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 16/91 (17%)
Query: 20 LLMVGLDASGKTTILYKM-----KLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKI 74
+LMVG++ GKTT + K+ + G+ V F AVE VW G +N I
Sbjct: 101 ILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVE----QLQVW--GQRNNI 154
Query: 75 RALWRHYFRDTLGLTFVVDSSDRERISEARN 105
+ +H D+ + F D + ++ARN
Sbjct: 155 PVIAQHTGADSASVIF-----DAIQAAKARN 180
>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 1)
pdb|3PIT|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 2)
Length = 183
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Query: 65 VWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQ-ILSDNELSNAALLV 123
V D GQ + A+ Y R G V +D+ E + HQ IL + + +++
Sbjct: 70 VLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASF-EHVDRFHQLILRVKDRESFPMIL 128
Query: 124 FANKQDL 130
ANK DL
Sbjct: 129 VANKVDL 135
>pdb|2QY9|A Chain A, Structure Of The Ng+1 Construct Of The E. Coli Srp
Receptor Ftsy
Length = 309
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 16/91 (17%)
Query: 20 LLMVGLDASGKTTILYKM-----KLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKI 74
+LMVG++ GKTT + K+ + G+ V F AVE VW G +N I
Sbjct: 102 ILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVE----QLQVW--GQRNNI 155
Query: 75 RALWRHYFRDTLGLTFVVDSSDRERISEARN 105
+ +H D+ + F D + ++ARN
Sbjct: 156 PVIAQHTGADSASVIF-----DAIQAAKARN 181
>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|B Chain B, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|P Chain P, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
Length = 183
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Query: 65 VWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQ-ILSDNELSNAALLV 123
V D GQ + A+ Y R G V +D+ E + HQ IL + + +++
Sbjct: 70 VLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASF-EHVDRFHQLILRVKDRESFPMIL 128
Query: 124 FANKQDL 130
ANK DL
Sbjct: 129 VANKVDL 135
>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive
(Gdp-3'p- Bound) Form
pdb|3E5H|A Chain A, Crystal Structure Of Rab28 Gtpase In The Active
(Gppnhp-Bound) Form
Length = 178
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 53/125 (42%), Gaps = 8/125 (6%)
Query: 17 RIKLLMVGLDASGKT---TILYKMKLGEIVTTTPTIGFNVEAVEYK---NKSFCVWDVGG 70
++K++++G ASGKT T + G+ T + F + + N + +WD+GG
Sbjct: 6 QLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGG 65
Query: 71 QNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLV--FANKQ 128
Q + Y G+ V D ++ + + + +E S LV NK
Sbjct: 66 QTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKI 125
Query: 129 DLPNV 133
DL ++
Sbjct: 126 DLEHM 130
>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp
pdb|3KKQ|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gdp
Length = 183
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Query: 65 VWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQ-ILSDNELSNAALLV 123
V D GQ + A+ Y R G V +D+ E + HQ IL + + +++
Sbjct: 70 VLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASF-EHVDRFHQLILRVKDRESFPMIL 128
Query: 124 FANKQDL 130
ANK DL
Sbjct: 129 VANKVDL 135
>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp
pdb|1X1S|A Chain A, Crystal Structure Of M-ras In Complex With Gppnhp
Length = 178
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Query: 65 VWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQ-ILSDNELSNAALLV 123
V D GQ + A+ Y R G V +D+ E + HQ IL + + +++
Sbjct: 65 VLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASF-EHVDRFHQLILRVKDRESFPMIL 123
Query: 124 FANKQDL 130
ANK DL
Sbjct: 124 VANKVDL 130
>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Gly-12 Mutant Of
P21-H-Ras
Length = 166
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 47/116 (40%), Gaps = 4/116 (3%)
Query: 19 KLLMVGLDASGKTTILYKMKLGEIVTT-TPTIGFNVEAVEYKNKSFCVWDV---GGQNKI 74
KL++VG D GK+ + ++ V PTI + + C+ D+ GQ +
Sbjct: 5 KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 64
Query: 75 RALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDL 130
A+ Y R G V ++ + + QI + + +++ NK DL
Sbjct: 65 SAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|D Chain D, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|F Chain F, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
Length = 188
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 6/86 (6%)
Query: 17 RIKLLMVGLDASGKTTILYKMKLGEIVTT-TPTIGFNVEA---VEYKNKSFCVWDVGGQN 72
R KL++VG A GKT +L G+ PT+ N A V+ + +WD GQ
Sbjct: 10 RRKLVIVGDGACGKTCLLIVNSKGQFPEVYVPTVFENYVADVEVDGRRVELALWDTAGQE 69
Query: 73 KIRALWRHYFRDT--LGLTFVVDSSD 96
L + D+ + + F +D D
Sbjct: 70 DYDRLRPLSYPDSNVVLICFSIDLPD 95
>pdb|3IAU|A Chain A, The Structure Of The Processed Form Of Threonine Deaminase
Isoform 2 From Solanum Lycopersicum
pdb|3IAU|B Chain B, The Structure Of The Processed Form Of Threonine Deaminase
Isoform 2 From Solanum Lycopersicum
Length = 366
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 32 TILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFC--VWDVGGQNKIRALWRHYFRDTLGLT 89
IL K+ GE++ PT G + E +Y V+DV ++ + + D LG+
Sbjct: 19 AILPKVVPGELIVNKPTGGDSDELFQYLVDILASPVYDVAIESPLELAEK--LSDRLGVN 76
Query: 90 FVVDSSDRERI 100
F + D++R+
Sbjct: 77 FYIKREDKQRV 87
>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras-
Binding-Domain Of C-Raf1 Kinase (Rafrbd)
Length = 167
Score = 27.3 bits (59), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 24/118 (20%), Positives = 50/118 (42%), Gaps = 4/118 (3%)
Query: 19 KLLMVGLDASGKTTILYKMKLGEIVTT-TPTIGFNVE---AVEYKNKSFCVWDVGGQNKI 74
KL+++G GK+ + + G V PTI + V+ + + D G +
Sbjct: 5 KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQF 64
Query: 75 RALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPN 132
A+ Y ++ G V + + ++ ++ QIL + + +++ NK DL +
Sbjct: 65 TAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 122
>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPY|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 27.3 bits (59), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/68 (22%), Positives = 29/68 (42%)
Query: 65 VWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVF 124
+ D GQ + A+ Y R G V ++ + + + QI + + +++
Sbjct: 56 ILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLV 115
Query: 125 ANKQDLPN 132
NK DLP+
Sbjct: 116 GNKSDLPS 123
>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPV|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPW|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 27.3 bits (59), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/68 (22%), Positives = 29/68 (42%)
Query: 65 VWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVF 124
+ D GQ + A+ Y R G V ++ + + + QI + + +++
Sbjct: 56 ILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLV 115
Query: 125 ANKQDLPN 132
NK DLP+
Sbjct: 116 GNKSDLPS 123
>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e)
Complexed With Gppnhp And The Ras-Binding-Domain Of
Human C-Raf1, Residues 51-131
pdb|3KUC|A Chain A, Complex Of Rap1a(E30dK31E)GDP WITH RAFRBD(A85KN71R)
Length = 167
Score = 27.3 bits (59), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 24/118 (20%), Positives = 50/118 (42%), Gaps = 4/118 (3%)
Query: 19 KLLMVGLDASGKTTILYKMKLGEIVTT-TPTIGFNVE---AVEYKNKSFCVWDVGGQNKI 74
KL+++G GK+ + + G V PTI + V+ + + D G +
Sbjct: 5 KLVVLGSGGVGKSALTVQFVQGIFVDEYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQF 64
Query: 75 RALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPN 132
A+ Y ++ G V + + ++ ++ QIL + + +++ NK DL +
Sbjct: 65 TAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 122
>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex
pdb|3CF6|R Chain R, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 167
Score = 26.9 bits (58), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 24/118 (20%), Positives = 49/118 (41%), Gaps = 4/118 (3%)
Query: 19 KLLMVGLDASGKTTILYKMKLGEIVTT-TPTIGFNVEAVEYKNKSFC---VWDVGGQNKI 74
KL+++G GK+ + + G V PTI + + C + D G +
Sbjct: 5 KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAGTEQF 64
Query: 75 RALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPN 132
A+ Y ++ G V + + ++ ++ QIL + + +++ NK DL +
Sbjct: 65 TAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLED 122
>pdb|3DPU|A Chain A, Roccor Domain Tandem Of Rab Family Protein (Roco)
pdb|3DPU|B Chain B, Roccor Domain Tandem Of Rab Family Protein (Roco)
Length = 535
Score = 26.6 bits (57), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 15/91 (16%)
Query: 18 IKLLMVGLDASGKTTILYKMKLGEIVTT--TPTIGFNVEAV------------EYKNKSF 63
IK+ ++G +GKT++L K +GE + T G NV E K F
Sbjct: 42 IKVHLIGDGMAGKTSLL-KQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLF 100
Query: 64 CVWDVGGQNKIRALWRHYFRDTLGLTFVVDS 94
WD GGQ + A + + + ++DS
Sbjct: 101 HFWDFGGQEIMHASHQFFMTRSSVYMLLLDS 131
>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBD|B Chain B, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBE|A Chain A, Crystal Structure Of Rac1 P29s Mutant
Length = 187
Score = 26.6 bits (57), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 13/82 (15%)
Query: 6 SRLAKRFFPQCRIKLLMVGLDASGKTTILYKMKL----GEIVTTTPTIGFNVEA---VEY 58
S + +F IK ++VG A GKT +L GE + PT+ N A V+
Sbjct: 2 SHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNAFSGEYI---PTVFDNYSANVMVDG 58
Query: 59 KNKSFCVWDVGGQ---NKIRAL 77
K + +WD GQ +++R L
Sbjct: 59 KPVNLGLWDTAGQEDYDRLRPL 80
>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant
pdb|4GZM|B Chain B, Crystal Structure Of Rac1 F28l Mutant
Length = 204
Score = 26.6 bits (57), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 13/82 (15%)
Query: 6 SRLAKRFFPQCRIKLLMVGLDASGKTTILYKMKL----GEIVTTTPTIGFNVEA---VEY 58
S + +F IK ++VG A GKT +L GE + PT+ N A V+
Sbjct: 19 SHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNALPGEYI---PTVFDNYSANVMVDG 75
Query: 59 KNKSFCVWDVGGQ---NKIRAL 77
K + +WD GQ +++R L
Sbjct: 76 KPVNLGLWDTAGQEDYDRLRPL 97
>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1
pdb|3TH5|B Chain B, Crystal Structure Of Wild-Type Rac1
Length = 204
Score = 26.6 bits (57), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 13/82 (15%)
Query: 6 SRLAKRFFPQCRIKLLMVGLDASGKTTILYKMKL----GEIVTTTPTIGFNVEA---VEY 58
S + +F IK ++VG A GKT +L GE + PT+ N A V+
Sbjct: 19 SHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYI---PTVFDNYSANVMVDG 75
Query: 59 KNKSFCVWDVGGQ---NKIRAL 77
K + +WD GQ +++R L
Sbjct: 76 KPVNLGLWDTAGQEDYDRLRPL 97
>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1
Length = 169
Score = 26.2 bits (56), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 24/118 (20%), Positives = 49/118 (41%), Gaps = 4/118 (3%)
Query: 19 KLLMVGLDASGKTTILYKMKLGEIVTT-TPTIGFNVEAVEYKNKSFC---VWDVGGQNKI 74
KL+++G GK+ + + G V PTI + + C + D G +
Sbjct: 7 KLVVLGSVGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAGTEQF 66
Query: 75 RALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPN 132
A+ Y ++ G V + + ++ ++ QIL + + +++ NK DL +
Sbjct: 67 TAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLED 124
>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1JAI|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Manganese
pdb|1PLJ|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|1PLL|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|821P|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Glycine-12 Mutant Of
P21h-Ras
Length = 166
Score = 26.2 bits (56), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 25/116 (21%), Positives = 46/116 (39%), Gaps = 4/116 (3%)
Query: 19 KLLMVGLDASGKTTILYKMKLGEIVTT-TPTIGFNVEAVEYKNKSFCVWDV---GGQNKI 74
KL++VG GK+ + ++ V PTI + + C+ D+ GQ +
Sbjct: 5 KLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 64
Query: 75 RALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDL 130
A+ Y R G V ++ + + QI + + +++ NK DL
Sbjct: 65 SAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Magnesium
pdb|1PLK|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
Length = 166
Score = 26.2 bits (56), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 25/116 (21%), Positives = 46/116 (39%), Gaps = 4/116 (3%)
Query: 19 KLLMVGLDASGKTTILYKMKLGEIVTT-TPTIGFNVEAVEYKNKSFCVWDV---GGQNKI 74
KL++VG GK+ + ++ V PTI + + C+ D+ GQ +
Sbjct: 5 KLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 64
Query: 75 RALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDL 130
A+ Y R G V ++ + + QI + + +++ NK DL
Sbjct: 65 SAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,041,236
Number of Sequences: 62578
Number of extensions: 188009
Number of successful extensions: 946
Number of sequences better than 100.0: 303
Number of HSP's better than 100.0 without gapping: 215
Number of HSP's successfully gapped in prelim test: 88
Number of HSP's that attempted gapping in prelim test: 607
Number of HSP's gapped (non-prelim): 345
length of query: 181
length of database: 14,973,337
effective HSP length: 93
effective length of query: 88
effective length of database: 9,153,583
effective search space: 805515304
effective search space used: 805515304
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)