Query 030233
Match_columns 181
No_of_seqs 130 out of 1872
Neff 10.9
Searched_HMMs 46136
Date Fri Mar 29 10:36:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030233.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030233hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00223 ADP-ribosylation fact 100.0 3.1E-39 6.6E-44 219.2 21.9 180 1-180 1-180 (181)
2 PTZ00133 ADP-ribosylation fact 100.0 2.5E-38 5.5E-43 215.0 21.6 180 1-180 1-180 (182)
3 smart00177 ARF ARF-like small 100.0 3.9E-37 8.4E-42 208.1 20.9 174 1-178 1-174 (175)
4 KOG0084 GTPase Rab1/YPT1, smal 100.0 3.3E-38 7.1E-43 206.9 12.9 161 16-180 8-174 (205)
5 KOG0094 GTPase Rab6/YPT6/Ryh1, 100.0 2.1E-37 4.6E-42 202.6 15.6 166 12-180 17-187 (221)
6 cd04149 Arf6 Arf6 subfamily. 100.0 1.6E-36 3.5E-41 203.7 20.1 163 13-175 5-167 (168)
7 KOG0092 GTPase Rab5/YPT51 and 100.0 7.1E-38 1.5E-42 204.6 12.1 160 15-180 3-169 (200)
8 cd04150 Arf1_5_like Arf1-Arf5- 100.0 1E-35 2.2E-40 198.3 19.9 158 18-175 1-158 (159)
9 cd04153 Arl5_Arl8 Arl5/Arl8 su 100.0 2.8E-35 6E-40 198.9 21.0 172 4-175 2-173 (174)
10 cd04154 Arl2 Arl2 subfamily. 100.0 6.1E-35 1.3E-39 197.2 20.5 164 12-175 9-172 (173)
11 PF00025 Arf: ADP-ribosylation 100.0 9.9E-35 2.1E-39 196.1 20.5 173 5-177 1-175 (175)
12 KOG0070 GTP-binding ADP-ribosy 100.0 2.7E-35 5.9E-40 192.0 15.4 180 1-180 1-180 (181)
13 cd04158 ARD1 ARD1 subfamily. 100.0 2.7E-34 5.8E-39 193.3 19.8 161 19-179 1-162 (169)
14 KOG0073 GTP-binding ADP-ribosy 100.0 2.3E-34 5.1E-39 183.1 17.6 172 8-179 7-179 (185)
15 smart00178 SAR Sar1p-like memb 100.0 1.2E-33 2.7E-38 192.4 21.5 173 5-177 4-184 (184)
16 KOG0078 GTP-binding protein SE 100.0 5.5E-35 1.2E-39 194.3 13.6 162 14-179 9-175 (207)
17 cd04121 Rab40 Rab40 subfamily. 100.0 1.4E-34 3E-39 197.1 15.1 158 15-179 4-168 (189)
18 cd04120 Rab12 Rab12 subfamily. 100.0 1.7E-34 3.6E-39 198.4 15.3 157 18-179 1-164 (202)
19 KOG0098 GTPase Rab2, small G p 100.0 5.5E-35 1.2E-39 189.9 12.1 161 15-179 4-169 (216)
20 cd04151 Arl1 Arl1 subfamily. 100.0 2.3E-33 5E-38 186.8 19.7 157 19-175 1-157 (158)
21 KOG0080 GTPase Rab18, small G 100.0 4.4E-35 9.5E-40 186.0 10.4 162 15-179 9-175 (209)
22 cd04157 Arl6 Arl6 subfamily. 100.0 2.5E-33 5.5E-38 187.2 19.6 158 19-176 1-162 (162)
23 cd04126 Rab20 Rab20 subfamily. 100.0 3.7E-34 8.1E-39 198.7 15.2 160 18-178 1-190 (220)
24 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 2E-34 4.4E-39 194.3 13.4 158 17-179 2-165 (172)
25 cd01875 RhoG RhoG subfamily. 100.0 2.7E-34 5.9E-39 196.7 13.7 163 15-179 1-178 (191)
26 cd04161 Arl2l1_Arl13_like Arl2 100.0 6.9E-33 1.5E-37 186.0 20.0 157 19-175 1-166 (167)
27 cd00879 Sar1 Sar1 subfamily. 100.0 9.9E-33 2.1E-37 189.0 21.0 164 14-177 16-190 (190)
28 cd00878 Arf_Arl Arf (ADP-ribos 100.0 7.5E-33 1.6E-37 184.3 19.6 157 19-175 1-157 (158)
29 cd04155 Arl3 Arl3 subfamily. 100.0 1.4E-32 3.1E-37 185.5 21.2 171 6-176 3-173 (173)
30 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 5.3E-34 1.2E-38 193.3 14.0 164 14-179 2-181 (182)
31 KOG0394 Ras-related GTPase [Ge 100.0 1.3E-34 2.8E-39 187.8 10.4 164 16-179 8-179 (210)
32 cd04156 ARLTS1 ARLTS1 subfamil 100.0 8.4E-33 1.8E-37 184.4 18.9 157 19-175 1-159 (160)
33 cd04152 Arl4_Arl7 Arl4/Arl7 su 100.0 1.2E-32 2.6E-37 187.4 19.9 164 16-179 2-171 (183)
34 cd04122 Rab14 Rab14 subfamily. 100.0 2.9E-33 6.4E-38 187.8 15.5 157 17-179 2-165 (166)
35 cd04133 Rop_like Rop subfamily 100.0 5.6E-33 1.2E-37 187.3 16.3 155 18-179 2-174 (176)
36 cd04127 Rab27A Rab27a subfamil 100.0 3.6E-33 7.8E-38 189.7 15.4 160 16-180 3-179 (180)
37 KOG0093 GTPase Rab3, small G p 100.0 7.7E-34 1.7E-38 177.8 10.6 158 17-180 21-185 (193)
38 cd04162 Arl9_Arfrp2_like Arl9/ 100.0 2.2E-32 4.8E-37 183.0 18.0 155 19-175 1-163 (164)
39 KOG0071 GTP-binding ADP-ribosy 100.0 3E-32 6.4E-37 169.4 16.9 179 1-179 1-179 (180)
40 cd00877 Ran Ran (Ras-related n 100.0 1.7E-32 3.6E-37 184.0 16.7 155 18-179 1-160 (166)
41 cd04128 Spg1 Spg1p. Spg1p (se 100.0 1.4E-32 3E-37 186.7 16.3 159 18-179 1-167 (182)
42 cd04131 Rnd Rnd subfamily. Th 100.0 3.7E-33 7.9E-38 188.8 13.3 160 17-178 1-176 (178)
43 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 4.4E-32 9.5E-37 187.3 18.7 158 18-179 1-169 (201)
44 PTZ00369 Ras-like protein; Pro 100.0 4.7E-33 1E-37 190.4 13.8 160 15-179 3-168 (189)
45 cd01874 Cdc42 Cdc42 subfamily. 100.0 6.1E-33 1.3E-37 187.5 14.0 158 18-177 2-174 (175)
46 PLN03071 GTP-binding nuclear p 100.0 2.6E-32 5.6E-37 190.3 17.3 157 15-179 11-173 (219)
47 cd04160 Arfrp1 Arfrp1 subfamil 100.0 8.5E-32 1.8E-36 180.8 19.0 157 19-175 1-166 (167)
48 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 9.4E-33 2E-37 192.7 14.6 162 16-179 12-189 (232)
49 cd04175 Rap1 Rap1 subgroup. T 100.0 9.7E-33 2.1E-37 184.9 13.8 157 17-178 1-163 (164)
50 cd04108 Rab36_Rab34 Rab34/Rab3 100.0 3E-32 6.5E-37 183.4 16.0 157 19-179 2-166 (170)
51 cd04119 RJL RJL (RabJ-Like) su 100.0 1E-31 2.2E-36 180.3 18.4 156 18-178 1-167 (168)
52 cd01867 Rab8_Rab10_Rab13_like 100.0 2.3E-32 4.9E-37 183.6 15.2 159 16-180 2-167 (167)
53 cd01865 Rab3 Rab3 subfamily. 100.0 2.3E-32 4.9E-37 183.3 15.1 156 18-179 2-164 (165)
54 cd04117 Rab15 Rab15 subfamily. 100.0 2.4E-32 5.2E-37 182.4 15.1 154 18-176 1-160 (161)
55 cd04136 Rap_like Rap-like subf 100.0 1.3E-32 2.8E-37 184.0 13.6 156 17-177 1-162 (163)
56 cd04111 Rab39 Rab39 subfamily. 100.0 2.5E-32 5.5E-37 189.4 15.3 158 17-179 2-167 (211)
57 cd04138 H_N_K_Ras_like H-Ras/N 100.0 8.4E-32 1.8E-36 179.8 16.9 156 17-177 1-161 (162)
58 cd04144 Ras2 Ras2 subfamily. 100.0 1.6E-32 3.4E-37 187.9 13.1 157 19-180 1-165 (190)
59 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 100.0 5E-32 1.1E-36 181.8 15.2 157 17-179 2-165 (166)
60 KOG0087 GTPase Rab11/YPT3, sma 100.0 1.1E-32 2.4E-37 182.8 11.4 160 16-179 13-177 (222)
61 cd04109 Rab28 Rab28 subfamily. 100.0 6.7E-32 1.5E-36 188.1 15.7 157 18-179 1-167 (215)
62 smart00173 RAS Ras subfamily o 100.0 4E-32 8.6E-37 181.9 13.7 157 18-179 1-163 (164)
63 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 100.0 1.6E-31 3.4E-36 185.7 17.0 162 17-179 1-177 (222)
64 cd04176 Rap2 Rap2 subgroup. T 100.0 3.2E-32 6.9E-37 182.2 13.1 157 17-177 1-162 (163)
65 cd04145 M_R_Ras_like M-Ras/R-R 100.0 4E-32 8.6E-37 181.8 13.4 156 17-177 2-163 (164)
66 cd04125 RabA_like RabA-like su 100.0 1.1E-31 2.3E-36 183.6 15.3 157 18-180 1-164 (188)
67 cd04140 ARHI_like ARHI subfami 100.0 6.5E-32 1.4E-36 181.1 13.9 154 18-176 2-163 (165)
68 KOG0079 GTP-binding protein H- 100.0 9.1E-33 2E-37 173.2 8.7 157 18-179 9-170 (198)
69 smart00176 RAN Ran (Ras-relate 100.0 2.1E-31 4.4E-36 182.8 16.3 149 23-179 1-155 (200)
70 cd04103 Centaurin_gamma Centau 100.0 1.2E-31 2.5E-36 178.3 14.5 154 18-177 1-158 (158)
71 cd04110 Rab35 Rab35 subfamily. 100.0 1.3E-31 2.9E-36 184.5 15.3 158 15-179 4-168 (199)
72 cd01868 Rab11_like Rab11-like. 100.0 1.6E-31 3.5E-36 179.1 15.3 156 16-177 2-164 (165)
73 cd04124 RabL2 RabL2 subfamily. 100.0 4.9E-31 1.1E-35 176.1 17.3 156 18-181 1-161 (161)
74 cd01866 Rab2 Rab2 subfamily. 100.0 1.8E-31 3.9E-36 179.4 15.3 157 17-179 4-167 (168)
75 cd04112 Rab26 Rab26 subfamily. 100.0 6.3E-31 1.4E-35 180.2 18.1 157 18-180 1-165 (191)
76 cd04116 Rab9 Rab9 subfamily. 100.0 1E-30 2.3E-35 176.0 18.7 159 15-177 3-170 (170)
77 cd04159 Arl10_like Arl10-like 100.0 2.4E-30 5.2E-35 171.9 19.9 156 20-175 2-158 (159)
78 cd04113 Rab4 Rab4 subfamily. 100.0 2.2E-31 4.9E-36 177.7 14.8 154 18-177 1-161 (161)
79 cd01864 Rab19 Rab19 subfamily. 100.0 8.4E-31 1.8E-35 175.7 17.5 157 16-177 2-165 (165)
80 KOG0095 GTPase Rab30, small G 100.0 5.6E-32 1.2E-36 170.1 11.0 158 17-178 7-169 (213)
81 cd04134 Rho3 Rho3 subfamily. 100.0 8.3E-32 1.8E-36 184.2 12.9 159 19-179 2-175 (189)
82 cd04115 Rab33B_Rab33A Rab33B/R 100.0 2.1E-31 4.5E-36 179.5 14.6 158 17-178 2-169 (170)
83 PLN03110 Rab GTPase; Provision 100.0 2.7E-31 5.8E-36 185.0 15.3 160 15-179 10-175 (216)
84 cd01871 Rac1_like Rac1-like su 100.0 7.5E-31 1.6E-35 177.2 16.9 157 18-176 2-173 (174)
85 cd04106 Rab23_lke Rab23-like s 100.0 3E-31 6.4E-36 177.3 14.3 152 18-176 1-161 (162)
86 PLN03118 Rab family protein; P 100.0 5E-31 1.1E-35 183.3 15.4 160 15-179 12-178 (211)
87 cd01860 Rab5_related Rab5-rela 100.0 3E-30 6.6E-35 172.6 18.5 155 17-177 1-162 (163)
88 PF00071 Ras: Ras family; Int 100.0 1E-30 2.2E-35 174.7 16.0 154 19-178 1-161 (162)
89 cd04143 Rhes_like Rhes_like su 100.0 4E-30 8.7E-35 181.7 19.4 156 18-177 1-170 (247)
90 cd04118 Rab24 Rab24 subfamily. 100.0 8.4E-31 1.8E-35 179.9 15.0 155 18-179 1-167 (193)
91 KOG0091 GTPase Rab39, small G 100.0 8.6E-32 1.9E-36 171.5 9.1 161 16-179 7-174 (213)
92 cd01863 Rab18 Rab18 subfamily. 100.0 5.8E-30 1.3E-34 170.9 18.2 155 18-177 1-161 (161)
93 smart00175 RAB Rab subfamily o 100.0 7.7E-30 1.7E-34 170.7 18.3 157 18-180 1-164 (164)
94 cd04101 RabL4 RabL4 (Rab-like4 100.0 2E-30 4.3E-35 173.6 15.2 154 18-177 1-163 (164)
95 cd04132 Rho4_like Rho4-like su 100.0 5.4E-30 1.2E-34 175.0 17.5 155 18-179 1-168 (187)
96 cd01892 Miro2 Miro2 subfamily. 100.0 4E-30 8.7E-35 172.9 16.5 155 15-179 2-167 (169)
97 KOG0086 GTPase Rab4, small G p 100.0 1.7E-30 3.6E-35 164.0 13.6 158 17-178 9-171 (214)
98 cd01861 Rab6 Rab6 subfamily. 100.0 2.8E-30 6E-35 172.4 15.0 154 18-177 1-161 (161)
99 PLN03108 Rab family protein; P 100.0 2.6E-30 5.6E-35 179.4 15.2 159 15-179 4-169 (210)
100 smart00174 RHO Rho (Ras homolo 100.0 8.4E-31 1.8E-35 177.1 12.3 158 20-179 1-173 (174)
101 cd01862 Rab7 Rab7 subfamily. 100.0 1.9E-29 4.1E-34 170.0 18.7 159 18-180 1-169 (172)
102 cd04177 RSR1 RSR1 subgroup. R 100.0 2.1E-30 4.5E-35 174.2 13.9 157 17-177 1-163 (168)
103 KOG0075 GTP-binding ADP-ribosy 100.0 4.5E-30 9.7E-35 160.9 14.0 175 3-178 7-182 (186)
104 cd01873 RhoBTB RhoBTB subfamil 100.0 9.7E-31 2.1E-35 179.1 12.0 156 17-176 2-194 (195)
105 cd04139 RalA_RalB RalA/RalB su 100.0 1.4E-29 3E-34 169.4 17.4 157 18-179 1-163 (164)
106 cd04142 RRP22 RRP22 subfamily. 100.0 9.9E-30 2.1E-34 174.7 17.0 159 18-180 1-176 (198)
107 cd01893 Miro1 Miro1 subfamily. 100.0 1.2E-29 2.5E-34 170.3 15.9 158 18-179 1-165 (166)
108 cd04148 RGK RGK subfamily. Th 100.0 6.1E-30 1.3E-34 178.7 14.2 154 18-178 1-163 (221)
109 cd04135 Tc10 TC10 subfamily. 100.0 1.4E-29 3E-34 171.1 15.5 158 18-177 1-173 (174)
110 cd04130 Wrch_1 Wrch-1 subfamil 100.0 3.9E-30 8.5E-35 173.7 12.2 156 18-175 1-171 (173)
111 cd04123 Rab21 Rab21 subfamily. 100.0 1.6E-29 3.5E-34 168.7 14.8 154 18-177 1-161 (162)
112 KOG0081 GTPase Rab27, small G 100.0 2.6E-31 5.7E-36 168.7 4.1 159 18-179 10-182 (219)
113 cd00154 Rab Rab family. Rab G 100.0 1.7E-28 3.7E-33 162.9 17.7 152 18-175 1-159 (159)
114 cd04146 RERG_RasL11_like RERG/ 100.0 7.8E-30 1.7E-34 171.0 11.0 155 19-178 1-164 (165)
115 cd04147 Ras_dva Ras-dva subfam 100.0 1.1E-28 2.4E-33 169.9 16.6 156 19-178 1-163 (198)
116 cd04114 Rab30 Rab30 subfamily. 100.0 8.9E-29 1.9E-33 166.4 15.2 157 16-177 6-168 (169)
117 KOG0088 GTPase Rab21, small G 100.0 2.6E-30 5.7E-35 164.0 6.6 162 14-179 10-176 (218)
118 cd04137 RheB Rheb (Ras Homolog 100.0 2.7E-28 5.8E-33 165.7 17.0 157 18-179 2-164 (180)
119 cd01870 RhoA_like RhoA-like su 100.0 1.8E-28 4E-33 165.8 15.8 159 17-177 1-174 (175)
120 cd00157 Rho Rho (Ras homology) 100.0 6.8E-29 1.5E-33 167.2 12.5 157 18-175 1-170 (171)
121 cd00876 Ras Ras family. The R 100.0 1.6E-28 3.5E-33 163.5 13.4 154 19-177 1-160 (160)
122 PTZ00132 GTP-binding nuclear p 100.0 1.3E-27 2.7E-32 166.7 18.2 161 13-180 5-170 (215)
123 KOG0076 GTP-binding ADP-ribosy 100.0 4.6E-29 9.9E-34 160.6 9.0 180 1-180 1-189 (197)
124 KOG0072 GTP-binding ADP-ribosy 100.0 1.2E-28 2.5E-33 154.0 10.4 181 1-181 1-182 (182)
125 KOG0395 Ras-related GTPase [Ge 100.0 2.5E-28 5.4E-33 166.4 12.2 161 16-179 2-166 (196)
126 KOG0083 GTPase Rab26/Rab37, sm 100.0 4.7E-30 1E-34 158.6 1.6 156 21-180 1-162 (192)
127 cd04129 Rho2 Rho2 subfamily. 100.0 8.6E-28 1.9E-32 164.1 12.1 160 17-178 1-173 (187)
128 cd01897 NOG NOG1 is a nucleola 100.0 1.7E-26 3.8E-31 155.1 16.8 153 18-177 1-167 (168)
129 cd04102 RabL3 RabL3 (Rab-like3 100.0 1E-26 2.2E-31 159.6 15.7 145 18-163 1-175 (202)
130 KOG0097 GTPase Rab14, small G 99.9 6.5E-27 1.4E-31 146.2 11.6 160 16-179 10-174 (215)
131 cd04171 SelB SelB subfamily. 99.9 3.8E-26 8.3E-31 152.7 15.4 152 18-175 1-163 (164)
132 cd01890 LepA LepA subfamily. 99.9 6.8E-26 1.5E-30 153.7 15.4 151 19-179 2-178 (179)
133 cd01898 Obg Obg subfamily. Th 99.9 1E-25 2.2E-30 151.6 16.0 156 19-177 2-170 (170)
134 cd01878 HflX HflX subfamily. 99.9 1.3E-25 2.8E-30 155.4 16.4 152 16-177 40-204 (204)
135 PRK03003 GTP-binding protein D 99.9 2.1E-25 4.4E-30 171.3 18.7 159 16-179 210-383 (472)
136 KOG0074 GTP-binding ADP-ribosy 99.9 3.1E-26 6.7E-31 142.8 11.2 166 13-178 13-179 (185)
137 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 2.6E-25 5.7E-30 149.3 16.2 154 19-178 2-166 (168)
138 KOG0393 Ras-related small GTPa 99.9 1.1E-26 2.4E-31 155.3 8.8 164 15-179 2-180 (198)
139 TIGR00436 era GTP-binding prot 99.9 2.7E-25 5.8E-30 159.7 16.1 153 19-180 2-166 (270)
140 PRK15494 era GTPase Era; Provi 99.9 1.2E-24 2.6E-29 160.4 18.0 156 15-179 50-217 (339)
141 cd00881 GTP_translation_factor 99.9 1.6E-24 3.6E-29 148.0 17.0 156 19-179 1-188 (189)
142 PRK12299 obgE GTPase CgtA; Rev 99.9 7.4E-25 1.6E-29 160.6 15.9 158 18-179 159-329 (335)
143 PRK04213 GTP-binding protein; 99.9 2.2E-25 4.8E-30 153.9 12.2 161 15-180 7-194 (201)
144 PRK03003 GTP-binding protein D 99.9 1.2E-24 2.6E-29 167.1 17.4 151 17-179 38-200 (472)
145 TIGR02528 EutP ethanolamine ut 99.9 3.6E-25 7.8E-30 144.8 12.2 134 19-174 2-141 (142)
146 cd04164 trmE TrmE (MnmE, ThdF, 99.9 3.4E-24 7.3E-29 142.2 15.9 143 18-177 2-156 (157)
147 TIGR00231 small_GTP small GTP- 99.9 5.6E-24 1.2E-28 141.0 16.9 153 17-174 1-160 (161)
148 PLN00023 GTP-binding protein; 99.9 1.3E-24 2.8E-29 156.2 14.7 123 11-133 15-166 (334)
149 TIGR03156 GTP_HflX GTP-binding 99.9 4.2E-24 9.1E-29 157.8 17.6 150 16-176 188-350 (351)
150 TIGR03594 GTPase_EngA ribosome 99.9 1.9E-24 4.2E-29 164.8 16.2 158 16-178 171-344 (429)
151 cd04105 SR_beta Signal recogni 99.9 2.9E-24 6.2E-29 148.2 15.4 157 19-175 2-202 (203)
152 cd01889 SelB_euk SelB subfamil 99.9 7.7E-24 1.7E-28 145.2 16.0 157 18-179 1-187 (192)
153 cd00882 Ras_like_GTPase Ras-li 99.9 4.5E-24 9.7E-29 140.4 14.2 149 22-175 1-157 (157)
154 cd01891 TypA_BipA TypA (tyrosi 99.9 1.4E-23 3E-28 144.2 16.8 144 19-167 4-171 (194)
155 PRK05291 trmE tRNA modificatio 99.9 5E-24 1.1E-28 162.3 15.8 146 15-178 213-370 (449)
156 cd01881 Obg_like The Obg-like 99.9 3.2E-24 7E-29 145.0 12.9 152 22-176 1-175 (176)
157 PTZ00099 rab6; Provisional 99.9 1.7E-24 3.6E-29 146.1 11.2 131 43-179 7-143 (176)
158 TIGR00450 mnmE_trmE_thdF tRNA 99.9 2.3E-23 4.9E-28 157.9 17.9 149 15-179 201-361 (442)
159 TIGR02729 Obg_CgtA Obg family 99.9 1.4E-23 3.1E-28 153.7 16.3 156 18-177 158-328 (329)
160 COG1100 GTPase SAR1 and relate 99.9 1.7E-23 3.7E-28 146.3 16.0 163 15-178 3-185 (219)
161 cd01894 EngA1 EngA1 subfamily. 99.9 1.7E-23 3.6E-28 138.9 15.1 145 21-177 1-157 (157)
162 PRK00454 engB GTP-binding prot 99.9 1.6E-23 3.5E-28 144.0 15.5 164 10-179 17-195 (196)
163 cd01895 EngA2 EngA2 subfamily. 99.9 5.4E-23 1.2E-27 138.5 17.6 155 17-176 2-173 (174)
164 cd01879 FeoB Ferrous iron tran 99.9 1.3E-23 2.7E-28 139.7 13.8 146 22-178 1-157 (158)
165 COG1160 Predicted GTPases [Gen 99.9 9.8E-24 2.1E-28 155.6 14.0 148 18-177 4-164 (444)
166 PRK00089 era GTPase Era; Revie 99.9 3E-23 6.4E-28 150.9 16.1 156 16-179 4-172 (292)
167 cd01888 eIF2_gamma eIF2-gamma 99.9 2.4E-23 5.2E-28 143.8 14.1 160 18-180 1-201 (203)
168 PF02421 FeoB_N: Ferrous iron 99.9 7.3E-24 1.6E-28 138.4 10.8 141 18-173 1-156 (156)
169 cd04163 Era Era subfamily. Er 99.9 7.5E-23 1.6E-27 136.8 15.1 154 16-177 2-168 (168)
170 PRK09518 bifunctional cytidyla 99.9 7.5E-23 1.6E-27 163.8 17.6 159 16-179 449-622 (712)
171 COG1159 Era GTPase [General fu 99.9 3.8E-23 8.2E-28 145.1 13.9 157 15-179 4-173 (298)
172 TIGR03598 GTPase_YsxC ribosome 99.9 3E-23 6.4E-28 140.8 12.8 149 11-167 12-179 (179)
173 PRK11058 GTPase HflX; Provisio 99.9 2E-22 4.3E-27 152.1 18.2 152 18-178 198-362 (426)
174 PRK00093 GTP-binding protein D 99.9 1.1E-22 2.3E-27 155.5 16.9 158 16-178 172-344 (435)
175 PRK15467 ethanolamine utilizat 99.9 7.1E-23 1.5E-27 136.1 13.8 142 19-179 3-148 (158)
176 PF00009 GTP_EFTU: Elongation 99.9 1.1E-22 2.3E-27 139.0 14.9 157 16-178 2-187 (188)
177 KOG4252 GTP-binding protein [S 99.9 2.3E-25 4.9E-30 144.4 1.5 160 16-180 19-183 (246)
178 TIGR03594 GTPase_EngA ribosome 99.9 8.9E-23 1.9E-27 155.7 15.7 149 19-179 1-161 (429)
179 PRK09518 bifunctional cytidyla 99.9 2E-22 4.3E-27 161.4 17.4 152 16-179 274-437 (712)
180 PRK12296 obgE GTPase CgtA; Rev 99.9 2E-22 4.4E-27 153.1 16.1 157 18-179 160-341 (500)
181 TIGR00487 IF-2 translation ini 99.9 3.7E-22 8E-27 155.6 17.5 156 14-175 84-247 (587)
182 COG1160 Predicted GTPases [Gen 99.9 1.8E-22 3.9E-27 149.0 14.7 157 17-178 178-351 (444)
183 TIGR01393 lepA GTP-binding pro 99.9 4.2E-22 9.2E-27 155.9 17.5 154 19-179 5-181 (595)
184 PRK00093 GTP-binding protein D 99.9 2.1E-22 4.6E-27 153.9 15.1 147 18-176 2-160 (435)
185 PRK12297 obgE GTPase CgtA; Rev 99.9 9.6E-22 2.1E-26 147.7 18.2 154 19-179 160-328 (424)
186 PF08477 Miro: Miro-like prote 99.9 3.3E-23 7.1E-28 131.6 7.9 109 19-129 1-119 (119)
187 cd00880 Era_like Era (E. coli 99.9 8E-22 1.7E-26 130.8 14.4 151 22-177 1-163 (163)
188 PRK05306 infB translation init 99.9 1.1E-21 2.5E-26 156.4 16.9 156 14-175 287-449 (787)
189 TIGR00475 selB selenocysteine- 99.9 8.6E-22 1.9E-26 154.0 15.8 155 18-178 1-166 (581)
190 PRK12298 obgE GTPase CgtA; Rev 99.9 2E-21 4.4E-26 145.1 16.4 158 19-179 161-334 (390)
191 KOG1673 Ras GTPases [General f 99.9 1.8E-22 3.9E-27 128.1 8.4 161 16-179 19-187 (205)
192 CHL00189 infB translation init 99.9 5.8E-21 1.3E-25 151.2 17.8 157 14-176 241-408 (742)
193 PRK05433 GTP-binding protein L 99.9 9.4E-21 2E-25 148.5 18.1 155 18-179 8-185 (600)
194 PRK12317 elongation factor 1-a 99.9 2.8E-21 6.1E-26 147.0 14.1 153 14-168 3-195 (425)
195 cd04168 TetM_like Tet(M)-like 99.9 2.2E-20 4.8E-25 131.4 16.8 155 19-178 1-235 (237)
196 TIGR00483 EF-1_alpha translati 99.9 3.4E-21 7.4E-26 146.6 13.5 153 14-168 4-197 (426)
197 COG0218 Predicted GTPase [Gene 99.9 1.6E-20 3.4E-25 125.4 14.7 163 11-180 18-199 (200)
198 COG2229 Predicted GTPase [Gene 99.9 3.4E-20 7.4E-25 121.3 15.9 158 12-176 5-176 (187)
199 cd04166 CysN_ATPS CysN_ATPS su 99.9 1.1E-20 2.4E-25 131.0 14.1 146 19-168 1-184 (208)
200 TIGR01394 TypA_BipA GTP-bindin 99.9 2.1E-20 4.5E-25 146.2 16.9 156 19-179 3-192 (594)
201 TIGR03680 eif2g_arch translati 99.9 1.1E-20 2.3E-25 142.8 14.7 159 15-178 2-196 (406)
202 TIGR00491 aIF-2 translation in 99.9 1.1E-20 2.3E-25 147.3 14.9 153 16-176 3-214 (590)
203 cd01896 DRG The developmentall 99.9 8.4E-20 1.8E-24 128.4 17.8 149 19-177 2-225 (233)
204 KOG3883 Ras family small GTPas 99.9 1.9E-20 4E-25 118.7 12.6 162 16-180 8-177 (198)
205 COG0486 ThdF Predicted GTPase 99.9 3.4E-20 7.3E-25 137.5 15.5 151 15-179 215-377 (454)
206 PRK04000 translation initiatio 99.9 3E-20 6.4E-25 140.4 15.4 160 14-178 6-201 (411)
207 cd01884 EF_Tu EF-Tu subfamily. 99.9 4.5E-20 9.8E-25 126.2 14.9 155 17-176 2-191 (195)
208 PRK10218 GTP-binding protein; 99.9 7.8E-20 1.7E-24 142.9 17.5 159 16-179 4-196 (607)
209 PRK09554 feoB ferrous iron tra 99.9 4.4E-20 9.6E-25 147.9 16.3 151 15-177 1-167 (772)
210 KOG0077 Vesicle coat complex C 99.9 7.3E-21 1.6E-25 122.0 9.3 163 15-177 18-192 (193)
211 TIGR00437 feoB ferrous iron tr 99.8 1.4E-20 3.1E-25 147.4 12.6 142 24-177 1-154 (591)
212 cd01876 YihA_EngB The YihA (En 99.8 8.8E-20 1.9E-24 122.2 14.5 154 19-177 1-170 (170)
213 cd01883 EF1_alpha Eukaryotic e 99.8 2.2E-20 4.9E-25 130.4 11.9 146 19-167 1-194 (219)
214 cd04165 GTPBP1_like GTPBP1-lik 99.8 1.6E-19 3.5E-24 126.0 15.5 152 19-175 1-220 (224)
215 PRK04004 translation initiatio 99.8 1.5E-19 3.3E-24 141.3 16.9 154 14-175 3-215 (586)
216 KOG0096 GTPase Ran/TC4/GSP1 (n 99.8 9.3E-21 2E-25 124.1 8.1 156 17-179 10-170 (216)
217 PF10662 PduV-EutP: Ethanolami 99.8 6.6E-20 1.4E-24 117.3 11.7 135 19-174 3-142 (143)
218 PRK10512 selenocysteinyl-tRNA- 99.8 1.7E-19 3.8E-24 141.7 16.0 155 19-178 2-166 (614)
219 PRK12736 elongation factor Tu; 99.8 6.7E-19 1.5E-23 132.6 15.8 160 14-178 9-201 (394)
220 cd04169 RF3 RF3 subfamily. Pe 99.8 3.5E-18 7.6E-23 122.2 18.6 110 19-133 4-138 (267)
221 PRK12735 elongation factor Tu; 99.8 2.5E-18 5.4E-23 129.6 16.3 158 15-177 10-202 (396)
222 KOG1707 Predicted Ras related/ 99.8 2.1E-19 4.5E-24 135.6 10.1 161 15-178 7-175 (625)
223 KOG1423 Ras-like GTPase ERA [C 99.8 2.2E-18 4.8E-23 121.3 13.9 160 15-180 70-273 (379)
224 PRK13351 elongation factor G; 99.8 4.8E-18 1E-22 136.2 17.0 115 14-133 5-140 (687)
225 cd04167 Snu114p Snu114p subfam 99.8 1.7E-18 3.6E-23 120.6 11.9 155 19-178 2-211 (213)
226 CHL00071 tufA elongation facto 99.8 5.5E-18 1.2E-22 128.2 15.5 147 14-165 9-180 (409)
227 TIGR00485 EF-Tu translation el 99.8 1.1E-17 2.3E-22 126.2 16.6 157 15-176 10-199 (394)
228 PF04670 Gtr1_RagA: Gtr1/RagA 99.8 2.8E-18 6.1E-23 119.4 12.0 158 19-179 1-177 (232)
229 COG2262 HflX GTPases [General 99.8 1.6E-17 3.6E-22 121.4 16.5 154 15-178 190-356 (411)
230 PF09439 SRPRB: Signal recogni 99.8 4.7E-19 1E-23 118.3 7.3 128 16-144 2-138 (181)
231 cd04104 p47_IIGP_like p47 (47- 99.8 1.2E-18 2.6E-23 119.8 9.6 157 17-180 1-186 (197)
232 cd01885 EF2 EF2 (for archaea a 99.8 8.6E-18 1.9E-22 116.9 13.9 108 19-131 2-138 (222)
233 PRK00049 elongation factor Tu; 99.8 1.5E-17 3.2E-22 125.4 16.0 159 14-177 9-202 (396)
234 PLN03126 Elongation factor Tu; 99.8 1.7E-17 3.8E-22 126.9 16.0 146 14-164 78-248 (478)
235 PRK00741 prfC peptide chain re 99.8 7.2E-17 1.6E-21 125.0 19.0 113 16-133 9-146 (526)
236 TIGR02034 CysN sulfate adenyly 99.8 1.3E-17 2.9E-22 126.0 14.3 147 18-168 1-187 (406)
237 cd01886 EF-G Elongation factor 99.8 1.8E-17 3.8E-22 118.7 13.9 109 19-132 1-130 (270)
238 PLN00043 elongation factor 1-a 99.8 2E-17 4.3E-22 126.0 14.8 148 15-167 5-202 (447)
239 KOG1489 Predicted GTP-binding 99.8 1.3E-17 2.8E-22 117.9 12.6 148 18-176 197-365 (366)
240 PRK05124 cysN sulfate adenylyl 99.8 7.8E-18 1.7E-22 129.2 12.5 151 15-169 25-216 (474)
241 COG0370 FeoB Fe2+ transport sy 99.8 1.2E-17 2.6E-22 128.9 13.3 149 16-179 2-165 (653)
242 KOG0090 Signal recognition par 99.8 4.7E-17 1E-21 109.0 14.2 161 16-177 37-238 (238)
243 KOG0462 Elongation factor-type 99.8 1.9E-17 4.1E-22 124.5 13.1 161 13-180 55-237 (650)
244 cd04170 EF-G_bact Elongation f 99.8 1.3E-17 2.8E-22 119.9 11.8 110 19-133 1-131 (268)
245 PTZ00141 elongation factor 1- 99.8 2.3E-17 5E-22 125.7 13.8 150 15-168 5-203 (446)
246 PTZ00327 eukaryotic translatio 99.8 3.1E-17 6.6E-22 124.8 14.1 162 14-178 31-233 (460)
247 PRK05506 bifunctional sulfate 99.8 3.6E-17 7.7E-22 130.0 14.8 152 13-168 20-211 (632)
248 PLN03127 Elongation factor Tu; 99.8 8.2E-17 1.8E-21 122.6 15.7 160 14-178 58-252 (447)
249 TIGR00484 EF-G translation elo 99.7 2.4E-16 5.2E-21 126.3 18.1 112 16-132 9-141 (689)
250 COG0532 InfB Translation initi 99.7 2E-16 4.2E-21 119.2 16.4 156 15-176 3-168 (509)
251 TIGR00503 prfC peptide chain r 99.7 2.5E-16 5.4E-21 122.0 17.1 111 16-132 10-146 (527)
252 COG1084 Predicted GTPase [Gene 99.7 1.6E-16 3.4E-21 113.2 14.5 155 16-177 167-335 (346)
253 KOG1145 Mitochondrial translat 99.7 2.1E-16 4.4E-21 119.0 15.2 158 13-176 149-314 (683)
254 PF01926 MMR_HSR1: 50S ribosom 99.7 3.6E-16 7.7E-21 98.7 14.0 103 19-127 1-116 (116)
255 PRK12739 elongation factor G; 99.7 4E-16 8.7E-21 125.0 16.5 114 14-132 5-139 (691)
256 COG3596 Predicted GTPase [Gene 99.7 5.4E-17 1.2E-21 113.0 9.8 164 12-178 34-222 (296)
257 COG1163 DRG Predicted GTPase [ 99.7 2.2E-16 4.9E-21 112.1 12.9 151 17-177 63-288 (365)
258 cd01899 Ygr210 Ygr210 subfamil 99.7 5E-16 1.1E-20 113.3 15.1 154 20-179 1-270 (318)
259 KOG4423 GTP-binding protein-li 99.7 2.5E-19 5.4E-24 117.1 -2.5 157 18-178 26-194 (229)
260 KOG1191 Mitochondrial GTPase [ 99.7 3.5E-16 7.6E-21 116.5 13.3 163 15-178 266-450 (531)
261 cd01852 AIG1 AIG1 (avrRpt2-ind 99.7 9E-16 2E-20 105.5 14.5 155 18-179 1-185 (196)
262 PRK00007 elongation factor G; 99.7 1.2E-15 2.6E-20 122.3 16.7 112 16-132 9-141 (693)
263 COG0536 Obg Predicted GTPase [ 99.7 2.7E-16 5.8E-21 112.5 11.0 156 19-180 161-335 (369)
264 COG0481 LepA Membrane GTPase L 99.7 4.1E-16 8.8E-21 115.8 11.0 161 13-180 4-188 (603)
265 cd01850 CDC_Septin CDC/Septin. 99.7 3.1E-16 6.7E-21 112.8 9.7 139 16-160 3-184 (276)
266 PRK12740 elongation factor G; 99.7 3.4E-15 7.4E-20 119.7 16.5 106 23-133 1-127 (668)
267 COG5256 TEF1 Translation elong 99.7 3.8E-16 8.3E-21 114.3 9.4 149 15-168 5-201 (428)
268 cd00066 G-alpha G protein alph 99.7 2.3E-15 5E-20 110.4 13.3 133 48-180 148-313 (317)
269 smart00275 G_alpha G protein a 99.7 2.6E-15 5.7E-20 110.9 13.4 133 48-180 171-336 (342)
270 PRK09866 hypothetical protein; 99.7 7.4E-15 1.6E-19 113.6 15.6 113 61-176 230-351 (741)
271 COG1217 TypA Predicted membran 99.6 2.6E-15 5.6E-20 111.3 11.2 157 19-180 7-197 (603)
272 PRK13768 GTPase; Provisional 99.6 1.7E-15 3.6E-20 107.8 8.4 117 61-178 97-247 (253)
273 PRK09602 translation-associate 99.6 3.2E-14 7E-19 106.8 14.1 78 18-95 2-113 (396)
274 COG4917 EutP Ethanolamine util 99.6 4.3E-15 9.3E-20 91.4 7.4 138 19-176 3-144 (148)
275 KOG1532 GTPase XAB1, interacts 99.6 6.4E-15 1.4E-19 102.6 8.1 166 11-179 13-265 (366)
276 COG2895 CysN GTPases - Sulfate 99.6 2.8E-14 6E-19 102.6 10.8 146 15-167 4-192 (431)
277 PRK09435 membrane ATPase/prote 99.6 2.6E-14 5.6E-19 104.5 9.7 108 59-178 147-260 (332)
278 cd01882 BMS1 Bms1. Bms1 is an 99.5 1.3E-13 2.9E-18 96.5 11.9 140 16-164 38-182 (225)
279 TIGR00490 aEF-2 translation el 99.5 3.8E-14 8.2E-19 114.2 9.9 112 16-132 18-152 (720)
280 KOG0082 G-protein alpha subuni 99.5 1.3E-13 2.9E-18 100.4 11.4 133 48-180 182-346 (354)
281 PRK14845 translation initiatio 99.5 2.8E-13 6.1E-18 111.2 14.6 141 28-176 472-671 (1049)
282 cd01853 Toc34_like Toc34-like 99.5 6.7E-13 1.5E-17 94.0 13.8 117 15-133 29-164 (249)
283 KOG1490 GTP-binding protein CR 99.5 3.7E-14 7.9E-19 106.1 7.5 162 16-179 167-342 (620)
284 TIGR00991 3a0901s02IAP34 GTP-b 99.5 1E-12 2.3E-17 94.6 14.5 116 15-132 36-167 (313)
285 COG3276 SelB Selenocysteine-sp 99.5 4.3E-13 9.3E-18 99.2 12.8 154 19-177 2-161 (447)
286 PF04548 AIG1: AIG1 family; I 99.5 2.9E-13 6.2E-18 94.1 10.9 160 18-179 1-187 (212)
287 TIGR00101 ureG urease accessor 99.5 3.3E-13 7.1E-18 92.7 10.9 101 61-178 92-196 (199)
288 PF03029 ATP_bind_1: Conserved 99.5 1.6E-14 3.5E-19 101.6 3.4 113 62-177 92-236 (238)
289 PTZ00416 elongation factor 2; 99.5 7.6E-13 1.6E-17 108.1 12.2 112 15-131 17-157 (836)
290 KOG0458 Elongation factor 1 al 99.5 2.3E-13 4.9E-18 103.5 8.0 156 12-169 172-373 (603)
291 PLN00116 translation elongatio 99.5 8.1E-13 1.8E-17 108.1 11.2 113 14-131 16-163 (843)
292 KOG0461 Selenocysteine-specifi 99.4 2.2E-12 4.8E-17 92.9 11.6 159 15-179 5-194 (522)
293 PF00735 Septin: Septin; Inte 99.4 1.5E-12 3.2E-17 93.8 10.3 121 17-142 4-166 (281)
294 COG5257 GCD11 Translation init 99.4 1.8E-12 3.8E-17 92.5 10.1 160 15-179 8-203 (415)
295 KOG3886 GTP-binding protein [S 99.4 8.5E-13 1.8E-17 89.9 8.0 155 17-174 4-174 (295)
296 COG4108 PrfC Peptide chain rel 99.4 3.3E-12 7.2E-17 94.4 11.7 112 19-135 14-150 (528)
297 TIGR00157 ribosome small subun 99.4 7.6E-13 1.6E-17 93.8 7.4 96 72-176 24-121 (245)
298 PF03308 ArgK: ArgK protein; 99.4 1.7E-12 3.8E-17 90.6 7.8 149 16-176 28-228 (266)
299 smart00010 small_GTPase Small 99.4 1.5E-12 3.2E-17 82.9 6.8 113 18-167 1-115 (124)
300 TIGR00750 lao LAO/AO transport 99.4 1.2E-11 2.6E-16 90.3 12.0 107 59-177 125-237 (300)
301 PRK07560 elongation factor EF- 99.4 3.7E-12 8.1E-17 103.0 10.0 110 18-132 21-153 (731)
302 PF05049 IIGP: Interferon-indu 99.4 6.4E-12 1.4E-16 92.9 9.6 159 15-180 33-220 (376)
303 KOG3905 Dynein light intermedi 99.4 1.3E-11 2.8E-16 88.3 10.7 161 17-178 52-290 (473)
304 KOG1144 Translation initiation 99.3 6.4E-12 1.4E-16 98.1 9.5 155 16-178 474-687 (1064)
305 KOG1707 Predicted Ras related/ 99.3 3.6E-11 7.8E-16 91.8 13.2 153 13-178 421-583 (625)
306 TIGR00073 hypB hydrogenase acc 99.3 4.2E-12 9.1E-17 88.0 7.6 150 13-177 18-206 (207)
307 COG1703 ArgK Putative periplas 99.3 2.5E-11 5.5E-16 86.1 10.9 158 8-177 40-253 (323)
308 PF00350 Dynamin_N: Dynamin fa 99.3 1.2E-11 2.7E-16 82.9 8.7 64 61-128 101-168 (168)
309 COG0480 FusA Translation elong 99.3 7.2E-11 1.6E-15 94.0 11.5 115 14-133 7-143 (697)
310 COG5019 CDC3 Septin family pro 99.3 4.2E-11 9.2E-16 87.0 8.9 123 15-142 21-186 (373)
311 PRK10463 hydrogenase nickel in 99.3 7.4E-12 1.6E-16 89.6 4.9 56 119-177 231-288 (290)
312 TIGR02836 spore_IV_A stage IV 99.2 3.8E-10 8.2E-15 84.0 13.4 151 15-174 15-233 (492)
313 PF05783 DLIC: Dynein light in 99.2 1.6E-10 3.4E-15 88.4 11.6 162 17-179 25-265 (472)
314 COG0378 HypB Ni2+-binding GTPa 99.2 5.7E-11 1.2E-15 79.4 7.9 80 86-177 119-200 (202)
315 TIGR00993 3a0901s04IAP86 chlor 99.2 3.1E-10 6.8E-15 88.8 12.8 115 16-132 117-250 (763)
316 KOG2655 Septin family protein 99.2 1.5E-10 3.4E-15 84.7 9.9 140 16-161 20-200 (366)
317 COG0050 TufB GTPases - transla 99.2 2.8E-10 6E-15 80.6 10.7 160 15-178 10-201 (394)
318 smart00053 DYNc Dynamin, GTPas 99.2 2.6E-09 5.6E-14 75.2 15.7 69 61-133 125-207 (240)
319 KOG1486 GTP-binding protein DR 99.2 8.2E-10 1.8E-14 76.6 12.7 151 17-177 62-287 (364)
320 KOG0410 Predicted GTP binding 99.2 2.2E-10 4.7E-15 82.1 9.9 148 16-178 177-341 (410)
321 KOG3887 Predicted small GTPase 99.2 2.8E-10 6.2E-15 78.4 8.7 160 17-179 27-203 (347)
322 cd04178 Nucleostemin_like Nucl 99.1 2.2E-10 4.7E-15 76.9 7.1 55 16-70 116-171 (172)
323 cd01859 MJ1464 MJ1464. This f 99.1 2.8E-10 6E-15 75.5 7.5 95 74-178 2-96 (156)
324 COG5258 GTPBP1 GTPase [General 99.1 1.6E-09 3.5E-14 79.4 11.6 157 14-175 114-336 (527)
325 PTZ00258 GTP-binding protein; 99.1 2.2E-09 4.8E-14 80.3 11.8 81 15-95 19-126 (390)
326 cd01858 NGP_1 NGP-1. Autoanti 99.1 5.8E-10 1.3E-14 74.0 7.6 55 16-70 101-156 (157)
327 KOG0468 U5 snRNP-specific prot 99.1 1.4E-09 3.1E-14 84.5 10.4 111 15-130 126-261 (971)
328 cd01855 YqeH YqeH. YqeH is an 99.1 7.3E-10 1.6E-14 75.9 8.0 99 73-178 23-125 (190)
329 cd01900 YchF YchF subfamily. 99.1 9.9E-10 2.1E-14 78.8 8.4 76 20-95 1-103 (274)
330 PRK12289 GTPase RsgA; Reviewed 99.1 8.8E-10 1.9E-14 81.8 8.3 88 80-176 85-173 (352)
331 PRK09601 GTP-binding protein Y 99.0 2.3E-09 5.1E-14 79.4 9.8 78 18-95 3-107 (364)
332 COG0012 Predicted GTPase, prob 99.0 8.9E-09 1.9E-13 75.6 12.2 79 17-95 2-108 (372)
333 KOG0705 GTPase-activating prot 99.0 4.1E-10 9E-15 85.6 5.5 156 16-178 29-189 (749)
334 KOG0099 G protein subunit Galp 99.0 2.1E-09 4.5E-14 75.1 8.2 131 49-179 190-370 (379)
335 PRK12288 GTPase RsgA; Reviewed 99.0 2.8E-09 6E-14 79.1 8.8 89 82-176 118-206 (347)
336 COG1161 Predicted GTPases [Gen 99.0 1.2E-09 2.7E-14 80.4 6.9 58 13-70 128-186 (322)
337 KOG1954 Endocytosis/signaling 99.0 8.1E-09 1.8E-13 75.5 10.9 121 17-144 58-234 (532)
338 cd01857 HSR1_MMR1 HSR1/MMR1. 99.0 9.6E-10 2.1E-14 71.7 5.7 52 19-71 85-138 (141)
339 KOG1487 GTP-binding protein DR 99.0 3.3E-09 7E-14 74.0 8.1 150 18-177 60-280 (358)
340 cd01854 YjeQ_engC YjeQ/EngC. 99.0 2.7E-09 5.9E-14 77.5 8.0 88 79-175 73-161 (287)
341 KOG0085 G protein subunit Galp 99.0 1.6E-09 3.5E-14 74.4 5.7 132 48-179 186-350 (359)
342 PRK00098 GTPase RsgA; Reviewed 99.0 1.9E-09 4.2E-14 78.7 6.5 88 81-176 77-165 (298)
343 cd01858 NGP_1 NGP-1. Autoanti 98.9 5.9E-09 1.3E-13 69.2 7.7 91 80-177 4-94 (157)
344 KOG0460 Mitochondrial translat 98.9 1.5E-08 3.2E-13 73.4 9.3 160 15-178 52-245 (449)
345 PRK09563 rbgA GTPase YlqF; Rev 98.9 5.4E-09 1.2E-13 76.0 7.3 57 15-71 119-176 (287)
346 cd01859 MJ1464 MJ1464. This f 98.9 6E-09 1.3E-13 69.1 6.9 55 16-70 100-155 (156)
347 KOG2486 Predicted GTPase [Gene 98.9 6.8E-09 1.5E-13 73.1 7.2 157 15-176 134-314 (320)
348 TIGR03596 GTPase_YlqF ribosome 98.9 5.2E-09 1.1E-13 75.7 6.5 56 16-71 117-173 (276)
349 cd01856 YlqF YlqF. Proteins o 98.9 5.9E-09 1.3E-13 70.2 6.3 57 15-71 113-170 (171)
350 KOG1547 Septin CDC10 and relat 98.9 4.3E-08 9.2E-13 67.8 10.3 123 16-143 45-209 (336)
351 TIGR03597 GTPase_YqeH ribosome 98.9 4.6E-09 9.9E-14 78.6 5.9 99 71-176 50-151 (360)
352 cd01855 YqeH YqeH. YqeH is an 98.9 6.7E-09 1.5E-13 71.1 6.2 55 16-70 126-189 (190)
353 KOG0448 Mitofusin 1 GTPase, in 98.9 9.8E-08 2.1E-12 74.7 12.7 146 12-162 104-310 (749)
354 PF00503 G-alpha: G-protein al 98.8 6.5E-09 1.4E-13 78.8 6.2 130 48-177 222-389 (389)
355 cd01849 YlqF_related_GTPase Yl 98.8 1.7E-08 3.7E-13 66.9 7.1 82 86-176 1-83 (155)
356 cd01849 YlqF_related_GTPase Yl 98.8 2.1E-08 4.5E-13 66.4 5.9 56 15-70 98-154 (155)
357 TIGR03596 GTPase_YlqF ribosome 98.8 2.6E-08 5.6E-13 72.1 6.7 99 68-178 4-103 (276)
358 KOG0467 Translation elongation 98.8 1.3E-08 2.8E-13 80.2 5.4 105 18-130 10-136 (887)
359 KOG0465 Mitochondrial elongati 98.7 3.3E-08 7.1E-13 76.4 6.6 110 19-133 41-171 (721)
360 cd01851 GBP Guanylate-binding 98.7 4.8E-07 1E-11 63.5 11.8 81 17-97 7-104 (224)
361 cd01856 YlqF YlqF. Proteins o 98.7 5.3E-08 1.1E-12 65.6 6.7 90 76-177 11-100 (171)
362 cd01857 HSR1_MMR1 HSR1/MMR1. 98.7 6.5E-08 1.4E-12 63.0 6.1 80 78-165 5-84 (141)
363 KOG1143 Predicted translation 98.7 1.1E-07 2.4E-12 69.8 7.5 152 17-173 167-383 (591)
364 KOG0459 Polypeptide release fa 98.6 2.8E-08 6.1E-13 73.3 3.7 158 14-171 76-279 (501)
365 COG5192 BMS1 GTP-binding prote 98.6 5.3E-07 1.2E-11 69.7 10.1 139 16-161 68-209 (1077)
366 TIGR00092 GTP-binding protein 98.6 3.5E-07 7.5E-12 68.1 8.9 78 18-95 3-108 (368)
367 TIGR03597 GTPase_YqeH ribosome 98.6 1.3E-07 2.9E-12 70.8 6.0 55 18-72 155-215 (360)
368 PRK13796 GTPase YqeH; Provisio 98.6 1.7E-07 3.6E-12 70.5 6.1 55 17-71 160-220 (365)
369 TIGR00157 ribosome small subun 98.6 1.6E-07 3.5E-12 66.7 5.7 53 18-72 121-182 (245)
370 PRK09563 rbgA GTPase YlqF; Rev 98.5 2.3E-07 4.9E-12 67.6 6.4 100 67-178 6-106 (287)
371 PRK12289 GTPase RsgA; Reviewed 98.5 2.6E-07 5.7E-12 68.8 6.6 52 19-71 174-234 (352)
372 PRK13796 GTPase YqeH; Provisio 98.5 5.7E-07 1.2E-11 67.6 8.3 99 72-177 57-158 (365)
373 TIGR03348 VI_IcmF type VI secr 98.5 1.3E-06 2.7E-11 74.7 10.9 110 20-132 114-257 (1169)
374 PRK12288 GTPase RsgA; Reviewed 98.5 1.9E-07 4.1E-12 69.5 5.2 54 19-73 207-269 (347)
375 cd03112 CobW_like The function 98.5 1.3E-06 2.7E-11 58.1 7.9 22 19-40 2-23 (158)
376 KOG3859 Septins (P-loop GTPase 98.5 6.5E-07 1.4E-11 63.4 6.5 112 16-132 41-190 (406)
377 PF03193 DUF258: Protein of un 98.5 2.5E-07 5.3E-12 61.1 4.2 24 18-41 36-59 (161)
378 KOG1491 Predicted GTP-binding 98.5 9.5E-07 2.1E-11 64.2 7.4 81 15-95 18-125 (391)
379 KOG0466 Translation initiation 98.4 1.4E-07 2.9E-12 67.6 2.9 157 15-178 36-241 (466)
380 PRK14974 cell division protein 98.4 4.7E-06 1E-10 61.7 10.8 139 17-171 140-323 (336)
381 COG1618 Predicted nucleotide k 98.4 2.9E-05 6.3E-10 50.9 12.5 144 16-179 4-177 (179)
382 PRK10416 signal recognition pa 98.4 5E-06 1.1E-10 61.3 9.8 138 17-170 114-302 (318)
383 KOG0447 Dynamin-like GTP bindi 98.4 3.4E-05 7.3E-10 59.8 14.3 96 61-159 412-522 (980)
384 PRK01889 GTPase RsgA; Reviewed 98.4 4.5E-06 9.7E-11 62.6 9.3 84 82-174 110-193 (356)
385 KOG0464 Elongation factor G [T 98.3 1.2E-07 2.6E-12 70.6 -0.1 121 19-144 39-183 (753)
386 KOG1424 Predicted GTP-binding 98.3 8.4E-07 1.8E-11 67.6 4.2 54 17-70 314-368 (562)
387 PRK00098 GTPase RsgA; Reviewed 98.3 2.8E-06 6E-11 62.3 6.7 54 18-72 165-227 (298)
388 TIGR00064 ftsY signal recognit 98.3 3.5E-05 7.6E-10 55.7 12.1 96 59-170 153-260 (272)
389 cd01854 YjeQ_engC YjeQ/EngC. 98.3 2.7E-06 5.9E-11 62.0 6.0 55 18-73 162-225 (287)
390 KOG0463 GTP-binding protein GP 98.2 7.2E-06 1.6E-10 60.7 7.4 149 17-171 133-351 (641)
391 cd03114 ArgK-like The function 98.2 2.1E-05 4.6E-10 51.6 8.9 58 60-129 91-148 (148)
392 TIGR01425 SRP54_euk signal rec 98.2 4.1E-05 9E-10 58.4 11.2 109 17-132 100-253 (429)
393 PRK14722 flhF flagellar biosyn 98.1 2.1E-05 4.5E-10 59.1 8.8 116 17-132 137-295 (374)
394 PF00448 SRP54: SRP54-type pro 98.1 1.1E-05 2.5E-10 55.4 6.4 106 19-132 3-154 (196)
395 COG1162 Predicted GTPases [Gen 98.1 6.2E-06 1.4E-10 59.5 4.5 23 19-41 166-188 (301)
396 PRK13695 putative NTPase; Prov 98.1 0.00026 5.5E-09 47.8 12.2 22 18-39 1-22 (174)
397 KOG2485 Conserved ATP/GTP bind 98.1 5.5E-06 1.2E-10 59.6 4.1 56 15-70 141-205 (335)
398 COG1162 Predicted GTPases [Gen 98.0 3E-05 6.6E-10 56.0 7.6 88 84-177 79-166 (301)
399 cd03115 SRP The signal recogni 98.0 9.6E-05 2.1E-09 49.8 9.5 66 60-132 82-153 (173)
400 PRK11537 putative GTP-binding 98.0 0.00012 2.6E-09 54.2 10.5 75 61-143 91-173 (318)
401 cd01983 Fer4_NifH The Fer4_Nif 98.0 8E-05 1.7E-09 44.7 8.2 97 20-126 2-99 (99)
402 COG1419 FlhF Flagellar GTP-bin 98.0 7.2E-05 1.6E-09 56.2 9.3 108 17-132 203-352 (407)
403 KOG2423 Nucleolar GTPase [Gene 98.0 3.7E-06 8E-11 62.4 2.5 67 4-70 294-361 (572)
404 COG3523 IcmF Type VI protein s 98.0 2.6E-05 5.7E-10 65.9 7.6 109 20-132 128-270 (1188)
405 PF02492 cobW: CobW/HypB/UreG, 98.0 1.3E-05 2.9E-10 54.3 4.9 119 19-143 2-167 (178)
406 KOG1534 Putative transcription 98.0 4.9E-05 1.1E-09 52.0 7.3 115 60-178 97-251 (273)
407 cd03111 CpaE_like This protein 98.0 7.8E-05 1.7E-09 46.0 7.6 102 21-127 3-106 (106)
408 KOG2484 GTPase [General functi 98.0 7.9E-06 1.7E-10 60.6 3.6 56 15-70 250-306 (435)
409 KOG0469 Elongation factor 2 [T 97.9 4.5E-05 9.8E-10 58.6 7.3 119 7-130 8-162 (842)
410 cd00009 AAA The AAA+ (ATPases 97.9 0.00037 8E-09 44.9 10.8 37 5-41 7-43 (151)
411 PF09547 Spore_IV_A: Stage IV 97.9 0.00035 7.5E-09 52.9 11.3 151 15-174 15-233 (492)
412 PRK12727 flagellar biosynthesi 97.9 0.00013 2.8E-09 57.0 9.4 108 17-132 350-498 (559)
413 COG0523 Putative GTPases (G3E 97.9 0.00052 1.1E-08 50.8 11.9 91 61-160 85-184 (323)
414 PRK11889 flhF flagellar biosyn 97.9 6.7E-05 1.4E-09 56.6 7.1 23 17-39 241-263 (436)
415 PRK14721 flhF flagellar biosyn 97.9 6E-05 1.3E-09 57.5 6.8 109 17-132 191-340 (420)
416 PF13401 AAA_22: AAA domain; P 97.8 4E-05 8.8E-10 49.0 4.7 24 18-41 5-28 (131)
417 PF06858 NOG1: Nucleolar GTP-b 97.8 9.2E-05 2E-09 39.8 5.1 44 84-129 13-58 (58)
418 cd02042 ParA ParA and ParB of 97.8 0.00022 4.8E-09 43.7 7.6 82 20-108 2-84 (104)
419 cd03222 ABC_RNaseL_inhibitor T 97.8 0.00034 7.3E-09 47.4 8.8 26 18-43 26-51 (177)
420 PRK00771 signal recognition pa 97.8 0.00017 3.7E-09 55.5 8.0 24 16-39 94-117 (437)
421 TIGR02475 CobW cobalamin biosy 97.8 0.0007 1.5E-08 50.6 11.1 77 61-143 93-198 (341)
422 PRK10867 signal recognition pa 97.7 0.00038 8.3E-09 53.5 9.4 22 17-38 100-121 (433)
423 COG3640 CooC CO dehydrogenase 97.7 0.00021 4.5E-09 49.8 7.1 45 82-131 153-198 (255)
424 PF13207 AAA_17: AAA domain; P 97.7 3.1E-05 6.8E-10 48.8 3.0 22 19-40 1-22 (121)
425 PRK12724 flagellar biosynthesi 97.7 8.1E-05 1.8E-09 56.6 5.4 23 17-39 223-245 (432)
426 PRK12726 flagellar biosynthesi 97.7 0.00029 6.3E-09 53.0 8.1 23 17-39 206-228 (407)
427 cd02038 FleN-like FleN is a me 97.7 0.00027 5.8E-09 45.9 7.2 104 22-130 5-109 (139)
428 PRK06995 flhF flagellar biosyn 97.7 0.00015 3.2E-09 56.3 6.7 22 18-39 257-278 (484)
429 PRK10751 molybdopterin-guanine 97.7 0.00019 4E-09 48.2 6.3 53 17-75 6-58 (173)
430 COG1116 TauB ABC-type nitrate/ 97.7 3.5E-05 7.5E-10 54.1 2.9 23 19-41 31-53 (248)
431 PRK14723 flhF flagellar biosyn 97.7 0.00023 5.1E-09 58.0 7.6 109 19-132 187-337 (767)
432 COG0563 Adk Adenylate kinase a 97.7 4.3E-05 9.4E-10 51.7 3.0 23 18-40 1-23 (178)
433 PRK08118 topology modulation p 97.6 5E-05 1.1E-09 50.9 3.1 22 19-40 3-24 (167)
434 PRK07261 topology modulation p 97.6 4.8E-05 1E-09 51.2 3.0 23 18-40 1-23 (171)
435 PRK05703 flhF flagellar biosyn 97.6 0.00067 1.5E-08 52.2 9.3 132 19-166 223-396 (424)
436 cd04178 Nucleostemin_like Nucl 97.6 0.00017 3.6E-09 48.6 5.4 43 86-133 1-45 (172)
437 PRK04195 replication factor C 97.6 0.0011 2.4E-08 52.1 10.5 24 17-40 39-62 (482)
438 PF05621 TniB: Bacterial TniB 97.6 0.0012 2.5E-08 48.1 9.5 104 16-128 60-190 (302)
439 TIGR00959 ffh signal recogniti 97.6 0.00071 1.5E-08 52.0 8.9 22 17-38 99-120 (428)
440 TIGR00235 udk uridine kinase. 97.6 7.6E-05 1.7E-09 51.8 3.4 28 13-40 2-29 (207)
441 COG1126 GlnQ ABC-type polar am 97.6 0.0001 2.2E-09 50.8 3.6 27 18-44 29-55 (240)
442 PF13555 AAA_29: P-loop contai 97.6 9.3E-05 2E-09 40.7 2.8 20 19-38 25-44 (62)
443 KOG1533 Predicted GTPase [Gene 97.5 0.00011 2.3E-09 51.2 3.5 69 60-132 96-177 (290)
444 PF13671 AAA_33: AAA domain; P 97.5 7.5E-05 1.6E-09 48.5 2.7 20 20-39 2-21 (143)
445 PRK05480 uridine/cytidine kina 97.5 9.9E-05 2.1E-09 51.3 3.5 28 13-40 2-29 (209)
446 COG0541 Ffh Signal recognition 97.5 0.00059 1.3E-08 51.7 7.6 109 15-130 98-251 (451)
447 COG1136 SalX ABC-type antimicr 97.5 0.0001 2.2E-09 51.4 3.4 25 19-43 33-57 (226)
448 cd03216 ABC_Carb_Monos_I This 97.5 0.0018 4E-08 43.2 9.4 26 18-43 27-52 (163)
449 cd02019 NK Nucleoside/nucleoti 97.5 9.8E-05 2.1E-09 41.8 2.7 21 20-40 2-22 (69)
450 PRK06547 hypothetical protein; 97.5 0.00018 3.8E-09 48.5 4.4 34 7-40 5-38 (172)
451 PF00005 ABC_tran: ABC transpo 97.5 0.0001 2.3E-09 47.5 3.0 26 18-43 12-37 (137)
452 PRK01889 GTPase RsgA; Reviewed 97.5 0.0001 2.3E-09 55.4 3.2 25 18-42 196-220 (356)
453 PRK08233 hypothetical protein; 97.5 0.00013 2.7E-09 49.5 3.3 25 16-40 2-26 (182)
454 PRK14530 adenylate kinase; Pro 97.5 0.00013 2.8E-09 51.0 3.4 23 17-39 3-25 (215)
455 PRK06731 flhF flagellar biosyn 97.4 0.0015 3.3E-08 47.2 8.5 109 17-132 75-225 (270)
456 KOG0780 Signal recognition par 97.4 0.0011 2.5E-08 49.5 7.9 84 16-99 100-228 (483)
457 PHA00729 NTP-binding motif con 97.4 0.00026 5.6E-09 49.5 4.4 36 5-40 5-40 (226)
458 COG3840 ThiQ ABC-type thiamine 97.4 0.00014 2.9E-09 49.0 2.9 25 18-42 26-50 (231)
459 PF05729 NACHT: NACHT domain 97.4 0.0014 3E-08 43.4 7.8 21 20-40 3-23 (166)
460 PF03266 NTPase_1: NTPase; In 97.4 0.00028 6E-09 47.3 4.3 22 19-40 1-22 (168)
461 PF13521 AAA_28: AAA domain; P 97.4 9.4E-05 2E-09 49.3 2.0 22 19-40 1-22 (163)
462 cd03116 MobB Molybdenum is an 97.4 0.00021 4.5E-09 47.5 3.6 51 19-75 3-53 (159)
463 cd02036 MinD Bacterial cell di 97.4 0.0035 7.6E-08 42.2 9.7 66 62-133 64-129 (179)
464 PRK05416 glmZ(sRNA)-inactivati 97.4 0.0017 3.7E-08 47.4 8.5 20 19-38 8-27 (288)
465 KOG3347 Predicted nucleotide k 97.4 0.00013 2.8E-09 47.2 2.5 25 15-39 5-29 (176)
466 PRK12723 flagellar biosynthesi 97.4 0.0019 4.1E-08 49.1 9.0 109 17-132 174-326 (388)
467 PF00004 AAA: ATPase family as 97.4 0.00015 3.2E-09 46.3 2.7 21 20-40 1-21 (132)
468 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.4 0.0012 2.5E-08 43.2 6.9 26 18-43 27-52 (144)
469 COG3839 MalK ABC-type sugar tr 97.4 0.00015 3.2E-09 53.7 2.9 22 20-41 32-53 (338)
470 PRK06217 hypothetical protein; 97.3 0.0002 4.3E-09 48.8 3.1 23 18-40 2-24 (183)
471 COG0552 FtsY Signal recognitio 97.3 0.00063 1.4E-08 49.9 5.7 25 15-39 137-161 (340)
472 PRK03839 putative kinase; Prov 97.3 0.00021 4.5E-09 48.5 3.1 22 19-40 2-23 (180)
473 cd00071 GMPK Guanosine monopho 97.3 0.0002 4.4E-09 46.4 2.8 21 20-40 2-22 (137)
474 PRK10078 ribose 1,5-bisphospho 97.3 0.00022 4.8E-09 48.7 3.1 23 19-41 4-26 (186)
475 COG1120 FepC ABC-type cobalami 97.3 0.0002 4.3E-09 51.0 2.9 21 19-39 30-50 (258)
476 PF13238 AAA_18: AAA domain; P 97.3 0.00021 4.5E-09 45.4 2.7 21 20-40 1-21 (129)
477 cd02023 UMPK Uridine monophosp 97.3 0.00019 4.1E-09 49.4 2.7 21 20-40 2-22 (198)
478 smart00382 AAA ATPases associa 97.3 0.00025 5.3E-09 45.4 3.1 27 18-44 3-29 (148)
479 PRK09270 nucleoside triphospha 97.3 0.00037 8.1E-09 49.2 4.2 27 15-41 31-57 (229)
480 PRK14738 gmk guanylate kinase; 97.3 0.00037 7.9E-09 48.4 4.0 26 15-40 11-36 (206)
481 TIGR00554 panK_bact pantothena 97.3 0.00036 7.9E-09 50.8 4.1 26 14-39 59-84 (290)
482 PF03205 MobB: Molybdopterin g 97.3 0.00024 5.1E-09 46.2 2.8 22 19-40 2-23 (140)
483 TIGR02322 phosphon_PhnN phosph 97.3 0.00022 4.7E-09 48.3 2.8 22 19-40 3-24 (179)
484 COG4525 TauB ABC-type taurine 97.3 0.00023 4.9E-09 48.5 2.7 23 19-41 33-55 (259)
485 PTZ00301 uridine kinase; Provi 97.3 0.00029 6.4E-09 49.0 3.3 23 16-38 2-24 (210)
486 PF03215 Rad17: Rad17 cell cyc 97.3 0.0034 7.4E-08 49.5 9.4 87 86-176 133-228 (519)
487 cd00820 PEPCK_HprK Phosphoenol 97.3 0.00027 6E-09 43.5 2.7 21 18-38 16-36 (107)
488 cd02025 PanK Pantothenate kina 97.2 0.00023 5E-09 49.9 2.6 21 20-40 2-22 (220)
489 COG3842 PotA ABC-type spermidi 97.2 0.00034 7.3E-09 52.1 3.4 24 20-43 34-57 (352)
490 TIGR03263 guanyl_kin guanylate 97.2 0.00029 6.4E-09 47.7 2.9 23 19-41 3-25 (180)
491 COG4962 CpaF Flp pilus assembl 97.2 0.0005 1.1E-08 50.7 4.1 25 17-41 173-197 (355)
492 PRK14532 adenylate kinase; Pro 97.2 0.00033 7.1E-09 47.8 3.1 23 18-40 1-23 (188)
493 PTZ00088 adenylate kinase 1; P 97.2 0.00036 7.7E-09 49.2 3.3 25 16-40 5-29 (229)
494 cd03255 ABC_MJ0796_Lo1CDE_FtsE 97.2 0.00033 7.1E-09 49.0 3.1 24 18-41 31-54 (218)
495 PF07728 AAA_5: AAA domain (dy 97.2 0.00033 7.1E-09 45.3 2.9 22 19-40 1-22 (139)
496 TIGR00960 3a0501s02 Type II (G 97.2 0.00035 7.5E-09 48.8 3.1 24 18-41 30-53 (216)
497 TIGR01360 aden_kin_iso1 adenyl 97.2 0.00031 6.7E-09 47.8 2.8 21 18-38 4-24 (188)
498 PRK14531 adenylate kinase; Pro 97.2 0.00037 8.1E-09 47.4 3.2 23 18-40 3-25 (183)
499 PRK13833 conjugal transfer pro 97.2 0.0021 4.5E-08 47.6 7.2 24 17-40 144-167 (323)
500 cd03261 ABC_Org_Solvent_Resist 97.2 0.00036 7.9E-09 49.4 3.1 23 19-41 28-50 (235)
No 1
>PLN00223 ADP-ribosylation factor; Provisional
Probab=100.00 E-value=3.1e-39 Score=219.23 Aligned_cols=180 Identities=69% Similarity=1.111 Sum_probs=158.6
Q ss_pred CcchHHHHhhhhCCCCccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEECCeEEEEEEcCCChhhHHHHHh
Q 030233 1 MGKLISRLAKRFFPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRH 80 (181)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~ 80 (181)
||.+++.+.+..+.++.++|+++|+++||||||++++..+.+..+.||.+.+...+...+..+.+||+||++.+..++..
T Consensus 1 m~~~~~~~~~~~~~~~~~ki~ivG~~~~GKTsl~~~l~~~~~~~~~pt~g~~~~~~~~~~~~~~i~D~~Gq~~~~~~~~~ 80 (181)
T PLN00223 1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRH 80 (181)
T ss_pred CchHHHHHHHHhcCCCccEEEEECCCCCCHHHHHHHHccCCCccccCCcceeEEEEEECCEEEEEEECCCCHHHHHHHHH
Confidence 88888888777777888999999999999999999999888777789999888778888999999999999999999999
Q ss_pred hccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeec
Q 030233 81 YFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSA 160 (181)
Q Consensus 81 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (181)
+++++|++|+|+|+++++++.....++..++.....++.|+++++||+|+.+..+.+++.+.++......+.+.++++||
T Consensus 81 ~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~l~l~~~~~~~~~~~~~Sa 160 (181)
T PLN00223 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCA 160 (181)
T ss_pred HhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCceEEEeccC
Confidence 99999999999999999999999888888876655568999999999999887777888877765544445667889999
Q ss_pred cCCCCHHHHHHHHHhhhhcc
Q 030233 161 ISGQGLYEGLDWLSNNISVK 180 (181)
Q Consensus 161 ~~~~~i~~l~~~i~~~~~~~ 180 (181)
++|+|++++|++|.+.+.++
T Consensus 161 ~~g~gv~e~~~~l~~~~~~~ 180 (181)
T PLN00223 161 TSGEGLYEGLDWLSNNIANK 180 (181)
T ss_pred CCCCCHHHHHHHHHHHHhhc
Confidence 99999999999999988765
No 2
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=100.00 E-value=2.5e-38 Score=214.99 Aligned_cols=180 Identities=64% Similarity=1.063 Sum_probs=156.4
Q ss_pred CcchHHHHhhhhCCCCccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEECCeEEEEEEcCCChhhHHHHHh
Q 030233 1 MGKLISRLAKRFFPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRH 80 (181)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~ 80 (181)
||.+++++.++.+..++++|+++|++++|||||++++..+.+..+.||.+.+...+...+..+.+|||||++.+...+..
T Consensus 1 ~~~~~~~~~~~~~~~~~~kv~lvG~~~vGKTsli~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~ 80 (182)
T PTZ00133 1 MGLWLSSAFKSLFGKKEVRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNLKFTMWDVGGQDKLRPLWRH 80 (182)
T ss_pred CchHHHHHHHHhcCCCccEEEEEcCCCCCHHHHHHHHhcCCccccCCccccceEEEEECCEEEEEEECCCCHhHHHHHHH
Confidence 88888899888887888999999999999999999998888777788888887777788899999999999999999999
Q ss_pred hccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeec
Q 030233 81 YFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSA 160 (181)
Q Consensus 81 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (181)
+++.+|++|+|+|+++++++.....++..++......++|+++|+||.|+.+..+.+++...+.........+.++++||
T Consensus 81 ~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa 160 (182)
T PTZ00133 81 YYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMSTTEVTEKLGLHSVRQRNWYIQGCCA 160 (182)
T ss_pred HhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCHHHHHHHhCCCcccCCcEEEEeeeC
Confidence 99999999999999999999999888888876544457899999999999776666777776665544455667889999
Q ss_pred cCCCCHHHHHHHHHhhhhcc
Q 030233 161 ISGQGLYEGLDWLSNNISVK 180 (181)
Q Consensus 161 ~~~~~i~~l~~~i~~~~~~~ 180 (181)
++|.|++++|++|.+.+.++
T Consensus 161 ~tg~gv~e~~~~l~~~i~~~ 180 (182)
T PTZ00133 161 TTAQGLYEGLDWLSANIKKS 180 (182)
T ss_pred CCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999877653
No 3
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=100.00 E-value=3.9e-37 Score=208.10 Aligned_cols=174 Identities=66% Similarity=1.101 Sum_probs=148.4
Q ss_pred CcchHHHHhhhhCCCCccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEECCeEEEEEEcCCChhhHHHHHh
Q 030233 1 MGKLISRLAKRFFPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRH 80 (181)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~ 80 (181)
||.+++.+ +.+++++|+++|++|+|||||++++..+.+..+.||.+.....+......+.+||+||++.+...+..
T Consensus 1 ~~~~~~~~----~~~~~~ki~l~G~~~~GKTsL~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~ 76 (175)
T smart00177 1 MGKLFSKL----FGNKEMRILMVGLDAAGKTTILYKLKLGESVTTIPTIGFNVETVTYKNISFTVWDVGGQDKIRPLWRH 76 (175)
T ss_pred Cchhhhhh----cCCCccEEEEEcCCCCCHHHHHHHHhcCCCCCcCCccccceEEEEECCEEEEEEECCCChhhHHHHHH
Confidence 67765544 33557999999999999999999998777767788888877777778899999999999999999999
Q ss_pred hccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeec
Q 030233 81 YFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSA 160 (181)
Q Consensus 81 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (181)
+++++|++|+|+|++++++++....++..++......+.|+++|+||+|+.+..+.+++.+...........+.++++||
T Consensus 77 ~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa 156 (175)
T smart00177 77 YYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKLGLHSIRDRNWYIQPTCA 156 (175)
T ss_pred HhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCCHHHHHHHhCccccCCCcEEEEEeeC
Confidence 99999999999999999999999999988876644467999999999999876667777777665544556677889999
Q ss_pred cCCCCHHHHHHHHHhhhh
Q 030233 161 ISGQGLYEGLDWLSNNIS 178 (181)
Q Consensus 161 ~~~~~i~~l~~~i~~~~~ 178 (181)
++|+|++++|++|.+.+.
T Consensus 157 ~~g~gv~e~~~~l~~~~~ 174 (175)
T smart00177 157 TSGDGLYEGLTWLSNNLK 174 (175)
T ss_pred CCCCCHHHHHHHHHHHhc
Confidence 999999999999988754
No 4
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.3e-38 Score=206.93 Aligned_cols=161 Identities=21% Similarity=0.335 Sum_probs=134.2
Q ss_pred CccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEEEEEE----CCeEEEEEEcCCChhhHHHHHhhccCCCEEEE
Q 030233 16 CRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVEAVEY----KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTF 90 (181)
Q Consensus 16 ~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~~~~~----~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~ 90 (181)
+.+||+++|++|+|||+|+.||+++.++ .+..|+|++.....+ ...++++|||+|+++|+.+...+|++++++|+
T Consensus 8 ylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii~ 87 (205)
T KOG0084|consen 8 YLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIF 87 (205)
T ss_pred eEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEEE
Confidence 5689999999999999999999999965 467889877665443 56799999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEE-EEEeeccCCCCHHHH
Q 030233 91 VVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWS-IQSCSAISGQGLYEG 169 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~l 169 (181)
|||+++.+||..+..|+.++.+... .++|.++||||||+.+.. .+....+...+...+++ ++++||+++.|+++.
T Consensus 88 vyDiT~~~SF~~v~~Wi~Ei~~~~~-~~v~~lLVGNK~Dl~~~~---~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~~ 163 (205)
T KOG0084|consen 88 VYDITKQESFNNVKRWIQEIDRYAS-ENVPKLLVGNKCDLTEKR---VVSTEEAQEFADELGIPIFLETSAKDSTNVEDA 163 (205)
T ss_pred EEEcccHHHhhhHHHHHHHhhhhcc-CCCCeEEEeeccccHhhe---ecCHHHHHHHHHhcCCcceeecccCCccCHHHH
Confidence 9999999999999999999866543 678999999999997632 22222222222345556 999999999999999
Q ss_pred HHHHHhhhhcc
Q 030233 170 LDWLSNNISVK 180 (181)
Q Consensus 170 ~~~i~~~~~~~ 180 (181)
|..++..+.++
T Consensus 164 F~~la~~lk~~ 174 (205)
T KOG0084|consen 164 FLTLAKELKQR 174 (205)
T ss_pred HHHHHHHHHHh
Confidence 99999988765
No 5
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.1e-37 Score=202.61 Aligned_cols=166 Identities=19% Similarity=0.307 Sum_probs=142.2
Q ss_pred hCCCCccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEEE--EEE--CCeEEEEEEcCCChhhHHHHHhhccCCC
Q 030233 12 FFPQCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVEA--VEY--KNKSFCVWDVGGQNKIRALWRHYFRDTL 86 (181)
Q Consensus 12 ~~~~~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~~--~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~d 86 (181)
..+.+.+|++++|+.++||||||+|++.+.+. .+.+|+|++... +.+ ..+.+++|||+|+|+|+.+.+.+++++.
T Consensus 17 ~~~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~ 96 (221)
T KOG0094|consen 17 GAPLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSS 96 (221)
T ss_pred CccceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCe
Confidence 34567799999999999999999999999975 578899876544 444 5578999999999999999999999999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCCCH
Q 030233 87 GLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGL 166 (181)
Q Consensus 87 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 166 (181)
++|+|||+++..||.....|+..++..++..++.+++||||.||.+ .+++..+.+...+...+..|+++||+.|+||
T Consensus 97 vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~d---krqvs~eEg~~kAkel~a~f~etsak~g~NV 173 (221)
T KOG0094|consen 97 VAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSD---KRQVSIEEGERKAKELNAEFIETSAKAGENV 173 (221)
T ss_pred EEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccc---hhhhhHHHHHHHHHHhCcEEEEecccCCCCH
Confidence 9999999999999999999999999988766799999999999987 3444444444444566778999999999999
Q ss_pred HHHHHHHHhhhhcc
Q 030233 167 YEGLDWLSNNISVK 180 (181)
Q Consensus 167 ~~l~~~i~~~~~~~ 180 (181)
..+|..|...+...
T Consensus 174 k~lFrrIaa~l~~~ 187 (221)
T KOG0094|consen 174 KQLFRRIAAALPGM 187 (221)
T ss_pred HHHHHHHHHhccCc
Confidence 99999999887654
No 6
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=100.00 E-value=1.6e-36 Score=203.74 Aligned_cols=163 Identities=62% Similarity=1.063 Sum_probs=140.9
Q ss_pred CCCCccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEECCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEE
Q 030233 13 FPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVV 92 (181)
Q Consensus 13 ~~~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (181)
+.++.++|+++|++++|||||++++..+.+..+.||.+.+...+...+..+.+|||||++.+...+..+++.+|++++|+
T Consensus 5 ~~~~~~kv~i~G~~~~GKTsli~~l~~~~~~~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~ 84 (168)
T cd04149 5 FGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVV 84 (168)
T ss_pred cCCCccEEEEECcCCCCHHHHHHHHccCCCccccCCcccceEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEE
Confidence 34567999999999999999999999888777788888887777778899999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHHHH
Q 030233 93 DSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDW 172 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 172 (181)
|++++.++.+...++..++......+.|+++|+||+|+.+....+++.+...........+.++++||++|.|++++|++
T Consensus 85 D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~~~~~ 164 (168)
T cd04149 85 DSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTW 164 (168)
T ss_pred eCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHHHHHH
Confidence 99999999999999988876544467899999999999766667777777655444445568999999999999999999
Q ss_pred HHh
Q 030233 173 LSN 175 (181)
Q Consensus 173 i~~ 175 (181)
|.+
T Consensus 165 l~~ 167 (168)
T cd04149 165 LSS 167 (168)
T ss_pred Hhc
Confidence 975
No 7
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.1e-38 Score=204.62 Aligned_cols=160 Identities=21% Similarity=0.344 Sum_probs=135.6
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhcCCcccc-cCccceeEEE--EEEC--CeEEEEEEcCCChhhHHHHHhhccCCCEEE
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKLGEIVTT-TPTIGFNVEA--VEYK--NKSFCVWDVGGQNKIRALWRHYFRDTLGLT 89 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~-~~~~~~~~~~--~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii 89 (181)
..++|++++|+.++|||||+-|+..+.|.+. .+|+|-...+ +... .++|.||||+|+++|.++.+.++++++++|
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi 82 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI 82 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence 4679999999999999999999999998775 8899855444 4444 488999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC--CCCHHHHHhhhCccccCCccEEEEEeeccCCCCHH
Q 030233 90 FVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPN--VMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLY 167 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (181)
+|||+++.+||.....|+..+-+... +++-+.+||||+|+.+ ..+.++.... +...+..|+++||++|.|++
T Consensus 83 vvYDit~~~SF~~aK~WvkeL~~~~~-~~~vialvGNK~DL~~~R~V~~~ea~~y-----Ae~~gll~~ETSAKTg~Nv~ 156 (200)
T KOG0092|consen 83 VVYDITDEESFEKAKNWVKELQRQAS-PNIVIALVGNKADLLERREVEFEEAQAY-----AESQGLLFFETSAKTGENVN 156 (200)
T ss_pred EEEecccHHHHHHHHHHHHHHHhhCC-CCeEEEEecchhhhhhcccccHHHHHHH-----HHhcCCEEEEEecccccCHH
Confidence 99999999999999999999866543 7788889999999976 3333333332 24567789999999999999
Q ss_pred HHHHHHHhhhhcc
Q 030233 168 EGLDWLSNNISVK 180 (181)
Q Consensus 168 ~l~~~i~~~~~~~ 180 (181)
++|..|.+.+...
T Consensus 157 ~if~~Ia~~lp~~ 169 (200)
T KOG0092|consen 157 EIFQAIAEKLPCS 169 (200)
T ss_pred HHHHHHHHhccCc
Confidence 9999999998754
No 8
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=100.00 E-value=1e-35 Score=198.26 Aligned_cols=158 Identities=73% Similarity=1.177 Sum_probs=136.0
Q ss_pred cEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEECCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCCc
Q 030233 18 IKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDR 97 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~ 97 (181)
+||+++|.++||||||++++..+.+..+.||.+.+...+......+.+||+||++.+...+..+++++|++++|+|++++
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~~~~pt~g~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~~ 80 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 80 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCcccCCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCH
Confidence 58999999999999999999888877778888888777778889999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHHHHHHh
Q 030233 98 ERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSN 175 (181)
Q Consensus 98 ~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~ 175 (181)
++++....++..++......+.|+++++||+|+.+....+++........+....+.++++||++|+|++++|++|.+
T Consensus 81 ~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~~~l~~ 158 (159)
T cd04150 81 ERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSN 158 (159)
T ss_pred HHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHHHHHhc
Confidence 999999998888876544457899999999999765555666665554444455677899999999999999999975
No 9
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=100.00 E-value=2.8e-35 Score=198.94 Aligned_cols=172 Identities=48% Similarity=0.882 Sum_probs=147.4
Q ss_pred hHHHHhhhhCCCCccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEECCeEEEEEEcCCChhhHHHHHhhcc
Q 030233 4 LISRLAKRFFPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFR 83 (181)
Q Consensus 4 ~~~~~~~~~~~~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~ 83 (181)
++.+..+.+.+++.++|+++|++++|||||+++++++.+....+|.+.+...+.+.+..+.+||+||++.+...+..+++
T Consensus 2 ~~~~~~~~~~~~~~~kv~~~G~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~ 81 (174)
T cd04153 2 LFSSLWSLFFPRKEYKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSNVEEIVYKNIRFLMWDIGGQESLRSSWNTYYT 81 (174)
T ss_pred chhHHHHHhcCCCccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceEEEEECCeEEEEEECCCCHHHHHHHHHHhh
Confidence 34556666666678999999999999999999999888777888988888888888999999999999999999999999
Q ss_pred CCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCC
Q 030233 84 DTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISG 163 (181)
Q Consensus 84 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (181)
.+|++++|+|+++++++.....++..+++.....+.|+++++||+|+....+.+++.+.+.........++++++||++|
T Consensus 82 ~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g 161 (174)
T cd04153 82 NTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISESLGLTSIRDHTWHIQGCCALTG 161 (174)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEecccCCC
Confidence 99999999999999999888888888877654467999999999999775566777776654444455678999999999
Q ss_pred CCHHHHHHHHHh
Q 030233 164 QGLYEGLDWLSN 175 (181)
Q Consensus 164 ~~i~~l~~~i~~ 175 (181)
+|++++|++|.+
T Consensus 162 ~gi~e~~~~l~~ 173 (174)
T cd04153 162 EGLPEGLDWIAS 173 (174)
T ss_pred CCHHHHHHHHhc
Confidence 999999999975
No 10
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=100.00 E-value=6.1e-35 Score=197.17 Aligned_cols=164 Identities=43% Similarity=0.859 Sum_probs=141.0
Q ss_pred hCCCCccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEECCeEEEEEEcCCChhhHHHHHhhccCCCEEEEE
Q 030233 12 FFPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFV 91 (181)
Q Consensus 12 ~~~~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v 91 (181)
..++..++|+++|++|+|||||++++.+..+..+.+|.++....+.+....+.+||+||++.+...+..+++.+|++++|
T Consensus 9 ~~~~~~~kv~ivG~~~~GKTsL~~~l~~~~~~~~~~t~g~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v 88 (173)
T cd04154 9 KLKEREMRILILGLDNAGKTTILKKLLGEDIDTISPTLGFQIKTLEYEGYKLNIWDVGGQKTLRPYWRNYFESTDALIWV 88 (173)
T ss_pred hcCCCccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEE
Confidence 34566799999999999999999999988877778888887777778889999999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHHH
Q 030233 92 VDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLD 171 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 171 (181)
+|++++.++.....++..++......+.|+++|+||+|+.+....+++...+.........++++++||++|+|++++|+
T Consensus 89 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~ 168 (173)
T cd04154 89 VDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALSEEEIREALELDKISSHHWRIQPCSAVTGEGLLQGID 168 (173)
T ss_pred EECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCCCHHHHHHHhCccccCCCceEEEeccCCCCcCHHHHHH
Confidence 99999999999888888887654446899999999999977666666666665433345677899999999999999999
Q ss_pred HHHh
Q 030233 172 WLSN 175 (181)
Q Consensus 172 ~i~~ 175 (181)
++.+
T Consensus 169 ~l~~ 172 (173)
T cd04154 169 WLVD 172 (173)
T ss_pred HHhc
Confidence 9864
No 11
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=100.00 E-value=9.9e-35 Score=196.06 Aligned_cols=173 Identities=49% Similarity=0.888 Sum_probs=157.5
Q ss_pred HHHHhhhhCC-CCccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEECCeEEEEEEcCCChhhHHHHHhhcc
Q 030233 5 ISRLAKRFFP-QCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFR 83 (181)
Q Consensus 5 ~~~~~~~~~~-~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~ 83 (181)
|+.+.+.... .+..+|+++|..++||||+++++..+......||.|++...+.+.+..+.+||.+|+..++..|..++.
T Consensus 1 ~~~~~~~~~~~~~~~~ililGl~~sGKTtll~~l~~~~~~~~~pT~g~~~~~i~~~~~~~~~~d~gG~~~~~~~w~~y~~ 80 (175)
T PF00025_consen 1 FSSVLSKLKSKKKEIKILILGLDGSGKTTLLNRLKNGEISETIPTIGFNIEEIKYKGYSLTIWDLGGQESFRPLWKSYFQ 80 (175)
T ss_dssp HHHHHHHCTTTTSEEEEEEEESTTSSHHHHHHHHHSSSEEEEEEESSEEEEEEEETTEEEEEEEESSSGGGGGGGGGGHT
T ss_pred CHHHHHHhcccCcEEEEEEECCCccchHHHHHHhhhccccccCcccccccceeeeCcEEEEEEeccccccccccceeecc
Confidence 3455556554 789999999999999999999999988888999999999999999999999999999999999999999
Q ss_pred CCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccC-CccEEEEEeeccC
Q 030233 84 DTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLG-QRRWSIQSCSAIS 162 (181)
Q Consensus 84 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~ 162 (181)
.+|++|||+|.++++.+.+....+..++......+.|+++++||.|+.+..+.+++...+...... ...+.++.|||.+
T Consensus 81 ~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~ 160 (175)
T PF00025_consen 81 NADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGLEKLKNKRPWSVFSCSAKT 160 (175)
T ss_dssp TESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTGGGTTSSSCEEEEEEBTTT
T ss_pred ccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhhhhcccCCceEEEeeeccC
Confidence 999999999999999999999999999988777789999999999999888899999888766654 6788999999999
Q ss_pred CCCHHHHHHHHHhhh
Q 030233 163 GQGLYEGLDWLSNNI 177 (181)
Q Consensus 163 ~~~i~~l~~~i~~~~ 177 (181)
|+|+.+.++||.+++
T Consensus 161 g~Gv~e~l~WL~~~~ 175 (175)
T PF00025_consen 161 GEGVDEGLEWLIEQI 175 (175)
T ss_dssp TBTHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHhcC
Confidence 999999999999864
No 12
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.7e-35 Score=191.95 Aligned_cols=180 Identities=67% Similarity=1.091 Sum_probs=173.1
Q ss_pred CcchHHHHhhhhCCCCccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEECCeEEEEEEcCCChhhHHHHHh
Q 030233 1 MGKLISRLAKRFFPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRH 80 (181)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~ 80 (181)
||.++++++..+++.++.+|+++|-.++||||++.++..+++..+.||+|++...+.+.+..+++||.+|+++++..|..
T Consensus 1 MG~~~s~~~~~~~~~~e~~IlmlGLD~AGKTTILykLk~~E~vttvPTiGfnVE~v~ykn~~f~vWDvGGq~k~R~lW~~ 80 (181)
T KOG0070|consen 1 MGLIFSKLFSGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTVPTIGFNVETVEYKNISFTVWDVGGQEKLRPLWKH 80 (181)
T ss_pred CcchhhhhhhhccCcceEEEEEEeccCCCceeeeEeeccCCcccCCCccccceeEEEEcceEEEEEecCCCcccccchhh
Confidence 89999999999999999999999999999999999999999888899999999999999999999999999999999999
Q ss_pred hccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeec
Q 030233 81 YFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSA 160 (181)
Q Consensus 81 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (181)
+++..+++|||+|.++++.+.+.++.+..++.+....+.|+++++||.|++...+..++...+.+.....+.+.+..|+|
T Consensus 81 Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~~~w~iq~~~a 160 (181)
T KOG0070|consen 81 YFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRSRNWHIQSTCA 160 (181)
T ss_pred hccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhccCCCCcEEeeccc
Confidence 99999999999999999999999999999999987789999999999999999999999999999988889999999999
Q ss_pred cCCCCHHHHHHHHHhhhhcc
Q 030233 161 ISGQGLYEGLDWLSNNISVK 180 (181)
Q Consensus 161 ~~~~~i~~l~~~i~~~~~~~ 180 (181)
.+|+|+.+.++|+.+.+..+
T Consensus 161 ~~G~GL~egl~wl~~~~~~~ 180 (181)
T KOG0070|consen 161 ISGEGLYEGLDWLSNNLKKR 180 (181)
T ss_pred cccccHHHHHHHHHHHHhcc
Confidence 99999999999999998765
No 13
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=100.00 E-value=2.7e-34 Score=193.32 Aligned_cols=161 Identities=53% Similarity=0.960 Sum_probs=137.7
Q ss_pred EEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEECCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCCcc
Q 030233 19 KLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRE 98 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~ 98 (181)
||+++|+++||||||++++.+..+..+.||.+.....+...+..+.+||+||++.+...+..+++.+|++++|+|+++++
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~~~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~~~ 80 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRD 80 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCCcCCcCceeEEEEEECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeCCcHH
Confidence 58999999999999999999988777888888877777888999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCcccc-CCccEEEEEeeccCCCCHHHHHHHHHhhh
Q 030233 99 RISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSL-GQRRWSIQSCSAISGQGLYEGLDWLSNNI 177 (181)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~ 177 (181)
+++....|+..+++.....+.|+++|+||+|+.+..+.+++......... ....+.+++|||++|.|++++|++|.+.+
T Consensus 81 s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~l~~~~ 160 (169)
T cd04158 81 RVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQL 160 (169)
T ss_pred HHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHHHHHHHHH
Confidence 99999999999887654467899999999999776666666665543221 12345789999999999999999999876
Q ss_pred hc
Q 030233 178 SV 179 (181)
Q Consensus 178 ~~ 179 (181)
.+
T Consensus 161 ~~ 162 (169)
T cd04158 161 VA 162 (169)
T ss_pred hh
Confidence 54
No 14
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=100.00 E-value=2.3e-34 Score=183.14 Aligned_cols=172 Identities=42% Similarity=0.822 Sum_probs=157.5
Q ss_pred HhhhhCCCCccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEECCeEEEEEEcCCChhhHHHHHhhccCCCE
Q 030233 8 LAKRFFPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLG 87 (181)
Q Consensus 8 ~~~~~~~~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ 87 (181)
+.+.-...++++|+++|..|+||||+++++.+.+.....||.|++.....+.+..+++||.+|+..+++.|.++|..+|+
T Consensus 7 lrk~k~kerE~riLiLGLdNsGKTti~~kl~~~~~~~i~pt~gf~Iktl~~~~~~L~iwDvGGq~~lr~~W~nYfestdg 86 (185)
T KOG0073|consen 7 LRKQKLKEREVRILILGLDNSGKTTIVKKLLGEDTDTISPTLGFQIKTLEYKGYTLNIWDVGGQKTLRSYWKNYFESTDG 86 (185)
T ss_pred HHHHHhhhheeEEEEEecCCCCchhHHHHhcCCCccccCCccceeeEEEEecceEEEEEEcCCcchhHHHHHHhhhccCe
Confidence 33333456699999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCcccc-CCccEEEEEeeccCCCCH
Q 030233 88 LTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSL-GQRRWSIQSCSAISGQGL 166 (181)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~~i 166 (181)
+|+|+|.+++..+++....+..++......+.|+++++||.|+....+.+++....++... +...++++.|||.+|+++
T Consensus 87 lIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l 166 (185)
T KOG0073|consen 87 LIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCSAVTGEDL 166 (185)
T ss_pred EEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEeccccccH
Confidence 9999999999999999999988887766678999999999999988899999998887766 788999999999999999
Q ss_pred HHHHHHHHhhhhc
Q 030233 167 YEGLDWLSNNISV 179 (181)
Q Consensus 167 ~~l~~~i~~~~~~ 179 (181)
.+-++|+++.+.+
T Consensus 167 ~~gidWL~~~l~~ 179 (185)
T KOG0073|consen 167 LEGIDWLCDDLMS 179 (185)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988754
No 15
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=1.2e-33 Score=192.39 Aligned_cols=173 Identities=33% Similarity=0.586 Sum_probs=146.6
Q ss_pred HHHHhhhh-CCCCccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEECCeEEEEEEcCCChhhHHHHHhhcc
Q 030233 5 ISRLAKRF-FPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFR 83 (181)
Q Consensus 5 ~~~~~~~~-~~~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~ 83 (181)
+.++.+.+ .+.+.++|+++|.+|+|||||++++.++.+..+.||.+.+...+...+..+.+||+||++.++..+..++.
T Consensus 4 ~~~~~~~~~~~~~~~~i~ivG~~~~GKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~ 83 (184)
T smart00178 4 FYDILASLGLWNKHAKILFLGLDNAGKTTLLHMLKNDRLAQHQPTQHPTSEELAIGNIKFTTFDLGGHQQARRLWKDYFP 83 (184)
T ss_pred HHHHHHHhccccccCEEEEECCCCCCHHHHHHHHhcCCCcccCCccccceEEEEECCEEEEEEECCCCHHHHHHHHHHhC
Confidence 44555544 34788999999999999999999999988766677777777777778899999999999999999999999
Q ss_pred CCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCcccc-------CCccEEEE
Q 030233 84 DTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSL-------GQRRWSIQ 156 (181)
Q Consensus 84 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~-------~~~~~~~~ 156 (181)
.+|++++|+|+++++++.....++..+++.....+.|+++++||+|+....+.+++.+.+..... ..+...++
T Consensus 84 ~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~ 163 (184)
T smart00178 84 EVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGLTNTTGSKGKVGVRPLEVF 163 (184)
T ss_pred CCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHcCCCcccccccccCCceeEEE
Confidence 99999999999999999998888888876544467999999999999877788888887765432 22567899
Q ss_pred EeeccCCCCHHHHHHHHHhhh
Q 030233 157 SCSAISGQGLYEGLDWLSNNI 177 (181)
Q Consensus 157 ~~Sa~~~~~i~~l~~~i~~~~ 177 (181)
+|||++|+|++++++||.+++
T Consensus 164 ~~Sa~~~~g~~~~~~wl~~~~ 184 (184)
T smart00178 164 MCSVVRRMGYGEGFKWLSQYI 184 (184)
T ss_pred EeecccCCChHHHHHHHHhhC
Confidence 999999999999999998753
No 16
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.5e-35 Score=194.33 Aligned_cols=162 Identities=22% Similarity=0.344 Sum_probs=136.0
Q ss_pred CCCccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEEE--EEE--CCeEEEEEEcCCChhhHHHHHhhccCCCEE
Q 030233 14 PQCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVEA--VEY--KNKSFCVWDVGGQNKIRALWRHYFRDTLGL 88 (181)
Q Consensus 14 ~~~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~~--~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~d~i 88 (181)
..+.++|+++|+++||||+++.+|..+.+. .+..|+|++... +.. ....+++|||+|+++++.+...+++.++++
T Consensus 9 ~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~gi 88 (207)
T KOG0078|consen 9 YDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGI 88 (207)
T ss_pred cceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCee
Confidence 346789999999999999999999999865 456777766554 444 457899999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCCCHHH
Q 030233 89 TFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYE 168 (181)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (181)
++|||++++.||.++..|+..+-++. ..++|.++||||+|+.. .+++....+...+.+.++.|+|+||++|.||++
T Consensus 89 ~LvyDitne~Sfeni~~W~~~I~e~a-~~~v~~~LvGNK~D~~~---~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~e 164 (207)
T KOG0078|consen 89 LLVYDITNEKSFENIRNWIKNIDEHA-SDDVVKILVGNKCDLEE---KRQVSKERGEALAREYGIKFFETSAKTNFNIEE 164 (207)
T ss_pred EEEEEccchHHHHHHHHHHHHHHhhC-CCCCcEEEeeccccccc---cccccHHHHHHHHHHhCCeEEEccccCCCCHHH
Confidence 99999999999999999988886654 36899999999999876 333444444444456788999999999999999
Q ss_pred HHHHHHhhhhc
Q 030233 169 GLDWLSNNISV 179 (181)
Q Consensus 169 l~~~i~~~~~~ 179 (181)
.|-.|++.+.+
T Consensus 165 aF~~La~~i~~ 175 (207)
T KOG0078|consen 165 AFLSLARDILQ 175 (207)
T ss_pred HHHHHHHHHHh
Confidence 99999988764
No 17
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=100.00 E-value=1.4e-34 Score=197.12 Aligned_cols=158 Identities=18% Similarity=0.296 Sum_probs=127.7
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEE--EEEEC--CeEEEEEEcCCChhhHHHHHhhccCCCEEE
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVE--AVEYK--NKSFCVWDVGGQNKIRALWRHYFRDTLGLT 89 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~--~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii 89 (181)
...+||+++|+.|+|||||+.+++.+.+. .+.++.+.... .+... ...+.+|||+|++.+..++..+++.+|+++
T Consensus 4 ~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~il 83 (189)
T cd04121 4 DYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGII 83 (189)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence 35689999999999999999999988764 34456555443 33343 378899999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhhCccccCCccEEEEEeeccCCCCHH
Q 030233 90 FVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV--MPTAEVADKLELYSLGQRRWSIQSCSAISGQGLY 167 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (181)
+|||++++++|+.+..|+..+.... ++.|+++|+||+|+... .+.++..... +..+++|++|||++|.|++
T Consensus 84 lVfD~t~~~Sf~~~~~w~~~i~~~~--~~~piilVGNK~DL~~~~~v~~~~~~~~a-----~~~~~~~~e~SAk~g~~V~ 156 (189)
T cd04121 84 LVYDITNRWSFDGIDRWIKEIDEHA--PGVPKILVGNRLHLAFKRQVATEQAQAYA-----ERNGMTFFEVSPLCNFNIT 156 (189)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECccchhccCCCHHHHHHHH-----HHcCCEEEEecCCCCCCHH
Confidence 9999999999999999999886543 58999999999998652 2333333322 2345689999999999999
Q ss_pred HHHHHHHhhhhc
Q 030233 168 EGLDWLSNNISV 179 (181)
Q Consensus 168 ~l~~~i~~~~~~ 179 (181)
++|+++.+.+..
T Consensus 157 ~~F~~l~~~i~~ 168 (189)
T cd04121 157 ESFTELARIVLM 168 (189)
T ss_pred HHHHHHHHHHHH
Confidence 999999987764
No 18
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=100.00 E-value=1.7e-34 Score=198.41 Aligned_cols=157 Identities=18% Similarity=0.301 Sum_probs=124.3
Q ss_pred cEEEEEcCCCCChHHHHHhhhcCCccc-ccCccceeEE--EEEECC--eEEEEEEcCCChhhHHHHHhhccCCCEEEEEE
Q 030233 18 IKLLMVGLDASGKTTILYKMKLGEIVT-TTPTIGFNVE--AVEYKN--KSFCVWDVGGQNKIRALWRHYFRDTLGLTFVV 92 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~~~~~~-~~~~~~~~~~--~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (181)
++|+++|+.|+|||||+++++.+.+.. +.+|++.... .+.+.+ ..+.+|||+|++.+..++..+++++|++|+||
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 478999999999999999999988754 5677765443 455544 78899999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHH
Q 030233 93 DSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVM--PTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGL 170 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 170 (181)
|+++++||+.+..|+..+... ...+.|+++|+||+|+.+.. ..++..+... ...++.|++|||++|+|++++|
T Consensus 81 Dvtd~~Sf~~l~~w~~~i~~~-~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~----~~~~~~~~etSAktg~gV~e~F 155 (202)
T cd04120 81 DITKKETFDDLPKWMKMIDKY-ASEDAELLLVGNKLDCETDREISRQQGEKFAQ----QITGMRFCEASAKDNFNVDEIF 155 (202)
T ss_pred ECcCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEECcccccccccCHHHHHHHHH----hcCCCEEEEecCCCCCCHHHHH
Confidence 999999999999988766433 33679999999999986422 2222211110 1124579999999999999999
Q ss_pred HHHHhhhhc
Q 030233 171 DWLSNNISV 179 (181)
Q Consensus 171 ~~i~~~~~~ 179 (181)
+++.+.+.+
T Consensus 156 ~~l~~~~~~ 164 (202)
T cd04120 156 LKLVDDILK 164 (202)
T ss_pred HHHHHHHHH
Confidence 999987754
No 19
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.5e-35 Score=189.88 Aligned_cols=161 Identities=22% Similarity=0.323 Sum_probs=138.1
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEEE--EEE--CCeEEEEEEcCCChhhHHHHHhhccCCCEEE
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVEA--VEY--KNKSFCVWDVGGQNKIRALWRHYFRDTLGLT 89 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~~--~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii 89 (181)
...+|+.++|+.|+|||+|+.+|+...|. .+..|+|+.... +.+ ..+++++|||+|++.+++.+..+|+.+.+++
T Consensus 4 ~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Gal 83 (216)
T KOG0098|consen 4 AYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGAL 83 (216)
T ss_pred cceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceE
Confidence 35689999999999999999999998864 466788866543 333 6789999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCCCHHHH
Q 030233 90 FVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEG 169 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 169 (181)
+|||+++++||..+..|++.+.++.. ++..+++++||+|+.. .+++.++.....+.+++..++++||++++|+++.
T Consensus 84 LVydit~r~sF~hL~~wL~D~rq~~~-~NmvImLiGNKsDL~~---rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEa 159 (216)
T KOG0098|consen 84 LVYDITRRESFNHLTSWLEDARQHSN-ENMVIMLIGNKSDLEA---RREVSKEEGEAFAREHGLIFMETSAKTAENVEEA 159 (216)
T ss_pred EEEEccchhhHHHHHHHHHHHHHhcC-CCcEEEEEcchhhhhc---cccccHHHHHHHHHHcCceeehhhhhhhhhHHHH
Confidence 99999999999999999999988743 6899999999999976 4455555555555678889999999999999999
Q ss_pred HHHHHhhhhc
Q 030233 170 LDWLSNNISV 179 (181)
Q Consensus 170 ~~~i~~~~~~ 179 (181)
|..+...+.+
T Consensus 160 F~nta~~Iy~ 169 (216)
T KOG0098|consen 160 FINTAKEIYR 169 (216)
T ss_pred HHHHHHHHHH
Confidence 9998887764
No 20
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=100.00 E-value=2.3e-33 Score=186.83 Aligned_cols=157 Identities=57% Similarity=1.010 Sum_probs=131.8
Q ss_pred EEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEECCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCCcc
Q 030233 19 KLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRE 98 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~ 98 (181)
||+++|++++|||||++++..+.+....+|.+.+...+...+..+.+|||||++.+...+..+++.+|++++|+|++++.
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~ 80 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRD 80 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcCcCCccCcCeEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEECCCHH
Confidence 58999999999999999998887777778888777777778899999999999999999999999999999999999988
Q ss_pred cHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHHHHHHh
Q 030233 99 RISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSN 175 (181)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~ 175 (181)
++.....++..+++.....+.|+++++||+|+.+.....++...+........+.+++++||++|.|++++|++|++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 157 (158)
T cd04151 81 RLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMDWLVN 157 (158)
T ss_pred HHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHHHHhc
Confidence 88877777776665544457999999999999765555666665543333344568999999999999999999975
No 21
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=4.4e-35 Score=185.98 Aligned_cols=162 Identities=22% Similarity=0.351 Sum_probs=138.5
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhcCCcccccCc-cceeEEE--EEE--CCeEEEEEEcCCChhhHHHHHhhccCCCEEE
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPT-IGFNVEA--VEY--KNKSFCVWDVGGQNKIRALWRHYFRDTLGLT 89 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~-~~~~~~~--~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii 89 (181)
...+||+++|.+|+|||||+.+|..+.+.+..|+ +|++.+. +++ ...++.||||+|+++|+.+.+.+|+.+.++|
T Consensus 9 ~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiI 88 (209)
T KOG0080|consen 9 DTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGII 88 (209)
T ss_pred ceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeE
Confidence 3469999999999999999999999998776655 7766554 333 5678999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCCCHHHH
Q 030233 90 FVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEG 169 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 169 (181)
+|||++.+++|.++..|+.++-..-..+++..++|+||+|..+ .+.+.+...+.++.....-|++|||++.+|++..
T Consensus 89 lVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes---~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~ 165 (209)
T KOG0080|consen 89 LVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKES---ERVVDREEGLKFARKHRCLFIECSAKTRENVQCC 165 (209)
T ss_pred EEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchh---cccccHHHHHHHHHhhCcEEEEcchhhhccHHHH
Confidence 9999999999999999998886555556788899999999653 5556666666666777888999999999999999
Q ss_pred HHHHHhhhhc
Q 030233 170 LDWLSNNISV 179 (181)
Q Consensus 170 ~~~i~~~~~~ 179 (181)
|+.+..++.+
T Consensus 166 FeelveKIi~ 175 (209)
T KOG0080|consen 166 FEELVEKIIE 175 (209)
T ss_pred HHHHHHHHhc
Confidence 9999998865
No 22
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=100.00 E-value=2.5e-33 Score=187.24 Aligned_cols=158 Identities=41% Similarity=0.761 Sum_probs=131.8
Q ss_pred EEEEEcCCCCChHHHHHhhhcCC--cccccCccceeEEEEEECCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCC
Q 030233 19 KLLMVGLDASGKTTILYKMKLGE--IVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSD 96 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~ 96 (181)
+|+++|++++|||||++++.+.. ...+.||.+.....+...+..+.+|||||++.+...+..+++.+|++++|+|+++
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~ 80 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVESFEKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSD 80 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEEEEECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEeCCc
Confidence 58999999999999999999875 3456788888777777788999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHHcCCC--CCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHHHHHH
Q 030233 97 RERISEARNELHQILSDNE--LSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLS 174 (181)
Q Consensus 97 ~~s~~~~~~~~~~~~~~~~--~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~ 174 (181)
+.++.....++..+++... ..++|+++|+||+|+.+....+++...+.........+.++++||++|+|++++|++|.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~~~~~l~ 160 (162)
T cd04157 81 RLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQLLGLENIKDKPWHIFASNALTGEGLDEGVQWLQ 160 (162)
T ss_pred HHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCHHHHHHHhCCccccCceEEEEEeeCCCCCchHHHHHHHh
Confidence 9999888888887766432 24799999999999977655666666554433233456799999999999999999987
Q ss_pred hh
Q 030233 175 NN 176 (181)
Q Consensus 175 ~~ 176 (181)
++
T Consensus 161 ~~ 162 (162)
T cd04157 161 AQ 162 (162)
T ss_pred cC
Confidence 53
No 23
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=100.00 E-value=3.7e-34 Score=198.72 Aligned_cols=160 Identities=18% Similarity=0.248 Sum_probs=128.6
Q ss_pred cEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEECCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCCc
Q 030233 18 IKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDR 97 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~ 97 (181)
+||+++|.+++|||||+++++++.+..+.+|.+.......+....+.+|||+|++.+..++..+++.+|++|+|||++++
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~~~~Tig~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~~ 80 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKDTVSTVGGAFYLKQWGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYDVSNV 80 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCCCCccceEEEEEEeeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEECCCH
Confidence 58999999999999999999999987778888877666666778899999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC---------------------CCHHHHHhhhCcc---------c
Q 030233 98 ERISEARNELHQILSDNELSNAALLVFANKQDLPNV---------------------MPTAEVADKLELY---------S 147 (181)
Q Consensus 98 ~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~---------------------~~~~~~~~~~~~~---------~ 147 (181)
++|..+..|+..+.+.. ..+.|+|+|+||+|+.+. .+.++........ .
T Consensus 81 ~Sf~~l~~~~~~l~~~~-~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~~~~ 159 (220)
T cd04126 81 QSLEELEDRFLGLTDTA-NEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDL 159 (220)
T ss_pred HHHHHHHHHHHHHHHhc-CCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccccccc
Confidence 99999999988876542 357899999999998641 1112211111000 0
Q ss_pred cCCccEEEEEeeccCCCCHHHHHHHHHhhhh
Q 030233 148 LGQRRWSIQSCSAISGQGLYEGLDWLSNNIS 178 (181)
Q Consensus 148 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~ 178 (181)
......+|++|||++|+||+++|+.+.+.+.
T Consensus 160 ~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~ 190 (220)
T cd04126 160 SPAAEKMCFETSAKTGYNVDELFEYLFNLVL 190 (220)
T ss_pred cccccceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 0112357999999999999999999998765
No 24
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=100.00 E-value=2e-34 Score=194.28 Aligned_cols=158 Identities=20% Similarity=0.212 Sum_probs=126.3
Q ss_pred ccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEE-EEEEC--CeEEEEEEcCCChhhHHHHHhhccCCCEEEEEE
Q 030233 17 RIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVE-AVEYK--NKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVV 92 (181)
Q Consensus 17 ~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~-~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (181)
.++|+++|++|+|||||++++.++.++ .+.+|.+.... .+... ...+.+|||||++.+..++..+++.+|++++||
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~ 81 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIICY 81 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEE
Confidence 579999999999999999999998875 45677764443 33443 467899999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHH
Q 030233 93 DSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVM--PTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGL 170 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 170 (181)
|+++++||..+..|+..+.+.....++|+++|+||+|+.+.. +.++.... +...+++|++|||++|.|++++|
T Consensus 82 d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~-----a~~~~~~~~e~Sa~~~~~v~~~f 156 (172)
T cd04141 82 SVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNL-----AREFNCPFFETSAALRHYIDDAF 156 (172)
T ss_pred ECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHH-----HHHhCCEEEEEecCCCCCHHHHH
Confidence 999999999999887666554333579999999999986532 22222211 12345689999999999999999
Q ss_pred HHHHhhhhc
Q 030233 171 DWLSNNISV 179 (181)
Q Consensus 171 ~~i~~~~~~ 179 (181)
+++.+.+.+
T Consensus 157 ~~l~~~~~~ 165 (172)
T cd04141 157 HGLVREIRR 165 (172)
T ss_pred HHHHHHHHH
Confidence 999987764
No 25
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=100.00 E-value=2.7e-34 Score=196.68 Aligned_cols=163 Identities=21% Similarity=0.222 Sum_probs=124.8
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhcCCc-ccccCccceeEEE-EEE--CCeEEEEEEcCCChhhHHHHHhhccCCCEEEE
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKLGEI-VTTTPTIGFNVEA-VEY--KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTF 90 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~-~~~~~~~~~~~~~-~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~ 90 (181)
|+.++|+++|++++|||||+.++..+.+ ..+.||.+..+.. +.. ....+.+|||+|++.+..+++.+++++|++|+
T Consensus 1 ~~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~il 80 (191)
T cd01875 1 MQSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFII 80 (191)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEE
Confidence 3568999999999999999999999887 4567887754432 223 44789999999999999999999999999999
Q ss_pred EEECCCcccHHHHHH-HHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH-HHHHhh--------hCccccCCcc-EEEEEee
Q 030233 91 VVDSSDRERISEARN-ELHQILSDNELSNAALLVFANKQDLPNVMPT-AEVADK--------LELYSLGQRR-WSIQSCS 159 (181)
Q Consensus 91 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~D~~~~~~~-~~~~~~--------~~~~~~~~~~-~~~~~~S 159 (181)
|||+++++||+.+.. |...+... .++.|+++|+||+|+.+.... +.+.+. .....+...+ ++|++||
T Consensus 81 vydit~~~Sf~~~~~~w~~~i~~~--~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~S 158 (191)
T cd01875 81 CFSIASPSSYENVRHKWHPEVCHH--CPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECS 158 (191)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeC
Confidence 999999999999974 66555433 257999999999999653221 111110 0011112223 5899999
Q ss_pred ccCCCCHHHHHHHHHhhhhc
Q 030233 160 AISGQGLYEGLDWLSNNISV 179 (181)
Q Consensus 160 a~~~~~i~~l~~~i~~~~~~ 179 (181)
|++|+|++++|+++.+.+..
T Consensus 159 Ak~g~~v~e~f~~l~~~~~~ 178 (191)
T cd01875 159 ALNQDGVKEVFAEAVRAVLN 178 (191)
T ss_pred CCCCCCHHHHHHHHHHHHhc
Confidence 99999999999999987754
No 26
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=100.00 E-value=6.9e-33 Score=186.03 Aligned_cols=157 Identities=38% Similarity=0.668 Sum_probs=136.1
Q ss_pred EEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEECCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCCcc
Q 030233 19 KLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRE 98 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~ 98 (181)
+|+++|++++|||||+++++++....+.||.+.+...+...+..+.+||+||++.++..+..+++.+|++++|+|+++++
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~~~~~~~t~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~~ 80 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEIPKKVAPTVGFTPTKLRLDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDDD 80 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCCccccCcccceEEEEEECCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEECCchh
Confidence 47999999999999999999875566788999888888889999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccC---CccEEEEEeeccCC------CCHHHH
Q 030233 99 RISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLG---QRRWSIQSCSAISG------QGLYEG 169 (181)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~Sa~~~------~~i~~l 169 (181)
++.....++..++......+.|+++|+||+|+.+..+..++.+.+...... ...+.+++|||++| .|+++.
T Consensus 81 s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~g~~~~ 160 (167)
T cd04161 81 RVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDPSIVEG 160 (167)
T ss_pred HHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCccccCHHHH
Confidence 999999999998876555689999999999998877777777766544331 23568899999998 899999
Q ss_pred HHHHHh
Q 030233 170 LDWLSN 175 (181)
Q Consensus 170 ~~~i~~ 175 (181)
|+||..
T Consensus 161 ~~wl~~ 166 (167)
T cd04161 161 LRWLLA 166 (167)
T ss_pred HHHHhc
Confidence 999975
No 27
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=100.00 E-value=9.9e-33 Score=189.02 Aligned_cols=164 Identities=37% Similarity=0.659 Sum_probs=140.8
Q ss_pred CCCccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEECCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEE
Q 030233 14 PQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVD 93 (181)
Q Consensus 14 ~~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (181)
..+..+|+++|++|+|||||++++.++.+..+.+|.+.+...+.+.+..+.+||+||++.+...+..+++.+|++++|+|
T Consensus 16 ~~~~~ki~ilG~~~~GKStLi~~l~~~~~~~~~~T~~~~~~~i~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV~D 95 (190)
T cd00879 16 YNKEAKILFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELTIGNIKFKTFDLGGHEQARRLWKDYFPEVDGIVFLVD 95 (190)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCccCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEE
Confidence 45689999999999999999999999887777788887777788888999999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCcccc-----------CCccEEEEEeeccC
Q 030233 94 SSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSL-----------GQRRWSIQSCSAIS 162 (181)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~Sa~~ 162 (181)
+++++++.....++..+++.....+.|+++++||+|+......+++......... ....+.+++|||++
T Consensus 96 ~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 175 (190)
T cd00879 96 AADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFMCSVVK 175 (190)
T ss_pred CCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHhCcccccccccccccccCceeEEEEEeEecC
Confidence 9999999988889988877655567999999999999876677777776654221 12456799999999
Q ss_pred CCCHHHHHHHHHhhh
Q 030233 163 GQGLYEGLDWLSNNI 177 (181)
Q Consensus 163 ~~~i~~l~~~i~~~~ 177 (181)
|+|++++|++|.+.+
T Consensus 176 ~~gv~e~~~~l~~~~ 190 (190)
T cd00879 176 RQGYGEAFRWLSQYL 190 (190)
T ss_pred CCChHHHHHHHHhhC
Confidence 999999999998753
No 28
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=100.00 E-value=7.5e-33 Score=184.34 Aligned_cols=157 Identities=64% Similarity=1.114 Sum_probs=139.5
Q ss_pred EEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEECCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCCcc
Q 030233 19 KLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRE 98 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~ 98 (181)
||+++|++|||||||++++++.......++.+.+...+.+....+.+||+||++.+...+..+++.+|++++|+|+++++
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~~ 80 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDRE 80 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcCcceEEEEECCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEECCCHH
Confidence 68999999999999999999998777888999888888888999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHHHHHHh
Q 030233 99 RISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSN 175 (181)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~ 175 (181)
++.....++..+.......+.|+++++||+|+......+++...+.........++++++||++|.|++++|++|..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~~ 157 (158)
T cd00878 81 RIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLDWLLQ 157 (158)
T ss_pred HHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHHHHhh
Confidence 99999999988877655578999999999999877667777776655434556779999999999999999999875
No 29
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=100.00 E-value=1.4e-32 Score=185.54 Aligned_cols=171 Identities=44% Similarity=0.779 Sum_probs=144.2
Q ss_pred HHHhhhhCCCCccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEECCeEEEEEEcCCChhhHHHHHhhccCC
Q 030233 6 SRLAKRFFPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDT 85 (181)
Q Consensus 6 ~~~~~~~~~~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~ 85 (181)
+-+.+...+.+.++|+++|++|+|||||++++.+..+....++.+++...+...+..+.+||+||+..+...+..+++.+
T Consensus 3 ~~~~~~~~~~~~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~~~i~~~~~~~~~~D~~G~~~~~~~~~~~~~~~ 82 (173)
T cd04155 3 SLLRKLRKSSEEPRILILGLDNAGKTTILKQLASEDISHITPTQGFNIKTVQSDGFKLNVWDIGGQRAIRPYWRNYFENT 82 (173)
T ss_pred hHHHHhhccCCccEEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhcCC
Confidence 33444445566899999999999999999999998877778888888888888889999999999999888899999999
Q ss_pred CEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCCC
Q 030233 86 LGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQG 165 (181)
Q Consensus 86 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (181)
|++++|+|+++..++.....++..++......++|+++++||+|+.+....+++.+.+.........++++++||++|+|
T Consensus 83 ~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~~~~g 162 (173)
T cd04155 83 DCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPAEEIAEALNLHDLRDRTWHIQACSAKTGEG 162 (173)
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCHHHHHHHcCCcccCCCeEEEEEeECCCCCC
Confidence 99999999999888888888887776654445799999999999987666777777766554455566789999999999
Q ss_pred HHHHHHHHHhh
Q 030233 166 LYEGLDWLSNN 176 (181)
Q Consensus 166 i~~l~~~i~~~ 176 (181)
++++|+||+++
T Consensus 163 i~~~~~~l~~~ 173 (173)
T cd04155 163 LQEGMNWVCKN 173 (173)
T ss_pred HHHHHHHHhcC
Confidence 99999999763
No 30
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=100.00 E-value=5.3e-34 Score=193.31 Aligned_cols=164 Identities=18% Similarity=0.199 Sum_probs=125.8
Q ss_pred CCCccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEE-EEEE--CCeEEEEEEcCCChhhHHHHHhhccCCCEEE
Q 030233 14 PQCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVE-AVEY--KNKSFCVWDVGGQNKIRALWRHYFRDTLGLT 89 (181)
Q Consensus 14 ~~~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~-~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii 89 (181)
+...+||+++|++++|||||+++++.+.+. .+.||.+.... .+.. ....+.+|||+|++.+..+++.+++++|+++
T Consensus 2 ~~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~i 81 (182)
T cd04172 2 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 81 (182)
T ss_pred CcceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEE
Confidence 345789999999999999999999998864 46777765443 2333 3468999999999999999999999999999
Q ss_pred EEEECCCcccHHHH-HHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC---------HHHHHhhhCccccCCcc-EEEEEe
Q 030233 90 FVVDSSDRERISEA-RNELHQILSDNELSNAALLVFANKQDLPNVMP---------TAEVADKLELYSLGQRR-WSIQSC 158 (181)
Q Consensus 90 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~---------~~~~~~~~~~~~~~~~~-~~~~~~ 158 (181)
+|||+++++||+.+ ..|+..+.... ++.|+++|+||+|+.+... ...+........+...+ .+|++|
T Consensus 82 lvyDit~~~Sf~~~~~~w~~~i~~~~--~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~ 159 (182)
T cd04172 82 ICFDISRPETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC 159 (182)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHC--CCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEEC
Confidence 99999999999997 67877775542 5799999999999854210 00111111111223344 489999
Q ss_pred eccCCCC-HHHHHHHHHhhhhc
Q 030233 159 SAISGQG-LYEGLDWLSNNISV 179 (181)
Q Consensus 159 Sa~~~~~-i~~l~~~i~~~~~~ 179 (181)
||++|+| |+++|+.+.+.+.+
T Consensus 160 SAk~~~n~v~~~F~~~~~~~~~ 181 (182)
T cd04172 160 SALQSENSVRDIFHVATLACVN 181 (182)
T ss_pred CcCCCCCCHHHHHHHHHHHHhc
Confidence 9999998 99999999886554
No 31
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=100.00 E-value=1.3e-34 Score=187.80 Aligned_cols=164 Identities=16% Similarity=0.256 Sum_probs=131.3
Q ss_pred CccEEEEEcCCCCChHHHHHhhhcCCc-ccccCccceeEEE--EEE--CCeEEEEEEcCCChhhHHHHHhhccCCCEEEE
Q 030233 16 CRIKLLMVGLDASGKTTILYKMKLGEI-VTTTPTIGFNVEA--VEY--KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTF 90 (181)
Q Consensus 16 ~~~~i~~~G~~~~GKssl~~~~~~~~~-~~~~~~~~~~~~~--~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~ 90 (181)
.-+||.++|++|+|||||+|++.+.++ ..+..|+|....+ +.+ ....++||||+|+++|+++.-.+++++|++++
T Consensus 8 ~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCvl 87 (210)
T KOG0394|consen 8 TLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCVL 87 (210)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceEEE
Confidence 458999999999999999999999986 4567888865444 333 44689999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHcCCC---CCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCCCHH
Q 030233 91 VVDSSDRERISEARNELHQILSDNE---LSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLY 167 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (181)
|||+++++||..+..|..+++.+.. +...|.|++|||+|+....+...-.+....-.....+++|||+||+...|++
T Consensus 88 vydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~NV~ 167 (210)
T KOG0394|consen 88 VYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEATNVD 167 (210)
T ss_pred EeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEecccccccHH
Confidence 9999999999999999999987643 3457999999999986633211111111111124568899999999999999
Q ss_pred HHHHHHHhhhhc
Q 030233 168 EGLDWLSNNISV 179 (181)
Q Consensus 168 ~l~~~i~~~~~~ 179 (181)
+.|+.+.+.+..
T Consensus 168 ~AFe~ia~~aL~ 179 (210)
T KOG0394|consen 168 EAFEEIARRALA 179 (210)
T ss_pred HHHHHHHHHHHh
Confidence 999999887654
No 32
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=100.00 E-value=8.4e-33 Score=184.43 Aligned_cols=157 Identities=45% Similarity=0.868 Sum_probs=132.4
Q ss_pred EEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEE-CCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCCc
Q 030233 19 KLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEY-KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDR 97 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~ 97 (181)
+|+++|++|+|||||++++.++.+....||.+.+...+.. ....+.+||+||++.+...+..++..+|++++|+|++++
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~ 80 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTTIPTVGFNVEMLQLEKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDE 80 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccccCccCcceEEEEeCCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCcH
Confidence 5899999999999999999999887778888877666655 457899999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCcccc-CCccEEEEEeeccCCCCHHHHHHHHHh
Q 030233 98 ERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSL-GQRRWSIQSCSAISGQGLYEGLDWLSN 175 (181)
Q Consensus 98 ~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~~i~~l~~~i~~ 175 (181)
.++.....++..+++.....+.|+++|+||+|+......+++...+..... ...++++++|||++|+|++++|++|.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~i~~ 159 (160)
T cd04156 81 ARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRKLAS 159 (160)
T ss_pred HHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHHHHHhc
Confidence 999999998888876644468999999999999765566777665543222 235678999999999999999999865
No 33
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=100.00 E-value=1.2e-32 Score=187.44 Aligned_cols=164 Identities=48% Similarity=0.783 Sum_probs=133.3
Q ss_pred CccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEE-----CCeEEEEEEcCCChhhHHHHHhhccCCCEEEE
Q 030233 16 CRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEY-----KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTF 90 (181)
Q Consensus 16 ~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~ 90 (181)
+.++|+++|++|||||||+++++.+.+....||.+++...... ....+.+|||||++.+...+..+++.+|++++
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 81 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVF 81 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcCCcCCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEE
Confidence 4689999999999999999999988877667777766554443 45789999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCcccc-CCccEEEEEeeccCCCCHHHH
Q 030233 91 VVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSL-GQRRWSIQSCSAISGQGLYEG 169 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~~i~~l 169 (181)
|+|+++++++.....++..+.......+.|+++|+||+|+.+....+++......... ....++++++||++|+|++++
T Consensus 82 v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l 161 (183)
T cd04152 82 VVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQEG 161 (183)
T ss_pred EEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCCHHHHHHHhCccccCCCCceEEEEeecccCCCHHHH
Confidence 9999999899888888877766544457999999999999765555665554443222 223467899999999999999
Q ss_pred HHHHHhhhhc
Q 030233 170 LDWLSNNISV 179 (181)
Q Consensus 170 ~~~i~~~~~~ 179 (181)
+++|.+.+.+
T Consensus 162 ~~~l~~~l~~ 171 (183)
T cd04152 162 LEKLYEMILK 171 (183)
T ss_pred HHHHHHHHHH
Confidence 9999988743
No 34
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=100.00 E-value=2.9e-33 Score=187.76 Aligned_cols=157 Identities=22% Similarity=0.339 Sum_probs=125.8
Q ss_pred ccEEEEEcCCCCChHHHHHhhhcCCccc-ccCccceeEE--EEEEC--CeEEEEEEcCCChhhHHHHHhhccCCCEEEEE
Q 030233 17 RIKLLMVGLDASGKTTILYKMKLGEIVT-TTPTIGFNVE--AVEYK--NKSFCVWDVGGQNKIRALWRHYFRDTLGLTFV 91 (181)
Q Consensus 17 ~~~i~~~G~~~~GKssl~~~~~~~~~~~-~~~~~~~~~~--~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v 91 (181)
.+||+++|++|+|||||+++++++.+.. +.+|.+.+.. .+... ...+.+|||||++.+...+..+++++|++++|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 81 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 81 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 4799999999999999999999888644 4556665543 23343 46789999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhhCccccCCccEEEEEeeccCCCCHHHH
Q 030233 92 VDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVM--PTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEG 169 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 169 (181)
||++++++|+.+..|+..+.... .++.|+++|+||+|+.... ..++..... ...+++++++||++|+|++++
T Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~~~~i~e~ 155 (166)
T cd04122 82 YDITRRSTYNHLSSWLTDARNLT-NPNTVIFLIGNKADLEAQRDVTYEEAKQFA-----DENGLLFLECSAKTGENVEDA 155 (166)
T ss_pred EECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccCcCHHHHHHHH-----HHcCCEEEEEECCCCCCHHHH
Confidence 99999999999999998875542 2578999999999986532 233333322 223568999999999999999
Q ss_pred HHHHHhhhhc
Q 030233 170 LDWLSNNISV 179 (181)
Q Consensus 170 ~~~i~~~~~~ 179 (181)
|.++++.+.+
T Consensus 156 f~~l~~~~~~ 165 (166)
T cd04122 156 FLETAKKIYQ 165 (166)
T ss_pred HHHHHHHHhh
Confidence 9999988754
No 35
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=100.00 E-value=5.6e-33 Score=187.27 Aligned_cols=155 Identities=20% Similarity=0.213 Sum_probs=124.0
Q ss_pred cEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEE-EEEE--CCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEE
Q 030233 18 IKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVE-AVEY--KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVD 93 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~-~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (181)
+|++++|++++|||||+.+++.+.+. .+.||.+.... .+.. ....+.+|||+|++++..++..++++++++|+|||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd 81 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 81 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEEE
Confidence 58999999999999999999999875 56788875443 2333 44789999999999999999999999999999999
Q ss_pred CCCcccHHHH-HHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC------------CHHHHHhhhCccccCCccE-EEEEee
Q 030233 94 SSDRERISEA-RNELHQILSDNELSNAALLVFANKQDLPNVM------------PTAEVADKLELYSLGQRRW-SIQSCS 159 (181)
Q Consensus 94 ~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~D~~~~~------------~~~~~~~~~~~~~~~~~~~-~~~~~S 159 (181)
+++++||+.+ ..|+..+.... ++.|+++|+||+|+.+.. ..++.... +...+. .|+|||
T Consensus 82 ~~~~~Sf~~~~~~w~~~i~~~~--~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~-----a~~~~~~~~~E~S 154 (176)
T cd04133 82 LISRASYENVLKKWVPELRHYA--PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEEL-----RKQIGAAAYIECS 154 (176)
T ss_pred cCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHH-----HHHcCCCEEEECC
Confidence 9999999998 57888775443 479999999999995431 22222221 122333 699999
Q ss_pred ccCCCCHHHHHHHHHhhhhc
Q 030233 160 AISGQGLYEGLDWLSNNISV 179 (181)
Q Consensus 160 a~~~~~i~~l~~~i~~~~~~ 179 (181)
|++|.||+++|+.+.+.+.+
T Consensus 155 Ak~~~nV~~~F~~~~~~~~~ 174 (176)
T cd04133 155 SKTQQNVKAVFDAAIKVVLQ 174 (176)
T ss_pred CCcccCHHHHHHHHHHHHhc
Confidence 99999999999999987654
No 36
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=100.00 E-value=3.6e-33 Score=189.66 Aligned_cols=160 Identities=23% Similarity=0.404 Sum_probs=127.5
Q ss_pred CccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEEE--EEE------------CCeEEEEEEcCCChhhHHHHHh
Q 030233 16 CRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVEA--VEY------------KNKSFCVWDVGGQNKIRALWRH 80 (181)
Q Consensus 16 ~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~~--~~~------------~~~~~~i~d~~g~~~~~~~~~~ 80 (181)
+.+||+++|++|||||||++++.++.+. .+.+|.+.+... +.+ ....+.+||+||++.+...+..
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 82 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTA 82 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHH
Confidence 4689999999999999999999988754 456666654432 222 2378999999999999999999
Q ss_pred hccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhhCccccCCccEEEEEe
Q 030233 81 YFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV--MPTAEVADKLELYSLGQRRWSIQSC 158 (181)
Q Consensus 81 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (181)
+++++|++++|||+++++++..+..|+..+.......+.|+++|+||+|+.+. .+.++..... ...+.+++++
T Consensus 83 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~e~ 157 (180)
T cd04127 83 FFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALA-----DKYGIPYFET 157 (180)
T ss_pred HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHH-----HHcCCeEEEE
Confidence 99999999999999999999999999988866544457899999999998653 2223332222 2234579999
Q ss_pred eccCCCCHHHHHHHHHhhhhcc
Q 030233 159 SAISGQGLYEGLDWLSNNISVK 180 (181)
Q Consensus 159 Sa~~~~~i~~l~~~i~~~~~~~ 180 (181)
||++|.|++++|+++.+.+.++
T Consensus 158 Sak~~~~v~~l~~~l~~~~~~~ 179 (180)
T cd04127 158 SAATGTNVEKAVERLLDLVMKR 179 (180)
T ss_pred eCCCCCCHHHHHHHHHHHHHhh
Confidence 9999999999999999877653
No 37
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.7e-34 Score=177.81 Aligned_cols=158 Identities=22% Similarity=0.373 Sum_probs=131.1
Q ss_pred ccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEEEEEE----CCeEEEEEEcCCChhhHHHHHhhccCCCEEEEE
Q 030233 17 RIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVEAVEY----KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFV 91 (181)
Q Consensus 17 ~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~~~~~----~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v 91 (181)
.+|++++|++.+|||||+.++++.++. ....|.|+..+...+ ..+++++|||+|++.++.+...++++++++|++
T Consensus 21 mfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfiLm 100 (193)
T KOG0093|consen 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILM 100 (193)
T ss_pred eeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEEEE
Confidence 469999999999999999999999964 467788877665443 558999999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhhCccccCCccEEEEEeeccCCCCHHHH
Q 030233 92 VDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV--MPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEG 169 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 169 (181)
||++|.+||..+..|...+- .....+.|+|+|+||||+..+ .+.+.... .+...+..|||+||+.|.|++.+
T Consensus 101 yDitNeeSf~svqdw~tqIk-tysw~naqvilvgnKCDmd~eRvis~e~g~~-----l~~~LGfefFEtSaK~NinVk~~ 174 (193)
T KOG0093|consen 101 YDITNEESFNSVQDWITQIK-TYSWDNAQVILVGNKCDMDSERVISHERGRQ-----LADQLGFEFFETSAKENINVKQV 174 (193)
T ss_pred EecCCHHHHHHHHHHHHHhe-eeeccCceEEEEecccCCccceeeeHHHHHH-----HHHHhChHHhhhcccccccHHHH
Confidence 99999999999999998874 445578999999999998763 22232222 22334557999999999999999
Q ss_pred HHHHHhhhhcc
Q 030233 170 LDWLSNNISVK 180 (181)
Q Consensus 170 ~~~i~~~~~~~ 180 (181)
|+.+...+.++
T Consensus 175 Fe~lv~~Ic~k 185 (193)
T KOG0093|consen 175 FERLVDIICDK 185 (193)
T ss_pred HHHHHHHHHHH
Confidence 99998887654
No 38
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=100.00 E-value=2.2e-32 Score=183.05 Aligned_cols=155 Identities=37% Similarity=0.626 Sum_probs=131.5
Q ss_pred EEEEEcCCCCChHHHHHhhhcCCc-ccccCccceeEEEEEECCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCCc
Q 030233 19 KLLMVGLDASGKTTILYKMKLGEI-VTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDR 97 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~ 97 (181)
.|+++|++|+|||||+++++++.+ ..+.||.+.....+...+..+.+||+||++.++..+..+++.+|++++|+|.+++
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~ 80 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNSVAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSADS 80 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcceEEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCH
Confidence 379999999999999999998864 4567888887766777889999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCcccc-CCccEEEEEeeccC------CCCHHHHH
Q 030233 98 ERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSL-GQRRWSIQSCSAIS------GQGLYEGL 170 (181)
Q Consensus 98 ~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~------~~~i~~l~ 170 (181)
.++.....|+..+.... +++|+++|+||+|+......+++......... ...++.++++||++ ++|++++|
T Consensus 81 ~s~~~~~~~l~~~~~~~--~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~~~~ 158 (164)
T cd04162 81 ERLPLARQELHQLLQHP--PDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVKDLL 158 (164)
T ss_pred HHHHHHHHHHHHHHhCC--CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHHHHH
Confidence 99999999888886543 58999999999999876666666655543333 45678899999888 99999999
Q ss_pred HHHHh
Q 030233 171 DWLSN 175 (181)
Q Consensus 171 ~~i~~ 175 (181)
+.+.+
T Consensus 159 ~~~~~ 163 (164)
T cd04162 159 SQLIN 163 (164)
T ss_pred HHHhc
Confidence 98864
No 39
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3e-32 Score=169.35 Aligned_cols=179 Identities=59% Similarity=1.025 Sum_probs=170.8
Q ss_pred CcchHHHHhhhhCCCCccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEECCeEEEEEEcCCChhhHHHHHh
Q 030233 1 MGKLISRLAKRFFPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRH 80 (181)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~ 80 (181)
||..++++..+.+-.++++|+++|-.++||||++..++-+......||.|++...+.+.+..+.+||++|+...+..|..
T Consensus 1 Mgn~~sk~~~k~f~~KE~~ilmlGLd~aGKTtiLyKLkl~~~~~~ipTvGFnvetVtykN~kfNvwdvGGqd~iRplWrh 80 (180)
T KOG0071|consen 1 MGNYMSKLLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRH 80 (180)
T ss_pred CcchHHHHHHHHhCcccceEEEEecccCCceehhhHHhcCCCcccccccceeEEEEEeeeeEEeeeeccCchhhhHHHHh
Confidence 78888888888888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeec
Q 030233 81 YFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSA 160 (181)
Q Consensus 81 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (181)
++....++|+|+|..+.+.+++.+..+..+++++...+.|+++.+||-|++...+++++.+.+++..+..+.+.+.++||
T Consensus 81 Yy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leLe~~r~~~W~vqp~~a 160 (180)
T KOG0071|consen 81 YYTGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLELERIRDRNWYVQPSCA 160 (180)
T ss_pred hccCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhccccccCCccEeecccc
Confidence 99999999999999999999999999999999988889999999999999999999999999999888889999999999
Q ss_pred cCCCCHHHHHHHHHhhhhc
Q 030233 161 ISGQGLYEGLDWLSNNISV 179 (181)
Q Consensus 161 ~~~~~i~~l~~~i~~~~~~ 179 (181)
.+|.|+.+-|.|+.+.+..
T Consensus 161 ~~gdgL~eglswlsnn~~~ 179 (180)
T KOG0071|consen 161 LSGDGLKEGLSWLSNNLKE 179 (180)
T ss_pred ccchhHHHHHHHHHhhccC
Confidence 9999999999999988764
No 40
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=100.00 E-value=1.7e-32 Score=184.00 Aligned_cols=155 Identities=23% Similarity=0.348 Sum_probs=126.1
Q ss_pred cEEEEEcCCCCChHHHHHhhhcCCc-ccccCccceeEEEEEE----CCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEE
Q 030233 18 IKLLMVGLDASGKTTILYKMKLGEI-VTTTPTIGFNVEAVEY----KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVV 92 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~~~~-~~~~~~~~~~~~~~~~----~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (181)
+||+++|++|||||||+++++.+.+ ..+.+|.+.......+ ....+.+|||+|++.+...+..++..+|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 5899999999999999999998775 4567777766655443 4578999999999998888889999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHHHH
Q 030233 93 DSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDW 172 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 172 (181)
|++++++++.+..|+..+.... .+.|+++|+||+|+.+......... . ......+++++||++|+|++++|++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~--~~~piiiv~nK~Dl~~~~~~~~~~~-~----~~~~~~~~~e~Sa~~~~~v~~~f~~ 153 (166)
T cd00877 81 DVTSRVTYKNVPNWHRDLVRVC--GNIPIVLCGNKVDIKDRKVKAKQIT-F----HRKKNLQYYEISAKSNYNFEKPFLW 153 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC--CCCcEEEEEEchhcccccCCHHHHH-H----HHHcCCEEEEEeCCCCCChHHHHHH
Confidence 9999999999999988886653 3899999999999864332222211 1 1234567999999999999999999
Q ss_pred HHhhhhc
Q 030233 173 LSNNISV 179 (181)
Q Consensus 173 i~~~~~~ 179 (181)
|.+.+.+
T Consensus 154 l~~~~~~ 160 (166)
T cd00877 154 LARKLLG 160 (166)
T ss_pred HHHHHHh
Confidence 9988865
No 41
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=100.00 E-value=1.4e-32 Score=186.72 Aligned_cols=159 Identities=18% Similarity=0.294 Sum_probs=124.3
Q ss_pred cEEEEEcCCCCChHHHHHhhhcCCccc-ccCccceeEE--EEEEC--CeEEEEEEcCCChhhHHHHHhhccCCCEEEEEE
Q 030233 18 IKLLMVGLDASGKTTILYKMKLGEIVT-TTPTIGFNVE--AVEYK--NKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVV 92 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~~~~~~-~~~~~~~~~~--~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (181)
+||+++|++|+|||||+++++++.+.. +.||.+.+.. .+... ...+.+||++|++.+...+..+++++|++++||
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 589999999999999999999988654 7788886653 34444 368999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC---HHHHHhhhCccccCCccEEEEEeeccCCCCHHHH
Q 030233 93 DSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMP---TAEVADKLELYSLGQRRWSIQSCSAISGQGLYEG 169 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 169 (181)
|++++++++.+..|+..+.+... ...| ++|+||+|+.+... .+.+.+ .....+...+++++++||++|+|++++
T Consensus 81 D~t~~~s~~~i~~~~~~~~~~~~-~~~p-ilVgnK~Dl~~~~~~~~~~~~~~-~~~~~a~~~~~~~~e~SAk~g~~v~~l 157 (182)
T cd04128 81 DLTRKSTLNSIKEWYRQARGFNK-TAIP-ILVGTKYDLFADLPPEEQEEITK-QARKYAKAMKAPLIFCSTSHSINVQKI 157 (182)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCC-CCCE-EEEEEchhccccccchhhhhhHH-HHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 99999999999999988866422 3566 68899999864221 111111 111111233468999999999999999
Q ss_pred HHHHHhhhhc
Q 030233 170 LDWLSNNISV 179 (181)
Q Consensus 170 ~~~i~~~~~~ 179 (181)
|+++.+.+.+
T Consensus 158 f~~l~~~l~~ 167 (182)
T cd04128 158 FKIVLAKAFD 167 (182)
T ss_pred HHHHHHHHHh
Confidence 9999987754
No 42
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=3.7e-33 Score=188.84 Aligned_cols=160 Identities=20% Similarity=0.198 Sum_probs=121.8
Q ss_pred ccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEE-EEEE--CCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEE
Q 030233 17 RIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVE-AVEY--KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVV 92 (181)
Q Consensus 17 ~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~-~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (181)
++||+++|++|+|||||+++++++.++ .+.||.+.... .+.. ....+.+|||+|++.+..+.+.+++++|++++||
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvf 80 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICF 80 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEE
Confidence 478999999999999999999998865 45677765433 2333 4467899999999999999999999999999999
Q ss_pred ECCCcccHHHH-HHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC---------HHHHHhhhCccccCCccE-EEEEeecc
Q 030233 93 DSSDRERISEA-RNELHQILSDNELSNAALLVFANKQDLPNVMP---------TAEVADKLELYSLGQRRW-SIQSCSAI 161 (181)
Q Consensus 93 d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~---------~~~~~~~~~~~~~~~~~~-~~~~~Sa~ 161 (181)
|+++++||+.+ ..|+..+.+.. ++.|+++|+||+|+.+... ...+........+...+. .|++|||+
T Consensus 81 dit~~~Sf~~~~~~w~~~i~~~~--~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~ 158 (178)
T cd04131 81 DISRPETLDSVLKKWRGEIQEFC--PNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAF 158 (178)
T ss_pred ECCChhhHHHHHHHHHHHHHHHC--CCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccC
Confidence 99999999996 67877775542 5799999999999854210 000111111111233443 79999999
Q ss_pred CCCC-HHHHHHHHHhhhh
Q 030233 162 SGQG-LYEGLDWLSNNIS 178 (181)
Q Consensus 162 ~~~~-i~~l~~~i~~~~~ 178 (181)
+|+| ++++|..+.+...
T Consensus 159 ~~~~~v~~~F~~~~~~~~ 176 (178)
T cd04131 159 TSEKSVRDIFHVATMACL 176 (178)
T ss_pred cCCcCHHHHHHHHHHHHh
Confidence 9995 9999999988654
No 43
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=4.4e-32 Score=187.30 Aligned_cols=158 Identities=23% Similarity=0.314 Sum_probs=126.4
Q ss_pred cEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEE--EEEEC---CeEEEEEEcCCChhhHHHHHhhccCCCEEEEE
Q 030233 18 IKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVE--AVEYK---NKSFCVWDVGGQNKIRALWRHYFRDTLGLTFV 91 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~--~~~~~---~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v 91 (181)
+||+++|++|+|||||+++++++.+. .+.+|.+.+.. .+... ...+.+|||||++.+..++..+++.++++++|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 58999999999999999999998754 45677775543 34443 56789999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHcC---CCCCCCeEEEEEeCCCCC--CCCCHHHHHhhhCccccCCccEEEEEeeccCCCCH
Q 030233 92 VDSSDRERISEARNELHQILSD---NELSNAALLVFANKQDLP--NVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGL 166 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~---~~~~~~piilv~nK~D~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 166 (181)
||++++++|+.+..|+..+... ....++|+++|+||+|+. +....+++....... ....++++||++|+|+
T Consensus 81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~e~Sak~~~~v 156 (201)
T cd04107 81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKEN----GFIGWFETSAKEGINI 156 (201)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHc----CCceEEEEeCCCCCCH
Confidence 9999999999999888776542 123578999999999996 334444444433211 1247999999999999
Q ss_pred HHHHHHHHhhhhc
Q 030233 167 YEGLDWLSNNISV 179 (181)
Q Consensus 167 ~~l~~~i~~~~~~ 179 (181)
+++|+++.+.+.+
T Consensus 157 ~e~f~~l~~~l~~ 169 (201)
T cd04107 157 EEAMRFLVKNILA 169 (201)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988754
No 44
>PTZ00369 Ras-like protein; Provisional
Probab=100.00 E-value=4.7e-33 Score=190.37 Aligned_cols=160 Identities=21% Similarity=0.225 Sum_probs=127.2
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEE-EEEE--CCeEEEEEEcCCChhhHHHHHhhccCCCEEEE
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVE-AVEY--KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTF 90 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~-~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~ 90 (181)
+..++|+++|++|+|||||+++++++.+. .+.+|.+.... .+.. ....+.+|||||++++..++..+++.+|++++
T Consensus 3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil 82 (189)
T PTZ00369 3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC 82 (189)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence 45799999999999999999999988764 55677665443 2233 34578899999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhhCccccCCccEEEEEeeccCCCCHHH
Q 030233 91 VVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVM--PTAEVADKLELYSLGQRRWSIQSCSAISGQGLYE 168 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (181)
|||++++++|+.+..|+..+.+.....+.|+++|+||+|+.+.. ...+..... ...+++++++||++|.|+++
T Consensus 83 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~-----~~~~~~~~e~Sak~~~gi~~ 157 (189)
T PTZ00369 83 VYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELA-----KSFGIPFLETSAKQRVNVDE 157 (189)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHH-----HHhCCEEEEeeCCCCCCHHH
Confidence 99999999999999999888765444689999999999986532 222222211 12235799999999999999
Q ss_pred HHHHHHhhhhc
Q 030233 169 GLDWLSNNISV 179 (181)
Q Consensus 169 l~~~i~~~~~~ 179 (181)
+|+++.+.+.+
T Consensus 158 ~~~~l~~~l~~ 168 (189)
T PTZ00369 158 AFYELVREIRK 168 (189)
T ss_pred HHHHHHHHHHH
Confidence 99999887654
No 45
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=100.00 E-value=6.1e-33 Score=187.51 Aligned_cols=158 Identities=19% Similarity=0.198 Sum_probs=120.8
Q ss_pred cEEEEEcCCCCChHHHHHhhhcCCc-ccccCccceeEE-EEEECC--eEEEEEEcCCChhhHHHHHhhccCCCEEEEEEE
Q 030233 18 IKLLMVGLDASGKTTILYKMKLGEI-VTTTPTIGFNVE-AVEYKN--KSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVD 93 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~~~~-~~~~~~~~~~~~-~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (181)
+||+++|++|+|||||+++++++.+ ..+.||.+.... .+...+ ..+.+|||+|++++...+..+++.+|++++|||
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d 81 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFS 81 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEEE
Confidence 6899999999999999999999887 467788775544 344444 678899999999999999999999999999999
Q ss_pred CCCcccHHHHHH-HHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHH-H--------HhhhCccccCC-ccEEEEEeeccC
Q 030233 94 SSDRERISEARN-ELHQILSDNELSNAALLVFANKQDLPNVMPTAE-V--------ADKLELYSLGQ-RRWSIQSCSAIS 162 (181)
Q Consensus 94 ~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~-~--------~~~~~~~~~~~-~~~~~~~~Sa~~ 162 (181)
++++++|+.+.. |+..+... . ++.|+++|+||+|+.+.....+ + ........+.. ..+.|++|||++
T Consensus 82 ~~~~~s~~~~~~~w~~~i~~~-~-~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~t 159 (175)
T cd01874 82 VVSPSSFENVKEKWVPEITHH-C-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALT 159 (175)
T ss_pred CCCHHHHHHHHHHHHHHHHHh-C-CCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCC
Confidence 999999999975 66655443 2 5799999999999865321110 0 00000001111 236899999999
Q ss_pred CCCHHHHHHHHHhhh
Q 030233 163 GQGLYEGLDWLSNNI 177 (181)
Q Consensus 163 ~~~i~~l~~~i~~~~ 177 (181)
|+|++++|+.+++.+
T Consensus 160 g~~v~~~f~~~~~~~ 174 (175)
T cd01874 160 QKGLKNVFDEAILAA 174 (175)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999998754
No 46
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=100.00 E-value=2.6e-32 Score=190.35 Aligned_cols=157 Identities=22% Similarity=0.315 Sum_probs=129.3
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEEEEEE----CCeEEEEEEcCCChhhHHHHHhhccCCCEEE
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVEAVEY----KNKSFCVWDVGGQNKIRALWRHYFRDTLGLT 89 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~~~~~----~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii 89 (181)
+..+||+++|++|||||||+++++.+.+. .+.+|.+.+.....+ ....+.+|||+|++.+..++..+++.++++|
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 90 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence 56789999999999999999999888764 567888876655433 4479999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC-CHHHHHhhhCccccCCccEEEEEeeccCCCCHHH
Q 030233 90 FVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVM-PTAEVADKLELYSLGQRRWSIQSCSAISGQGLYE 168 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (181)
+|||+++++++..+..|+..+.+.. .+.|+++|+||+|+.+.. ..+++ .. ....++.|++|||++|.|+++
T Consensus 91 lvfD~~~~~s~~~i~~w~~~i~~~~--~~~piilvgNK~Dl~~~~v~~~~~-~~-----~~~~~~~~~e~SAk~~~~i~~ 162 (219)
T PLN03071 91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQV-TF-----HRKKNLQYYEISAKSNYNFEK 162 (219)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhC--CCCcEEEEEEchhhhhccCCHHHH-HH-----HHhcCCEEEEcCCCCCCCHHH
Confidence 9999999999999999998886542 579999999999986432 22222 11 123456899999999999999
Q ss_pred HHHHHHhhhhc
Q 030233 169 GLDWLSNNISV 179 (181)
Q Consensus 169 l~~~i~~~~~~ 179 (181)
+|++|.+.+.+
T Consensus 163 ~f~~l~~~~~~ 173 (219)
T PLN03071 163 PFLYLARKLAG 173 (219)
T ss_pred HHHHHHHHHHc
Confidence 99999988754
No 47
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=100.00 E-value=8.5e-32 Score=180.77 Aligned_cols=157 Identities=36% Similarity=0.733 Sum_probs=131.2
Q ss_pred EEEEEcCCCCChHHHHHhhhcCC-------cccccCccceeEEEEEECCeEEEEEEcCCChhhHHHHHhhccCCCEEEEE
Q 030233 19 KLLMVGLDASGKTTILYKMKLGE-------IVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFV 91 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v 91 (181)
+|+++|++|+|||||++++.+.. ...+.+|.+.+...+.+.+..+.+|||||++.+...+..++..+|++++|
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~v 80 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQESLRSLWDKYYAECHAIIYV 80 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEE
Confidence 58999999999999999997643 22446777777777888899999999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccc--cCCccEEEEEeeccCCCCHHHH
Q 030233 92 VDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYS--LGQRRWSIQSCSAISGQGLYEG 169 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Sa~~~~~i~~l 169 (181)
+|+++++++.....++..+++.....+.|+++++||+|+.+....+++...+.... .....++++++||++|+|++++
T Consensus 81 vd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~ 160 (167)
T cd04160 81 IDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEVFQDKAEEIGRRDCLVLPVSALEGTGVREG 160 (167)
T ss_pred EECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCCHHHHHHHhccccccccCCceEEEEeeCCCCcCHHHH
Confidence 99999889999888888887765556899999999999987666666655544322 2335678999999999999999
Q ss_pred HHHHHh
Q 030233 170 LDWLSN 175 (181)
Q Consensus 170 ~~~i~~ 175 (181)
+++|.+
T Consensus 161 ~~~l~~ 166 (167)
T cd04160 161 IEWLVE 166 (167)
T ss_pred HHHHhc
Confidence 999975
No 48
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=9.4e-33 Score=192.74 Aligned_cols=162 Identities=21% Similarity=0.213 Sum_probs=124.0
Q ss_pred CccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEEE-EEE--CCeEEEEEEcCCChhhHHHHHhhccCCCEEEEE
Q 030233 16 CRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVEA-VEY--KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFV 91 (181)
Q Consensus 16 ~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~~-~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v 91 (181)
..++|+++|++|||||||+++++++.+. .+.||.+..+.. +.. ....+.+|||+|++.|..+++.+++++|++++|
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIlV 91 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLC 91 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEEE
Confidence 4689999999999999999999998865 456777655432 233 457899999999999999999999999999999
Q ss_pred EECCCcccHHHH-HHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC---------HHHHHhhhCccccCCccE-EEEEeec
Q 030233 92 VDSSDRERISEA-RNELHQILSDNELSNAALLVFANKQDLPNVMP---------TAEVADKLELYSLGQRRW-SIQSCSA 160 (181)
Q Consensus 92 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~---------~~~~~~~~~~~~~~~~~~-~~~~~Sa 160 (181)
||++++++|+.+ ..|+..+.... ++.|+++|+||+|+..... ...+........+...++ .|++|||
T Consensus 92 yDit~~~Sf~~~~~~w~~~i~~~~--~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtSA 169 (232)
T cd04174 92 FDISRPETVDSALKKWKAEIMDYC--PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECSA 169 (232)
T ss_pred EECCChHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEccC
Confidence 999999999985 67887776542 4789999999999854210 011111111112233444 6999999
Q ss_pred cCCC-CHHHHHHHHHhhhhc
Q 030233 161 ISGQ-GLYEGLDWLSNNISV 179 (181)
Q Consensus 161 ~~~~-~i~~l~~~i~~~~~~ 179 (181)
++|+ |++++|+.++..+.+
T Consensus 170 ktg~~~V~e~F~~~~~~~~~ 189 (232)
T cd04174 170 FTSEKSIHSIFRSASLLCLN 189 (232)
T ss_pred CcCCcCHHHHHHHHHHHHHH
Confidence 9998 899999999887654
No 49
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=100.00 E-value=9.7e-33 Score=184.88 Aligned_cols=157 Identities=20% Similarity=0.276 Sum_probs=124.9
Q ss_pred ccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEE-EEEEC--CeEEEEEEcCCChhhHHHHHhhccCCCEEEEEE
Q 030233 17 RIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVE-AVEYK--NKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVV 92 (181)
Q Consensus 17 ~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~-~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (181)
++||+++|.+|+|||||+++++.+.+. .+.+|.+.... .+... ...+.+|||||++.+...+..+++.+|++++||
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVY 80 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEE
Confidence 478999999999999999999987754 35566654332 34443 457789999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HHHHHhhhCccccCCccEEEEEeeccCCCCHHHHH
Q 030233 93 DSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMP--TAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGL 170 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 170 (181)
|++++++++....|+..+.......+.|+++++||+|+.+... .++... +. ...+++++++||++|.|++++|
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~-~~----~~~~~~~~~~Sa~~~~~v~~~~ 155 (164)
T cd04175 81 SITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQN-LA----RQWGCAFLETSAKAKINVNEIF 155 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHH-HH----HHhCCEEEEeeCCCCCCHHHHH
Confidence 9999999999999998887655556899999999999965322 222211 11 1233579999999999999999
Q ss_pred HHHHhhhh
Q 030233 171 DWLSNNIS 178 (181)
Q Consensus 171 ~~i~~~~~ 178 (181)
+++.+++.
T Consensus 156 ~~l~~~l~ 163 (164)
T cd04175 156 YDLVRQIN 163 (164)
T ss_pred HHHHHHhh
Confidence 99998764
No 50
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=100.00 E-value=3e-32 Score=183.38 Aligned_cols=157 Identities=25% Similarity=0.335 Sum_probs=124.5
Q ss_pred EEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEEE--EEEC--CeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEE
Q 030233 19 KLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVEA--VEYK--NKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVD 93 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~~--~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (181)
||+++|++|||||||+++++++.+. .+.||.+..... +... ...+.+|||||++++...+..+++.+|++++|||
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 7999999999999999999998864 567887765542 3333 4679999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH---HHHHhhhCccccCCccEEEEEeeccCCCCHHHHH
Q 030233 94 SSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPT---AEVADKLELYSLGQRRWSIQSCSAISGQGLYEGL 170 (181)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 170 (181)
+++++++.....|+..+++.......|+++|+||+|+.+.... ++...... ...+.+++++||++|.|++++|
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~----~~~~~~~~e~Sa~~g~~v~~lf 157 (170)
T cd04108 82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLA----AEMQAEYWSVSALSGENVREFF 157 (170)
T ss_pred CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHH----HHcCCeEEEEECCCCCCHHHHH
Confidence 9999999999999988876544446789999999998543221 11111111 1223479999999999999999
Q ss_pred HHHHhhhhc
Q 030233 171 DWLSNNISV 179 (181)
Q Consensus 171 ~~i~~~~~~ 179 (181)
+.+.+.+.+
T Consensus 158 ~~l~~~~~~ 166 (170)
T cd04108 158 FRVAALTFE 166 (170)
T ss_pred HHHHHHHHH
Confidence 999887653
No 51
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=100.00 E-value=1e-31 Score=180.33 Aligned_cols=156 Identities=25% Similarity=0.378 Sum_probs=124.7
Q ss_pred cEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEE--EEEE--CCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEE
Q 030233 18 IKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVE--AVEY--KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVV 92 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~--~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (181)
+||+++|++|+|||||+++++++.+. .+.++.+.+.. .+.. ....+.+|||||++.+...+..+++.+|++|+|+
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 58999999999999999999998854 45677765543 3333 4578899999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHcCCC----CCCCeEEEEEeCCCCCCC--CCHHHHHhhhCccccCCccEEEEEeeccCCCCH
Q 030233 93 DSSDRERISEARNELHQILSDNE----LSNAALLVFANKQDLPNV--MPTAEVADKLELYSLGQRRWSIQSCSAISGQGL 166 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~----~~~~piilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 166 (181)
|++++++++....|+..+..... ..+.|+++|+||+|+.+. .+.++..... ...+.+++++||++|+|+
T Consensus 81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi 155 (168)
T cd04119 81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWA-----ESKGFKYFETSACTGEGV 155 (168)
T ss_pred ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHH-----HHcCCeEEEEECCCCCCH
Confidence 99999999999999888866433 256999999999998632 2333332222 123357999999999999
Q ss_pred HHHHHHHHhhhh
Q 030233 167 YEGLDWLSNNIS 178 (181)
Q Consensus 167 ~~l~~~i~~~~~ 178 (181)
+++|++|.+.+.
T Consensus 156 ~~l~~~l~~~l~ 167 (168)
T cd04119 156 NEMFQTLFSSIV 167 (168)
T ss_pred HHHHHHHHHHHh
Confidence 999999998764
No 52
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=100.00 E-value=2.3e-32 Score=183.63 Aligned_cols=159 Identities=22% Similarity=0.368 Sum_probs=127.3
Q ss_pred CccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEE--EEEEC--CeEEEEEEcCCChhhHHHHHhhccCCCEEEE
Q 030233 16 CRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVE--AVEYK--NKSFCVWDVGGQNKIRALWRHYFRDTLGLTF 90 (181)
Q Consensus 16 ~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~--~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~ 90 (181)
..+||+++|++|+|||||++++.++.+. .+.++.+.... .+... ...+.+||+||++.+...+..+++.+|++++
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~ 81 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEE
Confidence 4689999999999999999999998854 45677765543 33343 3578999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhhCccccCCccEEEEEeeccCCCCHHH
Q 030233 91 VVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVM--PTAEVADKLELYSLGQRRWSIQSCSAISGQGLYE 168 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (181)
|||++++++|+.+..|+..+... ...+.|+++|+||+|+.+.. ..++..... ...+.+++++||++|.|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~ 155 (167)
T cd01867 82 VYDITDEKSFENIRNWMRNIEEH-ASEDVERMLVGNKCDMEEKRVVSKEEGEALA-----DEYGIKFLETSAKANINVEE 155 (167)
T ss_pred EEECcCHHHHHhHHHHHHHHHHh-CCCCCcEEEEEECcccccccCCCHHHHHHHH-----HHcCCEEEEEeCCCCCCHHH
Confidence 99999999999999988887654 23579999999999997532 233333222 22345799999999999999
Q ss_pred HHHHHHhhhhcc
Q 030233 169 GLDWLSNNISVK 180 (181)
Q Consensus 169 l~~~i~~~~~~~ 180 (181)
+|+++.+.+.++
T Consensus 156 ~~~~i~~~~~~~ 167 (167)
T cd01867 156 AFFTLAKDIKKK 167 (167)
T ss_pred HHHHHHHHHHhC
Confidence 999999987653
No 53
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=100.00 E-value=2.3e-32 Score=183.27 Aligned_cols=156 Identities=22% Similarity=0.363 Sum_probs=124.6
Q ss_pred cEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEEE--EEE--CCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEE
Q 030233 18 IKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVEA--VEY--KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVV 92 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~~--~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (181)
+||+++|++|+|||||++++.++.+. .+.+|.+.+... +.. ....+.+||+||++++...+..+++.+|++++||
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 68999999999999999999998864 456777654433 322 3468999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HHHHHhhhCccccCCccEEEEEeeccCCCCHHHHH
Q 030233 93 DSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMP--TAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGL 170 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 170 (181)
|++++++++.+..|+..+.... ....|+++|+||+|+.+... .++..... ...+++++++||++|.|++++|
T Consensus 82 d~~~~~s~~~~~~~~~~i~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gv~~l~ 155 (165)
T cd01865 82 DITNEESFNAVQDWSTQIKTYS-WDNAQVILVGNKCDMEDERVVSSERGRQLA-----DQLGFEFFEASAKENINVKQVF 155 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC-CCCCCEEEEEECcccCcccccCHHHHHHHH-----HHcCCEEEEEECCCCCCHHHHH
Confidence 9999999999999988875442 34789999999999865322 22222221 1233479999999999999999
Q ss_pred HHHHhhhhc
Q 030233 171 DWLSNNISV 179 (181)
Q Consensus 171 ~~i~~~~~~ 179 (181)
+++.+.+.+
T Consensus 156 ~~l~~~~~~ 164 (165)
T cd01865 156 ERLVDIICD 164 (165)
T ss_pred HHHHHHHHh
Confidence 999987754
No 54
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=100.00 E-value=2.4e-32 Score=182.43 Aligned_cols=154 Identities=21% Similarity=0.346 Sum_probs=122.4
Q ss_pred cEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEE--EEEEC--CeEEEEEEcCCChhhHHHHHhhccCCCEEEEEE
Q 030233 18 IKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVE--AVEYK--NKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVV 92 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~--~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (181)
++|+++|++|+|||||++++.++.+. .+.+|.+.+.. .+... ...+.+||++|++.+...+..+++.+|++++||
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 58999999999999999999998864 45777776544 34444 367899999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH-HHHHhhhCccccCCccEEEEEeeccCCCCHHHHHH
Q 030233 93 DSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPT-AEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLD 171 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 171 (181)
|++++++|+.+..|+..+.... ..+.|+++|+||+|+...... .+....+. +..+.+|++|||++|.|++++|+
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~-~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~----~~~~~~~~e~Sa~~~~~v~~~f~ 155 (161)
T cd04117 81 DISSERSYQHIMKWVSDVDEYA-PEGVQKILIGNKADEEQKRQVGDEQGNKLA----KEYGMDFFETSACTNSNIKESFT 155 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccCCCHHHHHHHH----HHcCCEEEEEeCCCCCCHHHHHH
Confidence 9999999999999988876542 247999999999998653321 11222221 22335799999999999999999
Q ss_pred HHHhh
Q 030233 172 WLSNN 176 (181)
Q Consensus 172 ~i~~~ 176 (181)
+|.+.
T Consensus 156 ~l~~~ 160 (161)
T cd04117 156 RLTEL 160 (161)
T ss_pred HHHhh
Confidence 99865
No 55
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=100.00 E-value=1.3e-32 Score=183.99 Aligned_cols=156 Identities=21% Similarity=0.259 Sum_probs=122.4
Q ss_pred ccEEEEEcCCCCChHHHHHhhhcCCcc-cccCcccee-EEEEEECC--eEEEEEEcCCChhhHHHHHhhccCCCEEEEEE
Q 030233 17 RIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFN-VEAVEYKN--KSFCVWDVGGQNKIRALWRHYFRDTLGLTFVV 92 (181)
Q Consensus 17 ~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~-~~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (181)
.++|+++|++|+|||||+++++++.+. .+.+|.+.. ...+...+ ..+.+|||||++.+...+..+++.+|++++||
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (163)
T cd04136 1 EYKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence 379999999999999999999988754 345565522 23344443 56789999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HHHHHhhhCccccCCccEEEEEeeccCCCCHHHHH
Q 030233 93 DSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMP--TAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGL 170 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 170 (181)
|++++++++....|+..+.......+.|+++|+||+|+.+... .++..... ...+.+++++||++|.|++++|
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~l~ 155 (163)
T cd04136 81 SITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALA-----RQWGCPFYETSAKSKINVDEVF 155 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHH-----HHcCCeEEEecCCCCCCHHHHH
Confidence 9999999999999988887654446899999999999865322 22221111 1223589999999999999999
Q ss_pred HHHHhhh
Q 030233 171 DWLSNNI 177 (181)
Q Consensus 171 ~~i~~~~ 177 (181)
+++.+.+
T Consensus 156 ~~l~~~~ 162 (163)
T cd04136 156 ADLVRQI 162 (163)
T ss_pred HHHHHhc
Confidence 9998765
No 56
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=2.5e-32 Score=189.44 Aligned_cols=158 Identities=22% Similarity=0.428 Sum_probs=126.7
Q ss_pred ccEEEEEcCCCCChHHHHHhhhcCCccc-ccCccceeEEE--EEE---CCeEEEEEEcCCChhhHHHHHhhccCCCEEEE
Q 030233 17 RIKLLMVGLDASGKTTILYKMKLGEIVT-TTPTIGFNVEA--VEY---KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTF 90 (181)
Q Consensus 17 ~~~i~~~G~~~~GKssl~~~~~~~~~~~-~~~~~~~~~~~--~~~---~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~ 90 (181)
++||+++|++|+|||||+++++++.+.. +.+|.+.+... +.. ....+.+|||+|++.+...+..+++.+|++++
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 81 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL 81 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence 5899999999999999999999988644 45676655433 333 24689999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhhCccccCCccEEEEEeeccCCCCHHH
Q 030233 91 VVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVM--PTAEVADKLELYSLGQRRWSIQSCSAISGQGLYE 168 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (181)
|||++++++|+.+..|+..+........+|+++|+||+|+.+.. ..++..... ...+++++++||++|+|+++
T Consensus 82 v~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~e~Sak~g~~v~e 156 (211)
T cd04111 82 VFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLA-----KDLGMKYIETSARTGDNVEE 156 (211)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHH-----HHhCCEEEEEeCCCCCCHHH
Confidence 99999999999999999988765444568899999999986532 222222221 22346899999999999999
Q ss_pred HHHHHHhhhhc
Q 030233 169 GLDWLSNNISV 179 (181)
Q Consensus 169 l~~~i~~~~~~ 179 (181)
+|++|.+.+.+
T Consensus 157 ~f~~l~~~~~~ 167 (211)
T cd04111 157 AFELLTQEIYE 167 (211)
T ss_pred HHHHHHHHHHH
Confidence 99999987764
No 57
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=100.00 E-value=8.4e-32 Score=179.76 Aligned_cols=156 Identities=22% Similarity=0.265 Sum_probs=122.9
Q ss_pred ccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEE-EEEECC--eEEEEEEcCCChhhHHHHHhhccCCCEEEEEE
Q 030233 17 RIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVE-AVEYKN--KSFCVWDVGGQNKIRALWRHYFRDTLGLTFVV 92 (181)
Q Consensus 17 ~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~-~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (181)
++||+++|++|+|||||+++++++.+. .+.+|.+.... .+...+ ..+.+|||||++.+..++..+++.++++++||
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~ 80 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF 80 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEE
Confidence 368999999999999999999988753 45566554332 233333 56889999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC-CHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHHH
Q 030233 93 DSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVM-PTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLD 171 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 171 (181)
|+++++++.....|+..+.+.....+.|+++|+||+|+.+.. ...+..... ...+.+++++||++|.|++++|+
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l~~ 155 (162)
T cd04138 81 AINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDLA-----KSYGIPYIETSAKTRQGVEEAFY 155 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHHHH-----HHhCCeEEEecCCCCCCHHHHHH
Confidence 999999999998888888765444689999999999986532 222222221 12344799999999999999999
Q ss_pred HHHhhh
Q 030233 172 WLSNNI 177 (181)
Q Consensus 172 ~i~~~~ 177 (181)
++.+.+
T Consensus 156 ~l~~~~ 161 (162)
T cd04138 156 TLVREI 161 (162)
T ss_pred HHHHHh
Confidence 998765
No 58
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=100.00 E-value=1.6e-32 Score=187.95 Aligned_cols=157 Identities=21% Similarity=0.233 Sum_probs=122.4
Q ss_pred EEEEEcCCCCChHHHHHhhhcCCccc-ccCccceeEE-EEEECC--eEEEEEEcCCChhhHHHHHhhccCCCEEEEEEEC
Q 030233 19 KLLMVGLDASGKTTILYKMKLGEIVT-TTPTIGFNVE-AVEYKN--KSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDS 94 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~~~~~~-~~~~~~~~~~-~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~ 94 (181)
+|+++|.+|+|||||+++++.+.+.. +.+|.+.... .+...+ ..+.+|||||++.+..++..+++.+|++++|||+
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~ 80 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSI 80 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEEC
Confidence 58999999999999999999887644 5566654332 233333 5689999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHHcCCC--CCCCeEEEEEeCCCCCCCCC--HHHHHhhhCccccCCccEEEEEeeccCCCCHHHHH
Q 030233 95 SDRERISEARNELHQILSDNE--LSNAALLVFANKQDLPNVMP--TAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGL 170 (181)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~--~~~~piilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 170 (181)
+++++++.+..|+..+..... ..+.|+++|+||+|+..... ..+.... ....+++++++||++|.|++++|
T Consensus 81 ~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~-----~~~~~~~~~e~SAk~~~~v~~l~ 155 (190)
T cd04144 81 TSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAAL-----ARRLGCEFIEASAKTNVNVERAF 155 (190)
T ss_pred CCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHH-----HHHhCCEEEEecCCCCCCHHHHH
Confidence 999999999999888765432 25789999999999864222 2222111 12234579999999999999999
Q ss_pred HHHHhhhhcc
Q 030233 171 DWLSNNISVK 180 (181)
Q Consensus 171 ~~i~~~~~~~ 180 (181)
+++.+.+.++
T Consensus 156 ~~l~~~l~~~ 165 (190)
T cd04144 156 YTLVRALRQQ 165 (190)
T ss_pred HHHHHHHHHh
Confidence 9999887643
No 59
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=100.00 E-value=5e-32 Score=181.77 Aligned_cols=157 Identities=22% Similarity=0.360 Sum_probs=124.9
Q ss_pred ccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEE--EEEEC--CeEEEEEEcCCChhhHHHHHhhccCCCEEEEE
Q 030233 17 RIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVE--AVEYK--NKSFCVWDVGGQNKIRALWRHYFRDTLGLTFV 91 (181)
Q Consensus 17 ~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~--~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v 91 (181)
.+||+++|++|+|||||+++++++.+. .+.+|.+.+.. .+... ...+.+||+||++.+...+..+++.+|++++|
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v 81 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 81 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence 479999999999999999999988754 44566664433 33333 45789999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HHHHHhhhCccccCCccEEEEEeeccCCCCHHHH
Q 030233 92 VDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMP--TAEVADKLELYSLGQRRWSIQSCSAISGQGLYEG 169 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 169 (181)
||+++++++..+..|+..+.... .++.|+++++||+|+..... .++..... ...+++++++||++|+|++++
T Consensus 82 ~d~~~~~s~~~l~~~~~~~~~~~-~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~~ 155 (166)
T cd01869 82 YDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTDKRVVDYSEAQEFA-----DELGIPFLETSAKNATNVEQA 155 (166)
T ss_pred EECcCHHHHHhHHHHHHHHHHhC-CCCCcEEEEEEChhcccccCCCHHHHHHHH-----HHcCCeEEEEECCCCcCHHHH
Confidence 99999999999999988875542 25789999999999865322 23222222 223458999999999999999
Q ss_pred HHHHHhhhhc
Q 030233 170 LDWLSNNISV 179 (181)
Q Consensus 170 ~~~i~~~~~~ 179 (181)
|+++.+.+.+
T Consensus 156 ~~~i~~~~~~ 165 (166)
T cd01869 156 FMTMAREIKK 165 (166)
T ss_pred HHHHHHHHHh
Confidence 9999998764
No 60
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-32 Score=182.76 Aligned_cols=160 Identities=21% Similarity=0.356 Sum_probs=133.5
Q ss_pred CccEEEEEcCCCCChHHHHHhhhcCCc-ccccCccceeEEEEE--E--CCeEEEEEEcCCChhhHHHHHhhccCCCEEEE
Q 030233 16 CRIKLLMVGLDASGKTTILYKMKLGEI-VTTTPTIGFNVEAVE--Y--KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTF 90 (181)
Q Consensus 16 ~~~~i~~~G~~~~GKssl~~~~~~~~~-~~~~~~~~~~~~~~~--~--~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~ 90 (181)
+-+||+++|++++|||=|+.|+..+.| .+..+|+|+...+.. + ..++.+||||+|+++|++....+|+.+.+.++
T Consensus 13 ylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGAll 92 (222)
T KOG0087|consen 13 YLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGALL 92 (222)
T ss_pred eEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccceeEE
Confidence 468999999999999999999999996 556788887766533 3 56789999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHH
Q 030233 91 VVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGL 170 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 170 (181)
|||+++..+|+.+..|+.+++.+.+ +++++++|+||+||.. .+.+........+...+..++++||.++.|+++.|
T Consensus 93 VYDITr~~Tfenv~rWL~ELRdhad-~nivimLvGNK~DL~~---lraV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~aF 168 (222)
T KOG0087|consen 93 VYDITRRQTFENVERWLKELRDHAD-SNIVIMLVGNKSDLNH---LRAVPTEDGKAFAEKEGLFFLETSALDATNVEKAF 168 (222)
T ss_pred EEechhHHHHHHHHHHHHHHHhcCC-CCeEEEEeecchhhhh---ccccchhhhHhHHHhcCceEEEecccccccHHHHH
Confidence 9999999999999999999988765 6899999999999965 22222222222234456689999999999999999
Q ss_pred HHHHhhhhc
Q 030233 171 DWLSNNISV 179 (181)
Q Consensus 171 ~~i~~~~~~ 179 (181)
+.+...+.+
T Consensus 169 ~~~l~~I~~ 177 (222)
T KOG0087|consen 169 ERVLTEIYK 177 (222)
T ss_pred HHHHHHHHH
Confidence 988877654
No 61
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=100.00 E-value=6.7e-32 Score=188.07 Aligned_cols=157 Identities=18% Similarity=0.228 Sum_probs=124.2
Q ss_pred cEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEE--EEEEC---CeEEEEEEcCCChhhHHHHHhhccCCCEEEEE
Q 030233 18 IKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVE--AVEYK---NKSFCVWDVGGQNKIRALWRHYFRDTLGLTFV 91 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~--~~~~~---~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v 91 (181)
+||+++|++|+|||||+++++++.+. .+.+|.+.+.. .+... ...+.+|||+|++.+...+..+++.+|++++|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 58999999999999999999988864 45677775543 34442 47899999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHcCCC--CCCCeEEEEEeCCCCCCCC--CHHHHHhhhCccccCCccEEEEEeeccCCCCHH
Q 030233 92 VDSSDRERISEARNELHQILSDNE--LSNAALLVFANKQDLPNVM--PTAEVADKLELYSLGQRRWSIQSCSAISGQGLY 167 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (181)
||++++++|+.+..|+..+.+... ..++|+++|+||+|+.+.. ..++..... ...+++++++||++|+|++
T Consensus 81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~-----~~~~~~~~~iSAktg~gv~ 155 (215)
T cd04109 81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFA-----QANGMESCLVSAKTGDRVN 155 (215)
T ss_pred EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHH-----HHcCCEEEEEECCCCCCHH
Confidence 999999999999988888765432 2457899999999986422 222222211 1233579999999999999
Q ss_pred HHHHHHHhhhhc
Q 030233 168 EGLDWLSNNISV 179 (181)
Q Consensus 168 ~l~~~i~~~~~~ 179 (181)
++|+++.+.+..
T Consensus 156 ~lf~~l~~~l~~ 167 (215)
T cd04109 156 LLFQQLAAELLG 167 (215)
T ss_pred HHHHHHHHHHHh
Confidence 999999988754
No 62
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=100.00 E-value=4e-32 Score=181.86 Aligned_cols=157 Identities=24% Similarity=0.295 Sum_probs=123.0
Q ss_pred cEEEEEcCCCCChHHHHHhhhcCCccc-ccCccceeE-EEEEE--CCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEE
Q 030233 18 IKLLMVGLDASGKTTILYKMKLGEIVT-TTPTIGFNV-EAVEY--KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVD 93 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~~~~~~-~~~~~~~~~-~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (181)
+||+++|++|+|||||+++++++.+.. +.++.+... ..... ....+.+|||||++++...+..+++.+|++++|||
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 80 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYS 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEE
Confidence 489999999999999999999887543 344444222 22333 34678899999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHHH
Q 030233 94 SSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVM--PTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLD 171 (181)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 171 (181)
++++++++....|+..+.+.....+.|+++|+||+|+.... ..+...... ...+.+++++||++|.|++++|+
T Consensus 81 ~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~l~~ 155 (164)
T smart00173 81 ITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELA-----RQWGCPFLETSAKERVNVDEAFY 155 (164)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHH-----HHcCCEEEEeecCCCCCHHHHHH
Confidence 99999999999988887665444578999999999986532 222222222 12235899999999999999999
Q ss_pred HHHhhhhc
Q 030233 172 WLSNNISV 179 (181)
Q Consensus 172 ~i~~~~~~ 179 (181)
++.+.+.+
T Consensus 156 ~l~~~~~~ 163 (164)
T smart00173 156 DLVREIRK 163 (164)
T ss_pred HHHHHHhh
Confidence 99988764
No 63
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=100.00 E-value=1.6e-31 Score=185.74 Aligned_cols=162 Identities=19% Similarity=0.209 Sum_probs=121.8
Q ss_pred ccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEE-EEEE--CCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEE
Q 030233 17 RIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVE-AVEY--KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVV 92 (181)
Q Consensus 17 ~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~-~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (181)
++||+++|++|+|||||++++.++.++ .+.||.+..+. .+.+ ....+.+|||+|++.|..+++.+++.+|++++||
T Consensus 1 ~~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvf 80 (222)
T cd04173 1 RCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICF 80 (222)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEE
Confidence 378999999999999999999998865 46788775543 2333 4567899999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH-HH--------HHhhhCccccCCcc-EEEEEeeccC
Q 030233 93 DSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPT-AE--------VADKLELYSLGQRR-WSIQSCSAIS 162 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~-~~--------~~~~~~~~~~~~~~-~~~~~~Sa~~ 162 (181)
|++++++|+.+..+|...+... .++.|+++|+||+|+...... .. +........+...+ ..|+||||++
T Consensus 81 dis~~~Sf~~i~~~w~~~~~~~-~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~ 159 (222)
T cd04173 81 DISRPETLDSVLKKWQGETQEF-CPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRS 159 (222)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCc
Confidence 9999999999965554433332 267999999999998653110 00 11111111112233 4899999999
Q ss_pred CCC-HHHHHHHHHhhhhc
Q 030233 163 GQG-LYEGLDWLSNNISV 179 (181)
Q Consensus 163 ~~~-i~~l~~~i~~~~~~ 179 (181)
+++ |+++|+.+......
T Consensus 160 ~~~~V~~~F~~~~~~~~~ 177 (222)
T cd04173 160 SERSVRDVFHVATVASLG 177 (222)
T ss_pred CCcCHHHHHHHHHHHHHh
Confidence 985 99999998886544
No 64
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=100.00 E-value=3.2e-32 Score=182.19 Aligned_cols=157 Identities=17% Similarity=0.269 Sum_probs=122.1
Q ss_pred ccEEEEEcCCCCChHHHHHhhhcCCccc-ccCccc-eeEEEEEEC--CeEEEEEEcCCChhhHHHHHhhccCCCEEEEEE
Q 030233 17 RIKLLMVGLDASGKTTILYKMKLGEIVT-TTPTIG-FNVEAVEYK--NKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVV 92 (181)
Q Consensus 17 ~~~i~~~G~~~~GKssl~~~~~~~~~~~-~~~~~~-~~~~~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (181)
+++|+++|++|+|||||+++++.+.+.. +.+|.+ .....+... ...+.+|||||++.+..++..+++++|++++||
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~ 80 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVY 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEE
Confidence 4799999999999999999999988644 445544 222233333 356889999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHH-HHhhhCccccCCccEEEEEeeccCCCCHHHHHH
Q 030233 93 DSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAE-VADKLELYSLGQRRWSIQSCSAISGQGLYEGLD 171 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 171 (181)
|++++++++.+..|+..+.+.....+.|+++|+||+|+.+...... ....+. ...+.+++++||++|.|++++|+
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~~v~~l~~ 156 (163)
T cd04176 81 SLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALA----EEWGCPFMETSAKSKTMVNELFA 156 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHH----HHhCCEEEEecCCCCCCHHHHHH
Confidence 9999999999999988887654446899999999999854322111 111111 11235799999999999999999
Q ss_pred HHHhhh
Q 030233 172 WLSNNI 177 (181)
Q Consensus 172 ~i~~~~ 177 (181)
++.+.+
T Consensus 157 ~l~~~l 162 (163)
T cd04176 157 EIVRQM 162 (163)
T ss_pred HHHHhc
Confidence 998765
No 65
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=100.00 E-value=4e-32 Score=181.81 Aligned_cols=156 Identities=22% Similarity=0.254 Sum_probs=122.5
Q ss_pred ccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEE-EEEEC--CeEEEEEEcCCChhhHHHHHhhccCCCEEEEEE
Q 030233 17 RIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVE-AVEYK--NKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVV 92 (181)
Q Consensus 17 ~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~-~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (181)
.+||+++|++|+|||||+++++++.+. .+.++.+.... ..... ...+.+|||||++++...+..+++.+|++++|+
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 81 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLVF 81 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEEE
Confidence 579999999999999999999988753 34455543222 23333 357889999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHH
Q 030233 93 DSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVM--PTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGL 170 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 170 (181)
|++++++++....|+..+.+.....+.|+++++||+|+.... ..++..... ...+.+++++||++|.|++++|
T Consensus 82 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~l~ 156 (164)
T cd04145 82 SVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELA-----RKLKIPYIETSAKDRLNVDKAF 156 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHH-----HHcCCcEEEeeCCCCCCHHHHH
Confidence 999999999999999888765444679999999999986532 222222211 1234579999999999999999
Q ss_pred HHHHhhh
Q 030233 171 DWLSNNI 177 (181)
Q Consensus 171 ~~i~~~~ 177 (181)
+++.+.+
T Consensus 157 ~~l~~~~ 163 (164)
T cd04145 157 HDLVRVI 163 (164)
T ss_pred HHHHHhh
Confidence 9998765
No 66
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=1.1e-31 Score=183.61 Aligned_cols=157 Identities=24% Similarity=0.324 Sum_probs=125.1
Q ss_pred cEEEEEcCCCCChHHHHHhhhcCCccc-ccCccceeEE--EEEE--CCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEE
Q 030233 18 IKLLMVGLDASGKTTILYKMKLGEIVT-TTPTIGFNVE--AVEY--KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVV 92 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~~~~~~-~~~~~~~~~~--~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (181)
++|+++|++|+|||||++++.++.+.. +.+|.+.+.. .+.. ....+.+||+||.+.+...+..+++.+|++++||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 589999999999999999999988765 6777775543 3333 3467899999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHH
Q 030233 93 DSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVM--PTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGL 170 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 170 (181)
|+++++++..+..|+..+.... ....|+++++||+|+.+.. +.+...... ...+++++++||++|.|++++|
T Consensus 81 d~~~~~s~~~i~~~~~~i~~~~-~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~evSa~~~~~i~~~f 154 (188)
T cd04125 81 DVTDQESFENLKFWINEINRYA-RENVIKVIVANKSDLVNNKVVDSNIAKSFC-----DSLNIPFFETSAKQSINVEEAF 154 (188)
T ss_pred ECcCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECCCCcccccCCHHHHHHHH-----HHcCCeEEEEeCCCCCCHHHHH
Confidence 9999999999999988876542 2468999999999987432 222222211 1234479999999999999999
Q ss_pred HHHHhhhhcc
Q 030233 171 DWLSNNISVK 180 (181)
Q Consensus 171 ~~i~~~~~~~ 180 (181)
+++.+.+.++
T Consensus 155 ~~l~~~~~~~ 164 (188)
T cd04125 155 ILLVKLIIKR 164 (188)
T ss_pred HHHHHHHHHH
Confidence 9999887653
No 67
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=100.00 E-value=6.5e-32 Score=181.07 Aligned_cols=154 Identities=16% Similarity=0.207 Sum_probs=119.4
Q ss_pred cEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEEE-EEE--CCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEE
Q 030233 18 IKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVEA-VEY--KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVD 93 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~~-~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (181)
++|+++|++|+|||||+++++++.+. .+.++.+..... +.. ....+.+|||||++.+...+..+++.++++++|||
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d 81 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYS 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEE
Confidence 68999999999999999999998864 445666544332 222 44678999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHcCC--CCCCCeEEEEEeCCCCCCCCC--HHHHHhhhCccccCCccEEEEEeeccCCCCHHHH
Q 030233 94 SSDRERISEARNELHQILSDN--ELSNAALLVFANKQDLPNVMP--TAEVADKLELYSLGQRRWSIQSCSAISGQGLYEG 169 (181)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~--~~~~~piilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 169 (181)
+++++++..+..|+..+.+.. ..++.|+++|+||+|+.+... .++... . ....+..+++|||++|+|++++
T Consensus 82 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~-~----~~~~~~~~~e~SA~~g~~v~~~ 156 (165)
T cd04140 82 VTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAA-C----ATEWNCAFMETSAKTNHNVQEL 156 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHH-H----HHHhCCcEEEeecCCCCCHHHH
Confidence 999999999998887664432 235799999999999865222 222111 1 1223457999999999999999
Q ss_pred HHHHHhh
Q 030233 170 LDWLSNN 176 (181)
Q Consensus 170 ~~~i~~~ 176 (181)
|++|.+.
T Consensus 157 f~~l~~~ 163 (165)
T cd04140 157 FQELLNL 163 (165)
T ss_pred HHHHHhc
Confidence 9999864
No 68
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=9.1e-33 Score=173.21 Aligned_cols=157 Identities=21% Similarity=0.332 Sum_probs=128.9
Q ss_pred cEEEEEcCCCCChHHHHHhhhcCCccc-ccCccceeEEE--EEE--CCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEE
Q 030233 18 IKLLMVGLDASGKTTILYKMKLGEIVT-TTPTIGFNVEA--VEY--KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVV 92 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~~~~~~-~~~~~~~~~~~--~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (181)
++.+++|++|+|||+|+.+|....|.. +..|+|++... +.+ ...+++||||+|++.|+.+...+++..+++++||
T Consensus 9 fkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vVY 88 (198)
T KOG0079|consen 9 FKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 88 (198)
T ss_pred HHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEEEE
Confidence 567899999999999999999888654 55677765544 444 5688999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHHHH
Q 030233 93 DSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDW 172 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 172 (181)
|+++.+||.+...|++++.+.- +..|-++|+||+|.+.. ..+....+...+...++.+|++||++++|++.+|..
T Consensus 89 DVTn~ESF~Nv~rWLeei~~nc--dsv~~vLVGNK~d~~~R---rvV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF~c 163 (198)
T KOG0079|consen 89 DVTNGESFNNVKRWLEEIRNNC--DSVPKVLVGNKNDDPER---RVVDTEDARAFALQMGIELFETSAKENENVEAMFHC 163 (198)
T ss_pred ECcchhhhHhHHHHHHHHHhcC--ccccceecccCCCCccc---eeeehHHHHHHHHhcCchheehhhhhcccchHHHHH
Confidence 9999999999999999986543 47999999999998652 222222223333567778999999999999999999
Q ss_pred HHhhhhc
Q 030233 173 LSNNISV 179 (181)
Q Consensus 173 i~~~~~~ 179 (181)
|.+.+.+
T Consensus 164 it~qvl~ 170 (198)
T KOG0079|consen 164 ITKQVLQ 170 (198)
T ss_pred HHHHHHH
Confidence 9887643
No 69
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=100.00 E-value=2.1e-31 Score=182.84 Aligned_cols=149 Identities=21% Similarity=0.315 Sum_probs=122.5
Q ss_pred EcCCCCChHHHHHhhhcCCcc-cccCccceeEEEEEE----CCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCCc
Q 030233 23 VGLDASGKTTILYKMKLGEIV-TTTPTIGFNVEAVEY----KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDR 97 (181)
Q Consensus 23 ~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~~~~~----~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~ 97 (181)
+|+++||||||+++++.+.+. .+.+|.+.+.....+ ....+.+|||+|++++..++..+++.++++|+|||++++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 699999999999999988875 467888876654433 357899999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC-CHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHHHHHHhh
Q 030233 98 ERISEARNELHQILSDNELSNAALLVFANKQDLPNVM-PTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNN 176 (181)
Q Consensus 98 ~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~ 176 (181)
.+++.+..|+..+.+.. +++|+++|+||+|+.... ..+.. . .....++.|++|||++|+||+++|+++.+.
T Consensus 81 ~S~~~i~~w~~~i~~~~--~~~piilvgNK~Dl~~~~v~~~~~-~-----~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~ 152 (200)
T smart00176 81 VTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDVKDRKVKAKSI-T-----FHRKKNLQYYDISAKSNYNFEKPFLWLARK 152 (200)
T ss_pred HHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccCCHHHH-H-----HHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999988886642 579999999999985422 22221 1 113345689999999999999999999988
Q ss_pred hhc
Q 030233 177 ISV 179 (181)
Q Consensus 177 ~~~ 179 (181)
+.+
T Consensus 153 i~~ 155 (200)
T smart00176 153 LIG 155 (200)
T ss_pred HHh
Confidence 754
No 70
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=100.00 E-value=1.2e-31 Score=178.31 Aligned_cols=154 Identities=19% Similarity=0.207 Sum_probs=114.0
Q ss_pred cEEEEEcCCCCChHHHHHhhhcCCccccc-CccceeEEEEEECC--eEEEEEEcCCChhhHHHHHhhccCCCEEEEEEEC
Q 030233 18 IKLLMVGLDASGKTTILYKMKLGEIVTTT-PTIGFNVEAVEYKN--KSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDS 94 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~ 94 (181)
++|+++|++|+|||||+.+++.+.+.... |+.+.....+...+ ..+.+||++|++.. .+++.+|++++|||+
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~~~~-----~~~~~~~~~ilv~d~ 75 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEGGRFKKEVLVDGQSHLLLIRDEGGAPDA-----QFASWVDAVIFVFSL 75 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCccceEEEEEECCEEEEEEEEECCCCCch-----hHHhcCCEEEEEEEC
Confidence 48999999999999999999988765533 33333334455555 67899999998752 356789999999999
Q ss_pred CCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCcccc-CCccEEEEEeeccCCCCHHHHHHHH
Q 030233 95 SDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSL-GQRRWSIQSCSAISGQGLYEGLDWL 173 (181)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~~i~~l~~~i 173 (181)
++++||+.+..|+..+......+++|+++|+||+|+.... .+++......... ...++.|++|||++|+||+++|+.+
T Consensus 76 ~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~-~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~~ 154 (158)
T cd04103 76 ENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESN-PRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQEA 154 (158)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcC-CcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHHH
Confidence 9999999999999988776544679999999999974311 1111111111111 1234689999999999999999999
Q ss_pred Hhhh
Q 030233 174 SNNI 177 (181)
Q Consensus 174 ~~~~ 177 (181)
.+.+
T Consensus 155 ~~~~ 158 (158)
T cd04103 155 AQKI 158 (158)
T ss_pred HhhC
Confidence 8653
No 71
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=100.00 E-value=1.3e-31 Score=184.53 Aligned_cols=158 Identities=23% Similarity=0.367 Sum_probs=126.7
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEEE--EEEC--CeEEEEEEcCCChhhHHHHHhhccCCCEEE
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVEA--VEYK--NKSFCVWDVGGQNKIRALWRHYFRDTLGLT 89 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~~--~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii 89 (181)
...++|+++|++|+|||||++++.++.+. .+.+|.+..... +... ...+.+||+||++.+...+..+++.+++++
T Consensus 4 ~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~ii 83 (199)
T cd04110 4 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVI 83 (199)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEE
Confidence 34689999999999999999999998864 456777755433 3333 357899999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HHHHHhhhCccccCCccEEEEEeeccCCCCHH
Q 030233 90 FVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMP--TAEVADKLELYSLGQRRWSIQSCSAISGQGLY 167 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (181)
+|||++++++|..+..|+..+.... ...|+++|+||+|+.+... .++..... ...+.+++++||++|.|++
T Consensus 84 lv~D~~~~~s~~~~~~~~~~i~~~~--~~~piivVgNK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~~~gi~ 156 (199)
T cd04110 84 VVYDVTNGESFVNVKRWLQEIEQNC--DDVCKVLVGNKNDDPERKVVETEDAYKFA-----GQMGISLFETSAKENINVE 156 (199)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccccCHHHHHHHH-----HHcCCEEEEEECCCCcCHH
Confidence 9999999999999999998875542 5789999999999875322 23222222 1234579999999999999
Q ss_pred HHHHHHHhhhhc
Q 030233 168 EGLDWLSNNISV 179 (181)
Q Consensus 168 ~l~~~i~~~~~~ 179 (181)
++|+++.+.+..
T Consensus 157 ~lf~~l~~~~~~ 168 (199)
T cd04110 157 EMFNCITELVLR 168 (199)
T ss_pred HHHHHHHHHHHH
Confidence 999999988754
No 72
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=100.00 E-value=1.6e-31 Score=179.14 Aligned_cols=156 Identities=24% Similarity=0.418 Sum_probs=124.8
Q ss_pred CccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEEE--EEECC--eEEEEEEcCCChhhHHHHHhhccCCCEEEE
Q 030233 16 CRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVEA--VEYKN--KSFCVWDVGGQNKIRALWRHYFRDTLGLTF 90 (181)
Q Consensus 16 ~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~~--~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~ 90 (181)
..++|+++|+++||||||++++.++.+. .+.++.+.+... +...+ ..+.+||+||++.+...+..+++.++++++
T Consensus 2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 81 (165)
T cd01868 2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALL 81 (165)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEE
Confidence 3579999999999999999999988854 456777654433 33433 578999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhhCccccCCccEEEEEeeccCCCCHHH
Q 030233 91 VVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVM--PTAEVADKLELYSLGQRRWSIQSCSAISGQGLYE 168 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (181)
|+|++++.++..+..|+..+.+.. ..+.|+++|+||+|+.... ..++..... ...+++++++||++|.|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~ 155 (165)
T cd01868 82 VYDITKKQTFENVERWLKELRDHA-DSNIVIMLVGNKSDLRHLRAVPTEEAKAFA-----EKNGLSFIETSALDGTNVEE 155 (165)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECccccccccCCHHHHHHHH-----HHcCCEEEEEECCCCCCHHH
Confidence 999999999999999988876653 2468999999999986532 233333322 12345799999999999999
Q ss_pred HHHHHHhhh
Q 030233 169 GLDWLSNNI 177 (181)
Q Consensus 169 l~~~i~~~~ 177 (181)
+|+++.+.+
T Consensus 156 l~~~l~~~i 164 (165)
T cd01868 156 AFKQLLTEI 164 (165)
T ss_pred HHHHHHHHh
Confidence 999998765
No 73
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=100.00 E-value=4.9e-31 Score=176.11 Aligned_cols=156 Identities=15% Similarity=0.242 Sum_probs=121.9
Q ss_pred cEEEEEcCCCCChHHHHHhhhcCCccc-ccCccceeEEE--EEE--CCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEE
Q 030233 18 IKLLMVGLDASGKTTILYKMKLGEIVT-TTPTIGFNVEA--VEY--KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVV 92 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~~~~~~-~~~~~~~~~~~--~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (181)
+||+++|++|+|||||+++++++.+.. ..++.+.+... ... ....+.+|||+|++.+...+..+++.+|++++|+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 589999999999999999999887643 34454443332 222 3467899999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHHHH
Q 030233 93 DSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDW 172 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 172 (181)
|++++.++..+..|+..+.+. .++.|+++|+||+|+.+.. .++.. .+ ....+++++++||++|.|++++|+.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~--~~~~p~ivv~nK~Dl~~~~-~~~~~-~~----~~~~~~~~~~~Sa~~~~gv~~l~~~ 152 (161)
T cd04124 81 DVTRKITYKNLSKWYEELREY--RPEIPCIVVANKIDLDPSV-TQKKF-NF----AEKHNLPLYYVSAADGTNVVKLFQD 152 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHh--CCCCcEEEEEECccCchhH-HHHHH-HH----HHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 999999999998888887543 2478999999999985321 11111 11 1123458999999999999999999
Q ss_pred HHhhhhccC
Q 030233 173 LSNNISVKN 181 (181)
Q Consensus 173 i~~~~~~~~ 181 (181)
+.+.+.+++
T Consensus 153 l~~~~~~~~ 161 (161)
T cd04124 153 AIKLAVSYK 161 (161)
T ss_pred HHHHHHhcC
Confidence 999887653
No 74
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=100.00 E-value=1.8e-31 Score=179.40 Aligned_cols=157 Identities=22% Similarity=0.317 Sum_probs=125.6
Q ss_pred ccEEEEEcCCCCChHHHHHhhhcCCccc-ccCccceeEEE--EEE--CCeEEEEEEcCCChhhHHHHHhhccCCCEEEEE
Q 030233 17 RIKLLMVGLDASGKTTILYKMKLGEIVT-TTPTIGFNVEA--VEY--KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFV 91 (181)
Q Consensus 17 ~~~i~~~G~~~~GKssl~~~~~~~~~~~-~~~~~~~~~~~--~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v 91 (181)
.++|+++|++|+|||||++++.++.+.. +.++.+.+... +.. ....+.+||+||++.+..++..+++.+|++++|
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v 83 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLV 83 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEE
Confidence 4899999999999999999999887543 45565654432 333 346899999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhhCccccCCccEEEEEeeccCCCCHHHH
Q 030233 92 VDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV--MPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEG 169 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 169 (181)
+|++++++++.+..|+..+.... .++.|+++|+||.|+.+. ...++..... ...++.++++||++|+|++++
T Consensus 84 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~~~~i~~~ 157 (168)
T cd01866 84 YDITRRETFNHLTSWLEDARQHS-NSNMTIMLIGNKCDLESRREVSYEEGEAFA-----KEHGLIFMETSAKTASNVEEA 157 (168)
T ss_pred EECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECcccccccCCCHHHHHHHH-----HHcCCEEEEEeCCCCCCHHHH
Confidence 99999999999999998886643 267999999999998743 2333333322 223457999999999999999
Q ss_pred HHHHHhhhhc
Q 030233 170 LDWLSNNISV 179 (181)
Q Consensus 170 ~~~i~~~~~~ 179 (181)
|+++.+.+.+
T Consensus 158 ~~~~~~~~~~ 167 (168)
T cd01866 158 FINTAKEIYE 167 (168)
T ss_pred HHHHHHHHHh
Confidence 9999988764
No 75
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=6.3e-31 Score=180.17 Aligned_cols=157 Identities=19% Similarity=0.369 Sum_probs=124.6
Q ss_pred cEEEEEcCCCCChHHHHHhhhcCCcc--cccCccceeEEE--EEEC--CeEEEEEEcCCChhhHHHHHhhccCCCEEEEE
Q 030233 18 IKLLMVGLDASGKTTILYKMKLGEIV--TTTPTIGFNVEA--VEYK--NKSFCVWDVGGQNKIRALWRHYFRDTLGLTFV 91 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~~~~~--~~~~~~~~~~~~--~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v 91 (181)
+||+++|++|+|||||++++.++.+. .+.+|.+.+... +... ...+.+|||||++.+...+..+++.+|++++|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 58999999999999999999998864 456666655433 3333 46899999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhhCccccCCccEEEEEeeccCCCCHHHH
Q 030233 92 VDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV--MPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEG 169 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 169 (181)
+|++++++++.+..|+..+... ...++|+++|+||+|+... ...++..... ...+.+|+++||++|+|++++
T Consensus 81 ~D~~~~~s~~~~~~~~~~i~~~-~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~-----~~~~~~~~e~Sa~~~~~v~~l 154 (191)
T cd04112 81 YDITNKASFDNIRAWLTEIKEY-AQEDVVIMLLGNKADMSGERVVKREDGERLA-----KEYGVPFMETSAKTGLNVELA 154 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEEcccchhccccCHHHHHHHH-----HHcCCeEEEEeCCCCCCHHHH
Confidence 9999999999999988887654 2247899999999998642 2223322222 123357999999999999999
Q ss_pred HHHHHhhhhcc
Q 030233 170 LDWLSNNISVK 180 (181)
Q Consensus 170 ~~~i~~~~~~~ 180 (181)
|+++.+.+.+.
T Consensus 155 ~~~l~~~~~~~ 165 (191)
T cd04112 155 FTAVAKELKHR 165 (191)
T ss_pred HHHHHHHHHHh
Confidence 99999887654
No 76
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.98 E-value=1e-30 Score=176.01 Aligned_cols=159 Identities=18% Similarity=0.291 Sum_probs=125.0
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhcCCccc-ccCccceeEE--EEEE--CCeEEEEEEcCCChhhHHHHHhhccCCCEEE
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKLGEIVT-TTPTIGFNVE--AVEY--KNKSFCVWDVGGQNKIRALWRHYFRDTLGLT 89 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~~-~~~~~~~~~~--~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii 89 (181)
...++|+++|++++|||||++++.++.+.. +.++.+.... .+.. ....+.+||+||++.+..++..+++.+|+++
T Consensus 3 ~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i 82 (170)
T cd04116 3 SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCL 82 (170)
T ss_pred ceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEE
Confidence 346899999999999999999999888654 4567665543 3333 4467899999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCC---CCCCCeEEEEEeCCCCCC-CCCHHHHHhhhCccccCCccEEEEEeeccCCCC
Q 030233 90 FVVDSSDRERISEARNELHQILSDN---ELSNAALLVFANKQDLPN-VMPTAEVADKLELYSLGQRRWSIQSCSAISGQG 165 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~piilv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (181)
+|||++++++++.+..|...+.... ...+.|+++|+||+|+.. ....+++.+.... ....+++++||++|.|
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~e~Sa~~~~~ 158 (170)
T cd04116 83 LTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCRE----NGDYPYFETSAKDATN 158 (170)
T ss_pred EEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHHH----CCCCeEEEEECCCCCC
Confidence 9999999999999998888776532 225689999999999853 2334444433221 1224799999999999
Q ss_pred HHHHHHHHHhhh
Q 030233 166 LYEGLDWLSNNI 177 (181)
Q Consensus 166 i~~l~~~i~~~~ 177 (181)
++++|+++.+.+
T Consensus 159 v~~~~~~~~~~~ 170 (170)
T cd04116 159 VAAAFEEAVRRV 170 (170)
T ss_pred HHHHHHHHHhhC
Confidence 999999998753
No 77
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.98 E-value=2.4e-30 Score=171.93 Aligned_cols=156 Identities=37% Similarity=0.655 Sum_probs=132.1
Q ss_pred EEEEcCCCCChHHHHHhhhcCCc-ccccCccceeEEEEEECCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCCcc
Q 030233 20 LLMVGLDASGKTTILYKMKLGEI-VTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRE 98 (181)
Q Consensus 20 i~~~G~~~~GKssl~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~ 98 (181)
|+++|++|+|||||++++.+..+ ..+.|+.+.....+......+.+||+||++.+...+..++..+|++++|+|+++++
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~ 81 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRKVTKGNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAADRT 81 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCCHH
Confidence 78999999999999999999874 45677888777777777899999999999999999999999999999999999988
Q ss_pred cHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHHHHHHh
Q 030233 99 RISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSN 175 (181)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~ 175 (181)
++.....++..+.......++|+++|+||+|+.+....+++.............++++++||++|.|+++++++|.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 82 ALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDWLIK 158 (159)
T ss_pred HHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHHHhCcccccCCceEEEEEEeccCCChHHHHHHHhh
Confidence 89888888888776544468999999999998776555555555544433445678999999999999999999875
No 78
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.98 E-value=2.2e-31 Score=177.74 Aligned_cols=154 Identities=21% Similarity=0.358 Sum_probs=122.0
Q ss_pred cEEEEEcCCCCChHHHHHhhhcCCc-ccccCccceeEE--EEEEC--CeEEEEEEcCCChhhHHHHHhhccCCCEEEEEE
Q 030233 18 IKLLMVGLDASGKTTILYKMKLGEI-VTTTPTIGFNVE--AVEYK--NKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVV 92 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~~~~-~~~~~~~~~~~~--~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (181)
+||+++|++++|||||++++.++.+ ....++.+.... .+... ...+.+||+||++.+...+..+++.+|++++|+
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 5899999999999999999998885 444555554433 33333 367899999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHH
Q 030233 93 DSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVM--PTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGL 170 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 170 (181)
|+++++++..+..|+..+.... .++.|+++++||+|+.+.. ..++...... ..++.++++||++|+|++++|
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~~~ 154 (161)
T cd04113 81 DITNRTSFEALPTWLSDARALA-SPNIVVILVGNKSDLADQREVTFLEASRFAQ-----ENGLLFLETSALTGENVEEAF 154 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEEchhcchhccCCHHHHHHHHH-----HcCCEEEEEECCCCCCHHHHH
Confidence 9999999999999988765432 3689999999999986532 2333333221 233689999999999999999
Q ss_pred HHHHhhh
Q 030233 171 DWLSNNI 177 (181)
Q Consensus 171 ~~i~~~~ 177 (181)
+++++.+
T Consensus 155 ~~~~~~~ 161 (161)
T cd04113 155 LKCARSI 161 (161)
T ss_pred HHHHHhC
Confidence 9998764
No 79
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.98 E-value=8.4e-31 Score=175.67 Aligned_cols=157 Identities=22% Similarity=0.369 Sum_probs=123.0
Q ss_pred CccEEEEEcCCCCChHHHHHhhhcCCccc-ccCccceeE--EEEEECC--eEEEEEEcCCChhhHHHHHhhccCCCEEEE
Q 030233 16 CRIKLLMVGLDASGKTTILYKMKLGEIVT-TTPTIGFNV--EAVEYKN--KSFCVWDVGGQNKIRALWRHYFRDTLGLTF 90 (181)
Q Consensus 16 ~~~~i~~~G~~~~GKssl~~~~~~~~~~~-~~~~~~~~~--~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~ 90 (181)
+.+||+++|++|+|||||++++.++.+.. +.++.+... ..+...+ ..+.+||+||++.+...+..+++.+|++++
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll 81 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII 81 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 46899999999999999999999877543 455655433 3444444 588999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhhCccccCCccEEEEEeeccCCCCHHH
Q 030233 91 VVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVM--PTAEVADKLELYSLGQRRWSIQSCSAISGQGLYE 168 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (181)
|||++++.++..+..|+..+.... ..++|+++|+||+|+.+.. ..++...... ......++++||++|+|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~e~Sa~~~~~v~~ 156 (165)
T cd01864 82 AYDITRRSSFESVPHWIEEVEKYG-ASNVVLLLIGNKCDLEEQREVLFEEACTLAE----KNGMLAVLETSAKESQNVEE 156 (165)
T ss_pred EEECcCHHHHHhHHHHHHHHHHhC-CCCCcEEEEEECcccccccccCHHHHHHHHH----HcCCcEEEEEECCCCCCHHH
Confidence 999999999999999988886542 3579999999999986532 2222222221 11224689999999999999
Q ss_pred HHHHHHhhh
Q 030233 169 GLDWLSNNI 177 (181)
Q Consensus 169 l~~~i~~~~ 177 (181)
+|+++.+.+
T Consensus 157 ~~~~l~~~l 165 (165)
T cd01864 157 AFLLMATEL 165 (165)
T ss_pred HHHHHHHhC
Confidence 999998753
No 80
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=5.6e-32 Score=170.08 Aligned_cols=158 Identities=22% Similarity=0.281 Sum_probs=130.2
Q ss_pred ccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEEE--EEE--CCeEEEEEEcCCChhhHHHHHhhccCCCEEEEE
Q 030233 17 RIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVEA--VEY--KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFV 91 (181)
Q Consensus 17 ~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~~--~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v 91 (181)
-++|+++|..|+|||+|+++|..+-++ ....|+|+.... ++. +.++++||||+|+++|+++...+++.++++|+|
T Consensus 7 lfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahalilv 86 (213)
T KOG0095|consen 7 LFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALILV 86 (213)
T ss_pred eEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEEE
Confidence 479999999999999999999988864 567888866554 333 678999999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHHH
Q 030233 92 VDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLD 171 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 171 (181)
||++-..+|+.+.+|+.++.+. ...++.-|+|+||.|+.+ .+++.............+.|.++||++.+|++.+|.
T Consensus 87 ydiscqpsfdclpewlreie~y-an~kvlkilvgnk~d~~d---rrevp~qigeefs~~qdmyfletsakea~nve~lf~ 162 (213)
T KOG0095|consen 87 YDISCQPSFDCLPEWLREIEQY-ANNKVLKILVGNKIDLAD---RREVPQQIGEEFSEAQDMYFLETSAKEADNVEKLFL 162 (213)
T ss_pred EecccCcchhhhHHHHHHHHHH-hhcceEEEeeccccchhh---hhhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHHH
Confidence 9999999999999999998654 335777899999999876 333333333333344667799999999999999999
Q ss_pred HHHhhhh
Q 030233 172 WLSNNIS 178 (181)
Q Consensus 172 ~i~~~~~ 178 (181)
.++..+.
T Consensus 163 ~~a~rli 169 (213)
T KOG0095|consen 163 DLACRLI 169 (213)
T ss_pred HHHHHHH
Confidence 9887654
No 81
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.98 E-value=8.3e-32 Score=184.20 Aligned_cols=159 Identities=19% Similarity=0.211 Sum_probs=121.2
Q ss_pred EEEEEcCCCCChHHHHHhhhcCCccc-ccCccceeEE-EEEE--CCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEEC
Q 030233 19 KLLMVGLDASGKTTILYKMKLGEIVT-TTPTIGFNVE-AVEY--KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDS 94 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~~~~~~-~~~~~~~~~~-~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~ 94 (181)
||+++|++|+|||||++++.++.++. +.||.+.... .+.. ....+.+|||+|++.+..++..+++.+|++++|||+
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~dv 81 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFSV 81 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEEC
Confidence 79999999999999999999988754 5667665443 2333 336899999999999999999999999999999999
Q ss_pred CCcccHHHHH-HHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHH---------hhhCcccc-CCccEEEEEeeccCC
Q 030233 95 SDRERISEAR-NELHQILSDNELSNAALLVFANKQDLPNVMPTAEVA---------DKLELYSL-GQRRWSIQSCSAISG 163 (181)
Q Consensus 95 ~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~---------~~~~~~~~-~~~~~~~~~~Sa~~~ 163 (181)
+++++|+.+. .|+..+... .++.|+++|+||+|+.......+.. .......+ ....+.|++|||++|
T Consensus 82 ~~~~sf~~~~~~~~~~i~~~--~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~ 159 (189)
T cd04134 82 DSPDSLENVESKWLGEIREH--CPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKLN 159 (189)
T ss_pred CCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCcC
Confidence 9999999886 466666543 2579999999999997643322110 00001111 112367999999999
Q ss_pred CCHHHHHHHHHhhhhc
Q 030233 164 QGLYEGLDWLSNNISV 179 (181)
Q Consensus 164 ~~i~~l~~~i~~~~~~ 179 (181)
+|++++|+++.+.+..
T Consensus 160 ~~v~e~f~~l~~~~~~ 175 (189)
T cd04134 160 RGVNEAFTEAARVALN 175 (189)
T ss_pred CCHHHHHHHHHHHHhc
Confidence 9999999999988764
No 82
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.98 E-value=2.1e-31 Score=179.46 Aligned_cols=158 Identities=20% Similarity=0.370 Sum_probs=124.1
Q ss_pred ccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEE--EEEEC--CeEEEEEEcCCChhhH-HHHHhhccCCCEEEE
Q 030233 17 RIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVE--AVEYK--NKSFCVWDVGGQNKIR-ALWRHYFRDTLGLTF 90 (181)
Q Consensus 17 ~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~--~~~~~--~~~~~i~d~~g~~~~~-~~~~~~~~~~d~ii~ 90 (181)
.++|+++|++|+|||||+++++++.+. .+.++.+.... .+... ...+.+||++|++.+. .++..+++.+|++++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~ 81 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence 579999999999999999999988864 45666665443 34343 3789999999999887 568888999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH-HHHHhhhCccccCCccEEEEEeeccC---CCCH
Q 030233 91 VVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPT-AEVADKLELYSLGQRRWSIQSCSAIS---GQGL 166 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~~i 166 (181)
|||+++++++..+..|+..+.......++|+++|+||+|+...... .+....+. ...+++|+++||++ +.++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~e~Sa~~~~~~~~i 157 (170)
T cd04115 82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFA----DAHSMPLFETSAKDPSENDHV 157 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHH----HHcCCcEEEEeccCCcCCCCH
Confidence 9999999999999999988876544467999999999998653221 11222221 22346799999999 9999
Q ss_pred HHHHHHHHhhhh
Q 030233 167 YEGLDWLSNNIS 178 (181)
Q Consensus 167 ~~l~~~i~~~~~ 178 (181)
+++|..+.+.+.
T Consensus 158 ~~~f~~l~~~~~ 169 (170)
T cd04115 158 EAIFMTLAHKLK 169 (170)
T ss_pred HHHHHHHHHHhh
Confidence 999999998764
No 83
>PLN03110 Rab GTPase; Provisional
Probab=99.98 E-value=2.7e-31 Score=184.99 Aligned_cols=160 Identities=22% Similarity=0.375 Sum_probs=128.0
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEE--EEEEC--CeEEEEEEcCCChhhHHHHHhhccCCCEEE
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVE--AVEYK--NKSFCVWDVGGQNKIRALWRHYFRDTLGLT 89 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~--~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii 89 (181)
...+||+++|++|+|||||++++.++.+. .+.+|.+.+.. .+... ...+.+||++|++.+...+..+++.+++++
T Consensus 10 ~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~i 89 (216)
T PLN03110 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL 89 (216)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEE
Confidence 45689999999999999999999988864 55677776643 34443 368999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH-HHHHhhhCccccCCccEEEEEeeccCCCCHHH
Q 030233 90 FVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPT-AEVADKLELYSLGQRRWSIQSCSAISGQGLYE 168 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (181)
+|||++++++++.+..|+..+.... ..+.|+++|+||+|+.+.... ++....+. ...+++++++||++|.|+++
T Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~----~~~~~~~~e~SA~~g~~v~~ 164 (216)
T PLN03110 90 LVYDITKRQTFDNVQRWLRELRDHA-DSNIVIMMAGNKSDLNHLRSVAEEDGQALA----EKEGLSFLETSALEATNVEK 164 (216)
T ss_pred EEEECCChHHHHHHHHHHHHHHHhC-CCCCeEEEEEEChhcccccCCCHHHHHHHH----HHcCCEEEEEeCCCCCCHHH
Confidence 9999999999999999988776542 257999999999998653222 12222222 22456899999999999999
Q ss_pred HHHHHHhhhhc
Q 030233 169 GLDWLSNNISV 179 (181)
Q Consensus 169 l~~~i~~~~~~ 179 (181)
+|+++.+.+.+
T Consensus 165 lf~~l~~~i~~ 175 (216)
T PLN03110 165 AFQTILLEIYH 175 (216)
T ss_pred HHHHHHHHHHH
Confidence 99999887754
No 84
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.98 E-value=7.5e-31 Score=177.16 Aligned_cols=157 Identities=21% Similarity=0.232 Sum_probs=117.2
Q ss_pred cEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEE-EEEE--CCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEE
Q 030233 18 IKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVE-AVEY--KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVD 93 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~-~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (181)
++|+++|++|||||||+.+++.+.+. .+.||.+.... .+.. ....+.+|||+|++.+...+..+++.+|++|+|||
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d 81 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFS 81 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEEE
Confidence 68999999999999999999998864 45666653322 2333 34678999999999999999999999999999999
Q ss_pred CCCcccHHHHHH-HHHHHHcCCCCCCCeEEEEEeCCCCCCCCC-HHHHHhh--------hCccccC-CccEEEEEeeccC
Q 030233 94 SSDRERISEARN-ELHQILSDNELSNAALLVFANKQDLPNVMP-TAEVADK--------LELYSLG-QRRWSIQSCSAIS 162 (181)
Q Consensus 94 ~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~D~~~~~~-~~~~~~~--------~~~~~~~-~~~~~~~~~Sa~~ 162 (181)
++++++|+.+.. |+..+... .++.|+++|+||+|+.+... .+.+... ....... .....+++|||++
T Consensus 82 ~~~~~sf~~~~~~~~~~~~~~--~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 159 (174)
T cd01871 82 LVSPASFENVRAKWYPEVRHH--CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALT 159 (174)
T ss_pred CCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEecccc
Confidence 999999999975 65555443 25799999999999854211 1111111 0000011 1224899999999
Q ss_pred CCCHHHHHHHHHhh
Q 030233 163 GQGLYEGLDWLSNN 176 (181)
Q Consensus 163 ~~~i~~l~~~i~~~ 176 (181)
|+|++++|+.+.+.
T Consensus 160 ~~~i~~~f~~l~~~ 173 (174)
T cd01871 160 QKGLKTVFDEAIRA 173 (174)
T ss_pred cCCHHHHHHHHHHh
Confidence 99999999999865
No 85
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.98 E-value=3e-31 Score=177.27 Aligned_cols=152 Identities=18% Similarity=0.343 Sum_probs=121.7
Q ss_pred cEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEEE--EEE----CCeEEEEEEcCCChhhHHHHHhhccCCCEEEE
Q 030233 18 IKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVEA--VEY----KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTF 90 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~~--~~~----~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~ 90 (181)
+||+++|++++|||||+++++++.+. .+.+|.+.+... +.+ ....+.+|||||++++...+..+++.+|++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 48999999999999999999988754 456777665433 333 35789999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhhCccccCCccEEEEEeeccCCCCHHH
Q 030233 91 VVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVM--PTAEVADKLELYSLGQRRWSIQSCSAISGQGLYE 168 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (181)
|||++++++++.+..|+..+.... .+.|+++|+||+|+.... +.++..... ...+++++++||++|.|+++
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~ 153 (162)
T cd04106 81 VFSTTDRESFEAIESWKEKVEAEC--GDIPMVLVQTKIDLLDQAVITNEEAEALA-----KRLQLPLFRTSVKDDFNVTE 153 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhcccccCCCHHHHHHHH-----HHcCCeEEEEECCCCCCHHH
Confidence 999999999999999888775432 579999999999986532 223332222 12334799999999999999
Q ss_pred HHHHHHhh
Q 030233 169 GLDWLSNN 176 (181)
Q Consensus 169 l~~~i~~~ 176 (181)
+|++|..+
T Consensus 154 l~~~l~~~ 161 (162)
T cd04106 154 LFEYLAEK 161 (162)
T ss_pred HHHHHHHh
Confidence 99999865
No 86
>PLN03118 Rab family protein; Provisional
Probab=99.98 E-value=5e-31 Score=183.28 Aligned_cols=160 Identities=20% Similarity=0.339 Sum_probs=126.2
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEE--EEEC--CeEEEEEEcCCChhhHHHHHhhccCCCEEEE
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEA--VEYK--NKSFCVWDVGGQNKIRALWRHYFRDTLGLTF 90 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~ 90 (181)
...++|+++|++|+|||||+++++++.+..+.++.+.+... +... ...+.+|||||++.+...+..+++.+|++++
T Consensus 12 ~~~~kv~ivG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vl 91 (211)
T PLN03118 12 DLSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGIIL 91 (211)
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence 35789999999999999999999998887788888765543 3333 4678999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHcC-CCCCCCeEEEEEeCCCCCCCCC--HHHHHhhhCccccCCccEEEEEeeccCCCCHH
Q 030233 91 VVDSSDRERISEARNELHQILSD-NELSNAALLVFANKQDLPNVMP--TAEVADKLELYSLGQRRWSIQSCSAISGQGLY 167 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~piilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (181)
|||++++++|..+..++...+.. ....+.|+++|+||+|+..... .++..... ...+..|+++||++|.|++
T Consensus 92 v~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~-----~~~~~~~~e~SAk~~~~v~ 166 (211)
T PLN03118 92 VYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALA-----KEHGCLFLECSAKTRENVE 166 (211)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHH-----HHcCCEEEEEeCCCCCCHH
Confidence 99999999999998755444432 2234689999999999865322 22222211 2234579999999999999
Q ss_pred HHHHHHHhhhhc
Q 030233 168 EGLDWLSNNISV 179 (181)
Q Consensus 168 ~l~~~i~~~~~~ 179 (181)
++|++|.+.+.+
T Consensus 167 ~l~~~l~~~~~~ 178 (211)
T PLN03118 167 QCFEELALKIME 178 (211)
T ss_pred HHHHHHHHHHHh
Confidence 999999987754
No 87
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.97 E-value=3e-30 Score=172.55 Aligned_cols=155 Identities=22% Similarity=0.397 Sum_probs=125.4
Q ss_pred ccEEEEEcCCCCChHHHHHhhhcCCccc-ccCccceeE--EEEEE--CCeEEEEEEcCCChhhHHHHHhhccCCCEEEEE
Q 030233 17 RIKLLMVGLDASGKTTILYKMKLGEIVT-TTPTIGFNV--EAVEY--KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFV 91 (181)
Q Consensus 17 ~~~i~~~G~~~~GKssl~~~~~~~~~~~-~~~~~~~~~--~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v 91 (181)
++||+++|++++|||||++++.++.+.. ..++.+... ..+.+ ....+.+||+||++.+...+..+++.+|++++|
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 80 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence 4799999999999999999999998665 667776443 33344 446889999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhhCccccCCccEEEEEeeccCCCCHHHH
Q 030233 92 VDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV--MPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEG 169 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 169 (181)
+|+++++++.....|+..+..... +..|+++++||+|+... ...++...... ..+..++++||++|.|++++
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~l 154 (163)
T cd01860 81 YDITSEESFEKAKSWVKELQRNAS-PNIIIALVGNKADLESKRQVSTEEAQEYAD-----ENGLLFFETSAKTGENVNEL 154 (163)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECccccccCcCCHHHHHHHHH-----HcCCEEEEEECCCCCCHHHH
Confidence 999999999999999888876543 67999999999998642 23333333221 12357999999999999999
Q ss_pred HHHHHhhh
Q 030233 170 LDWLSNNI 177 (181)
Q Consensus 170 ~~~i~~~~ 177 (181)
|+++.+.+
T Consensus 155 ~~~l~~~l 162 (163)
T cd01860 155 FTEIAKKL 162 (163)
T ss_pred HHHHHHHh
Confidence 99998875
No 88
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.97 E-value=1e-30 Score=174.69 Aligned_cols=154 Identities=25% Similarity=0.393 Sum_probs=126.7
Q ss_pred EEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEEEEEE----CCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEE
Q 030233 19 KLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVEAVEY----KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVD 93 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~~~~~----~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (181)
||+++|+++||||||++++.++.++ .+.+|.+.+...... ....+.+||++|++.+...+..+++.+|++++|||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 7999999999999999999998854 456777666554433 45679999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC--CCCHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHHH
Q 030233 94 SSDRERISEARNELHQILSDNELSNAALLVFANKQDLPN--VMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLD 171 (181)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 171 (181)
+++++|+..+..|+..+..... .+.|+++++||+|+.+ ..+.++..... ...+.+|+++||+++.|+.++|.
T Consensus 81 ~~~~~S~~~~~~~~~~i~~~~~-~~~~iivvg~K~D~~~~~~v~~~~~~~~~-----~~~~~~~~e~Sa~~~~~v~~~f~ 154 (162)
T PF00071_consen 81 VTDEESFENLKKWLEEIQKYKP-EDIPIIVVGNKSDLSDEREVSVEEAQEFA-----KELGVPYFEVSAKNGENVKEIFQ 154 (162)
T ss_dssp TTBHHHHHTHHHHHHHHHHHST-TTSEEEEEEETTTGGGGSSSCHHHHHHHH-----HHTTSEEEEEBTTTTTTHHHHHH
T ss_pred cccccccccccccccccccccc-ccccceeeeccccccccccchhhHHHHHH-----HHhCCEEEEEECCCCCCHHHHHH
Confidence 9999999999999988866533 4699999999999875 33444433333 22336899999999999999999
Q ss_pred HHHhhhh
Q 030233 172 WLSNNIS 178 (181)
Q Consensus 172 ~i~~~~~ 178 (181)
.+.+.+.
T Consensus 155 ~~i~~i~ 161 (162)
T PF00071_consen 155 ELIRKIL 161 (162)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9998874
No 89
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.97 E-value=4e-30 Score=181.74 Aligned_cols=156 Identities=21% Similarity=0.200 Sum_probs=124.5
Q ss_pred cEEEEEcCCCCChHHHHHhhhcCCcc-cccCccce-eEEEEEECC--eEEEEEEcCCChhhHHHHHhhccCCCEEEEEEE
Q 030233 18 IKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGF-NVEAVEYKN--KSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVD 93 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~-~~~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (181)
++|+++|++|+|||||+++++++.+. .+.+|.+. ....+.+.+ ..+.+|||+|++.+..++..++..+|++|+|||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfd 80 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFS 80 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEe
Confidence 58999999999999999999988875 45666652 233344443 678899999999999888888999999999999
Q ss_pred CCCcccHHHHHHHHHHHHcCC--------CCCCCeEEEEEeCCCCCC--CCCHHHHHhhhCccccCCccEEEEEeeccCC
Q 030233 94 SSDRERISEARNELHQILSDN--------ELSNAALLVFANKQDLPN--VMPTAEVADKLELYSLGQRRWSIQSCSAISG 163 (181)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~--------~~~~~piilv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (181)
++++++|+.+..|+..+.... ...+.|+++|+||+|+.. ....+++...... ...+.++++||++|
T Consensus 81 v~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~----~~~~~~~evSAktg 156 (247)
T cd04143 81 LDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGG----DENCAYFEVSAKKN 156 (247)
T ss_pred CCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHh----cCCCEEEEEeCCCC
Confidence 999999999999988886531 235799999999999864 3344555544421 12457999999999
Q ss_pred CCHHHHHHHHHhhh
Q 030233 164 QGLYEGLDWLSNNI 177 (181)
Q Consensus 164 ~~i~~l~~~i~~~~ 177 (181)
.|++++|++|....
T Consensus 157 ~gI~elf~~L~~~~ 170 (247)
T cd04143 157 SNLDEMFRALFSLA 170 (247)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999998764
No 90
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.97 E-value=8.4e-31 Score=179.89 Aligned_cols=155 Identities=18% Similarity=0.277 Sum_probs=122.4
Q ss_pred cEEEEEcCCCCChHHHHHhhhcCCcc--cccCccceeEE--EEEECC--eEEEEEEcCCChhhHHHHHhhccCCCEEEEE
Q 030233 18 IKLLMVGLDASGKTTILYKMKLGEIV--TTTPTIGFNVE--AVEYKN--KSFCVWDVGGQNKIRALWRHYFRDTLGLTFV 91 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~~~~~--~~~~~~~~~~~--~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v 91 (181)
+||+++|++|+|||||+++++++.+. .+.+|.+.... .+...+ ..+.+||++|.+.+...+..+++.+|++++|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 48999999999999999999998865 36777775443 344443 5677999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC------HHHHHhhhCccccCCccEEEEEeeccCCCC
Q 030233 92 VDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMP------TAEVADKLELYSLGQRRWSIQSCSAISGQG 165 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (181)
||++++++++....|+..+.... ++.|+++|+||+|+.+... .++..... ...+.+++++||++|+|
T Consensus 81 ~d~~~~~s~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~g 153 (193)
T cd04118 81 YDLTDSSSFERAKFWVKELQNLE--EHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFA-----DEIKAQHFETSSKTGQN 153 (193)
T ss_pred EECCCHHHHHHHHHHHHHHHhcC--CCCCEEEEEEcccccccccccCccCHHHHHHHH-----HHcCCeEEEEeCCCCCC
Confidence 99999999999988888876542 4789999999999854221 11222211 22345799999999999
Q ss_pred HHHHHHHHHhhhhc
Q 030233 166 LYEGLDWLSNNISV 179 (181)
Q Consensus 166 i~~l~~~i~~~~~~ 179 (181)
++++|+++.+.+.+
T Consensus 154 v~~l~~~i~~~~~~ 167 (193)
T cd04118 154 VDELFQKVAEDFVS 167 (193)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999987754
No 91
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.97 E-value=8.6e-32 Score=171.50 Aligned_cols=161 Identities=22% Similarity=0.412 Sum_probs=134.5
Q ss_pred CccEEEEEcCCCCChHHHHHhhhcCCcccc-cCccceeEEE--EEE---CCeEEEEEEcCCChhhHHHHHhhccCCCEEE
Q 030233 16 CRIKLLMVGLDASGKTTILYKMKLGEIVTT-TPTIGFNVEA--VEY---KNKSFCVWDVGGQNKIRALWRHYFRDTLGLT 89 (181)
Q Consensus 16 ~~~~i~~~G~~~~GKssl~~~~~~~~~~~~-~~~~~~~~~~--~~~---~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii 89 (181)
.++++.++|++-+|||||+.++..+.++.. .||.|++... ++. ..+++++|||+|+++++++...+++++-+++
T Consensus 7 yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgvl 86 (213)
T KOG0091|consen 7 YQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGVL 86 (213)
T ss_pred EEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccceE
Confidence 478999999999999999999999998764 6888866443 333 4578999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCC-eEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCCCHHH
Q 030233 90 FVVDSSDRERISEARNELHQILSDNELSNA-ALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYE 168 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (181)
+|||++|.+||+.+..|+.+.......+.. -..+|++|+|+.. .+++..+.+.+.+...++.|+|+||++|.|+++
T Consensus 87 lvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~S---qRqVt~EEaEklAa~hgM~FVETSak~g~NVeE 163 (213)
T KOG0091|consen 87 LVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQS---QRQVTAEEAEKLAASHGMAFVETSAKNGCNVEE 163 (213)
T ss_pred EEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhh---hccccHHHHHHHHHhcCceEEEecccCCCcHHH
Confidence 999999999999999999887665553444 4568999999975 555555555555577888999999999999999
Q ss_pred HHHHHHhhhhc
Q 030233 169 GLDWLSNNISV 179 (181)
Q Consensus 169 l~~~i~~~~~~ 179 (181)
.|..+.+.+..
T Consensus 164 AF~mlaqeIf~ 174 (213)
T KOG0091|consen 164 AFDMLAQEIFQ 174 (213)
T ss_pred HHHHHHHHHHH
Confidence 99999887653
No 92
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.97 E-value=5.8e-30 Score=170.88 Aligned_cols=155 Identities=21% Similarity=0.373 Sum_probs=124.7
Q ss_pred cEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEEE--EEE--CCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEE
Q 030233 18 IKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVEA--VEY--KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVV 92 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~~--~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (181)
+||+++|++++|||||++++.++.+. ...++.+.+... +.+ ....+.+||+||++.+...+..+++.+|++++|+
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999988764 366777655433 333 3468999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC-CHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHHH
Q 030233 93 DSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVM-PTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLD 171 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 171 (181)
|++++.++.....|+..+.......+.|+++|+||+|+.... ..++..... ...+++++++||++|.|++++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~~~~ 155 (161)
T cd01863 81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTREEGLKFA-----RKHNMLFIETSAKTRDGVQQAFE 155 (161)
T ss_pred ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCHHHHHHHH-----HHcCCEEEEEecCCCCCHHHHHH
Confidence 999999999999988887766555689999999999997332 333333322 22356799999999999999999
Q ss_pred HHHhhh
Q 030233 172 WLSNNI 177 (181)
Q Consensus 172 ~i~~~~ 177 (181)
++.+++
T Consensus 156 ~~~~~~ 161 (161)
T cd01863 156 ELVEKI 161 (161)
T ss_pred HHHHhC
Confidence 998753
No 93
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.97 E-value=7.7e-30 Score=170.68 Aligned_cols=157 Identities=22% Similarity=0.427 Sum_probs=124.9
Q ss_pred cEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEE--EEEECC--eEEEEEEcCCChhhHHHHHhhccCCCEEEEEE
Q 030233 18 IKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVE--AVEYKN--KSFCVWDVGGQNKIRALWRHYFRDTLGLTFVV 92 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~--~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (181)
+||+++|++++|||||++++.+..+. ...++.+.+.. .+...+ ..+.+||+||++.+...+..+++.+|++++||
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 58999999999999999999988753 34456565433 334433 68899999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHH
Q 030233 93 DSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVM--PTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGL 170 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 170 (181)
|++++.+++.+..|+..+..... +++|+++++||+|+.+.. ..+...... ...+++++++||++|+|++++|
T Consensus 81 d~~~~~s~~~~~~~l~~~~~~~~-~~~pivvv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~~~~i~~l~ 154 (164)
T smart00175 81 DITNRESFENLKNWLKELREYAD-PNVVIMLVGNKSDLEDQRQVSREEAEAFA-----EEHGLPFFETSAKTNTNVEEAF 154 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEEchhcccccCCCHHHHHHHH-----HHcCCeEEEEeCCCCCCHHHHH
Confidence 99999999999888887765532 589999999999986522 333333322 1234579999999999999999
Q ss_pred HHHHhhhhcc
Q 030233 171 DWLSNNISVK 180 (181)
Q Consensus 171 ~~i~~~~~~~ 180 (181)
+++.+.+.++
T Consensus 155 ~~i~~~~~~~ 164 (164)
T smart00175 155 EELAREILKR 164 (164)
T ss_pred HHHHHHHhhC
Confidence 9999988654
No 94
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.97 E-value=2e-30 Score=173.62 Aligned_cols=154 Identities=18% Similarity=0.264 Sum_probs=120.9
Q ss_pred cEEEEEcCCCCChHHHHHhhhcC--Cc-ccccCccceeEEE--EEE---CCeEEEEEEcCCChhhHHHHHhhccCCCEEE
Q 030233 18 IKLLMVGLDASGKTTILYKMKLG--EI-VTTTPTIGFNVEA--VEY---KNKSFCVWDVGGQNKIRALWRHYFRDTLGLT 89 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~~--~~-~~~~~~~~~~~~~--~~~---~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii 89 (181)
+||+++|++|||||||++++..+ .+ ..+.++.+.+... +.. ....+.+|||||++.+..++..+++.+|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 58999999999999999999864 33 4566777755433 322 3478999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHH-HHhhhCccccCCccEEEEEeeccCCCCHHH
Q 030233 90 FVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAE-VADKLELYSLGQRRWSIQSCSAISGQGLYE 168 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (181)
+|+|+++++++..+..|+..+.... .+.|+++|+||+|+.+...... ...... ...+.+++++||++|.|+++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gi~~ 154 (164)
T cd04101 81 LVYDVSNKASFENCSRWVNKVRTAS--KHMPGVLVGNKMDLADKAEVTDAQAQAFA----QANQLKFFKTSALRGVGYEE 154 (164)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccCCCHHHHHHHH----HHcCCeEEEEeCCCCCChHH
Confidence 9999999999999988888876543 4699999999999865432211 111111 12235799999999999999
Q ss_pred HHHHHHhhh
Q 030233 169 GLDWLSNNI 177 (181)
Q Consensus 169 l~~~i~~~~ 177 (181)
+|+.+.+.+
T Consensus 155 l~~~l~~~~ 163 (164)
T cd04101 155 PFESLARAF 163 (164)
T ss_pred HHHHHHHHh
Confidence 999998864
No 95
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.97 E-value=5.4e-30 Score=175.05 Aligned_cols=155 Identities=18% Similarity=0.207 Sum_probs=119.4
Q ss_pred cEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEE-EEEE---CCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEE
Q 030233 18 IKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVE-AVEY---KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVV 92 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~-~~~~---~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (181)
++|+++|++|+|||||+++++++.+. .+.++.+..+. .+.. ....+.+|||||++.+...+..+++.+|++++||
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~ 80 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLICY 80 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEE
Confidence 48999999999999999999998864 44566554432 2333 2467899999999999999999999999999999
Q ss_pred ECCCcccHHHHHH-HHHHHHcCCCCCCCeEEEEEeCCCCCCCC------CHHHHHhhhCccccCCccE-EEEEeeccCCC
Q 030233 93 DSSDRERISEARN-ELHQILSDNELSNAALLVFANKQDLPNVM------PTAEVADKLELYSLGQRRW-SIQSCSAISGQ 164 (181)
Q Consensus 93 d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~D~~~~~------~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 164 (181)
|++++++|+.+.. |+..+... .++.|+++|+||+|+.... ..++..... ...+. +++++||++|+
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~-----~~~~~~~~~e~Sa~~~~ 153 (187)
T cd04132 81 AVDNPTSLDNVEDKWFPEVNHF--CPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVA-----KKQGAFAYLECSAKTME 153 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEeChhhhhCccccCCcCHHHHHHHH-----HHcCCcEEEEccCCCCC
Confidence 9999999999865 65555432 2578999999999986532 122222211 11223 79999999999
Q ss_pred CHHHHHHHHHhhhhc
Q 030233 165 GLYEGLDWLSNNISV 179 (181)
Q Consensus 165 ~i~~l~~~i~~~~~~ 179 (181)
|++++|+.+.+.+..
T Consensus 154 ~v~~~f~~l~~~~~~ 168 (187)
T cd04132 154 NVEEVFDTAIEEALK 168 (187)
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999988765
No 96
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.97 E-value=4e-30 Score=172.90 Aligned_cols=155 Identities=21% Similarity=0.155 Sum_probs=122.4
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhcCCcc--cccCccceeEE--EEEECC--eEEEEEEcCCChhhHHHHHhhccCCCEE
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKLGEIV--TTTPTIGFNVE--AVEYKN--KSFCVWDVGGQNKIRALWRHYFRDTLGL 88 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~--~~~~~~~~~~~--~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~d~i 88 (181)
.+.++|+++|++|+|||||+++++++.+. .+.||.+.... .+...+ ..+.+||++|++.+...+..+++++|++
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~ 81 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA 81 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence 35689999999999999999999998874 56788775543 344433 6789999999999988888899999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC-----HHHHHhhhCccccCCccEEEEEeeccCC
Q 030233 89 TFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMP-----TAEVADKLELYSLGQRRWSIQSCSAISG 163 (181)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (181)
++|+|++++++++.+..|+..+... .++|+++|+||+|+.+... .+++.+.... ..++++||++|
T Consensus 82 llv~d~~~~~s~~~~~~~~~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~-------~~~~~~Sa~~~ 151 (169)
T cd01892 82 CLVYDSSDPKSFSYCAEVYKKYFML---GEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGL-------PPPLHFSSKLG 151 (169)
T ss_pred EEEEeCCCHHHHHHHHHHHHHhccC---CCCeEEEEEEcccccccccccccCHHHHHHHcCC-------CCCEEEEeccC
Confidence 9999999999999988888765332 4799999999999864321 2233222211 13689999999
Q ss_pred CCHHHHHHHHHhhhhc
Q 030233 164 QGLYEGLDWLSNNISV 179 (181)
Q Consensus 164 ~~i~~l~~~i~~~~~~ 179 (181)
+|++++|+.+.+.+..
T Consensus 152 ~~v~~lf~~l~~~~~~ 167 (169)
T cd01892 152 DSSNELFTKLATAAQY 167 (169)
T ss_pred ccHHHHHHHHHHHhhC
Confidence 9999999999988754
No 97
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.7e-30 Score=164.03 Aligned_cols=158 Identities=23% Similarity=0.342 Sum_probs=129.9
Q ss_pred ccEEEEEcCCCCChHHHHHhhhcCCccc-ccCccceeEE--EEEE--CCeEEEEEEcCCChhhHHHHHhhccCCCEEEEE
Q 030233 17 RIKLLMVGLDASGKTTILYKMKLGEIVT-TTPTIGFNVE--AVEY--KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFV 91 (181)
Q Consensus 17 ~~~i~~~G~~~~GKssl~~~~~~~~~~~-~~~~~~~~~~--~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v 91 (181)
-+|++++|+.|+|||+|+.+|..+.+.+ .++|+|+... .+.. ..++++||||+|+++|++....+++.+.+.++|
T Consensus 9 LfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAlLV 88 (214)
T KOG0086|consen 9 LFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLV 88 (214)
T ss_pred hheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceEEE
Confidence 4789999999999999999999988654 5678876544 4444 668999999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHHH
Q 030233 92 VDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLD 171 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 171 (181)
||++++++|..+..|+..+... ..+++-+++++||.|+.+. +++.-.....++++..+.+.++||++|+|+++.|-
T Consensus 89 YD~TsrdsfnaLtnWL~DaR~l-As~nIvviL~GnKkDL~~~---R~VtflEAs~FaqEnel~flETSa~TGeNVEEaFl 164 (214)
T KOG0086|consen 89 YDITSRDSFNALTNWLTDARTL-ASPNIVVILCGNKKDLDPE---REVTFLEASRFAQENELMFLETSALTGENVEEAFL 164 (214)
T ss_pred EeccchhhHHHHHHHHHHHHhh-CCCcEEEEEeCChhhcChh---hhhhHHHHHhhhcccceeeeeecccccccHHHHHH
Confidence 9999999999999999988554 3367889999999999873 33333333334456667899999999999999997
Q ss_pred HHHhhhh
Q 030233 172 WLSNNIS 178 (181)
Q Consensus 172 ~i~~~~~ 178 (181)
...+.+.
T Consensus 165 ~c~~tIl 171 (214)
T KOG0086|consen 165 KCARTIL 171 (214)
T ss_pred HHHHHHH
Confidence 7666554
No 98
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.97 E-value=2.8e-30 Score=172.42 Aligned_cols=154 Identities=21% Similarity=0.359 Sum_probs=121.4
Q ss_pred cEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEE--EEEECC--eEEEEEEcCCChhhHHHHHhhccCCCEEEEEE
Q 030233 18 IKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVE--AVEYKN--KSFCVWDVGGQNKIRALWRHYFRDTLGLTFVV 92 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~--~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (181)
+||+++|+++||||||++++.+..+. .+.++.+.+.. .+...+ ..+.+||+||++.+...+..+++.+|++++|+
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 48999999999999999999988754 34555554433 344433 57899999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHH
Q 030233 93 DSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV--MPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGL 170 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 170 (181)
|+++++++.....|+..+..... .+.|+++++||+|+.+. ...++..... ...++.++++||++|.|++++|
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~-~~~~iilv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~l~ 154 (161)
T cd01861 81 DITNRQSFDNTDKWIDDVRDERG-NDVIIVLVGNKTDLSDKRQVSTEEGEKKA-----KELNAMFIETSAKAGHNVKELF 154 (161)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCC-CCCEEEEEEEChhccccCccCHHHHHHHH-----HHhCCEEEEEeCCCCCCHHHHH
Confidence 99999999999999888765432 36999999999999542 2223322222 1234679999999999999999
Q ss_pred HHHHhhh
Q 030233 171 DWLSNNI 177 (181)
Q Consensus 171 ~~i~~~~ 177 (181)
+++.+.+
T Consensus 155 ~~i~~~l 161 (161)
T cd01861 155 RKIASAL 161 (161)
T ss_pred HHHHHhC
Confidence 9998753
No 99
>PLN03108 Rab family protein; Provisional
Probab=99.97 E-value=2.6e-30 Score=179.41 Aligned_cols=159 Identities=21% Similarity=0.310 Sum_probs=126.2
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEE--EEEEC--CeEEEEEEcCCChhhHHHHHhhccCCCEEE
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVE--AVEYK--NKSFCVWDVGGQNKIRALWRHYFRDTLGLT 89 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~--~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii 89 (181)
...+||+++|++|+|||||++++++..+. .+.++.+.+.. .+... ...+.+|||+|++.+..++..+++.+|+++
T Consensus 4 ~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~v 83 (210)
T PLN03108 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (210)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence 35689999999999999999999988754 35567665543 33343 357889999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhhCccccCCccEEEEEeeccCCCCHH
Q 030233 90 FVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV--MPTAEVADKLELYSLGQRRWSIQSCSAISGQGLY 167 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (181)
+|||+++++++..+..|+..+.... ....|+++++||+|+.+. .+.++..... ...+++++++||++|.|++
T Consensus 84 lv~D~~~~~s~~~l~~~~~~~~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~~~~v~ 157 (210)
T PLN03108 84 LVYDITRRETFNHLASWLEDARQHA-NANMTIMLIGNKCDLAHRRAVSTEEGEQFA-----KEHGLIFMEASAKTAQNVE 157 (210)
T ss_pred EEEECCcHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCccccCCCHHHHHHHH-----HHcCCEEEEEeCCCCCCHH
Confidence 9999999999999989888775443 257999999999998653 2333333322 2234579999999999999
Q ss_pred HHHHHHHhhhhc
Q 030233 168 EGLDWLSNNISV 179 (181)
Q Consensus 168 ~l~~~i~~~~~~ 179 (181)
++|+++++.+.+
T Consensus 158 e~f~~l~~~~~~ 169 (210)
T PLN03108 158 EAFIKTAAKIYK 169 (210)
T ss_pred HHHHHHHHHHHH
Confidence 999999887754
No 100
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.97 E-value=8.4e-31 Score=177.08 Aligned_cols=158 Identities=20% Similarity=0.207 Sum_probs=116.8
Q ss_pred EEEEcCCCCChHHHHHhhhcCCccc-ccCccceeEE-EEEE--CCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECC
Q 030233 20 LLMVGLDASGKTTILYKMKLGEIVT-TTPTIGFNVE-AVEY--KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSS 95 (181)
Q Consensus 20 i~~~G~~~~GKssl~~~~~~~~~~~-~~~~~~~~~~-~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~ 95 (181)
|+++|++|+|||||+++++++.+.. +.++...... .+.. ....+.+|||||++.+...+..+++.+|++++|||++
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~ 80 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVD 80 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECC
Confidence 5899999999999999999988644 4455443332 2333 3357899999999999999999999999999999999
Q ss_pred CcccHHHHHH-HHHHHHcCCCCCCCeEEEEEeCCCCCCCCC-HHHHH--------hhhCccccCCcc-EEEEEeeccCCC
Q 030233 96 DRERISEARN-ELHQILSDNELSNAALLVFANKQDLPNVMP-TAEVA--------DKLELYSLGQRR-WSIQSCSAISGQ 164 (181)
Q Consensus 96 ~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~D~~~~~~-~~~~~--------~~~~~~~~~~~~-~~~~~~Sa~~~~ 164 (181)
++++|+.+.. |+..+.... ++.|+++|+||+|+..... .+.+. .......+...+ ..+++|||++|.
T Consensus 81 ~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 158 (174)
T smart00174 81 SPASFENVKEKWYPEVKHFC--PNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQE 158 (174)
T ss_pred CHHHHHHHHHHHHHHHHhhC--CCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 9999999865 666664432 5899999999999865221 11110 000001112223 379999999999
Q ss_pred CHHHHHHHHHhhhhc
Q 030233 165 GLYEGLDWLSNNISV 179 (181)
Q Consensus 165 ~i~~l~~~i~~~~~~ 179 (181)
|++++|+.+.+.+.+
T Consensus 159 ~v~~lf~~l~~~~~~ 173 (174)
T smart00174 159 GVREVFEEAIRAALN 173 (174)
T ss_pred CHHHHHHHHHHHhcC
Confidence 999999999987754
No 101
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.97 E-value=1.9e-29 Score=170.05 Aligned_cols=159 Identities=17% Similarity=0.264 Sum_probs=122.8
Q ss_pred cEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEE--EEEEC--CeEEEEEEcCCChhhHHHHHhhccCCCEEEEEE
Q 030233 18 IKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVE--AVEYK--NKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVV 92 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~--~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (181)
+||+++|++|+|||||++++.++.+. ...++.+.+.. .+.+. ...+.+||+||++.+...+..+++.+|++++||
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 58999999999999999999988753 34455554432 23343 356789999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHcCC---CCCCCeEEEEEeCCCCCC--CCCHHHHHhhhCccccCCccEEEEEeeccCCCCHH
Q 030233 93 DSSDRERISEARNELHQILSDN---ELSNAALLVFANKQDLPN--VMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLY 167 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~---~~~~~piilv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (181)
|+++++++.....|...++... ...+.|+++|+||+|+.+ ....++...... .....+++++||++|.|++
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gv~ 156 (172)
T cd01862 81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQ----SNGNIPYFETSAKEAINVE 156 (172)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHH----HcCCceEEEEECCCCCCHH
Confidence 9999999988888777665432 234799999999999973 223444333322 1223589999999999999
Q ss_pred HHHHHHHhhhhcc
Q 030233 168 EGLDWLSNNISVK 180 (181)
Q Consensus 168 ~l~~~i~~~~~~~ 180 (181)
++|+++.+.+.++
T Consensus 157 ~l~~~i~~~~~~~ 169 (172)
T cd01862 157 QAFETIARKALEQ 169 (172)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999877654
No 102
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.97 E-value=2.1e-30 Score=174.23 Aligned_cols=157 Identities=18% Similarity=0.238 Sum_probs=123.1
Q ss_pred ccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEE-EEEE--CCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEE
Q 030233 17 RIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVE-AVEY--KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVV 92 (181)
Q Consensus 17 ~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~-~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (181)
.++|+++|.+|+|||||++++.++.+. .+.++.+.... .+.. ....+.+|||||++.+..++..+++.++++++||
T Consensus 1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~ 80 (168)
T cd04177 1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY 80 (168)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence 368999999999999999999988864 45666654332 2333 3368899999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HHHHHhhhCccccCCccEEEEEeeccCCCCHHHHH
Q 030233 93 DSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMP--TAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGL 170 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 170 (181)
|++++++++....|...+.+.....+.|+++++||+|+..... .++...... .....+++++||++|.|++++|
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~----~~~~~~~~~~SA~~~~~i~~~f 156 (168)
T cd04177 81 SVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQ----QWGNVPFYETSARKRTNVDEVF 156 (168)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHH----HcCCceEEEeeCCCCCCHHHHH
Confidence 9999999999998888876644446899999999999865322 222222111 1123689999999999999999
Q ss_pred HHHHhhh
Q 030233 171 DWLSNNI 177 (181)
Q Consensus 171 ~~i~~~~ 177 (181)
+++...+
T Consensus 157 ~~i~~~~ 163 (168)
T cd04177 157 IDLVRQI 163 (168)
T ss_pred HHHHHHH
Confidence 9998765
No 103
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.97 E-value=4.5e-30 Score=160.86 Aligned_cols=175 Identities=31% Similarity=0.594 Sum_probs=159.3
Q ss_pred chHHHHhhhhCCCCccEEEEEcCCCCChHHHHHhhhcCCc-ccccCccceeEEEEEECCeEEEEEEcCCChhhHHHHHhh
Q 030233 3 KLISRLAKRFFPQCRIKLLMVGLDASGKTTILYKMKLGEI-VTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHY 81 (181)
Q Consensus 3 ~~~~~~~~~~~~~~~~~i~~~G~~~~GKssl~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~ 81 (181)
+.+.|+.+.++ ..++.+.++|-.++|||||+|.++.+.+ ....||.|++-+.++-....+.+||.||++.+++.|+.+
T Consensus 7 k~L~wi~~~f~-k~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmrk~tkgnvtiklwD~gGq~rfrsmWery 85 (186)
T KOG0075|consen 7 KKLVWICNSFW-KEEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERY 85 (186)
T ss_pred HHHHHHHHHHH-HheeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeEEeccCceEEEEEecCCCccHHHHHHHH
Confidence 34555555555 5578999999999999999999998775 456899999999999999999999999999999999999
Q ss_pred ccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeecc
Q 030233 82 FRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAI 161 (181)
Q Consensus 82 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (181)
++.+++++||+|+++++.+...+..+..++..+...++|+++++||.|++...+...+-..+.+.....+.+-+|.+||+
T Consensus 86 cR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~~li~rmgL~sitdREvcC~siSck 165 (186)
T KOG0075|consen 86 CRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKIALIERMGLSSITDREVCCFSISCK 165 (186)
T ss_pred hhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccHHHHHHHhCccccccceEEEEEEEEc
Confidence 99999999999999999999999999999999888999999999999999999999999999998888889999999999
Q ss_pred CCCCHHHHHHHHHhhhh
Q 030233 162 SGQGLYEGLDWLSNNIS 178 (181)
Q Consensus 162 ~~~~i~~l~~~i~~~~~ 178 (181)
+..|++-+.+||.+...
T Consensus 166 e~~Nid~~~~Wli~hsk 182 (186)
T KOG0075|consen 166 EKVNIDITLDWLIEHSK 182 (186)
T ss_pred CCccHHHHHHHHHHHhh
Confidence 99999999999998754
No 104
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.97 E-value=9.7e-31 Score=179.13 Aligned_cols=156 Identities=15% Similarity=0.150 Sum_probs=112.2
Q ss_pred ccEEEEEcCCCCChHHHHH-hhhcCCc------ccccCccce-e-EE-----------EEEECCeEEEEEEcCCChhhHH
Q 030233 17 RIKLLMVGLDASGKTTILY-KMKLGEI------VTTTPTIGF-N-VE-----------AVEYKNKSFCVWDVGGQNKIRA 76 (181)
Q Consensus 17 ~~~i~~~G~~~~GKssl~~-~~~~~~~------~~~~~~~~~-~-~~-----------~~~~~~~~~~i~d~~g~~~~~~ 76 (181)
.+||+++|++++|||||+. ++.++.+ ..+.||++. . +. .+......+.+|||+|++. .
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~ 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence 5799999999999999995 6655432 345677752 2 11 1122457899999999875 3
Q ss_pred HHHhhccCCCEEEEEEECCCcccHHHHHH-HHHHHHcCCCCCCCeEEEEEeCCCCCCCCC----------------HHHH
Q 030233 77 LWRHYFRDTLGLTFVVDSSDRERISEARN-ELHQILSDNELSNAALLVFANKQDLPNVMP----------------TAEV 139 (181)
Q Consensus 77 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~D~~~~~~----------------~~~~ 139 (181)
....+++.+|++++|||+++++||+.+.. |+..+.... ++.|+++|+||+|+..... ...+
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~--~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V 157 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC--PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADIL 157 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC--CCCCEEEEEEchhccccccchhhhcccccccccccCCcc
Confidence 45668899999999999999999999974 766664432 4789999999999864210 0111
Q ss_pred HhhhCccccCCccEEEEEeeccCCCCHHHHHHHHHhh
Q 030233 140 ADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNN 176 (181)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~ 176 (181)
........+...+++|++|||++|+|++++|+.+.++
T Consensus 158 ~~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 158 PPETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred CHHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 2222222223455689999999999999999999865
No 105
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.97 E-value=1.4e-29 Score=169.36 Aligned_cols=157 Identities=24% Similarity=0.297 Sum_probs=123.9
Q ss_pred cEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEEE-EEE--CCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEE
Q 030233 18 IKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVEA-VEY--KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVD 93 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~~-~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (181)
+||+++|++|+|||||++++++..+. ...++.+..... ... ....+.+||+||++.+...+..+++.++++++|+|
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 80 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFS 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEE
Confidence 58999999999999999999988754 334444433222 222 34679999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHHH
Q 030233 94 SSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV--MPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLD 171 (181)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 171 (181)
+++++++.....|+..+.......+.|+++|+||+|+... ...++..... ...+.+++++||++|+|++++|+
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l~~ 155 (164)
T cd04139 81 ITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLA-----RQWGVPYVETSAKTRQNVEKAFY 155 (164)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHH-----HHhCCeEEEeeCCCCCCHHHHHH
Confidence 9999999999999988887654568999999999998652 2223222222 11235799999999999999999
Q ss_pred HHHhhhhc
Q 030233 172 WLSNNISV 179 (181)
Q Consensus 172 ~i~~~~~~ 179 (181)
++.+.+.+
T Consensus 156 ~l~~~~~~ 163 (164)
T cd04139 156 DLVREIRQ 163 (164)
T ss_pred HHHHHHHh
Confidence 99988764
No 106
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.97 E-value=9.9e-30 Score=174.71 Aligned_cols=159 Identities=17% Similarity=0.178 Sum_probs=118.4
Q ss_pred cEEEEEcCCCCChHHHHHhhhcCCccc-ccCccceeE--EEEEECC--eEEEEEEcCCChhhH--------HHHHhhccC
Q 030233 18 IKLLMVGLDASGKTTILYKMKLGEIVT-TTPTIGFNV--EAVEYKN--KSFCVWDVGGQNKIR--------ALWRHYFRD 84 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~~~~~~-~~~~~~~~~--~~~~~~~--~~~~i~d~~g~~~~~--------~~~~~~~~~ 84 (181)
++|+++|++|+|||||+++++++.+.. +.||.+... ..+.+.+ ..+.+|||||.+.+. ......++.
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 589999999999999999999988654 566665433 2344444 678899999965431 123345788
Q ss_pred CCEEEEEEECCCcccHHHHHHHHHHHHcCC--CCCCCeEEEEEeCCCCCCCC--CHHHHHhhhCccccCCccEEEEEeec
Q 030233 85 TLGLTFVVDSSDRERISEARNELHQILSDN--ELSNAALLVFANKQDLPNVM--PTAEVADKLELYSLGQRRWSIQSCSA 160 (181)
Q Consensus 85 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (181)
+|++++|||+++++|++.+..|+..+.+.. ...++|+++|+||+|+.... +.++...... +..+++|++|||
T Consensus 81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~e~Sa 156 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVR----KSWKCGYLECSA 156 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHH----HhcCCcEEEecC
Confidence 999999999999999999999988887653 24679999999999995532 2222221111 123568999999
Q ss_pred cCCCCHHHHHHHHHhhhhcc
Q 030233 161 ISGQGLYEGLDWLSNNISVK 180 (181)
Q Consensus 161 ~~~~~i~~l~~~i~~~~~~~ 180 (181)
++|.|++++|+.+.+.+..+
T Consensus 157 k~g~~v~~lf~~i~~~~~~~ 176 (198)
T cd04142 157 KYNWHILLLFKELLISATTR 176 (198)
T ss_pred CCCCCHHHHHHHHHHHhhcc
Confidence 99999999999999876543
No 107
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.97 E-value=1.2e-29 Score=170.27 Aligned_cols=158 Identities=13% Similarity=0.181 Sum_probs=115.4
Q ss_pred cEEEEEcCCCCChHHHHHhhhcCCcccccCcccee-EEE--EEECCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEEC
Q 030233 18 IKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFN-VEA--VEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDS 94 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~ 94 (181)
+||+++|++|+|||||++++.++.++...++.... ... +......+.+|||||.+.+...+...+..+|++++|||+
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~ 80 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYSV 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcccceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEEC
Confidence 48999999999999999999998875544332211 111 222567899999999988888777888999999999999
Q ss_pred CCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH----HHHHhhhCccccCCccEEEEEeeccCCCCHHHHH
Q 030233 95 SDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPT----AEVADKLELYSLGQRRWSIQSCSAISGQGLYEGL 170 (181)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 170 (181)
+++++++.+..+|...++... .+.|+++|+||+|+.+.... +++...... .. ....+++|||++|.|++++|
T Consensus 81 ~~~~s~~~~~~~~~~~i~~~~-~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~-~~~~~~e~Sa~~~~~v~~lf 156 (166)
T cd01893 81 DRPSTLERIRTKWLPLIRRLG-VKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNE--FR-EIETCVECSAKTLINVSEVF 156 (166)
T ss_pred CCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhcccccchhHHHHHHHHHHHH--Hh-cccEEEEeccccccCHHHHH
Confidence 999999998654433333222 47999999999999764432 111111100 01 11279999999999999999
Q ss_pred HHHHhhhhc
Q 030233 171 DWLSNNISV 179 (181)
Q Consensus 171 ~~i~~~~~~ 179 (181)
+.+.+.+..
T Consensus 157 ~~~~~~~~~ 165 (166)
T cd01893 157 YYAQKAVLH 165 (166)
T ss_pred HHHHHHhcC
Confidence 999887754
No 108
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.97 E-value=6.1e-30 Score=178.66 Aligned_cols=154 Identities=17% Similarity=0.146 Sum_probs=116.9
Q ss_pred cEEEEEcCCCCChHHHHHhhhcCCcc--cccCccc--eeEEEEEE--CCeEEEEEEcCCChhhHHHHHhhcc-CCCEEEE
Q 030233 18 IKLLMVGLDASGKTTILYKMKLGEIV--TTTPTIG--FNVEAVEY--KNKSFCVWDVGGQNKIRALWRHYFR-DTLGLTF 90 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~~~~~--~~~~~~~--~~~~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~-~~d~ii~ 90 (181)
+||+++|++|+|||||+++++++.+. .+.++.+ .....+.+ ....+.+||+||++. .....++. .+|++++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~--~~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM--WTEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch--HHHhHHhhcCCCEEEE
Confidence 58999999999999999999887763 4555553 23333444 557899999999882 23445566 8999999
Q ss_pred EEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HHHHHhhhCccccCCccEEEEEeeccCCCCHHH
Q 030233 91 VVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMP--TAEVADKLELYSLGQRRWSIQSCSAISGQGLYE 168 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (181)
|||++++++|.....|+..+.......+.|+++|+||+|+.+... .++... +. ...+++++++||++|.|+++
T Consensus 79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~-~a----~~~~~~~~e~SA~~~~gv~~ 153 (221)
T cd04148 79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRA-CA----VVFDCKFIETSAGLQHNVDE 153 (221)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHH-HH----HHcCCeEEEecCCCCCCHHH
Confidence 999999999999999988876654446799999999999865322 222211 11 22345799999999999999
Q ss_pred HHHHHHhhhh
Q 030233 169 GLDWLSNNIS 178 (181)
Q Consensus 169 l~~~i~~~~~ 178 (181)
+|+++.+.+.
T Consensus 154 l~~~l~~~~~ 163 (221)
T cd04148 154 LLEGIVRQIR 163 (221)
T ss_pred HHHHHHHHHH
Confidence 9999998875
No 109
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.97 E-value=1.4e-29 Score=171.11 Aligned_cols=158 Identities=18% Similarity=0.164 Sum_probs=115.9
Q ss_pred cEEEEEcCCCCChHHHHHhhhcCCccc-ccCccceeE-EEEEEC--CeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEE
Q 030233 18 IKLLMVGLDASGKTTILYKMKLGEIVT-TTPTIGFNV-EAVEYK--NKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVD 93 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~~~~~~-~~~~~~~~~-~~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (181)
+||+++|++|+|||||+++++++.+.. +.++..... ..+... ...+.+|||||++.+...+..+++.+|++++|+|
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~ 80 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFS 80 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEEE
Confidence 589999999999999999999988643 455554222 233343 3567899999999999999999999999999999
Q ss_pred CCCcccHHHHHH-HHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhC---------cccc-CCccEEEEEeeccC
Q 030233 94 SSDRERISEARN-ELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLE---------LYSL-GQRRWSIQSCSAIS 162 (181)
Q Consensus 94 ~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~---------~~~~-~~~~~~~~~~Sa~~ 162 (181)
++++++|+.... |+..+... .++.|+++++||+|+.+............ ...+ .....++++|||++
T Consensus 81 ~~~~~s~~~~~~~~~~~l~~~--~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 158 (174)
T cd04135 81 VVNPASFQNVKEEWVPELKEY--APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALT 158 (174)
T ss_pred CCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCc
Confidence 999999999875 44444333 36899999999999865322111000000 0000 11223699999999
Q ss_pred CCCHHHHHHHHHhhh
Q 030233 163 GQGLYEGLDWLSNNI 177 (181)
Q Consensus 163 ~~~i~~l~~~i~~~~ 177 (181)
|.|++++|+.+.+.+
T Consensus 159 ~~gi~~~f~~~~~~~ 173 (174)
T cd04135 159 QKGLKTVFDEAILAI 173 (174)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999998865
No 110
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.97 E-value=3.9e-30 Score=173.69 Aligned_cols=156 Identities=19% Similarity=0.182 Sum_probs=112.6
Q ss_pred cEEEEEcCCCCChHHHHHhhhcCCccc-ccCccceeE-EEEEEC--CeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEE
Q 030233 18 IKLLMVGLDASGKTTILYKMKLGEIVT-TTPTIGFNV-EAVEYK--NKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVD 93 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~~~~~~-~~~~~~~~~-~~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (181)
+|++++|++|+|||||+.++.++.+.. +.+|..... ..+... ...+.+|||||++.+...+..+++.+|++++|||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d 80 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFS 80 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEEE
Confidence 589999999999999999999877544 444432111 123333 4678899999999999999999999999999999
Q ss_pred CCCcccHHHHH-HHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH---------HHHHhhhCccccCCcc-EEEEEeeccC
Q 030233 94 SSDRERISEAR-NELHQILSDNELSNAALLVFANKQDLPNVMPT---------AEVADKLELYSLGQRR-WSIQSCSAIS 162 (181)
Q Consensus 94 ~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~---------~~~~~~~~~~~~~~~~-~~~~~~Sa~~ 162 (181)
++++++|+... .|+..+... .++.|+++++||+|+...... ..+........+...+ ..|+++||++
T Consensus 81 ~~~~~sf~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~ 158 (173)
T cd04130 81 VVNPSSFQNISEKWIPEIRKH--NPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALT 158 (173)
T ss_pred CCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCC
Confidence 99999999986 466555433 247999999999998643210 0000000001111222 3799999999
Q ss_pred CCCHHHHHHHHHh
Q 030233 163 GQGLYEGLDWLSN 175 (181)
Q Consensus 163 ~~~i~~l~~~i~~ 175 (181)
|.|++++|+.+.-
T Consensus 159 ~~~v~~lf~~~~~ 171 (173)
T cd04130 159 QKNLKEVFDTAIL 171 (173)
T ss_pred CCCHHHHHHHHHh
Confidence 9999999998763
No 111
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.97 E-value=1.6e-29 Score=168.70 Aligned_cols=154 Identities=22% Similarity=0.333 Sum_probs=119.7
Q ss_pred cEEEEEcCCCCChHHHHHhhhcCCccc-ccCcccee--EEEEEE--CCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEE
Q 030233 18 IKLLMVGLDASGKTTILYKMKLGEIVT-TTPTIGFN--VEAVEY--KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVV 92 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~~~~~~-~~~~~~~~--~~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (181)
+||+++|++|+|||||+++++++.+.. ..++.... ...+.. ....+.+||+||++.+...++.+++.+|++++|+
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 589999999999999999999887543 33343322 223333 3357899999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HHHHHhhhCccccCCccEEEEEeeccCCCCHHHHH
Q 030233 93 DSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMP--TAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGL 170 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 170 (181)
|+++++++.....|+..+..... .+.|+++++||+|+..... .+++.... ...+.+++++||++|+|+++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~gi~~~~ 154 (162)
T cd04123 81 DITDADSFQKVKKWIKELKQMRG-NNISLVIVGNKIDLERQRVVSKSEAEEYA-----KSVGAKHFETSAKTGKGIEELF 154 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECcccccccCCCHHHHHHHH-----HHcCCEEEEEeCCCCCCHHHHH
Confidence 99999999999888887765433 3799999999999875322 23333322 1234578999999999999999
Q ss_pred HHHHhhh
Q 030233 171 DWLSNNI 177 (181)
Q Consensus 171 ~~i~~~~ 177 (181)
+++.+.+
T Consensus 155 ~~l~~~~ 161 (162)
T cd04123 155 LSLAKRM 161 (162)
T ss_pred HHHHHHh
Confidence 9998765
No 112
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2.6e-31 Score=168.67 Aligned_cols=159 Identities=25% Similarity=0.430 Sum_probs=131.0
Q ss_pred cEEEEEcCCCCChHHHHHhhhcCCcccc-cCccceeEEE--EEE-----------CCeEEEEEEcCCChhhHHHHHhhcc
Q 030233 18 IKLLMVGLDASGKTTILYKMKLGEIVTT-TPTIGFNVEA--VEY-----------KNKSFCVWDVGGQNKIRALWRHYFR 83 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~~~~~~~-~~~~~~~~~~--~~~-----------~~~~~~i~d~~g~~~~~~~~~~~~~ 83 (181)
++.+.+|++|+||||++.++..+.+... ..|.|++.+. +-+ ..+.+++|||+|+++|+++...+++
T Consensus 10 ikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAFfR 89 (219)
T KOG0081|consen 10 IKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAFFR 89 (219)
T ss_pred HHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHHHH
Confidence 5778999999999999999998887554 4556655443 333 2367999999999999999999999
Q ss_pred CCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCC
Q 030233 84 DTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISG 163 (181)
Q Consensus 84 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (181)
++-+++++||++++.||-+++.|+..+..+..-.++.+++++||+|+.+ .+++.+......+...++|||++||-+|
T Consensus 90 DAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~---~R~Vs~~qa~~La~kyglPYfETSA~tg 166 (219)
T KOG0081|consen 90 DAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLED---QRVVSEDQAAALADKYGLPYFETSACTG 166 (219)
T ss_pred hhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhh---hhhhhHHHHHHHHHHhCCCeeeeccccC
Confidence 9999999999999999999999999998887667888999999999976 4444444444444567789999999999
Q ss_pred CCHHHHHHHHHhhhhc
Q 030233 164 QGLYEGLDWLSNNISV 179 (181)
Q Consensus 164 ~~i~~l~~~i~~~~~~ 179 (181)
.|+++..+.+...+.+
T Consensus 167 ~Nv~kave~LldlvM~ 182 (219)
T KOG0081|consen 167 TNVEKAVELLLDLVMK 182 (219)
T ss_pred cCHHHHHHHHHHHHHH
Confidence 9999998888776544
No 113
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.97 E-value=1.7e-28 Score=162.94 Aligned_cols=152 Identities=24% Similarity=0.404 Sum_probs=124.2
Q ss_pred cEEEEEcCCCCChHHHHHhhhcCCcccc-cCccceeEEEEEE----CCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEE
Q 030233 18 IKLLMVGLDASGKTTILYKMKLGEIVTT-TPTIGFNVEAVEY----KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVV 92 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~~~~~~~-~~~~~~~~~~~~~----~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (181)
+||+++|++++|||||++++.++.+... .++.+.+...... ....+.+||+||++.+...+..+++++|++++|+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 5899999999999999999999886554 6677766555433 3478899999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCC--CCCCHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHH
Q 030233 93 DSSDRERISEARNELHQILSDNELSNAALLVFANKQDLP--NVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGL 170 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 170 (181)
|+++++++..+..|+..+..... ...|+++++||+|+. .....+++..... ..+.+++++||++|.|+++++
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i~~~~ 154 (159)
T cd00154 81 DITNRESFENLDKWLKELKEYAP-ENIPIILVGNKIDLEDQRQVSTEEAQQFAK-----ENGLLFFETSAKTGENVEELF 154 (159)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCCcEEEEEEcccccccccccHHHHHHHHH-----HcCCeEEEEecCCCCCHHHHH
Confidence 99999999999998888766532 579999999999995 3334444444332 245689999999999999999
Q ss_pred HHHHh
Q 030233 171 DWLSN 175 (181)
Q Consensus 171 ~~i~~ 175 (181)
++|.+
T Consensus 155 ~~i~~ 159 (159)
T cd00154 155 QSLAE 159 (159)
T ss_pred HHHhC
Confidence 99863
No 114
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.97 E-value=7.8e-30 Score=170.95 Aligned_cols=155 Identities=17% Similarity=0.210 Sum_probs=114.6
Q ss_pred EEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeE-EEEEE--CCeEEEEEEcCCChhh-HHHHHhhccCCCEEEEEEE
Q 030233 19 KLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNV-EAVEY--KNKSFCVWDVGGQNKI-RALWRHYFRDTLGLTFVVD 93 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~-~~~~~--~~~~~~i~d~~g~~~~-~~~~~~~~~~~d~ii~v~d 93 (181)
+|+++|++|+|||||+++++.+.+. .+.++.+... ..+.. ....+.+||+||++.+ ......+++.+|++++|+|
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d 80 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVYS 80 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEEE
Confidence 5899999999999999999987753 4455543222 22333 3456889999998852 3456678889999999999
Q ss_pred CCCcccHHHHHHHHHHHHcCCC-CCCCeEEEEEeCCCCCCCC--CHHHHHhhhCccccCCccEEEEEeeccCC-CCHHHH
Q 030233 94 SSDRERISEARNELHQILSDNE-LSNAALLVFANKQDLPNVM--PTAEVADKLELYSLGQRRWSIQSCSAISG-QGLYEG 169 (181)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~-~~i~~l 169 (181)
++++++|+.+..|+..+..... ..+.|+++|+||+|+.+.. +.++..... ...+.+|+++||++| .|++++
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~e~Sa~~~~~~v~~~ 155 (165)
T cd04146 81 ITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLA-----SELGCLFFEVSAAEDYDGVHSV 155 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHH-----HHcCCEEEEeCCCCCchhHHHH
Confidence 9999999999888877655432 3579999999999985432 222222221 122357999999999 599999
Q ss_pred HHHHHhhhh
Q 030233 170 LDWLSNNIS 178 (181)
Q Consensus 170 ~~~i~~~~~ 178 (181)
|+++++.+.
T Consensus 156 f~~l~~~~~ 164 (165)
T cd04146 156 FHELCREVR 164 (165)
T ss_pred HHHHHHHHh
Confidence 999998765
No 115
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.97 E-value=1.1e-28 Score=169.94 Aligned_cols=156 Identities=17% Similarity=0.209 Sum_probs=121.7
Q ss_pred EEEEEcCCCCChHHHHHhhhcCCccc-ccCccc-eeEEEEEECC--eEEEEEEcCCChhhHHHHHhhccCCCEEEEEEEC
Q 030233 19 KLLMVGLDASGKTTILYKMKLGEIVT-TTPTIG-FNVEAVEYKN--KSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDS 94 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~~~~~~-~~~~~~-~~~~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~ 94 (181)
||+++|++|+|||||+++++++.+.. +.++.. .....+.+.+ ..+.+||+||+..+..++..++..+|++++|||+
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~ 80 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAV 80 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEEC
Confidence 58999999999999999999988654 344443 3333444444 6889999999999999988999999999999999
Q ss_pred CCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC---HHHHHhhhCccccCCccEEEEEeeccCCCCHHHHHH
Q 030233 95 SDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMP---TAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLD 171 (181)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 171 (181)
+++++++....|+..+.......+.|+++|+||+|+.+... .+....... ...+..++++||++|.|++++|+
T Consensus 81 ~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~----~~~~~~~~~~Sa~~g~gv~~l~~ 156 (198)
T cd04147 81 DDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVE----LDWNCGFVETSAKDNENVLEVFK 156 (198)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHH----hhcCCcEEEecCCCCCCHHHHHH
Confidence 99999999999988887765446799999999999865211 112111111 12335799999999999999999
Q ss_pred HHHhhhh
Q 030233 172 WLSNNIS 178 (181)
Q Consensus 172 ~i~~~~~ 178 (181)
++.+.+.
T Consensus 157 ~l~~~~~ 163 (198)
T cd04147 157 ELLRQAN 163 (198)
T ss_pred HHHHHhh
Confidence 9998764
No 116
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.96 E-value=8.9e-29 Score=166.40 Aligned_cols=157 Identities=20% Similarity=0.297 Sum_probs=120.4
Q ss_pred CccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeE--EEEEECC--eEEEEEEcCCChhhHHHHHhhccCCCEEEE
Q 030233 16 CRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNV--EAVEYKN--KSFCVWDVGGQNKIRALWRHYFRDTLGLTF 90 (181)
Q Consensus 16 ~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~--~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~ 90 (181)
..++|+++|++|+|||||++++.++.+. ...++.+... ..+.+.+ ..+.+||+||++.+...+..++..+|++++
T Consensus 6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 85 (169)
T cd04114 6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALIL 85 (169)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEE
Confidence 4589999999999999999999977643 4556655332 3344444 568999999999999998999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH-HHHHhhhCccccCCccEEEEEeeccCCCCHHHH
Q 030233 91 VVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPT-AEVADKLELYSLGQRRWSIQSCSAISGQGLYEG 169 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 169 (181)
|+|+.+++++.....|+..+... ...+.|+++++||+|+.+.... ......+. .....+++++||++|.|++++
T Consensus 86 v~d~~~~~s~~~~~~~~~~l~~~-~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~----~~~~~~~~~~Sa~~~~gv~~l 160 (169)
T cd04114 86 TYDITCEESFRCLPEWLREIEQY-ANNKVITILVGNKIDLAERREVSQQRAEEFS----DAQDMYYLETSAKESDNVEKL 160 (169)
T ss_pred EEECcCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECcccccccccCHHHHHHHH----HHcCCeEEEeeCCCCCCHHHH
Confidence 99999999999888888766443 2247999999999998653221 22222221 112257999999999999999
Q ss_pred HHHHHhhh
Q 030233 170 LDWLSNNI 177 (181)
Q Consensus 170 ~~~i~~~~ 177 (181)
|+++.+.+
T Consensus 161 ~~~i~~~~ 168 (169)
T cd04114 161 FLDLACRL 168 (169)
T ss_pred HHHHHHHh
Confidence 99998754
No 117
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.96 E-value=2.6e-30 Score=164.01 Aligned_cols=162 Identities=21% Similarity=0.311 Sum_probs=127.9
Q ss_pred CCCccEEEEEcCCCCChHHHHHhhhcCCcccc-cCccc--eeEEEEEE--CCeEEEEEEcCCChhhHHHHHhhccCCCEE
Q 030233 14 PQCRIKLLMVGLDASGKTTILYKMKLGEIVTT-TPTIG--FNVEAVEY--KNKSFCVWDVGGQNKIRALWRHYFRDTLGL 88 (181)
Q Consensus 14 ~~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~-~~~~~--~~~~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~d~i 88 (181)
+..+||++++|..-+|||||+-|++.+.|... ..|+. +..+++.+ ...++.||||+|+++|.++-+-+|++++++
T Consensus 10 ~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGa 89 (218)
T KOG0088|consen 10 KSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGA 89 (218)
T ss_pred CceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCce
Confidence 34579999999999999999999998876532 23322 33333434 456889999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCCCHHH
Q 030233 89 TFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYE 168 (181)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (181)
++|||+++++||+.+..|..++..... ..+-+++|+||+|+.. .+.+........+..-+..|+++||+.+.||.+
T Consensus 90 lLVyDITDrdSFqKVKnWV~Elr~mlG-nei~l~IVGNKiDLEe---eR~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~e 165 (218)
T KOG0088|consen 90 LLVYDITDRDSFQKVKNWVLELRTMLG-NEIELLIVGNKIDLEE---ERQVTRQEAEAYAESVGALYMETSAKDNVGISE 165 (218)
T ss_pred EEEEeccchHHHHHHHHHHHHHHHHhC-CeeEEEEecCcccHHH---hhhhhHHHHHHHHHhhchhheecccccccCHHH
Confidence 999999999999999999999876533 5688999999999865 222333222333345566799999999999999
Q ss_pred HHHHHHhhhhc
Q 030233 169 GLDWLSNNISV 179 (181)
Q Consensus 169 l~~~i~~~~~~ 179 (181)
+|+.+...+.+
T Consensus 166 lFe~Lt~~MiE 176 (218)
T KOG0088|consen 166 LFESLTAKMIE 176 (218)
T ss_pred HHHHHHHHHHH
Confidence 99999887654
No 118
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.96 E-value=2.7e-28 Score=165.73 Aligned_cols=157 Identities=20% Similarity=0.262 Sum_probs=123.8
Q ss_pred cEEEEEcCCCCChHHHHHhhhcCCccc-ccCcccee-EEEEEEC--CeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEE
Q 030233 18 IKLLMVGLDASGKTTILYKMKLGEIVT-TTPTIGFN-VEAVEYK--NKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVD 93 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~~~~~~-~~~~~~~~-~~~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (181)
.||+++|++|+|||||++++.++.+.. ..++.+.. ...+... ...+.+||+||++++...+..++..++++++|||
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 81 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYS 81 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEE
Confidence 589999999999999999999887643 44555432 3334443 3567899999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHHH
Q 030233 94 SSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVM--PTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLD 171 (181)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 171 (181)
+++..+++....++..+++.....+.|+++++||+|+.... ..++..... ...+.+++++||++|+|+.++|+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gv~~l~~ 156 (180)
T cd04137 82 VTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELA-----ESWGAAFLESSARENENVEEAFE 156 (180)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHH-----HHcCCeEEEEeCCCCCCHHHHHH
Confidence 99999999999999988876555678999999999986422 222222211 12235799999999999999999
Q ss_pred HHHhhhhc
Q 030233 172 WLSNNISV 179 (181)
Q Consensus 172 ~i~~~~~~ 179 (181)
++.+.+..
T Consensus 157 ~l~~~~~~ 164 (180)
T cd04137 157 LLIEEIEK 164 (180)
T ss_pred HHHHHHHH
Confidence 99988754
No 119
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.96 E-value=1.8e-28 Score=165.77 Aligned_cols=159 Identities=23% Similarity=0.286 Sum_probs=116.5
Q ss_pred ccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeE-EEEEE--CCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEE
Q 030233 17 RIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNV-EAVEY--KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVV 92 (181)
Q Consensus 17 ~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~-~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (181)
+.||+++|++|||||||+++++++.+. .+.+|.+... ..+.. ....+.+|||+|++.+...+...+..+|++++||
T Consensus 1 ~~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (175)
T cd01870 1 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 80 (175)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence 368999999999999999999998865 3556665443 23344 3457899999999999988888889999999999
Q ss_pred ECCCcccHHHHHH-HHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH-HHHHhhhC--------cccc-CCccEEEEEeecc
Q 030233 93 DSSDRERISEARN-ELHQILSDNELSNAALLVFANKQDLPNVMPT-AEVADKLE--------LYSL-GQRRWSIQSCSAI 161 (181)
Q Consensus 93 d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~D~~~~~~~-~~~~~~~~--------~~~~-~~~~~~~~~~Sa~ 161 (181)
|+++++++..+.. |...+... ..+.|+++|+||+|+.+.... +++..... .... .....++++|||+
T Consensus 81 ~~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~ 158 (175)
T cd01870 81 SIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAK 158 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEeccc
Confidence 9999999988865 55544432 257899999999998653211 11110000 0000 1123479999999
Q ss_pred CCCCHHHHHHHHHhhh
Q 030233 162 SGQGLYEGLDWLSNNI 177 (181)
Q Consensus 162 ~~~~i~~l~~~i~~~~ 177 (181)
+|.|++++|+++.+.+
T Consensus 159 ~~~~v~~lf~~l~~~~ 174 (175)
T cd01870 159 TKEGVREVFEMATRAA 174 (175)
T ss_pred cCcCHHHHHHHHHHHh
Confidence 9999999999998764
No 120
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.96 E-value=6.8e-29 Score=167.19 Aligned_cols=157 Identities=20% Similarity=0.255 Sum_probs=113.4
Q ss_pred cEEEEEcCCCCChHHHHHhhhcCCc-ccccCccceeEE-EEEE--CCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEE
Q 030233 18 IKLLMVGLDASGKTTILYKMKLGEI-VTTTPTIGFNVE-AVEY--KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVD 93 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~~~~-~~~~~~~~~~~~-~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (181)
+||+++|++|+|||||++++.++.+ ..+.++...... .... ....+.+||+||++.+.......++.+|++++|||
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 80 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFS 80 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEEE
Confidence 5899999999999999999999886 334444432222 1222 45679999999999888888888899999999999
Q ss_pred CCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHH--------HHhhhCcccc-CCccEEEEEeeccCCC
Q 030233 94 SSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAE--------VADKLELYSL-GQRRWSIQSCSAISGQ 164 (181)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~--------~~~~~~~~~~-~~~~~~~~~~Sa~~~~ 164 (181)
+++++++......+...+.... .+.|+++|+||+|+.+...... +......... .....+++++||++|+
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~ 159 (171)
T cd00157 81 VDSPSSFENVKTKWIPEIRHYC-PNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQE 159 (171)
T ss_pred CCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCCC
Confidence 9999999887664444333322 4799999999999876443211 0011111111 1123389999999999
Q ss_pred CHHHHHHHHHh
Q 030233 165 GLYEGLDWLSN 175 (181)
Q Consensus 165 ~i~~l~~~i~~ 175 (181)
|++++|+++.+
T Consensus 160 gi~~l~~~i~~ 170 (171)
T cd00157 160 GVKEVFEEAIR 170 (171)
T ss_pred CHHHHHHHHhh
Confidence 99999999875
No 121
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.96 E-value=1.6e-28 Score=163.53 Aligned_cols=154 Identities=23% Similarity=0.307 Sum_probs=120.2
Q ss_pred EEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEE-EEEEC--CeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEEC
Q 030233 19 KLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVE-AVEYK--NKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDS 94 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~-~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~ 94 (181)
||+++|++|+|||||++++.+..+. ...++.+.... .+... ...+.+||+||++.+...+..+++.+|++++|+|+
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 80 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSI 80 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEEC
Confidence 6899999999999999999987643 33444442222 23333 46789999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHHHH
Q 030233 95 SDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVM--PTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDW 172 (181)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 172 (181)
++++++.....++..+.........|+++++||+|+.... ..+....... ..+.+++++||++|.|++++|++
T Consensus 81 ~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~S~~~~~~i~~l~~~ 155 (160)
T cd00876 81 TDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAK-----EWGCPFIETSAKDNINIDEVFKL 155 (160)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHH-----HcCCcEEEeccCCCCCHHHHHHH
Confidence 9999999999999888776544589999999999987522 2222222221 12257999999999999999999
Q ss_pred HHhhh
Q 030233 173 LSNNI 177 (181)
Q Consensus 173 i~~~~ 177 (181)
|.+.+
T Consensus 156 l~~~i 160 (160)
T cd00876 156 LVREI 160 (160)
T ss_pred HHhhC
Confidence 98764
No 122
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.96 E-value=1.3e-27 Score=166.69 Aligned_cols=161 Identities=23% Similarity=0.321 Sum_probs=128.9
Q ss_pred CCCCccEEEEEcCCCCChHHHHHhhhcCCc-ccccCccceeEEEEEE----CCeEEEEEEcCCChhhHHHHHhhccCCCE
Q 030233 13 FPQCRIKLLMVGLDASGKTTILYKMKLGEI-VTTTPTIGFNVEAVEY----KNKSFCVWDVGGQNKIRALWRHYFRDTLG 87 (181)
Q Consensus 13 ~~~~~~~i~~~G~~~~GKssl~~~~~~~~~-~~~~~~~~~~~~~~~~----~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ 87 (181)
.+...+|++++|++|||||||+++++.+.+ ..+.+|.+.+.....+ ....+.+||++|++.+...+..++..+++
T Consensus 5 ~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~ 84 (215)
T PTZ00132 5 DEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQC 84 (215)
T ss_pred cCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCE
Confidence 455679999999999999999998877765 5677888877665443 45789999999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCCCHH
Q 030233 88 LTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLY 167 (181)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (181)
+++|||++++.++..+..|+..+.... .+.|+++++||+|+.+.....+..... ...++.++++||++|.|++
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~i~lv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~~~~v~ 157 (215)
T PTZ00132 85 AIIMFDVTSRITYKNVPNWHRDIVRVC--ENIPIVLVGNKVDVKDRQVKARQITFH-----RKKNLQYYDISAKSNYNFE 157 (215)
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECccCccccCCHHHHHHH-----HHcCCEEEEEeCCCCCCHH
Confidence 999999999999999999988876442 478999999999986432212111111 2234579999999999999
Q ss_pred HHHHHHHhhhhcc
Q 030233 168 EGLDWLSNNISVK 180 (181)
Q Consensus 168 ~l~~~i~~~~~~~ 180 (181)
++|.+|++.+...
T Consensus 158 ~~f~~ia~~l~~~ 170 (215)
T PTZ00132 158 KPFLWLARRLTND 170 (215)
T ss_pred HHHHHHHHHHhhc
Confidence 9999999887653
No 123
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=4.6e-29 Score=160.56 Aligned_cols=180 Identities=36% Similarity=0.664 Sum_probs=158.4
Q ss_pred CcchHHHHhhhhCCCCccEEEEEcCCCCChHHHHHhhhcCC--------cccccCccceeEEEEEECCeEEEEEEcCCCh
Q 030233 1 MGKLISRLAKRFFPQCRIKLLMVGLDASGKTTILYKMKLGE--------IVTTTPTIGFNVEAVEYKNKSFCVWDVGGQN 72 (181)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~i~~~G~~~~GKssl~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~ 72 (181)
|=.+++.+++.++.+..+.++++|..++|||||+.+.-... .....+|.|.+..++......+.+||.+|++
T Consensus 1 m~tl~~gl~~~~~~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~~~~l~fwdlgGQe 80 (197)
T KOG0076|consen 1 MFTLMSGLYKYMFKKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVCNAPLSFWDLGGQE 80 (197)
T ss_pred ChhHHHHHHHHHhhhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeeccceeEEEEcCChH
Confidence 55788999999999999999999999999999998774322 2334678899999999999999999999999
Q ss_pred hhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCc-cccCCc
Q 030233 73 KIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLEL-YSLGQR 151 (181)
Q Consensus 73 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~-~~~~~~ 151 (181)
..+++|..+|..+|++|+++|+++++.|+.....++.++......+.|+++.+||.|+.+..+..++...++. .....+
T Consensus 81 ~lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~~e~~~~r 160 (197)
T KOG0076|consen 81 SLRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGLAELIPRR 160 (197)
T ss_pred HHHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhhhhhhcCCc
Confidence 9999999999999999999999999999999999999888766679999999999999998888888887763 333556
Q ss_pred cEEEEEeeccCCCCHHHHHHHHHhhhhcc
Q 030233 152 RWSIQSCSAISGQGLYEGLDWLSNNISVK 180 (181)
Q Consensus 152 ~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~ 180 (181)
..++.++||.+|+||++-.+|+...+.++
T Consensus 161 d~~~~pvSal~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 161 DNPFQPVSALTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred cCccccchhhhcccHHHHHHHHHHHHhhc
Confidence 77899999999999999999999887654
No 124
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.2e-28 Score=154.01 Aligned_cols=181 Identities=49% Similarity=0.813 Sum_probs=163.6
Q ss_pred CcchHHHHhhhhCCC-CccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEECCeEEEEEEcCCChhhHHHHH
Q 030233 1 MGKLISRLAKRFFPQ-CRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWR 79 (181)
Q Consensus 1 ~~~~~~~~~~~~~~~-~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~ 79 (181)
|+-.++.+++.++.. +..+++++|-.|+|||++..++.-++.....||++++...+.+.+.++++||.+|+...+-.|.
T Consensus 1 m~~g~~s~f~~L~g~e~e~rililgldGaGkttIlyrlqvgevvttkPtigfnve~v~yKNLk~~vwdLggqtSirPyWR 80 (182)
T KOG0072|consen 1 MGGGFSSLFKALQGPEREMRILILGLDGAGKTTILYRLQVGEVVTTKPTIGFNVETVPYKNLKFQVWDLGGQTSIRPYWR 80 (182)
T ss_pred CCchHHHHHHHhcCCccceEEEEeeccCCCeeEEEEEcccCcccccCCCCCcCccccccccccceeeEccCcccccHHHH
Confidence 566677777776644 8999999999999999999999888888889999999999999999999999999999999999
Q ss_pred hhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEee
Q 030233 80 HYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCS 159 (181)
Q Consensus 80 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (181)
-++.+.+.+|||+|.+|++.+......+..++++....+..+++++||.|........++...+.+...+.+.+.++++|
T Consensus 81 cYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tS 160 (182)
T KOG0072|consen 81 CYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTS 160 (182)
T ss_pred HHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEEeec
Confidence 99999999999999999998888888888888887777888999999999988788888888888888888889999999
Q ss_pred ccCCCCHHHHHHHHHhhhhccC
Q 030233 160 AISGQGLYEGLDWLSNNISVKN 181 (181)
Q Consensus 160 a~~~~~i~~l~~~i~~~~~~~~ 181 (181)
|.+|+|+++..+|+.+-+..++
T Consensus 161 A~kg~Gld~~~DWL~~~l~~~~ 182 (182)
T KOG0072|consen 161 AVKGEGLDPAMDWLQRPLKSRQ 182 (182)
T ss_pred cccccCCcHHHHHHHHHHhccC
Confidence 9999999999999999887764
No 125
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.96 E-value=2.5e-28 Score=166.43 Aligned_cols=161 Identities=21% Similarity=0.253 Sum_probs=132.7
Q ss_pred CccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEEE-EEE--CCeEEEEEEcCCChhhHHHHHhhccCCCEEEEE
Q 030233 16 CRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVEA-VEY--KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFV 91 (181)
Q Consensus 16 ~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~~-~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v 91 (181)
+.+++.++|.+|+|||+|..++..+.+. .+.||++..+.. +.. +...+.|+||+|++.+..+...+++..|++++|
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lV 81 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLV 81 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCccccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEE
Confidence 4689999999999999999999999865 468888754443 333 557889999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHHH
Q 030233 92 VDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLD 171 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 171 (181)
|+++++.||+.+..++..+.+......+|+++||||+|+... .++........+....++|+|+||+.+.+++++|.
T Consensus 82 ysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~---R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~ 158 (196)
T KOG0395|consen 82 YSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERE---RQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFY 158 (196)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhc---cccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHH
Confidence 999999999999999999977666677999999999999762 22222222222455666799999999999999999
Q ss_pred HHHhhhhc
Q 030233 172 WLSNNISV 179 (181)
Q Consensus 172 ~i~~~~~~ 179 (181)
.+.+.+..
T Consensus 159 ~L~r~~~~ 166 (196)
T KOG0395|consen 159 ELVREIRL 166 (196)
T ss_pred HHHHHHHh
Confidence 99987764
No 126
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.96 E-value=4.7e-30 Score=158.56 Aligned_cols=156 Identities=21% Similarity=0.312 Sum_probs=122.9
Q ss_pred EEEcCCCCChHHHHHhhhcCCccc--ccCccceeEEEEEE----CCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEEC
Q 030233 21 LMVGLDASGKTTILYKMKLGEIVT--TTPTIGFNVEAVEY----KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDS 94 (181)
Q Consensus 21 ~~~G~~~~GKssl~~~~~~~~~~~--~~~~~~~~~~~~~~----~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~ 94 (181)
+++|++++|||+|+-|+..+.+.. -.+|.|++++..-+ ...++++|||+|++++++....+++++|+++++||+
T Consensus 1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi 80 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI 80 (192)
T ss_pred CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence 478999999999999998887543 34667766655333 457899999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHHHHHH
Q 030233 95 SDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLS 174 (181)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~ 174 (181)
.|+.||++.+.|+..+-+. ....+.+.+++||||+..+ +.+........+...+++|+++||++|.|++..|-.|+
T Consensus 81 ankasfdn~~~wlsei~ey-~k~~v~l~llgnk~d~a~e---r~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia 156 (192)
T KOG0083|consen 81 ANKASFDNCQAWLSEIHEY-AKEAVALMLLGNKCDLAHE---RAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIA 156 (192)
T ss_pred ccchhHHHHHHHHHHHHHH-HHhhHhHhhhccccccchh---hccccchHHHHHHHHCCCceeccccccccHhHHHHHHH
Confidence 9999999999999888543 2246788999999998542 11222222222234556899999999999999999999
Q ss_pred hhhhcc
Q 030233 175 NNISVK 180 (181)
Q Consensus 175 ~~~~~~ 180 (181)
+.+.+.
T Consensus 157 ~~l~k~ 162 (192)
T KOG0083|consen 157 EELKKL 162 (192)
T ss_pred HHHHHh
Confidence 887654
No 127
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.95 E-value=8.6e-28 Score=164.13 Aligned_cols=160 Identities=20% Similarity=0.259 Sum_probs=113.8
Q ss_pred ccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEE-EEEEC--CeEEEEEEcCCChhhHHHHHhhccCCCEEEEEE
Q 030233 17 RIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVE-AVEYK--NKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVV 92 (181)
Q Consensus 17 ~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~-~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (181)
+.|++++|++|+|||||++++..+.+. .+.++...... .+... ...+.+||++|++.+....+..+..++++++||
T Consensus 1 ~~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~ 80 (187)
T cd04129 1 RRKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF 80 (187)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence 358999999999999999999877654 33444433322 23333 356899999999888877777888999999999
Q ss_pred ECCCcccHHHHHH-HHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHH-------HHHhhhCccccCCc-cEEEEEeeccCC
Q 030233 93 DSSDRERISEARN-ELHQILSDNELSNAALLVFANKQDLPNVMPTA-------EVADKLELYSLGQR-RWSIQSCSAISG 163 (181)
Q Consensus 93 d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~-------~~~~~~~~~~~~~~-~~~~~~~Sa~~~ 163 (181)
|++++++++.+.. |+..+.... ++.|+++|+||+|+.+..... .+............ ..+|++|||++|
T Consensus 81 ~i~~~~s~~~~~~~~~~~i~~~~--~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~ 158 (187)
T cd04129 81 AVDTPDSLENVRTKWIEEVRRYC--PNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTG 158 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCC
Confidence 9999999999875 666664432 479999999999985421100 00000000001112 237999999999
Q ss_pred CCHHHHHHHHHhhhh
Q 030233 164 QGLYEGLDWLSNNIS 178 (181)
Q Consensus 164 ~~i~~l~~~i~~~~~ 178 (181)
.|++++|+++.+++.
T Consensus 159 ~~v~~~f~~l~~~~~ 173 (187)
T cd04129 159 EGVDDVFEAATRAAL 173 (187)
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999997654
No 128
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.95 E-value=1.7e-26 Score=155.09 Aligned_cols=153 Identities=18% Similarity=0.181 Sum_probs=106.2
Q ss_pred cEEEEEcCCCCChHHHHHhhhcCCcccc---cCccceeEEEEEECCeEEEEEEcCCChhh----H-----HHHHhhccCC
Q 030233 18 IKLLMVGLDASGKTTILYKMKLGEIVTT---TPTIGFNVEAVEYKNKSFCVWDVGGQNKI----R-----ALWRHYFRDT 85 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~i~d~~g~~~~----~-----~~~~~~~~~~ 85 (181)
.+|+++|++|+|||||++++.+..+... ..|...........+..+.+|||||.... + .........+
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~ 80 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHLR 80 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhcc
Confidence 3789999999999999999998875321 12334444445556789999999997320 0 1111112336
Q ss_pred CEEEEEEECCCcccH--HHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCC
Q 030233 86 LGLTFVVDSSDRERI--SEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISG 163 (181)
Q Consensus 86 d~ii~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (181)
|++++|+|++++.++ +....|+..+.... .+.|+++|+||+|+.+.....+.... .....++++++||++|
T Consensus 81 d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~--~~~pvilv~NK~Dl~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~ 153 (168)
T cd01897 81 AAVLFLFDPSETCGYSLEEQLSLFEEIKPLF--KNKPVIVVLNKIDLLTFEDLSEIEEE-----EELEGEEVLKISTLTE 153 (168)
T ss_pred CcEEEEEeCCcccccchHHHHHHHHHHHhhc--CcCCeEEEEEccccCchhhHHHHHHh-----hhhccCceEEEEeccc
Confidence 899999999987654 55555666654331 47999999999999764333321111 1234567999999999
Q ss_pred CCHHHHHHHHHhhh
Q 030233 164 QGLYEGLDWLSNNI 177 (181)
Q Consensus 164 ~~i~~l~~~i~~~~ 177 (181)
+|++++|+++.+.+
T Consensus 154 ~gi~~l~~~l~~~~ 167 (168)
T cd01897 154 EGVDEVKNKACELL 167 (168)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999998875
No 129
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.95 E-value=1e-26 Score=159.62 Aligned_cols=145 Identities=19% Similarity=0.298 Sum_probs=108.2
Q ss_pred cEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEE--EEEE-------CCeEEEEEEcCCChhhHHHHHhhccCCCE
Q 030233 18 IKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVE--AVEY-------KNKSFCVWDVGGQNKIRALWRHYFRDTLG 87 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~--~~~~-------~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ 87 (181)
+||+++|++++|||||+++++++.+. .+.+|++.+.. .+.+ ....+.+|||+|++.+..++..+++.+|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 58999999999999999999998864 45677774433 3333 24679999999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHcCC------------------CCCCCeEEEEEeCCCCCCC--CCHHHHHhhhCccc
Q 030233 88 LTFVVDSSDRERISEARNELHQILSDN------------------ELSNAALLVFANKQDLPNV--MPTAEVADKLELYS 147 (181)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~~~~~~------------------~~~~~piilv~nK~D~~~~--~~~~~~~~~~~~~~ 147 (181)
+|+|||+++++|++.+..|+..+.+.. ...++|+++|+||+|+.++ .+.+..... ....
T Consensus 81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~-~~~i 159 (202)
T cd04102 81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTA-RGFV 159 (202)
T ss_pred EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhH-hhhH
Confidence 999999999999999999998886531 1246899999999998653 122211111 1111
Q ss_pred cCCccEEEEEeeccCC
Q 030233 148 LGQRRWSIQSCSAISG 163 (181)
Q Consensus 148 ~~~~~~~~~~~Sa~~~ 163 (181)
+...+.+.++.+|.++
T Consensus 160 a~~~~~~~i~~~c~~~ 175 (202)
T cd04102 160 AEQGNAEEINLNCTNG 175 (202)
T ss_pred HHhcCCceEEEecCCc
Confidence 2334556677776643
No 130
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=6.5e-27 Score=146.18 Aligned_cols=160 Identities=21% Similarity=0.293 Sum_probs=128.0
Q ss_pred CccEEEEEcCCCCChHHHHHhhhcCCc-ccccCccceeEE--EEEE--CCeEEEEEEcCCChhhHHHHHhhccCCCEEEE
Q 030233 16 CRIKLLMVGLDASGKTTILYKMKLGEI-VTTTPTIGFNVE--AVEY--KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTF 90 (181)
Q Consensus 16 ~~~~i~~~G~~~~GKssl~~~~~~~~~-~~~~~~~~~~~~--~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~ 90 (181)
.-++..++|+-|+|||+|+..|...++ .+...|+|+... .++. ..+++++|||+|+++|++....+++.+.+.++
T Consensus 10 yifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagalm 89 (215)
T KOG0097|consen 10 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALM 89 (215)
T ss_pred heEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccceeE
Confidence 357889999999999999999988775 455566665433 3333 77899999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHH
Q 030233 91 VVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGL 170 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 170 (181)
|+|++.++++..+..|+....... .++..+++++||.|+....+ +..+.....+.+.+..|+++||++|+|+++.|
T Consensus 90 vyditrrstynhlsswl~dar~lt-npnt~i~lignkadle~qrd---v~yeeak~faeengl~fle~saktg~nvedaf 165 (215)
T KOG0097|consen 90 VYDITRRSTYNHLSSWLTDARNLT-NPNTVIFLIGNKADLESQRD---VTYEEAKEFAEENGLMFLEASAKTGQNVEDAF 165 (215)
T ss_pred EEEehhhhhhhhHHHHHhhhhccC-CCceEEEEecchhhhhhccc---CcHHHHHHHHhhcCeEEEEecccccCcHHHHH
Confidence 999999999999999999876553 36788999999999865322 22222222235577789999999999999999
Q ss_pred HHHHhhhhc
Q 030233 171 DWLSNNISV 179 (181)
Q Consensus 171 ~~i~~~~~~ 179 (181)
-+.++++.+
T Consensus 166 le~akkiyq 174 (215)
T KOG0097|consen 166 LETAKKIYQ 174 (215)
T ss_pred HHHHHHHHH
Confidence 888777654
No 131
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.95 E-value=3.8e-26 Score=152.71 Aligned_cols=152 Identities=20% Similarity=0.145 Sum_probs=103.5
Q ss_pred cEEEEEcCCCCChHHHHHhhhcCC---ccc---ccCccceeEEEEEEC-CeEEEEEEcCCChhhHHHHHhhccCCCEEEE
Q 030233 18 IKLLMVGLDASGKTTILYKMKLGE---IVT---TTPTIGFNVEAVEYK-NKSFCVWDVGGQNKIRALWRHYFRDTLGLTF 90 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~~~---~~~---~~~~~~~~~~~~~~~-~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~ 90 (181)
+.|+++|.+++|||||++++.+.. +.. ...|.......+.+. +..+.+|||||++++.......+..+|++++
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~ 80 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKFIKNMLAGAGGIDLVLL 80 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHHHHHHHhhhhcCCEEEE
Confidence 368999999999999999999743 221 123444444455555 7799999999999988777778889999999
Q ss_pred EEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH----HHHHhhhCccccCCccEEEEEeeccCCCCH
Q 030233 91 VVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPT----AEVADKLELYSLGQRRWSIQSCSAISGQGL 166 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 166 (181)
|+|+++.. .......+..+ ... ...|+++++||+|+.+.... +++.+.+... .....+++++||++|+|+
T Consensus 81 V~d~~~~~-~~~~~~~~~~~-~~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Sa~~~~~v 154 (164)
T cd04171 81 VVAADEGI-MPQTREHLEIL-ELL--GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGT--FLADAPIFPVSAVTGEGI 154 (164)
T ss_pred EEECCCCc-cHhHHHHHHHH-HHh--CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhc--CcCCCcEEEEeCCCCcCH
Confidence 99997621 11111222211 211 23489999999998753221 1222222111 113568999999999999
Q ss_pred HHHHHHHHh
Q 030233 167 YEGLDWLSN 175 (181)
Q Consensus 167 ~~l~~~i~~ 175 (181)
+++++.+.+
T Consensus 155 ~~l~~~l~~ 163 (164)
T cd04171 155 EELKEYLDE 163 (164)
T ss_pred HHHHHHHhh
Confidence 999998864
No 132
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.94 E-value=6.8e-26 Score=153.72 Aligned_cols=151 Identities=17% Similarity=0.192 Sum_probs=107.2
Q ss_pred EEEEEcCCCCChHHHHHhhhcCC--cc------cccC------ccceeEE----EEE-----ECCeEEEEEEcCCChhhH
Q 030233 19 KLLMVGLDASGKTTILYKMKLGE--IV------TTTP------TIGFNVE----AVE-----YKNKSFCVWDVGGQNKIR 75 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~~~--~~------~~~~------~~~~~~~----~~~-----~~~~~~~i~d~~g~~~~~ 75 (181)
+|+++|++++|||||++++++.. +. .+.+ +.+.+.. .+. ..+..+.+|||||++++.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 58999999999999999998732 11 1111 1222221 121 246778999999999999
Q ss_pred HHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHH---HHHhhhCccccCCcc
Q 030233 76 ALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTA---EVADKLELYSLGQRR 152 (181)
Q Consensus 76 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~---~~~~~~~~~~~~~~~ 152 (181)
..+..+++.+|++++|+|+++..+......|... .. .++|+++|+||+|+.+....+ ++.+... ...
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~-~~----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~-----~~~ 151 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLA-LE----NNLEIIPVINKIDLPSADPERVKQQIEDVLG-----LDP 151 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHH-HH----cCCCEEEEEECCCCCcCCHHHHHHHHHHHhC-----CCc
Confidence 9999999999999999999987666555544432 22 368999999999986532221 2222221 122
Q ss_pred EEEEEeeccCCCCHHHHHHHHHhhhhc
Q 030233 153 WSIQSCSAISGQGLYEGLDWLSNNISV 179 (181)
Q Consensus 153 ~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 179 (181)
..++++||++|+|++++|+++.+.+..
T Consensus 152 ~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 178 (179)
T cd01890 152 SEAILVSAKTGLGVEDLLEAIVERIPP 178 (179)
T ss_pred ccEEEeeccCCCCHHHHHHHHHhhCCC
Confidence 358999999999999999999987653
No 133
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.94 E-value=1e-25 Score=151.59 Aligned_cols=156 Identities=24% Similarity=0.239 Sum_probs=107.2
Q ss_pred EEEEEcCCCCChHHHHHhhhcCCcc--c-ccCccceeEEEEEECCe-EEEEEEcCCChh-------hHHHHHhhccCCCE
Q 030233 19 KLLMVGLDASGKTTILYKMKLGEIV--T-TTPTIGFNVEAVEYKNK-SFCVWDVGGQNK-------IRALWRHYFRDTLG 87 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~-~~~i~d~~g~~~-------~~~~~~~~~~~~d~ 87 (181)
+|+++|.+|+|||||+|++.+.... . ...|.......+...+. .+.+|||||... +...+...+..+|+
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 81 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHIERTRL 81 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccccCCchHHHHHHHHhCCE
Confidence 5899999999999999999876531 1 11222223333445555 899999999531 11122223456999
Q ss_pred EEEEEECCCc-ccHHHHHHHHHHHHcCC-CCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCCC
Q 030233 88 LTFVVDSSDR-ERISEARNELHQILSDN-ELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQG 165 (181)
Q Consensus 88 ii~v~d~~~~-~s~~~~~~~~~~~~~~~-~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (181)
+++|+|++++ ++++....|...+.... ...+.|+++|+||+|+.+............. .....+++++||++|.|
T Consensus 82 vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~---~~~~~~~~~~Sa~~~~g 158 (170)
T cd01898 82 LLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKELLK---ELWGKPVFPISALTGEG 158 (170)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHHHHHh---hCCCCCEEEEecCCCCC
Confidence 9999999998 78888888877765432 1246899999999998664433332222111 11245799999999999
Q ss_pred HHHHHHHHHhhh
Q 030233 166 LYEGLDWLSNNI 177 (181)
Q Consensus 166 i~~l~~~i~~~~ 177 (181)
++++|+++.+.+
T Consensus 159 i~~l~~~i~~~~ 170 (170)
T cd01898 159 LDELLRKLAELL 170 (170)
T ss_pred HHHHHHHHHhhC
Confidence 999999998653
No 134
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.94 E-value=1.3e-25 Score=155.40 Aligned_cols=152 Identities=18% Similarity=0.185 Sum_probs=108.2
Q ss_pred CccEEEEEcCCCCChHHHHHhhhcCCccc---ccCccceeEEEEEECCe-EEEEEEcCCChh---------hHHHHHhhc
Q 030233 16 CRIKLLMVGLDASGKTTILYKMKLGEIVT---TTPTIGFNVEAVEYKNK-SFCVWDVGGQNK---------IRALWRHYF 82 (181)
Q Consensus 16 ~~~~i~~~G~~~~GKssl~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~~i~d~~g~~~---------~~~~~~~~~ 82 (181)
..++|+++|++|||||||++++++..+.. ..+|.......+.+.+. .+.+|||||..+ +...+ ..+
T Consensus 40 ~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~~~ 118 (204)
T cd01878 40 GIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQLVEAFRSTL-EEV 118 (204)
T ss_pred CCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCCceEEEeCCCccccCCCHHHHHHHHHHH-HHH
Confidence 35799999999999999999999876321 23344444444555444 899999999622 22222 235
Q ss_pred cCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccC
Q 030233 83 RDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAIS 162 (181)
Q Consensus 83 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (181)
..+|++++|+|++++.++.....+...+.. ....+.|+++|+||+|+.+..... .. ......+++++||++
T Consensus 119 ~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~-~~~~~~~viiV~NK~Dl~~~~~~~---~~-----~~~~~~~~~~~Sa~~ 189 (204)
T cd01878 119 AEADLLLHVVDASDPDYEEQIETVEKVLKE-LGAEDIPMILVLNKIDLLDDEELE---ER-----LEAGRPDAVFISAKT 189 (204)
T ss_pred hcCCeEEEEEECCCCChhhHHHHHHHHHHH-cCcCCCCEEEEEEccccCChHHHH---HH-----hhcCCCceEEEEcCC
Confidence 689999999999988877766555544432 223568999999999987643322 11 122345799999999
Q ss_pred CCCHHHHHHHHHhhh
Q 030233 163 GQGLYEGLDWLSNNI 177 (181)
Q Consensus 163 ~~~i~~l~~~i~~~~ 177 (181)
|.|+++++++|.+.+
T Consensus 190 ~~gi~~l~~~L~~~~ 204 (204)
T cd01878 190 GEGLDELLEAIEELL 204 (204)
T ss_pred CCCHHHHHHHHHhhC
Confidence 999999999998754
No 135
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.94 E-value=2.1e-25 Score=171.29 Aligned_cols=159 Identities=17% Similarity=0.149 Sum_probs=111.9
Q ss_pred CccEEEEEcCCCCChHHHHHhhhcCCcccccCcccee----EEEEEECCeEEEEEEcCCC----------hhhHHHH-Hh
Q 030233 16 CRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFN----VEAVEYKNKSFCVWDVGGQ----------NKIRALW-RH 80 (181)
Q Consensus 16 ~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~i~d~~g~----------~~~~~~~-~~ 80 (181)
..++|+++|.+++|||||+|++++.......+..+++ ...+.+.+..+.+|||||. +.+.... ..
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~ 289 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTHA 289 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHHHHH
Confidence 3589999999999999999999988743333333332 2345567888999999994 3333332 34
Q ss_pred hccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeec
Q 030233 81 YFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSA 160 (181)
Q Consensus 81 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (181)
+++.+|++++|+|++++.+++... ++..+.. .+.|+|+|+||+|+.+......+..............+++++||
T Consensus 290 ~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~----~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~SA 364 (472)
T PRK03003 290 AIEAAEVAVVLIDASEPISEQDQR-VLSMVIE----AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNISA 364 (472)
T ss_pred HHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH----cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEEC
Confidence 678999999999999887776653 3333332 47899999999999753322222222221111223457899999
Q ss_pred cCCCCHHHHHHHHHhhhhc
Q 030233 161 ISGQGLYEGLDWLSNNISV 179 (181)
Q Consensus 161 ~~~~~i~~l~~~i~~~~~~ 179 (181)
++|.|++++|+.+.+.+.+
T Consensus 365 k~g~gv~~lf~~i~~~~~~ 383 (472)
T PRK03003 365 KTGRAVDKLVPALETALES 383 (472)
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999887654
No 136
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.94 E-value=3.1e-26 Score=142.84 Aligned_cols=166 Identities=42% Similarity=0.737 Sum_probs=152.4
Q ss_pred CCCCccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEECC-eEEEEEEcCCChhhHHHHHhhccCCCEEEEE
Q 030233 13 FPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKN-KSFCVWDVGGQNKIRALWRHYFRDTLGLTFV 91 (181)
Q Consensus 13 ~~~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v 91 (181)
.+.++++|+++|-.++|||||+..+.+.+.....||.|++...+.+.+ ..+.+||.+|+...+..|..+|.+.|++|||
T Consensus 13 ~t~rEirilllGldnAGKTT~LKqL~sED~~hltpT~GFn~k~v~~~g~f~LnvwDiGGqr~IRpyWsNYyenvd~lIyV 92 (185)
T KOG0074|consen 13 RTRREIRILLLGLDNAGKTTFLKQLKSEDPRHLTPTNGFNTKKVEYDGTFHLNVWDIGGQRGIRPYWSNYYENVDGLIYV 92 (185)
T ss_pred CCcceEEEEEEecCCCcchhHHHHHccCChhhccccCCcceEEEeecCcEEEEEEecCCccccchhhhhhhhccceEEEE
Confidence 457889999999999999999999999999999999999999999955 9999999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHHH
Q 030233 92 VDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLD 171 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 171 (181)
+|.+++..|+++-+.+-++++......+|+.+..||-|+.-....+++...+.+.....+.+.+-+|||.+++|+.+-.+
T Consensus 93 IDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~eeia~klnl~~lrdRswhIq~csals~eg~~dg~~ 172 (185)
T KOG0074|consen 93 IDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVEEIALKLNLAGLRDRSWHIQECSALSLEGSTDGSD 172 (185)
T ss_pred EeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchHHHHHhcchhhhhhceEEeeeCccccccCccCcch
Confidence 99999999999888888888876667899999999999998888999999888887788889999999999999999999
Q ss_pred HHHhhhh
Q 030233 172 WLSNNIS 178 (181)
Q Consensus 172 ~i~~~~~ 178 (181)
|++....
T Consensus 173 wv~sn~~ 179 (185)
T KOG0074|consen 173 WVQSNPE 179 (185)
T ss_pred hhhcCCC
Confidence 9887654
No 137
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.94 E-value=2.6e-25 Score=149.27 Aligned_cols=154 Identities=20% Similarity=0.154 Sum_probs=108.0
Q ss_pred EEEEEcCCCCChHHHHHhhhcCCcccc---cCccceeEEEEEEC---CeEEEEEEcCCChhhHHHHHhhccCCCEEEEEE
Q 030233 19 KLLMVGLDASGKTTILYKMKLGEIVTT---TPTIGFNVEAVEYK---NKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVV 92 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~~~~~~~---~~~~~~~~~~~~~~---~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (181)
.|+++|++|+|||||++++.++.+... ..+.......+... +..+.+|||||++.+...+...+..+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 589999999999999999998775443 22333333334433 678999999999999988888899999999999
Q ss_pred ECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhC---ccc--cCCccEEEEEeeccCCCCHH
Q 030233 93 DSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLE---LYS--LGQRRWSIQSCSAISGQGLY 167 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~---~~~--~~~~~~~~~~~Sa~~~~~i~ 167 (181)
|+++...-+ ....+..+ .. .+.|+++|+||+|+.... .+.+..... ... ......+++++||++|+|++
T Consensus 82 d~~~~~~~~-~~~~~~~~-~~---~~~p~ivv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 155 (168)
T cd01887 82 AADDGVMPQ-TIEAIKLA-KA---ANVPFIVALNKIDKPNAN-PERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGID 155 (168)
T ss_pred ECCCCccHH-HHHHHHHH-HH---cCCCEEEEEEceeccccc-HHHHHHHHHHhhccccccccCcCcEEEeecccCCCHH
Confidence 998743221 11222222 22 468999999999986432 222222221 110 01234689999999999999
Q ss_pred HHHHHHHhhhh
Q 030233 168 EGLDWLSNNIS 178 (181)
Q Consensus 168 ~l~~~i~~~~~ 178 (181)
++++++.+...
T Consensus 156 ~l~~~l~~~~~ 166 (168)
T cd01887 156 DLLEAILLLAE 166 (168)
T ss_pred HHHHHHHHhhh
Confidence 99999988654
No 138
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.94 E-value=1.1e-26 Score=155.34 Aligned_cols=164 Identities=21% Similarity=0.240 Sum_probs=123.0
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhcCCccc-ccCccceeEEE-EEE---CCeEEEEEEcCCChhhHHHHHhhccCCCEEE
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKLGEIVT-TTPTIGFNVEA-VEY---KNKSFCVWDVGGQNKIRALWRHYFRDTLGLT 89 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~~-~~~~~~~~~~~-~~~---~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii 89 (181)
+..+|+.++|+..+|||+++-.+..+.|+. +.||...++.. +.. ..+.+.+|||+|+++|..+++..|.++|+++
T Consensus 2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl 81 (198)
T KOG0393|consen 2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFL 81 (198)
T ss_pred ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEE
Confidence 356899999999999999999998888765 56666533322 223 4578999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH-HHHHhh--------hCcccc-CCccEEEEEee
Q 030233 90 FVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPT-AEVADK--------LELYSL-GQRRWSIQSCS 159 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~-~~~~~~--------~~~~~~-~~~~~~~~~~S 159 (181)
+||++.+++||.++...|..-+.+.. ++.|+|+||+|.|+.+.... +.+... .....+ ......|+|||
T Consensus 82 ~cfsv~~p~S~~nv~~kW~pEi~~~c-p~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~EcS 160 (198)
T KOG0393|consen 82 LCFSVVSPESFENVKSKWIPEIKHHC-PNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLECS 160 (198)
T ss_pred EEEEcCChhhHHHHHhhhhHHHHhhC-CCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeeeh
Confidence 99999999999997764444444444 78999999999999853311 111111 000011 12336799999
Q ss_pred ccCCCCHHHHHHHHHhhhhc
Q 030233 160 AISGQGLYEGLDWLSNNISV 179 (181)
Q Consensus 160 a~~~~~i~~l~~~i~~~~~~ 179 (181)
|++..|++++|+.....+..
T Consensus 161 a~tq~~v~~vF~~a~~~~l~ 180 (198)
T KOG0393|consen 161 ALTQKGVKEVFDEAIRAALR 180 (198)
T ss_pred hhhhCCcHHHHHHHHHHHhc
Confidence 99999999999988876643
No 139
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.94 E-value=2.7e-25 Score=159.67 Aligned_cols=153 Identities=17% Similarity=0.107 Sum_probs=104.6
Q ss_pred EEEEEcCCCCChHHHHHhhhcCCcccccCccceeEE----EEEECCeEEEEEEcCCChhh--------HHHHHhhccCCC
Q 030233 19 KLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVE----AVEYKNKSFCVWDVGGQNKI--------RALWRHYFRDTL 86 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~d~~g~~~~--------~~~~~~~~~~~d 86 (181)
+|+++|.+|+|||||+|++++......++.++++.. .....+.++.+|||||.... .......+..+|
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aD 81 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVD 81 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCC
Confidence 589999999999999999999875544443333322 22335678999999996432 122445678999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCCCH
Q 030233 87 GLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGL 166 (181)
Q Consensus 87 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 166 (181)
++++|+|+++..+.. .++...+.. .+.|+++|+||+|+.+..........+.. .....+++++||++|.|+
T Consensus 82 vvl~VvD~~~~~~~~---~~i~~~l~~---~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~---~~~~~~v~~iSA~~g~gi 152 (270)
T TIGR00436 82 LILFVVDSDQWNGDG---EFVLTKLQN---LKRPVVLTRNKLDNKFKDKLLPLIDKYAI---LEDFKDIVPISALTGDNT 152 (270)
T ss_pred EEEEEEECCCCCchH---HHHHHHHHh---cCCCEEEEEECeeCCCHHHHHHHHHHHHh---hcCCCceEEEecCCCCCH
Confidence 999999999876654 233333333 47899999999998642221111111111 011126999999999999
Q ss_pred HHHHHHHHhhhhcc
Q 030233 167 YEGLDWLSNNISVK 180 (181)
Q Consensus 167 ~~l~~~i~~~~~~~ 180 (181)
+++++++.+.+...
T Consensus 153 ~~L~~~l~~~l~~~ 166 (270)
T TIGR00436 153 SFLAAFIEVHLPEG 166 (270)
T ss_pred HHHHHHHHHhCCCC
Confidence 99999999887653
No 140
>PRK15494 era GTPase Era; Provisional
Probab=99.93 E-value=1.2e-24 Score=160.38 Aligned_cols=156 Identities=16% Similarity=0.221 Sum_probs=109.0
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhcCCcccccCccce----eEEEEEECCeEEEEEEcCCChh-h-------HHHHHhhc
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGF----NVEAVEYKNKSFCVWDVGGQNK-I-------RALWRHYF 82 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~i~d~~g~~~-~-------~~~~~~~~ 82 (181)
.+..+|+++|.+|+|||||+|++++..+....+..++ ....+...+.++.+|||||... + .......+
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l 129 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSSL 129 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHHh
Confidence 4557999999999999999999999876544443333 3344566788999999999742 1 12222357
Q ss_pred cCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccC
Q 030233 83 RDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAIS 162 (181)
Q Consensus 83 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (181)
..+|++++|+|..+ ++.....++...+.. .+.|.++|+||+|+.+. ...++.+.... ......++++||++
T Consensus 130 ~~aDvil~VvD~~~--s~~~~~~~il~~l~~---~~~p~IlViNKiDl~~~-~~~~~~~~l~~---~~~~~~i~~iSAkt 200 (339)
T PRK15494 130 HSADLVLLIIDSLK--SFDDITHNILDKLRS---LNIVPIFLLNKIDIESK-YLNDIKAFLTE---NHPDSLLFPISALS 200 (339)
T ss_pred hhCCEEEEEEECCC--CCCHHHHHHHHHHHh---cCCCEEEEEEhhcCccc-cHHHHHHHHHh---cCCCcEEEEEeccC
Confidence 78999999999754 455554444433333 24577889999998653 23333333321 11235799999999
Q ss_pred CCCHHHHHHHHHhhhhc
Q 030233 163 GQGLYEGLDWLSNNISV 179 (181)
Q Consensus 163 ~~~i~~l~~~i~~~~~~ 179 (181)
|.|+++++++|.+.+.+
T Consensus 201 g~gv~eL~~~L~~~l~~ 217 (339)
T PRK15494 201 GKNIDGLLEYITSKAKI 217 (339)
T ss_pred ccCHHHHHHHHHHhCCC
Confidence 99999999999988765
No 141
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.93 E-value=1.6e-24 Score=147.96 Aligned_cols=156 Identities=20% Similarity=0.190 Sum_probs=113.9
Q ss_pred EEEEEcCCCCChHHHHHhhhcCCccccc-------------------CccceeEEEEEECCeEEEEEEcCCChhhHHHHH
Q 030233 19 KLLMVGLDASGKTTILYKMKLGEIVTTT-------------------PTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWR 79 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~ 79 (181)
+|+++|.+|+|||||+|++++....... .+.......+......+.+|||||...+...+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 80 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI 80 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence 4899999999999999999887643321 222333444556788999999999999988898
Q ss_pred hhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHH----HHhhhCcccc-------
Q 030233 80 HYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAE----VADKLELYSL------- 148 (181)
Q Consensus 80 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~----~~~~~~~~~~------- 148 (181)
.++..+|++++|+|+.++.+.. ...++..... .+.|+++++||+|+..+..... +.+.......
T Consensus 81 ~~~~~~d~~i~v~d~~~~~~~~-~~~~~~~~~~----~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (189)
T cd00881 81 RGLSVSDGAILVVDANEGVQPQ-TREHLRIARE----GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEG 155 (189)
T ss_pred HHHHhcCEEEEEEECCCCCcHH-HHHHHHHHHH----CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhh
Confidence 9999999999999998765432 2233333322 4799999999999986433322 2233222111
Q ss_pred --CCccEEEEEeeccCCCCHHHHHHHHHhhhhc
Q 030233 149 --GQRRWSIQSCSAISGQGLYEGLDWLSNNISV 179 (181)
Q Consensus 149 --~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 179 (181)
.....+++++||++|.|++++++++.+.+.+
T Consensus 156 ~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~~ 188 (189)
T cd00881 156 TRNGLLVPIVPGSALTGIGVEELLEAIVEHLPP 188 (189)
T ss_pred cccCCcceEEEEecccCcCHHHHHHHHHhhCCC
Confidence 1246789999999999999999999998754
No 142
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.93 E-value=7.4e-25 Score=160.57 Aligned_cols=158 Identities=22% Similarity=0.215 Sum_probs=112.6
Q ss_pred cEEEEEcCCCCChHHHHHhhhcCCcc--cc-cCccceeEEEEEE-CCeEEEEEEcCCChh-------hHHHHHhhccCCC
Q 030233 18 IKLLMVGLDASGKTTILYKMKLGEIV--TT-TPTIGFNVEAVEY-KNKSFCVWDVGGQNK-------IRALWRHYFRDTL 86 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~~~~~--~~-~~~~~~~~~~~~~-~~~~~~i~d~~g~~~-------~~~~~~~~~~~~d 86 (181)
..|+++|.|++|||||+|++.+.... .+ ..|.......+.+ ....+.+||+||..+ +...+...++.++
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~ 238 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIERTR 238 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhhhcC
Confidence 46999999999999999999875422 11 2344444455666 456899999999532 2223344556799
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHHcCC-CCCCCeEEEEEeCCCCCCCCCHHH-HHhhhCccccCCccEEEEEeeccCCC
Q 030233 87 GLTFVVDSSDRERISEARNELHQILSDN-ELSNAALLVFANKQDLPNVMPTAE-VADKLELYSLGQRRWSIQSCSAISGQ 164 (181)
Q Consensus 87 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~nK~D~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (181)
++++|+|++++++++....|...+.... ...+.|+++|+||+|+.+...... ..... ....+.+++++||++++
T Consensus 239 vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~----~~~~~~~i~~iSAktg~ 314 (335)
T PRK12299 239 LLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALE----LAALGGPVFLISAVTGE 314 (335)
T ss_pred EEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHH----HHhcCCCEEEEEcCCCC
Confidence 9999999998888888888877775432 224789999999999875432221 11111 11223579999999999
Q ss_pred CHHHHHHHHHhhhhc
Q 030233 165 GLYEGLDWLSNNISV 179 (181)
Q Consensus 165 ~i~~l~~~i~~~~~~ 179 (181)
|+++++++|.+.+.+
T Consensus 315 GI~eL~~~L~~~l~~ 329 (335)
T PRK12299 315 GLDELLRALWELLEE 329 (335)
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999988764
No 143
>PRK04213 GTP-binding protein; Provisional
Probab=99.93 E-value=2.2e-25 Score=153.91 Aligned_cols=161 Identities=23% Similarity=0.283 Sum_probs=103.1
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEECCeEEEEEEcCC-----------ChhhHHHHHhhcc
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGG-----------QNKIRALWRHYFR 83 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g-----------~~~~~~~~~~~~~ 83 (181)
...++|+++|.+|+|||||+|++++..+. ....++++..........+.+||||| .+.++..+..++.
T Consensus 7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~~-~~~~~~~t~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~ 85 (201)
T PRK04213 7 DRKPEIVFVGRSNVGKSTLVRELTGKKVR-VGKRPGVTRKPNHYDWGDFILTDLPGFGFMSGVPKEVQEKIKDEIVRYIE 85 (201)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCc-cCCCCceeeCceEEeecceEEEeCCccccccccCHHHHHHHHHHHHHHHH
Confidence 45789999999999999999999987743 22233444333333223789999999 4566666655554
Q ss_pred ----CCCEEEEEEECCCcccH-H--------HHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhhCcc-c
Q 030233 84 ----DTLGLTFVVDSSDRERI-S--------EARNELHQILSDNELSNAALLVFANKQDLPNVM--PTAEVADKLELY-S 147 (181)
Q Consensus 84 ----~~d~ii~v~d~~~~~s~-~--------~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~-~ 147 (181)
.++++++|+|......+ . .....+...+.. .++|+++|+||+|+.+.. ..+++.+.+... .
T Consensus 86 ~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~ 162 (201)
T PRK04213 86 DNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE---LGIPPIVAVNKMDKIKNRDEVLDEIAERLGLYPP 162 (201)
T ss_pred hhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH---cCCCeEEEEECccccCcHHHHHHHHHHHhcCCcc
Confidence 45788888887543221 0 011112222222 478999999999986533 223333333321 0
Q ss_pred cCCccEEEEEeeccCCCCHHHHHHHHHhhhhcc
Q 030233 148 LGQRRWSIQSCSAISGQGLYEGLDWLSNNISVK 180 (181)
Q Consensus 148 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~ 180 (181)
......+++++||++| |+++++++|.+.+.+.
T Consensus 163 ~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~ 194 (201)
T PRK04213 163 WRQWQDIIAPISAKKG-GIEELKEAIRKRLHEA 194 (201)
T ss_pred ccccCCcEEEEecccC-CHHHHHHHHHHhhcCc
Confidence 0111236899999999 9999999999987653
No 144
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.93 E-value=1.2e-24 Score=167.08 Aligned_cols=151 Identities=21% Similarity=0.275 Sum_probs=108.2
Q ss_pred ccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEE----EEEECCeEEEEEEcCCCh--------hhHHHHHhhccC
Q 030233 17 RIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVE----AVEYKNKSFCVWDVGGQN--------KIRALWRHYFRD 84 (181)
Q Consensus 17 ~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~d~~g~~--------~~~~~~~~~~~~ 84 (181)
..+|+++|.+|+|||||+|++++.......++++++.. ...+.+..+.+|||||.+ .+...+..+++.
T Consensus 38 ~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ 117 (472)
T PRK03003 38 LPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAMRT 117 (472)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHHHh
Confidence 36899999999999999999998775544555555433 344577889999999965 244556678889
Q ss_pred CCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCC
Q 030233 85 TLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQ 164 (181)
Q Consensus 85 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (181)
+|++++|+|+++..+... ..+...++. .+.|+++|+||+|+..... +....... +.. .++++||++|.
T Consensus 118 aD~il~VvD~~~~~s~~~--~~i~~~l~~---~~~piilV~NK~Dl~~~~~--~~~~~~~~---g~~--~~~~iSA~~g~ 185 (472)
T PRK03003 118 ADAVLFVVDATVGATATD--EAVARVLRR---SGKPVILAANKVDDERGEA--DAAALWSL---GLG--EPHPVSALHGR 185 (472)
T ss_pred CCEEEEEEECCCCCCHHH--HHHHHHHHH---cCCCEEEEEECccCCccch--hhHHHHhc---CCC--CeEEEEcCCCC
Confidence 999999999998765432 223333333 4799999999999864321 11111111 111 25799999999
Q ss_pred CHHHHHHHHHhhhhc
Q 030233 165 GLYEGLDWLSNNISV 179 (181)
Q Consensus 165 ~i~~l~~~i~~~~~~ 179 (181)
|++++|+++.+.+.+
T Consensus 186 gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 186 GVGDLLDAVLAALPE 200 (472)
T ss_pred CcHHHHHHHHhhccc
Confidence 999999999988754
No 145
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.93 E-value=3.6e-25 Score=144.81 Aligned_cols=134 Identities=22% Similarity=0.256 Sum_probs=93.2
Q ss_pred EEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEECCeEEEEEEcCCCh-----hhHHHHHhhccCCCEEEEEEE
Q 030233 19 KLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQN-----KIRALWRHYFRDTLGLTFVVD 93 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~-----~~~~~~~~~~~~~d~ii~v~d 93 (181)
||+++|++|+|||||++++.+..+. +.+|.+.. +.. .+|||||.. .+..... .++++|++++|+|
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~-~~~t~~~~-----~~~---~~iDt~G~~~~~~~~~~~~~~-~~~~ad~vilv~d 71 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL-YKKTQAVE-----YND---GAIDTPGEYVENRRLYSALIV-TAADADVIALVQS 71 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc-cccceeEE-----EcC---eeecCchhhhhhHHHHHHHHH-HhhcCCEEEEEec
Confidence 7999999999999999999987652 33343322 222 689999972 3344433 5789999999999
Q ss_pred CCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC-CCHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHHHH
Q 030233 94 SSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV-MPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDW 172 (181)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 172 (181)
++++.++.. ..|.. .. ..|+++|+||+|+.+. ...++..+.... ....+++++||++|+|++++|++
T Consensus 72 ~~~~~s~~~-~~~~~-~~------~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~gi~~l~~~ 139 (142)
T TIGR02528 72 ATDPESRFP-PGFAS-IF------VKPVIGLVTKIDLAEADVDIERAKELLET----AGAEPIFEISSVDEQGLEALVDY 139 (142)
T ss_pred CCCCCcCCC-hhHHH-hc------cCCeEEEEEeeccCCcccCHHHHHHHHHH----cCCCcEEEEecCCCCCHHHHHHH
Confidence 999988754 22322 11 2499999999998652 222322222211 11236999999999999999998
Q ss_pred HH
Q 030233 173 LS 174 (181)
Q Consensus 173 i~ 174 (181)
+.
T Consensus 140 l~ 141 (142)
T TIGR02528 140 LN 141 (142)
T ss_pred Hh
Confidence 85
No 146
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.93 E-value=3.4e-24 Score=142.19 Aligned_cols=143 Identities=20% Similarity=0.164 Sum_probs=105.2
Q ss_pred cEEEEEcCCCCChHHHHHhhhcCCcccccCccc----eeEEEEEECCeEEEEEEcCCChhhHH--------HHHhhccCC
Q 030233 18 IKLLMVGLDASGKTTILYKMKLGEIVTTTPTIG----FNVEAVEYKNKSFCVWDVGGQNKIRA--------LWRHYFRDT 85 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~i~d~~g~~~~~~--------~~~~~~~~~ 85 (181)
++|+++|++|+|||||++++.+.......+..+ .....+...+..+.+|||||...+.. .....+..+
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 81 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEEA 81 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhC
Confidence 589999999999999999999887433222222 22334555778999999999654321 133456789
Q ss_pred CEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCCC
Q 030233 86 LGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQG 165 (181)
Q Consensus 86 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (181)
|++++|+|++++.+......+.. ..+.|+++|+||+|+...... .......+++++||+++.|
T Consensus 82 ~~~v~v~d~~~~~~~~~~~~~~~-------~~~~~vi~v~nK~D~~~~~~~----------~~~~~~~~~~~~Sa~~~~~ 144 (157)
T cd04164 82 DLVLFVIDASRGLDEEDLEILEL-------PADKPIIVVLNKSDLLPDSEL----------LSLLAGKPIIAISAKTGEG 144 (157)
T ss_pred CEEEEEEECCCCCCHHHHHHHHh-------hcCCCEEEEEEchhcCCcccc----------ccccCCCceEEEECCCCCC
Confidence 99999999998776665543322 257999999999998764332 1123455799999999999
Q ss_pred HHHHHHHHHhhh
Q 030233 166 LYEGLDWLSNNI 177 (181)
Q Consensus 166 i~~l~~~i~~~~ 177 (181)
+++++++|.+.+
T Consensus 145 v~~l~~~l~~~~ 156 (157)
T cd04164 145 LDELKEALLELA 156 (157)
T ss_pred HHHHHHHHHHhh
Confidence 999999998764
No 147
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.93 E-value=5.6e-24 Score=141.02 Aligned_cols=153 Identities=24% Similarity=0.302 Sum_probs=113.0
Q ss_pred ccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEEE--EEECC--eEEEEEEcCCChhhHHHHHhhccCCCEEEEE
Q 030233 17 RIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVEA--VEYKN--KSFCVWDVGGQNKIRALWRHYFRDTLGLTFV 91 (181)
Q Consensus 17 ~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~~--~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v 91 (181)
++||+++|.+|+|||||++++.+..++ .+.++.+.+... +...+ ..+.+||+||+..+...+...++.++.++.+
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~ 80 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV 80 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence 479999999999999999999988843 333444443333 45566 7899999999999999888888999999999
Q ss_pred EECCCc-ccHHHHH-HHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCCCHHHH
Q 030233 92 VDSSDR-ERISEAR-NELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEG 169 (181)
Q Consensus 92 ~d~~~~-~s~~~~~-~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 169 (181)
+|.... .++.... .+...+..... .+.|+++++||+|+......+........ ....+++++||.+|.|++++
T Consensus 81 ~d~~~~v~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~----~~~~~~~~~sa~~~~gv~~~ 155 (161)
T TIGR00231 81 FDIVILVLDVEEILEKQTKEIIHHAE-SNVPIILVGNKIDLRDAKLKTHVAFLFAK----LNGEPIIPLSAETGKNIDSA 155 (161)
T ss_pred EEEeeeehhhhhHhHHHHHHHHHhcc-cCCcEEEEEEcccCCcchhhHHHHHHHhh----ccCCceEEeecCCCCCHHHH
Confidence 999876 5665554 44444443322 27899999999999764433333333322 22346999999999999999
Q ss_pred HHHHH
Q 030233 170 LDWLS 174 (181)
Q Consensus 170 ~~~i~ 174 (181)
+++|.
T Consensus 156 ~~~l~ 160 (161)
T TIGR00231 156 FKIVE 160 (161)
T ss_pred HHHhh
Confidence 99874
No 148
>PLN00023 GTP-binding protein; Provisional
Probab=99.93 E-value=1.3e-24 Score=156.23 Aligned_cols=123 Identities=21% Similarity=0.354 Sum_probs=102.6
Q ss_pred hhCCCCccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEE--EEEEC---------------CeEEEEEEcCCCh
Q 030233 11 RFFPQCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVE--AVEYK---------------NKSFCVWDVGGQN 72 (181)
Q Consensus 11 ~~~~~~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~--~~~~~---------------~~~~~i~d~~g~~ 72 (181)
..-+...+||+++|+.|||||||+++++++.+. .+.+|++.+.. .+.+. ...+.||||+|++
T Consensus 15 ~~~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqE 94 (334)
T PLN00023 15 GGPPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHE 94 (334)
T ss_pred cCCCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCCh
Confidence 345678899999999999999999999998864 45678876543 33432 3679999999999
Q ss_pred hhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCC-----------CCCCeEEEEEeCCCCCCC
Q 030233 73 KIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNE-----------LSNAALLVFANKQDLPNV 133 (181)
Q Consensus 73 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-----------~~~~piilv~nK~D~~~~ 133 (181)
.+..++..+++.++++|+|||++++++++.+..|+..+..... ..++|+++|+||+|+.+.
T Consensus 95 rfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~ 166 (334)
T PLN00023 95 RYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPK 166 (334)
T ss_pred hhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccc
Confidence 9999999999999999999999999999999999988875421 135899999999998653
No 149
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.93 E-value=4.2e-24 Score=157.78 Aligned_cols=150 Identities=20% Similarity=0.188 Sum_probs=109.3
Q ss_pred CccEEEEEcCCCCChHHHHHhhhcCCcc---cccCccceeEEEEEE-CCeEEEEEEcCCC---------hhhHHHHHhhc
Q 030233 16 CRIKLLMVGLDASGKTTILYKMKLGEIV---TTTPTIGFNVEAVEY-KNKSFCVWDVGGQ---------NKIRALWRHYF 82 (181)
Q Consensus 16 ~~~~i~~~G~~~~GKssl~~~~~~~~~~---~~~~~~~~~~~~~~~-~~~~~~i~d~~g~---------~~~~~~~~~~~ 82 (181)
..++|+++|.+|+|||||+|++++.... ...+|.+.....+.+ .+..+.+|||+|. +.+.+.. ..+
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f~~tl-e~~ 266 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAFRATL-EEV 266 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCCceEEEEecCcccccCCHHHHHHHHHHH-HHH
Confidence 3489999999999999999999997632 234566677777777 5679999999996 2233322 346
Q ss_pred cCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccC
Q 030233 83 RDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAIS 162 (181)
Q Consensus 83 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (181)
..+|++++|+|++++.+......+...+ ......+.|+++|+||+|+.+. +.+..... ...+++++||++
T Consensus 267 ~~ADlil~VvD~s~~~~~~~~~~~~~~L-~~l~~~~~piIlV~NK~Dl~~~---~~v~~~~~------~~~~~i~iSAkt 336 (351)
T TIGR03156 267 READLLLHVVDASDPDREEQIEAVEKVL-EELGAEDIPQLLVYNKIDLLDE---PRIERLEE------GYPEAVFVSAKT 336 (351)
T ss_pred HhCCEEEEEEECCCCchHHHHHHHHHHH-HHhccCCCCEEEEEEeecCCCh---HhHHHHHh------CCCCEEEEEccC
Confidence 7899999999999988776665443333 2222247899999999998653 22222111 112589999999
Q ss_pred CCCHHHHHHHHHhh
Q 030233 163 GQGLYEGLDWLSNN 176 (181)
Q Consensus 163 ~~~i~~l~~~i~~~ 176 (181)
|+|+++++++|.+.
T Consensus 337 g~GI~eL~~~I~~~ 350 (351)
T TIGR03156 337 GEGLDLLLEAIAER 350 (351)
T ss_pred CCCHHHHHHHHHhh
Confidence 99999999999765
No 150
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.93 E-value=1.9e-24 Score=164.84 Aligned_cols=158 Identities=22% Similarity=0.203 Sum_probs=109.4
Q ss_pred CccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeE----EEEEECCeEEEEEEcCCChhhH----------HH-HHh
Q 030233 16 CRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNV----EAVEYKNKSFCVWDVGGQNKIR----------AL-WRH 80 (181)
Q Consensus 16 ~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~i~d~~g~~~~~----------~~-~~~ 80 (181)
..++++++|.+++|||||+|++++.......+..+++. ..+...+..+.+|||||..+.. .. ...
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~ 250 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLK 250 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHHH
Confidence 35899999999999999999999877433333333332 3344577789999999964322 11 234
Q ss_pred hccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCC-CCCCHHHHHhhhCccccCCccEEEEEee
Q 030233 81 YFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLP-NVMPTAEVADKLELYSLGQRRWSIQSCS 159 (181)
Q Consensus 81 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (181)
.++.+|++++|+|++++.+..... .+..+.. .+.|+++|+||+|+. +....+++...+..........+++++|
T Consensus 251 ~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vi~~S 325 (429)
T TIGR03594 251 AIERADVVLLVLDATEGITEQDLR-IAGLILE----AGKALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIVFIS 325 (429)
T ss_pred HHHhCCEEEEEEECCCCccHHHHH-HHHHHHH----cCCcEEEEEECcccCCCHHHHHHHHHHHHHhcccCCCCceEEEe
Confidence 678899999999999776654432 2222222 368999999999997 3222334444333222233456899999
Q ss_pred ccCCCCHHHHHHHHHhhhh
Q 030233 160 AISGQGLYEGLDWLSNNIS 178 (181)
Q Consensus 160 a~~~~~i~~l~~~i~~~~~ 178 (181)
|++|.|++++|+++.+...
T Consensus 326 A~~g~~v~~l~~~i~~~~~ 344 (429)
T TIGR03594 326 ALTGQGVDKLLDAIDEVYE 344 (429)
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999999887654
No 151
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.93 E-value=2.9e-24 Score=148.19 Aligned_cols=157 Identities=27% Similarity=0.386 Sum_probs=117.5
Q ss_pred EEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEE----CCeEEEEEEcCCChhhHHHHHhhccCC-CEEEEEEE
Q 030233 19 KLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEY----KNKSFCVWDVGGQNKIRALWRHYFRDT-LGLTFVVD 93 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~d~~g~~~~~~~~~~~~~~~-d~ii~v~d 93 (181)
+|+++|++++|||||++++.++.+....++...+...+.. .+..+.+||+||+.+++..+..+++.+ +++|+|+|
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD 81 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIEPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVD 81 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEeecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEE
Confidence 6899999999999999999998765554444333333332 367899999999999999998999998 99999999
Q ss_pred CCCc-ccHHHHHHHHHHHHcCC--CCCCCeEEEEEeCCCCCCCCCHHHHHhhhCcc------------------------
Q 030233 94 SSDR-ERISEARNELHQILSDN--ELSNAALLVFANKQDLPNVMPTAEVADKLELY------------------------ 146 (181)
Q Consensus 94 ~~~~-~s~~~~~~~~~~~~~~~--~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~------------------------ 146 (181)
+.+. .++.....++..++... ..+++|+++++||+|+....+.+.+++.+...
T Consensus 82 ~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~~~~~i~~~le~ei~~~~~~r~~~l~~~~~~~~~~~~ 161 (203)
T cd04105 82 SATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKPAKKIKEQLEKELNTLRESRSKSLSSLDGDEGSKES 161 (203)
T ss_pred CccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccCCHHHHHHHHHHHHHHHHHHHhccccccccccccccc
Confidence 9987 67777777776665431 22579999999999997655544333322210
Q ss_pred -----------ccCCccEEEEEeeccCCC-CHHHHHHHHHh
Q 030233 147 -----------SLGQRRWSIQSCSAISGQ-GLYEGLDWLSN 175 (181)
Q Consensus 147 -----------~~~~~~~~~~~~Sa~~~~-~i~~l~~~i~~ 175 (181)
......+.+.++|++.+. |++.+.+||.+
T Consensus 162 ~~~~~~~~f~f~~~~~~v~~~~~s~~~~~~~~~~~~~w~~~ 202 (203)
T cd04105 162 LGDKGGKSFEFDQLEGKVEFLEGSVKVDGGGIDGWEEWIDE 202 (203)
T ss_pred cccccCcceeeccCceeEEEEEeEEecCCCChHhHHHHHhh
Confidence 001247789999999876 69999999875
No 152
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.92 E-value=7.7e-24 Score=145.20 Aligned_cols=157 Identities=20% Similarity=0.088 Sum_probs=105.6
Q ss_pred cEEEEEcCCCCChHHHHHhhhcCC----cc------cccCccceeEEEEEEC--------------CeEEEEEEcCCChh
Q 030233 18 IKLLMVGLDASGKTTILYKMKLGE----IV------TTTPTIGFNVEAVEYK--------------NKSFCVWDVGGQNK 73 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~~~----~~------~~~~~~~~~~~~~~~~--------------~~~~~i~d~~g~~~ 73 (181)
++|+++|++++|||||++++++.. +. ....|.+.....+.+. +..+.+|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 579999999999999999998731 11 1123444444334333 67999999999987
Q ss_pred hHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHH----HHHhhhCccc--
Q 030233 74 IRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTA----EVADKLELYS-- 147 (181)
Q Consensus 74 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~----~~~~~~~~~~-- 147 (181)
+..........+|++++|+|+.+.........+. +... .+.|+++++||+|+......+ ++.+.+....
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~---~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~ 155 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEI---LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEK 155 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHh
Confidence 6655555667789999999998644333322221 1222 257999999999987533222 2222211110
Q ss_pred cCCccEEEEEeeccCCCCHHHHHHHHHhhhhc
Q 030233 148 LGQRRWSIQSCSAISGQGLYEGLDWLSNNISV 179 (181)
Q Consensus 148 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 179 (181)
....+++++++||++|+|++++++++.+++..
T Consensus 156 ~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~ 187 (192)
T cd01889 156 TRFKNSPIIPVSAKPGGGEAELGKDLNNLIVL 187 (192)
T ss_pred cCcCCCCEEEEeccCCCCHHHHHHHHHhcccc
Confidence 12345689999999999999999999988753
No 153
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.92 E-value=4.5e-24 Score=140.39 Aligned_cols=149 Identities=28% Similarity=0.427 Sum_probs=113.9
Q ss_pred EEcCCCCChHHHHHhhhcCCc-cc-ccCccceeEEEEEEC----CeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECC
Q 030233 22 MVGLDASGKTTILYKMKLGEI-VT-TTPTIGFNVEAVEYK----NKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSS 95 (181)
Q Consensus 22 ~~G~~~~GKssl~~~~~~~~~-~~-~~~~~~~~~~~~~~~----~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~ 95 (181)
++|++|+|||||++++.+... .. ..++. ......... ...+.+||+||...+.......++.+|++++|+|++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 79 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT 79 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence 589999999999999998876 33 33333 444444443 678999999999988888888889999999999999
Q ss_pred CcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHH--hhhCccccCCccEEEEEeeccCCCCHHHHHHHH
Q 030233 96 DRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVA--DKLELYSLGQRRWSIQSCSAISGQGLYEGLDWL 173 (181)
Q Consensus 96 ~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i 173 (181)
++.++.....++..........+.|+++++||+|+.......... .... .....+++++|+.++.|+++++++|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~----~~~~~~~~~~s~~~~~~i~~~~~~l 155 (157)
T cd00882 80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLA----KELGVPYFETSAKTGENVEELFEEL 155 (157)
T ss_pred CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHH----hhcCCcEEEEecCCCCChHHHHHHH
Confidence 998888888774444344444689999999999987654444332 1111 2345689999999999999999998
Q ss_pred Hh
Q 030233 174 SN 175 (181)
Q Consensus 174 ~~ 175 (181)
.+
T Consensus 156 ~~ 157 (157)
T cd00882 156 AE 157 (157)
T ss_pred hC
Confidence 63
No 154
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.92 E-value=1.4e-23 Score=144.18 Aligned_cols=144 Identities=22% Similarity=0.276 Sum_probs=98.7
Q ss_pred EEEEEcCCCCChHHHHHhhhc--CCccccc-------------Cccce----eEEEEEECCeEEEEEEcCCChhhHHHHH
Q 030233 19 KLLMVGLDASGKTTILYKMKL--GEIVTTT-------------PTIGF----NVEAVEYKNKSFCVWDVGGQNKIRALWR 79 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~--~~~~~~~-------------~~~~~----~~~~~~~~~~~~~i~d~~g~~~~~~~~~ 79 (181)
+|+++|++++|||||++++++ +.+.... .+.+. ....+......+.+|||||++++...+.
T Consensus 4 ~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~ 83 (194)
T cd01891 4 NIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEVE 83 (194)
T ss_pred EEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHHH
Confidence 689999999999999999997 3332211 12222 2234556788999999999999999999
Q ss_pred hhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHH---HHHhhhCcc--ccCCccEE
Q 030233 80 HYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTA---EVADKLELY--SLGQRRWS 154 (181)
Q Consensus 80 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~---~~~~~~~~~--~~~~~~~~ 154 (181)
.+++.+|++++|+|+++. .+.....++..... .++|+++|+||+|+....... ++...+... .....+++
T Consensus 84 ~~~~~~d~~ilV~d~~~~-~~~~~~~~~~~~~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (194)
T cd01891 84 RVLSMVDGVLLLVDASEG-PMPQTRFVLKKALE----LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFP 158 (194)
T ss_pred HHHHhcCEEEEEEECCCC-ccHHHHHHHHHHHH----cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccC
Confidence 999999999999999863 22333333443322 368999999999986533222 222221100 01223568
Q ss_pred EEEeeccCCCCHH
Q 030233 155 IQSCSAISGQGLY 167 (181)
Q Consensus 155 ~~~~Sa~~~~~i~ 167 (181)
++++||++|.|+.
T Consensus 159 iv~~Sa~~g~~~~ 171 (194)
T cd01891 159 VLYASAKNGWASL 171 (194)
T ss_pred EEEeehhcccccc
Confidence 9999999997663
No 155
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.92 E-value=5e-24 Score=162.29 Aligned_cols=146 Identities=18% Similarity=0.176 Sum_probs=108.0
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhcCCcccccC----ccceeEEEEEECCeEEEEEEcCCChhhHHH--------HHhhc
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKLGEIVTTTP----TIGFNVEAVEYKNKSFCVWDVGGQNKIRAL--------WRHYF 82 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~--------~~~~~ 82 (181)
...++|+++|.+|+|||||+|++++.......+ |..+....+.+.+..+.+|||||....... ....+
T Consensus 213 ~~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~ 292 (449)
T PRK05291 213 REGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSREAI 292 (449)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHHHHH
Confidence 346899999999999999999999876432222 333344556668889999999997643321 23467
Q ss_pred cCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccC
Q 030233 83 RDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAIS 162 (181)
Q Consensus 83 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (181)
..+|++++|+|++++.++.....|.. ..+.|+++|+||+|+.+..... .....+++++||++
T Consensus 293 ~~aD~il~VvD~s~~~s~~~~~~l~~-------~~~~piiiV~NK~DL~~~~~~~-----------~~~~~~~i~iSAkt 354 (449)
T PRK05291 293 EEADLVLLVLDASEPLTEEDDEILEE-------LKDKPVIVVLNKADLTGEIDLE-----------EENGKPVIRISAKT 354 (449)
T ss_pred HhCCEEEEEecCCCCCChhHHHHHHh-------cCCCCcEEEEEhhhccccchhh-----------hccCCceEEEEeeC
Confidence 88999999999998877765433322 2478999999999997533221 11234689999999
Q ss_pred CCCHHHHHHHHHhhhh
Q 030233 163 GQGLYEGLDWLSNNIS 178 (181)
Q Consensus 163 ~~~i~~l~~~i~~~~~ 178 (181)
|+|++++++++.+.+.
T Consensus 355 g~GI~~L~~~L~~~l~ 370 (449)
T PRK05291 355 GEGIDELREAIKELAF 370 (449)
T ss_pred CCCHHHHHHHHHHHHh
Confidence 9999999999988764
No 156
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.92 E-value=3.2e-24 Score=144.97 Aligned_cols=152 Identities=20% Similarity=0.156 Sum_probs=105.2
Q ss_pred EEcCCCCChHHHHHhhhcCCc--ccc-cCccceeEEEEEEC-CeEEEEEEcCCChhh-------HHHHHhhccCCCEEEE
Q 030233 22 MVGLDASGKTTILYKMKLGEI--VTT-TPTIGFNVEAVEYK-NKSFCVWDVGGQNKI-------RALWRHYFRDTLGLTF 90 (181)
Q Consensus 22 ~~G~~~~GKssl~~~~~~~~~--~~~-~~~~~~~~~~~~~~-~~~~~i~d~~g~~~~-------~~~~~~~~~~~d~ii~ 90 (181)
++|++|+|||||+|++.+... ..+ ..|.......+.+. +..+.+|||||.... .......++.+|++++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~ 80 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAILH 80 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEEE
Confidence 589999999999999998863 111 22333334445566 889999999996321 1122345678999999
Q ss_pred EEECCCc------ccHHHHHHHHHHHHcCCC------CCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEe
Q 030233 91 VVDSSDR------ERISEARNELHQILSDNE------LSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSC 158 (181)
Q Consensus 91 v~d~~~~------~s~~~~~~~~~~~~~~~~------~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (181)
|+|+.++ .++.....+...+..... ..+.|+++|+||+|+............. ........++++
T Consensus 81 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~---~~~~~~~~~~~~ 157 (176)
T cd01881 81 VVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRE---LALEEGAEVVPI 157 (176)
T ss_pred EEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHH---HhcCCCCCEEEE
Confidence 9999987 467776666666654322 1478999999999997643333321011 112334569999
Q ss_pred eccCCCCHHHHHHHHHhh
Q 030233 159 SAISGQGLYEGLDWLSNN 176 (181)
Q Consensus 159 Sa~~~~~i~~l~~~i~~~ 176 (181)
||+++.|++++++++...
T Consensus 158 Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 158 SAKTEEGLDELIRAIYEL 175 (176)
T ss_pred ehhhhcCHHHHHHHHHhh
Confidence 999999999999998764
No 157
>PTZ00099 rab6; Provisional
Probab=99.92 E-value=1.7e-24 Score=146.08 Aligned_cols=131 Identities=20% Similarity=0.328 Sum_probs=103.6
Q ss_pred ccccCccceeEEE--EEE--CCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCC
Q 030233 43 VTTTPTIGFNVEA--VEY--KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSN 118 (181)
Q Consensus 43 ~~~~~~~~~~~~~--~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~ 118 (181)
..+.||++.+... +.. ....+.+|||||++.+...+..+++++|++|+|||++++++|+.+..|+..++.... +.
T Consensus 7 ~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~-~~ 85 (176)
T PTZ00099 7 NNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERG-KD 85 (176)
T ss_pred CCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CC
Confidence 3467888866643 333 457899999999999999999999999999999999999999999999988876532 57
Q ss_pred CeEEEEEeCCCCCCC--CCHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHHHHHHhhhhc
Q 030233 119 AALLVFANKQDLPNV--MPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNISV 179 (181)
Q Consensus 119 ~piilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 179 (181)
.|+++|+||+|+.+. .+.++..... ...+..|+++||++|+|++++|++|.+.+.+
T Consensus 86 ~piilVgNK~DL~~~~~v~~~e~~~~~-----~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~ 143 (176)
T PTZ00099 86 VIIALVGNKTDLGDLRKVTYEEGMQKA-----QEYNTMFHETSAKAGHNIKVLFKKIAAKLPN 143 (176)
T ss_pred CeEEEEEECcccccccCCCHHHHHHHH-----HHcCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 899999999998642 2333322221 2234478999999999999999999998865
No 158
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.92 E-value=2.3e-23 Score=157.93 Aligned_cols=149 Identities=16% Similarity=0.149 Sum_probs=107.8
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhcCCcccccCcccee----EEEEEECCeEEEEEEcCCChhhHHH--------HHhhc
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFN----VEAVEYKNKSFCVWDVGGQNKIRAL--------WRHYF 82 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~i~d~~g~~~~~~~--------~~~~~ 82 (181)
...++|+++|++|+|||||+|++++.......+.++++ ...+.+.+..+.+|||||...+... ...++
T Consensus 201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~ 280 (442)
T TIGR00450 201 DDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHADFVERLGIEKSFKAI 280 (442)
T ss_pred hcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchhHHHHHHHHHHHHHH
Confidence 35689999999999999999999987643333333333 3345568889999999997544322 24577
Q ss_pred cCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccC
Q 030233 83 RDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAIS 162 (181)
Q Consensus 83 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (181)
+.+|++++|+|++++.++... |+..+.. .+.|+++|+||+|+.+. +.+.+. ...+.+++++||++
T Consensus 281 ~~aD~il~V~D~s~~~s~~~~--~l~~~~~----~~~piIlV~NK~Dl~~~-~~~~~~--------~~~~~~~~~vSak~ 345 (442)
T TIGR00450 281 KQADLVIYVLDASQPLTKDDF--LIIDLNK----SKKPFILVLNKIDLKIN-SLEFFV--------SSKVLNSSNLSAKQ 345 (442)
T ss_pred hhCCEEEEEEECCCCCChhHH--HHHHHhh----CCCCEEEEEECccCCCc-chhhhh--------hhcCCceEEEEEec
Confidence 889999999999988877654 5544422 36899999999998653 222211 12234689999998
Q ss_pred CCCHHHHHHHHHhhhhc
Q 030233 163 GQGLYEGLDWLSNNISV 179 (181)
Q Consensus 163 ~~~i~~l~~~i~~~~~~ 179 (181)
.|++++|+.+.+.+.+
T Consensus 346 -~gI~~~~~~L~~~i~~ 361 (442)
T TIGR00450 346 -LKIKALVDLLTQKINA 361 (442)
T ss_pred -CCHHHHHHHHHHHHHH
Confidence 6999999988887654
No 159
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.92 E-value=1.4e-23 Score=153.73 Aligned_cols=156 Identities=23% Similarity=0.245 Sum_probs=109.4
Q ss_pred cEEEEEcCCCCChHHHHHhhhcCCcc--cc-cCccceeEEEEEECC-eEEEEEEcCCChh-------hHHHHHhhccCCC
Q 030233 18 IKLLMVGLDASGKTTILYKMKLGEIV--TT-TPTIGFNVEAVEYKN-KSFCVWDVGGQNK-------IRALWRHYFRDTL 86 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~~~~~--~~-~~~~~~~~~~~~~~~-~~~~i~d~~g~~~-------~~~~~~~~~~~~d 86 (181)
..|+++|.+++|||||++++.+.... .+ ..|...+...+.+.+ ..+.+||+||..+ +...+...++.++
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhierad 237 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHIERTR 237 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHHHhhC
Confidence 47999999999999999999976521 11 223334444455655 8999999999642 2222333445799
Q ss_pred EEEEEEECCCc---ccHHHHHHHHHHHHcC-CCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccC
Q 030233 87 GLTFVVDSSDR---ERISEARNELHQILSD-NELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAIS 162 (181)
Q Consensus 87 ~ii~v~d~~~~---~s~~~~~~~~~~~~~~-~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (181)
++++|+|+++. ++++....|...+... ....+.|+++|+||+|+.+....+++.+.+. ...+.+++++||++
T Consensus 238 ~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~----~~~~~~vi~iSAkt 313 (329)
T TIGR02729 238 VLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEELAELLKELK----KALGKPVFPISALT 313 (329)
T ss_pred EEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHHHHHHHHHHH----HHcCCcEEEEEccC
Confidence 99999999976 5677777666655432 1234789999999999976433333333322 11235799999999
Q ss_pred CCCHHHHHHHHHhhh
Q 030233 163 GQGLYEGLDWLSNNI 177 (181)
Q Consensus 163 ~~~i~~l~~~i~~~~ 177 (181)
++|++++++++.+.+
T Consensus 314 g~GI~eL~~~I~~~l 328 (329)
T TIGR02729 314 GEGLDELLYALAELL 328 (329)
T ss_pred CcCHHHHHHHHHHHh
Confidence 999999999998765
No 160
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.92 E-value=1.7e-23 Score=146.32 Aligned_cols=163 Identities=26% Similarity=0.318 Sum_probs=119.0
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhcCCccc-ccCccceeEEEEEE--C--CeEEEEEEcCCChhhHHHHHhhccCCCEEE
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKLGEIVT-TTPTIGFNVEAVEY--K--NKSFCVWDVGGQNKIRALWRHYFRDTLGLT 89 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~~-~~~~~~~~~~~~~~--~--~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii 89 (181)
+..++|+++|++|+|||||++++.++.+.. +.+|.+........ . ...+.+|||+|+++++..+..++..+++++
T Consensus 3 ~~~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l 82 (219)
T COG1100 3 MKEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGIL 82 (219)
T ss_pred cceEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEE
Confidence 345899999999999999999999998765 44555544333222 2 577999999999999999999999999999
Q ss_pred EEEECCCcccHHHH-HHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHH-HHhhh----------Ccc-ccCCccEEEE
Q 030233 90 FVVDSSDRERISEA-RNELHQILSDNELSNAALLVFANKQDLPNVMPTAE-VADKL----------ELY-SLGQRRWSIQ 156 (181)
Q Consensus 90 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~-~~~~~----------~~~-~~~~~~~~~~ 156 (181)
+|+|..+..++.+. ..|...+... .....|+++++||+|+........ +.... ... ........++
T Consensus 83 ~~~d~~~~~~~~~~~~~~~~~l~~~-~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (219)
T COG1100 83 IVYDSTLRESSDELTEEWLEELREL-APDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALL 161 (219)
T ss_pred EEEecccchhhhHHHHHHHHHHHHh-CCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhccccee
Confidence 99999985555554 4555555443 224799999999999987543221 11110 000 0011233499
Q ss_pred Eeecc--CCCCHHHHHHHHHhhhh
Q 030233 157 SCSAI--SGQGLYEGLDWLSNNIS 178 (181)
Q Consensus 157 ~~Sa~--~~~~i~~l~~~i~~~~~ 178 (181)
++|++ ++.++.++|..+...+.
T Consensus 162 ~~s~~~~~~~~v~~~~~~~~~~~~ 185 (219)
T COG1100 162 ETSAKSLTGPNVNELFKELLRKLL 185 (219)
T ss_pred EeecccCCCcCHHHHHHHHHHHHH
Confidence 99999 99999999999988775
No 161
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.92 E-value=1.7e-23 Score=138.89 Aligned_cols=145 Identities=20% Similarity=0.198 Sum_probs=99.7
Q ss_pred EEEcCCCCChHHHHHhhhcCCcccccCc----cceeEEEEEECCeEEEEEEcCCChhhHH--------HHHhhccCCCEE
Q 030233 21 LMVGLDASGKTTILYKMKLGEIVTTTPT----IGFNVEAVEYKNKSFCVWDVGGQNKIRA--------LWRHYFRDTLGL 88 (181)
Q Consensus 21 ~~~G~~~~GKssl~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~i~d~~g~~~~~~--------~~~~~~~~~d~i 88 (181)
+++|.+|+|||||++++++.......+. ...........+..+.+|||||...+.. .+...++.+|++
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~i 80 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADVI 80 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEE
Confidence 4799999999999999998763222222 2233344555778999999999876433 345567889999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCCCHHH
Q 030233 89 TFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYE 168 (181)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (181)
++|+|..+..+... .++...+.. .+.|+++|+||+|+.+.... ....... . ..+++++||++|.|+++
T Consensus 81 i~v~d~~~~~~~~~--~~~~~~~~~---~~~piiiv~nK~D~~~~~~~---~~~~~~~--~--~~~~~~~Sa~~~~gv~~ 148 (157)
T cd01894 81 LFVVDGREGLTPAD--EEIAKYLRK---SKKPVILVVNKVDNIKEEDE---AAEFYSL--G--FGEPIPISAEHGRGIGD 148 (157)
T ss_pred EEEEeccccCCccH--HHHHHHHHh---cCCCEEEEEECcccCChHHH---HHHHHhc--C--CCCeEEEecccCCCHHH
Confidence 99999976543332 233333333 35999999999999763322 1111111 1 11589999999999999
Q ss_pred HHHHHHhhh
Q 030233 169 GLDWLSNNI 177 (181)
Q Consensus 169 l~~~i~~~~ 177 (181)
+++++.+.+
T Consensus 149 l~~~l~~~~ 157 (157)
T cd01894 149 LLDAILELL 157 (157)
T ss_pred HHHHHHhhC
Confidence 999998753
No 162
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.92 E-value=1.6e-23 Score=144.03 Aligned_cols=164 Identities=16% Similarity=0.190 Sum_probs=109.6
Q ss_pred hhhCCCCccEEEEEcCCCCChHHHHHhhhcCC-cccccCccceeEEEEEE-CCeEEEEEEcCCC----------hhhHHH
Q 030233 10 KRFFPQCRIKLLMVGLDASGKTTILYKMKLGE-IVTTTPTIGFNVEAVEY-KNKSFCVWDVGGQ----------NKIRAL 77 (181)
Q Consensus 10 ~~~~~~~~~~i~~~G~~~~GKssl~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~i~d~~g~----------~~~~~~ 77 (181)
+...+...++|+++|.+|+|||||++++++.. .....++++.+.....+ .+..+.+|||||. +.+...
T Consensus 17 ~~~~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~~~ 96 (196)
T PRK00454 17 EQLPPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEVNDKLRLVDLPGYGYAKVSKEEKEKWQKL 96 (196)
T ss_pred hhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEecCCeEEEeCCCCCCCcCCCchHHHHHHHH
Confidence 34455677899999999999999999999876 45556666644332212 2578999999994 334444
Q ss_pred HHhhccC---CCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEE
Q 030233 78 WRHYFRD---TLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWS 154 (181)
Q Consensus 78 ~~~~~~~---~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (181)
...++.. ++++++|+|..++.+... .++...+.. .+.|+++++||+|+.+....+......... .......
T Consensus 97 ~~~~~~~~~~~~~~~~v~d~~~~~~~~~--~~i~~~l~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~-l~~~~~~ 170 (196)
T PRK00454 97 IEEYLRTRENLKGVVLLIDSRHPLKELD--LQMIEWLKE---YGIPVLIVLTKADKLKKGERKKQLKKVRKA-LKFGDDE 170 (196)
T ss_pred HHHHHHhCccceEEEEEEecCCCCCHHH--HHHHHHHHH---cCCcEEEEEECcccCCHHHHHHHHHHHHHH-HHhcCCc
Confidence 4445543 467888899876544322 222233332 368999999999987643333322222111 1111457
Q ss_pred EEEeeccCCCCHHHHHHHHHhhhhc
Q 030233 155 IQSCSAISGQGLYEGLDWLSNNISV 179 (181)
Q Consensus 155 ~~~~Sa~~~~~i~~l~~~i~~~~~~ 179 (181)
++++||++|+|++++++.|.+.+.+
T Consensus 171 ~~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 171 VILFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 9999999999999999999988764
No 163
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.92 E-value=5.4e-23 Score=138.47 Aligned_cols=155 Identities=19% Similarity=0.173 Sum_probs=103.9
Q ss_pred ccEEEEEcCCCCChHHHHHhhhcCCcccccC----ccceeEEEEEECCeEEEEEEcCCChhh----------H-HHHHhh
Q 030233 17 RIKLLMVGLDASGKTTILYKMKLGEIVTTTP----TIGFNVEAVEYKNKSFCVWDVGGQNKI----------R-ALWRHY 81 (181)
Q Consensus 17 ~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~i~d~~g~~~~----------~-~~~~~~ 81 (181)
.++|+++|++|+|||||++++++.......+ +.......+...+..+.+|||||.... . ......
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~ 81 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKA 81 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHHH
Confidence 5789999999999999999999876322111 112222334557778999999995432 1 112235
Q ss_pred ccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhhCccccCCccEEEEEee
Q 030233 82 FRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV--MPTAEVADKLELYSLGQRRWSIQSCS 159 (181)
Q Consensus 82 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (181)
+..+|++++|+|+.++.+.... ..+..+ .. .+.|+++++||+|+.+. ...+.+..............+++++|
T Consensus 82 ~~~~d~vi~v~d~~~~~~~~~~-~~~~~~-~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 156 (174)
T cd01895 82 IERADVVLLVIDATEGITEQDL-RIAGLI-LE---EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFIS 156 (174)
T ss_pred HhhcCeEEEEEeCCCCcchhHH-HHHHHH-Hh---cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEEe
Confidence 6789999999999887665443 222222 22 36899999999998764 23333333332221122345799999
Q ss_pred ccCCCCHHHHHHHHHhh
Q 030233 160 AISGQGLYEGLDWLSNN 176 (181)
Q Consensus 160 a~~~~~i~~l~~~i~~~ 176 (181)
|++++|++++++++.+.
T Consensus 157 a~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 157 ALTGQGVDKLFDAIDEV 173 (174)
T ss_pred ccCCCCHHHHHHHHHHh
Confidence 99999999999998763
No 164
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.92 E-value=1.3e-23 Score=139.72 Aligned_cols=146 Identities=21% Similarity=0.148 Sum_probs=101.3
Q ss_pred EEcCCCCChHHHHHhhhcCCcc-ccc--CccceeEEEEEECCeEEEEEEcCCChhhHH------HHHhhcc--CCCEEEE
Q 030233 22 MVGLDASGKTTILYKMKLGEIV-TTT--PTIGFNVEAVEYKNKSFCVWDVGGQNKIRA------LWRHYFR--DTLGLTF 90 (181)
Q Consensus 22 ~~G~~~~GKssl~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~------~~~~~~~--~~d~ii~ 90 (181)
++|.+|+|||||++++++.... ... .|.......+.+.+..+.+|||||...+.. .+..++. .+|++++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~ 80 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVN 80 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEE
Confidence 5899999999999999987622 222 233344455666778999999999765442 3455554 8999999
Q ss_pred EEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHH
Q 030233 91 VVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGL 170 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 170 (181)
|+|+.+++.. ..++..+.. .++|+++|+||+|+.+..........+. ...+.+++++||.+|.|+++++
T Consensus 81 v~d~~~~~~~---~~~~~~~~~----~~~~~iiv~NK~Dl~~~~~~~~~~~~~~----~~~~~~~~~iSa~~~~~~~~l~ 149 (158)
T cd01879 81 VVDATNLERN---LYLTLQLLE----LGLPVVVALNMIDEAEKRGIKIDLDKLS----ELLGVPVVPTSARKGEGIDELK 149 (158)
T ss_pred EeeCCcchhH---HHHHHHHHH----cCCCEEEEEehhhhcccccchhhHHHHH----HhhCCCeEEEEccCCCCHHHHH
Confidence 9999875442 233333322 3689999999999965432222111111 1224579999999999999999
Q ss_pred HHHHhhhh
Q 030233 171 DWLSNNIS 178 (181)
Q Consensus 171 ~~i~~~~~ 178 (181)
+++.+.+.
T Consensus 150 ~~l~~~~~ 157 (158)
T cd01879 150 DAIAELAE 157 (158)
T ss_pred HHHHHHhc
Confidence 99988653
No 165
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.91 E-value=9.8e-24 Score=155.65 Aligned_cols=148 Identities=26% Similarity=0.333 Sum_probs=115.2
Q ss_pred cEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEE----EEECCeEEEEEEcCCCh---------hhHHHHHhhccC
Q 030233 18 IKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEA----VEYKNKSFCVWDVGGQN---------KIRALWRHYFRD 84 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~i~d~~g~~---------~~~~~~~~~~~~ 84 (181)
..|+++|.|++|||||+||+++....-...++|++.+. ..+.+..+.++||+|-+ ....+....+..
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~e 83 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEE 83 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHh
Confidence 67999999999999999999999877777777776654 55678889999999944 234457778889
Q ss_pred CCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCC
Q 030233 85 TLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQ 164 (181)
Q Consensus 85 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (181)
+|++++|+|.. +++...++.+..++.. .+.|+++|+||+|... .++....+-...++ .++.+||.+|.
T Consensus 84 ADvilfvVD~~--~Git~~D~~ia~~Lr~---~~kpviLvvNK~D~~~---~e~~~~efyslG~g----~~~~ISA~Hg~ 151 (444)
T COG1160 84 ADVILFVVDGR--EGITPADEEIAKILRR---SKKPVILVVNKIDNLK---AEELAYEFYSLGFG----EPVPISAEHGR 151 (444)
T ss_pred CCEEEEEEeCC--CCCCHHHHHHHHHHHh---cCCCEEEEEEcccCch---hhhhHHHHHhcCCC----CceEeehhhcc
Confidence 99999999994 5566667777666664 5799999999999763 33322222211112 58999999999
Q ss_pred CHHHHHHHHHhhh
Q 030233 165 GLYEGLDWLSNNI 177 (181)
Q Consensus 165 ~i~~l~~~i~~~~ 177 (181)
|+.+|.+.+.+.+
T Consensus 152 Gi~dLld~v~~~l 164 (444)
T COG1160 152 GIGDLLDAVLELL 164 (444)
T ss_pred CHHHHHHHHHhhc
Confidence 9999999999886
No 166
>PRK00089 era GTPase Era; Reviewed
Probab=99.91 E-value=3e-23 Score=150.90 Aligned_cols=156 Identities=20% Similarity=0.179 Sum_probs=107.0
Q ss_pred CccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEE----EEECCeEEEEEEcCCChhh--------HHHHHhhcc
Q 030233 16 CRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEA----VEYKNKSFCVWDVGGQNKI--------RALWRHYFR 83 (181)
Q Consensus 16 ~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~i~d~~g~~~~--------~~~~~~~~~ 83 (181)
+.-.|+++|.+|+|||||+|++++.......+.+.++... ....+.++.++||||.... .......+.
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~ 83 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLK 83 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHHHh
Confidence 4557999999999999999999998765444433333322 2225579999999995432 223445677
Q ss_pred CCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC-CCHHHHHhhhCccccCCccEEEEEeeccC
Q 030233 84 DTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV-MPTAEVADKLELYSLGQRRWSIQSCSAIS 162 (181)
Q Consensus 84 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (181)
.+|++++|+|+++. +.....++...+.. .+.|+++|+||+|+... .........+.. ......++++||++
T Consensus 84 ~~D~il~vvd~~~~--~~~~~~~i~~~l~~---~~~pvilVlNKiDl~~~~~~l~~~~~~l~~---~~~~~~i~~iSA~~ 155 (292)
T PRK00089 84 DVDLVLFVVDADEK--IGPGDEFILEKLKK---VKTPVILVLNKIDLVKDKEELLPLLEELSE---LMDFAEIVPISALK 155 (292)
T ss_pred cCCEEEEEEeCCCC--CChhHHHHHHHHhh---cCCCEEEEEECCcCCCCHHHHHHHHHHHHh---hCCCCeEEEecCCC
Confidence 89999999999873 22333444444333 46899999999999732 222222222211 11245799999999
Q ss_pred CCCHHHHHHHHHhhhhc
Q 030233 163 GQGLYEGLDWLSNNISV 179 (181)
Q Consensus 163 ~~~i~~l~~~i~~~~~~ 179 (181)
|.|++++++++.+.+.+
T Consensus 156 ~~gv~~L~~~L~~~l~~ 172 (292)
T PRK00089 156 GDNVDELLDVIAKYLPE 172 (292)
T ss_pred CCCHHHHHHHHHHhCCC
Confidence 99999999999988754
No 167
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.91 E-value=2.4e-23 Score=143.79 Aligned_cols=160 Identities=15% Similarity=0.099 Sum_probs=102.7
Q ss_pred cEEEEEcCCCCChHHHHHhhhcCCccc------ccCccceeEEEEEEC---------------------------C----
Q 030233 18 IKLLMVGLDASGKTTILYKMKLGEIVT------TTPTIGFNVEAVEYK---------------------------N---- 60 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~~~~~~------~~~~~~~~~~~~~~~---------------------------~---- 60 (181)
++|+++|+.|+|||||+..+.+..... ...+.......+.+. +
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 478999999999999999997652110 111111111111110 2
Q ss_pred --eEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHH
Q 030233 61 --KSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAE 138 (181)
Q Consensus 61 --~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~ 138 (181)
..+.+|||||++.+...+...+..+|++++|+|+.++.........+..+... ...|+++++||+|+.+......
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~---~~~~iiivvNK~Dl~~~~~~~~ 157 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM---GLKHIIIVQNKIDLVKEEQALE 157 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc---CCCcEEEEEEchhccCHHHHHH
Confidence 68999999999999888888888999999999998632111112222222111 2357999999999875322221
Q ss_pred HHhhhCc--cccCCccEEEEEeeccCCCCHHHHHHHHHhhhhcc
Q 030233 139 VADKLEL--YSLGQRRWSIQSCSAISGQGLYEGLDWLSNNISVK 180 (181)
Q Consensus 139 ~~~~~~~--~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~ 180 (181)
..+.... ........+++++||++|+|++++++++.+.+...
T Consensus 158 ~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~~ 201 (203)
T cd01888 158 NYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPTP 201 (203)
T ss_pred HHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCCC
Confidence 1111111 00112345799999999999999999999887653
No 168
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.91 E-value=7.3e-24 Score=138.45 Aligned_cols=141 Identities=19% Similarity=0.243 Sum_probs=96.5
Q ss_pred cEEEEEcCCCCChHHHHHhhhcCCccc---ccCccceeEEEEEECCeEEEEEEcCCC------hhhHHHHHhhc--cCCC
Q 030233 18 IKLLMVGLDASGKTTILYKMKLGEIVT---TTPTIGFNVEAVEYKNKSFCVWDVGGQ------NKIRALWRHYF--RDTL 86 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~i~d~~g~------~~~~~~~~~~~--~~~d 86 (181)
++|+++|.|++|||||+|++.|..... ...|.......+.+.+..+.++|+||- .........++ ...|
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D 80 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKPD 80 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSSS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCC
Confidence 589999999999999999999988221 123344445567778999999999992 11223333443 5799
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC----CCHHHHHhhhCccccCCccEEEEEeeccC
Q 030233 87 GLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV----MPTAEVADKLELYSLGQRRWSIQSCSAIS 162 (181)
Q Consensus 87 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (181)
++++|+|+++. +........+++. ++|+++++||+|+... .+.+.+.+.+ +++++.+||++
T Consensus 81 ~ii~VvDa~~l---~r~l~l~~ql~e~----g~P~vvvlN~~D~a~~~g~~id~~~Ls~~L--------g~pvi~~sa~~ 145 (156)
T PF02421_consen 81 LIIVVVDATNL---ERNLYLTLQLLEL----GIPVVVVLNKMDEAERKGIEIDAEKLSERL--------GVPVIPVSART 145 (156)
T ss_dssp EEEEEEEGGGH---HHHHHHHHHHHHT----TSSEEEEEETHHHHHHTTEEE-HHHHHHHH--------TS-EEEEBTTT
T ss_pred EEEEECCCCCH---HHHHHHHHHHHHc----CCCEEEEEeCHHHHHHcCCEECHHHHHHHh--------CCCEEEEEeCC
Confidence 99999999763 3333334444443 7999999999997543 2334454444 34799999999
Q ss_pred CCCHHHHHHHH
Q 030233 163 GQGLYEGLDWL 173 (181)
Q Consensus 163 ~~~i~~l~~~i 173 (181)
++|++++++.|
T Consensus 146 ~~g~~~L~~~I 156 (156)
T PF02421_consen 146 GEGIDELKDAI 156 (156)
T ss_dssp TBTHHHHHHHH
T ss_pred CcCHHHHHhhC
Confidence 99999999875
No 169
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.91 E-value=7.5e-23 Score=136.81 Aligned_cols=154 Identities=21% Similarity=0.192 Sum_probs=103.5
Q ss_pred CccEEEEEcCCCCChHHHHHhhhcCCcccccCcccee----EEEEEECCeEEEEEEcCCChhhH--------HHHHhhcc
Q 030233 16 CRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFN----VEAVEYKNKSFCVWDVGGQNKIR--------ALWRHYFR 83 (181)
Q Consensus 16 ~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~i~d~~g~~~~~--------~~~~~~~~ 83 (181)
...+|+++|++|+|||||+|++++.......+..... ..........+.+|||||..... ......+.
T Consensus 2 ~~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 81 (168)
T cd04163 2 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALK 81 (168)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHH
Confidence 4578999999999999999999987643332222221 11233356789999999964322 23344577
Q ss_pred CCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC-CCCHHHHHhhhCccccCCccEEEEEeeccC
Q 030233 84 DTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPN-VMPTAEVADKLELYSLGQRRWSIQSCSAIS 162 (181)
Q Consensus 84 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (181)
.+|++++|+|+.++ +.....++...+.. .+.|+++++||+|+.. .....+....+.. .....+++++|+++
T Consensus 82 ~~d~i~~v~d~~~~--~~~~~~~~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~---~~~~~~~~~~s~~~ 153 (168)
T cd04163 82 DVDLVLFVVDASEP--IGEGDEFILELLKK---SKTPVILVLNKIDLVKDKEDLLPLLEKLKE---LGPFAEIFPISALK 153 (168)
T ss_pred hCCEEEEEEECCCc--cCchHHHHHHHHHH---hCCCEEEEEEchhccccHHHHHHHHHHHHh---ccCCCceEEEEecc
Confidence 89999999999876 22223333333333 2689999999999873 2223333333322 12235799999999
Q ss_pred CCCHHHHHHHHHhhh
Q 030233 163 GQGLYEGLDWLSNNI 177 (181)
Q Consensus 163 ~~~i~~l~~~i~~~~ 177 (181)
+.|++++++.|.+.+
T Consensus 154 ~~~~~~l~~~l~~~~ 168 (168)
T cd04163 154 GENVDELLEEIVKYL 168 (168)
T ss_pred CCChHHHHHHHHhhC
Confidence 999999999998753
No 170
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.91 E-value=7.5e-23 Score=163.78 Aligned_cols=159 Identities=16% Similarity=0.094 Sum_probs=110.3
Q ss_pred CccEEEEEcCCCCChHHHHHhhhcCCcccccC----ccceeEEEEEECCeEEEEEEcCCCh----------hhHHH-HHh
Q 030233 16 CRIKLLMVGLDASGKTTILYKMKLGEIVTTTP----TIGFNVEAVEYKNKSFCVWDVGGQN----------KIRAL-WRH 80 (181)
Q Consensus 16 ~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~i~d~~g~~----------~~~~~-~~~ 80 (181)
..++|+++|.+|+|||||+|++++.......+ |.......+.+.+..+.+|||||.. .+... ...
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~ 528 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQA 528 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHHHH
Confidence 35899999999999999999999887422222 2222233455678889999999942 22222 234
Q ss_pred hccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeec
Q 030233 81 YFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSA 160 (181)
Q Consensus 81 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (181)
.++.+|++++|+|+++..+.+... ++..+.. .+.|+++|+||+|+.+....+.+..............+++++||
T Consensus 529 ~i~~advvilViDat~~~s~~~~~-i~~~~~~----~~~piIiV~NK~DL~~~~~~~~~~~~~~~~l~~~~~~~ii~iSA 603 (712)
T PRK09518 529 AIERSELALFLFDASQPISEQDLK-VMSMAVD----AGRALVLVFNKWDLMDEFRRQRLERLWKTEFDRVTWARRVNLSA 603 (712)
T ss_pred HhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH----cCCCEEEEEEchhcCChhHHHHHHHHHHHhccCCCCCCEEEEEC
Confidence 568899999999999887776654 3333332 36899999999999764333333333322111223446899999
Q ss_pred cCCCCHHHHHHHHHhhhhc
Q 030233 161 ISGQGLYEGLDWLSNNISV 179 (181)
Q Consensus 161 ~~~~~i~~l~~~i~~~~~~ 179 (181)
++|.|++++++.+.+...+
T Consensus 604 ktg~gv~~L~~~i~~~~~~ 622 (712)
T PRK09518 604 KTGWHTNRLAPAMQEALES 622 (712)
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999887654
No 171
>COG1159 Era GTPase [General function prediction only]
Probab=99.91 E-value=3.8e-23 Score=145.15 Aligned_cols=157 Identities=17% Similarity=0.150 Sum_probs=116.0
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEE----EEECCeEEEEEEcCCCh--------hhHHHHHhhc
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEA----VEYKNKSFCVWDVGGQN--------KIRALWRHYF 82 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~i~d~~g~~--------~~~~~~~~~~ 82 (181)
++.-.|+++|.|++|||||+|+++|.+..-.++.+.++... +..++.++.+.||||-+ .+.......+
T Consensus 4 ~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl 83 (298)
T COG1159 4 FKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSAL 83 (298)
T ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHh
Confidence 34557899999999999999999999977766666655544 33478999999999932 2334466777
Q ss_pred cCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC-HHHHHhhhCccccCCccEEEEEeecc
Q 030233 83 RDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMP-TAEVADKLELYSLGQRRWSIQSCSAI 161 (181)
Q Consensus 83 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (181)
.++|++++|+|++++ +...+.++...+.. .+.|+++++||.|...... ...+...+.. ......++++||+
T Consensus 84 ~dvDlilfvvd~~~~--~~~~d~~il~~lk~---~~~pvil~iNKID~~~~~~~l~~~~~~~~~---~~~f~~ivpiSA~ 155 (298)
T COG1159 84 KDVDLILFVVDADEG--WGPGDEFILEQLKK---TKTPVILVVNKIDKVKPKTVLLKLIAFLKK---LLPFKEIVPISAL 155 (298)
T ss_pred ccCcEEEEEEecccc--CCccHHHHHHHHhh---cCCCeEEEEEccccCCcHHHHHHHHHHHHh---hCCcceEEEeecc
Confidence 899999999999864 33344555554444 4689999999999877554 2333333322 2233379999999
Q ss_pred CCCCHHHHHHHHHhhhhc
Q 030233 162 SGQGLYEGLDWLSNNISV 179 (181)
Q Consensus 162 ~~~~i~~l~~~i~~~~~~ 179 (181)
+|.|++.+.+.+...+.+
T Consensus 156 ~g~n~~~L~~~i~~~Lpe 173 (298)
T COG1159 156 KGDNVDTLLEIIKEYLPE 173 (298)
T ss_pred ccCCHHHHHHHHHHhCCC
Confidence 999999999999988765
No 172
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.91 E-value=3e-23 Score=140.79 Aligned_cols=149 Identities=17% Similarity=0.242 Sum_probs=97.4
Q ss_pred hhCCCCccEEEEEcCCCCChHHHHHhhhcCC-cccccCccceeEEEEEE-CCeEEEEEEcCCCh----------hhHHHH
Q 030233 11 RFFPQCRIKLLMVGLDASGKTTILYKMKLGE-IVTTTPTIGFNVEAVEY-KNKSFCVWDVGGQN----------KIRALW 78 (181)
Q Consensus 11 ~~~~~~~~~i~~~G~~~~GKssl~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~i~d~~g~~----------~~~~~~ 78 (181)
.+.+.+.++|+++|++|+|||||+|++++.. ...+.++.+.+.....+ .+..+.+|||||.. .+....
T Consensus 12 ~~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 91 (179)
T TIGR03598 12 QLPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVNDGFRLVDLPGYGYAKVSKEEKEKWQKLI 91 (179)
T ss_pred hCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCCcEEEEeCCCCccccCChhHHHHHHHHH
Confidence 3445678999999999999999999999886 44455555544332211 12479999999942 233344
Q ss_pred Hhhcc---CCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH----HHHHhhhCccccCCc
Q 030233 79 RHYFR---DTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPT----AEVADKLELYSLGQR 151 (181)
Q Consensus 79 ~~~~~---~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~----~~~~~~~~~~~~~~~ 151 (181)
..+++ .++++++|+|++++.+.... .+...+.. .+.|+++++||+|+...... +++.+.+... ..
T Consensus 92 ~~~l~~~~~~~~ii~vvd~~~~~~~~~~--~~~~~~~~---~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~---~~ 163 (179)
T TIGR03598 92 EEYLEKRENLKGVVLLMDIRHPLKELDL--EMLEWLRE---RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKD---AD 163 (179)
T ss_pred HHHHHhChhhcEEEEEecCCCCCCHHHH--HHHHHHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhc---cC
Confidence 44544 45899999999875443333 22233332 47899999999998753322 2222222211 12
Q ss_pred cEEEEEeeccCCCCHH
Q 030233 152 RWSIQSCSAISGQGLY 167 (181)
Q Consensus 152 ~~~~~~~Sa~~~~~i~ 167 (181)
.++++++||++|+|++
T Consensus 164 ~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 164 DPSVQLFSSLKKTGID 179 (179)
T ss_pred CCceEEEECCCCCCCC
Confidence 3479999999999974
No 173
>PRK11058 GTPase HflX; Provisional
Probab=99.91 E-value=2e-22 Score=152.07 Aligned_cols=152 Identities=17% Similarity=0.175 Sum_probs=105.2
Q ss_pred cEEEEEcCCCCChHHHHHhhhcCCcc---cccCccceeEEEEEECCe-EEEEEEcCCChhh--HHH------HHhhccCC
Q 030233 18 IKLLMVGLDASGKTTILYKMKLGEIV---TTTPTIGFNVEAVEYKNK-SFCVWDVGGQNKI--RAL------WRHYFRDT 85 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~~~i~d~~g~~~~--~~~------~~~~~~~~ 85 (181)
++|+++|.+|+|||||+|++++.... ....|.......+.+.+. .+.+|||+|.... ... ....+..+
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~A 277 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQETRQA 277 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCCCeEEEEecCcccccCCHHHHHHHHHHHHHhhcC
Confidence 68999999999999999999987632 224455555556666554 8899999996321 111 22345789
Q ss_pred CEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEE-EEEeeccCCC
Q 030233 86 LGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWS-IQSCSAISGQ 164 (181)
Q Consensus 86 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~ 164 (181)
|++++|+|++++.+......+...+ ......+.|+++|+||+|+.+... ...... . .+.+ ++.+||++|+
T Consensus 278 DlIL~VvDaS~~~~~e~l~~v~~iL-~el~~~~~pvIiV~NKiDL~~~~~-~~~~~~-~------~~~~~~v~ISAktG~ 348 (426)
T PRK11058 278 TLLLHVVDAADVRVQENIEAVNTVL-EEIDAHEIPTLLVMNKIDMLDDFE-PRIDRD-E------ENKPIRVWLSAQTGA 348 (426)
T ss_pred CEEEEEEeCCCccHHHHHHHHHHHH-HHhccCCCCEEEEEEcccCCCchh-HHHHHH-h------cCCCceEEEeCCCCC
Confidence 9999999999987776654333222 211224789999999999864311 111111 0 1112 5889999999
Q ss_pred CHHHHHHHHHhhhh
Q 030233 165 GLYEGLDWLSNNIS 178 (181)
Q Consensus 165 ~i~~l~~~i~~~~~ 178 (181)
|++++++++.+.+.
T Consensus 349 GIdeL~e~I~~~l~ 362 (426)
T PRK11058 349 GIPLLFQALTERLS 362 (426)
T ss_pred CHHHHHHHHHHHhh
Confidence 99999999998874
No 174
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.91 E-value=1.1e-22 Score=155.48 Aligned_cols=158 Identities=18% Similarity=0.199 Sum_probs=109.5
Q ss_pred CccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEE----EEEECCeEEEEEEcCCChh----------hHHH-HHh
Q 030233 16 CRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVE----AVEYKNKSFCVWDVGGQNK----------IRAL-WRH 80 (181)
Q Consensus 16 ~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~d~~g~~~----------~~~~-~~~ 80 (181)
..++|+++|.+++|||||+|++++.......+..+++.. .+...+..+.+|||||... +... ...
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~ 251 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLK 251 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHHH
Confidence 468999999999999999999998764333333444333 2345778899999999532 1111 234
Q ss_pred hccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeec
Q 030233 81 YFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSA 160 (181)
Q Consensus 81 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (181)
+++.+|++++|+|++++.+.+... .+..+ .. .+.|+++++||+|+.+....+++...+..........+++++||
T Consensus 252 ~~~~ad~~ilViD~~~~~~~~~~~-i~~~~-~~---~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~i~~~SA 326 (435)
T PRK00093 252 AIERADVVLLVIDATEGITEQDLR-IAGLA-LE---AGRALVIVVNKWDLVDEKTMEEFKKELRRRLPFLDYAPIVFISA 326 (435)
T ss_pred HHHHCCEEEEEEeCCCCCCHHHHH-HHHHH-HH---cCCcEEEEEECccCCCHHHHHHHHHHHHHhcccccCCCEEEEeC
Confidence 677899999999999776554432 22222 22 36899999999999753333444444332222334568999999
Q ss_pred cCCCCHHHHHHHHHhhhh
Q 030233 161 ISGQGLYEGLDWLSNNIS 178 (181)
Q Consensus 161 ~~~~~i~~l~~~i~~~~~ 178 (181)
++|.|++++++.+.+...
T Consensus 327 ~~~~gv~~l~~~i~~~~~ 344 (435)
T PRK00093 327 LTGQGVDKLLEAIDEAYE 344 (435)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999999876543
No 175
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.91 E-value=7.1e-23 Score=136.05 Aligned_cols=142 Identities=19% Similarity=0.193 Sum_probs=95.9
Q ss_pred EEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEECCeEEEEEEcCCC----hhhHHHHHhhccCCCEEEEEEEC
Q 030233 19 KLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQ----NKIRALWRHYFRDTLGLTFVVDS 94 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~----~~~~~~~~~~~~~~d~ii~v~d~ 94 (181)
+|+++|.+++|||||+|++.+.... ..++.++ .+... .+|||||. .++.......+..+|++++|+|+
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~-~~~~~~v-----~~~~~--~~iDtpG~~~~~~~~~~~~~~~~~~ad~il~v~d~ 74 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTL-ARKTQAV-----EFNDK--GDIDTPGEYFSHPRWYHALITTLQDVDMLIYVHGA 74 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcc-CccceEE-----EECCC--CcccCCccccCCHHHHHHHHHHHhcCCEEEEEEeC
Confidence 6999999999999999998865421 1222222 22221 37999996 22222223457889999999999
Q ss_pred CCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHHHHHH
Q 030233 95 SDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLS 174 (181)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~ 174 (181)
++.+++. ..++..+ . .+.|+++++||+|+.+ ...+.+.+..... ....+++++||++|+|++++|+++.
T Consensus 75 ~~~~s~~--~~~~~~~--~---~~~~ii~v~nK~Dl~~-~~~~~~~~~~~~~---~~~~p~~~~Sa~~g~gi~~l~~~l~ 143 (158)
T PRK15467 75 NDPESRL--PAGLLDI--G---VSKRQIAVISKTDMPD-ADVAATRKLLLET---GFEEPIFELNSHDPQSVQQLVDYLA 143 (158)
T ss_pred CCccccc--CHHHHhc--c---CCCCeEEEEEccccCc-ccHHHHHHHHHHc---CCCCCEEEEECCCccCHHHHHHHHH
Confidence 9876652 2344332 1 3578999999999854 3344433332211 1124899999999999999999998
Q ss_pred hhhhc
Q 030233 175 NNISV 179 (181)
Q Consensus 175 ~~~~~ 179 (181)
+.+.+
T Consensus 144 ~~~~~ 148 (158)
T PRK15467 144 SLTKQ 148 (158)
T ss_pred Hhchh
Confidence 87754
No 176
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.90 E-value=1.1e-22 Score=139.04 Aligned_cols=157 Identities=21% Similarity=0.218 Sum_probs=113.1
Q ss_pred CccEEEEEcCCCCChHHHHHhhhcCCc--c-------------------cccCccceeEEEEE--ECCeEEEEEEcCCCh
Q 030233 16 CRIKLLMVGLDASGKTTILYKMKLGEI--V-------------------TTTPTIGFNVEAVE--YKNKSFCVWDVGGQN 72 (181)
Q Consensus 16 ~~~~i~~~G~~~~GKssl~~~~~~~~~--~-------------------~~~~~~~~~~~~~~--~~~~~~~i~d~~g~~ 72 (181)
+..+|+++|+.++|||||+.++....- . ....|.......+. .....+.++|+||+.
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 457899999999999999999985331 0 12345556666677 789999999999999
Q ss_pred hhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhC-----ccc
Q 030233 73 KIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLE-----LYS 147 (181)
Q Consensus 73 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~-----~~~ 147 (181)
+|.......+..+|++|+|+|+.+.-.- ...+.+..+.. .++|+++++||+|+.. ...++..+... ...
T Consensus 82 ~f~~~~~~~~~~~D~ailvVda~~g~~~-~~~~~l~~~~~----~~~p~ivvlNK~D~~~-~~~~~~~~~~~~~l~~~~~ 155 (188)
T PF00009_consen 82 DFIKEMIRGLRQADIAILVVDANDGIQP-QTEEHLKILRE----LGIPIIVVLNKMDLIE-KELEEIIEEIKEKLLKEYG 155 (188)
T ss_dssp HHHHHHHHHHTTSSEEEEEEETTTBSTH-HHHHHHHHHHH----TT-SEEEEEETCTSSH-HHHHHHHHHHHHHHHHHTT
T ss_pred ceeecccceecccccceeeeeccccccc-ccccccccccc----cccceEEeeeeccchh-hhHHHHHHHHHHHhccccc
Confidence 9999988999999999999999865222 22333333333 3788999999999882 22222222211 111
Q ss_pred cCC-ccEEEEEeeccCCCCHHHHHHHHHhhhh
Q 030233 148 LGQ-RRWSIQSCSAISGQGLYEGLDWLSNNIS 178 (181)
Q Consensus 148 ~~~-~~~~~~~~Sa~~~~~i~~l~~~i~~~~~ 178 (181)
... ...+++++||.+|.|+++|++.+.+.++
T Consensus 156 ~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 156 ENGEEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp STTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred cCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 121 3689999999999999999999998775
No 177
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.90 E-value=2.3e-25 Score=144.45 Aligned_cols=160 Identities=17% Similarity=0.252 Sum_probs=128.9
Q ss_pred CccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEEE----EEECCeEEEEEEcCCChhhHHHHHhhccCCCEEEE
Q 030233 16 CRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVEA----VEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTF 90 (181)
Q Consensus 16 ~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~~----~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~ 90 (181)
.-++++++|..++||||++.++|.+-|. .+..|+|++... +..++....+||++|++++..+...+++++++.++
T Consensus 19 ~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~vL 98 (246)
T KOG4252|consen 19 RAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASVL 98 (246)
T ss_pred hhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccceEE
Confidence 4589999999999999999999988754 466677755432 33367788899999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHH
Q 030233 91 VVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGL 170 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 170 (181)
||+.+|+.||+...+|+.++.... .++|.++|-||+|+.+... +...+....++..+..++.+|++...|+..+|
T Consensus 99 VFSTTDr~SFea~~~w~~kv~~e~--~~IPtV~vqNKIDlveds~---~~~~evE~lak~l~~RlyRtSvked~NV~~vF 173 (246)
T KOG4252|consen 99 VFSTTDRYSFEATLEWYNKVQKET--ERIPTVFVQNKIDLVEDSQ---MDKGEVEGLAKKLHKRLYRTSVKEDFNVMHVF 173 (246)
T ss_pred EEecccHHHHHHHHHHHHHHHHHh--ccCCeEEeeccchhhHhhh---cchHHHHHHHHHhhhhhhhhhhhhhhhhHHHH
Confidence 999999999999999999987664 5899999999999976322 11111111123344468999999999999999
Q ss_pred HHHHhhhhcc
Q 030233 171 DWLSNNISVK 180 (181)
Q Consensus 171 ~~i~~~~~~~ 180 (181)
.+|++++.++
T Consensus 174 ~YLaeK~~q~ 183 (246)
T KOG4252|consen 174 AYLAEKLTQQ 183 (246)
T ss_pred HHHHHHHHHH
Confidence 9999987653
No 178
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.90 E-value=8.9e-23 Score=155.72 Aligned_cols=149 Identities=22% Similarity=0.248 Sum_probs=106.5
Q ss_pred EEEEEcCCCCChHHHHHhhhcCCcccccCccce----eEEEEEECCeEEEEEEcCCC--------hhhHHHHHhhccCCC
Q 030233 19 KLLMVGLDASGKTTILYKMKLGEIVTTTPTIGF----NVEAVEYKNKSFCVWDVGGQ--------NKIRALWRHYFRDTL 86 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~i~d~~g~--------~~~~~~~~~~~~~~d 86 (181)
+|+++|.+|+|||||+|++++.......+.+++ ....+.+.+..+.+|||||. +.+......+++.+|
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad 80 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEAD 80 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCC
Confidence 489999999999999999998774333333333 34455668889999999995 445566777889999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCCCH
Q 030233 87 GLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGL 166 (181)
Q Consensus 87 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 166 (181)
++++|+|+.+..+ .....+...++. .+.|+++|+||+|+...... ..+.... ...+++++||.+|.|+
T Consensus 81 ~vl~vvD~~~~~~--~~d~~i~~~l~~---~~~piilVvNK~D~~~~~~~--~~~~~~l-----g~~~~~~vSa~~g~gv 148 (429)
T TIGR03594 81 VILFVVDGREGLT--PEDEEIAKWLRK---SGKPVILVANKIDGKKEDAV--AAEFYSL-----GFGEPIPISAEHGRGI 148 (429)
T ss_pred EEEEEEeCCCCCC--HHHHHHHHHHHH---hCCCEEEEEECccCCccccc--HHHHHhc-----CCCCeEEEeCCcCCCh
Confidence 9999999976432 222333333333 46899999999998653321 1111111 1125899999999999
Q ss_pred HHHHHHHHhhhhc
Q 030233 167 YEGLDWLSNNISV 179 (181)
Q Consensus 167 ~~l~~~i~~~~~~ 179 (181)
+++++++.+.+.+
T Consensus 149 ~~ll~~i~~~l~~ 161 (429)
T TIGR03594 149 GDLLDAILELLPE 161 (429)
T ss_pred HHHHHHHHHhcCc
Confidence 9999999887643
No 179
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.90 E-value=2e-22 Score=161.35 Aligned_cols=152 Identities=21% Similarity=0.249 Sum_probs=108.8
Q ss_pred CccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEE----EECCeEEEEEEcCCChh--------hHHHHHhhcc
Q 030233 16 CRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAV----EYKNKSFCVWDVGGQNK--------IRALWRHYFR 83 (181)
Q Consensus 16 ~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~i~d~~g~~~--------~~~~~~~~~~ 83 (181)
...+|+++|.+++|||||+|++++.......+++|++.... .+.+..+.+|||||.+. +......+++
T Consensus 274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 353 (712)
T PRK09518 274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAVS 353 (712)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHHH
Confidence 34689999999999999999999887555555666655543 34678999999999652 4455667788
Q ss_pred CCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCC
Q 030233 84 DTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISG 163 (181)
Q Consensus 84 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (181)
.+|++++|+|+.+. +......+...++. .+.|+++|+||+|+.... ......... +.. ..+++||++|
T Consensus 354 ~aD~iL~VvDa~~~--~~~~d~~i~~~Lr~---~~~pvIlV~NK~D~~~~~--~~~~~~~~l---g~~--~~~~iSA~~g 421 (712)
T PRK09518 354 LADAVVFVVDGQVG--LTSTDERIVRMLRR---AGKPVVLAVNKIDDQASE--YDAAEFWKL---GLG--EPYPISAMHG 421 (712)
T ss_pred hCCEEEEEEECCCC--CCHHHHHHHHHHHh---cCCCEEEEEECcccccch--hhHHHHHHc---CCC--CeEEEECCCC
Confidence 99999999999753 33333333333443 579999999999986432 122222211 111 2578999999
Q ss_pred CCHHHHHHHHHhhhhc
Q 030233 164 QGLYEGLDWLSNNISV 179 (181)
Q Consensus 164 ~~i~~l~~~i~~~~~~ 179 (181)
.|++++++++.+.+.+
T Consensus 422 ~GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 422 RGVGDLLDEALDSLKV 437 (712)
T ss_pred CCchHHHHHHHHhccc
Confidence 9999999999987754
No 180
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.90 E-value=2e-22 Score=153.15 Aligned_cols=157 Identities=24% Similarity=0.271 Sum_probs=106.8
Q ss_pred cEEEEEcCCCCChHHHHHhhhcCCcc--c-ccCccceeEEEEEECCeEEEEEEcCCChh----hHH---HHHhhccCCCE
Q 030233 18 IKLLMVGLDASGKTTILYKMKLGEIV--T-TTPTIGFNVEAVEYKNKSFCVWDVGGQNK----IRA---LWRHYFRDTLG 87 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~i~d~~g~~~----~~~---~~~~~~~~~d~ 87 (181)
.+|+++|.|++|||||+|++.+.... . ...|...+...+.+.+..+.+||+||... ... .....++.+++
T Consensus 160 adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhieradv 239 (500)
T PRK12296 160 ADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIERCAV 239 (500)
T ss_pred ceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHHHhcCE
Confidence 47999999999999999999876532 2 12344455566777888999999999421 111 22334567999
Q ss_pred EEEEEECCCc----ccHHHHHHHHHHHHcCC----------CCCCCeEEEEEeCCCCCCCCCHHH-HHhhhCccccCCcc
Q 030233 88 LTFVVDSSDR----ERISEARNELHQILSDN----------ELSNAALLVFANKQDLPNVMPTAE-VADKLELYSLGQRR 152 (181)
Q Consensus 88 ii~v~d~~~~----~s~~~~~~~~~~~~~~~----------~~~~~piilv~nK~D~~~~~~~~~-~~~~~~~~~~~~~~ 152 (181)
+++|+|+++. +.+.....+...+.... .....|+++|+||+|+.+.....+ +...+ ...+
T Consensus 240 Lv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~l~~~l-----~~~g 314 (500)
T PRK12296 240 LVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAEFVRPEL-----EARG 314 (500)
T ss_pred EEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHHHHHHHH-----HHcC
Confidence 9999999752 34444443333332211 234689999999999865322221 22222 1234
Q ss_pred EEEEEeeccCCCCHHHHHHHHHhhhhc
Q 030233 153 WSIQSCSAISGQGLYEGLDWLSNNISV 179 (181)
Q Consensus 153 ~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 179 (181)
++++++||++++|+++++++|.+.+..
T Consensus 315 ~~Vf~ISA~tgeGLdEL~~~L~ell~~ 341 (500)
T PRK12296 315 WPVFEVSAASREGLRELSFALAELVEE 341 (500)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 689999999999999999999887754
No 181
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.90 E-value=3.7e-22 Score=155.59 Aligned_cols=156 Identities=20% Similarity=0.224 Sum_probs=109.5
Q ss_pred CCCccEEEEEcCCCCChHHHHHhhhcCCcccc---cCccceeEEEEEECCe-EEEEEEcCCChhhHHHHHhhccCCCEEE
Q 030233 14 PQCRIKLLMVGLDASGKTTILYKMKLGEIVTT---TPTIGFNVEAVEYKNK-SFCVWDVGGQNKIRALWRHYFRDTLGLT 89 (181)
Q Consensus 14 ~~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~---~~~~~~~~~~~~~~~~-~~~i~d~~g~~~~~~~~~~~~~~~d~ii 89 (181)
..+..+|+++|++++|||||++++.+..+... ..|.......+.+.+. .+.+|||||++.|..++...+..+|+++
T Consensus 84 ~~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~~~r~rga~~aDiaI 163 (587)
T TIGR00487 84 VERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDGKMITFLDTPGHEAFTSMRARGAKVTDIVV 163 (587)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCCcEEEEEECCCCcchhhHHHhhhccCCEEE
Confidence 44678999999999999999999988765432 1233333344555444 8999999999999999998999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCcccc--C--CccEEEEEeeccCCCC
Q 030233 90 FVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSL--G--QRRWSIQSCSAISGQG 165 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~Sa~~~~~ 165 (181)
+|+|+++... ....+.+... .. .++|+++++||+|+.+. ..+.+...+..... . ....+++++||++|+|
T Consensus 164 LVVda~dgv~-~qT~e~i~~~-~~---~~vPiIVviNKiDl~~~-~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeG 237 (587)
T TIGR00487 164 LVVAADDGVM-PQTIEAISHA-KA---ANVPIIVAINKIDKPEA-NPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGDG 237 (587)
T ss_pred EEEECCCCCC-HhHHHHHHHH-HH---cCCCEEEEEECcccccC-CHHHHHHHHHHhhhhHHhcCCCceEEEEECCCCCC
Confidence 9999976321 1222222222 11 47899999999998642 33333333321110 0 1235799999999999
Q ss_pred HHHHHHHHHh
Q 030233 166 LYEGLDWLSN 175 (181)
Q Consensus 166 i~~l~~~i~~ 175 (181)
++++++++..
T Consensus 238 I~eLl~~I~~ 247 (587)
T TIGR00487 238 IDELLDMILL 247 (587)
T ss_pred hHHHHHhhhh
Confidence 9999999864
No 182
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.90 E-value=1.8e-22 Score=149.02 Aligned_cols=157 Identities=20% Similarity=0.239 Sum_probs=120.4
Q ss_pred ccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEE----EEECCeEEEEEEcCCCh----------hhHHH-HHhh
Q 030233 17 RIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEA----VEYKNKSFCVWDVGGQN----------KIRAL-WRHY 81 (181)
Q Consensus 17 ~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~i~d~~g~~----------~~~~~-~~~~ 81 (181)
.++|+++|.|++|||||+|++++.+-.-.++..|++... +++.+..+.++||+|-. .|... ....
T Consensus 178 ~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~a 257 (444)
T COG1160 178 PIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLKA 257 (444)
T ss_pred ceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhHhH
Confidence 599999999999999999999999876666666766654 44579999999999943 22222 4456
Q ss_pred ccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhhCccccCCccEEEEEee
Q 030233 82 FRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV--MPTAEVADKLELYSLGQRRWSIQSCS 159 (181)
Q Consensus 82 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (181)
+..++++++|+|++.+ +.+.+..+..+... .+.++++|+||+|+.+. ...++..+.+..........+++.+|
T Consensus 258 I~~a~vvllviDa~~~--~~~qD~~ia~~i~~---~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~iS 332 (444)
T COG1160 258 IERADVVLLVIDATEG--ISEQDLRIAGLIEE---AGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFIS 332 (444)
T ss_pred HhhcCEEEEEEECCCC--chHHHHHHHHHHHH---cCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEEE
Confidence 6789999999999754 55666666665555 58999999999999775 44455555554444345566899999
Q ss_pred ccCCCCHHHHHHHHHhhhh
Q 030233 160 AISGQGLYEGLDWLSNNIS 178 (181)
Q Consensus 160 a~~~~~i~~l~~~i~~~~~ 178 (181)
|++|.+++++|+.+.+...
T Consensus 333 A~~~~~i~~l~~~i~~~~~ 351 (444)
T COG1160 333 ALTGQGLDKLFEAIKEIYE 351 (444)
T ss_pred ecCCCChHHHHHHHHHHHH
Confidence 9999999999999877543
No 183
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.90 E-value=4.2e-22 Score=155.88 Aligned_cols=154 Identities=16% Similarity=0.208 Sum_probs=108.4
Q ss_pred EEEEEcCCCCChHHHHHhhhcCC-------cc-cccC------ccceeEE----EEEE-----CCeEEEEEEcCCChhhH
Q 030233 19 KLLMVGLDASGKTTILYKMKLGE-------IV-TTTP------TIGFNVE----AVEY-----KNKSFCVWDVGGQNKIR 75 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~~~-------~~-~~~~------~~~~~~~----~~~~-----~~~~~~i~d~~g~~~~~ 75 (181)
+++++|+.++|||||+++++... +. .+.+ ..|++.. .+.+ ....+.+|||||+.+|.
T Consensus 5 Ni~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF~ 84 (595)
T TIGR01393 5 NFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFS 84 (595)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHHH
Confidence 68999999999999999998642 11 1111 1233322 2333 12789999999999999
Q ss_pred HHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEE
Q 030233 76 ALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSI 155 (181)
Q Consensus 76 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (181)
..+..++..+|++++|+|+++..+.+....|.... . .++|+++|+||+|+.+.. .+.....+... .+.....+
T Consensus 85 ~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~-~----~~ipiIiViNKiDl~~~~-~~~~~~el~~~-lg~~~~~v 157 (595)
T TIGR01393 85 YEVSRSLAACEGALLLVDAAQGIEAQTLANVYLAL-E----NDLEIIPVINKIDLPSAD-PERVKKEIEEV-IGLDASEA 157 (595)
T ss_pred HHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHH-H----cCCCEEEEEECcCCCccC-HHHHHHHHHHH-hCCCcceE
Confidence 99999999999999999999876666655554332 2 368999999999986532 22222211110 11112358
Q ss_pred EEeeccCCCCHHHHHHHHHhhhhc
Q 030233 156 QSCSAISGQGLYEGLDWLSNNISV 179 (181)
Q Consensus 156 ~~~Sa~~~~~i~~l~~~i~~~~~~ 179 (181)
+++||++|.|++++|++|.+.+..
T Consensus 158 i~vSAktG~GI~~Lle~I~~~lp~ 181 (595)
T TIGR01393 158 ILASAKTGIGIEEILEAIVKRVPP 181 (595)
T ss_pred EEeeccCCCCHHHHHHHHHHhCCC
Confidence 999999999999999999987754
No 184
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.90 E-value=2.1e-22 Score=153.86 Aligned_cols=147 Identities=24% Similarity=0.284 Sum_probs=103.4
Q ss_pred cEEEEEcCCCCChHHHHHhhhcCCcccccCccc----eeEEEEEECCeEEEEEEcCCChh--------hHHHHHhhccCC
Q 030233 18 IKLLMVGLDASGKTTILYKMKLGEIVTTTPTIG----FNVEAVEYKNKSFCVWDVGGQNK--------IRALWRHYFRDT 85 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~i~d~~g~~~--------~~~~~~~~~~~~ 85 (181)
++|+++|.+|+|||||+|++.+.........++ .....+.+.+..+.+|||||.+. +......++..+
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~a 81 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELAIEEA 81 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHhC
Confidence 579999999999999999999877433333333 33445666789999999999876 344456678899
Q ss_pred CEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCCC
Q 030233 86 LGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQG 165 (181)
Q Consensus 86 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (181)
|++++|+|+.+..+.. ..++...+.. .+.|+++|+||+|+.+. .+...+.... + .-.++++||.+|.|
T Consensus 82 d~il~vvd~~~~~~~~--~~~~~~~l~~---~~~piilv~NK~D~~~~--~~~~~~~~~l---g--~~~~~~iSa~~g~g 149 (435)
T PRK00093 82 DVILFVVDGRAGLTPA--DEEIAKILRK---SNKPVILVVNKVDGPDE--EADAYEFYSL---G--LGEPYPISAEHGRG 149 (435)
T ss_pred CEEEEEEECCCCCCHH--HHHHHHHHHH---cCCcEEEEEECccCccc--hhhHHHHHhc---C--CCCCEEEEeeCCCC
Confidence 9999999998653322 2233333333 37899999999997541 1222222211 1 11379999999999
Q ss_pred HHHHHHHHHhh
Q 030233 166 LYEGLDWLSNN 176 (181)
Q Consensus 166 i~~l~~~i~~~ 176 (181)
++++++.+.+.
T Consensus 150 v~~l~~~I~~~ 160 (435)
T PRK00093 150 IGDLLDAILEE 160 (435)
T ss_pred HHHHHHHHHhh
Confidence 99999999873
No 185
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.90 E-value=9.6e-22 Score=147.66 Aligned_cols=154 Identities=25% Similarity=0.260 Sum_probs=105.7
Q ss_pred EEEEEcCCCCChHHHHHhhhcCCcc--cc-cCccceeEEEEEEC-CeEEEEEEcCCChh----hHHHHH---hhccCCCE
Q 030233 19 KLLMVGLDASGKTTILYKMKLGEIV--TT-TPTIGFNVEAVEYK-NKSFCVWDVGGQNK----IRALWR---HYFRDTLG 87 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~~~~~--~~-~~~~~~~~~~~~~~-~~~~~i~d~~g~~~----~~~~~~---~~~~~~d~ 87 (181)
.|+++|.|++|||||+|++++.... .+ ..|...+...+.+. +..+.+||+||... ...+.. ..++.+++
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhier~~l 239 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIERTRV 239 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHHhhCCE
Confidence 7999999999999999999986522 11 22333344445555 68899999999532 222323 33456999
Q ss_pred EEEEEECCCc---ccHHHHHHHHHHHHcCC-CCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCC
Q 030233 88 LTFVVDSSDR---ERISEARNELHQILSDN-ELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISG 163 (181)
Q Consensus 88 ii~v~d~~~~---~s~~~~~~~~~~~~~~~-~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (181)
+++|+|+++. ++++....|...+.... ...+.|+++|+||+|+... .+.+....... . .+++++||+++
T Consensus 240 lI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~--~e~l~~l~~~l--~---~~i~~iSA~tg 312 (424)
T PRK12297 240 IVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEA--EENLEEFKEKL--G---PKVFPISALTG 312 (424)
T ss_pred EEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCC--HHHHHHHHHHh--C---CcEEEEeCCCC
Confidence 9999999864 56666666665554321 2247899999999998432 22222211111 1 46999999999
Q ss_pred CCHHHHHHHHHhhhhc
Q 030233 164 QGLYEGLDWLSNNISV 179 (181)
Q Consensus 164 ~~i~~l~~~i~~~~~~ 179 (181)
+|++++++++.+.+.+
T Consensus 313 eGI~eL~~~L~~~l~~ 328 (424)
T PRK12297 313 QGLDELLYAVAELLEE 328 (424)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999887654
No 186
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.89 E-value=3.3e-23 Score=131.56 Aligned_cols=109 Identities=25% Similarity=0.408 Sum_probs=79.6
Q ss_pred EEEEEcCCCCChHHHHHhhhcCCcc---cccCccc--e--eEEEEEECCeEEEEEEcCCChhhHHHHHhhccCCCEEEEE
Q 030233 19 KLLMVGLDASGKTTILYKMKLGEIV---TTTPTIG--F--NVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFV 91 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~~~~~---~~~~~~~--~--~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v 91 (181)
||+|+|++|+|||||++++++.... ...++.+ + ...........+.+||++|++.+...+..++..+|++++|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 7899999999999999999998865 1122222 2 2222222445689999999998887766778899999999
Q ss_pred EECCCcccHHHHHHH---HHHHHcCCCCCCCeEEEEEeCCC
Q 030233 92 VDSSDRERISEARNE---LHQILSDNELSNAALLVFANKQD 129 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~---~~~~~~~~~~~~~piilv~nK~D 129 (181)
||+++++++..+..+ +..+... ..++|+++|+||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~~--~~~~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRKR--DKNIPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHHH--SSCSEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHcc--CCCCCEEEEEeccC
Confidence 999999999987554 4444332 24699999999998
No 187
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.89 E-value=8e-22 Score=130.78 Aligned_cols=151 Identities=22% Similarity=0.212 Sum_probs=105.1
Q ss_pred EEcCCCCChHHHHHhhhcCCcccccC----ccceeEEEEEEC-CeEEEEEEcCCChhhH-------HHHHhhccCCCEEE
Q 030233 22 MVGLDASGKTTILYKMKLGEIVTTTP----TIGFNVEAVEYK-NKSFCVWDVGGQNKIR-------ALWRHYFRDTLGLT 89 (181)
Q Consensus 22 ~~G~~~~GKssl~~~~~~~~~~~~~~----~~~~~~~~~~~~-~~~~~i~d~~g~~~~~-------~~~~~~~~~~d~ii 89 (181)
++|++|+|||||++++++........ +........... ...+.+||+||..... ......+..+|+++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il 80 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLIL 80 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEE
Confidence 58999999999999999876442222 222222223333 6799999999965443 34455778899999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCCCHHHH
Q 030233 90 FVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEG 169 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 169 (181)
+|+|+.+........ +...... .+.|+++|+||+|+.......................+++++||.+++|++++
T Consensus 81 ~v~~~~~~~~~~~~~-~~~~~~~----~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l 155 (163)
T cd00880 81 FVVDADLRADEEEEK-LLELLRE----RGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDEL 155 (163)
T ss_pred EEEeCCCCCCHHHHH-HHHHHHh----cCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHH
Confidence 999999877666654 2333222 47899999999999875444443221122222445678999999999999999
Q ss_pred HHHHHhhh
Q 030233 170 LDWLSNNI 177 (181)
Q Consensus 170 ~~~i~~~~ 177 (181)
++++.+.+
T Consensus 156 ~~~l~~~~ 163 (163)
T cd00880 156 REALIEAL 163 (163)
T ss_pred HHHHHhhC
Confidence 99998753
No 188
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.89 E-value=1.1e-21 Score=156.36 Aligned_cols=156 Identities=19% Similarity=0.181 Sum_probs=110.6
Q ss_pred CCCccEEEEEcCCCCChHHHHHhhhcCCcccc---cCccceeEEEEEECCeEEEEEEcCCChhhHHHHHhhccCCCEEEE
Q 030233 14 PQCRIKLLMVGLDASGKTTILYKMKLGEIVTT---TPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTF 90 (181)
Q Consensus 14 ~~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~ 90 (181)
..+...|+++|+.++|||||++++.+..+... ..|.......+.+.+..+.+|||||++.|..++...+..+|++|+
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~~m~~rga~~aDiaIL 366 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNGGKITFLDTPGHEAFTAMRARGAQVTDIVVL 366 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECCEEEEEEECCCCccchhHHHhhhhhCCEEEE
Confidence 45778999999999999999999987664321 123333334566678899999999999999999988999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccc--cC--CccEEEEEeeccCCCCH
Q 030233 91 VVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYS--LG--QRRWSIQSCSAISGQGL 166 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~Sa~~~~~i 166 (181)
|+|+++... ......+... .. .++|+|+++||+|+.+. +.+.+...+.... .. ...++++++||++|+|+
T Consensus 367 VVdAddGv~-~qT~e~i~~a-~~---~~vPiIVviNKiDl~~a-~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~GI 440 (787)
T PRK05306 367 VVAADDGVM-PQTIEAINHA-KA---AGVPIIVAINKIDKPGA-NPDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGEGI 440 (787)
T ss_pred EEECCCCCC-HhHHHHHHHH-Hh---cCCcEEEEEECcccccc-CHHHHHHHHHHhcccHHHhCCCceEEEEeCCCCCCc
Confidence 999986321 1111222222 21 47899999999999653 2333333221110 01 12468999999999999
Q ss_pred HHHHHHHHh
Q 030233 167 YEGLDWLSN 175 (181)
Q Consensus 167 ~~l~~~i~~ 175 (181)
++++++|..
T Consensus 441 ~eLle~I~~ 449 (787)
T PRK05306 441 DELLEAILL 449 (787)
T ss_pred hHHHHhhhh
Confidence 999999874
No 189
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.89 E-value=8.6e-22 Score=154.02 Aligned_cols=155 Identities=21% Similarity=0.131 Sum_probs=108.3
Q ss_pred cEEEEEcCCCCChHHHHHhhhcCC---cc-c--ccCccceeEEEEEECCeEEEEEEcCCChhhHHHHHhhccCCCEEEEE
Q 030233 18 IKLLMVGLDASGKTTILYKMKLGE---IV-T--TTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFV 91 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~~~---~~-~--~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v 91 (181)
+.|+++|++++|||||++++.+.. ++ + ...|.......+...+..+.+||+||++.|.......+..+|++++|
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe~f~~~~~~g~~~aD~aILV 80 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHEKFISNAIAGGGGIDAALLV 80 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHHHHHHHHHhhhccCCEEEEE
Confidence 468999999999999999999743 21 1 12344445555667778999999999999998888889999999999
Q ss_pred EECCCcccHHHHHHHHHHHHcCCCCCCCe-EEEEEeCCCCCCCCCHHH----HHhhhCccccCCccEEEEEeeccCCCCH
Q 030233 92 VDSSDRERISEARNELHQILSDNELSNAA-LLVFANKQDLPNVMPTAE----VADKLELYSLGQRRWSIQSCSAISGQGL 166 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~D~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 166 (181)
+|+++.. .....+.+.. +.. .++| +++|+||+|+.+....+. +........ ...+.+++++||++|+|+
T Consensus 81 VDa~~G~-~~qT~ehl~i-l~~---lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~-~~~~~~ii~vSA~tG~GI 154 (581)
T TIGR00475 81 VDADEGV-MTQTGEHLAV-LDL---LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYI-FLKNAKIFKTSAKTGQGI 154 (581)
T ss_pred EECCCCC-cHHHHHHHHH-HHH---cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhC-CCCCCcEEEEeCCCCCCc
Confidence 9998731 1111222222 222 2566 999999999976332222 222211110 012568999999999999
Q ss_pred HHHHHHHHhhhh
Q 030233 167 YEGLDWLSNNIS 178 (181)
Q Consensus 167 ~~l~~~i~~~~~ 178 (181)
+++++.+.+.+.
T Consensus 155 ~eL~~~L~~l~~ 166 (581)
T TIGR00475 155 GELKKELKNLLE 166 (581)
T ss_pred hhHHHHHHHHHH
Confidence 999998876654
No 190
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.88 E-value=2e-21 Score=145.13 Aligned_cols=158 Identities=20% Similarity=0.178 Sum_probs=106.7
Q ss_pred EEEEEcCCCCChHHHHHhhhcCCccccc----CccceeEEEEEECC-eEEEEEEcCCChh-------hHHHHHhhccCCC
Q 030233 19 KLLMVGLDASGKTTILYKMKLGEIVTTT----PTIGFNVEAVEYKN-KSFCVWDVGGQNK-------IRALWRHYFRDTL 86 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~~~~~~~~----~~~~~~~~~~~~~~-~~~~i~d~~g~~~-------~~~~~~~~~~~~d 86 (181)
.|+++|.|++|||||+|++.+... ... .|.......+...+ ..+.++||||... ........++.++
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~-~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~rad 239 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKP-KVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLERCR 239 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcc-cccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHhCC
Confidence 799999999999999999997653 222 22333344455554 4699999999543 1122334577899
Q ss_pred EEEEEEECC---CcccHHHHHHHHHHHHcC-CCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccC
Q 030233 87 GLTFVVDSS---DRERISEARNELHQILSD-NELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAIS 162 (181)
Q Consensus 87 ~ii~v~d~~---~~~s~~~~~~~~~~~~~~-~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (181)
++++|+|++ +.+.+.....+...+... ....+.|+++|+||+|+.......+....+... .....+++.+||++
T Consensus 240 vlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~--~~~~~~Vi~ISA~t 317 (390)
T PRK12298 240 VLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAIVEA--LGWEGPVYLISAAS 317 (390)
T ss_pred EEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHHHHHHHHHHHH--hCCCCCEEEEECCC
Confidence 999999998 445666666666665442 122468999999999987533322222221111 01112589999999
Q ss_pred CCCHHHHHHHHHhhhhc
Q 030233 163 GQGLYEGLDWLSNNISV 179 (181)
Q Consensus 163 ~~~i~~l~~~i~~~~~~ 179 (181)
++|+++++++|.+.+.+
T Consensus 318 g~GIdeLl~~I~~~L~~ 334 (390)
T PRK12298 318 GLGVKELCWDLMTFIEE 334 (390)
T ss_pred CcCHHHHHHHHHHHhhh
Confidence 99999999999988754
No 191
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.88 E-value=1.8e-22 Score=128.05 Aligned_cols=161 Identities=20% Similarity=0.282 Sum_probs=126.0
Q ss_pred CccEEEEEcCCCCChHHHHHhhhcCCc-ccccCccceeEEE--EEE--CCeEEEEEEcCCChhhHHHHHhhccCCCEEEE
Q 030233 16 CRIKLLMVGLDASGKTTILYKMKLGEI-VTTTPTIGFNVEA--VEY--KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTF 90 (181)
Q Consensus 16 ~~~~i~~~G~~~~GKssl~~~~~~~~~-~~~~~~~~~~~~~--~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~ 90 (181)
-.++|.++|++..|||||+-.++++.. ..+..+.|++... +.. .++.+.+||.+|++++..+.+....++-++++
T Consensus 19 Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlF 98 (205)
T KOG1673|consen 19 VSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAILF 98 (205)
T ss_pred eEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEEE
Confidence 368999999999999999999999886 4556777766543 333 67889999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH---HHHHhhhCccccCCccEEEEEeeccCCCCHH
Q 030233 91 VVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPT---AEVADKLELYSLGQRRWSIQSCSAISGQGLY 167 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (181)
+||++.++++..+.+|+......+ ....-|+||+|.|..=..+. +++... +...++.-+.+.++||+.++.|++
T Consensus 99 mFDLt~r~TLnSi~~WY~QAr~~N--ktAiPilvGTKyD~fi~lp~e~Q~~I~~q-ar~YAk~mnAsL~F~Sts~sINv~ 175 (205)
T KOG1673|consen 99 MFDLTRRSTLNSIKEWYRQARGLN--KTAIPILVGTKYDLFIDLPPELQETISRQ-ARKYAKVMNASLFFCSTSHSINVQ 175 (205)
T ss_pred EEecCchHHHHHHHHHHHHHhccC--CccceEEeccchHhhhcCCHHHHHHHHHH-HHHHHHHhCCcEEEeeccccccHH
Confidence 999999999999999999876553 23445789999997432222 222221 222334556789999999999999
Q ss_pred HHHHHHHhhhhc
Q 030233 168 EGLDWLSNNISV 179 (181)
Q Consensus 168 ~l~~~i~~~~~~ 179 (181)
++|+-+..++.+
T Consensus 176 KIFK~vlAklFn 187 (205)
T KOG1673|consen 176 KIFKIVLAKLFN 187 (205)
T ss_pred HHHHHHHHHHhC
Confidence 999988776643
No 192
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.88 E-value=5.8e-21 Score=151.16 Aligned_cols=157 Identities=19% Similarity=0.198 Sum_probs=109.5
Q ss_pred CCCccEEEEEcCCCCChHHHHHhhhcCCcccc---cCccceeEEE--EEE--CCeEEEEEEcCCChhhHHHHHhhccCCC
Q 030233 14 PQCRIKLLMVGLDASGKTTILYKMKLGEIVTT---TPTIGFNVEA--VEY--KNKSFCVWDVGGQNKIRALWRHYFRDTL 86 (181)
Q Consensus 14 ~~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~---~~~~~~~~~~--~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~d 86 (181)
..+...|+++|++++|||||++++.+..+... ..|....... +.. .+..+.+|||||++.|..++...+..+|
T Consensus 241 ~~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aD 320 (742)
T CHL00189 241 INRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTD 320 (742)
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCC
Confidence 35678999999999999999999987764331 1222222222 222 3589999999999999999999999999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccc--cC--CccEEEEEeeccC
Q 030233 87 GLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYS--LG--QRRWSIQSCSAIS 162 (181)
Q Consensus 87 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~Sa~~ 162 (181)
++++|+|+++...-+.. +.+..+ .. .++|+|+++||+|+.+. ..+.+...+.... .. ...++++++||++
T Consensus 321 iaILVVDA~dGv~~QT~-E~I~~~-k~---~~iPiIVViNKiDl~~~-~~e~v~~eL~~~~ll~e~~g~~vpvv~VSAkt 394 (742)
T CHL00189 321 IAILIIAADDGVKPQTI-EAINYI-QA---ANVPIIVAINKIDKANA-NTERIKQQLAKYNLIPEKWGGDTPMIPISASQ 394 (742)
T ss_pred EEEEEEECcCCCChhhH-HHHHHH-Hh---cCceEEEEEECCCcccc-CHHHHHHHHHHhccchHhhCCCceEEEEECCC
Confidence 99999999764222221 222222 22 47899999999998753 2333333322110 01 1246899999999
Q ss_pred CCCHHHHHHHHHhh
Q 030233 163 GQGLYEGLDWLSNN 176 (181)
Q Consensus 163 ~~~i~~l~~~i~~~ 176 (181)
|+|++++++++...
T Consensus 395 G~GIdeLle~I~~l 408 (742)
T CHL00189 395 GTNIDKLLETILLL 408 (742)
T ss_pred CCCHHHHHHhhhhh
Confidence 99999999998764
No 193
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.87 E-value=9.4e-21 Score=148.51 Aligned_cols=155 Identities=20% Similarity=0.206 Sum_probs=107.4
Q ss_pred cEEEEEcCCCCChHHHHHhhhcCC--ccc----------------ccCccceeEEEEEE-----CCeEEEEEEcCCChhh
Q 030233 18 IKLLMVGLDASGKTTILYKMKLGE--IVT----------------TTPTIGFNVEAVEY-----KNKSFCVWDVGGQNKI 74 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~~~--~~~----------------~~~~~~~~~~~~~~-----~~~~~~i~d~~g~~~~ 74 (181)
-+++++|+.++|||||+.+++... +.. ...|.......+.+ ....+.+|||||+.++
T Consensus 8 RNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~dF 87 (600)
T PRK05433 8 RNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVDF 87 (600)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHHH
Confidence 379999999999999999997632 110 11222222223333 2578999999999999
Q ss_pred HHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEE
Q 030233 75 RALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWS 154 (181)
Q Consensus 75 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (181)
...+..++..+|++++|+|+++....+....|... .. .++|+++|+||+|+.+... +.....+... .+.....
T Consensus 88 ~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~-~~----~~lpiIvViNKiDl~~a~~-~~v~~ei~~~-lg~~~~~ 160 (600)
T PRK05433 88 SYEVSRSLAACEGALLVVDASQGVEAQTLANVYLA-LE----NDLEIIPVLNKIDLPAADP-ERVKQEIEDV-IGIDASD 160 (600)
T ss_pred HHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHH-HH----CCCCEEEEEECCCCCcccH-HHHHHHHHHH-hCCCcce
Confidence 99999999999999999999876555444443322 22 3689999999999865322 2222211110 1112235
Q ss_pred EEEeeccCCCCHHHHHHHHHhhhhc
Q 030233 155 IQSCSAISGQGLYEGLDWLSNNISV 179 (181)
Q Consensus 155 ~~~~Sa~~~~~i~~l~~~i~~~~~~ 179 (181)
++++||++|.|+++++++|.+.+..
T Consensus 161 vi~iSAktG~GI~~Ll~~I~~~lp~ 185 (600)
T PRK05433 161 AVLVSAKTGIGIEEVLEAIVERIPP 185 (600)
T ss_pred EEEEecCCCCCHHHHHHHHHHhCcc
Confidence 8999999999999999999987754
No 194
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.87 E-value=2.8e-21 Score=147.04 Aligned_cols=153 Identities=18% Similarity=0.173 Sum_probs=102.1
Q ss_pred CCCccEEEEEcCCCCChHHHHHhhhcCC--cc--------------------------------cccCccceeEEEEEEC
Q 030233 14 PQCRIKLLMVGLDASGKTTILYKMKLGE--IV--------------------------------TTTPTIGFNVEAVEYK 59 (181)
Q Consensus 14 ~~~~~~i~~~G~~~~GKssl~~~~~~~~--~~--------------------------------~~~~~~~~~~~~~~~~ 59 (181)
.+..++|+++|++++|||||+++++... .. ....|.......+...
T Consensus 3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~ 82 (425)
T PRK12317 3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD 82 (425)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC
Confidence 4567899999999999999999998432 10 1223444445556668
Q ss_pred CeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH---
Q 030233 60 NKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPT--- 136 (181)
Q Consensus 60 ~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~--- 136 (181)
+..+.+|||||+++|.......+..+|++++|+|++++.++.....+...+.... ...|+++++||+|+.+....
T Consensus 83 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~--~~~~iivviNK~Dl~~~~~~~~~ 160 (425)
T PRK12317 83 KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL--GINQLIVAINKMDAVNYDEKRYE 160 (425)
T ss_pred CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc--CCCeEEEEEEccccccccHHHHH
Confidence 8999999999999887766666788999999999986323322222222222221 23579999999998752211
Q ss_pred ---HHHHhhhCccccCCccEEEEEeeccCCCCHHH
Q 030233 137 ---AEVADKLELYSLGQRRWSIQSCSAISGQGLYE 168 (181)
Q Consensus 137 ---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (181)
+++...+.........++++++||++|+|+++
T Consensus 161 ~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~ 195 (425)
T PRK12317 161 EVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVK 195 (425)
T ss_pred HHHHHHHHHHHhhCCCcCcceEEEeecccCCCccc
Confidence 12222222221122346899999999999987
No 195
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.87 E-value=2.2e-20 Score=131.45 Aligned_cols=155 Identities=18% Similarity=0.192 Sum_probs=110.0
Q ss_pred EEEEEcCCCCChHHHHHhhhcCC--cc------------c-------ccCccceeEEEEEECCeEEEEEEcCCChhhHHH
Q 030233 19 KLLMVGLDASGKTTILYKMKLGE--IV------------T-------TTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRAL 77 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~~~--~~------------~-------~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~ 77 (181)
+|+++|++|+|||||+++++... .. + ...+.......+.+.+.++.+|||||+.++...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 58999999999999999997632 00 0 111233344556678999999999999999999
Q ss_pred HHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH---HHHHhhhCc---------
Q 030233 78 WRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPT---AEVADKLEL--------- 145 (181)
Q Consensus 78 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~---~~~~~~~~~--------- 145 (181)
+..+++.+|++++|+|+.+.... ....++..+.. .++|+++++||+|+.+.... +++...+..
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~----~~~P~iivvNK~D~~~a~~~~~~~~i~~~~~~~~~~~~~p~ 155 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQA-QTRILWRLLRK----LNIPTIIFVNKIDRAGADLEKVYQEIKEKLSSDIVPMQKVG 155 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHH----cCCCEEEEEECccccCCCHHHHHHHHHHHHCCCeEEEECCc
Confidence 99999999999999999865432 23344444332 36899999999998753211 111111110
Q ss_pred -----------------------------------------------cccCCccEEEEEeeccCCCCHHHHHHHHHhhhh
Q 030233 146 -----------------------------------------------YSLGQRRWSIQSCSAISGQGLYEGLDWLSNNIS 178 (181)
Q Consensus 146 -----------------------------------------------~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~ 178 (181)
......-+|++..||.++.|++.|++.+.+.+.
T Consensus 156 ~~~~~~~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~~~~Pv~~gsa~~~~Gv~~ll~~~~~~~p 235 (237)
T cd04168 156 LAPNICETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRKVFPVYHGSALKGIGIEELLEGITKLFP 235 (237)
T ss_pred EeeeeeeeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCeEEEEEccccCCcCHHHHHHHHHHhcC
Confidence 000225678999999999999999999998775
No 196
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.87 E-value=3.4e-21 Score=146.56 Aligned_cols=153 Identities=18% Similarity=0.103 Sum_probs=101.7
Q ss_pred CCCccEEEEEcCCCCChHHHHHhhhcCC--cc--------------------------------cccCccceeEEEEEEC
Q 030233 14 PQCRIKLLMVGLDASGKTTILYKMKLGE--IV--------------------------------TTTPTIGFNVEAVEYK 59 (181)
Q Consensus 14 ~~~~~~i~~~G~~~~GKssl~~~~~~~~--~~--------------------------------~~~~~~~~~~~~~~~~ 59 (181)
....++|+++|+.++|||||+.+++... .. ....|.......+...
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~ 83 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD 83 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC
Confidence 3457899999999999999999998521 11 0122344444556667
Q ss_pred CeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCCcccHHHHHH-HHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--H
Q 030233 60 NKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARN-ELHQILSDNELSNAALLVFANKQDLPNVMP--T 136 (181)
Q Consensus 60 ~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~ 136 (181)
+..+.+|||||+++|.......+..+|++++|+|+++.++...... +...+.... ...|+++++||+|+.+... .
T Consensus 84 ~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~--~~~~iIVviNK~Dl~~~~~~~~ 161 (426)
T TIGR00483 84 KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTL--GINQLIVAINKMDSVNYDEEEF 161 (426)
T ss_pred CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHc--CCCeEEEEEEChhccCccHHHH
Confidence 8899999999999988777777889999999999988743311111 111122221 2468999999999964222 1
Q ss_pred ----HHHHhhhCccccCCccEEEEEeeccCCCCHHH
Q 030233 137 ----AEVADKLELYSLGQRRWSIQSCSAISGQGLYE 168 (181)
Q Consensus 137 ----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (181)
+++.............++++++||++|+|+++
T Consensus 162 ~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~ 197 (426)
T TIGR00483 162 EAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIK 197 (426)
T ss_pred HHHHHHHHHHHHHcCCCcccceEEEeeccccccccc
Confidence 12222222111122356899999999999986
No 197
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.87 E-value=1.6e-20 Score=125.43 Aligned_cols=163 Identities=15% Similarity=0.203 Sum_probs=113.8
Q ss_pred hhCCCCccEEEEEcCCCCChHHHHHhhhcCC-cccccCccceeEEEEEE-CCeEEEEEEcCCC----------hhhHHHH
Q 030233 11 RFFPQCRIKLLMVGLDASGKTTILYKMKLGE-IVTTTPTIGFNVEAVEY-KNKSFCVWDVGGQ----------NKIRALW 78 (181)
Q Consensus 11 ~~~~~~~~~i~~~G~~~~GKssl~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~i~d~~g~----------~~~~~~~ 78 (181)
.+.+....-|+++|.+++|||||+|+++++. ....+.|+|.+...-.+ -+..+.+.|.||. +.+....
T Consensus 18 ~~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~~~lVDlPGYGyAkv~k~~~e~w~~~i 97 (200)
T COG0218 18 QYPEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDELRLVDLPGYGYAKVPKEVKEKWKKLI 97 (200)
T ss_pred hCCCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCcEEEEeCCCcccccCCHHHHHHHHHHH
Confidence 3445566789999999999999999999976 68888889877665333 2233899999993 3444555
Q ss_pred Hhhcc---CCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHH----HHHhhhCccccCCc
Q 030233 79 RHYFR---DTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTA----EVADKLELYSLGQR 151 (181)
Q Consensus 79 ~~~~~---~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~----~~~~~~~~~~~~~~ 151 (181)
..+++ +..++++++|+..+ ....+..+...+.. .++|+++++||+|........ .+++.+.......
T Consensus 98 ~~YL~~R~~L~~vvlliD~r~~--~~~~D~em~~~l~~---~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~~~- 171 (200)
T COG0218 98 EEYLEKRANLKGVVLLIDARHP--PKDLDREMIEFLLE---LGIPVIVVLTKADKLKKSERNKQLNKVAEELKKPPPDD- 171 (200)
T ss_pred HHHHhhchhheEEEEEEECCCC--CcHHHHHHHHHHHH---cCCCeEEEEEccccCChhHHHHHHHHHHHHhcCCCCcc-
Confidence 55654 35788899999644 44444444444444 589999999999998754442 3333333221111
Q ss_pred cEEEEEeeccCCCCHHHHHHHHHhhhhcc
Q 030233 152 RWSIQSCSAISGQGLYEGLDWLSNNISVK 180 (181)
Q Consensus 152 ~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~ 180 (181)
. -++..|+.++.|++++.+.|.+.+...
T Consensus 172 ~-~~~~~ss~~k~Gi~~l~~~i~~~~~~~ 199 (200)
T COG0218 172 Q-WVVLFSSLKKKGIDELKAKILEWLKEA 199 (200)
T ss_pred c-eEEEEecccccCHHHHHHHHHHHhhcc
Confidence 1 188889999999999999999887653
No 198
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.87 E-value=3.4e-20 Score=121.29 Aligned_cols=158 Identities=23% Similarity=0.365 Sum_probs=126.6
Q ss_pred hCCCCccEEEEEcCCCCChHHHHHhhhcCCcccc-------------cCccceeEEEEEE-CCeEEEEEEcCCChhhHHH
Q 030233 12 FFPQCRIKLLMVGLDASGKTTILYKMKLGEIVTT-------------TPTIGFNVEAVEY-KNKSFCVWDVGGQNKIRAL 77 (181)
Q Consensus 12 ~~~~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~-------------~~~~~~~~~~~~~-~~~~~~i~d~~g~~~~~~~ 77 (181)
...+...+|++.|+.++||||++..++....... ..|...++....+ .+..+.+++||||+++.-.
T Consensus 5 ~~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~fm 84 (187)
T COG2229 5 ANKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERFKFM 84 (187)
T ss_pred cccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHHHHHH
Confidence 3456788999999999999999999987663211 1233444445555 4489999999999999999
Q ss_pred HHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEE
Q 030233 78 WRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQS 157 (181)
Q Consensus 78 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (181)
|....+++.+.|+++|.+.+..+ ....+..++.+.. .+|++++.||.|+....+.+++.+.+.... ...++++
T Consensus 85 ~~~l~~ga~gaivlVDss~~~~~--~a~~ii~f~~~~~--~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~---~~~~vi~ 157 (187)
T COG2229 85 WEILSRGAVGAIVLVDSSRPITF--HAEEIIDFLTSRN--PIPVVVAINKQDLFDALPPEKIREALKLEL---LSVPVIE 157 (187)
T ss_pred HHHHhCCcceEEEEEecCCCcch--HHHHHHHHHhhcc--CCCEEEEeeccccCCCCCHHHHHHHHHhcc---CCCceee
Confidence 99999999999999999988877 3334444445422 399999999999999999999999887653 4668999
Q ss_pred eeccCCCCHHHHHHHHHhh
Q 030233 158 CSAISGQGLYEGLDWLSNN 176 (181)
Q Consensus 158 ~Sa~~~~~i~~l~~~i~~~ 176 (181)
.+|.++++..+.++.+...
T Consensus 158 ~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 158 IDATEGEGARDQLDVLLLK 176 (187)
T ss_pred eecccchhHHHHHHHHHhh
Confidence 9999999999999988765
No 199
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.86 E-value=1.1e-20 Score=130.99 Aligned_cols=146 Identities=19% Similarity=0.177 Sum_probs=94.1
Q ss_pred EEEEEcCCCCChHHHHHhhhcCC--ccc--------------------------------ccCccceeEEEEEECCeEEE
Q 030233 19 KLLMVGLDASGKTTILYKMKLGE--IVT--------------------------------TTPTIGFNVEAVEYKNKSFC 64 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~~~--~~~--------------------------------~~~~~~~~~~~~~~~~~~~~ 64 (181)
+|+++|++++|||||+++++... ... ...|.......+.+.+..+.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 58999999999999999997643 110 11233333344556788999
Q ss_pred EEEcCCChhhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HHHHHhh
Q 030233 65 VWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMP--TAEVADK 142 (181)
Q Consensus 65 i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~~~~~~ 142 (181)
+|||||++++.......+..+|++++|+|+++...- .... ...++... ...++|+|+||+|+.+... ...+...
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~-~~~~-~~~~~~~~--~~~~iIvviNK~D~~~~~~~~~~~i~~~ 156 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVLE-QTRR-HSYILSLL--GIRHVVVAVNKMDLVDYSEEVFEEIVAD 156 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccH-hHHH-HHHHHHHc--CCCcEEEEEEchhcccCCHHHHHHHHHH
Confidence 999999998877777788899999999999864211 1111 22222221 2346788999999865321 1112222
Q ss_pred hCc--cccCCccEEEEEeeccCCCCHHH
Q 030233 143 LEL--YSLGQRRWSIQSCSAISGQGLYE 168 (181)
Q Consensus 143 ~~~--~~~~~~~~~~~~~Sa~~~~~i~~ 168 (181)
+.. ...+....+++++||++|.|+++
T Consensus 157 ~~~~~~~~~~~~~~ii~iSA~~g~ni~~ 184 (208)
T cd04166 157 YLAFAAKLGIEDITFIPISALDGDNVVS 184 (208)
T ss_pred HHHHHHHcCCCCceEEEEeCCCCCCCcc
Confidence 110 11122345799999999999975
No 200
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.86 E-value=2.1e-20 Score=146.17 Aligned_cols=156 Identities=20% Similarity=0.230 Sum_probs=113.9
Q ss_pred EEEEEcCCCCChHHHHHhhhcCC--ccc-----------------ccCccceeEEEEEECCeEEEEEEcCCChhhHHHHH
Q 030233 19 KLLMVGLDASGKTTILYKMKLGE--IVT-----------------TTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWR 79 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~~~--~~~-----------------~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~ 79 (181)
+|+++|+.++|||||+++++... +.. ...|+......+.+.+..+.+|||||+.+|...+.
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~ 82 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVE 82 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHH
Confidence 68999999999999999998632 211 12334444455777899999999999999999999
Q ss_pred hhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH---HHHHhhhCcccc--CCccEE
Q 030233 80 HYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPT---AEVADKLELYSL--GQRRWS 154 (181)
Q Consensus 80 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~---~~~~~~~~~~~~--~~~~~~ 154 (181)
..++.+|++++|+|+.+. .......++..+.. .++|+++|+||+|+.+.... +++...+..... ....++
T Consensus 83 ~~l~~aD~alLVVDa~~G-~~~qT~~~l~~a~~----~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~p 157 (594)
T TIGR01394 83 RVLGMVDGVLLLVDASEG-PMPQTRFVLKKALE----LGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDFP 157 (594)
T ss_pred HHHHhCCEEEEEEeCCCC-CcHHHHHHHHHHHH----CCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccCc
Confidence 999999999999999753 34455566666544 36899999999998653222 222222211111 223568
Q ss_pred EEEeeccCCC----------CHHHHHHHHHhhhhc
Q 030233 155 IQSCSAISGQ----------GLYEGLDWLSNNISV 179 (181)
Q Consensus 155 ~~~~Sa~~~~----------~i~~l~~~i~~~~~~ 179 (181)
++.+||++|. |++.+|+.+.+.+..
T Consensus 158 vl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~ 192 (594)
T TIGR01394 158 IVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPA 192 (594)
T ss_pred EEechhhcCcccccCcccccCHHHHHHHHHHhCCC
Confidence 9999999996 899999999988754
No 201
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.86 E-value=1.1e-20 Score=142.81 Aligned_cols=159 Identities=16% Similarity=0.095 Sum_probs=104.3
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhcCCccc------ccCccceeEEEE--------------------EE------CCeE
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKLGEIVT------TTPTIGFNVEAV--------------------EY------KNKS 62 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~~------~~~~~~~~~~~~--------------------~~------~~~~ 62 (181)
+.+++|+++|++++|||||++++.+..... ...|.......+ .. ....
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR 81 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence 567899999999999999999997542211 111111111100 00 1467
Q ss_pred EEEEEcCCChhhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHH----H
Q 030233 63 FCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTA----E 138 (181)
Q Consensus 63 ~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~----~ 138 (181)
+.+||+||+++|...+......+|++++|+|+++........+.+..+ ... ...|+++++||+|+.+..... +
T Consensus 82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l-~~~--gi~~iIVvvNK~Dl~~~~~~~~~~~~ 158 (406)
T TIGR03680 82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMAL-EII--GIKNIVIVQNKIDLVSKEKALENYEE 158 (406)
T ss_pred EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHH-HHc--CCCeEEEEEEccccCCHHHHHHHHHH
Confidence 999999999999988888888999999999998542112222222222 211 235789999999987532221 2
Q ss_pred HHhhhCccccCCccEEEEEeeccCCCCHHHHHHHHHhhhh
Q 030233 139 VADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNIS 178 (181)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~ 178 (181)
+....... ....++++++||++|+|+++++++|...+.
T Consensus 159 i~~~l~~~--~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 159 IKEFVKGT--VAENAPIIPVSALHNANIDALLEAIEKFIP 196 (406)
T ss_pred HHhhhhhc--ccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence 22211111 123568999999999999999999988654
No 202
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.86 E-value=1.1e-20 Score=147.29 Aligned_cols=153 Identities=22% Similarity=0.178 Sum_probs=103.5
Q ss_pred CccEEEEEcCCCCChHHHHHhhhcCCccc-----ccCccceeEEEEEE----------------CCeEEEEEEcCCChhh
Q 030233 16 CRIKLLMVGLDASGKTTILYKMKLGEIVT-----TTPTIGFNVEAVEY----------------KNKSFCVWDVGGQNKI 74 (181)
Q Consensus 16 ~~~~i~~~G~~~~GKssl~~~~~~~~~~~-----~~~~~~~~~~~~~~----------------~~~~~~i~d~~g~~~~ 74 (181)
+..-|+++|++++|||||++++.+..+.. ..++++........ ....+.+|||||++.|
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f 82 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAF 82 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhH
Confidence 45679999999999999999999876432 22333333222211 1124889999999999
Q ss_pred HHHHHhhccCCCEEEEEEECCC---cccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--------------CHH
Q 030233 75 RALWRHYFRDTLGLTFVVDSSD---RERISEARNELHQILSDNELSNAALLVFANKQDLPNVM--------------PTA 137 (181)
Q Consensus 75 ~~~~~~~~~~~d~ii~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--------------~~~ 137 (181)
..++...++.+|++++|+|+++ +.++..+. . +.. .+.|+++++||+|+.+.- ..+
T Consensus 83 ~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~----~-l~~---~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~ 154 (590)
T TIGR00491 83 TNLRKRGGALADLAILIVDINEGFKPQTQEALN----I-LRM---YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEI 154 (590)
T ss_pred HHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHH----H-HHH---cCCCEEEEEECCCccchhhhccCchHHHHHHhhhH
Confidence 9999999999999999999986 33333322 2 222 368999999999986421 011
Q ss_pred HHHh-----------hhCcccc----------CCccEEEEEeeccCCCCHHHHHHHHHhh
Q 030233 138 EVAD-----------KLELYSL----------GQRRWSIQSCSAISGQGLYEGLDWLSNN 176 (181)
Q Consensus 138 ~~~~-----------~~~~~~~----------~~~~~~~~~~Sa~~~~~i~~l~~~i~~~ 176 (181)
.+.. .+....+ -....+++++||++|+|++++.+++...
T Consensus 155 ~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l 214 (590)
T TIGR00491 155 QVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGL 214 (590)
T ss_pred HHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHH
Confidence 1110 0110000 1235789999999999999999988643
No 203
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.86 E-value=8.4e-20 Score=128.36 Aligned_cols=149 Identities=22% Similarity=0.172 Sum_probs=100.8
Q ss_pred EEEEEcCCCCChHHHHHhhhcCCccc---ccCccceeEEEEEECCeEEEEEEcCCChhh-------HHHHHhhccCCCEE
Q 030233 19 KLLMVGLDASGKTTILYKMKLGEIVT---TTPTIGFNVEAVEYKNKSFCVWDVGGQNKI-------RALWRHYFRDTLGL 88 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~-------~~~~~~~~~~~d~i 88 (181)
+++++|.+|+|||||++++.+..... ...|.......+.+.+..+++||+||.... .......++.+|++
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~i 81 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTADLI 81 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECCeEEEEEECCCcccccccchhHHHHHHHhhccCCEE
Confidence 68999999999999999999875321 122333445556678899999999996432 22345678899999
Q ss_pred EEEEECCCcc-cHHHHHHHHH----------------------------------------HHHcCC-------------
Q 030233 89 TFVVDSSDRE-RISEARNELH----------------------------------------QILSDN------------- 114 (181)
Q Consensus 89 i~v~d~~~~~-s~~~~~~~~~----------------------------------------~~~~~~------------- 114 (181)
++|+|+++++ ....+.+.+. .+++..
T Consensus 82 l~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~~~ 161 (233)
T cd01896 82 LMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIREDI 161 (233)
T ss_pred EEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEccCC
Confidence 9999998754 2222222221 111000
Q ss_pred -----------CCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHHHHHHhhh
Q 030233 115 -----------ELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNI 177 (181)
Q Consensus 115 -----------~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~ 177 (181)
....+|+++|+||+|+.+ .++..... .. ..++++||++|.|++++|+.+.+.+
T Consensus 162 ~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~---~~~~~~~~-----~~--~~~~~~SA~~g~gi~~l~~~i~~~L 225 (233)
T cd01896 162 TVDDLIDVIEGNRVYIPCLYVYNKIDLIS---IEELDLLA-----RQ--PNSVVISAEKGLNLDELKERIWDKL 225 (233)
T ss_pred CHHHHHHHHhCCceEeeEEEEEECccCCC---HHHHHHHh-----cC--CCEEEEcCCCCCCHHHHHHHHHHHh
Confidence 012369999999999865 33333211 11 2489999999999999999998865
No 204
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.86 E-value=1.9e-20 Score=118.65 Aligned_cols=162 Identities=23% Similarity=0.309 Sum_probs=122.8
Q ss_pred CccEEEEEcCCCCChHHHHHhhhcCCc---ccccCccceeEEE-EEE---CCeEEEEEEcCCChhh-HHHHHhhccCCCE
Q 030233 16 CRIKLLMVGLDASGKTTILYKMKLGEI---VTTTPTIGFNVEA-VEY---KNKSFCVWDVGGQNKI-RALWRHYFRDTLG 87 (181)
Q Consensus 16 ~~~~i~~~G~~~~GKssl~~~~~~~~~---~~~~~~~~~~~~~-~~~---~~~~~~i~d~~g~~~~-~~~~~~~~~~~d~ 87 (181)
+..+++++|..++|||+++.+++.++- .+.-||+...+.. ++- ....+.++||.|...+ ..+-..++.-+|+
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aDa 87 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFADA 87 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCce
Confidence 468999999999999999999987662 2334555432222 211 3357999999997777 4455667788999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCCCHH
Q 030233 88 LTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLY 167 (181)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (181)
+++||+..+++||+.....-..+-.+.+...+|+++++||+|+.+ ..++....+...++...+..++++|.+...+-
T Consensus 88 fVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~---p~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL~ 164 (198)
T KOG3883|consen 88 FVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAE---PREVDMDVAQIWAKREKVKLWEVTAMDRPSLY 164 (198)
T ss_pred EEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhccc---chhcCHHHHHHHHhhhheeEEEEEeccchhhh
Confidence 999999999999999887777776777778899999999999865 22333333333445566789999999999999
Q ss_pred HHHHHHHhhhhcc
Q 030233 168 EGLDWLSNNISVK 180 (181)
Q Consensus 168 ~l~~~i~~~~~~~ 180 (181)
+.|..++.++.+.
T Consensus 165 epf~~l~~rl~~p 177 (198)
T KOG3883|consen 165 EPFTYLASRLHQP 177 (198)
T ss_pred hHHHHHHHhccCC
Confidence 9999999887543
No 205
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.86 E-value=3.4e-20 Score=137.47 Aligned_cols=151 Identities=18% Similarity=0.208 Sum_probs=111.5
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEE----EEECCeEEEEEEcCCChhhHHH--------HHhhc
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEA----VEYKNKSFCVWDVGGQNKIRAL--------WRHYF 82 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~i~d~~g~~~~~~~--------~~~~~ 82 (181)
...++++++|.||+|||||+|.+++.+..-..+.+|++.+. +.+.++.+.+.||+|-.+-... ....+
T Consensus 215 r~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~i 294 (454)
T COG0486 215 REGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKKAI 294 (454)
T ss_pred hcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHHHH
Confidence 35689999999999999999999999977777777777665 4459999999999995432221 33466
Q ss_pred cCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccC
Q 030233 83 RDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAIS 162 (181)
Q Consensus 83 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (181)
+.+|.+++|+|.+.+.+ .....+... ...+.|+++|.||.|+........+ + . ....+++.+||++
T Consensus 295 ~~ADlvL~v~D~~~~~~--~~d~~~~~~----~~~~~~~i~v~NK~DL~~~~~~~~~-~-~------~~~~~~i~iSa~t 360 (454)
T COG0486 295 EEADLVLFVLDASQPLD--KEDLALIEL----LPKKKPIIVVLNKADLVSKIELESE-K-L------ANGDAIISISAKT 360 (454)
T ss_pred HhCCEEEEEEeCCCCCc--hhhHHHHHh----cccCCCEEEEEechhcccccccchh-h-c------cCCCceEEEEecC
Confidence 78999999999987521 222211111 1257999999999999875553333 1 1 1222689999999
Q ss_pred CCCHHHHHHHHHhhhhc
Q 030233 163 GQGLYEGLDWLSNNISV 179 (181)
Q Consensus 163 ~~~i~~l~~~i~~~~~~ 179 (181)
|+|++.+.+.|.+.+..
T Consensus 361 ~~Gl~~L~~~i~~~~~~ 377 (454)
T COG0486 361 GEGLDALREAIKQLFGK 377 (454)
T ss_pred ccCHHHHHHHHHHHHhh
Confidence 99999999999876543
No 206
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.86 E-value=3e-20 Score=140.36 Aligned_cols=160 Identities=15% Similarity=0.090 Sum_probs=103.1
Q ss_pred CCCccEEEEEcCCCCChHHHHHhhhcCCccc------ccCccceeEEEEEE------------------C--------Ce
Q 030233 14 PQCRIKLLMVGLDASGKTTILYKMKLGEIVT------TTPTIGFNVEAVEY------------------K--------NK 61 (181)
Q Consensus 14 ~~~~~~i~~~G~~~~GKssl~~~~~~~~~~~------~~~~~~~~~~~~~~------------------~--------~~ 61 (181)
.+..++|+++|+.++|||||+.++.+..... ...|+........+ . ..
T Consensus 6 ~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (411)
T PRK04000 6 VQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLR 85 (411)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccccccc
Confidence 4567899999999999999999996532111 11222221110000 0 25
Q ss_pred EEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHH----
Q 030233 62 SFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTA---- 137 (181)
Q Consensus 62 ~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~---- 137 (181)
.+.+|||||+++|..........+|++++|+|+.++.........+..+... ...|+++|+||+|+.+.....
T Consensus 86 ~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~---~i~~iiVVlNK~Dl~~~~~~~~~~~ 162 (411)
T PRK04000 86 RVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDII---GIKNIVIVQNKIDLVSKERALENYE 162 (411)
T ss_pred EEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHc---CCCcEEEEEEeeccccchhHHHHHH
Confidence 7999999999998877777777889999999998642111112222222111 234789999999997643322
Q ss_pred HHHhhhCccccCCccEEEEEeeccCCCCHHHHHHHHHhhhh
Q 030233 138 EVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNIS 178 (181)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~ 178 (181)
++....... ...+.+++++||++|+|++++++.|.+.+.
T Consensus 163 ~i~~~l~~~--~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~ 201 (411)
T PRK04000 163 QIKEFVKGT--VAENAPIIPVSALHKVNIDALIEAIEEEIP 201 (411)
T ss_pred HHHHHhccc--cCCCCeEEEEECCCCcCHHHHHHHHHHhCC
Confidence 222222111 123568999999999999999999998764
No 207
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.86 E-value=4.5e-20 Score=126.23 Aligned_cols=155 Identities=21% Similarity=0.166 Sum_probs=101.5
Q ss_pred ccEEEEEcCCCCChHHHHHhhhcCCc----------c---------cccCccceeEEEEEECCeEEEEEEcCCChhhHHH
Q 030233 17 RIKLLMVGLDASGKTTILYKMKLGEI----------V---------TTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRAL 77 (181)
Q Consensus 17 ~~~i~~~G~~~~GKssl~~~~~~~~~----------~---------~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~ 77 (181)
.++|+++|+.++|||||++++++... . ....|.......+...+..+.++||||+.++...
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~ 81 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN 81 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence 47899999999999999999975310 0 1112222333334456788999999999999888
Q ss_pred HHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCe-EEEEEeCCCCCCCCCH-H----HHHhhhCccccCCc
Q 030233 78 WRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAA-LLVFANKQDLPNVMPT-A----EVADKLELYSLGQR 151 (181)
Q Consensus 78 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~D~~~~~~~-~----~~~~~~~~~~~~~~ 151 (181)
....+..+|++++|+|+...-. ......+..+.. .++| +|+++||+|+...... + ++...+........
T Consensus 82 ~~~~~~~~D~~ilVvda~~g~~-~~~~~~~~~~~~----~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~ 156 (195)
T cd01884 82 MITGAAQMDGAILVVSATDGPM-PQTREHLLLARQ----VGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGD 156 (195)
T ss_pred HHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhccccc
Confidence 8888899999999999975321 222233333322 2455 7899999998642221 1 12222222112234
Q ss_pred cEEEEEeeccCCCCH----------HHHHHHHHhh
Q 030233 152 RWSIQSCSAISGQGL----------YEGLDWLSNN 176 (181)
Q Consensus 152 ~~~~~~~Sa~~~~~i----------~~l~~~i~~~ 176 (181)
+++++++||++|.|+ ..|++.|...
T Consensus 157 ~v~iipiSa~~g~n~~~~~~w~~~~~~l~~~l~~~ 191 (195)
T cd01884 157 NTPIVRGSALKALEGDDPNKWVKKILELLDALDSY 191 (195)
T ss_pred CCeEEEeeCccccCCCCCCcchhcHhHHHHHHHhC
Confidence 678999999999985 4566665544
No 208
>PRK10218 GTP-binding protein; Provisional
Probab=99.85 E-value=7.8e-20 Score=142.92 Aligned_cols=159 Identities=17% Similarity=0.186 Sum_probs=112.0
Q ss_pred CccEEEEEcCCCCChHHHHHhhhcC--Ccccc-------------cCcccee----EEEEEECCeEEEEEEcCCChhhHH
Q 030233 16 CRIKLLMVGLDASGKTTILYKMKLG--EIVTT-------------TPTIGFN----VEAVEYKNKSFCVWDVGGQNKIRA 76 (181)
Q Consensus 16 ~~~~i~~~G~~~~GKssl~~~~~~~--~~~~~-------------~~~~~~~----~~~~~~~~~~~~i~d~~g~~~~~~ 76 (181)
+--+|+++|+.++|||||+++++.. .+... ..+.+++ ...+.+.+..+.+|||||+.+|..
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~ 83 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG 83 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence 3457999999999999999999863 22211 1122333 334566889999999999999999
Q ss_pred HHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHH---HHhhhCcccc--CCc
Q 030233 77 LWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAE---VADKLELYSL--GQR 151 (181)
Q Consensus 77 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~---~~~~~~~~~~--~~~ 151 (181)
.+..+++.+|++++|+|+.+.. .......+..+.. .++|.++++||+|+.+....+. +...+..... ...
T Consensus 84 ~v~~~l~~aDg~ILVVDa~~G~-~~qt~~~l~~a~~----~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~ 158 (607)
T PRK10218 84 EVERVMSMVDSVLLVVDAFDGP-MPQTRFVTKKAFA----YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQL 158 (607)
T ss_pred HHHHHHHhCCEEEEEEecccCc-cHHHHHHHHHHHH----cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCcccccc
Confidence 9999999999999999997642 2233344444433 3688899999999875433332 2222211111 223
Q ss_pred cEEEEEeeccCCC----------CHHHHHHHHHhhhhc
Q 030233 152 RWSIQSCSAISGQ----------GLYEGLDWLSNNISV 179 (181)
Q Consensus 152 ~~~~~~~Sa~~~~----------~i~~l~~~i~~~~~~ 179 (181)
.++++.+||.+|. ++..+++.+.+.+..
T Consensus 159 ~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~ 196 (607)
T PRK10218 159 DFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPA 196 (607)
T ss_pred CCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCC
Confidence 5689999999998 589999999887753
No 209
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.85 E-value=4.4e-20 Score=147.85 Aligned_cols=151 Identities=20% Similarity=0.189 Sum_probs=104.3
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEE----EEEECCeEEEEEEcCCChhhHH----------HHHh
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVE----AVEYKNKSFCVWDVGGQNKIRA----------LWRH 80 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~d~~g~~~~~~----------~~~~ 80 (181)
++.++|+++|++|+|||||+|++.+... .....+|++.. .+...+..+.++||||...+.. ....
T Consensus 1 ~~~~~IaLvG~pNvGKSTLfN~Ltg~~~-~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~ 79 (772)
T PRK09554 1 MKKLTIGLIGNPNSGKTTLFNQLTGARQ-RVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACH 79 (772)
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCC-ccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHH
Confidence 3567999999999999999999988653 33344554443 3455788999999999765431 1222
Q ss_pred hc--cCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEe
Q 030233 81 YF--RDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSC 158 (181)
Q Consensus 81 ~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (181)
++ ..+|++++|+|+++.+.- ..+...+.+ .++|+++++||+|+.+........+.+. +..+.+++++
T Consensus 80 ~l~~~~aD~vI~VvDat~ler~---l~l~~ql~e----~giPvIvVlNK~Dl~~~~~i~id~~~L~----~~LG~pVvpi 148 (772)
T PRK09554 80 YILSGDADLLINVVDASNLERN---LYLTLQLLE----LGIPCIVALNMLDIAEKQNIRIDIDALS----ARLGCPVIPL 148 (772)
T ss_pred HHhccCCCEEEEEecCCcchhh---HHHHHHHHH----cCCCEEEEEEchhhhhccCcHHHHHHHH----HHhCCCEEEE
Confidence 32 478999999999875432 223333333 3799999999999864333222222221 1234579999
Q ss_pred eccCCCCHHHHHHHHHhhh
Q 030233 159 SAISGQGLYEGLDWLSNNI 177 (181)
Q Consensus 159 Sa~~~~~i~~l~~~i~~~~ 177 (181)
||++|+|++++.+.+.+..
T Consensus 149 SA~~g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 149 VSTRGRGIEALKLAIDRHQ 167 (772)
T ss_pred EeecCCCHHHHHHHHHHhh
Confidence 9999999999999987654
No 210
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=7.3e-21 Score=122.00 Aligned_cols=163 Identities=33% Similarity=0.572 Sum_probs=141.6
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEECCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEEC
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDS 94 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~ 94 (181)
++.=+++++|-.++|||||++-+-......+.||.-.+...+.+.+..++.+|.+|+..-+..|..++..+|++++.+|+
T Consensus 18 kK~gKllFlGLDNAGKTTLLHMLKdDrl~qhvPTlHPTSE~l~Ig~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~lvda 97 (193)
T KOG0077|consen 18 KKFGKLLFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELSIGGMTFTTFDLGGHLQARRVWKDYFPQVDAIVYLVDA 97 (193)
T ss_pred ccCceEEEEeecCCchhhHHHHHccccccccCCCcCCChHHheecCceEEEEccccHHHHHHHHHHHHhhhceeEeeeeh
Confidence 45678999999999999999999888788888888877888888999999999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCcccc------------CCccEEEEEeeccC
Q 030233 95 SDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSL------------GQRRWSIQSCSAIS 162 (181)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~Sa~~ 162 (181)
.+.+.|.+.+..++.++........|+++.+||+|.+...+.++.+....+... ..+.+.++.||...
T Consensus 98 ~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evfmcsi~~ 177 (193)
T KOG0077|consen 98 YDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAASEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVFMCSIVR 177 (193)
T ss_pred hhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcccHHHHHHHHHHHHHhcccccccccCCCCCeEEEEEEEEEc
Confidence 999999999998888887766678999999999999998888877766643322 23566789999999
Q ss_pred CCCHHHHHHHHHhhh
Q 030233 163 GQGLYEGLDWLSNNI 177 (181)
Q Consensus 163 ~~~i~~l~~~i~~~~ 177 (181)
+.+--+.|.|+...+
T Consensus 178 ~~gy~e~fkwl~qyi 192 (193)
T KOG0077|consen 178 KMGYGEGFKWLSQYI 192 (193)
T ss_pred cCccceeeeehhhhc
Confidence 999999998887654
No 211
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.85 E-value=1.4e-20 Score=147.36 Aligned_cols=142 Identities=20% Similarity=0.206 Sum_probs=95.8
Q ss_pred cCCCCChHHHHHhhhcCCcccccCcccee----EEEEEECCeEEEEEEcCCChhhHHH------HHhhc--cCCCEEEEE
Q 030233 24 GLDASGKTTILYKMKLGEIVTTTPTIGFN----VEAVEYKNKSFCVWDVGGQNKIRAL------WRHYF--RDTLGLTFV 91 (181)
Q Consensus 24 G~~~~GKssl~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~i~d~~g~~~~~~~------~~~~~--~~~d~ii~v 91 (181)
|.+|+|||||+|++.+... ...+.++++ ...+.+.+..+.+|||||...+... ...++ ..+|++++|
T Consensus 1 G~pNvGKSSL~N~Ltg~~~-~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~V 79 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQ-TVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNV 79 (591)
T ss_pred CCCCCCHHHHHHHHhCCCC-eecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEE
Confidence 8999999999999998764 222333333 2345567788999999997765432 33333 368999999
Q ss_pred EECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHHH
Q 030233 92 VDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLD 171 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 171 (181)
+|.++.+. ...+...+.+ .+.|+++++||+|+.+........+.+. +..+.+++++||++|+|++++++
T Consensus 80 vDat~ler---~l~l~~ql~~----~~~PiIIVlNK~Dl~~~~~i~~d~~~L~----~~lg~pvv~tSA~tg~Gi~eL~~ 148 (591)
T TIGR00437 80 VDASNLER---NLYLTLQLLE----LGIPMILALNLVDEAEKKGIRIDEEKLE----ERLGVPVVPTSATEGRGIERLKD 148 (591)
T ss_pred ecCCcchh---hHHHHHHHHh----cCCCEEEEEehhHHHHhCCChhhHHHHH----HHcCCCEEEEECCCCCCHHHHHH
Confidence 99986432 2223333322 3689999999999864322211111111 12345799999999999999999
Q ss_pred HHHhhh
Q 030233 172 WLSNNI 177 (181)
Q Consensus 172 ~i~~~~ 177 (181)
++.+..
T Consensus 149 ~i~~~~ 154 (591)
T TIGR00437 149 AIRKAI 154 (591)
T ss_pred HHHHHh
Confidence 998753
No 212
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.85 E-value=8.8e-20 Score=122.21 Aligned_cols=154 Identities=18% Similarity=0.203 Sum_probs=97.6
Q ss_pred EEEEEcCCCCChHHHHHhhhcCC-cccccCccceeEEEEEE-CCeEEEEEEcCCChh----------hHHHHHhhcc---
Q 030233 19 KLLMVGLDASGKTTILYKMKLGE-IVTTTPTIGFNVEAVEY-KNKSFCVWDVGGQNK----------IRALWRHYFR--- 83 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~i~d~~g~~~----------~~~~~~~~~~--- 83 (181)
.|+++|++|+|||||++.++++. .+...++.+.+.....+ .+..+.+|||||... +......++.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVNDKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENRE 80 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccCeEEEecCCCccccccCHHHHHHHHHHHHHHHHhCh
Confidence 37999999999999999999544 44455555544333222 234899999999432 3333344443
Q ss_pred CCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCcccc-CCccEEEEEeeccC
Q 030233 84 DTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSL-GQRRWSIQSCSAIS 162 (181)
Q Consensus 84 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~ 162 (181)
..+++++++|..+..+... ..+...+.. .+.|+++++||+|+.................. .....+++++||++
T Consensus 81 ~~~~~~~v~d~~~~~~~~~--~~~~~~l~~---~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sa~~ 155 (170)
T cd01876 81 NLKGVVLLIDSRHGPTEID--LEMLDWLEE---LGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFSSLK 155 (170)
T ss_pred hhhEEEEEEEcCcCCCHhH--HHHHHHHHH---cCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEecCC
Confidence 4578899999976532221 112222222 25899999999998654333322222211110 12345799999999
Q ss_pred CCCHHHHHHHHHhhh
Q 030233 163 GQGLYEGLDWLSNNI 177 (181)
Q Consensus 163 ~~~i~~l~~~i~~~~ 177 (181)
+.++++++++|.+.+
T Consensus 156 ~~~~~~l~~~l~~~~ 170 (170)
T cd01876 156 GQGIDELRALIEKWL 170 (170)
T ss_pred CCCHHHHHHHHHHhC
Confidence 999999999998753
No 213
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.85 E-value=2.2e-20 Score=130.38 Aligned_cols=146 Identities=18% Similarity=0.176 Sum_probs=95.8
Q ss_pred EEEEEcCCCCChHHHHHhhhcCC--cc--------------------------------cccCccceeEEEEEECCeEEE
Q 030233 19 KLLMVGLDASGKTTILYKMKLGE--IV--------------------------------TTTPTIGFNVEAVEYKNKSFC 64 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~~~--~~--------------------------------~~~~~~~~~~~~~~~~~~~~~ 64 (181)
+|+++|+.++|||||+.+++... .. ....|.......+.+.+..+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 58999999999999999996321 00 011123333445666889999
Q ss_pred EEEcCCChhhHHHHHhhccCCCEEEEEEECCCcc-----cH-HHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC-C--
Q 030233 65 VWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRE-----RI-SEARNELHQILSDNELSNAALLVFANKQDLPNVM-P-- 135 (181)
Q Consensus 65 i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~-----s~-~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~-~-- 135 (181)
+|||||+..+...+...+..+|++++|+|+++.. .. ......+... ... ...|+++++||+|+.... +
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~iiivvNK~Dl~~~~~~~~ 157 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLA-RTL--GVKQLIVAVNKMDDVTVNWSEE 157 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHH-HHc--CCCeEEEEEEccccccccccHH
Confidence 9999999888887777888999999999998742 11 1122222222 221 246899999999997421 1
Q ss_pred -HHHHHhhh----CccccCCccEEEEEeeccCCCCHH
Q 030233 136 -TAEVADKL----ELYSLGQRRWSIQSCSAISGQGLY 167 (181)
Q Consensus 136 -~~~~~~~~----~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (181)
.+.+...+ .........++++++||++|+|++
T Consensus 158 ~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 158 RYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred HHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 22222222 111112235789999999999987
No 214
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.84 E-value=1.6e-19 Score=126.03 Aligned_cols=152 Identities=21% Similarity=0.206 Sum_probs=99.3
Q ss_pred EEEEEcCCCCChHHHHHhhhcCCcccc-----------------cC-------ccceeE-----------------EEEE
Q 030233 19 KLLMVGLDASGKTTILYKMKLGEIVTT-----------------TP-------TIGFNV-----------------EAVE 57 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~~~~~~~-----------------~~-------~~~~~~-----------------~~~~ 57 (181)
+|+++|+.++|||||++++..+.+... .. .++++. ..+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 578999999999999999986543210 00 111111 1233
Q ss_pred ECCeEEEEEEcCCChhhHHHHHhhcc--CCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC
Q 030233 58 YKNKSFCVWDVGGQNKIRALWRHYFR--DTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMP 135 (181)
Q Consensus 58 ~~~~~~~i~d~~g~~~~~~~~~~~~~--~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~ 135 (181)
..+..+.+.||||++++.......+. .+|++++|+|+..... ......+..+ .. .++|+++|+||+|+.+...
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~-~~d~~~l~~l-~~---~~ip~ivvvNK~D~~~~~~ 155 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGII-GMTKEHLGLA-LA---LNIPVFVVVTKIDLAPANI 155 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCc-HHHHHHHHHH-HH---cCCCEEEEEECccccCHHH
Confidence 35678999999999998776655554 6899999999875422 2222333333 22 3689999999999865433
Q ss_pred HHHH----HhhhCccc---------------------cCCccEEEEEeeccCCCCHHHHHHHHHh
Q 030233 136 TAEV----ADKLELYS---------------------LGQRRWSIQSCSAISGQGLYEGLDWLSN 175 (181)
Q Consensus 136 ~~~~----~~~~~~~~---------------------~~~~~~~~~~~Sa~~~~~i~~l~~~i~~ 175 (181)
.... .+.+.... ......++|.+||.+|+|++++++.|..
T Consensus 156 ~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 156 LQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred HHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 3322 22222100 0123458999999999999999987753
No 215
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.84 E-value=1.5e-19 Score=141.29 Aligned_cols=154 Identities=20% Similarity=0.189 Sum_probs=102.7
Q ss_pred CCCccEEEEEcCCCCChHHHHHhhhcCCcccc-----cCccceeEEEEEEC----C------------eEEEEEEcCCCh
Q 030233 14 PQCRIKLLMVGLDASGKTTILYKMKLGEIVTT-----TPTIGFNVEAVEYK----N------------KSFCVWDVGGQN 72 (181)
Q Consensus 14 ~~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~-----~~~~~~~~~~~~~~----~------------~~~~i~d~~g~~ 72 (181)
..+++.|+++|++++|||||++++.+...... .++.|.+....... + ..+.+|||||++
T Consensus 3 ~~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e 82 (586)
T PRK04004 3 KLRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHE 82 (586)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChH
Confidence 45678899999999999999999987653322 22333332221110 0 127899999999
Q ss_pred hhHHHHHhhccCCCEEEEEEECCC---cccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--------------
Q 030233 73 KIRALWRHYFRDTLGLTFVVDSSD---RERISEARNELHQILSDNELSNAALLVFANKQDLPNVMP-------------- 135 (181)
Q Consensus 73 ~~~~~~~~~~~~~d~ii~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~-------------- 135 (181)
.|..++...+..+|++++|+|+++ +.++..+. . +.. .++|+++++||+|+.....
T Consensus 83 ~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~----~-~~~---~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~ 154 (586)
T PRK04004 83 AFTNLRKRGGALADIAILVVDINEGFQPQTIEAIN----I-LKR---RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQ 154 (586)
T ss_pred HHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHH----H-HHH---cCCCEEEEEECcCCchhhhhhcCchHHHHHhhh
Confidence 999998888899999999999986 44443332 1 222 3789999999999852110
Q ss_pred HHH-----------HHhhhCcccc----------CCccEEEEEeeccCCCCHHHHHHHHHh
Q 030233 136 TAE-----------VADKLELYSL----------GQRRWSIQSCSAISGQGLYEGLDWLSN 175 (181)
Q Consensus 136 ~~~-----------~~~~~~~~~~----------~~~~~~~~~~Sa~~~~~i~~l~~~i~~ 175 (181)
... +...+....+ .....+++++||.+|+|++++++.+..
T Consensus 155 ~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~ 215 (586)
T PRK04004 155 SQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAG 215 (586)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHH
Confidence 000 1111111110 013578999999999999999988764
No 216
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=9.3e-21 Score=124.08 Aligned_cols=156 Identities=22% Similarity=0.317 Sum_probs=130.8
Q ss_pred ccEEEEEcCCCCChHHHHHhhhcCCccc-ccCccceeEEEEEE----CCeEEEEEEcCCChhhHHHHHhhccCCCEEEEE
Q 030233 17 RIKLLMVGLDASGKTTILYKMKLGEIVT-TTPTIGFNVEAVEY----KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFV 91 (181)
Q Consensus 17 ~~~i~~~G~~~~GKssl~~~~~~~~~~~-~~~~~~~~~~~~~~----~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v 91 (181)
.++++++|+.|.||||++++.+.+.+.. +.+|+|........ ..+.+..|||+|++.+......++-+..+.+++
T Consensus 10 ~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAiim 89 (216)
T KOG0096|consen 10 TFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAIIM 89 (216)
T ss_pred eEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeEEE
Confidence 6899999999999999999999999754 78899988776544 348999999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHHH
Q 030233 92 VDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLD 171 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 171 (181)
||+...-++.+...|...+.+... ++|+++++||.|...... ..+ ........++.+++.||+.+.|.+.-|-
T Consensus 90 FdVtsr~t~~n~~rwhrd~~rv~~--NiPiv~cGNKvDi~~r~~---k~k--~v~~~rkknl~y~~iSaksn~NfekPFl 162 (216)
T KOG0096|consen 90 FDVTSRFTYKNVPRWHRDLVRVRE--NIPIVLCGNKVDIKARKV---KAK--PVSFHRKKNLQYYEISAKSNYNFERPFL 162 (216)
T ss_pred eeeeehhhhhcchHHHHHHHHHhc--CCCeeeeccceecccccc---ccc--cceeeecccceeEEeecccccccccchH
Confidence 999999899999999999877643 599999999999765321 111 1222256788999999999999999999
Q ss_pred HHHhhhhc
Q 030233 172 WLSNNISV 179 (181)
Q Consensus 172 ~i~~~~~~ 179 (181)
|+++++..
T Consensus 163 ~LarKl~G 170 (216)
T KOG0096|consen 163 WLARKLTG 170 (216)
T ss_pred HHhhhhcC
Confidence 99988753
No 217
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.84 E-value=6.6e-20 Score=117.34 Aligned_cols=135 Identities=22% Similarity=0.300 Sum_probs=91.6
Q ss_pred EEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEECCeEEEEEEcCC----ChhhHHHHHhhccCCCEEEEEEEC
Q 030233 19 KLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGG----QNKIRALWRHYFRDTLGLTFVVDS 94 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g----~~~~~~~~~~~~~~~d~ii~v~d~ 94 (181)
||+++|+.|+|||||++++.+... .+..|..+ .+.+ .++|||| ...+..-......++|.+++|.|+
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~-~~~KTq~i-----~~~~---~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~da 73 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEI-RYKKTQAI-----EYYD---NTIDTPGEYIENPRFYHALIVTAQDADVVLLLQDA 73 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCC-CcCcccee-----Eecc---cEEECChhheeCHHHHHHHHHHHhhCCEEEEEecC
Confidence 689999999999999999987654 22222222 1222 4589999 334444444555689999999999
Q ss_pred CCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCC-CCCCHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHHHHH
Q 030233 95 SDRERISEARNELHQILSDNELSNAALLVFANKQDLP-NVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWL 173 (181)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i 173 (181)
+++.+. ....+... -..|+|=|+||+|+. +..+.+...+.+... +.. .+|++|+.+|+|+++|.++|
T Consensus 74 t~~~~~--~pP~fa~~------f~~pvIGVITK~Dl~~~~~~i~~a~~~L~~a--G~~--~if~vS~~~~eGi~eL~~~L 141 (143)
T PF10662_consen 74 TEPRSV--FPPGFASM------FNKPVIGVITKIDLPSDDANIERAKKWLKNA--GVK--EIFEVSAVTGEGIEELKDYL 141 (143)
T ss_pred CCCCcc--CCchhhcc------cCCCEEEEEECccCccchhhHHHHHHHHHHc--CCC--CeEEEECCCCcCHHHHHHHH
Confidence 976431 11222222 257999999999998 334444444444433 223 36999999999999999988
Q ss_pred H
Q 030233 174 S 174 (181)
Q Consensus 174 ~ 174 (181)
.
T Consensus 142 ~ 142 (143)
T PF10662_consen 142 E 142 (143)
T ss_pred h
Confidence 5
No 218
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.84 E-value=1.7e-19 Score=141.67 Aligned_cols=155 Identities=20% Similarity=0.137 Sum_probs=104.2
Q ss_pred EEEEEcCCCCChHHHHHhhhcCCcc----c--ccCccceeEEEEEE-CCeEEEEEEcCCChhhHHHHHhhccCCCEEEEE
Q 030233 19 KLLMVGLDASGKTTILYKMKLGEIV----T--TTPTIGFNVEAVEY-KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFV 91 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~~~~~----~--~~~~~~~~~~~~~~-~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v 91 (181)
-|+++|+.++|||||++++.+.... + ...|+...+..+.. .+..+.+|||||+++|.......+..+|++++|
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lLV 81 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHALLV 81 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHHHHHHHHHhhcCCEEEEE
Confidence 5899999999999999999874321 1 23444444344433 456789999999999988877888999999999
Q ss_pred EECCCcccHHHHHHHHHHHHcCCCCCCCe-EEEEEeCCCCCCCCCHHHHHhhhCccc--cCCccEEEEEeeccCCCCHHH
Q 030233 92 VDSSDRERISEARNELHQILSDNELSNAA-LLVFANKQDLPNVMPTAEVADKLELYS--LGQRRWSIQSCSAISGQGLYE 168 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~D~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Sa~~~~~i~~ 168 (181)
+|+++.- .....+.+. ++.. .++| +++|+||+|+.+....+.....+.... ......+++++||++|+|+++
T Consensus 82 Vda~eg~-~~qT~ehl~-il~~---lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~ 156 (614)
T PRK10512 82 VACDDGV-MAQTREHLA-ILQL---TGNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGIDA 156 (614)
T ss_pred EECCCCC-cHHHHHHHH-HHHH---cCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCHH
Confidence 9997531 112222222 2222 2344 689999999875333322222221111 122346799999999999999
Q ss_pred HHHHHHhhhh
Q 030233 169 GLDWLSNNIS 178 (181)
Q Consensus 169 l~~~i~~~~~ 178 (181)
+++.|.+...
T Consensus 157 L~~~L~~~~~ 166 (614)
T PRK10512 157 LREHLLQLPE 166 (614)
T ss_pred HHHHHHHhhc
Confidence 9999987543
No 219
>PRK12736 elongation factor Tu; Reviewed
Probab=99.82 E-value=6.7e-19 Score=132.58 Aligned_cols=160 Identities=19% Similarity=0.176 Sum_probs=106.1
Q ss_pred CCCccEEEEEcCCCCChHHHHHhhhcCCc----------c---------cccCccceeEEEEEECCeEEEEEEcCCChhh
Q 030233 14 PQCRIKLLMVGLDASGKTTILYKMKLGEI----------V---------TTTPTIGFNVEAVEYKNKSFCVWDVGGQNKI 74 (181)
Q Consensus 14 ~~~~~~i~~~G~~~~GKssl~~~~~~~~~----------~---------~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~ 74 (181)
.++.++|+++|+.++|||||++++++... . ....|.......+...+..+.++||||+++|
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f 88 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADY 88 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHH
Confidence 45678999999999999999999986310 0 1122333333333346678999999999999
Q ss_pred HHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCe-EEEEEeCCCCCCCCCHH-----HHHhhhCcccc
Q 030233 75 RALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAA-LLVFANKQDLPNVMPTA-----EVADKLELYSL 148 (181)
Q Consensus 75 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~D~~~~~~~~-----~~~~~~~~~~~ 148 (181)
.......+..+|++++|+|+.+.- .....+.+..+.. .++| +|+++||+|+.+..... ++...+....+
T Consensus 89 ~~~~~~~~~~~d~~llVvd~~~g~-~~~t~~~~~~~~~----~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~ 163 (394)
T PRK12736 89 VKNMITGAAQMDGAILVVAATDGP-MPQTREHILLARQ----VGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDF 163 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCC-chhHHHHHHHHHH----cCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCC
Confidence 888777788899999999997531 1222233333322 2566 78899999987422211 22222221222
Q ss_pred CCccEEEEEeeccCCC--------CHHHHHHHHHhhhh
Q 030233 149 GQRRWSIQSCSAISGQ--------GLYEGLDWLSNNIS 178 (181)
Q Consensus 149 ~~~~~~~~~~Sa~~~~--------~i~~l~~~i~~~~~ 178 (181)
.....+++++||++|. ++.++++.+.+.+.
T Consensus 164 ~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp 201 (394)
T PRK12736 164 PGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP 201 (394)
T ss_pred CcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence 2235689999999983 68899998887654
No 220
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.82 E-value=3.5e-18 Score=122.24 Aligned_cols=110 Identities=17% Similarity=0.202 Sum_probs=79.7
Q ss_pred EEEEEcCCCCChHHHHHhhhcCC--ccc-----------------------ccCccceeEEEEEECCeEEEEEEcCCChh
Q 030233 19 KLLMVGLDASGKTTILYKMKLGE--IVT-----------------------TTPTIGFNVEAVEYKNKSFCVWDVGGQNK 73 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~~~--~~~-----------------------~~~~~~~~~~~~~~~~~~~~i~d~~g~~~ 73 (181)
+|+++|++|+|||||+++++... ... ...++......+.+.+..+.+|||||+.+
T Consensus 4 ni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~d 83 (267)
T cd04169 4 TFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHED 83 (267)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCchH
Confidence 58999999999999999997522 110 01122233445677899999999999999
Q ss_pred hHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 030233 74 IRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV 133 (181)
Q Consensus 74 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~ 133 (181)
|.......++.+|++++|+|+++.... ....++. .... .++|+++++||+|+.+.
T Consensus 84 f~~~~~~~l~~aD~~IlVvda~~g~~~-~~~~i~~-~~~~---~~~P~iivvNK~D~~~a 138 (267)
T cd04169 84 FSEDTYRTLTAVDSAVMVIDAAKGVEP-QTRKLFE-VCRL---RGIPIITFINKLDREGR 138 (267)
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCccH-HHHHHHH-HHHh---cCCCEEEEEECCccCCC
Confidence 888777888999999999999764322 2223333 2222 47899999999998653
No 221
>PRK12735 elongation factor Tu; Reviewed
Probab=99.81 E-value=2.5e-18 Score=129.62 Aligned_cols=158 Identities=20% Similarity=0.171 Sum_probs=103.6
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhcCC-------c---c---------cccCccceeEEEEEECCeEEEEEEcCCChhhH
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKLGE-------I---V---------TTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIR 75 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~~~-------~---~---------~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~ 75 (181)
+..++|+++|++++|||||++++++.. . . ....|.......+...+..+.++||||+++|.
T Consensus 10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f~ 89 (396)
T PRK12735 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADYV 89 (396)
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHHH
Confidence 457899999999999999999998621 1 0 11222333233344466789999999999988
Q ss_pred HHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEE-EEEeCCCCCCCCCH-H----HHHhhhCccccC
Q 030233 76 ALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALL-VFANKQDLPNVMPT-A----EVADKLELYSLG 149 (181)
Q Consensus 76 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii-lv~nK~D~~~~~~~-~----~~~~~~~~~~~~ 149 (181)
......+..+|++++|+|+.+.. .....+.+..+.. .++|.+ +++||+|+.+.... + ++...+......
T Consensus 90 ~~~~~~~~~aD~~llVvda~~g~-~~qt~e~l~~~~~----~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~~ 164 (396)
T PRK12735 90 KNMITGAAQMDGAILVVSAADGP-MPQTREHILLARQ----VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFP 164 (396)
T ss_pred HHHHhhhccCCEEEEEEECCCCC-chhHHHHHHHHHH----cCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCCC
Confidence 87778888999999999997532 1222233333322 356755 68999998742221 1 222222211111
Q ss_pred CccEEEEEeeccCCC----------CHHHHHHHHHhhh
Q 030233 150 QRRWSIQSCSAISGQ----------GLYEGLDWLSNNI 177 (181)
Q Consensus 150 ~~~~~~~~~Sa~~~~----------~i~~l~~~i~~~~ 177 (181)
..+.+++++||.+|. ++.++++.|.+.+
T Consensus 165 ~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~ 202 (396)
T PRK12735 165 GDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYI 202 (396)
T ss_pred cCceeEEecchhccccCCCCCcccccHHHHHHHHHhcC
Confidence 135789999999984 6888888888765
No 222
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.81 E-value=2.1e-19 Score=135.63 Aligned_cols=161 Identities=14% Similarity=0.181 Sum_probs=119.0
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeE---EEEEECCeEEEEEEcCCChhhHHHHHhhccCCCEEEEE
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNV---EAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFV 91 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v 91 (181)
.+.+||+++|+.|+|||||+-+++..++++..|..-... ..+.-+.....+.|++..++-+......++.++++.++
T Consensus 7 ~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~lv 86 (625)
T KOG1707|consen 7 LKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVICLV 86 (625)
T ss_pred ccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccCCccCcCcCceEEEecccccchhHHHHHHHhhcCEEEEE
Confidence 568999999999999999999999988766544321110 11112445689999998777666666788899999999
Q ss_pred EECCCcccHHHHHHHHHHHHcCCC--CCCCeEEEEEeCCCCCCCCCH--HH-HHhhhCccccCCccEEEEEeeccCCCCH
Q 030233 92 VDSSDRERISEARNELHQILSDNE--LSNAALLVFANKQDLPNVMPT--AE-VADKLELYSLGQRRWSIQSCSAISGQGL 166 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~~piilv~nK~D~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 166 (181)
|+.+++++++.+...|..+++... ..++|+|+|+||+|....... +. +....... ...-.+++|||++-.++
T Consensus 87 yavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f---~EiEtciecSA~~~~n~ 163 (625)
T KOG1707|consen 87 YAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAF---AEIETCIECSALTLANV 163 (625)
T ss_pred EecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHh---HHHHHHHhhhhhhhhhh
Confidence 999999999999988887776532 357999999999998765443 22 22211111 11114899999999999
Q ss_pred HHHHHHHHhhhh
Q 030233 167 YEGLDWLSNNIS 178 (181)
Q Consensus 167 ~~l~~~i~~~~~ 178 (181)
.++|+...+++.
T Consensus 164 ~e~fYyaqKaVi 175 (625)
T KOG1707|consen 164 SELFYYAQKAVI 175 (625)
T ss_pred Hhhhhhhhheee
Confidence 999999887754
No 223
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.80 E-value=2.2e-18 Score=121.25 Aligned_cols=160 Identities=16% Similarity=0.135 Sum_probs=106.0
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEE----EEECCeEEEEEEcCCCh---------hhH---HHH
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEA----VEYKNKSFCVWDVGGQN---------KIR---ALW 78 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~i~d~~g~~---------~~~---~~~ 78 (181)
.+.++|+++|+|++|||||.|.+.|......+..+.++... +.-.+.++.++||||.. ... +..
T Consensus 70 ~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~ 149 (379)
T KOG1423|consen 70 QKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNP 149 (379)
T ss_pred ceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhCH
Confidence 46689999999999999999999999865555444444443 44478899999999921 111 123
Q ss_pred HhhccCCCEEEEEEECCCcccHH--HHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC-----------------HHHH
Q 030233 79 RHYFRDTLGLTFVVDSSDRERIS--EARNELHQILSDNELSNAALLVFANKQDLPNVMP-----------------TAEV 139 (181)
Q Consensus 79 ~~~~~~~d~ii~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~-----------------~~~~ 139 (181)
......+|++++|+|+++....- .....+... ..+|-++|+||.|...... ..++
T Consensus 150 ~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~y------s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v 223 (379)
T KOG1423|consen 150 RDAAQNADCVVVVVDASATRTPLHPRVLHMLEEY------SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEV 223 (379)
T ss_pred HHHHhhCCEEEEEEeccCCcCccChHHHHHHHHH------hcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhH
Confidence 34667899999999998632211 112222222 4688999999999765311 1112
Q ss_pred HhhhCccc-----cCCc----cEEEEEeeccCCCCHHHHHHHHHhhhhcc
Q 030233 140 ADKLELYS-----LGQR----RWSIQSCSAISGQGLYEGLDWLSNNISVK 180 (181)
Q Consensus 140 ~~~~~~~~-----~~~~----~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~ 180 (181)
.+...... .... .-.+|.+||++|+|++++-++|..++...
T Consensus 224 ~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~g 273 (379)
T KOG1423|consen 224 QEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPG 273 (379)
T ss_pred HHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCC
Confidence 22221111 0111 22599999999999999999999887653
No 224
>PRK13351 elongation factor G; Reviewed
Probab=99.80 E-value=4.8e-18 Score=136.21 Aligned_cols=115 Identities=17% Similarity=0.109 Sum_probs=88.4
Q ss_pred CCCccEEEEEcCCCCChHHHHHhhhcCCc--------------c-------cccCccceeEEEEEECCeEEEEEEcCCCh
Q 030233 14 PQCRIKLLMVGLDASGKTTILYKMKLGEI--------------V-------TTTPTIGFNVEAVEYKNKSFCVWDVGGQN 72 (181)
Q Consensus 14 ~~~~~~i~~~G~~~~GKssl~~~~~~~~~--------------~-------~~~~~~~~~~~~~~~~~~~~~i~d~~g~~ 72 (181)
+++..+|+++|+.++|||||+++++...- . .+..|+......+.+.+..+.+|||||+.
T Consensus 5 ~~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~ 84 (687)
T PRK13351 5 LMQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHI 84 (687)
T ss_pred cccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcH
Confidence 34567899999999999999999975220 0 12345555556677789999999999999
Q ss_pred hhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 030233 73 KIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV 133 (181)
Q Consensus 73 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~ 133 (181)
++...+..+++.+|++++|+|+++......... +..+ .. .++|+++++||+|+...
T Consensus 85 df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~-~~~~-~~---~~~p~iiviNK~D~~~~ 140 (687)
T PRK13351 85 DFTGEVERSLRVLDGAVVVFDAVTGVQPQTETV-WRQA-DR---YGIPRLIFINKMDRVGA 140 (687)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHH-HHHH-Hh---cCCCEEEEEECCCCCCC
Confidence 999999999999999999999987665554333 3333 22 36899999999998763
No 225
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.79 E-value=1.7e-18 Score=120.56 Aligned_cols=155 Identities=17% Similarity=0.135 Sum_probs=98.1
Q ss_pred EEEEEcCCCCChHHHHHhhhcCCcccc------------c------Ccccee----EEEEEE-----CCeEEEEEEcCCC
Q 030233 19 KLLMVGLDASGKTTILYKMKLGEIVTT------------T------PTIGFN----VEAVEY-----KNKSFCVWDVGGQ 71 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~~~~~~~------------~------~~~~~~----~~~~~~-----~~~~~~i~d~~g~ 71 (181)
+|+++|+.++|||||+++++....... . ...+.+ ...+.+ ....+.+|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 589999999999999999987442110 0 011111 111222 2478999999999
Q ss_pred hhhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC-------CCHHHHHhhhC
Q 030233 72 NKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV-------MPTAEVADKLE 144 (181)
Q Consensus 72 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~-------~~~~~~~~~~~ 144 (181)
.++.......+..+|++++|+|+.+..+... ..++..... .+.|+++++||+|+... ...+.+.+...
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~----~~~p~iiviNK~D~~~~~~~l~~~~~~~~l~~~i~ 156 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL----EGLPIVLVINKIDRLILELKLPPNDAYFKLRHIID 156 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECcccCcccccCCHHHHHHHHHHHHH
Confidence 9998888889999999999999987655432 233333322 25899999999997521 11111111111
Q ss_pred -------ccccC------CccEEEEEeeccCCCCHH--------HHHHHHHhhhh
Q 030233 145 -------LYSLG------QRRWSIQSCSAISGQGLY--------EGLDWLSNNIS 178 (181)
Q Consensus 145 -------~~~~~------~~~~~~~~~Sa~~~~~i~--------~l~~~i~~~~~ 178 (181)
..... ..+-.++++|++.+.++. ++++.|...+.
T Consensus 157 ~~n~~~~~~~~~~~~~~~p~~~nv~~~s~~~~w~~~~~~~~~~~~~~~~~~~~~~ 211 (213)
T cd04167 157 EVNNIIASFSTTLSFLFSPENGNVCFASSKFGFCFTLESFAKKYGLVDSIVSNIP 211 (213)
T ss_pred HHHHHHHHhcCCCceEeccCCCeEEEEecCCCeEEecHHHHhhhhHHHHHHhhCC
Confidence 01000 012247889999988776 77777766553
No 226
>CHL00071 tufA elongation factor Tu
Probab=99.79 E-value=5.5e-18 Score=128.23 Aligned_cols=147 Identities=19% Similarity=0.185 Sum_probs=96.0
Q ss_pred CCCccEEEEEcCCCCChHHHHHhhhcCCcc---------------c----ccCccceeEEEEEECCeEEEEEEcCCChhh
Q 030233 14 PQCRIKLLMVGLDASGKTTILYKMKLGEIV---------------T----TTPTIGFNVEAVEYKNKSFCVWDVGGQNKI 74 (181)
Q Consensus 14 ~~~~~~i~~~G~~~~GKssl~~~~~~~~~~---------------~----~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~ 74 (181)
++..++|+++|++++|||||++++++..-. . ...|.......+...+..+.+.||||+.+|
T Consensus 9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~ 88 (409)
T CHL00071 9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY 88 (409)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHH
Confidence 456789999999999999999999864210 0 111222222234446778999999999998
Q ss_pred HHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCe-EEEEEeCCCCCCCCCH-H----HHHhhhCcccc
Q 030233 75 RALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAA-LLVFANKQDLPNVMPT-A----EVADKLELYSL 148 (181)
Q Consensus 75 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~D~~~~~~~-~----~~~~~~~~~~~ 148 (181)
.......+..+|++++|+|+...- .....+.+..+.. .++| +|+++||+|+.+.... + ++...+.....
T Consensus 89 ~~~~~~~~~~~D~~ilVvda~~g~-~~qt~~~~~~~~~----~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~ 163 (409)
T CHL00071 89 VKNMITGAAQMDGAILVVSAADGP-MPQTKEHILLAKQ----VGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDF 163 (409)
T ss_pred HHHHHHHHHhCCEEEEEEECCCCC-cHHHHHHHHHHHH----cCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 888888888999999999997532 1222333333322 3567 7789999998753221 1 22222221111
Q ss_pred CCccEEEEEeeccCCCC
Q 030233 149 GQRRWSIQSCSAISGQG 165 (181)
Q Consensus 149 ~~~~~~~~~~Sa~~~~~ 165 (181)
....++++++||.+|.|
T Consensus 164 ~~~~~~ii~~Sa~~g~n 180 (409)
T CHL00071 164 PGDDIPIVSGSALLALE 180 (409)
T ss_pred CCCcceEEEcchhhccc
Confidence 22357899999999874
No 227
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.79 E-value=1.1e-17 Score=126.23 Aligned_cols=157 Identities=19% Similarity=0.171 Sum_probs=99.7
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhcCC-------c-----c-------cccCccceeEEEEEECCeEEEEEEcCCChhhH
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKLGE-------I-----V-------TTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIR 75 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~~~-------~-----~-------~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~ 75 (181)
+..++|+++|+.++|||||+++|++.. . . ....|.......+...+..+.+|||||+++|.
T Consensus 10 ~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f~ 89 (394)
T TIGR00485 10 KPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADYV 89 (394)
T ss_pred CceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHHH
Confidence 457899999999999999999997421 0 0 01223333333344466789999999999998
Q ss_pred HHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCe-EEEEEeCCCCCCCCCH-H----HHHhhhCccccC
Q 030233 76 ALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAA-LLVFANKQDLPNVMPT-A----EVADKLELYSLG 149 (181)
Q Consensus 76 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~D~~~~~~~-~----~~~~~~~~~~~~ 149 (181)
.........+|++++|+|+.+.-. ....+.+..+... ++| +|+++||+|+.+.... + ++...+......
T Consensus 90 ~~~~~~~~~~D~~ilVvda~~g~~-~qt~e~l~~~~~~----gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~~~ 164 (394)
T TIGR00485 90 KNMITGAAQMDGAILVVSATDGPM-PQTREHILLARQV----GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYDFP 164 (394)
T ss_pred HHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc----CCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 777777788999999999976321 1222333333222 455 4578999998753221 1 222222222112
Q ss_pred CccEEEEEeeccCCC--------CHHHHHHHHHhh
Q 030233 150 QRRWSIQSCSAISGQ--------GLYEGLDWLSNN 176 (181)
Q Consensus 150 ~~~~~~~~~Sa~~~~--------~i~~l~~~i~~~ 176 (181)
..+++++++||.+|. ++.++++.+.+.
T Consensus 165 ~~~~~ii~vSa~~g~~g~~~~~~~~~~ll~~l~~~ 199 (394)
T TIGR00485 165 GDDTPIIRGSALKALEGDAEWEAKILELMDAVDEY 199 (394)
T ss_pred ccCccEEECccccccccCCchhHhHHHHHHHHHhc
Confidence 234789999999875 355666666543
No 228
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.79 E-value=2.8e-18 Score=119.36 Aligned_cols=158 Identities=21% Similarity=0.284 Sum_probs=103.1
Q ss_pred EEEEEcCCCCChHHHHHhhhcCCccc----ccCccceeEEEEEE-CCeEEEEEEcCCChhhHH-----HHHhhccCCCEE
Q 030233 19 KLLMVGLDASGKTTILYKMKLGEIVT----TTPTIGFNVEAVEY-KNKSFCVWDVGGQNKIRA-----LWRHYFRDTLGL 88 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~~~~~~----~~~~~~~~~~~~~~-~~~~~~i~d~~g~~~~~~-----~~~~~~~~~d~i 88 (181)
||+++|+.++||||+.+.+.++..+. ..+|..++...+.. ....+.+||.||+..+.. .....+++++++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~L 80 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGVL 80 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCEE
Confidence 78999999999999999999876443 35677777666654 677999999999875544 367788999999
Q ss_pred EEEEECCCcc---cHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCc----c--ccCCccEEEEEee
Q 030233 89 TFVVDSSDRE---RISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLEL----Y--SLGQRRWSIQSCS 159 (181)
Q Consensus 89 i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~----~--~~~~~~~~~~~~S 159 (181)
|||+|+.+.+ .+......+..+.+. .++..+-++++|+|+..+...++..+.... . ..+...+.++.+|
T Consensus 81 IyV~D~qs~~~~~~l~~~~~~i~~l~~~--sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TS 158 (232)
T PF04670_consen 81 IYVFDAQSDDYDEDLAYLSDCIEALRQY--SPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTS 158 (232)
T ss_dssp EEEEETT-STCHHHHHHHHHHHHHHHHH--STT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-
T ss_pred EEEEEcccccHHHHHHHHHHHHHHHHHh--CCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEecc
Confidence 9999998443 333444444444443 378999999999999764333332222111 0 1111248899999
Q ss_pred ccCCCCHHHHHHHHHhhhhc
Q 030233 160 AISGQGLYEGLDWLSNNISV 179 (181)
Q Consensus 160 a~~~~~i~~l~~~i~~~~~~ 179 (181)
..+ +.+-+.|..+.+.+..
T Consensus 159 I~D-~Sly~A~S~Ivq~LiP 177 (232)
T PF04670_consen 159 IWD-ESLYEAWSKIVQKLIP 177 (232)
T ss_dssp TTS-THHHHHHHHHHHTTST
T ss_pred CcC-cHHHHHHHHHHHHHcc
Confidence 988 7999999999888754
No 229
>COG2262 HflX GTPases [General function prediction only]
Probab=99.79 E-value=1.6e-17 Score=121.37 Aligned_cols=154 Identities=18% Similarity=0.176 Sum_probs=113.3
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhcCCc---ccccCccceeEEEEEEC-CeEEEEEEcCCC---------hhhHHHHHhh
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKLGEI---VTTTPTIGFNVEAVEYK-NKSFCVWDVGGQ---------NKIRALWRHY 81 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~~~~i~d~~g~---------~~~~~~~~~~ 81 (181)
..-+.|.++|-.++|||||+|++.+... .....|+..+.+.+.+. +..+.+-||.|. +.|++..+ .
T Consensus 190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AFksTLE-E 268 (411)
T COG2262 190 SGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAFKSTLE-E 268 (411)
T ss_pred cCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCCCceEEEecCccCcccCChHHHHHHHHHHH-H
Confidence 3457899999999999999999997663 34567888888888886 589999999993 23333333 3
Q ss_pred ccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeecc
Q 030233 82 FRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAI 161 (181)
Q Consensus 82 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (181)
..++|.++.|+|+++|.....+.....-+ ..-....+|+|+|+||+|+..... ........ . . ..+.+||+
T Consensus 269 ~~~aDlllhVVDaSdp~~~~~~~~v~~vL-~el~~~~~p~i~v~NKiD~~~~~~---~~~~~~~~---~-~-~~v~iSA~ 339 (411)
T COG2262 269 VKEADLLLHVVDASDPEILEKLEAVEDVL-AEIGADEIPIILVLNKIDLLEDEE---ILAELERG---S-P-NPVFISAK 339 (411)
T ss_pred hhcCCEEEEEeecCChhHHHHHHHHHHHH-HHcCCCCCCEEEEEecccccCchh---hhhhhhhc---C-C-CeEEEEec
Confidence 45799999999999996555555444443 333335699999999999876433 11111111 1 1 58999999
Q ss_pred CCCCHHHHHHHHHhhhh
Q 030233 162 SGQGLYEGLDWLSNNIS 178 (181)
Q Consensus 162 ~~~~i~~l~~~i~~~~~ 178 (181)
+|+|++.|.+.|.+.+.
T Consensus 340 ~~~gl~~L~~~i~~~l~ 356 (411)
T COG2262 340 TGEGLDLLRERIIELLS 356 (411)
T ss_pred cCcCHHHHHHHHHHHhh
Confidence 99999999999998776
No 230
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.78 E-value=4.7e-19 Score=118.31 Aligned_cols=128 Identities=30% Similarity=0.437 Sum_probs=83.0
Q ss_pred CccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEE---CCeEEEEEEcCCChhhHHHHHhh---ccCCCEEE
Q 030233 16 CRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEY---KNKSFCVWDVGGQNKIRALWRHY---FRDTLGLT 89 (181)
Q Consensus 16 ~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~d~~g~~~~~~~~~~~---~~~~d~ii 89 (181)
+.-.|+++|++|+|||+|+.++..+....+...+ ........ ....+.++|+|||++.+...... ...+.++|
T Consensus 2 k~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-e~n~~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~II 80 (181)
T PF09439_consen 2 KRPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-ENNIAYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGII 80 (181)
T ss_dssp ---EEEEE-STTSSHHHHHHHHHHSS---B---S-SEEEECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEEE
T ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-cCCceEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEEE
Confidence 3467999999999999999999998755444333 22223323 45689999999999988754444 77899999
Q ss_pred EEEECCC-cccHHHHHHHHHHHHcC--CCCCCCeEEEEEeCCCCCCCCCHHHHHhhhC
Q 030233 90 FVVDSSD-RERISEARNELHQILSD--NELSNAALLVFANKQDLPNVMPTAEVADKLE 144 (181)
Q Consensus 90 ~v~d~~~-~~s~~~~~~~~~~~~~~--~~~~~~piilv~nK~D~~~~~~~~~~~~~~~ 144 (181)
||+|.+. +..+....+++..++.. .....+|++++.||.|+....+...++..++
T Consensus 81 fvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~~~~~Ik~~LE 138 (181)
T PF09439_consen 81 FVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAKPPKKIKKLLE 138 (181)
T ss_dssp EEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT---HHHHHHHHH
T ss_pred EEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccCCHHHHHHHHH
Confidence 9999973 45566677766666543 1236799999999999987766666666554
No 231
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.78 E-value=1.2e-18 Score=119.81 Aligned_cols=157 Identities=14% Similarity=0.169 Sum_probs=96.7
Q ss_pred ccEEEEEcCCCCChHHHHHhhhcCCccc-ccCccce---eEEEEEE---CCeEEEEEEcCCChhhHH-----HHHhhccC
Q 030233 17 RIKLLMVGLDASGKTTILYKMKLGEIVT-TTPTIGF---NVEAVEY---KNKSFCVWDVGGQNKIRA-----LWRHYFRD 84 (181)
Q Consensus 17 ~~~i~~~G~~~~GKssl~~~~~~~~~~~-~~~~~~~---~~~~~~~---~~~~~~i~d~~g~~~~~~-----~~~~~~~~ 84 (181)
+++|+++|.+|+|||||+|.+++..... ..++.+. +.....+ ....+.+|||||...... +....+..
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~ 80 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFSE 80 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHHHhCccC
Confidence 4789999999999999999999865332 2222221 1111111 134789999999643211 12223567
Q ss_pred CCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC---------HHHHHhhhCcccc------C
Q 030233 85 TLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMP---------TAEVADKLELYSL------G 149 (181)
Q Consensus 85 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~---------~~~~~~~~~~~~~------~ 149 (181)
+|+++++.+. ++......+...+.. .+.|+++|+||+|+..... .+++...+..... +
T Consensus 81 ~d~~l~v~~~----~~~~~d~~~~~~l~~---~~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~ 153 (197)
T cd04104 81 YDFFIIISST----RFSSNDVKLAKAIQC---MGKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAG 153 (197)
T ss_pred cCEEEEEeCC----CCCHHHHHHHHHHHH---hCCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcC
Confidence 8998888542 355555544444444 2679999999999853211 1222221111100 1
Q ss_pred CccEEEEEeecc--CCCCHHHHHHHHHhhhhcc
Q 030233 150 QRRWSIQSCSAI--SGQGLYEGLDWLSNNISVK 180 (181)
Q Consensus 150 ~~~~~~~~~Sa~--~~~~i~~l~~~i~~~~~~~ 180 (181)
....++|.+|+. .+.++..+.+.+...+.++
T Consensus 154 ~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~ 186 (197)
T cd04104 154 VSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAH 186 (197)
T ss_pred CCCCCEEEEeCCChhhcChHHHHHHHHHHhhHH
Confidence 233479999998 6799999999999888754
No 232
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.78 E-value=8.6e-18 Score=116.91 Aligned_cols=108 Identities=18% Similarity=0.151 Sum_probs=77.3
Q ss_pred EEEEEcCCCCChHHHHHhhhcCC--ccc-----------------ccCccceeEEEEEEC----------CeEEEEEEcC
Q 030233 19 KLLMVGLDASGKTTILYKMKLGE--IVT-----------------TTPTIGFNVEAVEYK----------NKSFCVWDVG 69 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~~~--~~~-----------------~~~~~~~~~~~~~~~----------~~~~~i~d~~ 69 (181)
+|+++|+.++|||||+.+|+... ... ...|+......+.+. +..+.+||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 68999999999999999997543 110 011222222122222 6789999999
Q ss_pred CChhhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCC
Q 030233 70 GQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLP 131 (181)
Q Consensus 70 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~ 131 (181)
|+++|.......++.+|++++|+|+.+..+.+. ...+..... .++|+++++||+|+.
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t-~~~l~~~~~----~~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQT-ETVLRQALK----ERVKPVLVINKIDRL 138 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECCCcc
Confidence 999999999999999999999999987654443 223333322 357999999999975
No 233
>PRK00049 elongation factor Tu; Reviewed
Probab=99.78 E-value=1.5e-17 Score=125.35 Aligned_cols=159 Identities=19% Similarity=0.158 Sum_probs=104.8
Q ss_pred CCCccEEEEEcCCCCChHHHHHhhhcCCcc-------------------cccCccceeEEEEEECCeEEEEEEcCCChhh
Q 030233 14 PQCRIKLLMVGLDASGKTTILYKMKLGEIV-------------------TTTPTIGFNVEAVEYKNKSFCVWDVGGQNKI 74 (181)
Q Consensus 14 ~~~~~~i~~~G~~~~GKssl~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~ 74 (181)
.+..++|+++|+.++|||||++++++.... ....|.......+...+..+.+.||||+.+|
T Consensus 9 ~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f 88 (396)
T PRK00049 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADY 88 (396)
T ss_pred CCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHH
Confidence 356789999999999999999999863110 1122333333333346778999999999998
Q ss_pred HHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEE-EEEeCCCCCCCCC-HH----HHHhhhCcccc
Q 030233 75 RALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALL-VFANKQDLPNVMP-TA----EVADKLELYSL 148 (181)
Q Consensus 75 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii-lv~nK~D~~~~~~-~~----~~~~~~~~~~~ 148 (181)
.......+..+|++++|+|+.+.-. ....+.+..+.. .+.|.+ +++||+|+.+... .+ ++...+....+
T Consensus 89 ~~~~~~~~~~aD~~llVVDa~~g~~-~qt~~~~~~~~~----~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~ 163 (396)
T PRK00049 89 VKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQ----VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDF 163 (396)
T ss_pred HHHHHhhhccCCEEEEEEECCCCCc-hHHHHHHHHHHH----cCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCC
Confidence 8887788899999999999975321 222233333322 257865 6899999874222 11 22222221111
Q ss_pred CCccEEEEEeeccCCC----------CHHHHHHHHHhhh
Q 030233 149 GQRRWSIQSCSAISGQ----------GLYEGLDWLSNNI 177 (181)
Q Consensus 149 ~~~~~~~~~~Sa~~~~----------~i~~l~~~i~~~~ 177 (181)
...+++++++||.+|. ++.++++.|.+.+
T Consensus 164 ~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~ 202 (396)
T PRK00049 164 PGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYI 202 (396)
T ss_pred CccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcC
Confidence 2245789999999875 5778888887754
No 234
>PLN03126 Elongation factor Tu; Provisional
Probab=99.78 E-value=1.7e-17 Score=126.92 Aligned_cols=146 Identities=20% Similarity=0.193 Sum_probs=96.9
Q ss_pred CCCccEEEEEcCCCCChHHHHHhhhcCC------cc-------------cccCccceeEEEEEECCeEEEEEEcCCChhh
Q 030233 14 PQCRIKLLMVGLDASGKTTILYKMKLGE------IV-------------TTTPTIGFNVEAVEYKNKSFCVWDVGGQNKI 74 (181)
Q Consensus 14 ~~~~~~i~~~G~~~~GKssl~~~~~~~~------~~-------------~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~ 74 (181)
.+..++|+++|++++|||||+++|++.. .. ....|.......+...+..+.++|+||+++|
T Consensus 78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f 157 (478)
T PLN03126 78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY 157 (478)
T ss_pred cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHH
Confidence 3457899999999999999999998521 00 0112222333334557889999999999999
Q ss_pred HHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCe-EEEEEeCCCCCCCCC-HH----HHHhhhCcccc
Q 030233 75 RALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAA-LLVFANKQDLPNVMP-TA----EVADKLELYSL 148 (181)
Q Consensus 75 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~D~~~~~~-~~----~~~~~~~~~~~ 148 (181)
.......+..+|++++|+|+.+.. .....+.+..+.. .++| +|+++||+|+.+... .+ ++...+....+
T Consensus 158 ~~~~~~g~~~aD~ailVVda~~G~-~~qt~e~~~~~~~----~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~ 232 (478)
T PLN03126 158 VKNMITGAAQMDGAILVVSGADGP-MPQTKEHILLAKQ----VGVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEF 232 (478)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCC-cHHHHHHHHHHHH----cCCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCC
Confidence 888888888999999999997542 2222333433322 2566 788999999875221 12 22222222212
Q ss_pred CCccEEEEEeeccCCC
Q 030233 149 GQRRWSIQSCSAISGQ 164 (181)
Q Consensus 149 ~~~~~~~~~~Sa~~~~ 164 (181)
...+++++++||.+|.
T Consensus 233 ~~~~~~~vp~Sa~~g~ 248 (478)
T PLN03126 233 PGDDIPIISGSALLAL 248 (478)
T ss_pred CcCcceEEEEEccccc
Confidence 2346889999999885
No 235
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.77 E-value=7.2e-17 Score=124.98 Aligned_cols=113 Identities=18% Similarity=0.211 Sum_probs=81.3
Q ss_pred CccEEEEEcCCCCChHHHHHhhhc--CCccc-----------------------ccCccceeEEEEEECCeEEEEEEcCC
Q 030233 16 CRIKLLMVGLDASGKTTILYKMKL--GEIVT-----------------------TTPTIGFNVEAVEYKNKSFCVWDVGG 70 (181)
Q Consensus 16 ~~~~i~~~G~~~~GKssl~~~~~~--~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~i~d~~g 70 (181)
+.-+|+++|++++|||||.++++. +.... ...++......+.+.+..+.+|||||
T Consensus 9 ~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG 88 (526)
T PRK00741 9 KRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPG 88 (526)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCC
Confidence 445899999999999999999963 11100 01122233345667889999999999
Q ss_pred ChhhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 030233 71 QNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV 133 (181)
Q Consensus 71 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~ 133 (181)
+.+|.......++.+|++++|+|+++.-.. ....++... .. .++|+++++||+|+...
T Consensus 89 ~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~-~~---~~iPiiv~iNK~D~~~a 146 (526)
T PRK00741 89 HEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEVC-RL---RDTPIFTFINKLDRDGR 146 (526)
T ss_pred chhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHHH-Hh---cCCCEEEEEECCccccc
Confidence 999998888889999999999999864221 223333332 22 47999999999998653
No 236
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.77 E-value=1.3e-17 Score=126.02 Aligned_cols=147 Identities=17% Similarity=0.147 Sum_probs=94.8
Q ss_pred cEEEEEcCCCCChHHHHHhhhcCC--ccc----------------------------------ccCccceeEEEEEECCe
Q 030233 18 IKLLMVGLDASGKTTILYKMKLGE--IVT----------------------------------TTPTIGFNVEAVEYKNK 61 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~~~--~~~----------------------------------~~~~~~~~~~~~~~~~~ 61 (181)
++|+++|+.++|||||+.+++... ... ...|.......+...+.
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 589999999999999999996432 100 01123333444555778
Q ss_pred EEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HHHH
Q 030233 62 SFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMP--TAEV 139 (181)
Q Consensus 62 ~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~~~ 139 (181)
.+.++||||+++|.......+..+|++++|+|+...-. ....+.+..+... ...++++++||+|+.+... .+++
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~-~qt~~~~~~~~~~---~~~~iivviNK~D~~~~~~~~~~~i 156 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVL-EQTRRHSYIASLL---GIRHVVLAVNKMDLVDYDEEVFENI 156 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCc-cccHHHHHHHHHc---CCCcEEEEEEecccccchHHHHHHH
Confidence 99999999999998777778889999999999975321 1111112211111 2346899999999865221 1122
Q ss_pred HhhhCc--cccCCccEEEEEeeccCCCCHHH
Q 030233 140 ADKLEL--YSLGQRRWSIQSCSAISGQGLYE 168 (181)
Q Consensus 140 ~~~~~~--~~~~~~~~~~~~~Sa~~~~~i~~ 168 (181)
.+.+.. ......+.+++++||.+|+|+++
T Consensus 157 ~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 157 KKDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred HHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 222210 11122356799999999999985
No 237
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.77 E-value=1.8e-17 Score=118.74 Aligned_cols=109 Identities=18% Similarity=0.146 Sum_probs=80.4
Q ss_pred EEEEEcCCCCChHHHHHhhhcCC--cc-------------------cccCccceeEEEEEECCeEEEEEEcCCChhhHHH
Q 030233 19 KLLMVGLDASGKTTILYKMKLGE--IV-------------------TTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRAL 77 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~~~--~~-------------------~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~ 77 (181)
+|+++|++++|||||+++++... .. ....|+......+.+.+..+.++||||+.++...
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~ 80 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE 80 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence 58999999999999999996421 10 1122333444556778999999999999999888
Q ss_pred HHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 030233 78 WRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPN 132 (181)
Q Consensus 78 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~ 132 (181)
+...++.+|++++|+|+.+...- .....+..+ .. .++|+++++||+|+.+
T Consensus 81 ~~~~l~~aD~ailVVDa~~g~~~-~t~~~~~~~-~~---~~~p~ivviNK~D~~~ 130 (270)
T cd01886 81 VERSLRVLDGAVAVFDAVAGVEP-QTETVWRQA-DR---YNVPRIAFVNKMDRTG 130 (270)
T ss_pred HHHHHHHcCEEEEEEECCCCCCH-HHHHHHHHH-HH---cCCCEEEEEECCCCCC
Confidence 99999999999999999764321 122333333 22 4689999999999875
No 238
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.77 E-value=2e-17 Score=126.02 Aligned_cols=148 Identities=16% Similarity=0.153 Sum_probs=99.4
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhcCC--cc--------------------------------cccCccceeEEEEEECC
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKLGE--IV--------------------------------TTTPTIGFNVEAVEYKN 60 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~~~--~~--------------------------------~~~~~~~~~~~~~~~~~ 60 (181)
+..++++++|+.++|||||+-+++... .. ....|+......+...+
T Consensus 5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~ 84 (447)
T PLN00043 5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTK 84 (447)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCC
Confidence 457889999999999999999886421 00 01123334444455578
Q ss_pred eEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCCcccHH-------HHHHHHHHHHcCCCCCCC-eEEEEEeCCCCCC
Q 030233 61 KSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERIS-------EARNELHQILSDNELSNA-ALLVFANKQDLPN 132 (181)
Q Consensus 61 ~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~-------~~~~~~~~~~~~~~~~~~-piilv~nK~D~~~ 132 (181)
..+.++|+||+++|.......+..+|++|+|+|+.+. .|+ ...+.+... .. .++ ++|+++||+|+..
T Consensus 85 ~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~~-~~---~gi~~iIV~vNKmD~~~ 159 (447)
T PLN00043 85 YYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALLA-FT---LGVKQMICCCNKMDATT 159 (447)
T ss_pred EEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHHH-HH---cCCCcEEEEEEcccCCc
Confidence 8999999999999999999999999999999999852 222 233333322 22 245 5788999999762
Q ss_pred C-CC-------HHHHHhhhCccccCCccEEEEEeeccCCCCHH
Q 030233 133 V-MP-------TAEVADKLELYSLGQRRWSIQSCSAISGQGLY 167 (181)
Q Consensus 133 ~-~~-------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (181)
. .+ .+++...+....+...+++|+++||.+|+|+.
T Consensus 160 ~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~ 202 (447)
T PLN00043 160 PKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMI 202 (447)
T ss_pred hhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEecccccccc
Confidence 1 11 22233332222222335789999999999985
No 239
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.77 E-value=1.3e-17 Score=117.92 Aligned_cols=148 Identities=28% Similarity=0.388 Sum_probs=104.6
Q ss_pred cEEEEEcCCCCChHHHHHhhhcCC-------cccccCccceeEEEEEECCe-EEEEEEcCCChhh----HH---HHHhhc
Q 030233 18 IKLLMVGLDASGKTTILYKMKLGE-------IVTTTPTIGFNVEAVEYKNK-SFCVWDVGGQNKI----RA---LWRHYF 82 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~-~~~i~d~~g~~~~----~~---~~~~~~ 82 (181)
..+.++|-|++|||||++.+.... |++..|.+| ++.+++. ++.+-|.||--+- +. ....-+
T Consensus 197 advGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG----~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHi 272 (366)
T KOG1489|consen 197 ADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIG----TVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHI 272 (366)
T ss_pred cccceecCCCCcHHHHHHHhhccCCcccccceeeeccccc----eeeccccceeEeccCccccccccccCcccHHHHHHH
Confidence 368999999999999999998765 344455555 4556554 4999999983221 11 233345
Q ss_pred cCCCEEEEEEECCCc---ccHHHHHHHHHHHHc-CCCCCCCeEEEEEeCCCCCCCCCH--HHHHhhhCccccCCccEEEE
Q 030233 83 RDTLGLTFVVDSSDR---ERISEARNELHQILS-DNELSNAALLVFANKQDLPNVMPT--AEVADKLELYSLGQRRWSIQ 156 (181)
Q Consensus 83 ~~~d~ii~v~d~~~~---~s~~~~~~~~~~~~~-~~~~~~~piilv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 156 (181)
+.+..++||+|++.+ ..++.+...+.++-. .....+.|.++|+||+|+++.+.. +++.+.+. +-.++
T Consensus 273 ER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~~~l~~L~~~lq-------~~~V~ 345 (366)
T KOG1489|consen 273 ERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEKNLLSSLAKRLQ-------NPHVV 345 (366)
T ss_pred HhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHHHHHHHHHHHcC-------CCcEE
Confidence 578999999999987 667777665555532 345568999999999998642222 33333332 22699
Q ss_pred EeeccCCCCHHHHHHHHHhh
Q 030233 157 SCSAISGQGLYEGLDWLSNN 176 (181)
Q Consensus 157 ~~Sa~~~~~i~~l~~~i~~~ 176 (181)
++||+.++++.++++.+.+.
T Consensus 346 pvsA~~~egl~~ll~~lr~~ 365 (366)
T KOG1489|consen 346 PVSAKSGEGLEELLNGLREL 365 (366)
T ss_pred EeeeccccchHHHHHHHhhc
Confidence 99999999999999887653
No 240
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.77 E-value=7.8e-18 Score=129.18 Aligned_cols=151 Identities=16% Similarity=0.135 Sum_probs=97.1
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhcCC--ccc------------c----------------------cCccceeEEEEEE
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKLGE--IVT------------T----------------------TPTIGFNVEAVEY 58 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~~~--~~~------------~----------------------~~~~~~~~~~~~~ 58 (181)
+..++|+++|++++|||||+.+++... ... . ..|+......+..
T Consensus 25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~ 104 (474)
T PRK05124 25 KSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFST 104 (474)
T ss_pred cCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEecc
Confidence 567999999999999999999997543 110 0 1122333334455
Q ss_pred CCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--H
Q 030233 59 KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMP--T 136 (181)
Q Consensus 59 ~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~ 136 (181)
.+..+.++||||+++|.......+..+|++++|+|+...-.-+ ....+. +.... ...|+|+++||+|+.+... .
T Consensus 105 ~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~q-t~~~~~-l~~~l--g~~~iIvvvNKiD~~~~~~~~~ 180 (474)
T PRK05124 105 EKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQ-TRRHSF-IATLL--GIKHLVVAVNKMDLVDYSEEVF 180 (474)
T ss_pred CCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCcccc-chHHHH-HHHHh--CCCceEEEEEeeccccchhHHH
Confidence 7789999999999998777666778999999999997532111 111111 11111 1247899999999874221 2
Q ss_pred HHHHhhhCc--cccC-CccEEEEEeeccCCCCHHHH
Q 030233 137 AEVADKLEL--YSLG-QRRWSIQSCSAISGQGLYEG 169 (181)
Q Consensus 137 ~~~~~~~~~--~~~~-~~~~~~~~~Sa~~~~~i~~l 169 (181)
+++...+.. .... ....+++++||++|+|++++
T Consensus 181 ~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 181 ERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred HHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 222222211 0011 23568999999999999764
No 241
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.77 E-value=1.2e-17 Score=128.92 Aligned_cols=149 Identities=19% Similarity=0.186 Sum_probs=103.0
Q ss_pred CccEEEEEcCCCCChHHHHHhhhcCCc-ccc--cCccceeEEEEEECCeEEEEEEcCCCh------hhHHHHHhhc--cC
Q 030233 16 CRIKLLMVGLDASGKTTILYKMKLGEI-VTT--TPTIGFNVEAVEYKNKSFCVWDVGGQN------KIRALWRHYF--RD 84 (181)
Q Consensus 16 ~~~~i~~~G~~~~GKssl~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~i~d~~g~~------~~~~~~~~~~--~~ 84 (181)
+..+++++|+||+|||||+|+++|... ... .-|..-....+...+..+++.|.||-- .-+....+++ ..
T Consensus 2 ~~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~ 81 (653)
T COG0370 2 KKLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGK 81 (653)
T ss_pred CcceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcCC
Confidence 456799999999999999999998652 111 223333344566688889999999921 1122333333 35
Q ss_pred CCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC----CCHHHHHhhhCccccCCccEEEEEeec
Q 030233 85 TLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV----MPTAEVADKLELYSLGQRRWSIQSCSA 160 (181)
Q Consensus 85 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (181)
.|+++.|+|++|.+.--. .-.++++ -+.|+++++|++|..+. .+.+.+.+.+ +++++++||
T Consensus 82 ~D~ivnVvDAtnLeRnLy---ltlQLlE----~g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~L--------GvPVv~tvA 146 (653)
T COG0370 82 PDLIVNVVDATNLERNLY---LTLQLLE----LGIPMILALNMIDEAKKRGIRIDIEKLSKLL--------GVPVVPTVA 146 (653)
T ss_pred CCEEEEEcccchHHHHHH---HHHHHHH----cCCCeEEEeccHhhHHhcCCcccHHHHHHHh--------CCCEEEEEe
Confidence 799999999987533111 1222223 37899999999998653 3444455444 457999999
Q ss_pred cCCCCHHHHHHHHHhhhhc
Q 030233 161 ISGQGLYEGLDWLSNNISV 179 (181)
Q Consensus 161 ~~~~~i~~l~~~i~~~~~~ 179 (181)
++|+|++++.+.+.+....
T Consensus 147 ~~g~G~~~l~~~i~~~~~~ 165 (653)
T COG0370 147 KRGEGLEELKRAIIELAES 165 (653)
T ss_pred ecCCCHHHHHHHHHHhccc
Confidence 9999999999999875543
No 242
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=4.7e-17 Score=109.01 Aligned_cols=161 Identities=24% Similarity=0.378 Sum_probs=121.8
Q ss_pred CccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEECCeEEEEEEcCCChhhHHHHHhhcc---CCCEEEEEE
Q 030233 16 CRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFR---DTLGLTFVV 92 (181)
Q Consensus 16 ~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~---~~d~ii~v~ 92 (181)
.+-.|+++|+.+||||+|+-++..+....+.+.+..+...+.+....++++|.|||.+.+.-...++. .+-++++|+
T Consensus 37 ~~~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSiepn~a~~r~gs~~~~LVD~PGH~rlR~kl~e~~~~~~~akaiVFVV 116 (238)
T KOG0090|consen 37 KQNAVLLVGLSDSGKTSLFTQLITGSHRGTVTSIEPNEATYRLGSENVTLVDLPGHSRLRRKLLEYLKHNYSAKAIVFVV 116 (238)
T ss_pred cCCcEEEEecCCCCceeeeeehhcCCccCeeeeeccceeeEeecCcceEEEeCCCcHHHHHHHHHHccccccceeEEEEE
Confidence 34679999999999999999999888777776666777777777778999999999999887777777 688999999
Q ss_pred ECCC-cccHHHHHHHHHHHHcCC--CCCCCeEEEEEeCCCCCCCCCHHHHHhhhCcc-----------------------
Q 030233 93 DSSD-RERISEARNELHQILSDN--ELSNAALLVFANKQDLPNVMPTAEVADKLELY----------------------- 146 (181)
Q Consensus 93 d~~~-~~s~~~~~~~~~~~~~~~--~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~----------------------- 146 (181)
|... ........+++-.++... ....+|++++.||.|+.-..+.+.++..++.+
T Consensus 117 DSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~~~~~ 196 (238)
T KOG0090|consen 117 DSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDIAKDF 196 (238)
T ss_pred eccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhccccccccccc
Confidence 9853 334555566665555443 35679999999999997666655544433210
Q ss_pred ------------ccCCccEEEEEeeccCCCCHHHHHHHHHhhh
Q 030233 147 ------------SLGQRRWSIQSCSAISGQGLYEGLDWLSNNI 177 (181)
Q Consensus 147 ------------~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~ 177 (181)
......+.|.++|++++ +++++-+|+.+.+
T Consensus 197 tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~l 238 (238)
T KOG0090|consen 197 TLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREAL 238 (238)
T ss_pred cccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHhC
Confidence 00114677999999998 9999999998764
No 243
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.76 E-value=1.9e-17 Score=124.45 Aligned_cols=161 Identities=20% Similarity=0.188 Sum_probs=115.2
Q ss_pred CCCCcc-EEEEEcCCCCChHHHHHhhhcCC--cc----------------cccCccceeEEEEEECC---eEEEEEEcCC
Q 030233 13 FPQCRI-KLLMVGLDASGKTTILYKMKLGE--IV----------------TTTPTIGFNVEAVEYKN---KSFCVWDVGG 70 (181)
Q Consensus 13 ~~~~~~-~i~~~G~~~~GKssl~~~~~~~~--~~----------------~~~~~~~~~~~~~~~~~---~~~~i~d~~g 70 (181)
.|..++ ++.++-+...|||||..+++... .. +...|+-.....+.+.+ ..+.++||||
T Consensus 55 ~P~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPG 134 (650)
T KOG0462|consen 55 DPVENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPG 134 (650)
T ss_pred CchhhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCC
Confidence 344445 58999999999999999997532 11 11233333333445544 8999999999
Q ss_pred ChhhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCC
Q 030233 71 QNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQ 150 (181)
Q Consensus 71 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~ 150 (181)
|.+|.......+..|+++++|+|++..-.-+.....+.. ++ .+..+|.|+||+|++.....+......... ..
T Consensus 135 HvDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lA-fe----~~L~iIpVlNKIDlp~adpe~V~~q~~~lF--~~ 207 (650)
T KOG0462|consen 135 HVDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLA-FE----AGLAIIPVLNKIDLPSADPERVENQLFELF--DI 207 (650)
T ss_pred cccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHH-HH----cCCeEEEeeeccCCCCCCHHHHHHHHHHHh--cC
Confidence 999999988899999999999999854333333333333 33 378899999999998754433333332222 44
Q ss_pred ccEEEEEeeccCCCCHHHHHHHHHhhhhcc
Q 030233 151 RRWSIQSCSAISGQGLYEGLDWLSNNISVK 180 (181)
Q Consensus 151 ~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~ 180 (181)
...+++.+||++|.|++++++.+.+.+...
T Consensus 208 ~~~~~i~vSAK~G~~v~~lL~AII~rVPpP 237 (650)
T KOG0462|consen 208 PPAEVIYVSAKTGLNVEELLEAIIRRVPPP 237 (650)
T ss_pred CccceEEEEeccCccHHHHHHHHHhhCCCC
Confidence 555899999999999999999999988754
No 244
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.76 E-value=1.3e-17 Score=119.91 Aligned_cols=110 Identities=20% Similarity=0.249 Sum_probs=81.0
Q ss_pred EEEEEcCCCCChHHHHHhhhcCC--ccc-------------------ccCccceeEEEEEECCeEEEEEEcCCChhhHHH
Q 030233 19 KLLMVGLDASGKTTILYKMKLGE--IVT-------------------TTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRAL 77 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~~~--~~~-------------------~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~ 77 (181)
+|+++|++|+|||||+++++... ... ...+.......+.+.+..+.+|||||+.++...
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~ 80 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE 80 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence 58999999999999999997532 100 112233344456678899999999999988888
Q ss_pred HHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 030233 78 WRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV 133 (181)
Q Consensus 78 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~ 133 (181)
+..++..+|++++|+|+++....... ..+..+ .. .++|.++++||+|....
T Consensus 81 ~~~~l~~aD~~i~Vvd~~~g~~~~~~-~~~~~~-~~---~~~p~iivvNK~D~~~~ 131 (268)
T cd04170 81 TRAALRAADAALVVVSAQSGVEVGTE-KLWEFA-DE---AGIPRIIFINKMDRERA 131 (268)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHH-HHHHHH-HH---cCCCEEEEEECCccCCC
Confidence 88899999999999999875443322 223322 22 36899999999998764
No 245
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.76 E-value=2.3e-17 Score=125.70 Aligned_cols=150 Identities=19% Similarity=0.167 Sum_probs=100.1
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhcCC--cc--------------------------------cccCccceeEEEEEECC
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKLGE--IV--------------------------------TTTPTIGFNVEAVEYKN 60 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~~~--~~--------------------------------~~~~~~~~~~~~~~~~~ 60 (181)
...++|+++|+.++|||||+.+++... .. ....|.......+.+.+
T Consensus 5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~ 84 (446)
T PTZ00141 5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (446)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCC
Confidence 457899999999999999999997521 00 01123334444456678
Q ss_pred eEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCCcc---cH---HHHHHHHHHHHcCCCCCCCe-EEEEEeCCCCCC-
Q 030233 61 KSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRE---RI---SEARNELHQILSDNELSNAA-LLVFANKQDLPN- 132 (181)
Q Consensus 61 ~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~---~~~~~~~~~~~~~~~~~~~p-iilv~nK~D~~~- 132 (181)
..+.++||||+++|.......+..+|++++|+|+.... .+ ....+.+..+.. .++| +|+++||+|...
T Consensus 85 ~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~----~gi~~iiv~vNKmD~~~~ 160 (446)
T PTZ00141 85 YYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFT----LGVKQMIVCINKMDDKTV 160 (446)
T ss_pred eEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHH----cCCCeEEEEEEccccccc
Confidence 89999999999999988888889999999999997531 11 122233333222 2554 789999999532
Q ss_pred ---CCCHHHHHhhh----CccccCCccEEEEEeeccCCCCHHH
Q 030233 133 ---VMPTAEVADKL----ELYSLGQRRWSIQSCSAISGQGLYE 168 (181)
Q Consensus 133 ---~~~~~~~~~~~----~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (181)
+...+++.+.+ ........+++++++||.+|+|+.+
T Consensus 161 ~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 161 NYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred hhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 12223333322 2222223468999999999999964
No 246
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.76 E-value=3.1e-17 Score=124.83 Aligned_cols=162 Identities=14% Similarity=0.161 Sum_probs=105.7
Q ss_pred CCCccEEEEEcCCCCChHHHHHhhhcCCcccc------cC--ccceeEEEE-------------EE--------------
Q 030233 14 PQCRIKLLMVGLDASGKTTILYKMKLGEIVTT------TP--TIGFNVEAV-------------EY-------------- 58 (181)
Q Consensus 14 ~~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~------~~--~~~~~~~~~-------------~~-------------- 58 (181)
.+..++|+++|+...|||||+..|.+...... .. .+|+..... .+
T Consensus 31 ~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (460)
T PTZ00327 31 RQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCG 110 (460)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccc
Confidence 35578999999999999999999997542211 11 122221100 00
Q ss_pred ----CCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC
Q 030233 59 ----KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVM 134 (181)
Q Consensus 59 ----~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~ 134 (181)
....+.++|+||+++|.......+..+|++++|+|+.+........+.+..+ ... .-.++|+|+||+|+.+..
T Consensus 111 ~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~-~~l--gi~~iIVvlNKiDlv~~~ 187 (460)
T PTZ00327 111 HKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAV-EIM--KLKHIIILQNKIDLVKEA 187 (460)
T ss_pred ccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHH-HHc--CCCcEEEEEecccccCHH
Confidence 1247899999999999888888888999999999998631112222322222 211 235789999999987533
Q ss_pred CHHHHHhhhCccc--cCCccEEEEEeeccCCCCHHHHHHHHHhhhh
Q 030233 135 PTAEVADKLELYS--LGQRRWSIQSCSAISGQGLYEGLDWLSNNIS 178 (181)
Q Consensus 135 ~~~~~~~~~~~~~--~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~ 178 (181)
..++....+.... ......+++++||++|+|+++|++.|.+.+.
T Consensus 188 ~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp 233 (460)
T PTZ00327 188 QAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIP 233 (460)
T ss_pred HHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCC
Confidence 2222222221100 0124668999999999999999999987654
No 247
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.75 E-value=3.6e-17 Score=130.00 Aligned_cols=152 Identities=16% Similarity=0.140 Sum_probs=97.2
Q ss_pred CCCCccEEEEEcCCCCChHHHHHhhhcCC--ccc------------c----------------------cCccceeEEEE
Q 030233 13 FPQCRIKLLMVGLDASGKTTILYKMKLGE--IVT------------T----------------------TPTIGFNVEAV 56 (181)
Q Consensus 13 ~~~~~~~i~~~G~~~~GKssl~~~~~~~~--~~~------------~----------------------~~~~~~~~~~~ 56 (181)
.....++|+++|++++|||||+++++... ... . ..|.......+
T Consensus 20 ~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~ 99 (632)
T PRK05506 20 ERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYF 99 (632)
T ss_pred cCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEE
Confidence 44567899999999999999999998643 110 0 11222223344
Q ss_pred EECCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC-
Q 030233 57 EYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMP- 135 (181)
Q Consensus 57 ~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~- 135 (181)
...+..+.++||||++++.......+..+|++++|+|+..... ....+.+..+... ...++++++||+|+.+...
T Consensus 100 ~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~-~~t~e~~~~~~~~---~~~~iivvvNK~D~~~~~~~ 175 (632)
T PRK05506 100 ATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVL-TQTRRHSFIASLL---GIRHVVLAVNKMDLVDYDQE 175 (632)
T ss_pred ccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCcc-ccCHHHHHHHHHh---CCCeEEEEEEecccccchhH
Confidence 5577889999999999887766677889999999999975321 1111111111111 2367899999999864211
Q ss_pred -HHHHHhhhCc--cccCCccEEEEEeeccCCCCHHH
Q 030233 136 -TAEVADKLEL--YSLGQRRWSIQSCSAISGQGLYE 168 (181)
Q Consensus 136 -~~~~~~~~~~--~~~~~~~~~~~~~Sa~~~~~i~~ 168 (181)
.+++...+.. ........+++++||++|+|+++
T Consensus 176 ~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 176 VFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred HHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 1222222210 11122345799999999999873
No 248
>PLN03127 Elongation factor Tu; Provisional
Probab=99.75 E-value=8.2e-17 Score=122.59 Aligned_cols=160 Identities=18% Similarity=0.185 Sum_probs=103.0
Q ss_pred CCCccEEEEEcCCCCChHHHHHhhhcC------C--cc--c---------ccCccceeEEEEEECCeEEEEEEcCCChhh
Q 030233 14 PQCRIKLLMVGLDASGKTTILYKMKLG------E--IV--T---------TTPTIGFNVEAVEYKNKSFCVWDVGGQNKI 74 (181)
Q Consensus 14 ~~~~~~i~~~G~~~~GKssl~~~~~~~------~--~~--~---------~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~ 74 (181)
.+..++|+++|+.++|||||++++.+. . .. . ...|.......+...+.++.+.||||+++|
T Consensus 58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f 137 (447)
T PLN03127 58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADY 137 (447)
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccch
Confidence 456789999999999999999999632 1 00 0 122333333344446778999999999998
Q ss_pred HHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCe-EEEEEeCCCCCCCCCH-HHHH----hhhCcccc
Q 030233 75 RALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAA-LLVFANKQDLPNVMPT-AEVA----DKLELYSL 148 (181)
Q Consensus 75 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~D~~~~~~~-~~~~----~~~~~~~~ 148 (181)
.......+..+|++++|+|+.+.-. ....+.+..+ .. .++| +|+++||+|+.+.... +.+. +.+.....
T Consensus 138 ~~~~~~g~~~aD~allVVda~~g~~-~qt~e~l~~~-~~---~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~ 212 (447)
T PLN03127 138 VKNMITGAAQMDGGILVVSAPDGPM-PQTKEHILLA-RQ---VGVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYKF 212 (447)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCc-hhHHHHHHHH-HH---cCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCC
Confidence 8777777778999999999875321 2222333333 22 3577 5789999998752221 1122 21111111
Q ss_pred CCccEEEEEeecc---CCCC-------HHHHHHHHHhhhh
Q 030233 149 GQRRWSIQSCSAI---SGQG-------LYEGLDWLSNNIS 178 (181)
Q Consensus 149 ~~~~~~~~~~Sa~---~~~~-------i~~l~~~i~~~~~ 178 (181)
....++++++||. +|.| +.++++.+.+.+.
T Consensus 213 ~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp 252 (447)
T PLN03127 213 PGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIP 252 (447)
T ss_pred CCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCC
Confidence 2235788888876 5555 7888888887653
No 249
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.74 E-value=2.4e-16 Score=126.34 Aligned_cols=112 Identities=18% Similarity=0.115 Sum_probs=82.7
Q ss_pred CccEEEEEcCCCCChHHHHHhhhcCC--cc-------------------cccCccceeEEEEEECCeEEEEEEcCCChhh
Q 030233 16 CRIKLLMVGLDASGKTTILYKMKLGE--IV-------------------TTTPTIGFNVEAVEYKNKSFCVWDVGGQNKI 74 (181)
Q Consensus 16 ~~~~i~~~G~~~~GKssl~~~~~~~~--~~-------------------~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~ 74 (181)
+--+|+++|++++|||||+++++... .. ....|.......+.+.+..+.+|||||+.++
T Consensus 9 ~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~~ 88 (689)
T TIGR00484 9 RFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVDF 88 (689)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcch
Confidence 33479999999999999999997422 10 0122333445567778999999999999998
Q ss_pred HHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 030233 75 RALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPN 132 (181)
Q Consensus 75 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~ 132 (181)
...+...++.+|++++|+|+.+....+.. ..+..+ .. .++|+++++||+|+..
T Consensus 89 ~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~-~~---~~~p~ivviNK~D~~~ 141 (689)
T TIGR00484 89 TVEVERSLRVLDGAVAVLDAVGGVQPQSE-TVWRQA-NR---YEVPRIAFVNKMDKTG 141 (689)
T ss_pred hHHHHHHHHHhCEEEEEEeCCCCCChhHH-HHHHHH-HH---cCCCEEEEEECCCCCC
Confidence 88888999999999999999865433322 233332 22 3689999999999875
No 250
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.74 E-value=2e-16 Score=119.19 Aligned_cols=156 Identities=21% Similarity=0.186 Sum_probs=108.9
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhcCCcccc---cCccceeEEEEEE---CCeEEEEEEcCCChhhHHHHHhhccCCCEE
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKLGEIVTT---TPTIGFNVEAVEY---KNKSFCVWDVGGQNKIRALWRHYFRDTLGL 88 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~---~~~~~~~~~~~~~---~~~~~~i~d~~g~~~~~~~~~~~~~~~d~i 88 (181)
.+.+-|+++|+...|||||+..+-+...... ..|--+--+.+.. ....+.+.|||||+.|..++..-..-+|.+
T Consensus 3 ~R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIa 82 (509)
T COG0532 3 LRPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIA 82 (509)
T ss_pred CCCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEE
Confidence 3567899999999999999999976553321 1222222333444 346899999999999999999888899999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCcccc----CCccEEEEEeeccCCC
Q 030233 89 TFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSL----GQRRWSIQSCSAISGQ 164 (181)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~ 164 (181)
++|+|+++.- ..+..+-+.... ..+.|+++++||+|.++.. +..+...+..... -.....++++||++|+
T Consensus 83 ILVVa~dDGv-~pQTiEAI~hak----~a~vP~iVAiNKiDk~~~n-p~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~ 156 (509)
T COG0532 83 ILVVAADDGV-MPQTIEAINHAK----AAGVPIVVAINKIDKPEAN-PDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGE 156 (509)
T ss_pred EEEEEccCCc-chhHHHHHHHHH----HCCCCEEEEEecccCCCCC-HHHHHHHHHHcCCCHhhcCCceEEEEeeccCCC
Confidence 9999998631 112222222222 2589999999999998533 3333333322221 1235789999999999
Q ss_pred CHHHHHHHHHhh
Q 030233 165 GLYEGLDWLSNN 176 (181)
Q Consensus 165 ~i~~l~~~i~~~ 176 (181)
|+++|++.+.-.
T Consensus 157 Gi~eLL~~ill~ 168 (509)
T COG0532 157 GIDELLELILLL 168 (509)
T ss_pred CHHHHHHHHHHH
Confidence 999999987654
No 251
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.74 E-value=2.5e-16 Score=122.04 Aligned_cols=111 Identities=21% Similarity=0.250 Sum_probs=80.1
Q ss_pred CccEEEEEcCCCCChHHHHHhhhc--CCccc-----------------------ccCccceeEEEEEECCeEEEEEEcCC
Q 030233 16 CRIKLLMVGLDASGKTTILYKMKL--GEIVT-----------------------TTPTIGFNVEAVEYKNKSFCVWDVGG 70 (181)
Q Consensus 16 ~~~~i~~~G~~~~GKssl~~~~~~--~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~i~d~~g 70 (181)
+.-+|+++|++++|||||+++++. +.... ...++......+.+.+..+.+|||||
T Consensus 10 ~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTPG 89 (527)
T TIGR00503 10 KRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTPG 89 (527)
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECCC
Confidence 456899999999999999999853 11110 01122233345667889999999999
Q ss_pred ChhhHHHHHhhccCCCEEEEEEECCCcccHHH-HHHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 030233 71 QNKIRALWRHYFRDTLGLTFVVDSSDRERISE-ARNELHQILSDNELSNAALLVFANKQDLPN 132 (181)
Q Consensus 71 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~piilv~nK~D~~~ 132 (181)
+.+|.......++.+|++|+|+|+.+. +.. ...++. .... .++|+++++||+|+..
T Consensus 90 ~~df~~~~~~~l~~aD~aIlVvDa~~g--v~~~t~~l~~-~~~~---~~~PiivviNKiD~~~ 146 (527)
T TIGR00503 90 HEDFSEDTYRTLTAVDNCLMVIDAAKG--VETRTRKLME-VTRL---RDTPIFTFMNKLDRDI 146 (527)
T ss_pred hhhHHHHHHHHHHhCCEEEEEEECCCC--CCHHHHHHHH-HHHh---cCCCEEEEEECccccC
Confidence 999888777888999999999999763 222 233333 3333 4789999999999854
No 252
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.74 E-value=1.6e-16 Score=113.15 Aligned_cols=155 Identities=19% Similarity=0.144 Sum_probs=110.6
Q ss_pred CccEEEEEcCCCCChHHHHHhhhcCCc--ccc-cCccceeEEEEEECCeEEEEEEcCCCh--------hhHHHHHhhcc-
Q 030233 16 CRIKLLMVGLDASGKTTILYKMKLGEI--VTT-TPTIGFNVEAVEYKNKSFCVWDVGGQN--------KIRALWRHYFR- 83 (181)
Q Consensus 16 ~~~~i~~~G~~~~GKssl~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~i~d~~g~~--------~~~~~~~~~~~- 83 (181)
..+.|++.|.||||||||++.+.+.+. ..| ..|.++....+......++++||||-- .-..+...+++
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~h 246 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAILALRH 246 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHHHHHHHH
Confidence 457899999999999999999998773 333 345677888888899999999999921 11122233333
Q ss_pred CCCEEEEEEECCCcc--cHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeecc
Q 030233 84 DTLGLTFVVDSSDRE--RISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAI 161 (181)
Q Consensus 84 ~~d~ii~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (181)
-.++++|++|.+... +++.....+..+... -+.|+++|.||+|.......+++...+.. ........+++.
T Consensus 247 l~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~---f~~p~v~V~nK~D~~~~e~~~~~~~~~~~----~~~~~~~~~~~~ 319 (346)
T COG1084 247 LAGVILFLFDPSETCGYSLEEQISLLEEIKEL---FKAPIVVVINKIDIADEEKLEEIEASVLE----EGGEEPLKISAT 319 (346)
T ss_pred hcCeEEEEEcCccccCCCHHHHHHHHHHHHHh---cCCCeEEEEecccccchhHHHHHHHHHHh----hccccccceeee
Confidence 358899999998654 455556667776554 34899999999998875555555544322 223346788889
Q ss_pred CCCCHHHHHHHHHhhh
Q 030233 162 SGQGLYEGLDWLSNNI 177 (181)
Q Consensus 162 ~~~~i~~l~~~i~~~~ 177 (181)
.+.+++.+-+.+....
T Consensus 320 ~~~~~d~~~~~v~~~a 335 (346)
T COG1084 320 KGCGLDKLREEVRKTA 335 (346)
T ss_pred ehhhHHHHHHHHHHHh
Confidence 9999998887776653
No 253
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.73 E-value=2.1e-16 Score=119.02 Aligned_cols=158 Identities=18% Similarity=0.154 Sum_probs=112.4
Q ss_pred CCCCccEEEEEcCCCCChHHHHHhhhcCCccc---ccCccceeEEEEEE-CCeEEEEEEcCCChhhHHHHHhhccCCCEE
Q 030233 13 FPQCRIKLLMVGLDASGKTTILYKMKLGEIVT---TTPTIGFNVEAVEY-KNKSFCVWDVGGQNKIRALWRHYFRDTLGL 88 (181)
Q Consensus 13 ~~~~~~~i~~~G~~~~GKssl~~~~~~~~~~~---~~~~~~~~~~~~~~-~~~~~~i~d~~g~~~~~~~~~~~~~~~d~i 88 (181)
...+++-|-++|+...|||||+..|-+..... ...|-.+--..+.. .+..+++.|||||..|.+++..-..-+|.+
T Consensus 149 l~~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~G~~iTFLDTPGHaAF~aMRaRGA~vtDIv 228 (683)
T KOG1145|consen 149 LEPRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPSGKSITFLDTPGHAAFSAMRARGANVTDIV 228 (683)
T ss_pred cCCCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCCCCEEEEecCCcHHHHHHHHhccCccccEE
Confidence 34577889999999999999999997655322 12232233333333 668899999999999999999998899999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCcccc----CCccEEEEEeeccCCC
Q 030233 89 TFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSL----GQRRWSIQSCSAISGQ 164 (181)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~ 164 (181)
++|+.+.|. ...+..+-+.. ....+.|+|+++||+|.+... .+.+.+.+..... -..+..++++||++|+
T Consensus 229 VLVVAadDG-VmpQT~EaIkh----Ak~A~VpiVvAinKiDkp~a~-pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~ 302 (683)
T KOG1145|consen 229 VLVVAADDG-VMPQTLEAIKH----AKSANVPIVVAINKIDKPGAN-PEKVKRELLSQGIVVEDLGGDVQVIPISALTGE 302 (683)
T ss_pred EEEEEccCC-ccHhHHHHHHH----HHhcCCCEEEEEeccCCCCCC-HHHHHHHHHHcCccHHHcCCceeEEEeecccCC
Confidence 999998753 12222232332 223589999999999987544 4444444322211 2257789999999999
Q ss_pred CHHHHHHHHHhh
Q 030233 165 GLYEGLDWLSNN 176 (181)
Q Consensus 165 ~i~~l~~~i~~~ 176 (181)
|++.|-+.+.-.
T Consensus 303 nl~~L~eaill~ 314 (683)
T KOG1145|consen 303 NLDLLEEAILLL 314 (683)
T ss_pred ChHHHHHHHHHH
Confidence 999999987654
No 254
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.73 E-value=3.6e-16 Score=98.72 Aligned_cols=103 Identities=20% Similarity=0.312 Sum_probs=70.2
Q ss_pred EEEEEcCCCCChHHHHHhhhcCCcccc----cCccceeEEEEEECCeEEEEEEcCCChh---------hHHHHHhhccCC
Q 030233 19 KLLMVGLDASGKTTILYKMKLGEIVTT----TPTIGFNVEAVEYKNKSFCVWDVGGQNK---------IRALWRHYFRDT 85 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~i~d~~g~~~---------~~~~~~~~~~~~ 85 (181)
+|+++|.+|+|||||+|++++...... ..|.......+.+.+..+.++||||-.. ........+..+
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 80 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQISKS 80 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTE
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHC
Confidence 689999999999999999998653222 2233334445667889999999999422 111233444789
Q ss_pred CEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeC
Q 030233 86 LGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANK 127 (181)
Q Consensus 86 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK 127 (181)
|++++|+|+.++.. +.....+..+ + .+.|+++|+||
T Consensus 81 d~ii~vv~~~~~~~-~~~~~~~~~l-~----~~~~~i~v~NK 116 (116)
T PF01926_consen 81 DLIIYVVDASNPIT-EDDKNILREL-K----NKKPIILVLNK 116 (116)
T ss_dssp SEEEEEEETTSHSH-HHHHHHHHHH-H----TTSEEEEEEES
T ss_pred CEEEEEEECCCCCC-HHHHHHHHHH-h----cCCCEEEEEcC
Confidence 99999999876321 2222333333 2 47999999998
No 255
>PRK12739 elongation factor G; Reviewed
Probab=99.72 E-value=4e-16 Score=125.05 Aligned_cols=114 Identities=18% Similarity=0.107 Sum_probs=83.9
Q ss_pred CCCccEEEEEcCCCCChHHHHHhhhcCC-----c----------------ccccCccceeEEEEEECCeEEEEEEcCCCh
Q 030233 14 PQCRIKLLMVGLDASGKTTILYKMKLGE-----I----------------VTTTPTIGFNVEAVEYKNKSFCVWDVGGQN 72 (181)
Q Consensus 14 ~~~~~~i~~~G~~~~GKssl~~~~~~~~-----~----------------~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~ 72 (181)
+.+..+|+++|++++|||||+++++... . .....|+......+.+.+..+.++||||+.
T Consensus 5 ~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~ 84 (691)
T PRK12739 5 LEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHV 84 (691)
T ss_pred ccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHH
Confidence 3455679999999999999999997421 0 011234444555677789999999999999
Q ss_pred hhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 030233 73 KIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPN 132 (181)
Q Consensus 73 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~ 132 (181)
++...+...++.+|++++|+|+.+.-.-+ ....+..+ .. .+.|+++++||+|+..
T Consensus 85 ~f~~e~~~al~~~D~~ilVvDa~~g~~~q-t~~i~~~~-~~---~~~p~iv~iNK~D~~~ 139 (691)
T PRK12739 85 DFTIEVERSLRVLDGAVAVFDAVSGVEPQ-SETVWRQA-DK---YGVPRIVFVNKMDRIG 139 (691)
T ss_pred HHHHHHHHHHHHhCeEEEEEeCCCCCCHH-HHHHHHHH-HH---cCCCEEEEEECCCCCC
Confidence 98888889999999999999997643222 12233333 22 3689999999999875
No 256
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.72 E-value=5.4e-17 Score=113.03 Aligned_cols=164 Identities=18% Similarity=0.261 Sum_probs=110.8
Q ss_pred hCCCCccEEEEEcCCCCChHHHHHhhhcCCcccc---cCc-cceeEEEEEECCeEEEEEEcCCChh-------hHHHHHh
Q 030233 12 FFPQCRIKLLMVGLDASGKTTILYKMKLGEIVTT---TPT-IGFNVEAVEYKNKSFCVWDVGGQNK-------IRALWRH 80 (181)
Q Consensus 12 ~~~~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~i~d~~g~~~-------~~~~~~~ 80 (181)
.....+++++++|..|+||||++|+++.+...+. ..+ ...+.....+....+.+||+||.++ +++....
T Consensus 34 l~~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~D~~~r~~~~d 113 (296)
T COG3596 34 LTEKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDKDAEHRQLYRD 113 (296)
T ss_pred hcccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccccceEEecCCCcccchhhhHHHHHHHHH
Confidence 3456789999999999999999999997653322 222 2233444556778999999999554 7777888
Q ss_pred hccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC---------CHHHHHhhhC-----cc
Q 030233 81 YFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVM---------PTAEVADKLE-----LY 146 (181)
Q Consensus 81 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~---------~~~~~~~~~~-----~~ 146 (181)
++...|.+++++++.+++--... ..+..+.... .+.++++++|++|..... ....+....+ ..
T Consensus 114 ~l~~~DLvL~l~~~~draL~~d~-~f~~dVi~~~--~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~ 190 (296)
T COG3596 114 YLPKLDLVLWLIKADDRALGTDE-DFLRDVIILG--LDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALG 190 (296)
T ss_pred HhhhccEEEEeccCCCccccCCH-HHHHHHHHhc--cCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHH
Confidence 88999999999999877422112 2233332221 248999999999976531 1111111111 01
Q ss_pred ccCCccEEEEEeeccCCCCHHHHHHHHHhhhh
Q 030233 147 SLGQRRWSIQSCSAISGQGLYEGLDWLSNNIS 178 (181)
Q Consensus 147 ~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~ 178 (181)
.....-.+++..|...+.|++++...+...+.
T Consensus 191 ~~~q~V~pV~~~~~r~~wgl~~l~~ali~~lp 222 (296)
T COG3596 191 RLFQEVKPVVAVSGRLPWGLKELVRALITALP 222 (296)
T ss_pred HHHhhcCCeEEeccccCccHHHHHHHHHHhCc
Confidence 11223447888889999999999999988765
No 257
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.72 E-value=2.2e-16 Score=112.13 Aligned_cols=151 Identities=21% Similarity=0.196 Sum_probs=102.9
Q ss_pred ccEEEEEcCCCCChHHHHHhhhcCC--ccccc-CccceeEEEEEECCeEEEEEEcCCChhh-------HHHHHhhccCCC
Q 030233 17 RIKLLMVGLDASGKTTILYKMKLGE--IVTTT-PTIGFNVEAVEYKNKSFCVWDVGGQNKI-------RALWRHYFRDTL 86 (181)
Q Consensus 17 ~~~i~~~G~~~~GKssl~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~i~d~~g~~~~-------~~~~~~~~~~~d 86 (181)
.-+++++|.|++|||||++.+.+.. ...+. .|....-..+.+.+.++++.|+||--.. ........+.||
T Consensus 63 da~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R~AD 142 (365)
T COG1163 63 DATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVARNAD 142 (365)
T ss_pred CeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecCceEEEEcCcccccCcccCCCCcceeeeeeccCC
Confidence 4689999999999999999998865 22222 2222333347889999999999972211 234556778999
Q ss_pred EEEEEEECCCccc-HHHHHHHHHHHH-c-CCCCC----------------------------------------------
Q 030233 87 GLTFVVDSSDRER-ISEARNELHQIL-S-DNELS---------------------------------------------- 117 (181)
Q Consensus 87 ~ii~v~d~~~~~s-~~~~~~~~~~~~-~-~~~~~---------------------------------------------- 117 (181)
.+++|+|+..... .+.+...++..= . ....+
T Consensus 143 lIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~Ir~ 222 (365)
T COG1163 143 LIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLIRE 222 (365)
T ss_pred EEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEEEec
Confidence 9999999986543 333333222210 0 00000
Q ss_pred ----------------CCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHHHHHHhhh
Q 030233 118 ----------------NAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNI 177 (181)
Q Consensus 118 ----------------~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~ 177 (181)
-+|.++|.||.|+......+.+.+.. .++.+||..+.|++++.+.|.+.+
T Consensus 223 dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~e~~~~l~~~~----------~~v~isa~~~~nld~L~e~i~~~L 288 (365)
T COG1163 223 DVTLDDLIDALEGNRVYKPALYVVNKIDLPGLEELERLARKP----------NSVPISAKKGINLDELKERIWDVL 288 (365)
T ss_pred CCcHHHHHHHHhhcceeeeeEEEEecccccCHHHHHHHHhcc----------ceEEEecccCCCHHHHHHHHHHhh
Confidence 12999999999988733333333322 589999999999999999998875
No 258
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.72 E-value=5e-16 Score=113.31 Aligned_cols=154 Identities=23% Similarity=0.263 Sum_probs=97.5
Q ss_pred EEEEcCCCCChHHHHHhhhcCCc-------ccccCccceeEEEE-------------------E-ECCeEEEEEEcCCC-
Q 030233 20 LLMVGLDASGKTTILYKMKLGEI-------VTTTPTIGFNVEAV-------------------E-YKNKSFCVWDVGGQ- 71 (181)
Q Consensus 20 i~~~G~~~~GKssl~~~~~~~~~-------~~~~~~~~~~~~~~-------------------~-~~~~~~~i~d~~g~- 71 (181)
|+++|.+++|||||+|++.+... .+..|+.|...... . .....+++||+||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 57999999999999999998762 23345555443211 0 13367999999996
Q ss_pred ---hhhHHHHHh---hccCCCEEEEEEECCCc-------------c---cHHHHH----HH-------------------
Q 030233 72 ---NKIRALWRH---YFRDTLGLTFVVDSSDR-------------E---RISEAR----NE------------------- 106 (181)
Q Consensus 72 ---~~~~~~~~~---~~~~~d~ii~v~d~~~~-------------~---s~~~~~----~~------------------- 106 (181)
+++..+... .++++|++++|+|+... + .++.+. .|
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~~~d~~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~~~~~~~~~~~~~~~ 160 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDASGGTDAEGNGVETGGHDPLEDIEFLENEIDMWIYGILEKNWEKIVRKADAE 160 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 444444333 58899999999999731 0 111111 10
Q ss_pred ---------------------HHHHHcC-C--------------------CCCCCeEEEEEeCCCCCCCCCHHHHHhhhC
Q 030233 107 ---------------------LHQILSD-N--------------------ELSNAALLVFANKQDLPNVMPTAEVADKLE 144 (181)
Q Consensus 107 ---------------------~~~~~~~-~--------------------~~~~~piilv~nK~D~~~~~~~~~~~~~~~ 144 (181)
+..+++. . .....|+|+++||.|+... ++..+.+.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~llt~KPvI~VlNK~Dl~~~---~~~~~~l~ 237 (318)
T cd01899 161 KTDIVEALSEQLSGFGVNEKDVIEALEELELPEDLSKWTDEDLLRLARALRKRSKPMVIAANKADIPDA---ENNISKLR 237 (318)
T ss_pred CccHHHHHHHHHhhccccHHHHHHHHHhCCCCCcccCCCHHHHHHHHHHHHhcCCcEEEEEEHHHccCh---HHHHHHHH
Confidence 0001100 0 1234699999999997532 22222221
Q ss_pred ccccCCccEEEEEeeccCCCCHHHHHH-HHHhhhhc
Q 030233 145 LYSLGQRRWSIQSCSAISGQGLYEGLD-WLSNNISV 179 (181)
Q Consensus 145 ~~~~~~~~~~~~~~Sa~~~~~i~~l~~-~i~~~~~~ 179 (181)
. ......++.+||+.+.+++++.+ .+.+.+.+
T Consensus 238 ~---~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe 270 (318)
T cd01899 238 L---KYPDEIVVPTSAEAELALRRAAKQGLIKYDPG 270 (318)
T ss_pred h---hCCCCeEEEEeCcccccHHHHHHhhHHHhCCC
Confidence 1 12244799999999999999998 69888754
No 259
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.71 E-value=2.5e-19 Score=117.13 Aligned_cols=157 Identities=18% Similarity=0.240 Sum_probs=122.9
Q ss_pred cEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEE--EEEE---CCeEEEEEEcCCChhhHHHHHhhccCCCEEEEE
Q 030233 18 IKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVE--AVEY---KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFV 91 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~--~~~~---~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v 91 (181)
++++|+|.-++|||+++.+++...+. .+..|+|.... ...+ .-.++++||.+|++++..+..-+++.+++..+|
T Consensus 26 ~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~~iV 105 (229)
T KOG4423|consen 26 FKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGAFIV 105 (229)
T ss_pred hhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcceEEE
Confidence 68999999999999999999987754 45677775433 3344 335789999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHcC---CCCCCCeEEEEEeCCCCCCCCCHH---HHHhhhCccccCCccEEEEEeeccCCCC
Q 030233 92 VDSSDRERISEARNELHQILSD---NELSNAALLVFANKQDLPNVMPTA---EVADKLELYSLGQRRWSIQSCSAISGQG 165 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~---~~~~~~piilv~nK~D~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (181)
||+++..+|+....|...+... ......|+++..||||.......+ .+..... .......+++|++.+.|
T Consensus 106 fdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~k----engf~gwtets~Kenkn 181 (229)
T KOG4423|consen 106 FDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKK----ENGFEGWTETSAKENKN 181 (229)
T ss_pred EEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHh----ccCccceeeeccccccC
Confidence 9999999999999999988654 333447899999999986533222 2333222 22333689999999999
Q ss_pred HHHHHHHHHhhhh
Q 030233 166 LYEGLDWLSNNIS 178 (181)
Q Consensus 166 i~~l~~~i~~~~~ 178 (181)
++|.-+.+.+++.
T Consensus 182 i~Ea~r~lVe~~l 194 (229)
T KOG4423|consen 182 IPEAQRELVEKIL 194 (229)
T ss_pred hhHHHHHHHHHHH
Confidence 9999999988764
No 260
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.71 E-value=3.5e-16 Score=116.47 Aligned_cols=163 Identities=20% Similarity=0.226 Sum_probs=110.0
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEE----EEECCeEEEEEEcCCChh--------h-HHHHHhh
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEA----VEYKNKSFCVWDVGGQNK--------I-RALWRHY 81 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~i~d~~g~~~--------~-~~~~~~~ 81 (181)
+..++|+++|+||+|||||+|.+.+.+..-.+|-.|++.+. ++..+..+.+.||+|-.+ . -......
T Consensus 266 q~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~ 345 (531)
T KOG1191|consen 266 QSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARKR 345 (531)
T ss_pred hcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHHH
Confidence 35689999999999999999999999987777877777664 556899999999999433 1 1124456
Q ss_pred ccCCCEEEEEEEC--CCcccHHHHHHHHHHHHcC-----CCCCCCeEEEEEeCCCCCCCCC-HHHHHhhhCccccCCccE
Q 030233 82 FRDTLGLTFVVDS--SDRERISEARNELHQILSD-----NELSNAALLVFANKQDLPNVMP-TAEVADKLELYSLGQRRW 153 (181)
Q Consensus 82 ~~~~d~ii~v~d~--~~~~s~~~~~~~~~~~~~~-----~~~~~~piilv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~ 153 (181)
++.+|++++|+|+ ++-++-..+...+...-.. +...+.|++++.||.|+....+ .......+... ......
T Consensus 346 ~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~-~~~~~~ 424 (531)
T KOG1191|consen 346 IERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSA-EGRSVF 424 (531)
T ss_pred HhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceecccc-ccCccc
Confidence 6789999999999 3333333434444333211 1124578999999999876411 11100011011 111222
Q ss_pred -EEEEeeccCCCCHHHHHHHHHhhhh
Q 030233 154 -SIQSCSAISGQGLYEGLDWLSNNIS 178 (181)
Q Consensus 154 -~~~~~Sa~~~~~i~~l~~~i~~~~~ 178 (181)
...++|+++++|++.|.+.+.+.+.
T Consensus 425 ~i~~~vs~~tkeg~~~L~~all~~~~ 450 (531)
T KOG1191|consen 425 PIVVEVSCTTKEGCERLSTALLNIVE 450 (531)
T ss_pred ceEEEeeechhhhHHHHHHHHHHHHH
Confidence 4566999999999999998877643
No 261
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.71 E-value=9e-16 Score=105.55 Aligned_cols=155 Identities=14% Similarity=0.089 Sum_probs=97.1
Q ss_pred cEEEEEcCCCCChHHHHHhhhcCCcccc-----cCccceeEEEEEECCeEEEEEEcCCChhh-------HHH----HHhh
Q 030233 18 IKLLMVGLDASGKTTILYKMKLGEIVTT-----TPTIGFNVEAVEYKNKSFCVWDVGGQNKI-------RAL----WRHY 81 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~i~d~~g~~~~-------~~~----~~~~ 81 (181)
++|+++|.+|+|||||+|++++...... ..|.........+.+..+.++||||..+. ... ....
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~ 80 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLS 80 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhc
Confidence 4799999999999999999999873221 23444455556668889999999994332 111 2223
Q ss_pred ccCCCEEEEEEECCCcc-cHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHH--------HhhhCccccCCcc
Q 030233 82 FRDTLGLTFVVDSSDRE-RISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEV--------ADKLELYSLGQRR 152 (181)
Q Consensus 82 ~~~~d~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~--------~~~~~~~~~~~~~ 152 (181)
..++|++++|+++.+.. ......+++..+.... .-.++++++|++|.....+.++. ...... ++
T Consensus 81 ~~g~~~illVi~~~~~t~~d~~~l~~l~~~fg~~--~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~-----c~ 153 (196)
T cd01852 81 APGPHAFLLVVPLGRFTEEEEQAVETLQELFGEK--VLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEK-----CG 153 (196)
T ss_pred CCCCEEEEEEEECCCcCHHHHHHHHHHHHHhChH--hHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHH-----hC
Confidence 45789999999987621 1122223333332211 12578999999998765433332 222211 11
Q ss_pred EEEEEe-----eccCCCCHHHHHHHHHhhhhc
Q 030233 153 WSIQSC-----SAISGQGLYEGLDWLSNNISV 179 (181)
Q Consensus 153 ~~~~~~-----Sa~~~~~i~~l~~~i~~~~~~ 179 (181)
-.++.. |+..+.++++|++.+.+.+.+
T Consensus 154 ~r~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 154 GRYVAFNNKAKGEEQEQQVKELLAKVESMVKE 185 (196)
T ss_pred CeEEEEeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence 123222 366788999999999988775
No 262
>PRK00007 elongation factor G; Reviewed
Probab=99.70 E-value=1.2e-15 Score=122.26 Aligned_cols=112 Identities=16% Similarity=0.081 Sum_probs=80.9
Q ss_pred CccEEEEEcCCCCChHHHHHhhhcCC--cc-------------------cccCccceeEEEEEECCeEEEEEEcCCChhh
Q 030233 16 CRIKLLMVGLDASGKTTILYKMKLGE--IV-------------------TTTPTIGFNVEAVEYKNKSFCVWDVGGQNKI 74 (181)
Q Consensus 16 ~~~~i~~~G~~~~GKssl~~~~~~~~--~~-------------------~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~ 74 (181)
+--+|+++|++++|||||+++++... .. ....|.......+.+.+..+.++||||+.++
T Consensus 9 ~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~f 88 (693)
T PRK00007 9 RYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVDF 88 (693)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHHH
Confidence 34589999999999999999997311 10 1122333444556778999999999999988
Q ss_pred HHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 030233 75 RALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPN 132 (181)
Q Consensus 75 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~ 132 (181)
.......+..+|++++|+|+...-.-+ ....+..+.. .++|+++++||+|+.+
T Consensus 89 ~~ev~~al~~~D~~vlVvda~~g~~~q-t~~~~~~~~~----~~~p~iv~vNK~D~~~ 141 (693)
T PRK00007 89 TIEVERSLRVLDGAVAVFDAVGGVEPQ-SETVWRQADK----YKVPRIAFVNKMDRTG 141 (693)
T ss_pred HHHHHHHHHHcCEEEEEEECCCCcchh-hHHHHHHHHH----cCCCEEEEEECCCCCC
Confidence 888888889999999999987542222 2223333322 3688999999999875
No 263
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.70 E-value=2.7e-16 Score=112.49 Aligned_cols=156 Identities=24% Similarity=0.215 Sum_probs=102.6
Q ss_pred EEEEEcCCCCChHHHHHhhhcCC-------cccccCccceeEEEEEECCeEEEEEEcCCChhhH-------HHHHhhccC
Q 030233 19 KLLMVGLDASGKTTILYKMKLGE-------IVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIR-------ALWRHYFRD 84 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~-------~~~~~~~~~ 84 (181)
.|.++|-|++|||||++.+.... |++..|.+|+-.. .....|.+-|.||--+-. ......++.
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~---~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIER 237 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRV---DGGESFVVADIPGLIEGASEGVGLGLRFLRHIER 237 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEe---cCCCcEEEecCcccccccccCCCccHHHHHHHHh
Confidence 57899999999999999998755 4445566665433 366679999999832211 112234456
Q ss_pred CCEEEEEEECCCccc---HHHHHHHHHHHHcC-CCCCCCeEEEEEeCCCCCCC-CCHHHHHhhhCccccCCccEEEEEee
Q 030233 85 TLGLTFVVDSSDRER---ISEARNELHQILSD-NELSNAALLVFANKQDLPNV-MPTAEVADKLELYSLGQRRWSIQSCS 159 (181)
Q Consensus 85 ~d~ii~v~d~~~~~s---~~~~~~~~~~~~~~-~~~~~~piilv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (181)
+-++++|+|++..+. .+.+.....++... ....+.|.++|+||+|+... +..+.+.+.+... ..+...++ +|
T Consensus 238 t~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~--~~~~~~~~-IS 314 (369)
T COG0536 238 TRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEA--LGWEVFYL-IS 314 (369)
T ss_pred hheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHh--cCCCccee-ee
Confidence 899999999985443 44444444333222 34467899999999996542 3333444444321 11221233 99
Q ss_pred ccCCCCHHHHHHHHHhhhhcc
Q 030233 160 AISGQGLYEGLDWLSNNISVK 180 (181)
Q Consensus 160 a~~~~~i~~l~~~i~~~~~~~ 180 (181)
|.+++|++++...+.+.+.+.
T Consensus 315 a~t~~g~~~L~~~~~~~l~~~ 335 (369)
T COG0536 315 ALTREGLDELLRALAELLEET 335 (369)
T ss_pred hhcccCHHHHHHHHHHHHHHh
Confidence 999999999999998877653
No 264
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.69 E-value=4.1e-16 Score=115.76 Aligned_cols=161 Identities=19% Similarity=0.200 Sum_probs=113.1
Q ss_pred CCCCcc-EEEEEcCCCCChHHHHHhhhcCC--cc----------------cccCccceeEEEEEE-----CCeEEEEEEc
Q 030233 13 FPQCRI-KLLMVGLDASGKTTILYKMKLGE--IV----------------TTTPTIGFNVEAVEY-----KNKSFCVWDV 68 (181)
Q Consensus 13 ~~~~~~-~i~~~G~~~~GKssl~~~~~~~~--~~----------------~~~~~~~~~~~~~~~-----~~~~~~i~d~ 68 (181)
.+++++ +.+++-+-..|||||..|+.... .. +...|+-.....+.+ +.+.++++||
T Consensus 4 ~~~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDT 83 (603)
T COG0481 4 TPQKNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDT 83 (603)
T ss_pred cchhhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCC
Confidence 344455 47899999999999999997532 10 112233323333333 4588999999
Q ss_pred CCChhhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCcccc
Q 030233 69 GGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSL 148 (181)
Q Consensus 69 ~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~ 148 (181)
|||.+|.-.....+..|.+.++|+|++..-.-+.+...+..+ . .+.-+|.|+||+|++.....+...+.....
T Consensus 84 PGHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAl-e----~~LeIiPViNKIDLP~Adpervk~eIe~~i-- 156 (603)
T COG0481 84 PGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL-E----NNLEIIPVLNKIDLPAADPERVKQEIEDII-- 156 (603)
T ss_pred CCccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHH-H----cCcEEEEeeecccCCCCCHHHHHHHHHHHh--
Confidence 999988777777777899999999998654445555555554 2 368899999999998754443333333222
Q ss_pred CCccEEEEEeeccCCCCHHHHHHHHHhhhhcc
Q 030233 149 GQRRWSIQSCSAISGQGLYEGLDWLSNNISVK 180 (181)
Q Consensus 149 ~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~ 180 (181)
+......+.+||++|.||+++++.|.+++...
T Consensus 157 Gid~~dav~~SAKtG~gI~~iLe~Iv~~iP~P 188 (603)
T COG0481 157 GIDASDAVLVSAKTGIGIEDVLEAIVEKIPPP 188 (603)
T ss_pred CCCcchheeEecccCCCHHHHHHHHHhhCCCC
Confidence 33334689999999999999999999988753
No 265
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.68 E-value=3.1e-16 Score=112.78 Aligned_cols=139 Identities=12% Similarity=0.157 Sum_probs=80.5
Q ss_pred CccEEEEEcCCCCChHHHHHhhhcCCcccc-----------cCccceeEEEE--EECC--eEEEEEEcCCChhhH-----
Q 030233 16 CRIKLLMVGLDASGKTTILYKMKLGEIVTT-----------TPTIGFNVEAV--EYKN--KSFCVWDVGGQNKIR----- 75 (181)
Q Consensus 16 ~~~~i~~~G~~~~GKssl~~~~~~~~~~~~-----------~~~~~~~~~~~--~~~~--~~~~i~d~~g~~~~~----- 75 (181)
..++|+++|.+|+|||||+|++++...... .+|........ ...+ ..+.+|||||..+..
T Consensus 3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~ 82 (276)
T cd01850 3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC 82 (276)
T ss_pred cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence 368999999999999999999998874332 23333333322 2233 579999999932211
Q ss_pred -------------H---HHH-----hhcc--CCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 030233 76 -------------A---LWR-----HYFR--DTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPN 132 (181)
Q Consensus 76 -------------~---~~~-----~~~~--~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~ 132 (181)
. ... ..+. .+|+++|+++.+. ..+......+...+.. .+|+++|+||+|+..
T Consensus 83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~-~~l~~~D~~~lk~l~~----~v~vi~VinK~D~l~ 157 (276)
T cd01850 83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTG-HGLKPLDIEFMKRLSK----RVNIIPVIAKADTLT 157 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCC-CCCCHHHHHHHHHHhc----cCCEEEEEECCCcCC
Confidence 0 000 1222 3688888888764 2333332222222222 589999999999976
Q ss_pred CCCHHHHHhhhCccccCCccEEEEEeec
Q 030233 133 VMPTAEVADKLELYSLGQRRWSIQSCSA 160 (181)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (181)
............ ..+...++++|.+..
T Consensus 158 ~~e~~~~k~~i~-~~l~~~~i~~~~~~~ 184 (276)
T cd01850 158 PEELKEFKQRIM-EDIEEHNIKIYKFPE 184 (276)
T ss_pred HHHHHHHHHHHH-HHHHHcCCceECCCC
Confidence 333333333221 112334455666554
No 266
>PRK12740 elongation factor G; Reviewed
Probab=99.68 E-value=3.4e-15 Score=119.70 Aligned_cols=106 Identities=19% Similarity=0.152 Sum_probs=78.8
Q ss_pred EcCCCCChHHHHHhhhcCCc--c-------------------cccCccceeEEEEEECCeEEEEEEcCCChhhHHHHHhh
Q 030233 23 VGLDASGKTTILYKMKLGEI--V-------------------TTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHY 81 (181)
Q Consensus 23 ~G~~~~GKssl~~~~~~~~~--~-------------------~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~ 81 (181)
+|++++|||||+++++...- . ....|++.....+.+.+..+.+|||||+.++...+...
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~ 80 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA 80 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence 59999999999999954320 0 12334455556677789999999999999888888888
Q ss_pred ccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 030233 82 FRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV 133 (181)
Q Consensus 82 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~ 133 (181)
+..+|++++|+|+++....... ..+..+.. .++|+++++||+|....
T Consensus 81 l~~aD~vllvvd~~~~~~~~~~-~~~~~~~~----~~~p~iiv~NK~D~~~~ 127 (668)
T PRK12740 81 LRVLDGAVVVVCAVGGVEPQTE-TVWRQAEK----YGVPRIIFVNKMDRAGA 127 (668)
T ss_pred HHHhCeEEEEEeCCCCcCHHHH-HHHHHHHH----cCCCEEEEEECCCCCCC
Confidence 9999999999999876544333 22333322 36899999999998753
No 267
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.67 E-value=3.8e-16 Score=114.29 Aligned_cols=149 Identities=19% Similarity=0.222 Sum_probs=102.5
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhcCC--cc--------------------------------cccCccceeEEEEEECC
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKLGE--IV--------------------------------TTTPTIGFNVEAVEYKN 60 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~~~--~~--------------------------------~~~~~~~~~~~~~~~~~ 60 (181)
+..++++++|+..+|||||+-+|+... .. +...|+......++.+.
T Consensus 5 Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k 84 (428)
T COG5256 5 KPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDK 84 (428)
T ss_pred CCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCC
Confidence 457899999999999999999986421 00 11224445555566678
Q ss_pred eEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCCcc---cH-----HHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 030233 61 KSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRE---RI-----SEARNELHQILSDNELSNAALLVFANKQDLPN 132 (181)
Q Consensus 61 ~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~-----~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~ 132 (181)
..+.|+|+||+.+|-.....-..++|+.|+|+|+.+.+ +| ......+...+ .-..+|+++||+|+.+
T Consensus 85 ~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tl-----Gi~~lIVavNKMD~v~ 159 (428)
T COG5256 85 YNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTL-----GIKQLIVAVNKMDLVS 159 (428)
T ss_pred ceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhc-----CCceEEEEEEcccccc
Confidence 89999999999999988888889999999999998653 22 12222222222 3456899999999976
Q ss_pred CC--CHHHHHhhh----CccccCCccEEEEEeeccCCCCHHH
Q 030233 133 VM--PTAEVADKL----ELYSLGQRRWSIQSCSAISGQGLYE 168 (181)
Q Consensus 133 ~~--~~~~~~~~~----~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (181)
-. ..+++...+ ....+...+++|+++|+..|.|+.+
T Consensus 160 wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~ 201 (428)
T COG5256 160 WDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK 201 (428)
T ss_pred cCHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence 21 122222222 2222344468899999999999865
No 268
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.67 E-value=2.3e-15 Score=110.37 Aligned_cols=133 Identities=26% Similarity=0.315 Sum_probs=101.6
Q ss_pred ccceeEEEEEECCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCCc----------ccHHHHHHHHHHHHcCCCCC
Q 030233 48 TIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDR----------ERISEARNELHQILSDNELS 117 (181)
Q Consensus 48 ~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~----------~s~~~~~~~~~~~~~~~~~~ 117 (181)
|.|+....+.+.+..+.+||++|+...+..|..++.+++++++|+|+++. ..+.+....+..++......
T Consensus 148 T~Gi~~~~f~~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~ 227 (317)
T cd00066 148 TTGIVETKFTIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFA 227 (317)
T ss_pred cCCeeEEEEEecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCcccc
Confidence 44666666777889999999999999999999999999999999999863 46777788888888887778
Q ss_pred CCeEEEEEeCCCCCCC------------------CCHHHHHhhhCccc-----cCCccEEEEEeeccCCCCHHHHHHHHH
Q 030233 118 NAALLVFANKQDLPNV------------------MPTAEVADKLELYS-----LGQRRWSIQSCSAISGQGLYEGLDWLS 174 (181)
Q Consensus 118 ~~piilv~nK~D~~~~------------------~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~i~~l~~~i~ 174 (181)
+.|+++++||.|+..+ .+.+.....+.... ...+.+.+..++|.+.++++.+|+.+.
T Consensus 228 ~~pill~~NK~D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~ 307 (317)
T cd00066 228 NTSIILFLNKKDLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVK 307 (317)
T ss_pred CCCEEEEccChHHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHH
Confidence 9999999999996431 11222222111110 013566778899999999999999998
Q ss_pred hhhhcc
Q 030233 175 NNISVK 180 (181)
Q Consensus 175 ~~~~~~ 180 (181)
+.+.++
T Consensus 308 ~~i~~~ 313 (317)
T cd00066 308 DIILQN 313 (317)
T ss_pred HHHHHH
Confidence 877654
No 269
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.67 E-value=2.6e-15 Score=110.89 Aligned_cols=133 Identities=23% Similarity=0.307 Sum_probs=100.8
Q ss_pred ccceeEEEEEECCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCCc----------ccHHHHHHHHHHHHcCCCCC
Q 030233 48 TIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDR----------ERISEARNELHQILSDNELS 117 (181)
Q Consensus 48 ~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~----------~s~~~~~~~~~~~~~~~~~~ 117 (181)
|.|+....+.+.+..+.+||++|+...+..|..++.+++++++|+|+++- ..+.+....+..+++.....
T Consensus 171 T~Gi~~~~f~~~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~ 250 (342)
T smart00275 171 TTGIQETAFIVKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFA 250 (342)
T ss_pred ccceEEEEEEECCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCcccc
Confidence 44556666777888999999999999999999999999999999999863 35778888889998887778
Q ss_pred CCeEEEEEeCCCCCCC-----------------CCHHHHHhhhC----cccc--CCccEEEEEeeccCCCCHHHHHHHHH
Q 030233 118 NAALLVFANKQDLPNV-----------------MPTAEVADKLE----LYSL--GQRRWSIQSCSAISGQGLYEGLDWLS 174 (181)
Q Consensus 118 ~~piilv~nK~D~~~~-----------------~~~~~~~~~~~----~~~~--~~~~~~~~~~Sa~~~~~i~~l~~~i~ 174 (181)
+.|+++++||.|+..+ .+.+...+.+. .... ..+.+.++.++|.+-.++..+|+.+.
T Consensus 251 ~~piil~~NK~D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~ 330 (342)
T smart00275 251 NTSIILFLNKIDLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVK 330 (342)
T ss_pred CCcEEEEEecHHhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHH
Confidence 9999999999997431 11112111111 1110 12456778899999999999999988
Q ss_pred hhhhcc
Q 030233 175 NNISVK 180 (181)
Q Consensus 175 ~~~~~~ 180 (181)
+.+.++
T Consensus 331 ~~I~~~ 336 (342)
T smart00275 331 DIILQR 336 (342)
T ss_pred HHHHHH
Confidence 776653
No 270
>PRK09866 hypothetical protein; Provisional
Probab=99.66 E-value=7.4e-15 Score=113.64 Aligned_cols=113 Identities=18% Similarity=0.171 Sum_probs=74.0
Q ss_pred eEEEEEEcCCChh-----hHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC
Q 030233 61 KSFCVWDVGGQNK-----IRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMP 135 (181)
Q Consensus 61 ~~~~i~d~~g~~~-----~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~ 135 (181)
.++.+.||||-.. ........+..+|++++|+|+...-+... ..+...+.... ...|+++|+||+|+.+..+
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D--eeIlk~Lkk~~-K~~PVILVVNKIDl~dree 306 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD--EEVREAILAVG-QSVPLYVLVNKFDQQDRNS 306 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH--HHHHHHHHhcC-CCCCEEEEEEcccCCCccc
Confidence 5688999999543 23334457889999999999976433322 23333333311 1369999999999864322
Q ss_pred --HHHHHhhhCcc--ccCCccEEEEEeeccCCCCHHHHHHHHHhh
Q 030233 136 --TAEVADKLELY--SLGQRRWSIQSCSAISGQGLYEGLDWLSNN 176 (181)
Q Consensus 136 --~~~~~~~~~~~--~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~ 176 (181)
.+.+...+... ........++++||++|.|++.+++.|.+.
T Consensus 307 ddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~~ 351 (741)
T PRK09866 307 DDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELANN 351 (741)
T ss_pred chHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHhC
Confidence 34444443211 112234479999999999999999999873
No 271
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.64 E-value=2.6e-15 Score=111.31 Aligned_cols=157 Identities=20% Similarity=0.248 Sum_probs=119.9
Q ss_pred EEEEEcCCCCChHHHHHhhhcCC--cccc-----------------cCccceeEEEEEECCeEEEEEEcCCChhhHHHHH
Q 030233 19 KLLMVGLDASGKTTILYKMKLGE--IVTT-----------------TPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWR 79 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~~~--~~~~-----------------~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~ 79 (181)
+|+++-+...|||||+..++.++ |... ..|+-.....+.|.+..+.|.|||||.+|....+
T Consensus 7 NIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGEVE 86 (603)
T COG1217 7 NIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGEVE 86 (603)
T ss_pred eeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccchhh
Confidence 58999999999999999998765 2211 1122223334677899999999999999999999
Q ss_pred hhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccc-----cCCccEE
Q 030233 80 HYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYS-----LGQRRWS 154 (181)
Q Consensus 80 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~ 154 (181)
..+...|++++++|+.+ -.+.+.+....+.+.. +.+.|+|+||+|.+.....+.+.+.+.+.. -.+.+.+
T Consensus 87 Rvl~MVDgvlLlVDA~E-GpMPQTrFVlkKAl~~----gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLdFP 161 (603)
T COG1217 87 RVLSMVDGVLLLVDASE-GPMPQTRFVLKKALAL----GLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLDFP 161 (603)
T ss_pred hhhhhcceEEEEEEccc-CCCCchhhhHHHHHHc----CCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCCCc
Confidence 99999999999999984 3455666666676665 788899999999988666655555443321 1345778
Q ss_pred EEEeeccCCC----------CHHHHHHHHHhhhhcc
Q 030233 155 IQSCSAISGQ----------GLYEGLDWLSNNISVK 180 (181)
Q Consensus 155 ~~~~Sa~~~~----------~i~~l~~~i~~~~~~~ 180 (181)
++..|+..|. ++..||+.|.+.+...
T Consensus 162 ivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P 197 (603)
T COG1217 162 IVYASARNGTASLDPEDEADDMAPLFETILDHVPAP 197 (603)
T ss_pred EEEeeccCceeccCccccccchhHHHHHHHHhCCCC
Confidence 9999998764 8999999999887653
No 272
>PRK13768 GTPase; Provisional
Probab=99.63 E-value=1.7e-15 Score=107.83 Aligned_cols=117 Identities=17% Similarity=0.104 Sum_probs=73.6
Q ss_pred eEEEEEEcCCChhhH---HHHHhhc---cC--CCEEEEEEECCCcccHHHH-HHHHHHHHcCCCCCCCeEEEEEeCCCCC
Q 030233 61 KSFCVWDVGGQNKIR---ALWRHYF---RD--TLGLTFVVDSSDRERISEA-RNELHQILSDNELSNAALLVFANKQDLP 131 (181)
Q Consensus 61 ~~~~i~d~~g~~~~~---~~~~~~~---~~--~d~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~D~~ 131 (181)
..+.+||+||+.+.. ..+..++ .. .+++++++|+......... ..++....... ..+.|+++|+||+|+.
T Consensus 97 ~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~-~~~~~~i~v~nK~D~~ 175 (253)
T PRK13768 97 ADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQL-RLGLPQIPVLNKADLL 175 (253)
T ss_pred CCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHH-HcCCCEEEEEEhHhhc
Confidence 479999999976532 2232222 22 8999999999654333222 22222211100 1478999999999998
Q ss_pred CCCCHHHHHhhhCc--------c---------------ccC--CccEEEEEeeccCCCCHHHHHHHHHhhhh
Q 030233 132 NVMPTAEVADKLEL--------Y---------------SLG--QRRWSIQSCSAISGQGLYEGLDWLSNNIS 178 (181)
Q Consensus 132 ~~~~~~~~~~~~~~--------~---------------~~~--~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~ 178 (181)
+....+...+.+.. . .+. ....+++++|+++++|+++++++|.+.+.
T Consensus 176 ~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~ 247 (253)
T PRK13768 176 SEEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFC 247 (253)
T ss_pred CchhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcC
Confidence 76555444443321 0 000 12347899999999999999999988764
No 273
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.61 E-value=3.2e-14 Score=106.81 Aligned_cols=78 Identities=28% Similarity=0.359 Sum_probs=53.9
Q ss_pred cEEEEEcCCCCChHHHHHhhhcCCccc--c-----cCccceeEEEEE--------------------ECCeEEEEEEcCC
Q 030233 18 IKLLMVGLDASGKTTILYKMKLGEIVT--T-----TPTIGFNVEAVE--------------------YKNKSFCVWDVGG 70 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~~~~~~--~-----~~~~~~~~~~~~--------------------~~~~~~~i~d~~g 70 (181)
++|+++|.|++|||||+|++.+..... + .|+.|....... .....+++||+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 589999999999999999999876321 1 344443221100 2336789999999
Q ss_pred C----hhhHHHHHh---hccCCCEEEEEEECC
Q 030233 71 Q----NKIRALWRH---YFRDTLGLTFVVDSS 95 (181)
Q Consensus 71 ~----~~~~~~~~~---~~~~~d~ii~v~d~~ 95 (181)
. .....+... .++.+|++++|+|+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 3 333333333 478999999999996
No 274
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.60 E-value=4.3e-15 Score=91.39 Aligned_cols=138 Identities=21% Similarity=0.204 Sum_probs=92.7
Q ss_pred EEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEECCeEEEEEEcCC----ChhhHHHHHhhccCCCEEEEEEEC
Q 030233 19 KLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGG----QNKIRALWRHYFRDTLGLTFVVDS 94 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g----~~~~~~~~~~~~~~~d~ii~v~d~ 94 (181)
|++++|..|+|||||.+++-|..... .-|-. +++.+ --.+|||| +..+..-......++|++++|-++
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~ly-kKTQA-----ve~~d--~~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~a 74 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTLY-KKTQA-----VEFND--KGDIDTPGEYFEHPRWYHALITTLQDADVIIYVHAA 74 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhhh-cccce-----eeccC--ccccCCchhhhhhhHHHHHHHHHhhccceeeeeecc
Confidence 68999999999999999998775321 11111 11111 12469999 233333344455789999999999
Q ss_pred CCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHHHHHH
Q 030233 95 SDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLS 174 (181)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~ 174 (181)
+++++-- ..-+..+ ...|+|-+++|.|+.+..+.+-.+..+.... .-++|++|+.++.|++++++.|.
T Consensus 75 nd~~s~f--~p~f~~~------~~k~vIgvVTK~DLaed~dI~~~~~~L~eaG----a~~IF~~s~~d~~gv~~l~~~L~ 142 (148)
T COG4917 75 NDPESRF--PPGFLDI------GVKKVIGVVTKADLAEDADISLVKRWLREAG----AEPIFETSAVDNQGVEELVDYLA 142 (148)
T ss_pred cCccccC--Ccccccc------cccceEEEEecccccchHhHHHHHHHHHHcC----CcceEEEeccCcccHHHHHHHHH
Confidence 8875421 1111111 3456999999999997666666666554332 23699999999999999999886
Q ss_pred hh
Q 030233 175 NN 176 (181)
Q Consensus 175 ~~ 176 (181)
..
T Consensus 143 ~~ 144 (148)
T COG4917 143 SL 144 (148)
T ss_pred hh
Confidence 53
No 275
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.59 E-value=6.4e-15 Score=102.64 Aligned_cols=166 Identities=17% Similarity=0.186 Sum_probs=104.4
Q ss_pred hhCCCCccEEEEEcCCCCChHHHHHhhhcCC----cccccC---------ccceeEE---EEE-----------------
Q 030233 11 RFFPQCRIKLLMVGLDASGKTTILYKMKLGE----IVTTTP---------TIGFNVE---AVE----------------- 57 (181)
Q Consensus 11 ~~~~~~~~~i~~~G~~~~GKssl~~~~~~~~----~~~~~~---------~~~~~~~---~~~----------------- 57 (181)
+...+++.-|+++|..|||||||+.|+...- .+.+.. +.+.+.. +++
T Consensus 13 ~~~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~ 92 (366)
T KOG1532|consen 13 SGAIQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIV 92 (366)
T ss_pred cccccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchh
Confidence 3456778899999999999999999996532 222111 0000000 000
Q ss_pred --------------------ECCeEEEEEEcCCChhh------HHHHHhhc--cCCCEEEEEEECCC---cccHHHHHHH
Q 030233 58 --------------------YKNKSFCVWDVGGQNKI------RALWRHYF--RDTLGLTFVVDSSD---RERISEARNE 106 (181)
Q Consensus 58 --------------------~~~~~~~i~d~~g~~~~------~~~~~~~~--~~~d~ii~v~d~~~---~~s~~~~~~~ 106 (181)
.......++||||+-.- ..++...+ ....+++||+|... +.+|=.-..+
T Consensus 93 TsLNLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlY 172 (366)
T KOG1532|consen 93 TSLNLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLY 172 (366)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHH
Confidence 03356899999996431 12222222 23578889999853 4555555555
Q ss_pred HHHHHcCCCCCCCeEEEEEeCCCCCCCCC-------HHHHHhhhCc--ccc--------------CCccEEEEEeeccCC
Q 030233 107 LHQILSDNELSNAALLVFANKQDLPNVMP-------TAEVADKLEL--YSL--------------GQRRWSIQSCSAISG 163 (181)
Q Consensus 107 ~~~~~~~~~~~~~piilv~nK~D~~~~~~-------~~~~~~~~~~--~~~--------------~~~~~~~~~~Sa~~~ 163 (181)
.-.++.. .+.|.|++.||+|+....- .+.+.+.+.. ..+ -..++..+-+|+.+|
T Consensus 173 AcSilyk---tklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG 249 (366)
T KOG1532|consen 173 ACSILYK---TKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTG 249 (366)
T ss_pred HHHHHHh---ccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccC
Confidence 5556555 6899999999999976432 2333333321 000 114678999999999
Q ss_pred CCHHHHHHHHHhhhhc
Q 030233 164 QGLYEGLDWLSNNISV 179 (181)
Q Consensus 164 ~~i~~l~~~i~~~~~~ 179 (181)
.|.+++|..+.+.+.+
T Consensus 250 ~G~ddf~~av~~~vdE 265 (366)
T KOG1532|consen 250 EGFDDFFTAVDESVDE 265 (366)
T ss_pred CcHHHHHHHHHHHHHH
Confidence 9999999999887654
No 276
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.58 E-value=2.8e-14 Score=102.63 Aligned_cols=146 Identities=16% Similarity=0.183 Sum_probs=104.2
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhcCCcc------------------------------------cccCccceeEEEEEE
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKLGEIV------------------------------------TTTPTIGFNVEAVEY 58 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~------------------------------------~~~~~~~~~~~~~~~ 58 (181)
+..++++.+|...-||||||-|++..... +...|+++.++.+.-
T Consensus 4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT 83 (431)
T COG2895 4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST 83 (431)
T ss_pred ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc
Confidence 34679999999999999999999763200 123466666666767
Q ss_pred CCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCCcccHHHHH---HHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC
Q 030233 59 KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEAR---NELHQILSDNELSNAALLVFANKQDLPNVMP 135 (181)
Q Consensus 59 ~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~---~~~~~~~~~~~~~~~piilv~nK~D~~~~~~ 135 (181)
...+|.+-|||||++|-...-.-...||..|+++|+- ..+.+.. .++..++. -..+++++||+|+.+..+
T Consensus 84 ~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR--~Gvl~QTrRHs~I~sLLG-----IrhvvvAVNKmDLvdy~e 156 (431)
T COG2895 84 EKRKFIIADTPGHEQYTRNMATGASTADLAILLVDAR--KGVLEQTRRHSFIASLLG-----IRHVVVAVNKMDLVDYSE 156 (431)
T ss_pred ccceEEEecCCcHHHHhhhhhcccccccEEEEEEecc--hhhHHHhHHHHHHHHHhC-----CcEEEEEEeeecccccCH
Confidence 8899999999999999998888888999999999994 4443322 23444443 356899999999986332
Q ss_pred --HHHHHhhhCc--cccCCccEEEEEeeccCCCCHH
Q 030233 136 --TAEVADKLEL--YSLGQRRWSIQSCSAISGQGLY 167 (181)
Q Consensus 136 --~~~~~~~~~~--~~~~~~~~~~~~~Sa~~~~~i~ 167 (181)
.+.+...+.. ..++.....++++||..|.|+-
T Consensus 157 ~~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~ 192 (431)
T COG2895 157 EVFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVV 192 (431)
T ss_pred HHHHHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence 2333333321 1123445589999999999874
No 277
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.56 E-value=2.6e-14 Score=104.54 Aligned_cols=108 Identities=15% Similarity=0.131 Sum_probs=69.4
Q ss_pred CCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHH
Q 030233 59 KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAE 138 (181)
Q Consensus 59 ~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~ 138 (181)
.+..+.++||+|....... ....+|.++++.+....+.++.... .+++. .-++|+||+|+........
T Consensus 147 ~g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k~---gi~E~------aDIiVVNKaDl~~~~~a~~ 214 (332)
T PRK09435 147 AGYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIKK---GIMEL------ADLIVINKADGDNKTAARR 214 (332)
T ss_pred cCCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHHh---hhhhh------hheEEeehhcccchhHHHH
Confidence 3578999999996643322 4556999999987544444443322 22222 2389999999876443322
Q ss_pred ----HHhhhCccccC--CccEEEEEeeccCCCCHHHHHHHHHhhhh
Q 030233 139 ----VADKLELYSLG--QRRWSIQSCSAISGQGLYEGLDWLSNNIS 178 (181)
Q Consensus 139 ----~~~~~~~~~~~--~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~ 178 (181)
+...+...... .+..+++.+||++|+|++++++.+.+...
T Consensus 215 ~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~ 260 (332)
T PRK09435 215 AAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA 260 (332)
T ss_pred HHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 33333221111 23347999999999999999999988643
No 278
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.55 E-value=1.3e-13 Score=96.55 Aligned_cols=140 Identities=14% Similarity=0.058 Sum_probs=84.1
Q ss_pred CccEEEEEcCCCCChHHHHHhhhcCCc-ccccCccceeEEEEEECCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEEC
Q 030233 16 CRIKLLMVGLDASGKTTILYKMKLGEI-VTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDS 94 (181)
Q Consensus 16 ~~~~i~~~G~~~~GKssl~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~ 94 (181)
....|+++|.+|+|||||++.+++... .......|. .......+..+.++||||.. .. .....+.+|++++|+|+
T Consensus 38 ~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i~i~~~~~~~i~~vDtPg~~--~~-~l~~ak~aDvVllviDa 113 (225)
T cd01882 38 PPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-ITVVTGKKRRLTFIECPNDI--NA-MIDIAKVADLVLLLIDA 113 (225)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-EEEEecCCceEEEEeCCchH--HH-HHHHHHhcCEEEEEEec
Confidence 456799999999999999999987531 111122221 11223367889999999854 22 23345789999999999
Q ss_pred CCcccHHHHHHHHHHHHcCCCCCCCe-EEEEEeCCCCCCCCC-HHHHHhhhCcccc--CCccEEEEEeeccCCC
Q 030233 95 SDRERISEARNELHQILSDNELSNAA-LLVFANKQDLPNVMP-TAEVADKLELYSL--GQRRWSIQSCSAISGQ 164 (181)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~D~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~Sa~~~~ 164 (181)
...... ....+...+.. .+.| +++|+||+|+.+... .+++.+.+..... .....+++.+||+++-
T Consensus 114 ~~~~~~--~~~~i~~~l~~---~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~ 182 (225)
T cd01882 114 SFGFEM--ETFEFLNILQV---HGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHG 182 (225)
T ss_pred CcCCCH--HHHHHHHHHHH---cCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCC
Confidence 754322 22223333332 2456 456999999874321 2232222211110 1134589999999864
No 279
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.54 E-value=3.8e-14 Score=114.16 Aligned_cols=112 Identities=21% Similarity=0.112 Sum_probs=78.0
Q ss_pred CccEEEEEcCCCCChHHHHHhhhcC---------------Cccc----ccCccceeEE----EEEECCeEEEEEEcCCCh
Q 030233 16 CRIKLLMVGLDASGKTTILYKMKLG---------------EIVT----TTPTIGFNVE----AVEYKNKSFCVWDVGGQN 72 (181)
Q Consensus 16 ~~~~i~~~G~~~~GKssl~~~~~~~---------------~~~~----~~~~~~~~~~----~~~~~~~~~~i~d~~g~~ 72 (181)
+.-+|+++|+.++|||||+++++.. ++.. ...|+..... .+...+..+.+|||||+.
T Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~ 97 (720)
T TIGR00490 18 FIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHV 97 (720)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCcc
Confidence 4458999999999999999999742 1111 1223332221 134477899999999999
Q ss_pred hhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 030233 73 KIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPN 132 (181)
Q Consensus 73 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~ 132 (181)
++.......++.+|++++|+|+.+.-..+. ...+..... .+.|+++++||+|...
T Consensus 98 ~f~~~~~~al~~aD~~llVvda~~g~~~~t-~~~~~~~~~----~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 98 DFGGDVTRAMRAVDGAIVVVCAVEGVMPQT-ETVLRQALK----ENVKPVLFINKVDRLI 152 (720)
T ss_pred ccHHHHHHHHHhcCEEEEEEecCCCCCccH-HHHHHHHHH----cCCCEEEEEEChhccc
Confidence 998888889999999999999975321111 122222222 3578889999999864
No 280
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.54 E-value=1.3e-13 Score=100.40 Aligned_cols=133 Identities=24% Similarity=0.352 Sum_probs=102.5
Q ss_pred ccceeEEEEEECCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCCcc----------cHHHHHHHHHHHHcCCCCC
Q 030233 48 TIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRE----------RISEARNELHQILSDNELS 117 (181)
Q Consensus 48 ~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~----------s~~~~~~~~~~~~~~~~~~ 117 (181)
|.|+....+.+.+..+.++|++|+..-+.-|...+.+++++++|+++++.+ .+.+....+..+.++.+..
T Consensus 182 T~GI~e~~F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~ 261 (354)
T KOG0082|consen 182 TTGIVEVEFTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFA 261 (354)
T ss_pred cCCeeEEEEEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccc
Confidence 667777788889999999999999998899999999999999999998532 4556677889999999999
Q ss_pred CCeEEEEEeCCCCCCCC-----------------CHHHHHhhhC----cccc-CCccEEEEEeeccCCCCHHHHHHHHHh
Q 030233 118 NAALLVFANKQDLPNVM-----------------PTAEVADKLE----LYSL-GQRRWSIQSCSAISGQGLYEGLDWLSN 175 (181)
Q Consensus 118 ~~piilv~nK~D~~~~~-----------------~~~~~~~~~~----~~~~-~~~~~~~~~~Sa~~~~~i~~l~~~i~~ 175 (181)
+.++|+++||.|+..+. ..++....+. .... ..+.+.+..+.|.+-.+|+.+|+.+.+
T Consensus 262 ~tsiiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d 341 (354)
T KOG0082|consen 262 NTSIILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTD 341 (354)
T ss_pred cCcEEEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHH
Confidence 99999999999985421 1112111111 1111 225666778899999999999999988
Q ss_pred hhhcc
Q 030233 176 NISVK 180 (181)
Q Consensus 176 ~~~~~ 180 (181)
.+.+.
T Consensus 342 ~Ii~~ 346 (354)
T KOG0082|consen 342 TIIQN 346 (354)
T ss_pred HHHHH
Confidence 77654
No 281
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.54 E-value=2.8e-13 Score=111.23 Aligned_cols=141 Identities=23% Similarity=0.202 Sum_probs=89.6
Q ss_pred CChHHHHHhhhcCCcccc-----cCccceeEEEEEE----------------CCeEEEEEEcCCChhhHHHHHhhccCCC
Q 030233 28 SGKTTILYKMKLGEIVTT-----TPTIGFNVEAVEY----------------KNKSFCVWDVGGQNKIRALWRHYFRDTL 86 (181)
Q Consensus 28 ~GKssl~~~~~~~~~~~~-----~~~~~~~~~~~~~----------------~~~~~~i~d~~g~~~~~~~~~~~~~~~d 86 (181)
++||||+.++-+.+.+.. ..-+|........ ..-.+.+|||||++.+..+....+..+|
T Consensus 472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aD 551 (1049)
T PRK14845 472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLAD 551 (1049)
T ss_pred cccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCC
Confidence 459999999987664321 1122222221110 1113899999999999988888888999
Q ss_pred EEEEEEECCC---cccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--------------HHHHHhh-------
Q 030233 87 GLTFVVDSSD---RERISEARNELHQILSDNELSNAALLVFANKQDLPNVMP--------------TAEVADK------- 142 (181)
Q Consensus 87 ~ii~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--------------~~~~~~~------- 142 (181)
++++|+|+++ +.++..+ . .+.. .++|+++++||+|+..... .+.....
T Consensus 552 ivlLVVDa~~Gi~~qT~e~I----~-~lk~---~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~ 623 (1049)
T PRK14845 552 LAVLVVDINEGFKPQTIEAI----N-ILRQ---YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYE 623 (1049)
T ss_pred EEEEEEECcccCCHhHHHHH----H-HHHH---cCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHH
Confidence 9999999986 3333322 2 2222 3689999999999854211 0111110
Q ss_pred ----hCcccc----------CCccEEEEEeeccCCCCHHHHHHHHHhh
Q 030233 143 ----LELYSL----------GQRRWSIQSCSAISGQGLYEGLDWLSNN 176 (181)
Q Consensus 143 ----~~~~~~----------~~~~~~~~~~Sa~~~~~i~~l~~~i~~~ 176 (181)
+..... -...++++++||++|+|+++|.+.|...
T Consensus 624 v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l 671 (1049)
T PRK14845 624 LIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGL 671 (1049)
T ss_pred HhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHh
Confidence 110000 1246789999999999999999988643
No 282
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.52 E-value=6.7e-13 Score=94.00 Aligned_cols=117 Identities=9% Similarity=0.064 Sum_probs=72.7
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhcCCccccc----CccceeEEEEEECCeEEEEEEcCCChhhH------H----HHHh
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKLGEIVTTT----PTIGFNVEAVEYKNKSFCVWDVGGQNKIR------A----LWRH 80 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~i~d~~g~~~~~------~----~~~~ 80 (181)
..+++|+++|.+|+|||||+|++.+....... .|...........+..+.++||||..... . ....
T Consensus 29 ~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I~~ 108 (249)
T cd01853 29 DFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSSIKR 108 (249)
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHHHHH
Confidence 45789999999999999999999997643322 22233333344577899999999955431 0 0222
Q ss_pred hcc--CCCEEEEEEECCCcc-cHH--HHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 030233 81 YFR--DTLGLTFVVDSSDRE-RIS--EARNELHQILSDNELSNAALLVFANKQDLPNV 133 (181)
Q Consensus 81 ~~~--~~d~ii~v~d~~~~~-s~~--~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~ 133 (181)
++. ..|++++|..++... ... .+...+....... --.++++|.||+|...+
T Consensus 109 ~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~--i~~~~ivV~T~~d~~~p 164 (249)
T cd01853 109 YLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPS--IWRNAIVVLTHAASSPP 164 (249)
T ss_pred HHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChh--hHhCEEEEEeCCccCCC
Confidence 332 578888887665321 221 2233333332211 12469999999998643
No 283
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.52 E-value=3.7e-14 Score=106.10 Aligned_cols=162 Identities=15% Similarity=0.138 Sum_probs=108.8
Q ss_pred CccEEEEEcCCCCChHHHHHhhhcCC--ccccc-CccceeEEEEEECCeEEEEEEcCCChh----hHHH----HHh-hcc
Q 030233 16 CRIKLLMVGLDASGKTTILYKMKLGE--IVTTT-PTIGFNVEAVEYKNKSFCVWDVGGQNK----IRAL----WRH-YFR 83 (181)
Q Consensus 16 ~~~~i~~~G~~~~GKssl~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~i~d~~g~~~----~~~~----~~~-~~~ 83 (181)
..-.++++|-|++|||||+|.+...+ ..++. .|.+.-...+.+.-..+++.||||--+ .... ... ..+
T Consensus 167 ~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IEmqsITALAH 246 (620)
T KOG1490|consen 167 NTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITALAH 246 (620)
T ss_pred CcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhhHHHHHHHHHHHH
Confidence 45679999999999999999887665 22222 233333444555667889999999211 1111 111 112
Q ss_pred CCCEEEEEEECCCcc--cHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeecc
Q 030233 84 DTLGLTFVVDSSDRE--RISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAI 161 (181)
Q Consensus 84 ~~d~ii~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (181)
--.+|+|+.|++... |+......|..+.-. +.+.|+|+|+||+|.....+..+-...+-.......+++++++|+.
T Consensus 247 LraaVLYfmDLSe~CGySva~QvkLfhsIKpL--FaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~tS~~ 324 (620)
T KOG1490|consen 247 LRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPL--FANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQTSCV 324 (620)
T ss_pred hhhhheeeeechhhhCCCHHHHHHHHHHhHHH--hcCCceEEEeecccccCccccCHHHHHHHHHHHhccCceEEEeccc
Confidence 236799999998653 556666666666433 3589999999999997765554444333222224566899999999
Q ss_pred CCCCHHHHHHHHHhhhhc
Q 030233 162 SGQGLYEGLDWLSNNISV 179 (181)
Q Consensus 162 ~~~~i~~l~~~i~~~~~~ 179 (181)
+-+|+.++....++.+..
T Consensus 325 ~eegVm~Vrt~ACe~LLa 342 (620)
T KOG1490|consen 325 QEEGVMDVRTTACEALLA 342 (620)
T ss_pred chhceeeHHHHHHHHHHH
Confidence 999999998888877643
No 284
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.52 E-value=1e-12 Score=94.63 Aligned_cols=116 Identities=10% Similarity=0.094 Sum_probs=70.5
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhcCCcccccCc----cceeEEEEEECCeEEEEEEcCCChhhHHH---HHhhc-----
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPT----IGFNVEAVEYKNKSFCVWDVGGQNKIRAL---WRHYF----- 82 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~i~d~~g~~~~~~~---~~~~~----- 82 (181)
...++|+++|.+|+||||++|++++......+.. ...........+..+.++||||..+.... ....+
T Consensus 36 ~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l~ 115 (313)
T TIGR00991 36 VSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGGYINDQAVNIIKRFLL 115 (313)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEECCCCCchHHHHHHHHHHHHHHhh
Confidence 4578999999999999999999998763222211 11112223347889999999996543221 11111
Q ss_pred -cCCCEEEEEEECCCc--ccH-HHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 030233 83 -RDTLGLTFVVDSSDR--ERI-SEARNELHQILSDNELSNAALLVFANKQDLPN 132 (181)
Q Consensus 83 -~~~d~ii~v~d~~~~--~s~-~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~ 132 (181)
...|+++||.+++.. ... ..+...+..+.... --.++|+++|++|...
T Consensus 116 ~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~--iw~~~IVVfTh~d~~~ 167 (313)
T TIGR00991 116 GKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKD--IWRKSLVVLTHAQFSP 167 (313)
T ss_pred cCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhh--hhccEEEEEECCccCC
Confidence 258999999665422 211 22223333332211 1246899999999753
No 285
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.52 E-value=4.3e-13 Score=99.19 Aligned_cols=154 Identities=18% Similarity=0.077 Sum_probs=113.2
Q ss_pred EEEEEcCCCCChHHHHHhhhcCCcc------cccCccceeEEEEEECCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEE
Q 030233 19 KLLMVGLDASGKTTILYKMKLGEIV------TTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVV 92 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (181)
-|+..|+-..|||||+..+.+.... ...-|+...++.....+..+.++|+||++++-......+...|..++|+
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLvV 81 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLVV 81 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEEE
Confidence 4788999999999999999887632 2345666666777778889999999999999988888888999999999
Q ss_pred ECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHHHH
Q 030233 93 DSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDW 172 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 172 (181)
|.++. +......-..++... .....++|++|+|..++...++..+.+-.. ....+.+++.+|+.+|+||++|.+.
T Consensus 82 ~~deG--l~~qtgEhL~iLdll--gi~~giivltk~D~~d~~r~e~~i~~Il~~-l~l~~~~i~~~s~~~g~GI~~Lk~~ 156 (447)
T COG3276 82 AADEG--LMAQTGEHLLILDLL--GIKNGIIVLTKADRVDEARIEQKIKQILAD-LSLANAKIFKTSAKTGRGIEELKNE 156 (447)
T ss_pred eCccC--cchhhHHHHHHHHhc--CCCceEEEEeccccccHHHHHHHHHHHHhh-cccccccccccccccCCCHHHHHHH
Confidence 99532 222111111222221 235579999999998765555544444221 1256678899999999999999999
Q ss_pred HHhhh
Q 030233 173 LSNNI 177 (181)
Q Consensus 173 i~~~~ 177 (181)
|.+..
T Consensus 157 l~~L~ 161 (447)
T COG3276 157 LIDLL 161 (447)
T ss_pred HHHhh
Confidence 98876
No 286
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.51 E-value=2.9e-13 Score=94.11 Aligned_cols=160 Identities=14% Similarity=0.080 Sum_probs=90.9
Q ss_pred cEEEEEcCCCCChHHHHHhhhcCCcccc-----cCccceeEEEEEECCeEEEEEEcCCChh-------hHHHH----Hhh
Q 030233 18 IKLLMVGLDASGKTTILYKMKLGEIVTT-----TPTIGFNVEAVEYKNKSFCVWDVGGQNK-------IRALW----RHY 81 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~i~d~~g~~~-------~~~~~----~~~ 81 (181)
++|+++|.+|+||||++|.+++...... ..|...........+..+.++||||-.+ ..... ...
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~ 80 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLC 80 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhc
Confidence 4899999999999999999999884322 2345555666677999999999999321 11111 123
Q ss_pred ccCCCEEEEEEECCCcc-cHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhC---cc-ccCCccEEEE
Q 030233 82 FRDTLGLTFVVDSSDRE-RISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLE---LY-SLGQRRWSIQ 156 (181)
Q Consensus 82 ~~~~d~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~---~~-~~~~~~~~~~ 156 (181)
..+.|++++|+.+.... .-.....++..++.... -..++++++..|.......++..+... +. .....+-.|.
T Consensus 81 ~~g~ha~llVi~~~r~t~~~~~~l~~l~~~FG~~~--~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R~~ 158 (212)
T PF04548_consen 81 SPGPHAFLLVIPLGRFTEEDREVLELLQEIFGEEI--WKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGGRYH 158 (212)
T ss_dssp TT-ESEEEEEEETTB-SHHHHHHHHHHHHHHCGGG--GGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTCEE
T ss_pred cCCCeEEEEEEecCcchHHHHHHHHHHHHHccHHH--HhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCCEEE
Confidence 45689999999997221 12223334444443321 135888889888776555333222110 00 0011111344
Q ss_pred Eeecc------CCCCHHHHHHHHHhhhhc
Q 030233 157 SCSAI------SGQGLYEGLDWLSNNISV 179 (181)
Q Consensus 157 ~~Sa~------~~~~i~~l~~~i~~~~~~ 179 (181)
..+.. ....+.+|++.+-+.+.+
T Consensus 159 ~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~ 187 (212)
T PF04548_consen 159 VFNNKTKDKEKDESQVSELLEKIEEMVQE 187 (212)
T ss_dssp ECCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeccccchhhhHHHHHHHHHHHHHHHHH
Confidence 44433 345788888888777654
No 287
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.51 E-value=3.3e-13 Score=92.74 Aligned_cols=101 Identities=16% Similarity=0.178 Sum_probs=64.0
Q ss_pred eEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeE--EEEEeCCCCCCC--CCH
Q 030233 61 KSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAAL--LVFANKQDLPNV--MPT 136 (181)
Q Consensus 61 ~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pi--ilv~nK~D~~~~--~~~ 136 (181)
....++++.|..-.....+. -++.++.|+|+.+.++... .... .+.. ++++||+|+.+. .+.
T Consensus 92 ~D~iiIEt~G~~l~~~~~~~---l~~~~i~vvD~~~~~~~~~---~~~~--------qi~~ad~~~~~k~d~~~~~~~~~ 157 (199)
T TIGR00101 92 LEMVFIESGGDNLSATFSPE---LADLTIFVIDVAAGDKIPR---KGGP--------GITRSDLLVINKIDLAPMVGADL 157 (199)
T ss_pred CCEEEEECCCCCcccccchh---hhCcEEEEEEcchhhhhhh---hhHh--------HhhhccEEEEEhhhccccccccH
Confidence 46677788883221111111 1578999999976544321 1111 2223 899999999853 334
Q ss_pred HHHHhhhCccccCCccEEEEEeeccCCCCHHHHHHHHHhhhh
Q 030233 137 AEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNIS 178 (181)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~ 178 (181)
+.+.+..... ....+++++||++|+|++++|+++.+++.
T Consensus 158 ~~~~~~~~~~---~~~~~i~~~Sa~~g~gi~el~~~i~~~~~ 196 (199)
T TIGR00101 158 GVMERDAKKM---RGEKPFIFTNLKTKEGLDTVIDWIEHYAL 196 (199)
T ss_pred HHHHHHHHHh---CCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 4434333322 34568999999999999999999998764
No 288
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.49 E-value=1.6e-14 Score=101.59 Aligned_cols=113 Identities=16% Similarity=0.085 Sum_probs=58.6
Q ss_pred EEEEEEcCCChhhHHHHHhhc--------cCCCEEEEEEECCCcc---cHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCC
Q 030233 62 SFCVWDVGGQNKIRALWRHYF--------RDTLGLTFVVDSSDRE---RISEARNELHQILSDNELSNAALLVFANKQDL 130 (181)
Q Consensus 62 ~~~i~d~~g~~~~~~~~~~~~--------~~~d~ii~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~ 130 (181)
.+.++|||||.++...+.... ...-++++++|..... .|-...-.-...+.+ .+.|.|.|+||+|+
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~---~~lP~vnvlsK~Dl 168 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLR---LELPHVNVLSKIDL 168 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHH---HTSEEEEEE--GGG
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhh---CCCCEEEeeeccCc
Confidence 799999999987665443332 3456889999986433 232221111111111 37999999999999
Q ss_pred CCCCC---------H-----------HHHHhhhCccccCCccE-EEEEeeccCCCCHHHHHHHHHhhh
Q 030233 131 PNVMP---------T-----------AEVADKLELYSLGQRRW-SIQSCSAISGQGLYEGLDWLSNNI 177 (181)
Q Consensus 131 ~~~~~---------~-----------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~i~~~~ 177 (181)
.+... . ..+.+.+.......... .++.+|+.+++++++++..+.+..
T Consensus 169 ~~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 169 LSKYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp S-HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred ccchhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 86220 0 11111111111112233 799999999999999999988764
No 289
>PTZ00416 elongation factor 2; Provisional
Probab=99.47 E-value=7.6e-13 Score=108.07 Aligned_cols=112 Identities=20% Similarity=0.148 Sum_probs=77.9
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhcCC--cc----------c-------ccCccceeEEEEEEC----------CeEEEE
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKLGE--IV----------T-------TTPTIGFNVEAVEYK----------NKSFCV 65 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~~~--~~----------~-------~~~~~~~~~~~~~~~----------~~~~~i 65 (181)
.+.-+|+++|+.++|||||+++++... .. + ...|+......+.+. +..+.+
T Consensus 17 ~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~l 96 (836)
T PTZ00416 17 DQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINL 96 (836)
T ss_pred cCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEE
Confidence 344489999999999999999998632 10 0 011111111122332 567999
Q ss_pred EEcCCChhhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCC
Q 030233 66 WDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLP 131 (181)
Q Consensus 66 ~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~ 131 (181)
+||||+.+|.......++.+|++|+|+|+.+.-.-+ ....+..+.. .++|+++++||+|+.
T Consensus 97 iDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~-t~~~~~~~~~----~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 97 IDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQ-TETVLRQALQ----ERIRPVLFINKVDRA 157 (836)
T ss_pred EcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCcc-HHHHHHHHHH----cCCCEEEEEEChhhh
Confidence 999999999988889999999999999997642222 2233333333 368999999999986
No 290
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.46 E-value=2.3e-13 Score=103.47 Aligned_cols=156 Identities=21% Similarity=0.203 Sum_probs=104.0
Q ss_pred hCCCCccEEEEEcCCCCChHHHHHhhhcCC----------------------c------------ccccCccceeEEEEE
Q 030233 12 FFPQCRIKLLMVGLDASGKTTILYKMKLGE----------------------I------------VTTTPTIGFNVEAVE 57 (181)
Q Consensus 12 ~~~~~~~~i~~~G~~~~GKssl~~~~~~~~----------------------~------------~~~~~~~~~~~~~~~ 57 (181)
..++..++++++|+..+|||||+-+++..- + ...+.|+.+....++
T Consensus 172 ~~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fe 251 (603)
T KOG0458|consen 172 SDPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFE 251 (603)
T ss_pred cCCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEe
Confidence 345567899999999999999999886410 0 011224444444555
Q ss_pred ECCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCCc---ccHHHH--HHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 030233 58 YKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDR---ERISEA--RNELHQILSDNELSNAALLVFANKQDLPN 132 (181)
Q Consensus 58 ~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~---~s~~~~--~~~~~~~~~~~~~~~~piilv~nK~D~~~ 132 (181)
-....+.+.|+||+.+|-.....-...+|+.++|+|++-. .+|+.. ......+++. ..-.-+|+++||+|+.+
T Consensus 252 s~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~--Lgi~qlivaiNKmD~V~ 329 (603)
T KOG0458|consen 252 SKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRS--LGISQLIVAINKMDLVS 329 (603)
T ss_pred cCceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHH--cCcceEEEEeecccccC
Confidence 5778999999999999988888888899999999999742 222211 1112222222 13466899999999876
Q ss_pred C--CCHHHHHhhh-----CccccCCccEEEEEeeccCCCCHHHH
Q 030233 133 V--MPTAEVADKL-----ELYSLGQRRWSIQSCSAISGQGLYEG 169 (181)
Q Consensus 133 ~--~~~~~~~~~~-----~~~~~~~~~~~~~~~Sa~~~~~i~~l 169 (181)
= ...+++...+ ....+...++.|++||+..|+|+-..
T Consensus 330 Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~ 373 (603)
T KOG0458|consen 330 WSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI 373 (603)
T ss_pred ccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence 2 2233333333 23334556778999999999997543
No 291
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.45 E-value=8.1e-13 Score=108.06 Aligned_cols=113 Identities=18% Similarity=0.100 Sum_probs=78.9
Q ss_pred CCCccEEEEEcCCCCChHHHHHhhhcCCc--c----------c-------ccCccceeEEEEEE----------------
Q 030233 14 PQCRIKLLMVGLDASGKTTILYKMKLGEI--V----------T-------TTPTIGFNVEAVEY---------------- 58 (181)
Q Consensus 14 ~~~~~~i~~~G~~~~GKssl~~~~~~~~~--~----------~-------~~~~~~~~~~~~~~---------------- 58 (181)
+.+--+|+++|+.++|||||+.+++...- . + ...|+......+.+
T Consensus 16 ~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (843)
T PLN00116 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDG 95 (843)
T ss_pred ccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCC
Confidence 34445799999999999999999975431 0 0 01122211222222
Q ss_pred CCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCC
Q 030233 59 KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLP 131 (181)
Q Consensus 59 ~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~ 131 (181)
.+..+.++||||+.+|.......++.+|++|+|+|+.+.-.... ...+..+.. .++|+++++||+|..
T Consensus 96 ~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t-~~~~~~~~~----~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-ETVLRQALG----ERIRPVLTVNKMDRC 163 (843)
T ss_pred CceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccH-HHHHHHHHH----CCCCEEEEEECCccc
Confidence 25778999999999999999999999999999999975422222 223333333 378999999999987
No 292
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.45 E-value=2.2e-12 Score=92.89 Aligned_cols=159 Identities=21% Similarity=0.148 Sum_probs=99.3
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhcCC----cc------cccCccc--eeEEEEEE-------CCeEEEEEEcCCChhhH
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKLGE----IV------TTTPTIG--FNVEAVEY-------KNKSFCVWDVGGQNKIR 75 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~~~----~~------~~~~~~~--~~~~~~~~-------~~~~~~i~d~~g~~~~~ 75 (181)
.-++++.++|+..||||||.+++..-. +. +...|++ +....+.. +..++.+.|.||+...-
T Consensus 5 p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLI 84 (522)
T KOG0461|consen 5 PSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLI 84 (522)
T ss_pred CceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHH
Confidence 346899999999999999999996532 11 1122222 22222211 45688999999987766
Q ss_pred HHHHhhccCCCEEEEEEECCCcccHHHH-HHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH----HHHHhhhC--cccc
Q 030233 76 ALWRHYFRDTLGLTFVVDSSDRERISEA-RNELHQILSDNELSNAALLVFANKQDLPNVMPT----AEVADKLE--LYSL 148 (181)
Q Consensus 76 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~----~~~~~~~~--~~~~ 148 (181)
+.......-.|..++|+|+.....-+.. ...+-.+ -....++|+||.|+..+... ++..+.+. ++..
T Consensus 85 RtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~------~c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t 158 (522)
T KOG0461|consen 85 RTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGEL------LCKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLEST 158 (522)
T ss_pred HHHHhhhheeeeeeEEEehhcccccccchhhhhhhh------hccceEEEEeccccccchhhhhHHHHHHHHHHHHHHhc
Confidence 6665565667999999999753211111 1112222 23456888999998765322 22222221 1111
Q ss_pred C-CccEEEEEeeccCC----CCHHHHHHHHHhhhhc
Q 030233 149 G-QRRWSIQSCSAISG----QGLYEGLDWLSNNISV 179 (181)
Q Consensus 149 ~-~~~~~~~~~Sa~~~----~~i~~l~~~i~~~~~~ 179 (181)
+ ..+.+++++||..| +++.++.+.+..++.+
T Consensus 159 ~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~ 194 (522)
T KOG0461|consen 159 GFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFE 194 (522)
T ss_pred CcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcC
Confidence 2 23579999999999 8888888888777654
No 293
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.44 E-value=1.5e-12 Score=93.79 Aligned_cols=121 Identities=14% Similarity=0.216 Sum_probs=71.2
Q ss_pred ccEEEEEcCCCCChHHHHHhhhcCCccccc-----------CccceeEEEEEE----CCeEEEEEEcCCChh--------
Q 030233 17 RIKLLMVGLDASGKTTILYKMKLGEIVTTT-----------PTIGFNVEAVEY----KNKSFCVWDVGGQNK-------- 73 (181)
Q Consensus 17 ~~~i~~~G~~~~GKssl~~~~~~~~~~~~~-----------~~~~~~~~~~~~----~~~~~~i~d~~g~~~-------- 73 (181)
+++|+|+|.+|+|||||+|.|++....... .+..+....... ....+.++||||..+
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~ 83 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW 83 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence 689999999999999999999987632221 222233333333 335789999999321
Q ss_pred ----------hHHHHHhh-------c--cCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC
Q 030233 74 ----------IRALWRHY-------F--RDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVM 134 (181)
Q Consensus 74 ----------~~~~~~~~-------~--~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~ 134 (181)
+....... . ...|+++|.++.+. .++...+..+.+-+.. .+++|.|+.|+|.....
T Consensus 84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~-~~L~~~Di~~mk~Ls~----~vNvIPvIaKaD~lt~~ 158 (281)
T PF00735_consen 84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTG-HGLKPLDIEFMKRLSK----RVNVIPVIAKADTLTPE 158 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTS-SSS-HHHHHHHHHHTT----TSEEEEEESTGGGS-HH
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCC-ccchHHHHHHHHHhcc----cccEEeEEecccccCHH
Confidence 11110000 0 13689999999874 4455555544444443 68999999999987644
Q ss_pred CHHHHHhh
Q 030233 135 PTAEVADK 142 (181)
Q Consensus 135 ~~~~~~~~ 142 (181)
+...++..
T Consensus 159 el~~~k~~ 166 (281)
T PF00735_consen 159 ELQAFKQR 166 (281)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44333443
No 294
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.43 E-value=1.8e-12 Score=92.47 Aligned_cols=160 Identities=16% Similarity=0.099 Sum_probs=105.7
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhcCCccccc------Cc--ccee---EE---------------EEEE------CCeE
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKLGEIVTTT------PT--IGFN---VE---------------AVEY------KNKS 62 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~------~~--~~~~---~~---------------~~~~------~~~~ 62 (181)
+..++|.++|+...|||||...+.|--....+ .+ +|+. .+ .+.. --..
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~ 87 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR 87 (415)
T ss_pred CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence 56899999999999999999999874322110 00 1100 00 0110 1147
Q ss_pred EEEEEcCCChhhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC----HHH
Q 030233 63 FCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMP----TAE 138 (181)
Q Consensus 63 ~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~----~~~ 138 (181)
+++.|.|||+-.-+....-..--|+.++|++++.+..-.+..+-+..+--. .-..+|++=||.|+...+. .++
T Consensus 88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIi---gik~iiIvQNKIDlV~~E~AlE~y~q 164 (415)
T COG5257 88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEII---GIKNIIIVQNKIDLVSRERALENYEQ 164 (415)
T ss_pred EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhh---ccceEEEEecccceecHHHHHHHHHH
Confidence 899999999876555444444469999999999865444444433332111 2356899999999987432 344
Q ss_pred HHhhhCccccCCccEEEEEeeccCCCCHHHHHHHHHhhhhc
Q 030233 139 VADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNISV 179 (181)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 179 (181)
++++..-. -..+.+++++||.++.||+-+++.|.+.+..
T Consensus 165 Ik~FvkGt--~Ae~aPIIPiSA~~~~NIDal~e~i~~~Ipt 203 (415)
T COG5257 165 IKEFVKGT--VAENAPIIPISAQHKANIDALIEAIEKYIPT 203 (415)
T ss_pred HHHHhccc--ccCCCceeeehhhhccCHHHHHHHHHHhCCC
Confidence 44444322 2356689999999999999999999998764
No 295
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.43 E-value=8.5e-13 Score=89.91 Aligned_cols=155 Identities=20% Similarity=0.258 Sum_probs=102.8
Q ss_pred ccEEEEEcCCCCChHHHHHhhhcCC----cccccCccceeEEEEEE-CCeEEEEEEcCCChhhHH-----HHHhhccCCC
Q 030233 17 RIKLLMVGLDASGKTTILYKMKLGE----IVTTTPTIGFNVEAVEY-KNKSFCVWDVGGQNKIRA-----LWRHYFRDTL 86 (181)
Q Consensus 17 ~~~i~~~G~~~~GKssl~~~~~~~~----~~~~~~~~~~~~~~~~~-~~~~~~i~d~~g~~~~~~-----~~~~~~~~~d 86 (181)
.-||+++|.+|+||||+=.-+..+. ....++|+++....+.+ .+..+.+||.+|++.+-. .....++..+
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~fmen~~~~q~d~iF~nV~ 83 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEEFMENYLSSQEDNIFRNVQ 83 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhhheeehhccCCcHHHHHHHHhhcchhhheehe
Confidence 3579999999999999866555433 44556677776666655 568999999999985432 3556778899
Q ss_pred EEEEEEECCCcc---cHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCc---cccCCccEEEEEeec
Q 030233 87 GLTFVVDSSDRE---RISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLEL---YSLGQRRWSIQSCSA 160 (181)
Q Consensus 87 ~ii~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~Sa 160 (181)
++++|||+...+ .+......++.+++. .+...+....+|+|+......+.+-..... ..-......++++|.
T Consensus 84 vli~vFDves~e~~~D~~~yqk~Le~ll~~--SP~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f~Tsi 161 (295)
T KOG3886|consen 84 VLIYVFDVESREMEKDFHYYQKCLEALLQN--SPEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCFPTSI 161 (295)
T ss_pred eeeeeeeccchhhhhhHHHHHHHHHHHHhc--CCcceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccccccccch
Confidence 999999998653 455556666666654 377889999999999875544433222110 001223456788876
Q ss_pred cCCCCHHHHHHHHH
Q 030233 161 ISGQGLYEGLDWLS 174 (181)
Q Consensus 161 ~~~~~i~~l~~~i~ 174 (181)
.+ +++-+.|..+.
T Consensus 162 wD-etl~KAWS~iv 174 (295)
T KOG3886|consen 162 WD-ETLYKAWSSIV 174 (295)
T ss_pred hh-HHHHHHHHHHH
Confidence 55 34444444333
No 296
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.43 E-value=3.3e-12 Score=94.44 Aligned_cols=112 Identities=19% Similarity=0.247 Sum_probs=82.1
Q ss_pred EEEEEcCCCCChHHHHHhhhc--CCccc-----------------------ccCccceeEEEEEECCeEEEEEEcCCChh
Q 030233 19 KLLMVGLDASGKTTILYKMKL--GEIVT-----------------------TTPTIGFNVEAVEYKNKSFCVWDVGGQNK 73 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~--~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~i~d~~g~~~ 73 (181)
..+++-+|.+|||||-..++- +.+.. ....+.....++.|.+..+.+.|||||++
T Consensus 14 TFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPGHeD 93 (528)
T COG4108 14 TFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPGHED 93 (528)
T ss_pred ceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCCccc
Confidence 459999999999999988752 21110 11222344556777999999999999999
Q ss_pred hHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC
Q 030233 74 IRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMP 135 (181)
Q Consensus 74 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~ 135 (181)
|..-+-.-+.-+|..++|+|+.. +++.-...+..+.+. .++||+=++||.|.....+
T Consensus 94 FSEDTYRtLtAvDsAvMVIDaAK--GiE~qT~KLfeVcrl---R~iPI~TFiNKlDR~~rdP 150 (528)
T COG4108 94 FSEDTYRTLTAVDSAVMVIDAAK--GIEPQTLKLFEVCRL---RDIPIFTFINKLDREGRDP 150 (528)
T ss_pred cchhHHHHHHhhheeeEEEeccc--CccHHHHHHHHHHhh---cCCceEEEeeccccccCCh
Confidence 99888888888999999999964 344444444444444 5899999999999865443
No 297
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.41 E-value=7.6e-13 Score=93.79 Aligned_cols=96 Identities=19% Similarity=0.142 Sum_probs=72.8
Q ss_pred hhhHHHHHhhccCCCEEEEEEECCCcc-cHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHH-HHHhhhCccccC
Q 030233 72 NKIRALWRHYFRDTLGLTFVVDSSDRE-RISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTA-EVADKLELYSLG 149 (181)
Q Consensus 72 ~~~~~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~-~~~~~~~~~~~~ 149 (181)
+++..+...++.++|++++|+|+.++. ++..+..|+..+. . .++|+++|+||+|+.+..... +..+.+ .
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~-~---~~i~~vIV~NK~DL~~~~~~~~~~~~~~-----~ 94 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAE-A---QNIEPIIVLNKIDLLDDEDMEKEQLDIY-----R 94 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHH-H---CCCCEEEEEECcccCCCHHHHHHHHHHH-----H
Confidence 456666667899999999999999877 8999888887553 2 579999999999996532221 122222 2
Q ss_pred CccEEEEEeeccCCCCHHHHHHHHHhh
Q 030233 150 QRRWSIQSCSAISGQGLYEGLDWLSNN 176 (181)
Q Consensus 150 ~~~~~~~~~Sa~~~~~i~~l~~~i~~~ 176 (181)
..+.+++++||++|+|++++|+.+.+.
T Consensus 95 ~~g~~v~~~SAktg~gi~eLf~~l~~~ 121 (245)
T TIGR00157 95 NIGYQVLMTSSKNQDGLKELIEALQNR 121 (245)
T ss_pred HCCCeEEEEecCCchhHHHHHhhhcCC
Confidence 245689999999999999999988754
No 298
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=99.39 E-value=1.7e-12 Score=90.55 Aligned_cols=149 Identities=15% Similarity=0.191 Sum_probs=89.6
Q ss_pred CccEEEEEcCCCCChHHHHHhhhcC------C-----cccccC------------------ccceeEEEE----------
Q 030233 16 CRIKLLMVGLDASGKTTILYKMKLG------E-----IVTTTP------------------TIGFNVEAV---------- 56 (181)
Q Consensus 16 ~~~~i~~~G~~~~GKssl~~~~~~~------~-----~~~~~~------------------~~~~~~~~~---------- 56 (181)
+.+.|++.|+||+|||||++.+... . ..+.+| -.++..+..
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGls 107 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGLS 107 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHHH
T ss_pred CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCcc
Confidence 5789999999999999999998641 1 001111 111111111
Q ss_pred ----------EECCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEe
Q 030233 57 ----------EYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFAN 126 (181)
Q Consensus 57 ----------~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~n 126 (181)
...++.+.+++|.|-.+.... ...-+|.+++|.-..-.+.++.++.-+.++ .=++|+|
T Consensus 108 ~~t~~~v~ll~aaG~D~IiiETVGvGQsE~~---I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEi---------aDi~vVN 175 (266)
T PF03308_consen 108 RATRDAVRLLDAAGFDVIIIETVGVGQSEVD---IADMADTVVLVLVPGLGDEIQAIKAGIMEI---------ADIFVVN 175 (266)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEEESSSTHHHH---HHTTSSEEEEEEESSTCCCCCTB-TTHHHH----------SEEEEE
T ss_pred HhHHHHHHHHHHcCCCEEEEeCCCCCccHHH---HHHhcCeEEEEecCCCccHHHHHhhhhhhh---------ccEEEEe
Confidence 114578999999985443332 344589999999887666666655544444 1289999
Q ss_pred CCCCCCCCC-HHHHHhhhCccc--cCCccEEEEEeeccCCCCHHHHHHHHHhh
Q 030233 127 KQDLPNVMP-TAEVADKLELYS--LGQRRWSIQSCSAISGQGLYEGLDWLSNN 176 (181)
Q Consensus 127 K~D~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~ 176 (181)
|+|...... ..++...+.+.. ...+..+++.+||.+++|++++++.|.+.
T Consensus 176 KaD~~gA~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~ 228 (266)
T PF03308_consen 176 KADRPGADRTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEH 228 (266)
T ss_dssp --SHHHHHHHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence 999543211 223344333221 23456799999999999999999998875
No 299
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.39 E-value=1.5e-12 Score=82.89 Aligned_cols=113 Identities=19% Similarity=0.114 Sum_probs=78.0
Q ss_pred cEEEEEcCCCCChHHHHHhhhcCCcccc-c-CccceeEEEEEECCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECC
Q 030233 18 IKLLMVGLDASGKTTILYKMKLGEIVTT-T-PTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSS 95 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~ 95 (181)
++++++|+.|+|||+|+.++....+... . ++.+ +........+.++.++.|++..
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~-----------------------~~~~~~~~~~s~~~~~~v~~~~ 57 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG-----------------------IDVYDPTSYESFDVVLQCWRVD 57 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh-----------------------hhhccccccCCCCEEEEEEEcc
Confidence 4899999999999999999976665421 1 2222 3333445667889999999999
Q ss_pred CcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCCCHH
Q 030233 96 DRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLY 167 (181)
Q Consensus 96 ~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (181)
++++++.. |...++.. ...++|.++++||.|+.... .+.... ...++++|+++|+|+.
T Consensus 58 ~~~s~~~~--~~~~i~~~-~k~dl~~~~~~nk~dl~~~~---~~~~~~--------~~~~~~~s~~~~~~~~ 115 (124)
T smart00010 58 DRDSADNK--NVPEVLVG-NKSDLPILVGGNRDVLEEER---QVATEE--------GLEFAETSAKTPEEGE 115 (124)
T ss_pred CHHHHHHH--hHHHHHhc-CCCCCcEEEEeechhhHhhC---cCCHHH--------HHHHHHHhCCCcchhh
Confidence 98888655 55555443 33578999999999974321 111111 1136788999999985
No 300
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.38 E-value=1.2e-11 Score=90.35 Aligned_cols=107 Identities=14% Similarity=0.036 Sum_probs=65.9
Q ss_pred CCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHH
Q 030233 59 KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAE 138 (181)
Q Consensus 59 ~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~ 138 (181)
.+..+.+.||+|..... ......+|.++++.+.. +-+++......+ ...|.++++||+|+........
T Consensus 125 ~g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~---~~~el~~~~~~l------~~~~~ivv~NK~Dl~~~~~~~~ 192 (300)
T TIGR00750 125 AGYDVIIVETVGVGQSE---VDIANMADTFVVVTIPG---TGDDLQGIKAGL------MEIADIYVVNKADGEGATNVTI 192 (300)
T ss_pred CCCCEEEEeCCCCchhh---hHHHHhhceEEEEecCC---ccHHHHHHHHHH------hhhccEEEEEcccccchhHHHH
Confidence 35789999999954222 23456678888885443 233333333333 2466799999999876433222
Q ss_pred HHhhh----Cc--cccCCccEEEEEeeccCCCCHHHHHHHHHhhh
Q 030233 139 VADKL----EL--YSLGQRRWSIQSCSAISGQGLYEGLDWLSNNI 177 (181)
Q Consensus 139 ~~~~~----~~--~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~ 177 (181)
....+ .. .....+..+++++||++|+|++++++++.+..
T Consensus 193 ~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~ 237 (300)
T TIGR00750 193 ARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHK 237 (300)
T ss_pred HHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHH
Confidence 11111 11 00012234699999999999999999998763
No 301
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.37 E-value=3.7e-12 Score=103.01 Aligned_cols=110 Identities=21% Similarity=0.159 Sum_probs=75.4
Q ss_pred cEEEEEcCCCCChHHHHHhhhcCC--ccc-----------------ccCccceeEEEEEE----CCeEEEEEEcCCChhh
Q 030233 18 IKLLMVGLDASGKTTILYKMKLGE--IVT-----------------TTPTIGFNVEAVEY----KNKSFCVWDVGGQNKI 74 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~~~--~~~-----------------~~~~~~~~~~~~~~----~~~~~~i~d~~g~~~~ 74 (181)
-+|+++|+.++|||||+.+++... ... ...|+......+.+ .+..+.++||||+.++
T Consensus 21 Rni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~df 100 (731)
T PRK07560 21 RNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHVDF 100 (731)
T ss_pred cEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCccCh
Confidence 369999999999999999997532 110 01122222222222 4678999999999999
Q ss_pred HHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 030233 75 RALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPN 132 (181)
Q Consensus 75 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~ 132 (181)
.......++.+|++++|+|+...-.- .....+...... +.|.|+++||+|...
T Consensus 101 ~~~~~~~l~~~D~avlVvda~~g~~~-~t~~~~~~~~~~----~~~~iv~iNK~D~~~ 153 (731)
T PRK07560 101 GGDVTRAMRAVDGAIVVVDAVEGVMP-QTETVLRQALRE----RVKPVLFINKVDRLI 153 (731)
T ss_pred HHHHHHHHHhcCEEEEEEECCCCCCc-cHHHHHHHHHHc----CCCeEEEEECchhhc
Confidence 88888899999999999998754222 222333333232 467799999999763
No 302
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.36 E-value=6.4e-12 Score=92.85 Aligned_cols=159 Identities=13% Similarity=0.133 Sum_probs=81.1
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccc---eeEE--EEEEC-CeEEEEEEcCCChhhHHHHHh-----hc
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIG---FNVE--AVEYK-NKSFCVWDVGGQNKIRALWRH-----YF 82 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~---~~~~--~~~~~-~~~~~i~d~~g~~~~~~~~~~-----~~ 82 (181)
..+++|+|+|.+|+|||||||.+.|-... +.....| ++.. .+... .-++.+||.||...-...... .+
T Consensus 33 ~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~pnv~lWDlPG~gt~~f~~~~Yl~~~~~ 112 (376)
T PF05049_consen 33 NAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKFPNVTLWDLPGIGTPNFPPEEYLKEVKF 112 (376)
T ss_dssp H--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS-TTEEEEEE--GGGSS--HHHHHHHTTG
T ss_pred cCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCCCCCeEEeCCCCCCCCCCHHHHHHHccc
Confidence 35789999999999999999999763211 1111111 1111 22222 246999999995332222222 34
Q ss_pred cCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCC--CC-------CCCHH----HHHhhhC--ccc
Q 030233 83 RDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDL--PN-------VMPTA----EVADKLE--LYS 147 (181)
Q Consensus 83 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~--~~-------~~~~~----~~~~~~~--~~~ 147 (181)
...|.+|++.+. .|....-++...++. .+.|+.+|-+|+|. .+ .-..+ ++++... +..
T Consensus 113 ~~yD~fiii~s~----rf~~ndv~La~~i~~---~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k 185 (376)
T PF05049_consen 113 YRYDFFIIISSE----RFTENDVQLAKEIQR---MGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQK 185 (376)
T ss_dssp GG-SEEEEEESS----S--HHHHHHHHHHHH---TT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHC
T ss_pred cccCEEEEEeCC----CCchhhHHHHHHHHH---cCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHH
Confidence 467888887764 366666666555555 58999999999995 11 11111 2222211 111
Q ss_pred cCCccEEEEEeeccCC--CCHHHHHHHHHhhhhcc
Q 030233 148 LGQRRWSIQSCSAISG--QGLYEGLDWLSNNISVK 180 (181)
Q Consensus 148 ~~~~~~~~~~~Sa~~~--~~i~~l~~~i~~~~~~~ 180 (181)
.+-..-++|-+|+.+- .++..|.+.+.+.+...
T Consensus 186 ~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~ 220 (376)
T PF05049_consen 186 AGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAH 220 (376)
T ss_dssp TT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GG
T ss_pred cCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHH
Confidence 1223446888988764 46888888888776543
No 303
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=99.36 E-value=1.3e-11 Score=88.32 Aligned_cols=161 Identities=14% Similarity=0.094 Sum_probs=104.1
Q ss_pred ccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEE----CCeEEEEEEcCCChhhHHHHHhhccCC----CEE
Q 030233 17 RIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEY----KNKSFCVWDVGGQNKIRALWRHYFRDT----LGL 88 (181)
Q Consensus 17 ~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~d~~g~~~~~~~~~~~~~~~----d~i 88 (181)
.-+|+++|+.++|||||+.++.+.+.......+++.+-.+.- ...++.+|-..|+.....+....+... ..+
T Consensus 52 gk~VlvlGdn~sGKtsLi~klqg~e~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~aetlv 131 (473)
T KOG3905|consen 52 GKNVLVLGDNGSGKTSLISKLQGSETVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAETLV 131 (473)
T ss_pred CCeEEEEccCCCchhHHHHHhhcccccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccceEE
Confidence 468999999999999999999988755545544444444333 235788999999877776665555432 467
Q ss_pred EEEEECCCcccH-HHHHHHHHHHHcCCC----------------------------------------------------
Q 030233 89 TFVVDSSDRERI-SEARNELHQILSDNE---------------------------------------------------- 115 (181)
Q Consensus 89 i~v~d~~~~~s~-~~~~~~~~~~~~~~~---------------------------------------------------- 115 (181)
|++.|+++|.+. +.+..|..-+.++.+
T Consensus 132 iltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~llP 211 (473)
T KOG3905|consen 132 ILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEHVLLP 211 (473)
T ss_pred EEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCccccccccc
Confidence 888999998433 333334322221110
Q ss_pred --------CCCCeEEEEEeCCCCCC----CCCHH-----HHHhhhCccccCCccEEEEEeeccCCCCHHHHHHHHHhhhh
Q 030233 116 --------LSNAALLVFANKQDLPN----VMPTA-----EVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNIS 178 (181)
Q Consensus 116 --------~~~~piilv~nK~D~~~----~~~~~-----~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~ 178 (181)
..++|+++|.+|||... +.+.. .+...+.. +.-..+...+.+|+++..|++-+.++|.++..
T Consensus 212 L~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRk-FCLr~GaaLiyTSvKE~KNidllyKYivhr~y 290 (473)
T KOG3905|consen 212 LGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRK-FCLRYGAALIYTSVKETKNIDLLYKYIVHRSY 290 (473)
T ss_pred cCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHH-HHHHcCceeEEeecccccchHHHHHHHHHHhc
Confidence 02349999999999732 11111 11111111 11235668999999999999999999998754
No 304
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.35 E-value=6.4e-12 Score=98.12 Aligned_cols=155 Identities=23% Similarity=0.187 Sum_probs=103.8
Q ss_pred CccEEEEEcCCCCChHHHHHhhhcCCccc-----ccCccceeEEEEE----------------ECCeEEEEEEcCCChhh
Q 030233 16 CRIKLLMVGLDASGKTTILYKMKLGEIVT-----TTPTIGFNVEAVE----------------YKNKSFCVWDVGGQNKI 74 (181)
Q Consensus 16 ~~~~i~~~G~~~~GKssl~~~~~~~~~~~-----~~~~~~~~~~~~~----------------~~~~~~~i~d~~g~~~~ 74 (181)
+.+-||++|+..+|||-|+..+-+.+... ....+|-++.... +.--.+.++||||++.|
T Consensus 474 RSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsF 553 (1064)
T KOG1144|consen 474 RSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESF 553 (1064)
T ss_pred CCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhh
Confidence 45679999999999999999987654221 1222333333221 12235789999999999
Q ss_pred HHHHHhhccCCCEEEEEEECCC---cccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC---CC-------------
Q 030233 75 RALWRHYFRDTLGLTFVVDSSD---RERISEARNELHQILSDNELSNAALLVFANKQDLPNV---MP------------- 135 (181)
Q Consensus 75 ~~~~~~~~~~~d~ii~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~---~~------------- 135 (181)
..++......||..|+|+|+.. +.++.. +..+ +. .+.|.|+++||+|.+.. ..
T Consensus 554 tnlRsrgsslC~~aIlvvdImhGlepqtiES----i~lL-R~---rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k 625 (1064)
T KOG1144|consen 554 TNLRSRGSSLCDLAILVVDIMHGLEPQTIES----INLL-RM---RKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKK 625 (1064)
T ss_pred hhhhhccccccceEEEEeehhccCCcchhHH----HHHH-Hh---cCCCeEEeehhhhhhcccccCCCchHHHHHHHhhH
Confidence 9999999999999999999964 333333 3333 33 47999999999997542 11
Q ss_pred --HHHHHhhhC-------cc------ccC----CccEEEEEeeccCCCCHHHHHHHHHhhhh
Q 030233 136 --TAEVADKLE-------LY------SLG----QRRWSIQSCSAISGQGLYEGLDWLSNNIS 178 (181)
Q Consensus 136 --~~~~~~~~~-------~~------~~~----~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~ 178 (181)
..++...+. .. ++. ..-+.++++||..|+||-+|+.+|.+..+
T Consensus 626 ~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQ 687 (1064)
T KOG1144|consen 626 DVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQ 687 (1064)
T ss_pred HHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHH
Confidence 011111110 00 011 13457899999999999999999887643
No 305
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.35 E-value=3.6e-11 Score=91.76 Aligned_cols=153 Identities=18% Similarity=0.141 Sum_probs=105.5
Q ss_pred CCCCccEEEEEcCCCCChHHHHHhhhcCCccc-----ccCccceeEEEEEECCeEEEEEEcCCChhhHHHHHhhccCCCE
Q 030233 13 FPQCRIKLLMVGLDASGKTTILYKMKLGEIVT-----TTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLG 87 (181)
Q Consensus 13 ~~~~~~~i~~~G~~~~GKssl~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ 87 (181)
...+-+++.++|+.++|||.+++++.++.+.. ..+...++...+..+...+.+.|.+-. ......+.- ..||+
T Consensus 421 ~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv 498 (625)
T KOG1707|consen 421 TDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDV 498 (625)
T ss_pred ccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeee
Confidence 34456899999999999999999999977544 122222333333345566777777754 222222222 56899
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC-----CCHHHHHhhhCccccCCccEEEEEeeccC
Q 030233 88 LTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV-----MPTAEVADKLELYSLGQRRWSIQSCSAIS 162 (181)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (181)
+.++||.+++.+|......+...... .+.|+++|+.|+|+.+. .+..+++..+... +....|.+.
T Consensus 499 ~~~~YDsS~p~sf~~~a~v~~~~~~~---~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~-------~P~~~S~~~ 568 (625)
T KOG1707|consen 499 ACLVYDSSNPRSFEYLAEVYNKYFDL---YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLP-------PPIHISSKT 568 (625)
T ss_pred EEEecccCCchHHHHHHHHHHHhhhc---cCCceEEEeeccccchhhhccCCChHHHHHhcCCC-------CCeeeccCC
Confidence 99999999999999998887766444 68999999999998653 3345666655443 355666664
Q ss_pred CCCHHHHHHHHHhhhh
Q 030233 163 GQGLYEGLDWLSNNIS 178 (181)
Q Consensus 163 ~~~i~~l~~~i~~~~~ 178 (181)
... .++|..|..+..
T Consensus 569 ~~s-~~lf~kL~~~A~ 583 (625)
T KOG1707|consen 569 LSS-NELFIKLATMAQ 583 (625)
T ss_pred CCC-chHHHHHHHhhh
Confidence 223 888888877653
No 306
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.35 E-value=4.2e-12 Score=88.04 Aligned_cols=150 Identities=15% Similarity=0.114 Sum_probs=83.3
Q ss_pred CCCCccEEEEEcCCCCChHHHHHhhhcCCcc--c-----ccC----------ccceeEEE--------------------
Q 030233 13 FPQCRIKLLMVGLDASGKTTILYKMKLGEIV--T-----TTP----------TIGFNVEA-------------------- 55 (181)
Q Consensus 13 ~~~~~~~i~~~G~~~~GKssl~~~~~~~~~~--~-----~~~----------~~~~~~~~-------------------- 55 (181)
.+.....|.++|..|+|||||+++++..... . ... ..+.....
T Consensus 18 ~~~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~ 97 (207)
T TIGR00073 18 DKHGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALED 97 (207)
T ss_pred hhcCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHH
Confidence 3445678999999999999999999754110 0 000 00000000
Q ss_pred EEECCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC
Q 030233 56 VEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMP 135 (181)
Q Consensus 56 ~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~ 135 (181)
....+..+.+.+|.|.-... ..+....+..+.|+|+.+.+.... . .... ...|.++++||+|+.+...
T Consensus 98 ~~~~~~d~IiIEt~G~l~~~---~~~~~~~~~~i~Vvd~~~~d~~~~--~-~~~~------~~~a~iiv~NK~Dl~~~~~ 165 (207)
T TIGR00073 98 LPLDDIDLLFIENVGNLVCP---ADFDLGEHMRVVLLSVTEGDDKPL--K-YPGM------FKEADLIVINKADLAEAVG 165 (207)
T ss_pred hccCCCCEEEEecCCCcCCC---cccccccCeEEEEEecCcccchhh--h-hHhH------HhhCCEEEEEHHHccccch
Confidence 00013466677777621100 011112344556777764432111 0 1111 2456799999999975322
Q ss_pred --HHHHHhhhCccccCCccEEEEEeeccCCCCHHHHHHHHHhhh
Q 030233 136 --TAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNI 177 (181)
Q Consensus 136 --~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~ 177 (181)
..++...+... ....+++++||++|+|++++++++.+..
T Consensus 166 ~~~~~~~~~l~~~---~~~~~i~~~Sa~~g~gv~~l~~~i~~~~ 206 (207)
T TIGR00073 166 FDVEKMKADAKKI---NPEAEIILMSLKTGEGLDEWLEFLEGQV 206 (207)
T ss_pred hhHHHHHHHHHHh---CCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 23333332211 2345799999999999999999998754
No 307
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=99.33 E-value=2.5e-11 Score=86.05 Aligned_cols=158 Identities=15% Similarity=0.221 Sum_probs=97.2
Q ss_pred HhhhhCCC--CccEEEEEcCCCCChHHHHHhhhcCC-----------cccccCc------------------cceeEEE-
Q 030233 8 LAKRFFPQ--CRIKLLMVGLDASGKTTILYKMKLGE-----------IVTTTPT------------------IGFNVEA- 55 (181)
Q Consensus 8 ~~~~~~~~--~~~~i~~~G~~~~GKssl~~~~~~~~-----------~~~~~~~------------------~~~~~~~- 55 (181)
+.+...|. +...|.+.|.||+|||||+..|...- ..+.+|. ++...+.
T Consensus 40 ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~ 119 (323)
T COG1703 40 LLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSS 119 (323)
T ss_pred HHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeec
Confidence 44444443 56799999999999999999885311 0011110 0111111
Q ss_pred -------------------EEECCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCC
Q 030233 56 -------------------VEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNEL 116 (181)
Q Consensus 56 -------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~ 116 (181)
+...++.+.|++|.|-.+..... ...+|.+++|.=..-.+.++.++.-+.++ .
T Consensus 120 ~srG~lGGlS~at~~~i~~ldAaG~DvIIVETVGvGQsev~I---~~~aDt~~~v~~pg~GD~~Q~iK~GimEi---a-- 191 (323)
T COG1703 120 PSRGTLGGLSRATREAIKLLDAAGYDVIIVETVGVGQSEVDI---ANMADTFLVVMIPGAGDDLQGIKAGIMEI---A-- 191 (323)
T ss_pred CCCccchhhhHHHHHHHHHHHhcCCCEEEEEecCCCcchhHH---hhhcceEEEEecCCCCcHHHHHHhhhhhh---h--
Confidence 11145789999999855544333 33489988887655455566555544433 2
Q ss_pred CCCeEEEEEeCCCCCCC-CCHHHHHhhhCcc----ccCCccEEEEEeeccCCCCHHHHHHHHHhhh
Q 030233 117 SNAALLVFANKQDLPNV-MPTAEVADKLELY----SLGQRRWSIQSCSAISGQGLYEGLDWLSNNI 177 (181)
Q Consensus 117 ~~~piilv~nK~D~~~~-~~~~~~~~~~~~~----~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~ 177 (181)
=|+|+||.|.... ....++...+... ....+..+++.+||.+|+|++++++.+.+..
T Consensus 192 ----Di~vINKaD~~~A~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~ 253 (323)
T COG1703 192 ----DIIVINKADRKGAEKAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHR 253 (323)
T ss_pred ----heeeEeccChhhHHHHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHH
Confidence 2899999995442 1223344444332 1244667899999999999999999988764
No 308
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.32 E-value=1.2e-11 Score=82.89 Aligned_cols=64 Identities=17% Similarity=0.220 Sum_probs=43.2
Q ss_pred eEEEEEEcCCChh----hHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCC
Q 030233 61 KSFCVWDVGGQNK----IRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQ 128 (181)
Q Consensus 61 ~~~~i~d~~g~~~----~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~ 128 (181)
..+.++||||... ....+..++..+|++++|.++....+-.....+.... .. ....+++|.||.
T Consensus 101 ~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~-~~---~~~~~i~V~nk~ 168 (168)
T PF00350_consen 101 RNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQML-DP---DKSRTIFVLNKA 168 (168)
T ss_dssp CSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHH-TT---TCSSEEEEEE-G
T ss_pred cceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHh-cC---CCCeEEEEEcCC
Confidence 4689999999532 2356778889999999999998754444333333333 33 244489999984
No 309
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.27 E-value=7.2e-11 Score=93.96 Aligned_cols=115 Identities=18% Similarity=0.121 Sum_probs=83.4
Q ss_pred CCCccEEEEEcCCCCChHHHHHhhhcCC--cc---c----------------ccCccceeEEEEEECC-eEEEEEEcCCC
Q 030233 14 PQCRIKLLMVGLDASGKTTILYKMKLGE--IV---T----------------TTPTIGFNVEAVEYKN-KSFCVWDVGGQ 71 (181)
Q Consensus 14 ~~~~~~i~~~G~~~~GKssl~~~~~~~~--~~---~----------------~~~~~~~~~~~~~~~~-~~~~i~d~~g~ 71 (181)
+++.-+|.++|+..+||||+..+++-.. .. . ...|+......+.+.+ ..++++|||||
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH 86 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH 86 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc
Confidence 3445579999999999999999996422 00 0 1223334444566774 99999999999
Q ss_pred hhhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 030233 72 NKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV 133 (181)
Q Consensus 72 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~ 133 (181)
-+|.......++-+|+++.|+|+...-..+ ....|..... .++|.++++||+|....
T Consensus 87 VDFt~EV~rslrvlDgavvVvdaveGV~~Q-TEtv~rqa~~----~~vp~i~fiNKmDR~~a 143 (697)
T COG0480 87 VDFTIEVERSLRVLDGAVVVVDAVEGVEPQ-TETVWRQADK----YGVPRILFVNKMDRLGA 143 (697)
T ss_pred cccHHHHHHHHHhhcceEEEEECCCCeeec-HHHHHHHHhh----cCCCeEEEEECcccccc
Confidence 999999999999999999999997532222 2223333322 47999999999998653
No 310
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=99.26 E-value=4.2e-11 Score=87.04 Aligned_cols=123 Identities=19% Similarity=0.260 Sum_probs=79.4
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhcCCccc-----------ccCccceeEEEEEE----CCeEEEEEEcCCChhh-----
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKLGEIVT-----------TTPTIGFNVEAVEY----KNKSFCVWDVGGQNKI----- 74 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~~-----------~~~~~~~~~~~~~~----~~~~~~i~d~~g~~~~----- 74 (181)
...++|+++|++|+|||||+|++++..... ..+++.+......+ -...+.++||||-.++
T Consensus 21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~ 100 (373)
T COG5019 21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSK 100 (373)
T ss_pred CCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccc
Confidence 347999999999999999999999874211 12333344443333 3368899999993211
Q ss_pred ---------HHHHHhhc--------------cCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCC
Q 030233 75 ---------RALWRHYF--------------RDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLP 131 (181)
Q Consensus 75 ---------~~~~~~~~--------------~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~ 131 (181)
.++...++ ..+|+++|.+..+ ..++..++-.+.+-+.. .+.+|.|+.|+|..
T Consensus 101 ~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Pt-gh~l~~~DIe~Mk~ls~----~vNlIPVI~KaD~l 175 (373)
T COG5019 101 CWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPT-GHGLKPLDIEAMKRLSK----RVNLIPVIAKADTL 175 (373)
T ss_pred cHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCC-CCCCCHHHHHHHHHHhc----ccCeeeeeeccccC
Confidence 11111111 1368999999877 46676666555444443 67899999999987
Q ss_pred CCCCHHHHHhh
Q 030233 132 NVMPTAEVADK 142 (181)
Q Consensus 132 ~~~~~~~~~~~ 142 (181)
-......+++.
T Consensus 176 T~~El~~~K~~ 186 (373)
T COG5019 176 TDDELAEFKER 186 (373)
T ss_pred CHHHHHHHHHH
Confidence 75444444443
No 311
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=99.26 E-value=7.4e-12 Score=89.64 Aligned_cols=56 Identities=29% Similarity=0.306 Sum_probs=40.4
Q ss_pred CeEEEEEeCCCCCCCC--CHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHHHHHHhhh
Q 030233 119 AALLVFANKQDLPNVM--PTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNI 177 (181)
Q Consensus 119 ~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~ 177 (181)
.+-++|+||+|+.+.. +.+.+...+.. .....+++++||++|+|++++.+||.++.
T Consensus 231 ~ADIVVLNKiDLl~~~~~dle~~~~~lr~---lnp~a~I~~vSA~tGeGld~L~~~L~~~~ 288 (290)
T PRK10463 231 AASLMLLNKVDLLPYLNFDVEKCIACARE---VNPEIEIILISATSGEGMDQWLNWLETQR 288 (290)
T ss_pred cCcEEEEEhHHcCcccHHHHHHHHHHHHh---hCCCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 4569999999997532 23333333322 23456899999999999999999998754
No 312
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.25 E-value=3.8e-10 Score=83.96 Aligned_cols=151 Identities=17% Similarity=0.150 Sum_probs=88.5
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhcC----Ccc-----------cccCccc---eeEEE-------EEE-----CCeEEE
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKLG----EIV-----------TTTPTIG---FNVEA-------VEY-----KNKSFC 64 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~~----~~~-----------~~~~~~~---~~~~~-------~~~-----~~~~~~ 64 (181)
..++.|+++|+.++|||||+|+|.+. +.. -..+..| +++.. +.+ ...++.
T Consensus 15 ~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vr 94 (492)
T TIGR02836 15 QGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVR 94 (492)
T ss_pred CCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEE
Confidence 46799999999999999999999987 322 1122223 22221 222 337899
Q ss_pred EEEcCCChh--------hHH---------------------HHHhhcc-CCCEEEEEE-ECC----CcccH-HHHHHHHH
Q 030233 65 VWDVGGQNK--------IRA---------------------LWRHYFR-DTLGLTFVV-DSS----DRERI-SEARNELH 108 (181)
Q Consensus 65 i~d~~g~~~--------~~~---------------------~~~~~~~-~~d~ii~v~-d~~----~~~s~-~~~~~~~~ 108 (181)
++||+|... -.. -+...+. +++..++|. |.+ .++.+ .....++.
T Consensus 95 lIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~ 174 (492)
T TIGR02836 95 LVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIE 174 (492)
T ss_pred EEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHH
Confidence 999999221 000 1334455 789988888 764 12233 33445555
Q ss_pred HHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeecc--CCCCHHHHHHHHH
Q 030233 109 QILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAI--SGQGLYEGLDWLS 174 (181)
Q Consensus 109 ~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~--~~~~i~~l~~~i~ 174 (181)
.+.+ .++|+++++||.|-.... ...+.+.+. ...+.+++.+|+. +-+.|..+++.+.
T Consensus 175 eLk~----~~kPfiivlN~~dp~~~e-t~~l~~~l~----eky~vpvl~v~c~~l~~~DI~~il~~vL 233 (492)
T TIGR02836 175 ELKE----LNKPFIILLNSTHPYHPE-TEALRQELE----EKYDVPVLAMDVESMRESDILSVLEEVL 233 (492)
T ss_pred HHHh----cCCCEEEEEECcCCCCch-hHHHHHHHH----HHhCCceEEEEHHHcCHHHHHHHHHHHH
Confidence 5544 489999999999944322 333333321 1123456666654 3445666665543
No 313
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=99.24 E-value=1.6e-10 Score=88.43 Aligned_cols=162 Identities=15% Similarity=0.125 Sum_probs=100.3
Q ss_pred ccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEE----CCeEEEEEEcCCChhhHHHHHhhccC----CCEE
Q 030233 17 RIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEY----KNKSFCVWDVGGQNKIRALWRHYFRD----TLGL 88 (181)
Q Consensus 17 ~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~d~~g~~~~~~~~~~~~~~----~d~i 88 (181)
.-+|+|+|..++|||||+.+|.+.+.+.....+++++..+.- ....+.+|...|...+..+..-.+.. --.+
T Consensus 25 ~k~vlvlG~~~~GKttli~~L~~~e~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~~t~v 104 (472)
T PF05783_consen 25 EKSVLVLGDKGSGKTTLIARLQGIEDPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLPNTLV 104 (472)
T ss_pred CceEEEEeCCCCchHHHHHHhhccCCCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccccceEE
Confidence 457999999999999999999876543333333344433322 22468999999877777766555542 2568
Q ss_pred EEEEECCCcccHH-HHHHHHHHH------------------------HcC-------C---------------C------
Q 030233 89 TFVVDSSDRERIS-EARNELHQI------------------------LSD-------N---------------E------ 115 (181)
Q Consensus 89 i~v~d~~~~~s~~-~~~~~~~~~------------------------~~~-------~---------------~------ 115 (181)
++|+|.+.|..+- .+..|+.-+ ++. . .
T Consensus 105 vIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~~~~l 184 (472)
T PF05783_consen 105 VIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDDESVLL 184 (472)
T ss_pred EEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCcccccccccccccccccC
Confidence 8899999874332 222221111 000 0 0
Q ss_pred ---------CCCCeEEEEEeCCCCCC----CCCH--H---HHHhhhCccccCCccEEEEEeeccCCCCHHHHHHHHHhhh
Q 030233 116 ---------LSNAALLVFANKQDLPN----VMPT--A---EVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNI 177 (181)
Q Consensus 116 ---------~~~~piilv~nK~D~~~----~~~~--~---~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~ 177 (181)
.-++|+++|.+|+|... +... + -+...+. ...-..+...+.+|++...|++.++.+|.+.+
T Consensus 185 pl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR-~~cL~yGAsL~yts~~~~~n~~~L~~yi~h~l 263 (472)
T PF05783_consen 185 PLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLR-TFCLKYGASLIYTSVKEEKNLDLLYKYILHRL 263 (472)
T ss_pred CCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHH-HHHHhcCCeEEEeeccccccHHHHHHHHHHHh
Confidence 01269999999999632 1111 1 1111111 11123566789999999999999999999887
Q ss_pred hc
Q 030233 178 SV 179 (181)
Q Consensus 178 ~~ 179 (181)
..
T Consensus 264 ~~ 265 (472)
T PF05783_consen 264 YG 265 (472)
T ss_pred cc
Confidence 64
No 314
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=99.24 E-value=5.7e-11 Score=79.38 Aligned_cols=80 Identities=21% Similarity=0.205 Sum_probs=51.7
Q ss_pred CEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH--HHHHhhhCccccCCccEEEEEeeccCC
Q 030233 86 LGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPT--AEVADKLELYSLGQRRWSIQSCSAISG 163 (181)
Q Consensus 86 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (181)
+.-|+|+|++..+-... + ...... ..=++|+||.|+.+.... +.+.+..... +...+++++|+++|
T Consensus 119 ~~~v~VidvteGe~~P~--K------~gP~i~-~aDllVInK~DLa~~v~~dlevm~~da~~~---np~~~ii~~n~ktg 186 (202)
T COG0378 119 HLRVVVIDVTEGEDIPR--K------GGPGIF-KADLLVINKTDLAPYVGADLEVMARDAKEV---NPEAPIIFTNLKTG 186 (202)
T ss_pred ceEEEEEECCCCCCCcc--c------CCCcee-EeeEEEEehHHhHHHhCccHHHHHHHHHHh---CCCCCEEEEeCCCC
Confidence 47888888875432111 0 011101 134899999999774433 5444443322 35668999999999
Q ss_pred CCHHHHHHHHHhhh
Q 030233 164 QGLYEGLDWLSNNI 177 (181)
Q Consensus 164 ~~i~~l~~~i~~~~ 177 (181)
+|++++++|+...+
T Consensus 187 ~G~~~~~~~i~~~~ 200 (202)
T COG0378 187 EGLDEWLRFIEPQA 200 (202)
T ss_pred cCHHHHHHHHHhhc
Confidence 99999999998764
No 315
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.23 E-value=3.1e-10 Score=88.79 Aligned_cols=115 Identities=12% Similarity=0.066 Sum_probs=70.0
Q ss_pred CccEEEEEcCCCCChHHHHHhhhcCCccccc----CccceeEEEEEECCeEEEEEEcCCChhhH-------H---HHHhh
Q 030233 16 CRIKLLMVGLDASGKTTILYKMKLGEIVTTT----PTIGFNVEAVEYKNKSFCVWDVGGQNKIR-------A---LWRHY 81 (181)
Q Consensus 16 ~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~i~d~~g~~~~~-------~---~~~~~ 81 (181)
..++|+++|.+|+||||++|++++....... .|...........+..+.++||||-.... . ....+
T Consensus 117 fslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~ 196 (763)
T TIGR00993 117 FSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVKKF 196 (763)
T ss_pred cceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECCceEEEEECCCCCccccchHHHHHHHHHHHHH
Confidence 3578999999999999999999998632222 22222222223467889999999954321 1 12223
Q ss_pred cc--CCCEEEEEEECCCcccHHHHHHH---HHHHHcCCCCCCCeEEEEEeCCCCCC
Q 030233 82 FR--DTLGLTFVVDSSDRERISEARNE---LHQILSDNELSNAALLVFANKQDLPN 132 (181)
Q Consensus 82 ~~--~~d~ii~v~d~~~~~s~~~~~~~---~~~~~~~~~~~~~piilv~nK~D~~~ 132 (181)
+. .+|++|+|..+.......+.... +..++... --..+|+|+|+.|..+
T Consensus 197 Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~--Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 197 IKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPS--IWFNAIVTLTHAASAP 250 (763)
T ss_pred HhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHH--hHcCEEEEEeCCccCC
Confidence 33 57999999887533222122223 33333221 1145799999999875
No 316
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.21 E-value=1.5e-10 Score=84.66 Aligned_cols=140 Identities=14% Similarity=0.219 Sum_probs=87.1
Q ss_pred CccEEEEEcCCCCChHHHHHhhhcCCccc----------ccCccceeEEEEEEC----CeEEEEEEcCCChhh-------
Q 030233 16 CRIKLLMVGLDASGKTTILYKMKLGEIVT----------TTPTIGFNVEAVEYK----NKSFCVWDVGGQNKI------- 74 (181)
Q Consensus 16 ~~~~i~~~G~~~~GKssl~~~~~~~~~~~----------~~~~~~~~~~~~~~~----~~~~~i~d~~g~~~~------- 74 (181)
..|+++++|++|.|||||+|+|+...... ...+..+......+. ..++++.||||..+.
T Consensus 20 ~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w 99 (366)
T KOG2655|consen 20 FDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCW 99 (366)
T ss_pred CceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccc
Confidence 36999999999999999999998874221 112344444444442 368899999993211
Q ss_pred -------HHHHHhhc-----------c--CCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC
Q 030233 75 -------RALWRHYF-----------R--DTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVM 134 (181)
Q Consensus 75 -------~~~~~~~~-----------~--~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~ 134 (181)
.+....++ . .+|+++|.+... ..++..++-.+.+-+. ..+.+|.|+-|.|.....
T Consensus 100 ~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~-ghgL~p~Di~~Mk~l~----~~vNiIPVI~KaD~lT~~ 174 (366)
T KOG2655|consen 100 RPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPT-GHGLKPLDIEFMKKLS----KKVNLIPVIAKADTLTKD 174 (366)
T ss_pred hhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCC-CCCCcHhhHHHHHHHh----ccccccceeeccccCCHH
Confidence 11111121 2 468999999876 4566666655554443 368899999999987754
Q ss_pred CHHHHHhhhCccccCCccEEEEEeecc
Q 030233 135 PTAEVADKLELYSLGQRRWSIQSCSAI 161 (181)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (181)
....++... .......++++|.....
T Consensus 175 El~~~K~~I-~~~i~~~nI~vf~fp~~ 200 (366)
T KOG2655|consen 175 ELNQFKKRI-RQDIEEHNIKVFDFPTD 200 (366)
T ss_pred HHHHHHHHH-HHHHHHcCcceecCCCC
Confidence 444444433 11223445555555433
No 317
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.21 E-value=2.8e-10 Score=80.56 Aligned_cols=160 Identities=20% Similarity=0.165 Sum_probs=102.4
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhcC-------Cccc------------ccCccceeEEEEEECCeEEEEEEcCCChhhH
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKLG-------EIVT------------TTPTIGFNVEAVEYKNKSFCVWDVGGQNKIR 75 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~~-------~~~~------------~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~ 75 (181)
+...+|..+|+...|||||...+..- .... ...|+......++..+..+...|.||+.+|-
T Consensus 10 kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDYv 89 (394)
T COG0050 10 KPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYV 89 (394)
T ss_pred CCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHHHH
Confidence 44689999999999999998877531 1111 1223333333444578899999999999999
Q ss_pred HHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHH-----HHHhhhCccccCC
Q 030233 76 ALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTA-----EVADKLELYSLGQ 150 (181)
Q Consensus 76 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~-----~~~~~~~~~~~~~ 150 (181)
.+...-.-+.|+.|+|+++++. ...+.++-+....+- .-+.+++++||+|+.+..+.- ++++.++...+..
T Consensus 90 KNMItgAaqmDgAILVVsA~dG-pmPqTrEHiLlarqv---Gvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~f~g 165 (394)
T COG0050 90 KNMITGAAQMDGAILVVAATDG-PMPQTREHILLARQV---GVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYGFPG 165 (394)
T ss_pred HHHhhhHHhcCccEEEEEcCCC-CCCcchhhhhhhhhc---CCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcCCCC
Confidence 8877777789999999999863 122222222221111 234577888999998744332 2334444444444
Q ss_pred ccEEEEEeeccCCC--------CHHHHHHHHHhhhh
Q 030233 151 RRWSIQSCSAISGQ--------GLYEGLDWLSNNIS 178 (181)
Q Consensus 151 ~~~~~~~~Sa~~~~--------~i~~l~~~i~~~~~ 178 (181)
.+.+++..||...- .|.+|.+.+..++.
T Consensus 166 d~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip 201 (394)
T COG0050 166 DDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIP 201 (394)
T ss_pred CCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCC
Confidence 56788888877522 35677777666654
No 318
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.21 E-value=2.6e-09 Score=75.20 Aligned_cols=69 Identities=14% Similarity=0.162 Sum_probs=42.8
Q ss_pred eEEEEEEcCCChh-------------hHHHHHhhccC-CCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEe
Q 030233 61 KSFCVWDVGGQNK-------------IRALWRHYFRD-TLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFAN 126 (181)
Q Consensus 61 ~~~~i~d~~g~~~-------------~~~~~~~~~~~-~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~n 126 (181)
..+.++|+||... ...+...+++. .+.+++|+|+...-.-+........+ .. ...|+++|+|
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~l-d~---~~~rti~ViT 200 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEV-DP---QGERTIGVIT 200 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHH-HH---cCCcEEEEEE
Confidence 5799999999531 22345667774 46888999885321111111222222 22 4789999999
Q ss_pred CCCCCCC
Q 030233 127 KQDLPNV 133 (181)
Q Consensus 127 K~D~~~~ 133 (181)
|.|..+.
T Consensus 201 K~D~~~~ 207 (240)
T smart00053 201 KLDLMDE 207 (240)
T ss_pred CCCCCCc
Confidence 9998763
No 319
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=99.21 E-value=8.2e-10 Score=76.64 Aligned_cols=151 Identities=19% Similarity=0.147 Sum_probs=96.5
Q ss_pred ccEEEEEcCCCCChHHHHHhhhcCC--cccccC-ccceeEEEEEECCeEEEEEEcCCChhhH-------HHHHhhccCCC
Q 030233 17 RIKLLMVGLDASGKTTILYKMKLGE--IVTTTP-TIGFNVEAVEYKNKSFCVWDVGGQNKIR-------ALWRHYFRDTL 86 (181)
Q Consensus 17 ~~~i~~~G~~~~GKssl~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~i~d~~g~~~~~-------~~~~~~~~~~d 86 (181)
.-+++++|-|.+|||||+..+.... ...+.. |+..--..+.+.+..+++.|.||--... ++.....+.+|
T Consensus 62 daRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGRGRQviavArtaD 141 (364)
T KOG1486|consen 62 DARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGRGRQVIAVARTAD 141 (364)
T ss_pred CeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCceEEEecCcccccccccCCCCCceEEEEeeccc
Confidence 4689999999999999999997644 222221 2222233467789999999999833222 23445567899
Q ss_pred EEEEEEECCCcccHHHHH-HHHHHHHcC--CCCCC---------------------------------------------
Q 030233 87 GLTFVVDSSDRERISEAR-NELHQILSD--NELSN--------------------------------------------- 118 (181)
Q Consensus 87 ~ii~v~d~~~~~s~~~~~-~~~~~~~~~--~~~~~--------------------------------------------- 118 (181)
.+++|+|++..+.-.... ..++.+=-+ ...++
T Consensus 142 lilMvLDatk~e~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~~lT~~~ek~i~~ILheykI~Naevl~Re 221 (364)
T KOG1486|consen 142 LILMVLDATKSEDQREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDEKLIYTILHEYKIHNAEVLFRE 221 (364)
T ss_pred EEEEEecCCcchhHHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEEeeeeccccccHHHHHHHHHHHeeccceEEEec
Confidence 999999998654333222 122221000 11111
Q ss_pred -----------------CeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHHHHHHhhh
Q 030233 119 -----------------AALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNI 177 (181)
Q Consensus 119 -----------------~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~ 177 (181)
++++.|.||+|... .+++.+... ..+ -+-+|+.-.-|++.+++.+.+.+
T Consensus 222 D~t~DdfIDvi~gnr~Y~~ClYvYnKID~vs---~eevdrlAr-----~Pn--svViSC~m~lnld~lle~iWe~l 287 (364)
T KOG1486|consen 222 DCTVDDFIDVIEGNRVYIKCLYVYNKIDQVS---IEEVDRLAR-----QPN--SVVISCNMKLNLDRLLERIWEEL 287 (364)
T ss_pred CCChHHHHHHHhccceEEEEEEEeeccceec---HHHHHHHhc-----CCC--cEEEEeccccCHHHHHHHHHHHh
Confidence 17888999999655 666665442 222 45567777889999999998875
No 320
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=99.20 E-value=2.2e-10 Score=82.09 Aligned_cols=148 Identities=17% Similarity=0.179 Sum_probs=97.9
Q ss_pred CccEEEEEcCCCCChHHHHHhhhcCCc---ccccCccceeEEEEEE-CCeEEEEEEcCCC---------hhhHHHHHhhc
Q 030233 16 CRIKLLMVGLDASGKTTILYKMKLGEI---VTTTPTIGFNVEAVEY-KNKSFCVWDVGGQ---------NKIRALWRHYF 82 (181)
Q Consensus 16 ~~~~i~~~G~~~~GKssl~~~~~~~~~---~~~~~~~~~~~~~~~~-~~~~~~i~d~~g~---------~~~~~~~~~~~ 82 (181)
....|.++|-.++|||||++.+.+... .....|++.+...... .+..+.+.||-|. ..|++... -.
T Consensus 177 s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~~vlltDTvGFisdLP~~LvaAF~ATLe-eV 255 (410)
T KOG0410|consen 177 SSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGNFVLLTDTVGFISDLPIQLVAAFQATLE-EV 255 (410)
T ss_pred CCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCcEEEEeechhhhhhCcHHHHHHHHHHHH-HH
Confidence 346799999999999999999986552 2245666666666655 5567888999992 22333333 33
Q ss_pred cCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCC----eEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEe
Q 030233 83 RDTLGLTFVVDSSDRERISEARNELHQILSDNELSNA----ALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSC 158 (181)
Q Consensus 83 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~----piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (181)
..+|.++.|.|+++|.--.... -....++.-+.+.. .++=|-||.|..+....+ +.+ ..+.+
T Consensus 256 aeadlllHvvDiShP~ae~q~e-~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e~------------E~n-~~v~i 321 (410)
T KOG0410|consen 256 AEADLLLHVVDISHPNAEEQRE-TVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVEE------------EKN-LDVGI 321 (410)
T ss_pred hhcceEEEEeecCCccHHHHHH-HHHHHHHhcCCCcHHHHhHHHhhccccccccccCcc------------ccC-Ccccc
Confidence 4699999999999886433333 33333443222322 356778888865422211 111 16789
Q ss_pred eccCCCCHHHHHHHHHhhhh
Q 030233 159 SAISGQGLYEGLDWLSNNIS 178 (181)
Q Consensus 159 Sa~~~~~i~~l~~~i~~~~~ 178 (181)
||++|.|++++.+.+-.++.
T Consensus 322 saltgdgl~el~~a~~~kv~ 341 (410)
T KOG0410|consen 322 SALTGDGLEELLKAEETKVA 341 (410)
T ss_pred ccccCccHHHHHHHHHHHhh
Confidence 99999999999998877654
No 321
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.16 E-value=2.8e-10 Score=78.41 Aligned_cols=160 Identities=21% Similarity=0.253 Sum_probs=100.0
Q ss_pred ccEEEEEcCCCCChHHHHHhhhcCCcccc----cCccceeEEEEEECCeEEEEEEcCCChhhHHH---HHhhccCCCEEE
Q 030233 17 RIKLLMVGLDASGKTTILYKMKLGEIVTT----TPTIGFNVEAVEYKNKSFCVWDVGGQNKIRAL---WRHYFRDTLGLT 89 (181)
Q Consensus 17 ~~~i~~~G~~~~GKssl~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~---~~~~~~~~d~ii 89 (181)
+.+|+++|...+||||+......+..|.. ..|...+...+...-+++++||.||+..+-.- ....++.+-+++
T Consensus 27 kp~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALi 106 (347)
T KOG3887|consen 27 KPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALI 106 (347)
T ss_pred CceEEEEeecccCcchhhheeeeccCCCceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeEE
Confidence 36799999999999999887776654432 22333333334345578999999997654321 456778899999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcC--CCCCCCeEEEEEeCCCCCCCCC----HHHHHhhh----CccccCCccEEEEEee
Q 030233 90 FVVDSSDRERISEARNELHQILSD--NELSNAALLVFANKQDLPNVMP----TAEVADKL----ELYSLGQRRWSIQSCS 159 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~--~~~~~~piilv~nK~D~~~~~~----~~~~~~~~----~~~~~~~~~~~~~~~S 159 (181)
+|+|+.+. +.+....+.....+ .-.+++.+=+++.|.|.+.+.- ...+.... .......-.+.|+-+|
T Consensus 107 fvIDaQdd--y~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~LTS 184 (347)
T KOG3887|consen 107 FVIDAQDD--YMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSFYLTS 184 (347)
T ss_pred EEEechHH--HHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEEEEee
Confidence 99999643 22222222222222 2336788889999999876321 11121111 1111123455677787
Q ss_pred ccCCCCHHHHHHHHHhhhhc
Q 030233 160 AISGQGLYEGLDWLSNNISV 179 (181)
Q Consensus 160 a~~~~~i~~l~~~i~~~~~~ 179 (181)
..+ ..|-|.|..+.+++..
T Consensus 185 IyD-HSIfEAFSkvVQkLip 203 (347)
T KOG3887|consen 185 IYD-HSIFEAFSKVVQKLIP 203 (347)
T ss_pred ecc-hHHHHHHHHHHHHHhh
Confidence 654 7888888888887654
No 322
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=99.13 E-value=2.2e-10 Score=76.95 Aligned_cols=55 Identities=22% Similarity=0.301 Sum_probs=44.5
Q ss_pred CccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEE-CCeEEEEEEcCC
Q 030233 16 CRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEY-KNKSFCVWDVGG 70 (181)
Q Consensus 16 ~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~d~~g 70 (181)
..++++++|.+|+|||||+|++.+.......+.+|++.....+ .+..+.++||||
T Consensus 116 ~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~~~~~~~l~DtPG 171 (172)
T cd04178 116 TSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVHLDKKVKLLDSPG 171 (172)
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEEeCCCEEEEECcC
Confidence 4589999999999999999999998876667777777654333 235789999999
No 323
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.13 E-value=2.8e-10 Score=75.49 Aligned_cols=95 Identities=17% Similarity=0.084 Sum_probs=62.7
Q ss_pred hHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccE
Q 030233 74 IRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRW 153 (181)
Q Consensus 74 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 153 (181)
++.+.....+++|++++|+|+.++..... ..+...+.. .+.|+++|+||+|+.+....+...... ...+.
T Consensus 2 ~~~~~~~i~~~aD~vl~V~D~~~~~~~~~--~~l~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~-----~~~~~ 71 (156)
T cd01859 2 WKRLVRRIIKESDVVLEVLDARDPELTRS--RKLERYVLE---LGKKLLIVLNKADLVPKEVLEKWKSIK-----ESEGI 71 (156)
T ss_pred HHHHHHHHHhhCCEEEEEeeCCCCcccCC--HHHHHHHHh---CCCcEEEEEEhHHhCCHHHHHHHHHHH-----HhCCC
Confidence 35567778888999999999987543221 122222222 368999999999986421111111111 11234
Q ss_pred EEEEeeccCCCCHHHHHHHHHhhhh
Q 030233 154 SIQSCSAISGQGLYEGLDWLSNNIS 178 (181)
Q Consensus 154 ~~~~~Sa~~~~~i~~l~~~i~~~~~ 178 (181)
+++.+||++|.|++++++.+.+.+.
T Consensus 72 ~~~~iSa~~~~gi~~L~~~l~~~~~ 96 (156)
T cd01859 72 PVVYVSAKERLGTKILRRTIKELAK 96 (156)
T ss_pred cEEEEEccccccHHHHHHHHHHHHh
Confidence 6899999999999999999987654
No 324
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=99.12 E-value=1.6e-09 Score=79.36 Aligned_cols=157 Identities=15% Similarity=0.096 Sum_probs=101.1
Q ss_pred CCCccEEEEEcCCCCChHHHHHhhhcCCcccc-----------------cCccceeEEEEE-------------------
Q 030233 14 PQCRIKLLMVGLDASGKTTILYKMKLGEIVTT-----------------TPTIGFNVEAVE------------------- 57 (181)
Q Consensus 14 ~~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~-----------------~~~~~~~~~~~~------------------- 57 (181)
+...+.+.++|+...|||||.-.+..+...+. .-+...+...+-
T Consensus 114 ~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~ 193 (527)
T COG5258 114 APEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKA 193 (527)
T ss_pred CCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHh
Confidence 44578899999999999999988875542221 112222222211
Q ss_pred ----ECCeEEEEEEcCCChhhHHHHHh--hccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCC
Q 030233 58 ----YKNKSFCVWDVGGQNKIRALWRH--YFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLP 131 (181)
Q Consensus 58 ----~~~~~~~i~d~~g~~~~~~~~~~--~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~ 131 (181)
..+.-+.+.||.|++.|.+.... .-+..|..++++.+++. .......-.-++.. ...|+|++++|+|+.
T Consensus 194 ~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG--~~~~tkEHLgi~~a---~~lPviVvvTK~D~~ 268 (527)
T COG5258 194 AVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDG--VTKMTKEHLGIALA---MELPVIVVVTKIDMV 268 (527)
T ss_pred HhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCC--cchhhhHhhhhhhh---hcCCEEEEEEecccC
Confidence 13467899999999999876443 44578999999998754 22332222222222 479999999999998
Q ss_pred CCCCHHHHHhhhC----c--------------------cccCCccEEEEEeeccCCCCHHHHHHHHHh
Q 030233 132 NVMPTAEVADKLE----L--------------------YSLGQRRWSIQSCSAISGQGLYEGLDWLSN 175 (181)
Q Consensus 132 ~~~~~~~~~~~~~----~--------------------~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~ 175 (181)
++...+.+.+... . ...+..-.|+|.+|+.+|+|++-|.+.+..
T Consensus 269 ~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f~~ 336 (527)
T COG5258 269 PDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFFLL 336 (527)
T ss_pred cHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHHHh
Confidence 7544333222211 0 111334679999999999999877665543
No 325
>PTZ00258 GTP-binding protein; Provisional
Probab=99.10 E-value=2.2e-09 Score=80.34 Aligned_cols=81 Identities=22% Similarity=0.231 Sum_probs=54.5
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhcCCcc--cc-cCccceeEEEEEEC-----------------CeEEEEEEcCCChh-
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKLGEIV--TT-TPTIGFNVEAVEYK-----------------NKSFCVWDVGGQNK- 73 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~--~~-~~~~~~~~~~~~~~-----------------~~~~~i~d~~g~~~- 73 (181)
...++|+++|.|++|||||+|++.+.... .+ ..|...+...+.+. +.++.+.|+||-..
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~g 98 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKG 98 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcC
Confidence 45689999999999999999999776521 11 12223333333332 34589999999321
Q ss_pred ------hHHHHHhhccCCCEEEEEEECC
Q 030233 74 ------IRALWRHYFRDTLGLTFVVDSS 95 (181)
Q Consensus 74 ------~~~~~~~~~~~~d~ii~v~d~~ 95 (181)
........++.+|++++|+|..
T Consensus 99 a~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 99 ASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 2223344567899999999973
No 326
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=99.09 E-value=5.8e-10 Score=74.02 Aligned_cols=55 Identities=18% Similarity=0.241 Sum_probs=44.2
Q ss_pred CccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEE-CCeEEEEEEcCC
Q 030233 16 CRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEY-KNKSFCVWDVGG 70 (181)
Q Consensus 16 ~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~d~~g 70 (181)
..++++++|.+|+|||||+|++.+.......++.|.+.....+ .+..+.+.||||
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~~~~~~~~~liDtPG 156 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQYITLMKRIYLIDCPG 156 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEEEEcCCCEEEEECcC
Confidence 4678999999999999999999998877777777766655443 234588999999
No 327
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=99.08 E-value=1.4e-09 Score=84.48 Aligned_cols=111 Identities=18% Similarity=0.215 Sum_probs=78.5
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhcCCcccccC----------cc------ceeEE--EEEE-------CCeEEEEEEcC
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKLGEIVTTTP----------TI------GFNVE--AVEY-------KNKSFCVWDVG 69 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~----------~~------~~~~~--~~~~-------~~~~~~i~d~~ 69 (181)
....+++++|+-++|||+|+..+....-++... +. |...+ .... ...-+++.|||
T Consensus 126 ~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTP 205 (971)
T KOG0468|consen 126 ERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTP 205 (971)
T ss_pred ceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCC
Confidence 345679999999999999999998765332211 10 11111 1111 34678999999
Q ss_pred CChhhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCC
Q 030233 70 GQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDL 130 (181)
Q Consensus 70 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~ 130 (181)
||..+.......++.+|++++|+|+.+.-.+... ..+....+ .+.|+++|+||.|.
T Consensus 206 GHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntE-r~ikhaiq----~~~~i~vviNKiDR 261 (971)
T KOG0468|consen 206 GHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTE-RIIKHAIQ----NRLPIVVVINKVDR 261 (971)
T ss_pred CcccchHHHHHHhhhcceEEEEEEcccCceeeHH-HHHHHHHh----ccCcEEEEEehhHH
Confidence 9999999998999999999999999765444333 22333333 47999999999996
No 328
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.08 E-value=7.3e-10 Score=75.87 Aligned_cols=99 Identities=19% Similarity=0.087 Sum_probs=64.4
Q ss_pred hhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC-HHHHHhhh---Ccccc
Q 030233 73 KIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMP-TAEVADKL---ELYSL 148 (181)
Q Consensus 73 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~-~~~~~~~~---~~~~~ 148 (181)
.+...+..+++.+|++++|+|+.++..- +...+... ..+.|+++|+||+|+.+... ........ .....
T Consensus 23 ~~~~~l~~~~~~ad~il~VvD~~~~~~~-----~~~~l~~~--~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~ 95 (190)
T cd01855 23 FILNLLSSISPKKALVVHVVDIFDFPGS-----LIPRLRLF--GGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGL 95 (190)
T ss_pred HHHHHHHhcccCCcEEEEEEECccCCCc-----cchhHHHh--cCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhc
Confidence 3577888899999999999999875311 11111111 14689999999999865332 22222211 00101
Q ss_pred CCccEEEEEeeccCCCCHHHHHHHHHhhhh
Q 030233 149 GQRRWSIQSCSAISGQGLYEGLDWLSNNIS 178 (181)
Q Consensus 149 ~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~ 178 (181)
......++.+||++|+|++++++.+.+.+.
T Consensus 96 ~~~~~~i~~vSA~~~~gi~eL~~~l~~~l~ 125 (190)
T cd01855 96 GLKPKDVILISAKKGWGVEELINAIKKLAK 125 (190)
T ss_pred CCCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence 111235899999999999999999988653
No 329
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.06 E-value=9.9e-10 Score=78.76 Aligned_cols=76 Identities=22% Similarity=0.243 Sum_probs=50.8
Q ss_pred EEEEcCCCCChHHHHHhhhcCCccc---ccCccceeEEEEEECC-----------------eEEEEEEcCCChh------
Q 030233 20 LLMVGLDASGKTTILYKMKLGEIVT---TTPTIGFNVEAVEYKN-----------------KSFCVWDVGGQNK------ 73 (181)
Q Consensus 20 i~~~G~~~~GKssl~~~~~~~~~~~---~~~~~~~~~~~~~~~~-----------------~~~~i~d~~g~~~------ 73 (181)
|+++|.|++|||||+|++.+..... ...|.......+.+.+ ..+.++|+||-..
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 5799999999999999999876421 1223333444444432 2599999999321
Q ss_pred -hHHHHHhhccCCCEEEEEEECC
Q 030233 74 -IRALWRHYFRDTLGLTFVVDSS 95 (181)
Q Consensus 74 -~~~~~~~~~~~~d~ii~v~d~~ 95 (181)
........++.+|++++|+|..
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCc
Confidence 1222334557899999999873
No 330
>PRK12289 GTPase RsgA; Reviewed
Probab=99.06 E-value=8.8e-10 Score=81.79 Aligned_cols=88 Identities=18% Similarity=0.146 Sum_probs=62.3
Q ss_pred hhccCCCEEEEEEECCCcc-cHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEe
Q 030233 80 HYFRDTLGLTFVVDSSDRE-RISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSC 158 (181)
Q Consensus 80 ~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (181)
..+.++|.+++|+|+.++. ....+..++... .. .++|+++|+||+|+......+.....+ ...+..++.+
T Consensus 85 ~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a-~~---~~ip~ILVlNK~DLv~~~~~~~~~~~~-----~~~g~~v~~i 155 (352)
T PRK12289 85 PPVANADQILLVFALAEPPLDPWQLSRFLVKA-ES---TGLEIVLCLNKADLVSPTEQQQWQDRL-----QQWGYQPLFI 155 (352)
T ss_pred hhhhcCCEEEEEEECCCCCCCHHHHHHHHHHH-HH---CCCCEEEEEEchhcCChHHHHHHHHHH-----HhcCCeEEEE
Confidence 3467899999999998775 333455555544 22 579999999999997532222222222 2234579999
Q ss_pred eccCCCCHHHHHHHHHhh
Q 030233 159 SAISGQGLYEGLDWLSNN 176 (181)
Q Consensus 159 Sa~~~~~i~~l~~~i~~~ 176 (181)
||.+|+|++++++.+..+
T Consensus 156 SA~tg~GI~eL~~~L~~k 173 (352)
T PRK12289 156 SVETGIGLEALLEQLRNK 173 (352)
T ss_pred EcCCCCCHHHHhhhhccc
Confidence 999999999999988754
No 331
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.04 E-value=2.3e-09 Score=79.38 Aligned_cols=78 Identities=23% Similarity=0.240 Sum_probs=52.3
Q ss_pred cEEEEEcCCCCChHHHHHhhhcCCcc--cc-cCccceeEEEEEECC-----------------eEEEEEEcCCChh----
Q 030233 18 IKLLMVGLDASGKTTILYKMKLGEIV--TT-TPTIGFNVEAVEYKN-----------------KSFCVWDVGGQNK---- 73 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~~~~~--~~-~~~~~~~~~~~~~~~-----------------~~~~i~d~~g~~~---- 73 (181)
++|+++|.|++|||||+|++.+.... .+ ..|.......+.+.+ ..+.+.|+||-..
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 78999999999999999999987621 11 122233333333322 3689999999321
Q ss_pred ---hHHHHHhhccCCCEEEEEEECC
Q 030233 74 ---IRALWRHYFRDTLGLTFVVDSS 95 (181)
Q Consensus 74 ---~~~~~~~~~~~~d~ii~v~d~~ 95 (181)
........++.+|++++|+|+.
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 1122334567899999999984
No 332
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=99.03 E-value=8.9e-09 Score=75.57 Aligned_cols=79 Identities=19% Similarity=0.286 Sum_probs=53.6
Q ss_pred ccEEEEEcCCCCChHHHHHhhhcCC-------cccccCccceeEEE--------------EEECCeEEEEEEcCCCh---
Q 030233 17 RIKLLMVGLDASGKTTILYKMKLGE-------IVTTTPTIGFNVEA--------------VEYKNKSFCVWDVGGQN--- 72 (181)
Q Consensus 17 ~~~i~~~G~~~~GKssl~~~~~~~~-------~~~~~~~~~~~~~~--------------~~~~~~~~~i~d~~g~~--- 72 (181)
.++++++|.|++|||||+|.+.... |.+-.|..|..... -......+.++|.+|.-
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 4789999999999999999998765 11222333322211 01234678999999832
Q ss_pred ----hhHHHHHhhccCCCEEEEEEECC
Q 030233 73 ----KIRALWRHYFRDTLGLTFVVDSS 95 (181)
Q Consensus 73 ----~~~~~~~~~~~~~d~ii~v~d~~ 95 (181)
-+.......++++|+++.|+|..
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEec
Confidence 23344556778899999999886
No 333
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=99.03 E-value=4.1e-10 Score=85.62 Aligned_cols=156 Identities=18% Similarity=0.259 Sum_probs=108.0
Q ss_pred CccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEE---EEECCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEE
Q 030233 16 CRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEA---VEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVV 92 (181)
Q Consensus 16 ~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (181)
.++|++++|..++|||+|+.+++.+.+.....+.+-.+.. +......+.+.|.+|.... .+....|++|+||
T Consensus 29 pelk~givg~~~sgktalvhr~ltgty~~~e~~e~~~~kkE~vv~gqs~lLlirdeg~~~~a-----Qft~wvdavIfvf 103 (749)
T KOG0705|consen 29 PELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGGRFKKEVVVDGQSHLLLIRDEGGHPDA-----QFCQWVDAVVFVF 103 (749)
T ss_pred chhheeeeecccCCceeeeeeeccceeccccCCcCccceeeEEeeccceEeeeecccCCchh-----hhhhhccceEEEE
Confidence 3689999999999999999999988865544444433222 3336678888999985442 2555689999999
Q ss_pred ECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HHHHHhhhCccccCCccEEEEEeeccCCCCHHHHH
Q 030233 93 DSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMP--TAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGL 170 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 170 (181)
.+.+..+++.+......+-.......+|.++++++.-.....+ ..+.+... .........+|++++..|-++...|
T Consensus 104 ~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~--l~~~~krcsy~et~atyGlnv~rvf 181 (749)
T KOG0705|consen 104 SVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQ--LSAQMKRCSYYETCATYGLNVERVF 181 (749)
T ss_pred EeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHH--HHHhcCccceeecchhhhhhHHHHH
Confidence 9999999998877776665443345788888888753211111 11111111 1113344579999999999999999
Q ss_pred HHHHhhhh
Q 030233 171 DWLSNNIS 178 (181)
Q Consensus 171 ~~i~~~~~ 178 (181)
..++.++.
T Consensus 182 ~~~~~k~i 189 (749)
T KOG0705|consen 182 QEVAQKIV 189 (749)
T ss_pred HHHHHHHH
Confidence 99988764
No 334
>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]
Probab=99.02 E-value=2.1e-09 Score=75.07 Aligned_cols=131 Identities=24% Similarity=0.293 Sum_probs=92.2
Q ss_pred cceeEEEEEECCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCC----------cccHHHHHHHHHHHHcCCCCCC
Q 030233 49 IGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSD----------RERISEARNELHQILSDNELSN 118 (181)
Q Consensus 49 ~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~ 118 (181)
.|+...+++....+|+.+|++|+.+-+.-|...+.+..++|+|+..+. ...+.+....+..+.+.++...
T Consensus 190 sGIfet~FqVdkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~t 269 (379)
T KOG0099|consen 190 SGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRT 269 (379)
T ss_pred cceeeEEEeccccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhh
Confidence 344455666688899999999999999999999999999999987653 1246666777888888888888
Q ss_pred CeEEEEEeCCCCCCCCC------HH------------------------HHHhhhC--cc--------ccCCccEEEEEe
Q 030233 119 AALLVFANKQDLPNVMP------TA------------------------EVADKLE--LY--------SLGQRRWSIQSC 158 (181)
Q Consensus 119 ~piilv~nK~D~~~~~~------~~------------------------~~~~~~~--~~--------~~~~~~~~~~~~ 158 (181)
+.+|+++||-|+..+.. .+ .++..+- .. .-+.+-+.+.++
T Consensus 270 isvIlFLNKqDllaeKi~Agk~~i~dyFpEf~~y~~p~da~~es~~d~~v~raK~fird~FlRiSta~~Dg~h~CYpHFT 349 (379)
T KOG0099|consen 270 ISVILFLNKQDLLAEKILAGKSKIEDYFPEFARYTTPEDATPESGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFT 349 (379)
T ss_pred hheeEEecHHHHHHHHHHcchhhHHHhChHHhccCCccccCCCCCCChhhHHHHHhhhhhHhhhccccCCCceeccccee
Confidence 99999999999854210 00 0111000 00 001233456678
Q ss_pred eccCCCCHHHHHHHHHhhhhc
Q 030233 159 SAISGQGLYEGLDWLSNNISV 179 (181)
Q Consensus 159 Sa~~~~~i~~l~~~i~~~~~~ 179 (181)
.|.+-++|..+|....+.+..
T Consensus 350 cAvDTenIrrVFnDcrdiIqr 370 (379)
T KOG0099|consen 350 CAVDTENIRRVFNDCRDIIQR 370 (379)
T ss_pred EeechHHHHHHHHHHHHHHHH
Confidence 899999999999987766543
No 335
>PRK12288 GTPase RsgA; Reviewed
Probab=99.00 E-value=2.8e-09 Score=79.14 Aligned_cols=89 Identities=18% Similarity=0.114 Sum_probs=64.8
Q ss_pred ccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeecc
Q 030233 82 FRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAI 161 (181)
Q Consensus 82 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (181)
..++|.+++|++...+.++..+..|+.... . .++|+++|+||+|+......+........ +...+.+++++||+
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~-~---~~i~~VIVlNK~DL~~~~~~~~~~~~~~~--y~~~g~~v~~vSA~ 191 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACE-T---LGIEPLIVLNKIDLLDDEGRAFVNEQLDI--YRNIGYRVLMVSSH 191 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHH-h---cCCCEEEEEECccCCCcHHHHHHHHHHHH--HHhCCCeEEEEeCC
Confidence 356899999999987788888888876442 2 47899999999999754322222222211 12234589999999
Q ss_pred CCCCHHHHHHHHHhh
Q 030233 162 SGQGLYEGLDWLSNN 176 (181)
Q Consensus 162 ~~~~i~~l~~~i~~~ 176 (181)
+++|++++++.+...
T Consensus 192 tg~GideL~~~L~~k 206 (347)
T PRK12288 192 TGEGLEELEAALTGR 206 (347)
T ss_pred CCcCHHHHHHHHhhC
Confidence 999999999998764
No 336
>COG1161 Predicted GTPases [General function prediction only]
Probab=99.00 E-value=1.2e-09 Score=80.36 Aligned_cols=58 Identities=17% Similarity=0.252 Sum_probs=49.1
Q ss_pred CCCCccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEE-CCeEEEEEEcCC
Q 030233 13 FPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEY-KNKSFCVWDVGG 70 (181)
Q Consensus 13 ~~~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~d~~g 70 (181)
......+++++|-|++||||+||++++......++.+|++.....+ .+..+.++||||
T Consensus 128 ~~~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~~~~i~LlDtPG 186 (322)
T COG1161 128 LLKRKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKLDDGIYLLDTPG 186 (322)
T ss_pred CCccceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEcCCCeEEecCCC
Confidence 3345688999999999999999999999988888888988777655 445589999999
No 337
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.00 E-value=8.1e-09 Score=75.48 Aligned_cols=121 Identities=16% Similarity=0.183 Sum_probs=82.2
Q ss_pred ccEEEEEcCCCCChHHHHHhhhcCCccccc----CccceeEEEEEE----------------------------------
Q 030233 17 RIKLLMVGLDASGKTTILYKMKLGEIVTTT----PTIGFNVEAVEY---------------------------------- 58 (181)
Q Consensus 17 ~~~i~~~G~~~~GKssl~~~~~~~~~~~~~----~~~~~~~~~~~~---------------------------------- 58 (181)
..-|+++|.-..|||||++.++.++++... ||+..-......
T Consensus 58 KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf~ 137 (532)
T KOG1954|consen 58 KPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRFM 137 (532)
T ss_pred CceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHHH
Confidence 456899999999999999999998866432 222211111000
Q ss_pred -------CCeEEEEEEcCCCh-----------hhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCe
Q 030233 59 -------KNKSFCVWDVGGQN-----------KIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAA 120 (181)
Q Consensus 59 -------~~~~~~i~d~~g~~-----------~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p 120 (181)
--..++++||||-- +|.....=+...+|.++++||+...+--++....+..+..+ .-.
T Consensus 138 csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~----Edk 213 (532)
T KOG1954|consen 138 CSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGH----EDK 213 (532)
T ss_pred HhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCC----cce
Confidence 00358999999922 23344556778899999999998766656666666666544 345
Q ss_pred EEEEEeCCCCCCCCCHHHHHhhhC
Q 030233 121 LLVFANKQDLPNVMPTAEVADKLE 144 (181)
Q Consensus 121 iilv~nK~D~~~~~~~~~~~~~~~ 144 (181)
+-+|+||.|..+ .+++.+.++
T Consensus 214 iRVVLNKADqVd---tqqLmRVyG 234 (532)
T KOG1954|consen 214 IRVVLNKADQVD---TQQLMRVYG 234 (532)
T ss_pred eEEEeccccccC---HHHHHHHHH
Confidence 667899999776 666666554
No 338
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=99.00 E-value=9.6e-10 Score=71.66 Aligned_cols=52 Identities=17% Similarity=0.237 Sum_probs=39.4
Q ss_pred EEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEE--EEECCeEEEEEEcCCC
Q 030233 19 KLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEA--VEYKNKSFCVWDVGGQ 71 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~d~~g~ 71 (181)
+++++|.+|+|||||+|++.+..........+.+... +...+ .+.+|||||-
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFLTP-TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEeCC-CEEEEECCCc
Confidence 8999999999999999999988865555555544333 22233 6899999994
No 339
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.99 E-value=3.3e-09 Score=74.00 Aligned_cols=150 Identities=17% Similarity=0.053 Sum_probs=94.7
Q ss_pred cEEEEEcCCCCChHHHHHhhhcCCc--ccccCcccee-EEEEEECCeEEEEEEcCCChhh-------HHHHHhhccCCCE
Q 030233 18 IKLLMVGLDASGKTTILYKMKLGEI--VTTTPTIGFN-VEAVEYKNKSFCVWDVGGQNKI-------RALWRHYFRDTLG 87 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~i~d~~g~~~~-------~~~~~~~~~~~d~ 87 (181)
-++.++|-|.+||||++..+.+... +.+.-|.-++ .....+...++++.|.||--+. ..+.....+.|..
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qviavartcnl 139 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVIAVARTCNL 139 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccccceeeecCcchhcccccCCCCccEEEEEeecccE
Confidence 3899999999999999999987652 2222222222 2234568889999999983221 1233445677899
Q ss_pred EEEEEECCCcccHHHHHHH-----------------------------------------HHHHHcCC------------
Q 030233 88 LTFVVDSSDRERISEARNE-----------------------------------------LHQILSDN------------ 114 (181)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~-----------------------------------------~~~~~~~~------------ 114 (181)
+++|+|+..|-+-..+.+. +.....+.
T Consensus 140 i~~vld~~kp~~hk~~ie~eleg~girlnk~pp~i~~kkKdkgGInlt~~~LdlD~~rsil~eyR~hsAdi~Lr~DaT~D 219 (358)
T KOG1487|consen 140 IFIVLDVLKPLSHKKIIEKELEGFGIRLNKQPPNIGTKKKDKGGINLTGTHLDLDLQRSILSEYRIHSADIALRFDATAD 219 (358)
T ss_pred EEEEeeccCcccHHHHHHHhhhcceeeccCCCCCccccccccCceeeecchhhHHHHHHHHHHhhhcchheeeecCcchh
Confidence 9999999866433322111 11100000
Q ss_pred ------CCC--CCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHHHHHHhhh
Q 030233 115 ------ELS--NAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNI 177 (181)
Q Consensus 115 ------~~~--~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~ 177 (181)
..+ -+|.++++||.|... .+++.-.+ .....+.+||.++.|++++++.+.+.+
T Consensus 220 dLIdvVegnr~yVp~iyvLNkIdsIS---iEELdii~-------~iphavpISA~~~wn~d~lL~~mweyL 280 (358)
T KOG1487|consen 220 DLIDVVEGNRIYVPCIYVLNKIDSIS---IEELDIIY-------TIPHAVPISAHTGWNFDKLLEKMWEYL 280 (358)
T ss_pred hhhhhhccCceeeeeeeeecccceee---eeccceee-------eccceeecccccccchHHHHHHHhhcc
Confidence 001 248888888888544 44333322 333689999999999999999888764
No 340
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.98 E-value=2.7e-09 Score=77.49 Aligned_cols=88 Identities=17% Similarity=0.109 Sum_probs=64.1
Q ss_pred HhhccCCCEEEEEEECCCcc-cHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEE
Q 030233 79 RHYFRDTLGLTFVVDSSDRE-RISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQS 157 (181)
Q Consensus 79 ~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (181)
...+.++|.+++|+|+.++. ++..+..|+..+.. .++|+++|+||+|+.+.. +...... . ....+.+++.
T Consensus 73 ~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~----~~ip~iIVlNK~DL~~~~--~~~~~~~-~--~~~~g~~v~~ 143 (287)
T cd01854 73 QVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA----AGIEPVIVLTKADLLDDE--EEELELV-E--ALALGYPVLA 143 (287)
T ss_pred eeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH----cCCCEEEEEEHHHCCChH--HHHHHHH-H--HHhCCCeEEE
Confidence 34577899999999999887 77777777665533 378999999999996531 1111111 0 1123458999
Q ss_pred eeccCCCCHHHHHHHHHh
Q 030233 158 CSAISGQGLYEGLDWLSN 175 (181)
Q Consensus 158 ~Sa~~~~~i~~l~~~i~~ 175 (181)
+||+++.|+++++..+..
T Consensus 144 vSA~~g~gi~~L~~~L~~ 161 (287)
T cd01854 144 VSAKTGEGLDELREYLKG 161 (287)
T ss_pred EECCCCccHHHHHhhhcc
Confidence 999999999999988764
No 341
>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]
Probab=98.96 E-value=1.6e-09 Score=74.35 Aligned_cols=132 Identities=20% Similarity=0.289 Sum_probs=90.1
Q ss_pred ccceeEEEEEECCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECC----------CcccHHHHHHHHHHHHcCCCCC
Q 030233 48 TIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSS----------DRERISEARNELHQILSDNELS 117 (181)
Q Consensus 48 ~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~s~~~~~~~~~~~~~~~~~~ 117 (181)
|.|+..+.+......+.+.|++|+..-+.-|..++++...+++++.++ ++..+.+....+..++...+..
T Consensus 186 TTGi~eypfdl~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~ 265 (359)
T KOG0085|consen 186 TTGIIEYPFDLQKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQ 265 (359)
T ss_pred cccceecCcchhhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhcccccc
Confidence 444444455557788999999999888888888888877777765554 2345666677788888888889
Q ss_pred CCeEEEEEeCCCCCCCCC------------------HHHHHhh----h-CccccCCccEEEEEeeccCCCCHHHHHHHHH
Q 030233 118 NAALLVFANKQDLPNVMP------------------TAEVADK----L-ELYSLGQRRWSIQSCSAISGQGLYEGLDWLS 174 (181)
Q Consensus 118 ~~piilv~nK~D~~~~~~------------------~~~~~~~----~-~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~ 174 (181)
+.++|+++||.|+.++.. .+..++. + ....-..+.+.-..++|.+.+||.-+|..+.
T Consensus 266 nssVIlFLNKkDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVk 345 (359)
T KOG0085|consen 266 NSSVILFLNKKDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVK 345 (359)
T ss_pred CCceEEEechhhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHH
Confidence 999999999999876321 1111111 1 1111122333445678889999999999887
Q ss_pred hhhhc
Q 030233 175 NNISV 179 (181)
Q Consensus 175 ~~~~~ 179 (181)
+-+.+
T Consensus 346 DtiLq 350 (359)
T KOG0085|consen 346 DTILQ 350 (359)
T ss_pred HHHHH
Confidence 76654
No 342
>PRK00098 GTPase RsgA; Reviewed
Probab=98.96 E-value=1.9e-09 Score=78.67 Aligned_cols=88 Identities=18% Similarity=0.160 Sum_probs=60.3
Q ss_pred hccCCCEEEEEEECCCcccHHHH-HHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEee
Q 030233 81 YFRDTLGLTFVVDSSDRERISEA-RNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCS 159 (181)
Q Consensus 81 ~~~~~d~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (181)
...++|.+++|+|+.+++..... ..|+..+ .. .++|+++|+||+|+.+. .+........ +...+.+++++|
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~-~~---~~ip~iIVlNK~DL~~~--~~~~~~~~~~--~~~~g~~v~~vS 148 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLA-EA---NGIKPIIVLNKIDLLDD--LEEARELLAL--YRAIGYDVLELS 148 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHH-HH---CCCCEEEEEEhHHcCCC--HHHHHHHHHH--HHHCCCeEEEEe
Confidence 46789999999999888665554 4454443 33 47899999999998632 2222111111 122345799999
Q ss_pred ccCCCCHHHHHHHHHhh
Q 030233 160 AISGQGLYEGLDWLSNN 176 (181)
Q Consensus 160 a~~~~~i~~l~~~i~~~ 176 (181)
|++++|++++++.+...
T Consensus 149 A~~g~gi~~L~~~l~gk 165 (298)
T PRK00098 149 AKEGEGLDELKPLLAGK 165 (298)
T ss_pred CCCCccHHHHHhhccCc
Confidence 99999999999887543
No 343
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.93 E-value=5.9e-09 Score=69.19 Aligned_cols=91 Identities=16% Similarity=0.045 Sum_probs=58.3
Q ss_pred hhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEee
Q 030233 80 HYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCS 159 (181)
Q Consensus 80 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (181)
..++++|++++|+|+.++..- ....+...+... ..+.|+++|+||+|+.+..........+.. ......+.+|
T Consensus 4 ~~l~~aD~il~VvD~~~p~~~--~~~~i~~~l~~~-~~~~p~ilVlNKiDl~~~~~~~~~~~~~~~----~~~~~~~~iS 76 (157)
T cd01858 4 KVIDSSDVVIQVLDARDPMGT--RCKHVEEYLKKE-KPHKHLIFVLNKCDLVPTWVTARWVKILSK----EYPTIAFHAS 76 (157)
T ss_pred HhhhhCCEEEEEEECCCCccc--cCHHHHHHHHhc-cCCCCEEEEEEchhcCCHHHHHHHHHHHhc----CCcEEEEEee
Confidence 356789999999999876321 122233333221 246899999999999653222222222221 1222368899
Q ss_pred ccCCCCHHHHHHHHHhhh
Q 030233 160 AISGQGLYEGLDWLSNNI 177 (181)
Q Consensus 160 a~~~~~i~~l~~~i~~~~ 177 (181)
|+++.|++++.+.+.+.+
T Consensus 77 a~~~~~~~~L~~~l~~~~ 94 (157)
T cd01858 77 INNPFGKGSLIQLLRQFS 94 (157)
T ss_pred ccccccHHHHHHHHHHHH
Confidence 999999999999987653
No 344
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=98.91 E-value=1.5e-08 Score=73.36 Aligned_cols=160 Identities=20% Similarity=0.223 Sum_probs=104.6
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhcC-------Cccc----------ccCccceeEEEEEE--CCeEEEEEEcCCChhhH
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKLG-------EIVT----------TTPTIGFNVEAVEY--KNKSFCVWDVGGQNKIR 75 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~~-------~~~~----------~~~~~~~~~~~~~~--~~~~~~i~d~~g~~~~~ 75 (181)
+..++|.-+|+...|||||-..+..- ++.. ....+-++...+.| ....+.=.|.||+.+|-
T Consensus 52 KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADYI 131 (449)
T KOG0460|consen 52 KPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADYI 131 (449)
T ss_pred CCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHHHH
Confidence 34679999999999999998777431 1111 11223344444555 56678888999999999
Q ss_pred HHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHH-----HHhhhCccccCC
Q 030233 76 ALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAE-----VADKLELYSLGQ 150 (181)
Q Consensus 76 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~-----~~~~~~~~~~~~ 150 (181)
.+...-..+-|+.|+|+.++|. .+.+.++-+....+. .-..+++++||.|+.++++.-+ +++.+....+..
T Consensus 132 KNMItGaaqMDGaILVVaatDG-~MPQTrEHlLLArQV---GV~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf~G 207 (449)
T KOG0460|consen 132 KNMITGAAQMDGAILVVAATDG-PMPQTREHLLLARQV---GVKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGFDG 207 (449)
T ss_pred HHhhcCccccCceEEEEEcCCC-CCcchHHHHHHHHHc---CCceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCCCC
Confidence 8877777788999999999873 234444444333332 2356889999999986544333 333444444455
Q ss_pred ccEEEEEeecc---CCC-------CHHHHHHHHHhhhh
Q 030233 151 RRWSIQSCSAI---SGQ-------GLYEGLDWLSNNIS 178 (181)
Q Consensus 151 ~~~~~~~~Sa~---~~~-------~i~~l~~~i~~~~~ 178 (181)
.+.+++.-||+ .|. .|.+|++.+..++.
T Consensus 208 d~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyip 245 (449)
T KOG0460|consen 208 DNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYIP 245 (449)
T ss_pred CCCCeeecchhhhhcCCCccccHHHHHHHHHHHhccCC
Confidence 67789988766 342 36666666666543
No 345
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.91 E-value=5.4e-09 Score=76.02 Aligned_cols=57 Identities=19% Similarity=0.280 Sum_probs=45.3
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEE-CCeEEEEEEcCCC
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEY-KNKSFCVWDVGGQ 71 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~d~~g~ 71 (181)
...++++++|.+|+|||||+|++.+.......+.+|++...... .+..+.++||||-
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~~~~~~l~DtPGi 176 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWIKLGKGLELLDTPGI 176 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEEEEeCCcEEEEECCCc
Confidence 35689999999999999999999998876667777766655333 3456899999993
No 346
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.90 E-value=6e-09 Score=69.05 Aligned_cols=55 Identities=22% Similarity=0.284 Sum_probs=43.5
Q ss_pred CccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEE-CCeEEEEEEcCC
Q 030233 16 CRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEY-KNKSFCVWDVGG 70 (181)
Q Consensus 16 ~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~d~~g 70 (181)
...+++++|.+++||||++|++.+.......++.+++...... .+..+.+|||||
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~DtpG 155 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQLVKITSKIYLLDTPG 155 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeEEEEcCCCEEEEECcC
Confidence 4678999999999999999999987766677777766443222 345799999999
No 347
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.90 E-value=6.8e-09 Score=73.06 Aligned_cols=157 Identities=15% Similarity=0.100 Sum_probs=94.9
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhcCCc-cc-ccCccceeEEE-EEECCeEEEEEEcCC----------ChhhHHHHHhh
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKLGEI-VT-TTPTIGFNVEA-VEYKNKSFCVWDVGG----------QNKIRALWRHY 81 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~-~~-~~~~~~~~~~~-~~~~~~~~~i~d~~g----------~~~~~~~~~~~ 81 (181)
.++..+.++|.+++|||||+|.++.... .. ..++.|.+... ...-+..+.+.|.|| ..++......+
T Consensus 134 ~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~~~~~~vDlPG~~~a~y~~~~~~d~~~~t~~Y 213 (320)
T KOG2486|consen 134 DKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVGKSWYEVDLPGYGRAGYGFELPADWDKFTKSY 213 (320)
T ss_pred CCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeeccceEEEEecCCcccccCCccCcchHhHhHHHH
Confidence 5678999999999999999999988762 22 22355544332 223566788999999 12344444444
Q ss_pred cc---CCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC------HHHHHhhhCccc--cCC
Q 030233 82 FR---DTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMP------TAEVADKLELYS--LGQ 150 (181)
Q Consensus 82 ~~---~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~------~~~~~~~~~~~~--~~~ 150 (181)
+. +--.+++++|++.+ ++..+......+.+ .++|..+|+||||.....- ...+...+.... .-.
T Consensus 214 ~leR~nLv~~FLLvd~sv~--i~~~D~~~i~~~ge---~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~~f~ 288 (320)
T KOG2486|consen 214 LLERENLVRVFLLVDASVP--IQPTDNPEIAWLGE---NNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIRGVFL 288 (320)
T ss_pred HHhhhhhheeeeeeeccCC--CCCCChHHHHHHhh---cCCCeEEeeehhhhhhhccccccCccccceeehhhcccccee
Confidence 43 23456667777643 33333333333444 5899999999999754211 111111111000 011
Q ss_pred ccEEEEEeeccCCCCHHHHHHHHHhh
Q 030233 151 RRWSIQSCSAISGQGLYEGLDWLSNN 176 (181)
Q Consensus 151 ~~~~~~~~Sa~~~~~i~~l~~~i~~~ 176 (181)
...+++.+|+.++.|++++.-.+.+-
T Consensus 289 ~~~Pw~~~Ssvt~~Grd~Ll~~i~q~ 314 (320)
T KOG2486|consen 289 VDLPWIYVSSVTSLGRDLLLLHIAQL 314 (320)
T ss_pred ccCCceeeecccccCceeeeeehhhh
Confidence 23356789999999999987766543
No 348
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.89 E-value=5.2e-09 Score=75.71 Aligned_cols=56 Identities=16% Similarity=0.248 Sum_probs=43.2
Q ss_pred CccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEE-CCeEEEEEEcCCC
Q 030233 16 CRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEY-KNKSFCVWDVGGQ 71 (181)
Q Consensus 16 ~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~d~~g~ 71 (181)
..++++++|.+|+|||||+|++.+.......+.+|++.....+ -+..+.++||||.
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~~~~~l~DtPG~ 173 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIKLSDGLELLDTPGI 173 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEEEeCCCEEEEECCCc
Confidence 4689999999999999999999988766656666665544333 2246899999995
No 349
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.88 E-value=5.9e-09 Score=70.19 Aligned_cols=57 Identities=16% Similarity=0.256 Sum_probs=42.4
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEE-CCeEEEEEEcCCC
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEY-KNKSFCVWDVGGQ 71 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~d~~g~ 71 (181)
...++++++|.+++|||||+|++.+.......+..+++.....+ .+..+.++||||-
T Consensus 113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~iDtpG~ 170 (171)
T cd01856 113 PRGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKISPGIYLLDTPGI 170 (171)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEecCCEEEEECCCC
Confidence 34579999999999999999999988765555555554443322 1256899999993
No 350
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.88 E-value=4.3e-08 Score=67.81 Aligned_cols=123 Identities=12% Similarity=0.174 Sum_probs=71.4
Q ss_pred CccEEEEEcCCCCChHHHHHhhhcCCcccc-------cCccceeE---EE--EEEC--CeEEEEEEcCCChh--------
Q 030233 16 CRIKLLMVGLDASGKTTILYKMKLGEIVTT-------TPTIGFNV---EA--VEYK--NKSFCVWDVGGQNK-------- 73 (181)
Q Consensus 16 ~~~~i~~~G~~~~GKssl~~~~~~~~~~~~-------~~~~~~~~---~~--~~~~--~~~~~i~d~~g~~~-------- 73 (181)
..|+|+++|.+|.||||++|.+........ .|.+.+.. .. +.-. ..++.++||||..+
T Consensus 45 F~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncW 124 (336)
T KOG1547|consen 45 FDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCW 124 (336)
T ss_pred CceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchh
Confidence 489999999999999999999976542211 12111111 11 1112 35788999999221
Q ss_pred -------------hHH-----HHHhhcc--CCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 030233 74 -------------IRA-----LWRHYFR--DTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV 133 (181)
Q Consensus 74 -------------~~~-----~~~~~~~--~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~ 133 (181)
|.. .+...+. ..++++|.+..+. .++.-++..+.+-+.. -+.+|.|+-|+|-.--
T Consensus 125 ePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptG-hsLrplDieflkrLt~----vvNvvPVIakaDtlTl 199 (336)
T KOG1547|consen 125 EPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTG-HSLRPLDIEFLKRLTE----VVNVVPVIAKADTLTL 199 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCC-CccCcccHHHHHHHhh----hheeeeeEeecccccH
Confidence 111 1222222 3578888888773 4555544433332222 3668899999997654
Q ss_pred CCHHHHHhhh
Q 030233 134 MPTAEVADKL 143 (181)
Q Consensus 134 ~~~~~~~~~~ 143 (181)
+....++...
T Consensus 200 eEr~~FkqrI 209 (336)
T KOG1547|consen 200 EERSAFKQRI 209 (336)
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 351
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.87 E-value=4.6e-09 Score=78.64 Aligned_cols=99 Identities=21% Similarity=0.211 Sum_probs=65.1
Q ss_pred ChhhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC-CHHHHHhhhC--ccc
Q 030233 71 QNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVM-PTAEVADKLE--LYS 147 (181)
Q Consensus 71 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~-~~~~~~~~~~--~~~ 147 (181)
.+++..+...+.+.++++++|+|+.+..+ .|...+.+.. .+.|+++|+||+|+.+.. ..+.+..... ...
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~-----s~~~~l~~~~--~~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~ 122 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFEG-----SLIPELKRFV--GGNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKE 122 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCCC-----CccHHHHHHh--CCCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHH
Confidence 66788888888899999999999976431 1222222211 257999999999986532 2333332211 000
Q ss_pred cCCccEEEEEeeccCCCCHHHHHHHHHhh
Q 030233 148 LGQRRWSIQSCSAISGQGLYEGLDWLSNN 176 (181)
Q Consensus 148 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~ 176 (181)
.+.....++.+||++|.|++++++.+.+.
T Consensus 123 ~g~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 123 LGLKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred cCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 11111248999999999999999999764
No 352
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.87 E-value=6.7e-09 Score=71.10 Aligned_cols=55 Identities=20% Similarity=0.323 Sum_probs=40.3
Q ss_pred CccEEEEEcCCCCChHHHHHhhhcCCc--------ccccCccceeEEEEEEC-CeEEEEEEcCC
Q 030233 16 CRIKLLMVGLDASGKTTILYKMKLGEI--------VTTTPTIGFNVEAVEYK-NKSFCVWDVGG 70 (181)
Q Consensus 16 ~~~~i~~~G~~~~GKssl~~~~~~~~~--------~~~~~~~~~~~~~~~~~-~~~~~i~d~~g 70 (181)
...+++++|.+|+|||||+|++.+... ...++.+|++.....+. +..+.++||||
T Consensus 126 ~~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~DtPG 189 (190)
T cd01855 126 KGGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGNGKKLYDTPG 189 (190)
T ss_pred cCCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCCCCEEEeCcC
Confidence 346899999999999999999997542 23345556666554442 22689999999
No 353
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=9.8e-08 Score=74.70 Aligned_cols=146 Identities=14% Similarity=0.255 Sum_probs=86.8
Q ss_pred hCCCCccEEEEEcCCCCChHHHHHhhhcCCccc--ccCccce--------------------------------------
Q 030233 12 FFPQCRIKLLMVGLDASGKTTILYKMKLGEIVT--TTPTIGF-------------------------------------- 51 (181)
Q Consensus 12 ~~~~~~~~i~~~G~~~~GKssl~~~~~~~~~~~--~~~~~~~-------------------------------------- 51 (181)
.......+|++.|..++||||++|+++..+..+ ..+++..
T Consensus 104 ~l~r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~ 183 (749)
T KOG0448|consen 104 VLARRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPD 183 (749)
T ss_pred HHhhcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcc
Confidence 344667999999999999999999998755221 1121100
Q ss_pred ------eEEEEEEC-------CeEEEEEEcCCC---hhhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCC
Q 030233 52 ------NVEAVEYK-------NKSFCVWDVGGQ---NKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNE 115 (181)
Q Consensus 52 ------~~~~~~~~-------~~~~~i~d~~g~---~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~ 115 (181)
....+.+. ...+.+.|.||- ....+-...+..++|++|+|.++.+. +......+..-...
T Consensus 184 ~~~~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEnt--lt~sek~Ff~~vs~-- 259 (749)
T KOG0448|consen 184 KDLGAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENT--LTLSEKQFFHKVSE-- 259 (749)
T ss_pred cccCcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccH--hHHHHHHHHHHhhc--
Confidence 00011111 126789999994 33444566677789999999999654 44433333332233
Q ss_pred CCCCeEEEEEeCCCCCCCCC--HHHHHhhhC---ccccCCccEEEEEeeccC
Q 030233 116 LSNAALLVFANKQDLPNVMP--TAEVADKLE---LYSLGQRRWSIQSCSAIS 162 (181)
Q Consensus 116 ~~~~piilv~nK~D~~~~~~--~~~~~~~~~---~~~~~~~~~~~~~~Sa~~ 162 (181)
.++.+.++.||+|.....+ .+.+.+... -.......-.++++||+.
T Consensus 260 -~KpniFIlnnkwDasase~ec~e~V~~Qi~eL~v~~~~eA~DrvfFVS~~e 310 (749)
T KOG0448|consen 260 -EKPNIFILNNKWDASASEPECKEDVLKQIHELSVVTEKEAADRVFFVSAKE 310 (749)
T ss_pred -cCCcEEEEechhhhhcccHHHHHHHHHHHHhcCcccHhhhcCeeEEEeccc
Confidence 2666788889999865322 233444422 111223344688888654
No 354
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=98.85 E-value=6.5e-09 Score=78.77 Aligned_cols=130 Identities=24% Similarity=0.360 Sum_probs=98.2
Q ss_pred ccceeEEEEEE-CCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCCc----------ccHHHHHHHHHHHHcCCCC
Q 030233 48 TIGFNVEAVEY-KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDR----------ERISEARNELHQILSDNEL 116 (181)
Q Consensus 48 ~~~~~~~~~~~-~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~----------~s~~~~~~~~~~~~~~~~~ 116 (181)
|.|+....+.+ .+..+.++|++|+...+.-|..++.+++++|+|+++++- -.+.+....+..+......
T Consensus 222 T~Gi~e~~f~~~~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~ 301 (389)
T PF00503_consen 222 TTGITEIDFNFSGSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWF 301 (389)
T ss_dssp -SSEEEEEEEE-TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGG
T ss_pred CCCeeEEEEEeecccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCccc
Confidence 67888888888 999999999999998889999999999999999998742 2477778889999998888
Q ss_pred CCCeEEEEEeCCCCCC-----CC---------------CHHHHHhhhC----ccccCC---ccEEEEEeeccCCCCHHHH
Q 030233 117 SNAALLVFANKQDLPN-----VM---------------PTAEVADKLE----LYSLGQ---RRWSIQSCSAISGQGLYEG 169 (181)
Q Consensus 117 ~~~piilv~nK~D~~~-----~~---------------~~~~~~~~~~----~~~~~~---~~~~~~~~Sa~~~~~i~~l 169 (181)
.+.|+|+++||.|+.. .+ +.+.....+. ...... +.+.+..++|.+.+++..+
T Consensus 302 ~~~~iil~lnK~D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v 381 (389)
T PF00503_consen 302 KNTPIILFLNKIDLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKV 381 (389)
T ss_dssp TTSEEEEEEE-HHHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHH
T ss_pred ccCceEEeeecHHHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHH
Confidence 8999999999999632 11 1122222111 111111 5667889999999999999
Q ss_pred HHHHHhhh
Q 030233 170 LDWLSNNI 177 (181)
Q Consensus 170 ~~~i~~~~ 177 (181)
|+.+.+.+
T Consensus 382 ~~~v~~~i 389 (389)
T PF00503_consen 382 FNAVKDII 389 (389)
T ss_dssp HHHHHHHH
T ss_pred HHHhcCcC
Confidence 99987653
No 355
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.83 E-value=1.7e-08 Score=66.86 Aligned_cols=82 Identities=17% Similarity=0.121 Sum_probs=53.8
Q ss_pred CEEEEEEECCCcccHHHHHHHHH-HHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCC
Q 030233 86 LGLTFVVDSSDRERISEARNELH-QILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQ 164 (181)
Q Consensus 86 d~ii~v~d~~~~~s~~~~~~~~~-~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (181)
|++++|+|+.++.+... .++. ..+.. .+.|+++|+||+|+.+..........+. ......++.+||++|.
T Consensus 1 Dvvl~VvD~~~p~~~~~--~~i~~~~~~~---~~~p~IiVlNK~Dl~~~~~~~~~~~~~~----~~~~~~ii~vSa~~~~ 71 (155)
T cd01849 1 DVILEVLDARDPLGTRS--PDIERVLIKE---KGKKLILVLNKADLVPKEVLRKWLAYLR----HSYPTIPFKISATNGQ 71 (155)
T ss_pred CEEEEEEeccCCccccC--HHHHHHHHhc---CCCCEEEEEechhcCCHHHHHHHHHHHH----hhCCceEEEEeccCCc
Confidence 68999999987754432 2333 22222 4789999999999965321122111121 1123468999999999
Q ss_pred CHHHHHHHHHhh
Q 030233 165 GLYEGLDWLSNN 176 (181)
Q Consensus 165 ~i~~l~~~i~~~ 176 (181)
|++++.+.+.+.
T Consensus 72 gi~~L~~~i~~~ 83 (155)
T cd01849 72 GIEKKESAFTKQ 83 (155)
T ss_pred ChhhHHHHHHHH
Confidence 999999988654
No 356
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.77 E-value=2.1e-08 Score=66.43 Aligned_cols=56 Identities=14% Similarity=0.187 Sum_probs=39.4
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEE-CCeEEEEEEcCC
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEY-KNKSFCVWDVGG 70 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~d~~g 70 (181)
....+++++|.+|+|||||+|++.+..........+++...... .+..+.++||||
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtPG 154 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVKLDNKIKLLDTPG 154 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEEecCCEEEEECCC
Confidence 35688999999999999999999987643333333333332222 235689999999
No 357
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.76 E-value=2.6e-08 Score=72.10 Aligned_cols=99 Identities=17% Similarity=0.137 Sum_probs=64.6
Q ss_pred cCCCh-hhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCcc
Q 030233 68 VGGQN-KIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELY 146 (181)
Q Consensus 68 ~~g~~-~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~ 146 (181)
.|||. +........+..+|++++|+|+..+.+-.. ..+...+ .+.|+++|+||+|+.+........+.+.
T Consensus 4 fpgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~--~~i~~~l-----~~kp~IiVlNK~DL~~~~~~~~~~~~~~-- 74 (276)
T TIGR03596 4 FPGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRN--PMIDEIR-----GNKPRLIVLNKADLADPAVTKQWLKYFE-- 74 (276)
T ss_pred ChHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCC--hhHHHHH-----CCCCEEEEEEccccCCHHHHHHHHHHHH--
Confidence 35643 233456677889999999999976643221 2333333 2579999999999864221222222221
Q ss_pred ccCCccEEEEEeeccCCCCHHHHHHHHHhhhh
Q 030233 147 SLGQRRWSIQSCSAISGQGLYEGLDWLSNNIS 178 (181)
Q Consensus 147 ~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~ 178 (181)
..+..++.+||+++.|++++.+.+.+.+.
T Consensus 75 ---~~~~~vi~iSa~~~~gi~~L~~~i~~~~~ 103 (276)
T TIGR03596 75 ---EKGIKALAINAKKGKGVKKIIKAAKKLLK 103 (276)
T ss_pred ---HcCCeEEEEECCCcccHHHHHHHHHHHHH
Confidence 12236899999999999999998877654
No 358
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=98.76 E-value=1.3e-08 Score=80.24 Aligned_cols=105 Identities=16% Similarity=0.190 Sum_probs=74.7
Q ss_pred cEEEEEcCCCCChHHHHHhhhcCC------------ccc---ccCccceeEEE--EEE--CCeEEEEEEcCCChhhHHHH
Q 030233 18 IKLLMVGLDASGKTTILYKMKLGE------------IVT---TTPTIGFNVEA--VEY--KNKSFCVWDVGGQNKIRALW 78 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~~~------------~~~---~~~~~~~~~~~--~~~--~~~~~~i~d~~g~~~~~~~~ 78 (181)
=+++++-+...|||||+.+++..+ +.+ ...+.|++-.. +.+ .++.+.++|+|||.+|.+..
T Consensus 10 rn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf~sev 89 (887)
T KOG0467|consen 10 RNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFSSEV 89 (887)
T ss_pred eEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccchhhhh
Confidence 369999999999999999987543 111 11223332221 223 78899999999999999999
Q ss_pred HhhccCCCEEEEEEECCCc---ccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCC
Q 030233 79 RHYFRDTLGLTFVVDSSDR---ERISEARNELHQILSDNELSNAALLVFANKQDL 130 (181)
Q Consensus 79 ~~~~~~~d~ii~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~ 130 (181)
....+-+|+.++++|+... .+..-+++.| ..+..+++|+||+|.
T Consensus 90 ssas~l~d~alvlvdvvegv~~qt~~vlrq~~--------~~~~~~~lvinkidr 136 (887)
T KOG0467|consen 90 SSASRLSDGALVLVDVVEGVCSQTYAVLRQAW--------IEGLKPILVINKIDR 136 (887)
T ss_pred hhhhhhcCCcEEEEeeccccchhHHHHHHHHH--------HccCceEEEEehhhh
Confidence 9999999999999999743 1222222222 246778999999993
No 359
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.73 E-value=3.3e-08 Score=76.37 Aligned_cols=110 Identities=17% Similarity=0.161 Sum_probs=76.6
Q ss_pred EEEEEcCCCCChHHHHHhhhcCC-----cc---c-------------ccCccceeEEEEEECCeEEEEEEcCCChhhHHH
Q 030233 19 KLLMVGLDASGKTTILYKMKLGE-----IV---T-------------TTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRAL 77 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~~~-----~~---~-------------~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~ 77 (181)
+|.+.-+-.+||||+-++++.-. +. . ...|+......+.+.+.++.++|||||-+|--.
T Consensus 41 NIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDFT~E 120 (721)
T KOG0465|consen 41 NIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDFTFE 120 (721)
T ss_pred ccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeEEEE
Confidence 58899999999999999886421 00 0 111222223345668999999999999998888
Q ss_pred HHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 030233 78 WRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV 133 (181)
Q Consensus 78 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~ 133 (181)
.+..++-.|+.++++|.... .+.......+.+.+ .++|-|.++||+|....
T Consensus 121 VeRALrVlDGaVlvl~aV~G--VqsQt~tV~rQ~~r---y~vP~i~FiNKmDRmGa 171 (721)
T KOG0465|consen 121 VERALRVLDGAVLVLDAVAG--VESQTETVWRQMKR---YNVPRICFINKMDRMGA 171 (721)
T ss_pred ehhhhhhccCeEEEEEcccc--eehhhHHHHHHHHh---cCCCeEEEEehhhhcCC
Confidence 88889999999999998632 22222222222333 47999999999997543
No 360
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.72 E-value=4.8e-07 Score=63.52 Aligned_cols=81 Identities=15% Similarity=0.077 Sum_probs=52.2
Q ss_pred ccEEEEEcCCCCChHHHHHhhhcC--Ccccc----cCccceeEEEEEE---CCeEEEEEEcCCChhh------HHHHHhh
Q 030233 17 RIKLLMVGLDASGKTTILYKMKLG--EIVTT----TPTIGFNVEAVEY---KNKSFCVWDVGGQNKI------RALWRHY 81 (181)
Q Consensus 17 ~~~i~~~G~~~~GKssl~~~~~~~--~~~~~----~~~~~~~~~~~~~---~~~~~~i~d~~g~~~~------~~~~~~~ 81 (181)
-.-|+++|++++|||+|+|++++. .+... ..|.|+-...... .+..+.++||+|.... .......
T Consensus 7 v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~~~ 86 (224)
T cd01851 7 VAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARLFA 86 (224)
T ss_pred EEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHHHH
Confidence 356899999999999999999998 44432 2233333222222 3578999999994322 1122222
Q ss_pred cc--CCCEEEEEEECCCc
Q 030233 82 FR--DTLGLTFVVDSSDR 97 (181)
Q Consensus 82 ~~--~~d~ii~v~d~~~~ 97 (181)
+. -++++||..+....
T Consensus 87 l~~llss~~i~n~~~~~~ 104 (224)
T cd01851 87 LATLLSSVLIYNSWETIL 104 (224)
T ss_pred HHHHHhCEEEEeccCccc
Confidence 23 37888888877643
No 361
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.71 E-value=5.3e-08 Score=65.55 Aligned_cols=90 Identities=19% Similarity=0.116 Sum_probs=58.8
Q ss_pred HHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEE
Q 030233 76 ALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSI 155 (181)
Q Consensus 76 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (181)
......+.++|.+++|+|+.++..-.. ..+...+ .+.|+++|+||+|+.+........+.+. .....+
T Consensus 11 ~~~~~~i~~aD~il~v~D~~~~~~~~~--~~i~~~~-----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~-----~~~~~v 78 (171)
T cd01856 11 RQIKEKLKLVDLVIEVRDARIPLSSRN--PLLEKIL-----GNKPRIIVLNKADLADPKKTKKWLKYFE-----SKGEKV 78 (171)
T ss_pred HHHHHHHhhCCEEEEEeeccCccCcCC--hhhHhHh-----cCCCEEEEEehhhcCChHHHHHHHHHHH-----hcCCeE
Confidence 445667788999999999986543211 1122211 2478999999999864321112112111 112358
Q ss_pred EEeeccCCCCHHHHHHHHHhhh
Q 030233 156 QSCSAISGQGLYEGLDWLSNNI 177 (181)
Q Consensus 156 ~~~Sa~~~~~i~~l~~~i~~~~ 177 (181)
+.+||++++|++++.+.+.+.+
T Consensus 79 i~iSa~~~~gi~~L~~~l~~~l 100 (171)
T cd01856 79 LFVNAKSGKGVKKLLKAAKKLL 100 (171)
T ss_pred EEEECCCcccHHHHHHHHHHHH
Confidence 9999999999999999988764
No 362
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.68 E-value=6.5e-08 Score=63.02 Aligned_cols=80 Identities=13% Similarity=0.113 Sum_probs=49.2
Q ss_pred HHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEE
Q 030233 78 WRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQS 157 (181)
Q Consensus 78 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (181)
....+..+|++++|+|+.++.+.. ...+...+.... .+.|+++|+||+|+.++.........+ ...+..+++
T Consensus 5 ~~~~i~~aD~vl~ViD~~~p~~~~--~~~l~~~l~~~~-~~k~~iivlNK~DL~~~~~~~~~~~~~-----~~~~~~ii~ 76 (141)
T cd01857 5 LWRVVERSDIVVQIVDARNPLLFR--PPDLERYVKEVD-PRKKNILLLNKADLLTEEQRKAWAEYF-----KKEGIVVVF 76 (141)
T ss_pred HHHHHhhCCEEEEEEEccCCcccC--CHHHHHHHHhcc-CCCcEEEEEechhcCCHHHHHHHHHHH-----HhcCCeEEE
Confidence 345677899999999998775433 112222222211 468999999999986532222222222 122347899
Q ss_pred eeccCCCC
Q 030233 158 CSAISGQG 165 (181)
Q Consensus 158 ~Sa~~~~~ 165 (181)
+||.++++
T Consensus 77 iSa~~~~~ 84 (141)
T cd01857 77 FSALKENA 84 (141)
T ss_pred EEecCCCc
Confidence 99998764
No 363
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.67 E-value=1.1e-07 Score=69.84 Aligned_cols=152 Identities=22% Similarity=0.275 Sum_probs=93.6
Q ss_pred ccEEEEEcCCCCChHHHHHhhhcCCcccc------------------------cCccceeEEE--EEE------------
Q 030233 17 RIKLLMVGLDASGKTTILYKMKLGEIVTT------------------------TPTIGFNVEA--VEY------------ 58 (181)
Q Consensus 17 ~~~i~~~G~~~~GKssl~~~~~~~~~~~~------------------------~~~~~~~~~~--~~~------------ 58 (181)
.++++++|...+|||||+-.+..+...+. ..++|++..- ++|
T Consensus 167 evRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e~ 246 (591)
T KOG1143|consen 167 EVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVEK 246 (591)
T ss_pred EEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHhh
Confidence 57999999999999999987765432210 1123332221 222
Q ss_pred CCeEEEEEEcCCChhhHHHHHhhcc--CCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH
Q 030233 59 KNKSFCVWDVGGQNKIRALWRHYFR--DTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPT 136 (181)
Q Consensus 59 ~~~~~~i~d~~g~~~~~~~~~~~~~--~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~ 136 (181)
...-+.++|.+|+.+|.......+. ..|...+|+++...-... .++-+-.++. -++|.+++++|+|+......
T Consensus 247 SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~t-TrEHLgl~~A----L~iPfFvlvtK~Dl~~~~~~ 321 (591)
T KOG1143|consen 247 SSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWT-TREHLGLIAA----LNIPFFVLVTKMDLVDRQGL 321 (591)
T ss_pred hcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccc-cHHHHHHHHH----hCCCeEEEEEeeccccchhH
Confidence 2346899999999999876554444 368888888886432111 1222222222 37999999999999775333
Q ss_pred HH----HHhhhCcc---------------------ccCCccEEEEEeeccCCCCHHHHHHHH
Q 030233 137 AE----VADKLELY---------------------SLGQRRWSIQSCSAISGQGLYEGLDWL 173 (181)
Q Consensus 137 ~~----~~~~~~~~---------------------~~~~~~~~~~~~Sa~~~~~i~~l~~~i 173 (181)
+. ++..+... .......++|-+|..+|+|++-+-..+
T Consensus 322 ~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~fL 383 (591)
T KOG1143|consen 322 KKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRTFL 383 (591)
T ss_pred HHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHHHH
Confidence 22 22222110 002246689999999999998765443
No 364
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=98.64 E-value=2.8e-08 Score=73.34 Aligned_cols=158 Identities=17% Similarity=0.151 Sum_probs=102.4
Q ss_pred CCCccEEEEEcCCCCChHHHHHhhhcCC----------------------------------cccccCccceeEEEEEEC
Q 030233 14 PQCRIKLLMVGLDASGKTTILYKMKLGE----------------------------------IVTTTPTIGFNVEAVEYK 59 (181)
Q Consensus 14 ~~~~~~i~~~G~~~~GKssl~~~~~~~~----------------------------------~~~~~~~~~~~~~~~~~~ 59 (181)
|....++.++|+...||||+-..++... ......|.+.....+...
T Consensus 76 pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte 155 (501)
T KOG0459|consen 76 PKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETE 155 (501)
T ss_pred CCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEec
Confidence 4677899999999999999987775411 001123455555566668
Q ss_pred CeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCC---cccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC-
Q 030233 60 NKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSD---RERISEARNELHQILSDNELSNAALLVFANKQDLPNVMP- 135 (181)
Q Consensus 60 ~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~- 135 (181)
...+.+.|+||+..|-.....-..++|.-++|+++.. +..|+.--+..+..+......-...|+++||+|.+...-
T Consensus 156 ~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtvnWs 235 (501)
T KOG0459|consen 156 NKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWS 235 (501)
T ss_pred ceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCccCcc
Confidence 8899999999999988877777788999999998842 123332222222222222224567899999999764211
Q ss_pred ---HHH----HHhhhC-ccccCCccEEEEEeeccCCCCHHHHHH
Q 030233 136 ---TAE----VADKLE-LYSLGQRRWSIQSCSAISGQGLYEGLD 171 (181)
Q Consensus 136 ---~~~----~~~~~~-~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 171 (181)
.++ +...+. +..-......|+++|..+|.++.+...
T Consensus 236 ~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~ 279 (501)
T KOG0459|consen 236 NERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD 279 (501)
T ss_pred hhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence 111 111221 111133567899999999999987543
No 365
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.62 E-value=5.3e-07 Score=69.69 Aligned_cols=139 Identities=13% Similarity=0.075 Sum_probs=82.1
Q ss_pred CccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEECCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECC
Q 030233 16 CRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSS 95 (181)
Q Consensus 16 ~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~ 95 (181)
.++-++++|+||+|||||+.+++..-...+...+.--...+......+++.+.|. +..++ .....-+|.+++++|.+
T Consensus 68 PPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GPiTvvsgK~RRiTflEcp~--Dl~~m-iDvaKIaDLVlLlIdgn 144 (1077)
T COG5192 68 PPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPITVVSGKTRRITFLECPS--DLHQM-IDVAKIADLVLLLIDGN 144 (1077)
T ss_pred CCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCceEEeecceeEEEEEeChH--HHHHH-HhHHHhhheeEEEeccc
Confidence 3567889999999999999999875422211111001112333567889999993 33333 33455689999999996
Q ss_pred CcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC-HHHHHhhhCcccc--CCccEEEEEeecc
Q 030233 96 DRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMP-TAEVADKLELYSL--GQRRWSIQSCSAI 161 (181)
Q Consensus 96 ~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~Sa~ 161 (181)
= +|.-..-.+..++.++ .-+.++-|++..|+....+ ....++.+..... -..++.+|..|-.
T Consensus 145 f--GfEMETmEFLnil~~H--GmPrvlgV~ThlDlfk~~stLr~~KKrlkhRfWtEiyqGaKlFylsgV 209 (1077)
T COG5192 145 F--GFEMETMEFLNILISH--GMPRVLGVVTHLDLFKNPSTLRSIKKRLKHRFWTEIYQGAKLFYLSGV 209 (1077)
T ss_pred c--CceehHHHHHHHHhhc--CCCceEEEEeecccccChHHHHHHHHHHhhhHHHHHcCCceEEEeccc
Confidence 3 3433333444555542 2344667889999976544 3444443332211 1245567777754
No 366
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.61 E-value=3.5e-07 Score=68.08 Aligned_cols=78 Identities=19% Similarity=0.092 Sum_probs=54.1
Q ss_pred cEEEEEcCCCCChHHHHHhhhcCCc-cc--c-cCccceeEEEEEEC-----------------CeEEEEEEcCCChh---
Q 030233 18 IKLLMVGLDASGKTTILYKMKLGEI-VT--T-TPTIGFNVEAVEYK-----------------NKSFCVWDVGGQNK--- 73 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~~~~-~~--~-~~~~~~~~~~~~~~-----------------~~~~~i~d~~g~~~--- 73 (181)
++++++|.|++|||||+|.+.+... .. + ..|...+...+... ...+.+.|.||-..
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 7899999999999999999988764 21 1 12233333334332 24789999999432
Q ss_pred ----hHHHHHhhccCCCEEEEEEECC
Q 030233 74 ----IRALWRHYFRDTLGLTFVVDSS 95 (181)
Q Consensus 74 ----~~~~~~~~~~~~d~ii~v~d~~ 95 (181)
........++.+|++++|++..
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCC
Confidence 2223455677899999999984
No 367
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.58 E-value=1.3e-07 Score=70.84 Aligned_cols=55 Identities=22% Similarity=0.414 Sum_probs=41.0
Q ss_pred cEEEEEcCCCCChHHHHHhhhcCCc-----ccccCccceeEEEEEEC-CeEEEEEEcCCCh
Q 030233 18 IKLLMVGLDASGKTTILYKMKLGEI-----VTTTPTIGFNVEAVEYK-NKSFCVWDVGGQN 72 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~~~~-----~~~~~~~~~~~~~~~~~-~~~~~i~d~~g~~ 72 (181)
.+++++|.+|+|||||+|++++... ...++.++++.....+. +..+.++||||-.
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~~~~~l~DtPG~~ 215 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDDGHSLYDTPGII 215 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeCCCCEEEECCCCC
Confidence 5899999999999999999998542 34455666666555443 2456899999954
No 368
>PRK13796 GTPase YqeH; Provisional
Probab=98.56 E-value=1.7e-07 Score=70.45 Aligned_cols=55 Identities=20% Similarity=0.363 Sum_probs=40.2
Q ss_pred ccEEEEEcCCCCChHHHHHhhhcCC-----cccccCccceeEEEEEE-CCeEEEEEEcCCC
Q 030233 17 RIKLLMVGLDASGKTTILYKMKLGE-----IVTTTPTIGFNVEAVEY-KNKSFCVWDVGGQ 71 (181)
Q Consensus 17 ~~~i~~~G~~~~GKssl~~~~~~~~-----~~~~~~~~~~~~~~~~~-~~~~~~i~d~~g~ 71 (181)
.-++.++|.+|+|||||+|++.+.. ....++.+|++.....+ -+....++||||-
T Consensus 160 ~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~~~l~DTPGi 220 (365)
T PRK13796 160 GRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDGSFLYDTPGI 220 (365)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCCcEEEECCCc
Confidence 3579999999999999999998643 22345666777666554 1233579999995
No 369
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.55 E-value=1.6e-07 Score=66.74 Aligned_cols=53 Identities=13% Similarity=0.175 Sum_probs=33.8
Q ss_pred cEEEEEcCCCCChHHHHHhhhcCCcccccCcc---c----eeEEE--EEECCeEEEEEEcCCCh
Q 030233 18 IKLLMVGLDASGKTTILYKMKLGEIVTTTPTI---G----FNVEA--VEYKNKSFCVWDVGGQN 72 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~---~----~~~~~--~~~~~~~~~i~d~~g~~ 72 (181)
-.++++|.+|+|||||+|++.+.......... + ++... +... .-.++||||-.
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l~--~~~liDtPG~~ 182 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHFH--GGLIADTPGFN 182 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEcC--CcEEEeCCCcc
Confidence 36899999999999999999986532221111 1 22222 2222 33799999943
No 370
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.55 E-value=2.3e-07 Score=67.58 Aligned_cols=100 Identities=18% Similarity=0.131 Sum_probs=64.8
Q ss_pred EcCCChh-hHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCc
Q 030233 67 DVGGQNK-IRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLEL 145 (181)
Q Consensus 67 d~~g~~~-~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~ 145 (181)
-.|||.. -.......+..+|++++|+|+.++.+-. ...+...+. +.|+++|+||+|+.+....+...+.+.
T Consensus 6 wfpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~--~~~l~~~~~-----~kp~iiVlNK~DL~~~~~~~~~~~~~~- 77 (287)
T PRK09563 6 WFPGHMAKARREIKENLKLVDVVIEVLDARIPLSSE--NPMIDKIIG-----NKPRLLILNKSDLADPEVTKKWIEYFE- 77 (287)
T ss_pred CcHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCC--ChhHHHHhC-----CCCEEEEEEchhcCCHHHHHHHHHHHH-
Confidence 3566533 2344566778999999999997664322 123333332 579999999999864221222222221
Q ss_pred cccCCccEEEEEeeccCCCCHHHHHHHHHhhhh
Q 030233 146 YSLGQRRWSIQSCSAISGQGLYEGLDWLSNNIS 178 (181)
Q Consensus 146 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~ 178 (181)
..+.+++.+||+++.|++++.+.+.+.+.
T Consensus 78 ----~~~~~vi~vSa~~~~gi~~L~~~l~~~l~ 106 (287)
T PRK09563 78 ----EQGIKALAINAKKGQGVKKILKAAKKLLK 106 (287)
T ss_pred ----HcCCeEEEEECCCcccHHHHHHHHHHHHH
Confidence 11246899999999999999998877654
No 371
>PRK12289 GTPase RsgA; Reviewed
Probab=98.54 E-value=2.6e-07 Score=68.79 Aligned_cols=52 Identities=15% Similarity=0.165 Sum_probs=34.7
Q ss_pred EEEEEcCCCCChHHHHHhhhcCCcccccCccc-------eeEEE--EEECCeEEEEEEcCCC
Q 030233 19 KLLMVGLDASGKTTILYKMKLGEIVTTTPTIG-------FNVEA--VEYKNKSFCVWDVGGQ 71 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~-------~~~~~--~~~~~~~~~i~d~~g~ 71 (181)
.++++|.+|+|||||+|++++..........+ ++... +...+ ...++||||-
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~-g~~liDTPG~ 234 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPN-GGLLADTPGF 234 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCC-CcEEEeCCCc
Confidence 37999999999999999999876443333333 22222 22222 2379999993
No 372
>PRK13796 GTPase YqeH; Provisional
Probab=98.53 E-value=5.7e-07 Score=67.61 Aligned_cols=99 Identities=24% Similarity=0.199 Sum_probs=58.3
Q ss_pred hhhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC-CHHHHHhhhCcc--cc
Q 030233 72 NKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVM-PTAEVADKLELY--SL 148 (181)
Q Consensus 72 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~-~~~~~~~~~~~~--~~ 148 (181)
+++.............+++|+|+.+..+ .....+..+. .+.|+++|+||+|+.+.. ..+.+....... ..
T Consensus 57 ~~~~~~l~~i~~~~~lIv~VVD~~D~~~--s~~~~L~~~~-----~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~ 129 (365)
T PRK13796 57 DDFLKLLNGIGDSDALVVNVVDIFDFNG--SWIPGLHRFV-----GNNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKEL 129 (365)
T ss_pred HHHHHHHHhhcccCcEEEEEEECccCCC--chhHHHHHHh-----CCCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhc
Confidence 4555544444333448999999976321 1122222222 257899999999997532 222332221110 00
Q ss_pred CCccEEEEEeeccCCCCHHHHHHHHHhhh
Q 030233 149 GQRRWSIQSCSAISGQGLYEGLDWLSNNI 177 (181)
Q Consensus 149 ~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~ 177 (181)
+.....++.+||++|.|++++++.+.+..
T Consensus 130 g~~~~~v~~vSAk~g~gI~eL~~~I~~~~ 158 (365)
T PRK13796 130 GLRPVDVVLISAQKGHGIDELLEAIEKYR 158 (365)
T ss_pred CCCcCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 11112589999999999999999997654
No 373
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.52 E-value=1.3e-06 Score=74.71 Aligned_cols=110 Identities=19% Similarity=0.262 Sum_probs=64.9
Q ss_pred EEEEcCCCCChHHHHHhhhcCCcccc-----cCc--cceeEEEEEE-CCeEEEEEEcCCC--------hhhHHHHHhhc-
Q 030233 20 LLMVGLDASGKTTILYKMKLGEIVTT-----TPT--IGFNVEAVEY-KNKSFCVWDVGGQ--------NKIRALWRHYF- 82 (181)
Q Consensus 20 i~~~G~~~~GKssl~~~~~~~~~~~~-----~~~--~~~~~~~~~~-~~~~~~i~d~~g~--------~~~~~~~~~~~- 82 (181)
.+++|++|+||||++++- |-.++-. ..+ .+-+. .+.+ -...-.++||+|. +.....|..++
T Consensus 114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~-~c~wwf~~~avliDtaG~y~~~~~~~~~~~~~W~~fL~ 191 (1169)
T TIGR03348 114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTR-NCDWWFTDEAVLIDTAGRYTTQDSDPEEDAAAWLGFLG 191 (1169)
T ss_pred EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCc-ccceEecCCEEEEcCCCccccCCCcccccHHHHHHHHH
Confidence 699999999999999877 3333221 111 11111 1211 2234459999991 12233344433
Q ss_pred --------cCCCEEEEEEECCCc-----ccH----HHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 030233 83 --------RDTLGLTFVVDSSDR-----ERI----SEARNELHQILSDNELSNAALLVFANKQDLPN 132 (181)
Q Consensus 83 --------~~~d~ii~v~d~~~~-----~s~----~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~ 132 (181)
+..+++|+++|+.+- +.. ..++..+.++.+. -....||.++++|+|+..
T Consensus 192 ~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~-lg~~~PVYvv~Tk~Dll~ 257 (1169)
T TIGR03348 192 LLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQ-LGARFPVYLVLTKADLLA 257 (1169)
T ss_pred HHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHH-hCCCCCEEEEEecchhhc
Confidence 357999999998642 111 2333444444333 225799999999999874
No 374
>PRK12288 GTPase RsgA; Reviewed
Probab=98.51 E-value=1.9e-07 Score=69.49 Aligned_cols=54 Identities=13% Similarity=0.155 Sum_probs=33.9
Q ss_pred EEEEEcCCCCChHHHHHhhhcCCcccccCccc-------eeEEE--EEECCeEEEEEEcCCChh
Q 030233 19 KLLMVGLDASGKTTILYKMKLGEIVTTTPTIG-------FNVEA--VEYKNKSFCVWDVGGQNK 73 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~-------~~~~~--~~~~~~~~~i~d~~g~~~ 73 (181)
.++++|.+|+|||||+|+|++..........+ ++... +.+.. ...++||||-..
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~-~~~liDTPGir~ 269 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPH-GGDLIDSPGVRE 269 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecC-CCEEEECCCCCc
Confidence 37999999999999999999876333222211 12111 22222 235999999443
No 375
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.47 E-value=1.3e-06 Score=58.07 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=19.3
Q ss_pred EEEEEcCCCCChHHHHHhhhcC
Q 030233 19 KLLMVGLDASGKTTILYKMKLG 40 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~~ 40 (181)
-+.+.|..|+|||||+++++..
T Consensus 2 ~~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 2 VTVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred EEEEEECCCCCHHHHHHHHHhc
Confidence 3679999999999999998765
No 376
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.46 E-value=6.5e-07 Score=63.39 Aligned_cols=112 Identities=14% Similarity=0.201 Sum_probs=72.4
Q ss_pred CccEEEEEcCCCCChHHHHHhhhcCCcccc-----cCccceeEEEEEE----CCeEEEEEEcCCCh-------hh-----
Q 030233 16 CRIKLLMVGLDASGKTTILYKMKLGEIVTT-----TPTIGFNVEAVEY----KNKSFCVWDVGGQN-------KI----- 74 (181)
Q Consensus 16 ~~~~i~~~G~~~~GKssl~~~~~~~~~~~~-----~~~~~~~~~~~~~----~~~~~~i~d~~g~~-------~~----- 74 (181)
..++|+.+|..|.|||||+..+.+..+... .|+......++.. -..++.+.||.|.. .|
T Consensus 41 F~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iVd 120 (406)
T KOG3859|consen 41 FCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIVD 120 (406)
T ss_pred ceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHHH
Confidence 379999999999999999999998775432 2233332223322 23578899999821 11
Q ss_pred --HHHHHhhc-------------c--CCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 030233 75 --RALWRHYF-------------R--DTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPN 132 (181)
Q Consensus 75 --~~~~~~~~-------------~--~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~ 132 (181)
.++.+.++ + ..++++|.+..+ ..++..++....+-+. .++.||.++-|.|-..
T Consensus 121 yidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PT-GH~LKslDLvtmk~Ld----skVNIIPvIAKaDtis 190 (406)
T KOG3859|consen 121 YIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPT-GHSLKSLDLVTMKKLD----SKVNIIPVIAKADTIS 190 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCC-CcchhHHHHHHHHHHh----hhhhhHHHHHHhhhhh
Confidence 11111111 1 357888888887 4677777665544443 3677888889999655
No 377
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.46 E-value=2.5e-07 Score=61.07 Aligned_cols=24 Identities=13% Similarity=0.300 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCChHHHHHhhhcCC
Q 030233 18 IKLLMVGLDASGKTTILYKMKLGE 41 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~~~ 41 (181)
-.++++|++|+|||||+|.+.+..
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc
Confidence 468999999999999999999875
No 378
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.46 E-value=9.5e-07 Score=64.16 Aligned_cols=81 Identities=23% Similarity=0.214 Sum_probs=54.7
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhcCCccc---ccCccceeEEEEEE-----------------CCeEEEEEEcCCChh-
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKLGEIVT---TTPTIGFNVEAVEY-----------------KNKSFCVWDVGGQNK- 73 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~~---~~~~~~~~~~~~~~-----------------~~~~~~i~d~~g~~~- 73 (181)
..+++++++|.|++|||||+|.+.+..... ...|+.-+..++.. ....++++|++|.-+
T Consensus 18 ~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkG 97 (391)
T KOG1491|consen 18 GNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKG 97 (391)
T ss_pred CCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccC
Confidence 467899999999999999999998766331 12233333333332 336799999998322
Q ss_pred ---h---HHHHHhhccCCCEEEEEEECC
Q 030233 74 ---I---RALWRHYFRDTLGLTFVVDSS 95 (181)
Q Consensus 74 ---~---~~~~~~~~~~~d~ii~v~d~~ 95 (181)
. ..-...-++.+|+++-|+++.
T Consensus 98 As~G~GLGN~FLs~iR~vDaifhVVr~f 125 (391)
T KOG1491|consen 98 ASAGEGLGNKFLSHIRHVDAIFHVVRAF 125 (391)
T ss_pred cccCcCchHHHHHhhhhccceeEEEEec
Confidence 1 222444557789999988775
No 379
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.44 E-value=1.4e-07 Score=67.62 Aligned_cols=157 Identities=14% Similarity=0.130 Sum_probs=96.2
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhcCCccc------ccCc--cceeEEEE---------------------------EE-
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKLGEIVT------TTPT--IGFNVEAV---------------------------EY- 58 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~~------~~~~--~~~~~~~~---------------------------~~- 58 (181)
+-.++|.-+|+.-.||||++..+.|-.... ...| +|+....+ +.
T Consensus 36 QATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~~ 115 (466)
T KOG0466|consen 36 QATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDRP 115 (466)
T ss_pred eeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCcccC
Confidence 457999999999999999999997743111 1111 11111000 00
Q ss_pred -------CCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCCcccHHHHHH--HHHHHHcCCCCCCCeEEEEEeCCC
Q 030233 59 -------KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARN--ELHQILSDNELSNAALLVFANKQD 129 (181)
Q Consensus 59 -------~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~--~~~~~~~~~~~~~~piilv~nK~D 129 (181)
--..+.+.|.||++-.-+....-..-.|+.++++..+....-.+..+ ..-++++. ..++++-||.|
T Consensus 116 g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~L-----khiiilQNKiD 190 (466)
T KOG0466|consen 116 GCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMKL-----KHIIILQNKID 190 (466)
T ss_pred CCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhhh-----ceEEEEechhh
Confidence 01357899999987654443333333577888887765321111111 11222222 45788899999
Q ss_pred CCCCCCHH----HHHhhhCccccCCccEEEEEeeccCCCCHHHHHHHHHhhhh
Q 030233 130 LPNVMPTA----EVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNIS 178 (181)
Q Consensus 130 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~ 178 (181)
+..+.+.. ++.++..-. ...+.+++++||.-..|++-+.++|.+++.
T Consensus 191 li~e~~A~eq~e~I~kFi~~t--~ae~aPiiPisAQlkyNId~v~eyivkkIP 241 (466)
T KOG0466|consen 191 LIKESQALEQHEQIQKFIQGT--VAEGAPIIPISAQLKYNIDVVCEYIVKKIP 241 (466)
T ss_pred hhhHHHHHHHHHHHHHHHhcc--ccCCCceeeehhhhccChHHHHHHHHhcCC
Confidence 98754433 333333222 335668999999999999999999999875
No 380
>PRK14974 cell division protein FtsY; Provisional
Probab=98.43 E-value=4.7e-06 Score=61.72 Aligned_cols=139 Identities=18% Similarity=0.166 Sum_probs=74.2
Q ss_pred ccEEEEEcCCCCChHHHHHhhhcC------Cc--c--c-c-----------cCccceeEEEE-----------------E
Q 030233 17 RIKLLMVGLDASGKTTILYKMKLG------EI--V--T-T-----------TPTIGFNVEAV-----------------E 57 (181)
Q Consensus 17 ~~~i~~~G~~~~GKssl~~~~~~~------~~--~--~-~-----------~~~~~~~~~~~-----------------~ 57 (181)
...|+++|++|+||||++..++.. .. . + + ....+...... .
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~~ 219 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHAK 219 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHHH
Confidence 567999999999999987777531 10 0 0 0 00111111100 1
Q ss_pred ECCeEEEEEEcCCChhhHH----HHHhhc--cCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCC
Q 030233 58 YKNKSFCVWDVGGQNKIRA----LWRHYF--RDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLP 131 (181)
Q Consensus 58 ~~~~~~~i~d~~g~~~~~~----~~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~ 131 (181)
..+..+.++||+|...... ...... ...|.+++|+|+............+... -.+--+++||.|..
T Consensus 220 ~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~~~-------~~~~giIlTKlD~~ 292 (336)
T PRK14974 220 ARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFNEA-------VGIDGVILTKVDAD 292 (336)
T ss_pred hCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHHHhc-------CCCCEEEEeeecCC
Confidence 1345799999999653221 111221 2478899999996432221112222221 12346889999985
Q ss_pred CCCCHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHHH
Q 030233 132 NVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLD 171 (181)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 171 (181)
.... ..+.-.. ..+.|+..++ +|++++++..
T Consensus 293 ~~~G-~~ls~~~------~~~~Pi~~i~--~Gq~v~Dl~~ 323 (336)
T PRK14974 293 AKGG-AALSIAY------VIGKPILFLG--VGQGYDDLIP 323 (336)
T ss_pred CCcc-HHHHHHH------HHCcCEEEEe--CCCChhhccc
Confidence 4222 2222211 1234677776 8999987653
No 381
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.40 E-value=2.9e-05 Score=50.86 Aligned_cols=144 Identities=15% Similarity=0.162 Sum_probs=73.6
Q ss_pred CccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEE--CCeEEEEEEcC-C---------------------C
Q 030233 16 CRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEY--KNKSFCVWDVG-G---------------------Q 71 (181)
Q Consensus 16 ~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~d~~-g---------------------~ 71 (181)
..++|.+.|+||+||||++.++...--.....--|+-...+.- ...-|.+.|.. | -
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~V~v 83 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYGVNV 83 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEEeeH
Confidence 4689999999999999999988642111100000111111111 12234444444 1 0
Q ss_pred hhhHH----HHHhhccCCCEEEEEEECCCcccH--HHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCc
Q 030233 72 NKIRA----LWRHYFRDTLGLTFVVDSSDRERI--SEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLEL 145 (181)
Q Consensus 72 ~~~~~----~~~~~~~~~d~ii~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~ 145 (181)
+.+.. ....+++.+|++| +|=-.+--+ ....+.++.++. .+.|+|.++.+.+.. +-.+++++..
T Consensus 84 ~~le~i~~~al~rA~~~aDvII--IDEIGpMElks~~f~~~ve~vl~----~~kpliatlHrrsr~--P~v~~ik~~~-- 153 (179)
T COG1618 84 EGLEEIAIPALRRALEEADVII--IDEIGPMELKSKKFREAVEEVLK----SGKPLIATLHRRSRH--PLVQRIKKLG-- 153 (179)
T ss_pred HHHHHHhHHHHHHHhhcCCEEE--EecccchhhccHHHHHHHHHHhc----CCCcEEEEEecccCC--hHHHHhhhcC--
Confidence 11121 2344555667665 454333212 234444555544 478888888877641 2223333321
Q ss_pred cccCCccEEEEEeeccCCCCHHHHHHHHHhhhhc
Q 030233 146 YSLGQRRWSIQSCSAISGQGLYEGLDWLSNNISV 179 (181)
Q Consensus 146 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 179 (181)
. .++. .+.+|-+.+++.+...+..
T Consensus 154 ------~-v~v~---lt~~NR~~i~~~Il~~L~~ 177 (179)
T COG1618 154 ------G-VYVF---LTPENRNRILNEILSVLKG 177 (179)
T ss_pred ------C-EEEE---EccchhhHHHHHHHHHhcc
Confidence 1 1232 5667777888888877654
No 382
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.38 E-value=5e-06 Score=61.29 Aligned_cols=138 Identities=16% Similarity=0.140 Sum_probs=74.1
Q ss_pred ccEEEEEcCCCCChHHHHHhhhcCCccc--------cc--------------CccceeEEEE-----------------E
Q 030233 17 RIKLLMVGLDASGKTTILYKMKLGEIVT--------TT--------------PTIGFNVEAV-----------------E 57 (181)
Q Consensus 17 ~~~i~~~G~~~~GKssl~~~~~~~~~~~--------~~--------------~~~~~~~~~~-----------------~ 57 (181)
.-.++++|++|+||||++..+++.-... .. ...+...... .
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~~ 193 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAAK 193 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHHH
Confidence 4578999999999999998886521000 00 0011111100 0
Q ss_pred ECCeEEEEEEcCCChhhH-----HHH--Hhh-----ccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEE
Q 030233 58 YKNKSFCVWDVGGQNKIR-----ALW--RHY-----FRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFA 125 (181)
Q Consensus 58 ~~~~~~~i~d~~g~~~~~-----~~~--~~~-----~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~ 125 (181)
..+..+.++||||..... .+. ... -...+..++|+|++.. ...+.. .....+. -.+.-+++
T Consensus 194 ~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g--~~~~~~-a~~f~~~----~~~~giIl 266 (318)
T PRK10416 194 ARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTG--QNALSQ-AKAFHEA----VGLTGIIL 266 (318)
T ss_pred hCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCC--hHHHHH-HHHHHhh----CCCCEEEE
Confidence 145689999999954311 111 111 1246789999999743 222222 2222111 13447899
Q ss_pred eCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHH
Q 030233 126 NKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGL 170 (181)
Q Consensus 126 nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 170 (181)
||.|.... .-.+.... ...+.|+..++ +|++++++-
T Consensus 267 TKlD~t~~--~G~~l~~~-----~~~~~Pi~~v~--~Gq~~~Dl~ 302 (318)
T PRK10416 267 TKLDGTAK--GGVVFAIA-----DELGIPIKFIG--VGEGIDDLQ 302 (318)
T ss_pred ECCCCCCC--ccHHHHHH-----HHHCCCEEEEe--CCCChhhCc
Confidence 99996432 11222211 11244677777 888887663
No 383
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=98.37 E-value=3.4e-05 Score=59.83 Aligned_cols=96 Identities=10% Similarity=0.204 Sum_probs=66.4
Q ss_pred eEEEEEEcCCC-------------hhhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeC
Q 030233 61 KSFCVWDVGGQ-------------NKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANK 127 (181)
Q Consensus 61 ~~~~i~d~~g~-------------~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK 127 (181)
..+.+.|.||- +...++...+..+..++|+|+-- -|.+..+.....++..-++.+...|+|++|
T Consensus 412 qRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQD---GSVDAERSnVTDLVsq~DP~GrRTIfVLTK 488 (980)
T KOG0447|consen 412 QRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQD---GSVDAERSIVTDLVSQMDPHGRRTIFVLTK 488 (980)
T ss_pred ceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEecc---CCcchhhhhHHHHHHhcCCCCCeeEEEEee
Confidence 46889999992 22334566777889999999842 245566667777777777778999999999
Q ss_pred CCCCCC--CCHHHHHhhhCccccCCccEEEEEee
Q 030233 128 QDLPNV--MPTAEVADKLELYSLGQRRWSIQSCS 159 (181)
Q Consensus 128 ~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (181)
.|+.+. .++..+.+.++-..+--+...||-+-
T Consensus 489 VDlAEknlA~PdRI~kIleGKLFPMKALGYfaVV 522 (980)
T KOG0447|consen 489 VDLAEKNVASPSRIQQIIEGKLFPMKALGYFAVV 522 (980)
T ss_pred cchhhhccCCHHHHHHHHhcCccchhhcceeEEE
Confidence 998654 56677777775443333334466554
No 384
>PRK01889 GTPase RsgA; Reviewed
Probab=98.36 E-value=4.5e-06 Score=62.60 Aligned_cols=84 Identities=20% Similarity=0.204 Sum_probs=55.5
Q ss_pred ccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeecc
Q 030233 82 FRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAI 161 (181)
Q Consensus 82 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (181)
..++|.+++|+++..+-....+..++..+ .. .+++.++|+||+|+.+.. .+........ ..+.+++.+|++
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a-~~---~~i~piIVLNK~DL~~~~-~~~~~~~~~~----~~g~~Vi~vSa~ 180 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALA-WE---SGAEPVIVLTKADLCEDA-EEKIAEVEAL----APGVPVLAVSAL 180 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHH-HH---cCCCEEEEEEChhcCCCH-HHHHHHHHHh----CCCCcEEEEECC
Confidence 46789999999996433333344444333 22 467789999999997531 1112222111 235579999999
Q ss_pred CCCCHHHHHHHHH
Q 030233 162 SGQGLYEGLDWLS 174 (181)
Q Consensus 162 ~~~~i~~l~~~i~ 174 (181)
+|.|++++..++.
T Consensus 181 ~g~gl~~L~~~L~ 193 (356)
T PRK01889 181 DGEGLDVLAAWLS 193 (356)
T ss_pred CCccHHHHHHHhh
Confidence 9999999998885
No 385
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=98.30 E-value=1.2e-07 Score=70.61 Aligned_cols=121 Identities=17% Similarity=0.139 Sum_probs=83.4
Q ss_pred EEEEEcCCCCChHHHHHhhhcCC--------cc-------------cccCccceeEEEEEECCeEEEEEEcCCChhhHHH
Q 030233 19 KLLMVGLDASGKTTILYKMKLGE--------IV-------------TTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRAL 77 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~~~--------~~-------------~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~ 77 (181)
+|+++.+-.+||||.-.|++.-. .. +...|+......+.+.+.++.++||||+.+|+-.
T Consensus 39 nigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf~le 118 (753)
T KOG0464|consen 39 NIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDFRLE 118 (753)
T ss_pred cceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceEEEE
Confidence 68999999999999998886411 00 1122333334456779999999999999999988
Q ss_pred HHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC---CCHHHHHhhhC
Q 030233 78 WRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV---MPTAEVADKLE 144 (181)
Q Consensus 78 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~---~~~~~~~~~~~ 144 (181)
.+..++-.|+++.|||++-.-.-+.+ ..|. ....-++|-+.++||+|.... ...+.+.+.+.
T Consensus 119 verclrvldgavav~dasagve~qtl-tvwr----qadk~~ip~~~finkmdk~~anfe~avdsi~ekl~ 183 (753)
T KOG0464|consen 119 VERCLRVLDGAVAVFDASAGVEAQTL-TVWR----QADKFKIPAHCFINKMDKLAANFENAVDSIEEKLG 183 (753)
T ss_pred HHHHHHHhcCeEEEEeccCCccccee-eeeh----hccccCCchhhhhhhhhhhhhhhhhHHHHHHHHhC
Confidence 89999999999999999743211222 1222 223357999999999998642 23344444443
No 386
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=98.30 E-value=8.4e-07 Score=67.59 Aligned_cols=54 Identities=20% Similarity=0.305 Sum_probs=45.2
Q ss_pred ccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEE-ECCeEEEEEEcCC
Q 030233 17 RIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVE-YKNKSFCVWDVGG 70 (181)
Q Consensus 17 ~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~d~~g 70 (181)
.+.|+++|-|+|||||+||.++|++-...+.|+|-+..-.+ .-.-.+.+.|.||
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~ls~~v~LCDCPG 368 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFLSPSVCLCDCPG 368 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEcCCCceecCCCC
Confidence 48899999999999999999999999999999996544332 3555788999999
No 387
>PRK00098 GTPase RsgA; Reviewed
Probab=98.29 E-value=2.8e-06 Score=62.25 Aligned_cols=54 Identities=17% Similarity=0.135 Sum_probs=34.5
Q ss_pred cEEEEEcCCCCChHHHHHhhhcCCcccccCccc-------eeE--EEEEECCeEEEEEEcCCCh
Q 030233 18 IKLLMVGLDASGKTTILYKMKLGEIVTTTPTIG-------FNV--EAVEYKNKSFCVWDVGGQN 72 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~-------~~~--~~~~~~~~~~~i~d~~g~~ 72 (181)
..++++|.+|+|||||+|++++........... ++. ..+.... ...++||||-.
T Consensus 165 k~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~-~~~~~DtpG~~ 227 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPG-GGLLIDTPGFS 227 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCC-CcEEEECCCcC
Confidence 468999999999999999999866433222111 121 1122222 34789999943
No 388
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.28 E-value=3.5e-05 Score=55.71 Aligned_cols=96 Identities=9% Similarity=0.047 Sum_probs=52.5
Q ss_pred CCeEEEEEEcCCChhhHHHH----H---hhc-----cCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEe
Q 030233 59 KNKSFCVWDVGGQNKIRALW----R---HYF-----RDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFAN 126 (181)
Q Consensus 59 ~~~~~~i~d~~g~~~~~~~~----~---~~~-----~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~n 126 (181)
.+..+.++||||........ . ... ..+|.+++|+|++.. -+... ....+.+.. .+--+++|
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~--~~~~~-~~~~f~~~~----~~~g~IlT 225 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTG--QNALE-QAKVFNEAV----GLTGIILT 225 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCC--HHHHH-HHHHHHhhC----CCCEEEEE
Confidence 45789999999965432221 1 111 137899999999632 22222 223322211 23578899
Q ss_pred CCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHH
Q 030233 127 KQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGL 170 (181)
Q Consensus 127 K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 170 (181)
|.|...... ..+.-.. ..+.|+..++ +|++++++-
T Consensus 226 KlDe~~~~G-~~l~~~~------~~~~Pi~~~~--~Gq~~~dl~ 260 (272)
T TIGR00064 226 KLDGTAKGG-IILSIAY------ELKLPIKFIG--VGEKIDDLA 260 (272)
T ss_pred ccCCCCCcc-HHHHHHH------HHCcCEEEEe--CCCChHhCc
Confidence 999754222 1111111 1234677777 888887664
No 389
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.26 E-value=2.7e-06 Score=61.97 Aligned_cols=55 Identities=15% Similarity=0.106 Sum_probs=34.9
Q ss_pred cEEEEEcCCCCChHHHHHhhhcCCcccccCc-------cceeEEE--EEECCeEEEEEEcCCChh
Q 030233 18 IKLLMVGLDASGKTTILYKMKLGEIVTTTPT-------IGFNVEA--VEYKNKSFCVWDVGGQNK 73 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~-------~~~~~~~--~~~~~~~~~i~d~~g~~~ 73 (181)
-.++++|++|+|||||+|.+.+......... ..++... +.... ...++||||...
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~-~~~liDtPG~~~ 225 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPG-GGLLIDTPGFRE 225 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCC-CCEEEECCCCCc
Confidence 5689999999999999999998653322111 1122222 22221 236899999644
No 390
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=98.22 E-value=7.2e-06 Score=60.66 Aligned_cols=149 Identities=19% Similarity=0.171 Sum_probs=85.6
Q ss_pred ccEEEEEcCCCCChHHHHHhhhcCCccc-----------------ccCc-------ccee---------------EEEEE
Q 030233 17 RIKLLMVGLDASGKTTILYKMKLGEIVT-----------------TTPT-------IGFN---------------VEAVE 57 (181)
Q Consensus 17 ~~~i~~~G~~~~GKssl~~~~~~~~~~~-----------------~~~~-------~~~~---------------~~~~~ 57 (181)
+.+++++|...+|||||+-.+..+.... ...| +|++ ...++
T Consensus 133 E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWvk 212 (641)
T KOG0463|consen 133 EARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWVK 212 (641)
T ss_pred eEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCccccee
Confidence 5799999999999999987776543211 0111 1111 11122
Q ss_pred E---CCeEEEEEEcCCChhhHHHHH--hhccCCCEEEEEEECCCcccHHHHH-HHHHHHHcCCCCCCCeEEEEEeCCCCC
Q 030233 58 Y---KNKSFCVWDVGGQNKIRALWR--HYFRDTLGLTFVVDSSDRERISEAR-NELHQILSDNELSNAALLVFANKQDLP 131 (181)
Q Consensus 58 ~---~~~~~~i~d~~g~~~~~~~~~--~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~nK~D~~ 131 (181)
+ ....++++|.+|+++|..... .--+..|...+++-++-. +-... +-+-..+. -.+|+.+|++|+|.-
T Consensus 213 Ice~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaG--IiGmTKEHLgLALa----L~VPVfvVVTKIDMC 286 (641)
T KOG0463|consen 213 ICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAG--IIGMTKEHLGLALA----LHVPVFVVVTKIDMC 286 (641)
T ss_pred eccccceeEEEEeccchhhhhheeeeccccCCCCceEEEeccccc--ceeccHHhhhhhhh----hcCcEEEEEEeeccC
Confidence 2 234688999999999876432 222345777777765421 21111 11111122 368999999999976
Q ss_pred CCCCHHHHHhhh----Cc---------------------cccCCccEEEEEeeccCCCCHHHHHH
Q 030233 132 NVMPTAEVADKL----EL---------------------YSLGQRRWSIQSCSAISGQGLYEGLD 171 (181)
Q Consensus 132 ~~~~~~~~~~~~----~~---------------------~~~~~~~~~~~~~Sa~~~~~i~~l~~ 171 (181)
+....++-.+.+ .. .+...+-+++|.+|-.+|+|++.+.-
T Consensus 287 PANiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLkm 351 (641)
T KOG0463|consen 287 PANILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLKM 351 (641)
T ss_pred cHHHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHHH
Confidence 543333322211 11 01123566899999999999976544
No 391
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=98.21 E-value=2.1e-05 Score=51.62 Aligned_cols=58 Identities=12% Similarity=0.019 Sum_probs=36.6
Q ss_pred CeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCC
Q 030233 60 NKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQD 129 (181)
Q Consensus 60 ~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D 129 (181)
+..+.++||+|..... ..++..+|-++++.... -.+.........+... =++++||.|
T Consensus 91 ~~D~iiIDtaG~~~~~---~~~~~~Ad~~ivv~tpe---~~D~y~~~k~~~~~~~------~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVGQSE---VDIASMADTTVVVMAPG---AGDDIQAIKAGIMEIA------DIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccChhh---hhHHHhCCEEEEEECCC---chhHHHHhhhhHhhhc------CEEEEeCCC
Confidence 5689999999854322 34777899999988765 2333332222333332 288999987
No 392
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.18 E-value=4.1e-05 Score=58.42 Aligned_cols=109 Identities=19% Similarity=0.137 Sum_probs=60.7
Q ss_pred ccEEEEEcCCCCChHHHHHhhhc------CC-----ccccc-----------CccceeEEEEEE----------------
Q 030233 17 RIKLLMVGLDASGKTTILYKMKL------GE-----IVTTT-----------PTIGFNVEAVEY---------------- 58 (181)
Q Consensus 17 ~~~i~~~G~~~~GKssl~~~~~~------~~-----~~~~~-----------~~~~~~~~~~~~---------------- 58 (181)
+-.|+++|.+|+||||++..++. .. ...+. ...++.......
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~ 179 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFK 179 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHH
Confidence 45689999999999999998862 22 00100 011111111100
Q ss_pred -CCeEEEEEEcCCChhhHHH----HHhh--ccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCC
Q 030233 59 -KNKSFCVWDVGGQNKIRAL----WRHY--FRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLP 131 (181)
Q Consensus 59 -~~~~~~i~d~~g~~~~~~~----~~~~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~ 131 (181)
.+..+.++||||....... .... ...++-+++|+|++-...-......|.. . -.+--+++||.|..
T Consensus 180 ~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F~~---~----~~~~g~IlTKlD~~ 252 (429)
T TIGR01425 180 KENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAFKD---S----VDVGSVIITKLDGH 252 (429)
T ss_pred hCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHHHHHh---c----cCCcEEEEECccCC
Confidence 2578999999995433211 1111 2246889999998643222222222221 1 23557889999975
Q ss_pred C
Q 030233 132 N 132 (181)
Q Consensus 132 ~ 132 (181)
.
T Consensus 253 a 253 (429)
T TIGR01425 253 A 253 (429)
T ss_pred C
Confidence 4
No 393
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.15 E-value=2.1e-05 Score=59.07 Aligned_cols=116 Identities=16% Similarity=0.173 Sum_probs=63.0
Q ss_pred ccEEEEEcCCCCChHHHHHhhhcCCccc----c-----cC---------------ccceeEEEEE-----------ECCe
Q 030233 17 RIKLLMVGLDASGKTTILYKMKLGEIVT----T-----TP---------------TIGFNVEAVE-----------YKNK 61 (181)
Q Consensus 17 ~~~i~~~G~~~~GKssl~~~~~~~~~~~----~-----~~---------------~~~~~~~~~~-----------~~~~ 61 (181)
.-.++++|++|+||||++..++...... . .. ..++...... +.+.
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~ 216 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNK 216 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCC
Confidence 4478999999999999999997532110 0 00 0111111111 1456
Q ss_pred EEEEEEcCCChhhHHH---HHhhc---cCCCEEEEEEECCC-cccHHHHHHHHHHHHcCCCCCC-CeEEEEEeCCCCCC
Q 030233 62 SFCVWDVGGQNKIRAL---WRHYF---RDTLGLTFVVDSSD-RERISEARNELHQILSDNELSN-AALLVFANKQDLPN 132 (181)
Q Consensus 62 ~~~i~d~~g~~~~~~~---~~~~~---~~~d~ii~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~-~piilv~nK~D~~~ 132 (181)
.+.++||+|....... ....+ ....-.++|++++. .+.+......|..........- .+-=++++|.|...
T Consensus 217 DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt~ 295 (374)
T PRK14722 217 HMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEAS 295 (374)
T ss_pred CEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccCC
Confidence 8999999996533221 11122 23455688999864 3444544444444422210000 12346779999754
No 394
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.11 E-value=1.1e-05 Score=55.36 Aligned_cols=106 Identities=14% Similarity=0.150 Sum_probs=57.6
Q ss_pred EEEEEcCCCCChHHHHHhhhcCCccc----------------------ccCccceeEEEEE-----------------EC
Q 030233 19 KLLMVGLDASGKTTILYKMKLGEIVT----------------------TTPTIGFNVEAVE-----------------YK 59 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~~~~~~----------------------~~~~~~~~~~~~~-----------------~~ 59 (181)
.++++|++|+||||.+-+++...... +....++...... .+
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~~~ 82 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFRKK 82 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHhhc
Confidence 58999999999999998886421000 0111222221110 13
Q ss_pred CeEEEEEEcCCChhhHHH----HHhhc--cCCCEEEEEEECCCcc-cHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 030233 60 NKSFCVWDVGGQNKIRAL----WRHYF--RDTLGLTFVVDSSDRE-RISEARNELHQILSDNELSNAALLVFANKQDLPN 132 (181)
Q Consensus 60 ~~~~~i~d~~g~~~~~~~----~~~~~--~~~d~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~ 132 (181)
+..+.++||+|....... ...++ ...+-+++|+|++... .+......+..+ + +-=++++|.|...
T Consensus 83 ~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~~~~-------~-~~~lIlTKlDet~ 154 (196)
T PF00448_consen 83 GYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAFYEAF-------G-IDGLILTKLDETA 154 (196)
T ss_dssp TSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHHHHS-------S-TCEEEEESTTSSS
T ss_pred CCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHHhhcc-------c-CceEEEEeecCCC
Confidence 467999999995443221 11111 1578899999997442 223222222221 1 1246699999754
No 395
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.07 E-value=6.2e-06 Score=59.50 Aligned_cols=23 Identities=17% Similarity=0.297 Sum_probs=20.7
Q ss_pred EEEEEcCCCCChHHHHHhhhcCC
Q 030233 19 KLLMVGLDASGKTTILYKMKLGE 41 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~~~ 41 (181)
..+++|.+|+|||||+|++....
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~ 188 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPEL 188 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchh
Confidence 57899999999999999998744
No 396
>PRK13695 putative NTPase; Provisional
Probab=98.06 E-value=0.00026 Score=47.78 Aligned_cols=22 Identities=32% Similarity=0.480 Sum_probs=19.5
Q ss_pred cEEEEEcCCCCChHHHHHhhhc
Q 030233 18 IKLLMVGLDASGKTTILYKMKL 39 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~ 39 (181)
+++++.|++|+|||||+..+.+
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~ 22 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAE 22 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998654
No 397
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=98.06 E-value=5.5e-06 Score=59.65 Aligned_cols=56 Identities=14% Similarity=0.280 Sum_probs=41.7
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhcCC-----cccccCccceeEEEEE---E-CCeEEEEEEcCC
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKLGE-----IVTTTPTIGFNVEAVE---Y-KNKSFCVWDVGG 70 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~~~-----~~~~~~~~~~~~~~~~---~-~~~~~~i~d~~g 70 (181)
..+++++|+|.||+|||||+|.+.... .....+-+|++...-. + +.-.+.+.||||
T Consensus 141 ~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp~vy~iDTPG 205 (335)
T KOG2485|consen 141 NSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRPPVYLIDTPG 205 (335)
T ss_pred CCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCCceEEecCCC
Confidence 357899999999999999999886543 3344555666655432 2 556789999999
No 398
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.04 E-value=3e-05 Score=56.03 Aligned_cols=88 Identities=19% Similarity=0.168 Sum_probs=59.3
Q ss_pred CCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCC
Q 030233 84 DTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISG 163 (181)
Q Consensus 84 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (181)
+.|-.++|+.+.+|+-=....+.+.-+... .++..++++||+|+.++..... .... ..+...+.+++.+|++++
T Consensus 79 n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~---~gi~pvIvlnK~DL~~~~~~~~-~~~~--~~y~~~gy~v~~~s~~~~ 152 (301)
T COG1162 79 NNDQAIIVVSLVDPDFNTNLLDRYLVLAEA---GGIEPVIVLNKIDLLDDEEAAV-KELL--REYEDIGYPVLFVSAKNG 152 (301)
T ss_pred ccceEEEEEeccCCCCCHHHHHHHHHHHHH---cCCcEEEEEEccccCcchHHHH-HHHH--HHHHhCCeeEEEecCcCc
Confidence 367777777777765323333333333333 5777888899999988655553 1211 122456778999999999
Q ss_pred CCHHHHHHHHHhhh
Q 030233 164 QGLYEGLDWLSNNI 177 (181)
Q Consensus 164 ~~i~~l~~~i~~~~ 177 (181)
++++++.+.+..++
T Consensus 153 ~~~~~l~~~l~~~~ 166 (301)
T COG1162 153 DGLEELAELLAGKI 166 (301)
T ss_pred ccHHHHHHHhcCCe
Confidence 99999999887653
No 399
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=98.02 E-value=9.6e-05 Score=49.77 Aligned_cols=66 Identities=18% Similarity=0.100 Sum_probs=38.2
Q ss_pred CeEEEEEEcCCChhhH----HHHHhhc--cCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 030233 60 NKSFCVWDVGGQNKIR----ALWRHYF--RDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPN 132 (181)
Q Consensus 60 ~~~~~i~d~~g~~~~~----~~~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~ 132 (181)
+..+.+.|++|..... ....... ...+.+++|+|...... .......+.+.. + ..-++.||.|...
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~---~~~~~~~~~~~~---~-~~~viltk~D~~~ 153 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQD---AVNQAKAFNEAL---G-ITGVILTKLDGDA 153 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChH---HHHHHHHHHhhC---C-CCEEEEECCcCCC
Confidence 4568999999964322 1111111 24899999999864432 223344433321 2 3457779999754
No 400
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=98.01 E-value=0.00012 Score=54.15 Aligned_cols=75 Identities=12% Similarity=0.165 Sum_probs=42.0
Q ss_pred eEEEEEEcCCChhhHHHHHhhcc--------CCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 030233 61 KSFCVWDVGGQNKIRALWRHYFR--------DTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPN 132 (181)
Q Consensus 61 ~~~~i~d~~g~~~~~~~~~~~~~--------~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~ 132 (181)
....++++.|..+-..+...++. ..+.++.|+|+.+-.........+...+...+ ++++||+|+..
T Consensus 91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~AD------~IvlnK~Dl~~ 164 (318)
T PRK11537 91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYAD------RILLTKTDVAG 164 (318)
T ss_pred CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHhCC------EEEEeccccCC
Confidence 45688999996654444444322 24789999999643211111112222233322 89999999876
Q ss_pred CCCHHHHHhhh
Q 030233 133 VMPTAEVADKL 143 (181)
Q Consensus 133 ~~~~~~~~~~~ 143 (181)
+ .+.+...+
T Consensus 165 ~--~~~~~~~l 173 (318)
T PRK11537 165 E--AEKLRERL 173 (318)
T ss_pred H--HHHHHHHH
Confidence 3 23444444
No 401
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=98.01 E-value=8e-05 Score=44.74 Aligned_cols=97 Identities=15% Similarity=0.083 Sum_probs=55.7
Q ss_pred EEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEECCeEEEEEEcCCChhhHHH-HHhhccCCCEEEEEEECCCcc
Q 030233 20 LLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRAL-WRHYFRDTLGLTFVVDSSDRE 98 (181)
Q Consensus 20 i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~-~~~~~~~~d~ii~v~d~~~~~ 98 (181)
+++.|..|+||||+...++..-.. .+.....+. .+.++|+++....... .......+|.++++++... .
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~-----~g~~v~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~~~-~ 71 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAK-----RGKRVLLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTPEA-L 71 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-----CCCeEEEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecCCch-h
Confidence 578899999999999888643211 111111111 7899999985443321 1345567899999998763 3
Q ss_pred cHHHHHHHHHHHHcCCCCCCCeEEEEEe
Q 030233 99 RISEARNELHQILSDNELSNAALLVFAN 126 (181)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~piilv~n 126 (181)
++...................+..++.|
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~vv~N 99 (99)
T cd01983 72 AVLGARRLTEVVLELAIEGLRPVGVVVN 99 (99)
T ss_pred hHHHHHHHHHHHHHhhccCCceEEEEeC
Confidence 4444444332222222223455555544
No 402
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=98.01 E-value=7.2e-05 Score=56.19 Aligned_cols=108 Identities=16% Similarity=0.248 Sum_probs=61.6
Q ss_pred ccEEEEEcCCCCChHHHHHhhhcCCc-ccccC-----------------------ccceeEEEEE-----------ECCe
Q 030233 17 RIKLLMVGLDASGKTTILYKMKLGEI-VTTTP-----------------------TIGFNVEAVE-----------YKNK 61 (181)
Q Consensus 17 ~~~i~~~G~~~~GKssl~~~~~~~~~-~~~~~-----------------------~~~~~~~~~~-----------~~~~ 61 (181)
.=.|+++|+.|+||||-+-.++.... ..... .++.....+. +.+.
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~ 282 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC 282 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence 44689999999999999887765432 11111 1111111111 1567
Q ss_pred EEEEEEcCCChhhHHH----HHhhccC--CCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeE-EEEEeCCCCCC
Q 030233 62 SFCVWDVGGQNKIRAL----WRHYFRD--TLGLTFVVDSSDRERISEARNELHQILSDNELSNAAL-LVFANKQDLPN 132 (181)
Q Consensus 62 ~~~i~d~~g~~~~~~~----~~~~~~~--~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pi-ilv~nK~D~~~ 132 (181)
.+.++||.|...+... ...++.. ..-+.+|++++-. ...+.+.+..+. ..|+ =++++|.|...
T Consensus 283 d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K--~~dlkei~~~f~------~~~i~~~I~TKlDET~ 352 (407)
T COG1419 283 DVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK--YEDLKEIIKQFS------LFPIDGLIFTKLDETT 352 (407)
T ss_pred CEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc--hHHHHHHHHHhc------cCCcceeEEEcccccC
Confidence 8999999996554432 3333332 3446677887633 334444444442 2232 36789999644
No 403
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=98.00 E-value=3.7e-06 Score=62.45 Aligned_cols=67 Identities=19% Similarity=0.253 Sum_probs=48.3
Q ss_pred hHHHHhhhhCCCCccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEE-CCeEEEEEEcCC
Q 030233 4 LISRLAKRFFPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEY-KNKSFCVWDVGG 70 (181)
Q Consensus 4 ~~~~~~~~~~~~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~d~~g 70 (181)
+++.+.+-....+.+.|+++|-|++||||+||.+-....=...|..|.+.....+ -...+.++|.||
T Consensus 294 llRQf~kLh~dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETKVWQYItLmkrIfLIDcPG 361 (572)
T KOG2423|consen 294 LLRQFAKLHSDKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETKVWQYITLMKRIFLIDCPG 361 (572)
T ss_pred HHHHHHhhccCccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcchHHHHHHHHhceeEecCCC
Confidence 4555555566788999999999999999999999877755556666644322111 234677899999
No 404
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.00 E-value=2.6e-05 Score=65.85 Aligned_cols=109 Identities=20% Similarity=0.283 Sum_probs=64.3
Q ss_pred EEEEcCCCCChHHHHHhhhcCCcccc-------cCccceeEEEEEE-CCeEEEEEEcCCC--------hhhHHHHHhhc-
Q 030233 20 LLMVGLDASGKTTILYKMKLGEIVTT-------TPTIGFNVEAVEY-KNKSFCVWDVGGQ--------NKIRALWRHYF- 82 (181)
Q Consensus 20 i~~~G~~~~GKssl~~~~~~~~~~~~-------~~~~~~~~~~~~~-~~~~~~i~d~~g~--------~~~~~~~~~~~- 82 (181)
-+|+|++|+||||++..-- -.|+-. ....+ +..+++ -...-.++||+|. +.....|..++
T Consensus 128 y~viG~pgsGKTtal~~sg-l~Fpl~~~~~~~~~~~~g--T~~cdwwf~deaVlIDtaGry~~q~s~~~~~~~~W~~fL~ 204 (1188)
T COG3523 128 YMVIGPPGSGKTTALLNSG-LQFPLAEQMGALGLAGPG--TRNCDWWFTDEAVLIDTAGRYITQDSADEVDRAEWLGFLG 204 (1188)
T ss_pred eEEecCCCCCcchHHhccc-ccCcchhhhccccccCCC--CcccCcccccceEEEcCCcceecccCcchhhHHHHHHHHH
Confidence 5899999999999985432 222211 11122 122222 3345568899882 23344455442
Q ss_pred --------cCCCEEEEEEECCCccc---------HHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 030233 83 --------RDTLGLTFVVDSSDRER---------ISEARNELHQILSDNELSNAALLVFANKQDLPN 132 (181)
Q Consensus 83 --------~~~d~ii~v~d~~~~~s---------~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~ 132 (181)
+..+++|+.+|+.+--+ ...++..+.++.+. -....|+.+++||.|+..
T Consensus 205 lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~t-L~~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 205 LLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRET-LHARLPVYLVLTKADLLP 270 (1188)
T ss_pred HHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHh-hccCCceEEEEecccccc
Confidence 46799999999864211 12233444444332 225799999999999865
No 405
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=97.99 E-value=1.3e-05 Score=54.27 Aligned_cols=119 Identities=17% Similarity=0.176 Sum_probs=66.3
Q ss_pred EEEEEcCCCCChHHHHHhhhc-C---C--------cccc------cCccceeEEEEEE---------------------C
Q 030233 19 KLLMVGLDASGKTTILYKMKL-G---E--------IVTT------TPTIGFNVEAVEY---------------------K 59 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~-~---~--------~~~~------~~~~~~~~~~~~~---------------------~ 59 (181)
-+++.|--|||||||+++++. . . +... ....+.....+.. .
T Consensus 2 v~ii~GfLGsGKTTli~~ll~~~~~~~~~~vI~ne~g~~~iD~~~l~~~~~~v~~l~~gcicc~~~~~~~~~l~~l~~~~ 81 (178)
T PF02492_consen 2 VIIITGFLGSGKTTLINHLLKRNRQGERVAVIVNEFGEVNIDAELLQEDGVPVVELNNGCICCTLRDDLVEALRRLLREY 81 (178)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTTS-EEEEECSTTSTHHHHHHHHTTT-EEEEECTTTESS-TTS-HHHHHHHHCCCC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhcCCceeEEEEccccccccchhhhcccceEEEEecCCCcccccHHHHHHHHHHHHHhc
Confidence 368899999999999999993 1 1 1110 0011122221110 2
Q ss_pred --CeEEEEEEcCCChhhHHH--HHh---hccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 030233 60 --NKSFCVWDVGGQNKIRAL--WRH---YFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPN 132 (181)
Q Consensus 60 --~~~~~i~d~~g~~~~~~~--~~~---~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~ 132 (181)
.....++++.|...-... ... ..-..+.++.|+|+.+-.........+...++..+ ++++||+|+.+
T Consensus 82 ~~~~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~AD------vIvlnK~D~~~ 155 (178)
T PF02492_consen 82 EERPDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAFAD------VIVLNKIDLVS 155 (178)
T ss_dssp HGC-SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT-S------EEEEE-GGGHH
T ss_pred CCCcCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcchhcC------EEEEeccccCC
Confidence 357788899984332222 111 11246899999999764444445556666666543 89999999876
Q ss_pred CC-CHHHHHhhh
Q 030233 133 VM-PTAEVADKL 143 (181)
Q Consensus 133 ~~-~~~~~~~~~ 143 (181)
.. ..+.+.+..
T Consensus 156 ~~~~i~~~~~~i 167 (178)
T PF02492_consen 156 DEQKIERVREMI 167 (178)
T ss_dssp HH--HHHHHHHH
T ss_pred hhhHHHHHHHHH
Confidence 44 224444433
No 406
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=97.98 E-value=4.9e-05 Score=52.01 Aligned_cols=115 Identities=13% Similarity=0.148 Sum_probs=63.6
Q ss_pred CeEEEEEEcCCChhhH-------HHHHhhc--cCCCEEEEEEECCC-cccHHHHHHHH---HHHHcCCCCCCCeEEEEEe
Q 030233 60 NKSFCVWDVGGQNKIR-------ALWRHYF--RDTLGLTFVVDSSD-RERISEARNEL---HQILSDNELSNAALLVFAN 126 (181)
Q Consensus 60 ~~~~~i~d~~g~~~~~-------~~~~~~~--~~~d~ii~v~d~~~-~~s~~~~~~~~---~~~~~~~~~~~~piilv~n 126 (181)
+-.+.++|.||+-+.. .+....- .---+++|++|..= -++...+...+ ...+. -.+|-|=|++
T Consensus 97 eddylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi~----lE~P~INvls 172 (273)
T KOG1534|consen 97 EDDYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMIS----LEVPHINVLS 172 (273)
T ss_pred cCCEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHHH----hcCcchhhhh
Confidence 3568999999965422 2221111 11245777777631 12222222222 22222 3689999999
Q ss_pred CCCCCCCCCHHHHHhhhCcccc---------------------------CCccEEEEEeeccCCCCHHHHHHHHHhhhh
Q 030233 127 KQDLPNVMPTAEVADKLELYSL---------------------------GQRRWSIQSCSAISGQGLYEGLDWLSNNIS 178 (181)
Q Consensus 127 K~D~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~ 178 (181)
|+|+......+++.+.+.-... ...-+.|.+....+.++++.++..|...++
T Consensus 173 KMDLlk~~~k~~l~~Fl~~d~~~l~~~~~~~~~s~Kf~~L~~~i~~~v~d~~Mv~FlPl~~~~eeSi~~iL~~ID~aiQ 251 (273)
T KOG1534|consen 173 KMDLLKDKNKKELERFLNPDEYLLLEDSEINLRSPKFKKLTKCIAQLVDDYSMVNFLPLDSSDEESINIILSYIDDAIQ 251 (273)
T ss_pred HHHHhhhhhHHHHHHhcCCchhhhhcccccccccHHHHHHHHHHHHHhccccceeeeecCCCCHHHHHHHHHHHHHHHH
Confidence 9999876555555554431100 112445777777777788887777766543
No 407
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.96 E-value=7.8e-05 Score=46.05 Aligned_cols=102 Identities=12% Similarity=0.082 Sum_probs=57.8
Q ss_pred EEE-cCCCCChHHHHHhhhcCCccc-ccCccceeEEEEEECCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCCcc
Q 030233 21 LMV-GLDASGKTTILYKMKLGEIVT-TTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRE 98 (181)
Q Consensus 21 ~~~-G~~~~GKssl~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~ 98 (181)
+++ +..|+||||+...+...-... ...+.-.+.... ....+.++|+|+..... ....+..+|.++++.+.+ ..
T Consensus 3 ~~~~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~--~~~D~IIiDtpp~~~~~--~~~~l~~aD~vlvvv~~~-~~ 77 (106)
T cd03111 3 AFIGAKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQ--FGDDYVVVDLGRSLDEV--SLAALDQADRVFLVTQQD-LP 77 (106)
T ss_pred EEECCCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCC--CCCCEEEEeCCCCcCHH--HHHHHHHcCeEEEEecCC-hH
Confidence 444 467899999877664322111 111110000000 11278999999854432 334667899999999876 55
Q ss_pred cHHHHHHHHHHHHcCCCCCCCeEEEEEeC
Q 030233 99 RISEARNELHQILSDNELSNAALLVFANK 127 (181)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~piilv~nK 127 (181)
++.........+.+........+.+|+|+
T Consensus 78 s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 78 SIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred HHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 66666666665544322114567777775
No 408
>KOG2484 consensus GTPase [General function prediction only]
Probab=97.96 E-value=7.9e-06 Score=60.63 Aligned_cols=56 Identities=18% Similarity=0.295 Sum_probs=44.1
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEE-CCeEEEEEEcCC
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEY-KNKSFCVWDVGG 70 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~d~~g 70 (181)
...++++|+|-|++||||+||++.....=...+++|++..--.. -+..+.+.|.||
T Consensus 250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smqeV~Ldk~i~llDsPg 306 (435)
T KOG2484|consen 250 KTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQEVKLDKKIRLLDSPG 306 (435)
T ss_pred CcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhhhhheeccCCceeccCCc
Confidence 45789999999999999999999988765566666655443222 567889999999
No 409
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=97.94 E-value=4.5e-05 Score=58.58 Aligned_cols=119 Identities=16% Similarity=0.186 Sum_probs=76.3
Q ss_pred HHhhhhCCCCccE-EEEEcCCCCChHHHHHhhhcCC------------cccc---cCccceeEEE--EEE----------
Q 030233 7 RLAKRFFPQCRIK-LLMVGLDASGKTTILYKMKLGE------------IVTT---TPTIGFNVEA--VEY---------- 58 (181)
Q Consensus 7 ~~~~~~~~~~~~~-i~~~G~~~~GKssl~~~~~~~~------------~~~~---~~~~~~~~~~--~~~---------- 58 (181)
++..-+..+++++ +.++.+...|||||-.+++... +.++ ....+++... +..
T Consensus 8 ~vr~lM~k~~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~ 87 (842)
T KOG0469|consen 8 QVRELMDKKKNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLK 87 (842)
T ss_pred HHHHHhccccccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHH
Confidence 3444445555554 8899999999999999997533 1110 0111222211 111
Q ss_pred --------CCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCC
Q 030233 59 --------KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDL 130 (181)
Q Consensus 59 --------~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~ 130 (181)
.+.-+.++|.||+.+|.+....+++-.|+.+.|+|..+.--.+. ...+...+.. ++.-++++||.|.
T Consensus 88 ~~k~~~d~~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQT-ETVLrQA~~E----RIkPvlv~NK~DR 162 (842)
T KOG0469|consen 88 FIKQEGDGNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQT-ETVLRQAIAE----RIKPVLVMNKMDR 162 (842)
T ss_pred HhcCCCCCcceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEech-HHHHHHHHHh----hccceEEeehhhH
Confidence 34678999999999999999999999999999999865321111 1222333332 4566789999995
No 410
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.93 E-value=0.00037 Score=44.94 Aligned_cols=37 Identities=24% Similarity=0.208 Sum_probs=27.1
Q ss_pred HHHHhhhhCCCCccEEEEEcCCCCChHHHHHhhhcCC
Q 030233 5 ISRLAKRFFPQCRIKLLMVGLDASGKTTILYKMKLGE 41 (181)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~G~~~~GKssl~~~~~~~~ 41 (181)
+..+.........-.+++.|++|+|||++++.++..-
T Consensus 7 ~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 7 IEALREALELPPPKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred HHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3444444443345679999999999999999998654
No 411
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=97.91 E-value=0.00035 Score=52.92 Aligned_cols=151 Identities=17% Similarity=0.174 Sum_probs=80.5
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhcCC-----------------cccc--cCccceeEE--------EEEE---CCeEEE
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKLGE-----------------IVTT--TPTIGFNVE--------AVEY---KNKSFC 64 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~~~-----------------~~~~--~~~~~~~~~--------~~~~---~~~~~~ 64 (181)
...+-|+++|+..+|||||+.||...- .|.. ..|+.++.- .+.. ...++.
T Consensus 15 ~GdIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVR 94 (492)
T PF09547_consen 15 GGDIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVR 94 (492)
T ss_pred CCceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEE
Confidence 456889999999999999999997521 1111 112111111 1222 446888
Q ss_pred EEEcCCC--------h-----h------------hHHH----HHhhcc--CCCEEEEEEECC----CcccHHHHHH-HHH
Q 030233 65 VWDVGGQ--------N-----K------------IRAL----WRHYFR--DTLGLTFVVDSS----DRERISEARN-ELH 108 (181)
Q Consensus 65 i~d~~g~--------~-----~------------~~~~----~~~~~~--~~d~ii~v~d~~----~~~s~~~~~~-~~~ 108 (181)
+.|..|. . + |..- +...++ ..-++++.-|.+ .++.+....+ .+.
T Consensus 95 LiDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~ 174 (492)
T PF09547_consen 95 LIDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIE 174 (492)
T ss_pred EEeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHH
Confidence 9998871 0 0 1100 111221 223455555554 1344444433 444
Q ss_pred HHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeecc--CCCCHHHHHHHHH
Q 030233 109 QILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAI--SGQGLYEGLDWLS 174 (181)
Q Consensus 109 ~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~--~~~~i~~l~~~i~ 174 (181)
.+.+. ++|.++++|-.+-. .....+++..+.. ..+++++.+++. +-+.|..+++.+.
T Consensus 175 ELk~i----gKPFvillNs~~P~-s~et~~L~~eL~e----kY~vpVlpvnc~~l~~~DI~~Il~~vL 233 (492)
T PF09547_consen 175 ELKEI----GKPFVILLNSTKPY-SEETQELAEELEE----KYDVPVLPVNCEQLREEDITRILEEVL 233 (492)
T ss_pred HHHHh----CCCEEEEEeCCCCC-CHHHHHHHHHHHH----HhCCcEEEeehHHcCHHHHHHHHHHHH
Confidence 44333 79999999987733 3334445544432 345566766654 3445555555443
No 412
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.91 E-value=0.00013 Score=56.98 Aligned_cols=108 Identities=19% Similarity=0.231 Sum_probs=59.4
Q ss_pred ccEEEEEcCCCCChHHHHHhhhcCC----------ccccc--------------CccceeEEEEE-----------ECCe
Q 030233 17 RIKLLMVGLDASGKTTILYKMKLGE----------IVTTT--------------PTIGFNVEAVE-----------YKNK 61 (181)
Q Consensus 17 ~~~i~~~G~~~~GKssl~~~~~~~~----------~~~~~--------------~~~~~~~~~~~-----------~~~~ 61 (181)
.-.++++|++|+||||++..++..- ..... ...++...... ..+.
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~~ 429 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRDY 429 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhccC
Confidence 4578999999999999998886421 00000 01111111111 1457
Q ss_pred EEEEEEcCCChhhHHH----HH--hhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 030233 62 SFCVWDVGGQNKIRAL----WR--HYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPN 132 (181)
Q Consensus 62 ~~~i~d~~g~~~~~~~----~~--~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~ 132 (181)
.+.++||+|....... .. .... ....++|++.+. +.......+..+.. ..+.-+|+||.|...
T Consensus 430 DLVLIDTaG~s~~D~~l~eeL~~L~aa~-~~a~lLVLpAts--s~~Dl~eii~~f~~-----~~~~gvILTKlDEt~ 498 (559)
T PRK12727 430 KLVLIDTAGMGQRDRALAAQLNWLRAAR-QVTSLLVLPANA--HFSDLDEVVRRFAH-----AKPQGVVLTKLDETG 498 (559)
T ss_pred CEEEecCCCcchhhHHHHHHHHHHHHhh-cCCcEEEEECCC--ChhHHHHHHHHHHh-----hCCeEEEEecCcCcc
Confidence 8999999995432211 10 1111 235677777753 34444444444322 235679999999744
No 413
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=97.89 E-value=0.00052 Score=50.77 Aligned_cols=91 Identities=16% Similarity=0.148 Sum_probs=53.4
Q ss_pred eEEEEEEcCCChhhHHHHHhhcc--------CCCEEEEEEECCCccc-HHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCC
Q 030233 61 KSFCVWDVGGQNKIRALWRHYFR--------DTLGLTFVVDSSDRER-ISEARNELHQILSDNELSNAALLVFANKQDLP 131 (181)
Q Consensus 61 ~~~~i~d~~g~~~~~~~~~~~~~--------~~d~ii~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~ 131 (181)
....++++.|-..=..+...+.. ..|.++-|+|+.+-.. .....+.+...+...+ ++++||.|+.
T Consensus 85 ~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~AD------~ivlNK~Dlv 158 (323)
T COG0523 85 PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAFAD------VIVLNKTDLV 158 (323)
T ss_pred CCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHhCc------EEEEecccCC
Confidence 56778888883322222222222 3578999999975322 2224455555555433 8999999998
Q ss_pred CCCCHHHHHhhhCccccCCccEEEEEeec
Q 030233 132 NVMPTAEVADKLELYSLGQRRWSIQSCSA 160 (181)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (181)
.+...+.+...+.. -....+++.+|.
T Consensus 159 ~~~~l~~l~~~l~~---lnp~A~i~~~~~ 184 (323)
T COG0523 159 DAEELEALEARLRK---LNPRARIIETSY 184 (323)
T ss_pred CHHHHHHHHHHHHH---hCCCCeEEEccc
Confidence 85544444444432 234557788776
No 414
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.87 E-value=6.7e-05 Score=56.57 Aligned_cols=23 Identities=35% Similarity=0.434 Sum_probs=20.4
Q ss_pred ccEEEEEcCCCCChHHHHHhhhc
Q 030233 17 RIKLLMVGLDASGKTTILYKMKL 39 (181)
Q Consensus 17 ~~~i~~~G~~~~GKssl~~~~~~ 39 (181)
.-.|+++|++|+||||++..++.
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~ 263 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAW 263 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHH
Confidence 45799999999999999999964
No 415
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.86 E-value=6e-05 Score=57.49 Aligned_cols=109 Identities=14% Similarity=0.157 Sum_probs=59.1
Q ss_pred ccEEEEEcCCCCChHHHHHhhhcCCcc----cc-----c---------------CccceeEEEE-----------EECCe
Q 030233 17 RIKLLMVGLDASGKTTILYKMKLGEIV----TT-----T---------------PTIGFNVEAV-----------EYKNK 61 (181)
Q Consensus 17 ~~~i~~~G~~~~GKssl~~~~~~~~~~----~~-----~---------------~~~~~~~~~~-----------~~~~~ 61 (181)
.-.++++|++|+||||++..+++.... .. . ...++..... ...+.
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~~ 270 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRGK 270 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcCC
Confidence 347999999999999999988653100 00 0 0111111111 11456
Q ss_pred EEEEEEcCCChhhH----HHHHhhc--cCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 030233 62 SFCVWDVGGQNKIR----ALWRHYF--RDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPN 132 (181)
Q Consensus 62 ~~~i~d~~g~~~~~----~~~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~ 132 (181)
.+.++||+|..... ....... ...+-.++|+|++-. ...+.+.+..+.. -.+-=++++|.|...
T Consensus 271 d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~--~~~~~~~~~~f~~-----~~~~~~I~TKlDEt~ 340 (420)
T PRK14721 271 HMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSS--GDTLDEVISAYQG-----HGIHGCIITKVDEAA 340 (420)
T ss_pred CEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCC--HHHHHHHHHHhcC-----CCCCEEEEEeeeCCC
Confidence 78999999954422 1222221 224567889998732 2233333333211 122347789999754
No 416
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.82 E-value=4e-05 Score=48.96 Aligned_cols=24 Identities=29% Similarity=0.369 Sum_probs=18.9
Q ss_pred cEEEEEcCCCCChHHHHHhhhcCC
Q 030233 18 IKLLMVGLDASGKTTILYKMKLGE 41 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~~~ 41 (181)
--+.+.|++|+|||+++++++...
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~ 28 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQL 28 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHH
T ss_pred cccEEEcCCCCCHHHHHHHHHHHh
Confidence 347899999999999999998754
No 417
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.81 E-value=9.2e-05 Score=39.76 Aligned_cols=44 Identities=25% Similarity=0.304 Sum_probs=27.6
Q ss_pred CCCEEEEEEECCCcc--cHHHHHHHHHHHHcCCCCCCCeEEEEEeCCC
Q 030233 84 DTLGLTFVVDSSDRE--RISEARNELHQILSDNELSNAALLVFANKQD 129 (181)
Q Consensus 84 ~~d~ii~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~piilv~nK~D 129 (181)
-.++++|++|++... +++.....+..+.... .+.|++.|.||+|
T Consensus 13 L~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F--~~~P~i~V~nK~D 58 (58)
T PF06858_consen 13 LADAILFIIDPSEQCGYSIEEQLSLFKEIKPLF--PNKPVIVVLNKID 58 (58)
T ss_dssp T-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHT--TTS-EEEEE--TT
T ss_pred hcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHc--CCCCEEEEEeccC
Confidence 468999999999764 4555556666665442 5899999999998
No 418
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.80 E-value=0.00022 Score=43.70 Aligned_cols=82 Identities=11% Similarity=0.068 Sum_probs=48.7
Q ss_pred EEEEc-CCCCChHHHHHhhhcCCcccccCccceeEEEEEECCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCCcc
Q 030233 20 LLMVG-LDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRE 98 (181)
Q Consensus 20 i~~~G-~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~ 98 (181)
|++.| ..|+||||+...++..-.....+..-.+.. ....+.++|+|+..... ....+..+|.++++.+.+ ..
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~~~~~vl~~d~d----~~~d~viiD~p~~~~~~--~~~~l~~ad~viv~~~~~-~~ 74 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALARRGKRVLLIDLD----PQYDYIIIDTPPSLGLL--TRNALAAADLVLIPVQPS-PL 74 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHhCCCcEEEEeCC----CCCCEEEEeCcCCCCHH--HHHHHHHCCEEEEeccCC-HH
Confidence 56677 668999999776653211111111111100 11678999999864332 236667799999999876 45
Q ss_pred cHHHHHHHHH
Q 030233 99 RISEARNELH 108 (181)
Q Consensus 99 s~~~~~~~~~ 108 (181)
++......+.
T Consensus 75 s~~~~~~~~~ 84 (104)
T cd02042 75 DLDGLEKLLE 84 (104)
T ss_pred HHHHHHHHHH
Confidence 5666555544
No 419
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.78 E-value=0.00034 Score=47.35 Aligned_cols=26 Identities=27% Similarity=0.212 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCChHHHHHhhhcCCcc
Q 030233 18 IKLLMVGLDASGKTTILYKMKLGEIV 43 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~~~~~ 43 (181)
-.++++|++|+|||||++.+++-..+
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~~p 51 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQLIP 51 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCCCC
Confidence 46899999999999999999886543
No 420
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.77 E-value=0.00017 Score=55.48 Aligned_cols=24 Identities=38% Similarity=0.483 Sum_probs=20.4
Q ss_pred CccEEEEEcCCCCChHHHHHhhhc
Q 030233 16 CRIKLLMVGLDASGKTTILYKMKL 39 (181)
Q Consensus 16 ~~~~i~~~G~~~~GKssl~~~~~~ 39 (181)
.+..|+++|.+|+||||++..++.
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~ 117 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLAR 117 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 356799999999999999988853
No 421
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=97.76 E-value=0.0007 Score=50.63 Aligned_cols=77 Identities=19% Similarity=0.229 Sum_probs=45.0
Q ss_pred eEEEEEEcCCChhhHHHHHhhc-------cCCCEEEEEEECCCccc--H--------------------HHHHHHHHHHH
Q 030233 61 KSFCVWDVGGQNKIRALWRHYF-------RDTLGLTFVVDSSDRER--I--------------------SEARNELHQIL 111 (181)
Q Consensus 61 ~~~~i~d~~g~~~~~~~~~~~~-------~~~d~ii~v~d~~~~~s--~--------------------~~~~~~~~~~~ 111 (181)
....++++.|...-..+...+. -..++++.|+|+.+-.. + ......+...+
T Consensus 93 ~d~IvIEtsG~a~P~~i~~~~~~~~l~~~~~l~~vvtvVDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Qi 172 (341)
T TIGR02475 93 PDHILIETSGLALPKPLVQAFQWPEIRSRVTVDGVVTVVDGPAVAAGRFAADPDALDAQRAADDNLDHETPLEELFEDQL 172 (341)
T ss_pred CCEEEEeCCCCCCHHHHHHHhcCccccceEEeeeEEEEEECchhhhhccccchhhhhhhccccccccccchHHHHHHHHH
Confidence 4678899999665444444331 13578999999964210 0 01122333333
Q ss_pred cCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhh
Q 030233 112 SDNELSNAALLVFANKQDLPNVMPTAEVADKL 143 (181)
Q Consensus 112 ~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~ 143 (181)
...+ ++++||+|+..+...+.+...+
T Consensus 173 ~~AD------~IvlnK~Dl~~~~~l~~~~~~l 198 (341)
T TIGR02475 173 ACAD------LVILNKADLLDAAGLARVRAEI 198 (341)
T ss_pred HhCC------EEEEeccccCCHHHHHHHHHHH
Confidence 3322 8999999998755555555554
No 422
>PRK10867 signal recognition particle protein; Provisional
Probab=97.73 E-value=0.00038 Score=53.49 Aligned_cols=22 Identities=41% Similarity=0.573 Sum_probs=18.3
Q ss_pred ccEEEEEcCCCCChHHHHHhhh
Q 030233 17 RIKLLMVGLDASGKTTILYKMK 38 (181)
Q Consensus 17 ~~~i~~~G~~~~GKssl~~~~~ 38 (181)
+..|+++|++|+||||++-.++
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA 121 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLA 121 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHH
Confidence 4568999999999999766664
No 423
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.72 E-value=0.00021 Score=49.79 Aligned_cols=45 Identities=20% Similarity=0.255 Sum_probs=30.8
Q ss_pred ccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCC-CeEEEEEeCCCCC
Q 030233 82 FRDTLGLTFVVDSSDRERISEARNELHQILSDNELSN-AALLVFANKQDLP 131 (181)
Q Consensus 82 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-~piilv~nK~D~~ 131 (181)
.+++|.+|.|+|.+ .+++..... +.++.+. -+ .++.+|+||.|..
T Consensus 153 ~~~vD~vivVvDpS-~~sl~taer-i~~L~~e---lg~k~i~~V~NKv~e~ 198 (255)
T COG3640 153 IEGVDLVIVVVDPS-YKSLRTAER-IKELAEE---LGIKRIFVVLNKVDEE 198 (255)
T ss_pred ccCCCEEEEEeCCc-HHHHHHHHH-HHHHHHH---hCCceEEEEEeeccch
Confidence 35689999999998 455554433 3333333 24 7899999999954
No 424
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.72 E-value=3.1e-05 Score=48.83 Aligned_cols=22 Identities=23% Similarity=0.377 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChHHHHHhhhcC
Q 030233 19 KLLMVGLDASGKTTILYKMKLG 40 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~~ 40 (181)
.|++.|++||||||+++.++..
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999764
No 425
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.71 E-value=8.1e-05 Score=56.57 Aligned_cols=23 Identities=39% Similarity=0.504 Sum_probs=20.0
Q ss_pred ccEEEEEcCCCCChHHHHHhhhc
Q 030233 17 RIKLLMVGLDASGKTTILYKMKL 39 (181)
Q Consensus 17 ~~~i~~~G~~~~GKssl~~~~~~ 39 (181)
...++++|++|+||||++..++.
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~ 245 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAA 245 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34589999999999999999874
No 426
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.70 E-value=0.00029 Score=52.97 Aligned_cols=23 Identities=30% Similarity=0.414 Sum_probs=19.9
Q ss_pred ccEEEEEcCCCCChHHHHHhhhc
Q 030233 17 RIKLLMVGLDASGKTTILYKMKL 39 (181)
Q Consensus 17 ~~~i~~~G~~~~GKssl~~~~~~ 39 (181)
.-.++++|++|+||||++..++.
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~ 228 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGW 228 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 44689999999999999988864
No 427
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.70 E-value=0.00027 Score=45.89 Aligned_cols=104 Identities=13% Similarity=0.158 Sum_probs=59.7
Q ss_pred EEcCCCCChHHHHHhhhcCCcccccCccceeEEE-EEECCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCCcccH
Q 030233 22 MVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEA-VEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERI 100 (181)
Q Consensus 22 ~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~ 100 (181)
.-|.+|+|||++.-.+...-......+.-++... ...-...+.++|+|+.. .......+..+|.++++.+.+ ..++
T Consensus 5 ~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~~~~~~~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~-~~s~ 81 (139)
T cd02038 5 TSGKGGVGKTNISANLALALAKLGKRVLLLDADLGLANLDYDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPE-PTSI 81 (139)
T ss_pred EcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCCCCCCCCCCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCC-hhHH
Confidence 4568899999997666432100000000000000 00011678999999743 233346778899999999986 4555
Q ss_pred HHHHHHHHHHHcCCCCCCCeEEEEEeCCCC
Q 030233 101 SEARNELHQILSDNELSNAALLVFANKQDL 130 (181)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~piilv~nK~D~ 130 (181)
......+..+.... ...++.+++|+++.
T Consensus 82 ~~~~~~l~~l~~~~--~~~~~~lVvN~~~~ 109 (139)
T cd02038 82 TDAYALIKKLAKQL--RVLNFRVVVNRAES 109 (139)
T ss_pred HHHHHHHHHHHHhc--CCCCEEEEEeCCCC
Confidence 55445444443321 35577899999974
No 428
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.69 E-value=0.00015 Score=56.33 Aligned_cols=22 Identities=27% Similarity=0.273 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCChHHHHHhhhc
Q 030233 18 IKLLMVGLDASGKTTILYKMKL 39 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~ 39 (181)
--++++|++|+||||++..+++
T Consensus 257 ~Vi~LvGpnGvGKTTTiaKLA~ 278 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAKLAA 278 (484)
T ss_pred cEEEEECCCCccHHHHHHHHHH
Confidence 4689999999999999999875
No 429
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.68 E-value=0.00019 Score=48.23 Aligned_cols=53 Identities=21% Similarity=0.240 Sum_probs=34.1
Q ss_pred ccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEECCeEEEEEEcCCChhhH
Q 030233 17 RIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIR 75 (181)
Q Consensus 17 ~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~ 75 (181)
..-+.++|.+|||||||+++++..-.. .+.....+......+.+ |.+|.+.++
T Consensus 6 ~~ii~ivG~sgsGKTTLi~~li~~l~~-----~g~~vg~Ik~~~~~~~~-d~~g~Ds~~ 58 (173)
T PRK10751 6 IPLLAIAAWSGTGKTTLLKKLIPALCA-----RGIRPGLIKHTHHDMDV-DKPGKDSYE 58 (173)
T ss_pred ceEEEEECCCCChHHHHHHHHHHHHhh-----cCCeEEEEEEcCCCccc-CCCCcHHHH
Confidence 446899999999999999999855211 13333445554444444 777754433
No 430
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.68 E-value=3.5e-05 Score=54.09 Aligned_cols=23 Identities=26% Similarity=0.300 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChHHHHHhhhcCC
Q 030233 19 KLLMVGLDASGKTTILYKMKLGE 41 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~~~ 41 (181)
-++++|++|||||||++-++|-.
T Consensus 31 fvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999998855
No 431
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.66 E-value=0.00023 Score=57.97 Aligned_cols=109 Identities=17% Similarity=0.181 Sum_probs=59.4
Q ss_pred EEEEEcCCCCChHHHHHhhhcCCccccc------------------------CccceeEEEE-----------EECCeEE
Q 030233 19 KLLMVGLDASGKTTILYKMKLGEIVTTT------------------------PTIGFNVEAV-----------EYKNKSF 63 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~~~~~~~~------------------------~~~~~~~~~~-----------~~~~~~~ 63 (181)
-++++|+.|+||||.+..+++....... ...++..... ...+..+
T Consensus 187 Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~D~ 266 (767)
T PRK14723 187 VLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDKHL 266 (767)
T ss_pred EEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCCCE
Confidence 5899999999999999998753311100 0011111100 1145679
Q ss_pred EEEEcCCChhh----HHHHHhh--ccCCCEEEEEEECCC-cccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 030233 64 CVWDVGGQNKI----RALWRHY--FRDTLGLTFVVDSSD-RERISEARNELHQILSDNELSNAALLVFANKQDLPN 132 (181)
Q Consensus 64 ~i~d~~g~~~~----~~~~~~~--~~~~d~ii~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~ 132 (181)
.++||+|.... ....... ....+-+++|+|++. .+.+.++...|...... .+-=++++|.|...
T Consensus 267 VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~f~~~~~~-----~i~glIlTKLDEt~ 337 (767)
T PRK14723 267 VLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHAYRHGAGE-----DVDGCIITKLDEAT 337 (767)
T ss_pred EEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHHHhhcccC-----CCCEEEEeccCCCC
Confidence 99999993321 1222221 123567889999863 23344443333322110 12246789999754
No 432
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.66 E-value=4.3e-05 Score=51.67 Aligned_cols=23 Identities=26% Similarity=0.540 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCChHHHHHhhhcC
Q 030233 18 IKLLMVGLDASGKTTILYKMKLG 40 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~~ 40 (181)
.+|+++|+||+||||+..+++..
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999876
No 433
>PRK08118 topology modulation protein; Reviewed
Probab=97.63 E-value=5e-05 Score=50.91 Aligned_cols=22 Identities=27% Similarity=0.530 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChHHHHHhhhcC
Q 030233 19 KLLMVGLDASGKTTILYKMKLG 40 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~~ 40 (181)
+|+|+|++|||||||...+...
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999999754
No 434
>PRK07261 topology modulation protein; Provisional
Probab=97.63 E-value=4.8e-05 Score=51.21 Aligned_cols=23 Identities=30% Similarity=0.572 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCChHHHHHhhhcC
Q 030233 18 IKLLMVGLDASGKTTILYKMKLG 40 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~~ 40 (181)
.+|+++|++|+|||||...+...
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 37999999999999999998754
No 435
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.62 E-value=0.00067 Score=52.21 Aligned_cols=132 Identities=17% Similarity=0.238 Sum_probs=67.2
Q ss_pred EEEEEcCCCCChHHHHHhhhcCCc----------ccccC--------------ccceeEEEE-----------EECCeEE
Q 030233 19 KLLMVGLDASGKTTILYKMKLGEI----------VTTTP--------------TIGFNVEAV-----------EYKNKSF 63 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~~~~----------~~~~~--------------~~~~~~~~~-----------~~~~~~~ 63 (181)
.++++|++|+||||++..++.... ....+ ..++..... ...+..+
T Consensus 223 ~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~~~Dl 302 (424)
T PRK05703 223 VVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLRDCDV 302 (424)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhCCCCE
Confidence 689999999999998877753211 00000 011111100 1145789
Q ss_pred EEEEcCCChhhH----HHHHhhcc---CCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH
Q 030233 64 CVWDVGGQNKIR----ALWRHYFR---DTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPT 136 (181)
Q Consensus 64 ~i~d~~g~~~~~----~~~~~~~~---~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~ 136 (181)
.++||+|..... .....++. ...-+.+|++++-. ...+...+..+-.. + +--+++||.|.....
T Consensus 303 VlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~--~~~l~~~~~~f~~~----~-~~~vI~TKlDet~~~-- 373 (424)
T PRK05703 303 ILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTK--YEDLKDIYKHFSRL----P-LDGLIFTKLDETSSL-- 373 (424)
T ss_pred EEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCC--HHHHHHHHHHhCCC----C-CCEEEEecccccccc--
Confidence 999999964322 12222333 23567788888532 22333333332111 1 225889999975422
Q ss_pred HHHHhhhCccccCCccEEEEEeeccCCCCH
Q 030233 137 AEVADKLELYSLGQRRWSIQSCSAISGQGL 166 (181)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 166 (181)
..+.... ...++++..++ +|.++
T Consensus 374 G~i~~~~-----~~~~lPv~yit--~Gq~V 396 (424)
T PRK05703 374 GSILSLL-----IESGLPISYLT--NGQRV 396 (424)
T ss_pred cHHHHHH-----HHHCCCEEEEe--CCCCC
Confidence 2222222 12333566655 66665
No 436
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=97.62 E-value=0.00017 Score=48.61 Aligned_cols=43 Identities=21% Similarity=0.160 Sum_probs=28.3
Q ss_pred CEEEEEEECCCcccHHHHHHHHHHH--HcCCCCCCCeEEEEEeCCCCCCC
Q 030233 86 LGLTFVVDSSDRERISEARNELHQI--LSDNELSNAALLVFANKQDLPNV 133 (181)
Q Consensus 86 d~ii~v~d~~~~~s~~~~~~~~~~~--~~~~~~~~~piilv~nK~D~~~~ 133 (181)
|++++|+|+.++.+-. ...+... +.. .+.|+++|+||+|+.+.
T Consensus 1 DvVl~VvDar~p~~~~--~~~i~~~~~l~~---~~kp~IlVlNK~DL~~~ 45 (172)
T cd04178 1 DVILEVLDARDPLGCR--CPQVEEAVLQAG---GNKKLVLVLNKIDLVPK 45 (172)
T ss_pred CEEEEEEECCCCCCCC--CHHHHHHHHhcc---CCCCEEEEEehhhcCCH
Confidence 7899999998753221 1222222 222 36899999999999753
No 437
>PRK04195 replication factor C large subunit; Provisional
Probab=97.60 E-value=0.0011 Score=52.05 Aligned_cols=24 Identities=25% Similarity=0.353 Sum_probs=21.2
Q ss_pred ccEEEEEcCCCCChHHHHHhhhcC
Q 030233 17 RIKLLMVGLDASGKTTILYKMKLG 40 (181)
Q Consensus 17 ~~~i~~~G~~~~GKssl~~~~~~~ 40 (181)
.-.+++.|++|+||||+++.+++.
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~e 62 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALAND 62 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 456899999999999999999865
No 438
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.58 E-value=0.0012 Score=48.10 Aligned_cols=104 Identities=13% Similarity=0.099 Sum_probs=59.5
Q ss_pred CccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEECCeEEEEEEcCCCh-----------------------
Q 030233 16 CRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQN----------------------- 72 (181)
Q Consensus 16 ~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~----------------------- 72 (181)
+-..++++|++|.|||+++++|.....+..... . ....+....+|...
T Consensus 60 Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~-~--------~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~ 130 (302)
T PF05621_consen 60 RMPNLLIVGDSNNGKTMIIERFRRLHPPQSDED-A--------ERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDRV 130 (302)
T ss_pred CCCceEEecCCCCcHHHHHHHHHHHCCCCCCCC-C--------ccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCCH
Confidence 346799999999999999999998664432211 1 12244555555421
Q ss_pred -hhHHHHHhhccCCCEEEEEEECCC---cccHHHHHHHHHHHHcCCCCCCCeEEEEEeCC
Q 030233 73 -KIRALWRHYFRDTLGLTFVVDSSD---RERISEARNELHQILSDNELSNAALLVFANKQ 128 (181)
Q Consensus 73 -~~~~~~~~~~~~~d~ii~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~ 128 (181)
.........++...+=++++|=-. .-+....+..+..+....+.-++|+|.+|++-
T Consensus 131 ~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~ 190 (302)
T PF05621_consen 131 AKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTRE 190 (302)
T ss_pred HHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHH
Confidence 112223345566777788887421 12233333333333222333689999998753
No 439
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.58 E-value=0.00071 Score=52.00 Aligned_cols=22 Identities=50% Similarity=0.604 Sum_probs=18.3
Q ss_pred ccEEEEEcCCCCChHHHHHhhh
Q 030233 17 RIKLLMVGLDASGKTTILYKMK 38 (181)
Q Consensus 17 ~~~i~~~G~~~~GKssl~~~~~ 38 (181)
+..++++|++|+||||++-.++
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA 120 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLA 120 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHH
Confidence 4579999999999999965554
No 440
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.57 E-value=7.6e-05 Score=51.81 Aligned_cols=28 Identities=29% Similarity=0.127 Sum_probs=23.9
Q ss_pred CCCCccEEEEEcCCCCChHHHHHhhhcC
Q 030233 13 FPQCRIKLLMVGLDASGKTTILYKMKLG 40 (181)
Q Consensus 13 ~~~~~~~i~~~G~~~~GKssl~~~~~~~ 40 (181)
.+++..-|++.|++|||||||++.+++.
T Consensus 2 ~~~~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 2 DKPKGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CCCCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 3566778999999999999999999753
No 441
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.55 E-value=0.0001 Score=50.79 Aligned_cols=27 Identities=26% Similarity=0.276 Sum_probs=22.4
Q ss_pred cEEEEEcCCCCChHHHHHhhhcCCccc
Q 030233 18 IKLLMVGLDASGKTTILYKMKLGEIVT 44 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~~~~~~ 44 (181)
=.++++|++|||||||++++.+-..++
T Consensus 29 evv~iiGpSGSGKSTlLRclN~LE~~~ 55 (240)
T COG1126 29 EVVVIIGPSGSGKSTLLRCLNGLEEPD 55 (240)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCcCCC
Confidence 368999999999999999998765443
No 442
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.55 E-value=9.3e-05 Score=40.70 Aligned_cols=20 Identities=35% Similarity=0.569 Sum_probs=18.0
Q ss_pred EEEEEcCCCCChHHHHHhhh
Q 030233 19 KLLMVGLDASGKTTILYKMK 38 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~ 38 (181)
..++.|+.|+||||++..+.
T Consensus 25 ~tli~G~nGsGKSTllDAi~ 44 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQ 44 (62)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 48999999999999998875
No 443
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=97.53 E-value=0.00011 Score=51.22 Aligned_cols=69 Identities=16% Similarity=0.137 Sum_probs=37.8
Q ss_pred CeEEEEEEcCCChhhH------HHHHhhccCCCEEEEEEEC------CCcccHHHHHH-HHHHHHcCCCCCCCeEEEEEe
Q 030233 60 NKSFCVWDVGGQNKIR------ALWRHYFRDTLGLTFVVDS------SDRERISEARN-ELHQILSDNELSNAALLVFAN 126 (181)
Q Consensus 60 ~~~~~i~d~~g~~~~~------~~~~~~~~~~d~ii~v~d~------~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~n 126 (181)
...+.++|.||+-++- ..+...++..+.-+.++++ ++|..|-...- .+.-++ + ...|-|=|+.
T Consensus 96 ~~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~lL~sl~tMl-~---melphVNvlS 171 (290)
T KOG1533|consen 96 TDHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISSLLVSLATML-H---MELPHVNVLS 171 (290)
T ss_pred cCcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHHHHHHHHHHHH-h---hcccchhhhh
Confidence 4578899999964321 1222333445554444443 34555544322 222222 2 3577788899
Q ss_pred CCCCCC
Q 030233 127 KQDLPN 132 (181)
Q Consensus 127 K~D~~~ 132 (181)
|+|+..
T Consensus 172 K~Dl~~ 177 (290)
T KOG1533|consen 172 KADLLK 177 (290)
T ss_pred HhHHHH
Confidence 999854
No 444
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.53 E-value=7.5e-05 Score=48.50 Aligned_cols=20 Identities=25% Similarity=0.517 Sum_probs=18.5
Q ss_pred EEEEcCCCCChHHHHHhhhc
Q 030233 20 LLMVGLDASGKTTILYKMKL 39 (181)
Q Consensus 20 i~~~G~~~~GKssl~~~~~~ 39 (181)
|+++|++||||||++..+..
T Consensus 2 ii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999974
No 445
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.53 E-value=9.9e-05 Score=51.31 Aligned_cols=28 Identities=25% Similarity=0.204 Sum_probs=24.2
Q ss_pred CCCCccEEEEEcCCCCChHHHHHhhhcC
Q 030233 13 FPQCRIKLLMVGLDASGKTTILYKMKLG 40 (181)
Q Consensus 13 ~~~~~~~i~~~G~~~~GKssl~~~~~~~ 40 (181)
+..+...|++.|++|||||||++.+.+.
T Consensus 2 ~~~~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 2 MMKKPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3457789999999999999999999764
No 446
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.52 E-value=0.00059 Score=51.74 Aligned_cols=109 Identities=24% Similarity=0.180 Sum_probs=60.7
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhcC----C-------cccccC-----------ccceeEEE-------EEE-------
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKLG----E-------IVTTTP-----------TIGFNVEA-------VEY------- 58 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~~----~-------~~~~~~-----------~~~~~~~~-------~~~------- 58 (181)
..+..|+++|-.|+||||.+-.++.- . ...+.| ..++..+. +.+
T Consensus 98 ~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~ 177 (451)
T COG0541 98 KPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEK 177 (451)
T ss_pred CCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHH
Confidence 44677999999999999998777531 0 111111 11111111 111
Q ss_pred ---CCeEEEEEEcCCChhhHHH------HHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCC
Q 030233 59 ---KNKSFCVWDVGGQNKIRAL------WRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQD 129 (181)
Q Consensus 59 ---~~~~~~i~d~~g~~~~~~~------~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D 129 (181)
....+.|+||+|....... .....-..|=+++|+|+.-.+.--+....|..-+.. .=++++|.|
T Consensus 178 ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~e~l~i-------tGvIlTKlD 250 (451)
T COG0541 178 AKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFNEALGI-------TGVILTKLD 250 (451)
T ss_pred HHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHHhhhcCC-------ceEEEEccc
Confidence 4468999999995443221 112223578999999997554444444444443222 124556666
Q ss_pred C
Q 030233 130 L 130 (181)
Q Consensus 130 ~ 130 (181)
.
T Consensus 251 G 251 (451)
T COG0541 251 G 251 (451)
T ss_pred C
Confidence 4
No 447
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.52 E-value=0.0001 Score=51.42 Aligned_cols=25 Identities=28% Similarity=0.262 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChHHHHHhhhcCCcc
Q 030233 19 KLLMVGLDASGKTTILYKMKLGEIV 43 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~~~~~ 43 (181)
-++++|++|||||||+|-+.+-..+
T Consensus 33 ~vaI~GpSGSGKSTLLniig~ld~p 57 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGLDKP 57 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhcccCC
Confidence 4799999999999999998765544
No 448
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.52 E-value=0.0018 Score=43.16 Aligned_cols=26 Identities=15% Similarity=0.097 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCChHHHHHhhhcCCcc
Q 030233 18 IKLLMVGLDASGKTTILYKMKLGEIV 43 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~~~~~ 43 (181)
-.++++|++|+|||||++.+++...+
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~~~ 52 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGLYKP 52 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 46899999999999999999886543
No 449
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.51 E-value=9.8e-05 Score=41.82 Aligned_cols=21 Identities=29% Similarity=0.396 Sum_probs=18.9
Q ss_pred EEEEcCCCCChHHHHHhhhcC
Q 030233 20 LLMVGLDASGKTTILYKMKLG 40 (181)
Q Consensus 20 i~~~G~~~~GKssl~~~~~~~ 40 (181)
|++.|++|+||||+.+.+...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999754
No 450
>PRK06547 hypothetical protein; Provisional
Probab=97.51 E-value=0.00018 Score=48.47 Aligned_cols=34 Identities=29% Similarity=0.310 Sum_probs=27.2
Q ss_pred HHhhhhCCCCccEEEEEcCCCCChHHHHHhhhcC
Q 030233 7 RLAKRFFPQCRIKLLMVGLDASGKTTILYKMKLG 40 (181)
Q Consensus 7 ~~~~~~~~~~~~~i~~~G~~~~GKssl~~~~~~~ 40 (181)
....+..+.....|++.|.+||||||+.+.+...
T Consensus 5 ~~~~~~~~~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 5 LIAARLCGGGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred HHHHHhhcCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3444555677788999999999999999999754
No 451
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.49 E-value=0.0001 Score=47.51 Aligned_cols=26 Identities=27% Similarity=0.199 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCChHHHHHhhhcCCcc
Q 030233 18 IKLLMVGLDASGKTTILYKMKLGEIV 43 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~~~~~ 43 (181)
=.++++|++|+|||||++.+++...+
T Consensus 12 ~~~~i~G~nGsGKStLl~~l~g~~~~ 37 (137)
T PF00005_consen 12 EIVAIVGPNGSGKSTLLKALAGLLPP 37 (137)
T ss_dssp SEEEEEESTTSSHHHHHHHHTTSSHE
T ss_pred CEEEEEccCCCccccceeeecccccc
Confidence 35799999999999999999887544
No 452
>PRK01889 GTPase RsgA; Reviewed
Probab=97.47 E-value=0.0001 Score=55.35 Aligned_cols=25 Identities=20% Similarity=0.355 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCChHHHHHhhhcCCc
Q 030233 18 IKLLMVGLDASGKTTILYKMKLGEI 42 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~~~~ 42 (181)
-+++++|.+|+|||||+|.+++...
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~~~ 220 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGEEV 220 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHhcc
Confidence 4789999999999999999997553
No 453
>PRK08233 hypothetical protein; Provisional
Probab=97.47 E-value=0.00013 Score=49.46 Aligned_cols=25 Identities=16% Similarity=0.226 Sum_probs=21.6
Q ss_pred CccEEEEEcCCCCChHHHHHhhhcC
Q 030233 16 CRIKLLMVGLDASGKTTILYKMKLG 40 (181)
Q Consensus 16 ~~~~i~~~G~~~~GKssl~~~~~~~ 40 (181)
+.+-|++.|.+|||||||.++++..
T Consensus 2 ~~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 2 KTKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhh
Confidence 3567899999999999999999754
No 454
>PRK14530 adenylate kinase; Provisional
Probab=97.46 E-value=0.00013 Score=51.01 Aligned_cols=23 Identities=22% Similarity=0.364 Sum_probs=20.6
Q ss_pred ccEEEEEcCCCCChHHHHHhhhc
Q 030233 17 RIKLLMVGLDASGKTTILYKMKL 39 (181)
Q Consensus 17 ~~~i~~~G~~~~GKssl~~~~~~ 39 (181)
..+|+++|+|||||||+.+.++.
T Consensus 3 ~~~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 3 QPRILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999964
No 455
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.42 E-value=0.0015 Score=47.18 Aligned_cols=109 Identities=20% Similarity=0.160 Sum_probs=60.0
Q ss_pred ccEEEEEcCCCCChHHHHHhhhcCCc--------cc--------------ccCccceeEEEEE--------------ECC
Q 030233 17 RIKLLMVGLDASGKTTILYKMKLGEI--------VT--------------TTPTIGFNVEAVE--------------YKN 60 (181)
Q Consensus 17 ~~~i~~~G~~~~GKssl~~~~~~~~~--------~~--------------~~~~~~~~~~~~~--------------~~~ 60 (181)
.-+++++|++|+||||++..++..-. .. +....++...... ..+
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~ 154 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR 154 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcCC
Confidence 36899999999999999887754210 00 0111122211110 025
Q ss_pred eEEEEEEcCCChhhH----HHHHhhc--cCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 030233 61 KSFCVWDVGGQNKIR----ALWRHYF--RDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPN 132 (181)
Q Consensus 61 ~~~~i~d~~g~~~~~----~~~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~ 132 (181)
..+.++||+|..... ......+ ...+-+++|+|++-. .......+..+.. -.+-=++++|.|...
T Consensus 155 ~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~--~~d~~~~~~~f~~-----~~~~~~I~TKlDet~ 225 (270)
T PRK06731 155 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK--SKDMIEIITNFKD-----IHIDGIVFTKFDETA 225 (270)
T ss_pred CCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccC--HHHHHHHHHHhCC-----CCCCEEEEEeecCCC
Confidence 689999999965321 1122222 245678999998632 2233333333311 123357889999755
No 456
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.42 E-value=0.0011 Score=49.53 Aligned_cols=84 Identities=25% Similarity=0.288 Sum_probs=49.8
Q ss_pred CccEEEEEcCCCCChHHHHHhhhcCC--------------ccc-------------ccCccc--eeEEE----------E
Q 030233 16 CRIKLLMVGLDASGKTTILYKMKLGE--------------IVT-------------TTPTIG--FNVEA----------V 56 (181)
Q Consensus 16 ~~~~i~~~G~~~~GKssl~~~~~~~~--------------~~~-------------~~~~~~--~~~~~----------~ 56 (181)
++--|+++|-.|+||||.+..++... |.. ..|..+ +.... +
T Consensus 100 kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~f 179 (483)
T KOG0780|consen 100 KPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDRF 179 (483)
T ss_pred CCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHHH
Confidence 34569999999999999998886411 100 001111 01111 1
Q ss_pred EECCeEEEEEEcCCChhhHH-HH-----HhhccCCCEEEEEEECCCccc
Q 030233 57 EYKNKSFCVWDVGGQNKIRA-LW-----RHYFRDTLGLTFVVDSSDRER 99 (181)
Q Consensus 57 ~~~~~~~~i~d~~g~~~~~~-~~-----~~~~~~~d~ii~v~d~~~~~s 99 (181)
.-++..+.|.||.|.+.-.. +. ....-..|-+|+|.|++-...
T Consensus 180 Kke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQa 228 (483)
T KOG0780|consen 180 KKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQA 228 (483)
T ss_pred HhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHh
Confidence 12678999999999544222 11 112235799999999975433
No 457
>PHA00729 NTP-binding motif containing protein
Probab=97.42 E-value=0.00026 Score=49.48 Aligned_cols=36 Identities=19% Similarity=0.286 Sum_probs=28.2
Q ss_pred HHHHhhhhCCCCccEEEEEcCCCCChHHHHHhhhcC
Q 030233 5 ISRLAKRFFPQCRIKLLMVGLDASGKTTILYKMKLG 40 (181)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~G~~~~GKssl~~~~~~~ 40 (181)
..++.+.+....-.+|++.|+||+|||+|+.+++..
T Consensus 5 ~k~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 5 AKKIVSAYNNNGFVSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred HHHHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 344555565556678999999999999999998754
No 458
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=97.42 E-value=0.00014 Score=48.95 Aligned_cols=25 Identities=24% Similarity=0.256 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCChHHHHHhhhcCCc
Q 030233 18 IKLLMVGLDASGKTTILYKMKLGEI 42 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~~~~ 42 (181)
=.++++|++|+|||||+|-++|=..
T Consensus 26 e~vAi~GpSGaGKSTLLnLIAGF~~ 50 (231)
T COG3840 26 EIVAILGPSGAGKSTLLNLIAGFET 50 (231)
T ss_pred cEEEEECCCCccHHHHHHHHHhccC
Confidence 3689999999999999999987443
No 459
>PF05729 NACHT: NACHT domain
Probab=97.41 E-value=0.0014 Score=43.43 Aligned_cols=21 Identities=38% Similarity=0.515 Sum_probs=18.8
Q ss_pred EEEEcCCCCChHHHHHhhhcC
Q 030233 20 LLMVGLDASGKTTILYKMKLG 40 (181)
Q Consensus 20 i~~~G~~~~GKssl~~~~~~~ 40 (181)
+.+.|++|+|||+++.+++..
T Consensus 3 l~I~G~~G~GKStll~~~~~~ 23 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQQ 23 (166)
T ss_pred EEEECCCCCChHHHHHHHHHH
Confidence 689999999999999998753
No 460
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.40 E-value=0.00028 Score=47.33 Aligned_cols=22 Identities=32% Similarity=0.449 Sum_probs=18.7
Q ss_pred EEEEEcCCCCChHHHHHhhhcC
Q 030233 19 KLLMVGLDASGKTTILYKMKLG 40 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~~ 40 (181)
+|++.|++|+||||++.+++..
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~ 22 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEE 22 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHH
Confidence 6899999999999999998753
No 461
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.40 E-value=9.4e-05 Score=49.33 Aligned_cols=22 Identities=23% Similarity=0.477 Sum_probs=17.7
Q ss_pred EEEEEcCCCCChHHHHHhhhcC
Q 030233 19 KLLMVGLDASGKTTILYKMKLG 40 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~~ 40 (181)
||++.|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 6899999999999999999865
No 462
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=97.40 E-value=0.00021 Score=47.46 Aligned_cols=51 Identities=29% Similarity=0.458 Sum_probs=33.3
Q ss_pred EEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEECCeEEEEEEcCCChhhH
Q 030233 19 KLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIR 75 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~ 75 (181)
.+.++|.+|+|||||++++...- ...+.....++.....+.+ |.+|...++
T Consensus 3 vi~i~G~~gsGKTTli~~L~~~l-----~~~g~~V~~iK~~~~~~~~-d~~g~Ds~~ 53 (159)
T cd03116 3 VIGFVGYSGSGKTTLLEKLIPAL-----SARGLRVAVIKHDHHDFDI-DTPGKDSYR 53 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH-----HHcCCcEEEEEecCCcccc-cCccchHHH
Confidence 48999999999999999998531 1223334455554444443 777754433
No 463
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=97.40 E-value=0.0035 Score=42.19 Aligned_cols=66 Identities=9% Similarity=-0.016 Sum_probs=44.1
Q ss_pred EEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 030233 62 SFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV 133 (181)
Q Consensus 62 ~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~ 133 (181)
.+.++|+|+..... ....+..+|.++++++.. ..++......+..+... ......+++|+.|....
T Consensus 64 d~viiD~p~~~~~~--~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~~~~~---~~~~~~iv~N~~~~~~~ 129 (179)
T cd02036 64 DYILIDSPAGIERG--FITAIAPADEALLVTTPE-ISSLRDADRVKGLLEAL---GIKVVGVIVNRVRPDMV 129 (179)
T ss_pred CEEEEECCCCCcHH--HHHHHHhCCcEEEEeCCC-cchHHHHHHHHHHHHHc---CCceEEEEEeCCccccc
Confidence 79999999854332 334567899999999886 45566555555544332 23456789999987543
No 464
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=97.40 E-value=0.0017 Score=47.38 Aligned_cols=20 Identities=25% Similarity=0.552 Sum_probs=18.5
Q ss_pred EEEEEcCCCCChHHHHHhhh
Q 030233 19 KLLMVGLDASGKTTILYKMK 38 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~ 38 (181)
.|.+.|.+||||||+++.+.
T Consensus 8 ~i~i~G~~GsGKtt~~~~l~ 27 (288)
T PRK05416 8 LVIVTGLSGAGKSVALRALE 27 (288)
T ss_pred EEEEECCCCCcHHHHHHHHH
Confidence 58999999999999999984
No 465
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.40 E-value=0.00013 Score=47.24 Aligned_cols=25 Identities=24% Similarity=0.420 Sum_probs=22.6
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhc
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKL 39 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~ 39 (181)
+..++|++.|.||+|||||..+++.
T Consensus 5 r~~PNILvtGTPG~GKstl~~~lae 29 (176)
T KOG3347|consen 5 RERPNILVTGTPGTGKSTLAERLAE 29 (176)
T ss_pred hcCCCEEEeCCCCCCchhHHHHHHH
Confidence 4578999999999999999999974
No 466
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.39 E-value=0.0019 Score=49.08 Aligned_cols=109 Identities=20% Similarity=0.232 Sum_probs=60.2
Q ss_pred ccEEEEEcCCCCChHHHHHhhhcCCc------------c---cc-----------cCccceeEEEEE-----------EC
Q 030233 17 RIKLLMVGLDASGKTTILYKMKLGEI------------V---TT-----------TPTIGFNVEAVE-----------YK 59 (181)
Q Consensus 17 ~~~i~~~G~~~~GKssl~~~~~~~~~------------~---~~-----------~~~~~~~~~~~~-----------~~ 59 (181)
+-.++++|++|+||||.+..++..-. . .+ ....++...... ..
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~~ 253 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQSK 253 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHhC
Confidence 45799999999999999988864210 0 00 001122111111 14
Q ss_pred CeEEEEEEcCCChhhHH----HHHhhcc---CCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 030233 60 NKSFCVWDVGGQNKIRA----LWRHYFR---DTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPN 132 (181)
Q Consensus 60 ~~~~~i~d~~g~~~~~~----~~~~~~~---~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~ 132 (181)
+..+.++||+|...... .....+. ...-+++|+|++.. ...+.+.+...... .+-=++++|.|...
T Consensus 254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~--~~~~~~~~~~~~~~-----~~~~~I~TKlDet~ 326 (388)
T PRK12723 254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK--TSDVKEIFHQFSPF-----SYKTVIFTKLDETT 326 (388)
T ss_pred CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC--HHHHHHHHHHhcCC-----CCCEEEEEeccCCC
Confidence 67899999999543211 1222222 12358899999743 33333444443211 13357889999754
No 467
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.38 E-value=0.00015 Score=46.28 Aligned_cols=21 Identities=29% Similarity=0.385 Sum_probs=19.2
Q ss_pred EEEEcCCCCChHHHHHhhhcC
Q 030233 20 LLMVGLDASGKTTILYKMKLG 40 (181)
Q Consensus 20 i~~~G~~~~GKssl~~~~~~~ 40 (181)
|++.|++|+|||++++.++..
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 689999999999999999765
No 468
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.38 E-value=0.0012 Score=43.16 Aligned_cols=26 Identities=23% Similarity=0.229 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCChHHHHHhhhcCCcc
Q 030233 18 IKLLMVGLDASGKTTILYKMKLGEIV 43 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~~~~~ 43 (181)
-.++++|++|+|||||++.+++...+
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~~ 52 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGELEP 52 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCCC
Confidence 35799999999999999999886543
No 469
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.37 E-value=0.00015 Score=53.66 Aligned_cols=22 Identities=27% Similarity=0.424 Sum_probs=20.2
Q ss_pred EEEEcCCCCChHHHHHhhhcCC
Q 030233 20 LLMVGLDASGKTTILYKMKLGE 41 (181)
Q Consensus 20 i~~~G~~~~GKssl~~~~~~~~ 41 (181)
++++|++|||||||++.++|-.
T Consensus 32 ~vllGPSGcGKSTlLr~IAGLe 53 (338)
T COG3839 32 VVLLGPSGCGKSTLLRMIAGLE 53 (338)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 6899999999999999999854
No 470
>PRK06217 hypothetical protein; Validated
Probab=97.34 E-value=0.0002 Score=48.75 Aligned_cols=23 Identities=22% Similarity=0.339 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCChHHHHHhhhcC
Q 030233 18 IKLLMVGLDASGKTTILYKMKLG 40 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~~ 40 (181)
.+|+|+|.+||||||+..++...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999754
No 471
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.34 E-value=0.00063 Score=49.92 Aligned_cols=25 Identities=32% Similarity=0.498 Sum_probs=21.5
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhc
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKL 39 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~ 39 (181)
.+++-|+++|-.|+||||-+-.++.
T Consensus 137 ~~p~Vil~vGVNG~GKTTTIaKLA~ 161 (340)
T COG0552 137 KKPFVILFVGVNGVGKTTTIAKLAK 161 (340)
T ss_pred CCcEEEEEEecCCCchHhHHHHHHH
Confidence 3578899999999999999988864
No 472
>PRK03839 putative kinase; Provisional
Probab=97.33 E-value=0.00021 Score=48.48 Aligned_cols=22 Identities=23% Similarity=0.247 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChHHHHHhhhcC
Q 030233 19 KLLMVGLDASGKTTILYKMKLG 40 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~~ 40 (181)
+|+++|.+|+||||+..+++..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999764
No 473
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.33 E-value=0.0002 Score=46.35 Aligned_cols=21 Identities=24% Similarity=0.461 Sum_probs=19.3
Q ss_pred EEEEcCCCCChHHHHHhhhcC
Q 030233 20 LLMVGLDASGKTTILYKMKLG 40 (181)
Q Consensus 20 i~~~G~~~~GKssl~~~~~~~ 40 (181)
|+++|++|+|||||++.++..
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999865
No 474
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.32 E-value=0.00022 Score=48.65 Aligned_cols=23 Identities=26% Similarity=0.492 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChHHHHHhhhcCC
Q 030233 19 KLLMVGLDASGKTTILYKMKLGE 41 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~~~ 41 (181)
.++++|++|+|||||++.+.+..
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 58999999999999999997653
No 475
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.31 E-value=0.0002 Score=51.02 Aligned_cols=21 Identities=29% Similarity=0.309 Sum_probs=19.5
Q ss_pred EEEEEcCCCCChHHHHHhhhc
Q 030233 19 KLLMVGLDASGKTTILYKMKL 39 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~ 39 (181)
-++++|+.|||||||++.+++
T Consensus 30 i~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 30 ITGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 469999999999999999987
No 476
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.31 E-value=0.00021 Score=45.37 Aligned_cols=21 Identities=33% Similarity=0.423 Sum_probs=19.0
Q ss_pred EEEEcCCCCChHHHHHhhhcC
Q 030233 20 LLMVGLDASGKTTILYKMKLG 40 (181)
Q Consensus 20 i~~~G~~~~GKssl~~~~~~~ 40 (181)
|++.|.+||||||+++.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999765
No 477
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.31 E-value=0.00019 Score=49.44 Aligned_cols=21 Identities=29% Similarity=0.290 Sum_probs=19.0
Q ss_pred EEEEcCCCCChHHHHHhhhcC
Q 030233 20 LLMVGLDASGKTTILYKMKLG 40 (181)
Q Consensus 20 i~~~G~~~~GKssl~~~~~~~ 40 (181)
|++.|++|||||||++.+.+.
T Consensus 2 igi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999764
No 478
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.30 E-value=0.00025 Score=45.40 Aligned_cols=27 Identities=30% Similarity=0.239 Sum_probs=22.7
Q ss_pred cEEEEEcCCCCChHHHHHhhhcCCccc
Q 030233 18 IKLLMVGLDASGKTTILYKMKLGEIVT 44 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~~~~~~ 44 (181)
-.+++.|++|+|||+++..++..-...
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~ 29 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPP 29 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCC
Confidence 468999999999999999998765433
No 479
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=97.30 E-value=0.00037 Score=49.18 Aligned_cols=27 Identities=22% Similarity=0.159 Sum_probs=23.3
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhcCC
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKLGE 41 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~~~ 41 (181)
.+.+-+++.|++|+|||||++.+++.-
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l 57 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALL 57 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 457889999999999999999997643
No 480
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.29 E-value=0.00037 Score=48.40 Aligned_cols=26 Identities=19% Similarity=0.353 Sum_probs=21.9
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhcC
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKLG 40 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~~ 40 (181)
.+..-|+++|++|+|||||++.+...
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 34566889999999999999999754
No 481
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=97.29 E-value=0.00036 Score=50.82 Aligned_cols=26 Identities=19% Similarity=0.188 Sum_probs=21.6
Q ss_pred CCCccEEEEEcCCCCChHHHHHhhhc
Q 030233 14 PQCRIKLLMVGLDASGKTTILYKMKL 39 (181)
Q Consensus 14 ~~~~~~i~~~G~~~~GKssl~~~~~~ 39 (181)
...++-|++.|++||||||+++.+.+
T Consensus 59 ~~~p~IIGIaG~~GSGKSTlar~L~~ 84 (290)
T TIGR00554 59 AKIPYIISIAGSVAVGKSTTARILQA 84 (290)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34568899999999999999977643
No 482
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=97.28 E-value=0.00024 Score=46.20 Aligned_cols=22 Identities=36% Similarity=0.439 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChHHHHHhhhcC
Q 030233 19 KLLMVGLDASGKTTILYKMKLG 40 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~~ 40 (181)
.|+++|+.++|||||+..+++.
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999754
No 483
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.28 E-value=0.00022 Score=48.31 Aligned_cols=22 Identities=27% Similarity=0.397 Sum_probs=19.6
Q ss_pred EEEEEcCCCCChHHHHHhhhcC
Q 030233 19 KLLMVGLDASGKTTILYKMKLG 40 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~~ 40 (181)
.++++|++||||||+++.++..
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998764
No 484
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.28 E-value=0.00023 Score=48.49 Aligned_cols=23 Identities=26% Similarity=0.277 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChHHHHHhhhcCC
Q 030233 19 KLLMVGLDASGKTTILYKMKLGE 41 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~~~ 41 (181)
-++++|++|||||||+|-++|--
T Consensus 33 ~vv~lGpSGcGKTTLLnl~AGf~ 55 (259)
T COG4525 33 LVVVLGPSGCGKTTLLNLIAGFV 55 (259)
T ss_pred EEEEEcCCCccHHHHHHHHhcCc
Confidence 57899999999999999998743
No 485
>PTZ00301 uridine kinase; Provisional
Probab=97.27 E-value=0.00029 Score=48.96 Aligned_cols=23 Identities=17% Similarity=0.206 Sum_probs=19.9
Q ss_pred CccEEEEEcCCCCChHHHHHhhh
Q 030233 16 CRIKLLMVGLDASGKTTILYKMK 38 (181)
Q Consensus 16 ~~~~i~~~G~~~~GKssl~~~~~ 38 (181)
+.+-|++.|++|||||||.+.+.
T Consensus 2 ~~~iIgIaG~SgSGKTTla~~l~ 24 (210)
T PTZ00301 2 PCTVIGISGASGSGKSSLSTNIV 24 (210)
T ss_pred CCEEEEEECCCcCCHHHHHHHHH
Confidence 34679999999999999998774
No 486
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.26 E-value=0.0034 Score=49.54 Aligned_cols=87 Identities=15% Similarity=0.123 Sum_probs=45.8
Q ss_pred CEEEEEEECCC---cccHHHHHHHHHHHHcCCCCCCC-eEEEEEeCCCCCCCCCHH-----HHHhhhCccccCCccEEEE
Q 030233 86 LGLTFVVDSSD---RERISEARNELHQILSDNELSNA-ALLVFANKQDLPNVMPTA-----EVADKLELYSLGQRRWSIQ 156 (181)
Q Consensus 86 d~ii~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~-piilv~nK~D~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 156 (181)
-.+|+|=|+-+ .++ ......+...+.. ... |+|++++=+|........ .....+.........+..+
T Consensus 133 ~kvILVEDlPN~~~~~~-~~f~~~L~~~l~~---~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i~~I 208 (519)
T PF03215_consen 133 KKVILVEDLPNVFHRDT-SRFREALRQYLRS---SRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGITRI 208 (519)
T ss_pred ceEEEeeccccccchhH-HHHHHHHHHHHHc---CCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCceEE
Confidence 34566656633 222 4444455554444 344 999999966543221111 0111111111234456677
Q ss_pred EeeccCCCCHHHHHHHHHhh
Q 030233 157 SCSAISGQGLYEGLDWLSNN 176 (181)
Q Consensus 157 ~~Sa~~~~~i~~l~~~i~~~ 176 (181)
.+.+....-+.+.+..|+..
T Consensus 209 ~FNpIa~T~mkKaL~rI~~~ 228 (519)
T PF03215_consen 209 KFNPIAPTFMKKALKRILKK 228 (519)
T ss_pred EecCCCHHHHHHHHHHHHHH
Confidence 77777777777777777664
No 487
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.26 E-value=0.00027 Score=43.46 Aligned_cols=21 Identities=24% Similarity=0.442 Sum_probs=18.7
Q ss_pred cEEEEEcCCCCChHHHHHhhh
Q 030233 18 IKLLMVGLDASGKTTILYKMK 38 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~ 38 (181)
-.++++|++|+|||||++.+.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 357999999999999999876
No 488
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=97.24 E-value=0.00023 Score=49.90 Aligned_cols=21 Identities=24% Similarity=0.180 Sum_probs=18.8
Q ss_pred EEEEcCCCCChHHHHHhhhcC
Q 030233 20 LLMVGLDASGKTTILYKMKLG 40 (181)
Q Consensus 20 i~~~G~~~~GKssl~~~~~~~ 40 (181)
|++.|++|||||||++.+++.
T Consensus 2 igI~G~sGSGKTTla~~L~~~ 22 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQAL 22 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHHH
Confidence 689999999999999999754
No 489
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.23 E-value=0.00034 Score=52.13 Aligned_cols=24 Identities=29% Similarity=0.297 Sum_probs=20.9
Q ss_pred EEEEcCCCCChHHHHHhhhcCCcc
Q 030233 20 LLMVGLDASGKTTILYKMKLGEIV 43 (181)
Q Consensus 20 i~~~G~~~~GKssl~~~~~~~~~~ 43 (181)
++++|++||||||+++.++|=..+
T Consensus 34 ~~lLGPSGcGKTTlLR~IAGfe~p 57 (352)
T COG3842 34 VTLLGPSGCGKTTLLRMIAGFEQP 57 (352)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC
Confidence 689999999999999999985533
No 490
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.22 E-value=0.00029 Score=47.66 Aligned_cols=23 Identities=17% Similarity=0.349 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChHHHHHhhhcCC
Q 030233 19 KLLMVGLDASGKTTILYKMKLGE 41 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~~~ 41 (181)
.|+++|++|+||||+++.+++..
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHccC
Confidence 47999999999999999998753
No 491
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=97.22 E-value=0.0005 Score=50.66 Aligned_cols=25 Identities=36% Similarity=0.375 Sum_probs=22.2
Q ss_pred ccEEEEEcCCCCChHHHHHhhhcCC
Q 030233 17 RIKLLMVGLDASGKTTILYKMKLGE 41 (181)
Q Consensus 17 ~~~i~~~G~~~~GKssl~~~~~~~~ 41 (181)
..+|++.|..||||||++|.+++--
T Consensus 173 r~NILisGGTGSGKTTlLNal~~~i 197 (355)
T COG4962 173 RCNILISGGTGSGKTTLLNALSGFI 197 (355)
T ss_pred ceeEEEeCCCCCCHHHHHHHHHhcC
Confidence 4799999999999999999998653
No 492
>PRK14532 adenylate kinase; Provisional
Probab=97.22 E-value=0.00033 Score=47.84 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCChHHHHHhhhcC
Q 030233 18 IKLLMVGLDASGKTTILYKMKLG 40 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~~ 40 (181)
++|+++|+|||||||+..+++..
T Consensus 1 ~~i~~~G~pGsGKsT~a~~la~~ 23 (188)
T PRK14532 1 MNLILFGPPAAGKGTQAKRLVEE 23 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999754
No 493
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.21 E-value=0.00036 Score=49.20 Aligned_cols=25 Identities=20% Similarity=0.278 Sum_probs=21.7
Q ss_pred CccEEEEEcCCCCChHHHHHhhhcC
Q 030233 16 CRIKLLMVGLDASGKTTILYKMKLG 40 (181)
Q Consensus 16 ~~~~i~~~G~~~~GKssl~~~~~~~ 40 (181)
..++|+++|+|||||||+...++..
T Consensus 5 ~~mrIvl~G~PGsGK~T~a~~La~~ 29 (229)
T PTZ00088 5 GPLKIVLFGAPGVGKGTFAEILSKK 29 (229)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3577999999999999999999753
No 494
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=97.21 E-value=0.00033 Score=49.00 Aligned_cols=24 Identities=29% Similarity=0.289 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCChHHHHHhhhcCC
Q 030233 18 IKLLMVGLDASGKTTILYKMKLGE 41 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~~~ 41 (181)
=.++++|++|+|||||++.++|-.
T Consensus 31 ~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 31 EFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCc
Confidence 357999999999999999999864
No 495
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.21 E-value=0.00033 Score=45.34 Aligned_cols=22 Identities=32% Similarity=0.449 Sum_probs=19.3
Q ss_pred EEEEEcCCCCChHHHHHhhhcC
Q 030233 19 KLLMVGLDASGKTTILYKMKLG 40 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~~ 40 (181)
.|+++|++|+|||+++..++..
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~ 22 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAAL 22 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4799999999999999988753
No 496
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=97.20 E-value=0.00035 Score=48.81 Aligned_cols=24 Identities=29% Similarity=0.313 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCChHHHHHhhhcCC
Q 030233 18 IKLLMVGLDASGKTTILYKMKLGE 41 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~~~ 41 (181)
=.++++|++|+|||||++.++|-.
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 30 EMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999864
No 497
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.20 E-value=0.00031 Score=47.80 Aligned_cols=21 Identities=33% Similarity=0.316 Sum_probs=19.3
Q ss_pred cEEEEEcCCCCChHHHHHhhh
Q 030233 18 IKLLMVGLDASGKTTILYKMK 38 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~ 38 (181)
..|+++|++||||||+++.++
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~ 24 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIV 24 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999999997
No 498
>PRK14531 adenylate kinase; Provisional
Probab=97.19 E-value=0.00037 Score=47.41 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCChHHHHHhhhcC
Q 030233 18 IKLLMVGLDASGKTTILYKMKLG 40 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~~ 40 (181)
.+|+++|+|||||||+...++..
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~ 25 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAA 25 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999988653
No 499
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=97.19 E-value=0.0021 Score=47.65 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=21.4
Q ss_pred ccEEEEEcCCCCChHHHHHhhhcC
Q 030233 17 RIKLLMVGLDASGKTTILYKMKLG 40 (181)
Q Consensus 17 ~~~i~~~G~~~~GKssl~~~~~~~ 40 (181)
+.+|++.|++||||||+++.++..
T Consensus 144 ~~nilI~G~tGSGKTTll~aL~~~ 167 (323)
T PRK13833 144 RLNIVISGGTGSGKTTLANAVIAE 167 (323)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999864
No 500
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.18 E-value=0.00036 Score=49.38 Aligned_cols=23 Identities=30% Similarity=0.287 Sum_probs=20.9
Q ss_pred EEEEEcCCCCChHHHHHhhhcCC
Q 030233 19 KLLMVGLDASGKTTILYKMKLGE 41 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~~~ 41 (181)
.++++|++|+|||||++.++|-.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 28 ILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999764
Done!