Query 030233
Match_columns 181
No_of_seqs 130 out of 1872
Neff 10.9
Searched_HMMs 29240
Date Mon Mar 25 17:06:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030233.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030233hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1moz_A ARL1, ADP-ribosylation 100.0 5.7E-39 2E-43 217.4 17.7 180 1-180 1-181 (183)
2 1zj6_A ADP-ribosylation factor 100.0 1.5E-38 5.2E-43 216.2 19.5 178 1-179 1-178 (187)
3 2x77_A ADP-ribosylation factor 100.0 9E-39 3.1E-43 217.6 17.3 180 1-180 3-185 (189)
4 1ksh_A ARF-like protein 2; sma 100.0 8.8E-38 3E-42 212.2 21.4 178 1-180 3-181 (186)
5 2b6h_A ADP-ribosylation factor 100.0 4.7E-38 1.6E-42 214.7 19.0 176 5-180 17-192 (192)
6 1fzq_A ADP-ribosylation factor 100.0 4.5E-37 1.5E-41 208.0 22.0 167 14-180 13-179 (181)
7 1r8s_A ADP-ribosylation factor 100.0 6.4E-37 2.2E-41 203.8 20.8 164 18-181 1-164 (164)
8 1upt_A ARL1, ADP-ribosylation 100.0 1.7E-36 5.9E-41 202.9 21.4 167 15-181 5-171 (171)
9 4dkx_A RAS-related protein RAB 100.0 9.7E-39 3.3E-43 221.2 9.8 162 12-179 8-176 (216)
10 1m2o_B GTP-binding protein SAR 100.0 2.9E-36 9.9E-41 205.6 20.2 165 13-177 19-190 (190)
11 1zd9_A ADP-ribosylation factor 100.0 8.6E-36 2.9E-40 202.8 21.2 168 13-180 18-186 (188)
12 1f6b_A SAR1; gtpases, N-termin 100.0 4.1E-36 1.4E-40 206.0 18.4 165 13-177 21-197 (198)
13 2h17_A ADP-ribosylation factor 100.0 6.9E-36 2.4E-40 202.1 18.3 164 14-177 18-181 (181)
14 4bas_A ADP-ribosylation factor 100.0 1.3E-35 4.3E-40 203.4 17.3 168 13-180 13-190 (199)
15 2h57_A ADP-ribosylation factor 100.0 4.9E-35 1.7E-39 199.3 18.7 167 14-180 18-188 (190)
16 3o47_A ADP-ribosylation factor 100.0 8.6E-35 3E-39 213.2 18.3 168 14-181 162-329 (329)
17 3q72_A GTP-binding protein RAD 100.0 2.5E-34 8.6E-39 191.6 11.5 159 17-180 2-165 (166)
18 3lvq_E ARF-GAP with SH3 domain 100.0 5.8E-33 2E-37 214.0 20.0 167 14-180 319-485 (497)
19 1ek0_A Protein (GTP-binding pr 100.0 1.3E-33 4.5E-38 188.6 11.6 159 16-180 2-170 (170)
20 2nzj_A GTP-binding protein REM 100.0 1.9E-33 6.6E-38 188.7 11.7 160 15-179 2-169 (175)
21 3ihw_A Centg3; RAS, centaurin, 100.0 4.3E-32 1.5E-36 184.0 18.0 160 12-180 15-181 (184)
22 3kkq_A RAS-related protein M-R 100.0 2.6E-32 8.7E-37 184.7 14.6 162 14-180 15-183 (183)
23 2fg5_A RAB-22B, RAS-related pr 100.0 7.8E-32 2.7E-36 183.8 16.8 160 15-180 21-187 (192)
24 1r2q_A RAS-related protein RAB 100.0 6E-32 2.1E-36 180.5 15.8 160 14-179 3-169 (170)
25 1c1y_A RAS-related protein RAP 100.0 2.2E-32 7.5E-37 182.2 13.4 160 15-178 1-166 (167)
26 2hup_A RAS-related protein RAB 100.0 9.1E-32 3.1E-36 184.8 16.7 160 15-180 27-194 (201)
27 3oes_A GTPase rhebl1; small GT 100.0 2.6E-33 9E-38 192.4 8.9 165 11-180 18-188 (201)
28 2efe_B Small GTP-binding prote 100.0 1.5E-31 5E-36 180.5 17.1 162 13-180 8-176 (181)
29 1u8z_A RAS-related protein RAL 100.0 5.7E-32 1.9E-36 180.2 14.9 161 15-180 2-168 (168)
30 3t5g_A GTP-binding protein RHE 100.0 2.7E-32 9.4E-37 184.2 13.3 161 15-180 4-170 (181)
31 3t1o_A Gliding protein MGLA; G 100.0 3.4E-32 1.2E-36 186.0 13.5 161 13-180 10-193 (198)
32 2iwr_A Centaurin gamma 1; ANK 100.0 1.7E-31 5.9E-36 179.9 16.8 158 13-179 3-169 (178)
33 1x3s_A RAS-related protein RAB 100.0 8.3E-32 2.9E-36 183.8 15.2 161 15-180 13-179 (195)
34 2g6b_A RAS-related protein RAB 100.0 1.2E-31 4.1E-36 180.8 15.7 161 14-180 7-175 (180)
35 3bc1_A RAS-related protein RAB 100.0 1.7E-31 5.9E-36 182.0 16.3 160 15-179 9-185 (195)
36 3q85_A GTP-binding protein REM 100.0 1.6E-31 5.4E-36 178.5 15.6 159 17-180 2-168 (169)
37 2hxs_A RAB-26, RAS-related pro 100.0 9.8E-32 3.4E-36 180.9 14.6 162 14-180 3-174 (178)
38 2fn4_A P23, RAS-related protei 100.0 8.9E-33 3E-37 186.4 9.3 163 13-180 5-173 (181)
39 1z0f_A RAB14, member RAS oncog 100.0 2.8E-31 9.5E-36 178.7 16.6 160 14-179 12-178 (179)
40 2atv_A RERG, RAS-like estrogen 100.0 4.8E-32 1.7E-36 185.4 13.0 168 7-180 18-192 (196)
41 1wms_A RAB-9, RAB9, RAS-relate 100.0 2.3E-31 8E-36 178.9 16.1 162 15-180 5-175 (177)
42 2ew1_A RAS-related protein RAB 100.0 1.5E-31 5.1E-36 183.7 15.4 158 16-179 25-189 (201)
43 1z0j_A RAB-22, RAS-related pro 100.0 3.1E-32 1.1E-36 182.0 11.7 159 15-179 4-169 (170)
44 4dsu_A GTPase KRAS, isoform 2B 100.0 7.2E-32 2.5E-36 183.2 13.7 160 15-179 2-166 (189)
45 2bov_A RAla, RAS-related prote 100.0 1.9E-31 6.4E-36 183.6 15.9 164 11-179 8-177 (206)
46 1kao_A RAP2A; GTP-binding prot 100.0 8.2E-33 2.8E-37 184.1 8.7 160 15-179 1-166 (167)
47 2g3y_A GTP-binding protein GEM 100.0 3.9E-32 1.3E-36 187.6 12.0 160 15-179 35-203 (211)
48 1z08_A RAS-related protein RAB 100.0 1.2E-31 4.2E-36 179.2 14.0 159 15-179 4-169 (170)
49 1z06_A RAS-related protein RAB 100.0 2.1E-32 7.3E-37 186.1 10.5 162 13-179 16-188 (189)
50 2p5s_A RAS and EF-hand domain 100.0 8E-32 2.7E-36 184.7 13.3 164 11-180 22-198 (199)
51 3cbq_A GTP-binding protein REM 100.0 2.8E-32 9.6E-37 186.5 10.9 161 15-180 21-189 (195)
52 2y8e_A RAB-protein 6, GH09086P 100.0 1.5E-32 5.2E-37 184.9 9.3 162 13-180 10-178 (179)
53 2fu5_C RAS-related protein RAB 100.0 7.3E-32 2.5E-36 182.4 12.7 158 16-179 7-171 (183)
54 2bme_A RAB4A, RAS-related prot 100.0 3.4E-31 1.2E-35 179.5 16.0 159 15-179 8-173 (186)
55 3tkl_A RAS-related protein RAB 100.0 4.8E-32 1.6E-36 185.2 11.8 160 15-180 14-180 (196)
56 3reg_A RHO-like small GTPase; 100.0 1.2E-31 4.1E-36 183.1 13.7 160 14-180 20-189 (194)
57 2fh5_B SR-beta, signal recogni 100.0 6E-31 2.1E-35 182.2 17.4 163 15-177 5-214 (214)
58 2a9k_A RAS-related protein RAL 100.0 1.6E-31 5.6E-36 181.0 14.2 162 14-180 15-182 (187)
59 2oil_A CATX-8, RAS-related pro 100.0 3.2E-31 1.1E-35 180.8 15.4 159 15-179 23-188 (193)
60 1zbd_A Rabphilin-3A; G protein 100.0 7.1E-31 2.4E-35 180.4 17.2 159 15-179 6-171 (203)
61 2a5j_A RAS-related protein RAB 100.0 1.2E-31 4E-36 182.8 13.1 159 15-179 19-184 (191)
62 3dz8_A RAS-related protein RAB 100.0 1.1E-32 3.8E-37 187.8 8.0 159 16-180 22-187 (191)
63 2il1_A RAB12; G-protein, GDP, 100.0 5.5E-31 1.9E-35 179.6 16.0 161 15-180 24-191 (192)
64 1z2a_A RAS-related protein RAB 100.0 7.4E-32 2.5E-36 179.8 11.4 159 15-180 3-168 (168)
65 2f7s_A C25KG, RAS-related prot 100.0 2.7E-31 9.2E-36 184.4 14.5 160 15-179 23-199 (217)
66 1g16_A RAS-related protein SEC 100.0 1E-31 3.5E-36 179.5 11.9 159 16-180 2-166 (170)
67 3q3j_B RHO-related GTP-binding 100.0 1.1E-31 3.9E-36 186.0 12.4 161 13-180 23-204 (214)
68 3tw8_B RAS-related protein RAB 100.0 3.6E-32 1.2E-36 183.4 9.6 158 15-179 7-171 (181)
69 3clv_A RAB5 protein, putative; 100.0 1.5E-30 5E-35 178.7 17.9 158 14-179 4-204 (208)
70 2ce2_X GTPase HRAS; signaling 100.0 4.2E-31 1.4E-35 175.6 14.7 160 16-180 2-166 (166)
71 2gf9_A RAS-related protein RAB 100.0 3.4E-31 1.2E-35 180.2 13.9 159 15-179 20-185 (189)
72 1ky3_A GTP-binding protein YPT 100.0 1.1E-31 3.7E-36 181.2 10.9 163 14-180 5-179 (182)
73 2erx_A GTP-binding protein DI- 100.0 6.6E-32 2.2E-36 180.6 9.6 160 16-180 2-168 (172)
74 2bcg_Y Protein YP2, GTP-bindin 100.0 6.1E-31 2.1E-35 181.2 14.5 159 15-179 6-171 (206)
75 4djt_A GTP-binding nuclear pro 100.0 8.7E-32 3E-36 187.0 10.2 161 14-180 8-176 (218)
76 2yc2_C IFT27, small RAB-relate 100.0 1.8E-31 6.3E-36 183.8 11.0 160 15-179 18-192 (208)
77 3c5c_A RAS-like protein 12; GD 100.0 2.7E-31 9.4E-36 180.4 11.6 162 13-180 17-187 (187)
78 3gj0_A GTP-binding nuclear pro 100.0 8.2E-32 2.8E-36 187.5 9.0 161 13-180 11-176 (221)
79 2gf0_A GTP-binding protein DI- 100.0 8.7E-31 3E-35 179.3 13.7 161 15-180 6-172 (199)
80 3con_A GTPase NRAS; structural 100.0 1.3E-30 4.6E-35 177.3 14.4 163 13-180 17-184 (190)
81 2o52_A RAS-related protein RAB 100.0 7.2E-31 2.5E-35 180.2 13.1 159 15-179 23-188 (200)
82 1vg8_A RAS-related protein RAB 100.0 7.4E-31 2.5E-35 180.7 12.9 162 14-179 5-175 (207)
83 3cph_A RAS-related protein SEC 100.0 1E-30 3.5E-35 180.8 13.3 160 14-179 17-182 (213)
84 1m7b_A RND3/RHOE small GTP-bin 100.0 1.2E-30 4.2E-35 176.7 13.0 161 14-180 4-184 (184)
85 3cpj_B GTP-binding protein YPT 100.0 2.3E-31 7.9E-36 185.5 9.5 161 14-180 10-177 (223)
86 2atx_A Small GTP binding prote 100.0 2.3E-30 8E-35 176.7 13.7 158 15-179 16-193 (194)
87 2gco_A H9, RHO-related GTP-bin 100.0 4.2E-30 1.4E-34 176.4 14.7 165 13-179 21-200 (201)
88 4gzl_A RAS-related C3 botulinu 100.0 2.6E-30 9E-35 177.9 13.6 164 12-177 25-203 (204)
89 1mh1_A RAC1; GTP-binding, GTPa 100.0 2.5E-30 8.7E-35 175.1 13.3 164 15-180 3-181 (186)
90 2fv8_A H6, RHO-related GTP-bin 100.0 2.4E-30 8.2E-35 178.4 13.3 167 12-180 20-201 (207)
91 2j1l_A RHO-related GTP-binding 100.0 2.7E-30 9.1E-35 179.1 13.5 164 15-180 32-210 (214)
92 2q3h_A RAS homolog gene family 100.0 1.7E-30 6E-35 178.2 12.3 161 12-179 15-195 (201)
93 2j0v_A RAC-like GTP-binding pr 100.0 1.2E-30 4.1E-35 180.4 11.4 160 14-180 6-181 (212)
94 3llu_A RAS-related GTP-binding 100.0 5.7E-31 2E-35 180.1 9.5 162 13-177 16-195 (196)
95 1gwn_A RHO-related GTP-binding 100.0 3.8E-30 1.3E-34 177.2 12.9 160 15-180 26-205 (205)
96 2cjw_A GTP-binding protein GEM 100.0 8.6E-31 2.9E-35 178.7 9.2 159 15-178 4-171 (192)
97 3bwd_D RAC-like GTP-binding pr 100.0 9.8E-31 3.4E-35 176.6 9.3 160 13-179 4-181 (182)
98 2zej_A Dardarin, leucine-rich 100.0 1.2E-30 4.3E-35 176.8 8.9 162 17-180 2-179 (184)
99 3l0i_B RAS-related protein RAB 100.0 2.3E-32 8E-37 187.4 0.2 159 16-180 32-197 (199)
100 1svi_A GTP-binding protein YSX 100.0 4.5E-29 1.6E-33 170.3 13.0 161 13-178 19-194 (195)
101 2lkc_A Translation initiation 100.0 6.5E-29 2.2E-33 167.1 13.5 162 13-180 4-172 (178)
102 3r7w_B Gtpase2, GTP-binding pr 100.0 2.8E-29 9.6E-34 181.5 11.5 157 19-179 1-174 (331)
103 3pqc_A Probable GTP-binding pr 100.0 9.4E-29 3.2E-33 168.5 12.4 160 13-179 19-194 (195)
104 2qu8_A Putative nucleolar GTP- 100.0 6.1E-28 2.1E-32 168.7 16.1 161 15-179 27-205 (228)
105 3th5_A RAS-related C3 botulinu 99.9 6E-31 2E-35 181.0 0.0 164 12-177 25-203 (204)
106 2gj8_A MNME, tRNA modification 100.0 3.1E-28 1.1E-32 163.3 11.8 152 16-179 3-166 (172)
107 2wji_A Ferrous iron transport 100.0 1.8E-27 6.3E-32 158.5 15.2 148 16-178 2-164 (165)
108 2dyk_A GTP-binding protein; GT 100.0 9.1E-28 3.1E-32 158.9 12.6 147 18-177 2-160 (161)
109 3r7w_A Gtpase1, GTP-binding pr 100.0 1.9E-27 6.3E-32 172.9 15.3 162 16-178 2-180 (307)
110 2wkq_A NPH1-1, RAS-related C3 99.9 6.3E-27 2.1E-31 171.8 14.1 159 15-180 153-331 (332)
111 3iev_A GTP-binding protein ERA 99.9 9.3E-27 3.2E-31 169.3 14.5 160 14-179 7-182 (308)
112 2cxx_A Probable GTP-binding pr 99.9 5.2E-28 1.8E-32 164.3 6.9 160 18-180 2-185 (190)
113 4dhe_A Probable GTP-binding pr 99.9 2.7E-27 9.1E-32 164.8 10.7 163 12-179 24-211 (223)
114 2wjg_A FEOB, ferrous iron tran 99.9 2.1E-26 7.1E-31 156.2 14.4 153 13-180 3-170 (188)
115 2f9l_A RAB11B, member RAS onco 99.9 3.8E-27 1.3E-31 161.5 10.4 159 15-179 3-168 (199)
116 3c5h_A Glucocorticoid receptor 99.9 1.3E-28 4.5E-33 174.7 2.6 161 14-178 16-254 (255)
117 2hjg_A GTP-binding protein ENG 99.9 6.8E-27 2.3E-31 177.4 11.8 159 16-179 174-349 (436)
118 1wf3_A GTP-binding protein; GT 99.9 2.4E-26 8.2E-31 166.4 14.0 155 16-179 6-173 (301)
119 3a1s_A Iron(II) transport prot 99.9 1.1E-25 3.8E-30 159.7 14.4 150 14-178 2-166 (258)
120 3i8s_A Ferrous iron transport 99.9 7E-27 2.4E-31 167.4 7.2 150 15-179 1-169 (274)
121 1oix_A RAS-related protein RAB 99.9 2.5E-26 8.6E-31 156.4 8.8 156 16-177 28-190 (191)
122 3iby_A Ferrous iron transport 99.9 1.8E-26 6.2E-31 163.6 7.2 144 18-176 2-164 (256)
123 3sjy_A Translation initiation 99.9 2.1E-25 7.1E-30 167.7 13.0 164 13-179 4-192 (403)
124 3gee_A MNME, tRNA modification 99.9 2.8E-25 9.6E-30 169.3 12.4 154 16-178 232-397 (476)
125 4dcu_A GTP-binding protein ENG 99.9 1.1E-25 3.7E-30 171.7 10.2 160 15-179 193-369 (456)
126 2hjg_A GTP-binding protein ENG 99.9 3.5E-25 1.2E-29 168.0 12.5 151 17-179 3-165 (436)
127 3b1v_A Ferrous iron uptake tra 99.9 4.4E-25 1.5E-29 157.5 11.7 148 16-178 2-163 (272)
128 3dpu_A RAB family protein; roc 99.9 4.3E-25 1.5E-29 171.4 11.5 158 13-180 37-209 (535)
129 1nrj_B SR-beta, signal recogni 99.9 1.8E-26 6E-31 160.2 3.1 119 14-137 9-139 (218)
130 1mky_A Probable GTP-binding pr 99.9 1.4E-24 4.9E-29 164.8 13.4 150 18-178 2-165 (439)
131 3k53_A Ferrous iron transport 99.9 9.9E-24 3.4E-28 150.9 16.3 151 15-179 1-166 (271)
132 2e87_A Hypothetical protein PH 99.9 5.7E-24 2E-28 157.6 15.1 158 15-179 165-336 (357)
133 3ohm_A Guanine nucleotide-bind 99.9 7.3E-24 2.5E-28 154.0 15.1 134 47-180 153-319 (327)
134 1cip_A Protein (guanine nucleo 99.9 2.2E-24 7.4E-29 158.8 11.2 133 48-180 180-345 (353)
135 4dcu_A GTP-binding protein ENG 99.9 1.1E-24 3.8E-29 166.2 9.9 154 13-178 19-184 (456)
136 1lnz_A SPO0B-associated GTP-bi 99.9 1.9E-24 6.5E-29 158.6 10.6 156 19-180 160-331 (342)
137 3qq5_A Small GTP-binding prote 99.9 7.9E-25 2.7E-29 164.4 7.9 152 15-178 32-195 (423)
138 1s0u_A EIF-2-gamma, translatio 99.9 6.6E-23 2.3E-27 154.3 18.3 159 15-178 6-197 (408)
139 1xzp_A Probable tRNA modificat 99.9 5.5E-24 1.9E-28 162.4 12.5 149 17-178 243-404 (482)
140 1mky_A Probable GTP-binding pr 99.9 7.1E-24 2.4E-28 161.0 12.8 159 16-179 179-355 (439)
141 1wb1_A Translation elongation 99.9 4.8E-24 1.6E-28 163.2 11.9 160 14-178 16-188 (482)
142 1ega_A Protein (GTP-binding pr 99.9 1.8E-23 6.1E-28 151.5 13.4 156 15-179 6-175 (301)
143 4fid_A G protein alpha subunit 99.9 2.2E-23 7.5E-28 152.0 13.2 133 47-179 147-328 (340)
144 3geh_A MNME, tRNA modification 99.9 1.7E-23 5.8E-28 159.0 12.3 150 16-179 223-384 (462)
145 1kk1_A EIF2gamma; initiation o 99.9 3.3E-23 1.1E-27 156.1 13.5 160 14-178 7-199 (410)
146 3tr5_A RF-3, peptide chain rel 99.9 9.8E-23 3.3E-27 157.2 16.0 114 16-134 12-150 (528)
147 2qtf_A Protein HFLX, GTP-bindi 99.9 1.6E-22 5.6E-27 149.6 15.1 159 17-179 178-354 (364)
148 2elf_A Protein translation elo 99.9 4.2E-23 1.4E-27 153.1 11.8 146 19-178 23-179 (370)
149 2ywe_A GTP-binding protein LEP 99.9 1.5E-22 5E-27 157.6 14.9 157 16-179 5-184 (600)
150 3cb4_D GTP-binding protein LEP 99.9 1.7E-22 5.7E-27 157.5 14.4 157 16-179 3-182 (599)
151 2c78_A Elongation factor TU-A; 99.9 9E-23 3.1E-27 153.5 12.4 160 14-178 8-211 (405)
152 1jny_A EF-1-alpha, elongation 99.9 1.7E-23 5.8E-28 158.7 8.1 151 15-169 4-203 (435)
153 3j2k_7 ERF3, eukaryotic polype 99.9 2.6E-22 8.8E-27 152.2 14.5 153 15-171 15-217 (439)
154 1zun_B Sulfate adenylate trans 99.9 4.9E-22 1.7E-26 150.7 16.0 151 15-169 22-214 (434)
155 1d2e_A Elongation factor TU (E 99.9 7.1E-23 2.4E-27 153.6 11.2 158 16-178 2-194 (397)
156 2xtp_A GTPase IMAP family memb 99.9 3E-22 1E-26 142.4 13.5 161 14-179 19-208 (260)
157 3p26_A Elongation factor 1 alp 99.9 1.4E-22 4.9E-27 155.4 12.5 152 14-168 30-227 (483)
158 3izy_P Translation initiation 99.9 3E-24 1E-28 165.2 3.1 158 16-178 3-167 (537)
159 2ged_A SR-beta, signal recogni 99.9 1.3E-23 4.6E-28 142.9 5.9 124 15-143 46-181 (193)
160 1g7s_A Translation initiation 99.9 6E-23 2.1E-27 160.1 9.6 156 15-178 3-217 (594)
161 3izq_1 HBS1P, elongation facto 99.9 9.7E-23 3.3E-27 159.7 9.7 152 15-169 165-362 (611)
162 3lxw_A GTPase IMAP family memb 99.9 6.2E-22 2.1E-26 139.7 12.2 158 15-179 19-208 (247)
163 3t5d_A Septin-7; GTP-binding p 99.9 1.2E-22 4.2E-27 145.4 8.6 157 16-178 7-203 (274)
164 3lxx_A GTPase IMAP family memb 99.9 6.8E-22 2.3E-26 139.0 11.4 159 14-179 26-214 (239)
165 2aka_B Dynamin-1; fusion prote 99.9 1.3E-21 4.3E-26 141.8 12.9 155 16-175 25-249 (299)
166 1zo1_I IF2, translation initia 99.9 1E-23 3.5E-28 161.0 1.0 153 15-176 2-164 (501)
167 1f60_A Elongation factor EEF1A 99.9 6.1E-22 2.1E-26 150.9 9.9 150 15-168 5-201 (458)
168 1r5b_A Eukaryotic peptide chai 99.9 4E-23 1.4E-27 157.7 2.9 156 11-170 37-243 (467)
169 3avx_A Elongation factor TS, e 99.9 2.9E-21 1E-25 157.6 12.1 160 14-178 293-485 (1289)
170 1pui_A ENGB, probable GTP-bind 99.8 1.1E-20 3.7E-25 130.1 11.9 159 12-179 21-199 (210)
171 2h5e_A Peptide chain release f 99.8 1.1E-19 3.9E-24 140.2 18.3 114 16-134 12-150 (529)
172 1dar_A EF-G, elongation factor 99.8 4.3E-20 1.5E-24 146.8 16.1 114 15-133 10-144 (691)
173 2qag_A Septin-2, protein NEDD5 99.8 5.6E-22 1.9E-26 146.9 4.2 157 15-178 35-232 (361)
174 3mca_A HBS1, elongation factor 99.8 1.4E-22 4.7E-27 158.4 -0.1 160 14-177 174-395 (592)
175 1zcb_A G alpha I/13; GTP-bindi 99.8 1.2E-20 4.1E-25 139.4 9.7 133 47-179 187-353 (362)
176 2dy1_A Elongation factor G; tr 99.8 2.4E-19 8.1E-24 142.0 17.3 112 15-131 7-139 (665)
177 2j69_A Bacterial dynamin-like 99.8 2.3E-20 7.7E-25 148.4 10.9 159 15-178 67-324 (695)
178 1jwy_B Dynamin A GTPase domain 99.8 8.2E-20 2.8E-24 133.2 12.7 161 15-179 22-262 (315)
179 2xex_A Elongation factor G; GT 99.8 2.7E-19 9.2E-24 142.2 15.9 116 13-133 6-142 (693)
180 1azs_C GS-alpha; complex (lyas 99.8 6.6E-21 2.2E-25 141.9 5.9 132 48-179 204-385 (402)
181 2rdo_7 EF-G, elongation factor 99.8 1.2E-18 4.2E-23 138.6 18.1 115 14-133 7-149 (704)
182 3def_A T7I23.11 protein; chlor 99.8 6.9E-20 2.4E-24 130.4 9.9 116 15-131 34-164 (262)
183 2xtz_A Guanine nucleotide-bind 99.8 1.8E-20 6.1E-25 138.0 4.0 121 59-179 181-345 (354)
184 1udx_A The GTP-binding protein 99.8 6.2E-19 2.1E-23 132.2 12.1 156 19-180 159-326 (416)
185 1h65_A Chloroplast outer envel 99.8 1.1E-18 3.8E-23 124.7 10.4 117 15-132 37-168 (270)
186 3t34_A Dynamin-related protein 99.8 1.8E-19 6.3E-24 133.6 6.3 149 17-172 34-254 (360)
187 2x2e_A Dynamin-1; nitration, h 99.8 4.5E-19 1.6E-23 131.2 7.1 155 16-175 30-254 (353)
188 3vqt_A RF-3, peptide chain rel 99.8 2.8E-17 9.4E-22 127.5 16.0 110 19-133 33-167 (548)
189 2qnr_A Septin-2, protein NEDD5 99.8 3.1E-19 1.1E-23 129.2 3.9 157 15-179 16-214 (301)
190 3p32_A Probable GTPase RV1496/ 99.7 1.9E-18 6.3E-23 127.9 5.9 152 15-178 77-283 (355)
191 1u0l_A Probable GTPase ENGC; p 99.7 3.8E-19 1.3E-23 128.8 1.7 135 32-176 32-170 (301)
192 1wxq_A GTP-binding protein; st 99.7 1.3E-19 4.3E-24 135.6 -1.2 80 18-97 1-114 (397)
193 2qpt_A EH domain-containing pr 99.7 1.8E-17 6.3E-22 128.6 8.7 114 16-133 64-233 (550)
194 2qag_C Septin-7; cell cycle, c 99.7 1.2E-17 4E-22 125.4 6.9 156 16-177 30-225 (418)
195 3l82_B F-box only protein 4; T 99.7 5E-17 1.7E-21 109.7 9.1 173 7-181 6-225 (227)
196 1n0u_A EF-2, elongation factor 99.7 5.3E-17 1.8E-21 131.5 9.1 113 14-131 16-163 (842)
197 2www_A Methylmalonic aciduria 99.7 3.5E-17 1.2E-21 120.7 6.8 150 16-177 73-277 (349)
198 2wsm_A Hydrogenase expression/ 99.7 2.7E-17 9.1E-22 114.1 5.6 149 15-179 28-214 (221)
199 3zvr_A Dynamin-1; hydrolase, D 99.7 7.2E-16 2.5E-20 122.6 12.5 155 16-175 50-274 (772)
200 1yrb_A ATP(GTP)binding protein 99.7 1.3E-16 4.3E-21 113.4 7.1 116 61-178 109-256 (262)
201 3j25_A Tetracycline resistance 99.7 5.5E-17 1.9E-21 128.1 5.0 156 19-179 4-239 (638)
202 2p67_A LAO/AO transport system 99.6 1.3E-16 4.4E-21 117.4 5.4 108 59-178 147-260 (341)
203 1jal_A YCHF protein; nucleotid 99.6 6.6E-15 2.2E-19 108.4 13.8 80 17-96 2-108 (363)
204 4a9a_A Ribosome-interacting GT 99.6 1.8E-14 6.3E-19 106.5 14.5 111 18-130 73-194 (376)
205 4fn5_A EF-G 1, elongation fact 99.6 3.5E-14 1.2E-18 113.5 17.0 115 13-132 8-151 (709)
206 3l2o_B F-box only protein 4; s 99.6 1.1E-15 3.7E-20 108.0 7.1 111 68-180 194-309 (312)
207 2hf9_A Probable hydrogenase ni 99.6 3.5E-17 1.2E-21 113.9 -4.6 59 119-180 165-225 (226)
208 2dby_A GTP-binding protein; GD 99.5 6.6E-14 2.3E-18 103.6 11.1 79 18-96 2-111 (368)
209 2qm8_A GTPase/ATPase; G protei 99.5 2.9E-14 1E-18 104.6 7.6 152 15-178 53-260 (337)
210 2yv5_A YJEQ protein; hydrolase 99.3 7.8E-13 2.7E-17 95.7 4.7 100 71-176 66-166 (302)
211 2ohf_A Protein OLA1, GTP-bindi 99.3 3.7E-12 1.3E-16 94.7 8.2 84 15-98 20-130 (396)
212 2qag_B Septin-6, protein NEDD5 99.1 1.8E-10 6.3E-15 86.4 7.9 138 16-160 41-217 (427)
213 3h2y_A GTPase family protein; 99.1 6.2E-11 2.1E-15 88.0 5.3 101 70-177 55-158 (368)
214 2j37_W Signal recognition part 99.1 1.8E-09 6.3E-14 82.8 12.9 153 16-176 100-310 (504)
215 3ec1_A YQEH GTPase; atnos1, at 99.1 8.3E-12 2.9E-16 92.7 0.0 116 17-137 162-293 (369)
216 1ni3_A YCHF GTPase, YCHF GTP-b 99.0 1E-09 3.5E-14 81.8 9.3 82 15-96 18-127 (392)
217 3ec1_A YQEH GTPase; atnos1, at 99.0 1.7E-10 5.9E-15 85.7 4.4 102 70-178 57-161 (369)
218 1puj_A YLQF, conserved hypothe 99.0 3E-10 1E-14 81.4 5.1 102 65-178 3-105 (282)
219 3h2y_A GTPase family protein; 99.0 9.7E-11 3.3E-15 86.9 2.6 119 17-140 160-295 (368)
220 3sop_A Neuronal-specific septi 99.0 1.4E-09 5E-14 77.3 7.9 112 17-133 2-155 (270)
221 1tq4_A IIGP1, interferon-induc 99.0 9.9E-09 3.4E-13 77.0 11.5 157 16-179 68-253 (413)
222 1puj_A YLQF, conserved hypothe 98.9 9.8E-10 3.4E-14 78.7 4.4 58 14-71 117-175 (282)
223 3cnl_A YLQF, putative uncharac 98.9 5.4E-10 1.9E-14 79.2 1.6 55 18-72 100-155 (262)
224 2v3c_C SRP54, signal recogniti 98.7 1.5E-08 5E-13 76.7 4.5 153 17-177 99-309 (432)
225 3dm5_A SRP54, signal recogniti 98.5 1.6E-07 5.4E-12 70.9 6.8 109 17-132 100-253 (443)
226 1f5n_A Interferon-induced guan 98.5 1.5E-07 5E-12 73.6 6.4 59 14-72 35-102 (592)
227 3szr_A Interferon-induced GTP- 98.4 4.3E-07 1.5E-11 71.6 7.3 25 19-43 47-71 (608)
228 3cnl_A YLQF, putative uncharac 98.3 6.4E-08 2.2E-12 68.5 -0.6 94 68-176 4-98 (262)
229 1t9h_A YLOQ, probable GTPase E 98.3 1.9E-07 6.5E-12 67.4 1.7 85 80-173 82-171 (307)
230 1bif_A 6-phosphofructo-2-kinas 98.2 3E-07 1E-11 70.4 1.1 96 14-110 36-145 (469)
231 1j8m_F SRP54, signal recogniti 98.1 5.4E-06 1.8E-10 59.7 5.7 108 17-132 98-253 (297)
232 3kl4_A SRP54, signal recogniti 98.1 6.5E-06 2.2E-10 62.2 6.1 109 17-132 97-252 (433)
233 2rcn_A Probable GTPase ENGC; Y 98.0 8.5E-06 2.9E-10 60.0 5.6 86 81-173 127-213 (358)
234 3q5d_A Atlastin-1; G protein, 97.8 2.6E-05 8.8E-10 59.1 4.9 25 15-39 65-89 (447)
235 2xxa_A Signal recognition part 97.8 0.00019 6.4E-09 54.4 9.4 108 17-132 100-254 (433)
236 1ye8_A Protein THEP1, hypothet 97.7 1.8E-05 6.2E-10 52.6 3.0 23 18-40 1-23 (178)
237 3c8u_A Fructokinase; YP_612366 97.7 4.4E-05 1.5E-09 51.9 4.3 37 4-40 7-45 (208)
238 1kgd_A CASK, peripheral plasma 97.6 3.8E-05 1.3E-09 51.1 3.3 23 18-40 6-28 (180)
239 1lvg_A Guanylate kinase, GMP k 97.6 3.7E-05 1.3E-09 52.0 2.7 21 19-39 6-26 (198)
240 1t9h_A YLOQ, probable GTPase E 97.5 8.7E-06 3E-10 58.8 -1.1 24 18-41 174-197 (307)
241 3tr0_A Guanylate kinase, GMP k 97.5 5.2E-05 1.8E-09 51.3 2.8 23 18-40 8-30 (205)
242 3a00_A Guanylate kinase, GMP k 97.5 5E-05 1.7E-09 50.7 2.6 22 20-41 4-25 (186)
243 1zp6_A Hypothetical protein AT 97.5 5.9E-05 2E-09 50.4 2.9 23 18-40 10-32 (191)
244 3ney_A 55 kDa erythrocyte memb 97.5 7.8E-05 2.7E-09 50.3 3.5 28 13-40 15-42 (197)
245 1znw_A Guanylate kinase, GMP k 97.5 5.5E-05 1.9E-09 51.4 2.7 23 19-41 22-44 (207)
246 3ec2_A DNA replication protein 97.5 7E-05 2.4E-09 49.6 3.0 27 15-41 36-62 (180)
247 1s96_A Guanylate kinase, GMP k 97.4 6.5E-05 2.2E-09 51.6 2.8 24 18-41 17-40 (219)
248 1z6g_A Guanylate kinase; struc 97.4 6.5E-05 2.2E-09 51.6 2.7 24 18-41 24-47 (218)
249 4dzz_A Plasmid partitioning pr 97.4 0.00093 3.2E-08 45.0 8.4 69 59-131 74-143 (206)
250 4gp7_A Metallophosphoesterase; 97.4 6.9E-05 2.4E-09 49.4 2.7 21 19-39 11-31 (171)
251 2bbw_A Adenylate kinase 4, AK4 97.4 9.2E-05 3.1E-09 51.7 3.4 23 16-38 26-48 (246)
252 2yvu_A Probable adenylyl-sulfa 97.4 0.00011 3.6E-09 49.0 3.5 33 8-40 4-36 (186)
253 2yv5_A YJEQ protein; hydrolase 97.4 0.0001 3.5E-09 53.2 3.6 24 18-42 166-189 (302)
254 3tif_A Uncharacterized ABC tra 97.4 7.9E-05 2.7E-09 51.8 2.9 24 19-42 33-56 (235)
255 3asz_A Uridine kinase; cytidin 97.4 9.3E-05 3.2E-09 50.3 3.0 25 16-40 5-29 (211)
256 1y63_A LMAJ004144AAA protein; 97.4 0.00014 4.8E-09 48.4 3.7 29 12-40 5-33 (184)
257 2pcj_A ABC transporter, lipopr 97.4 9.7E-05 3.3E-09 51.0 2.9 23 19-41 32-54 (224)
258 1htw_A HI0065; nucleotide-bind 97.4 9.6E-05 3.3E-09 48.1 2.7 25 17-41 33-57 (158)
259 2onk_A Molybdate/tungstate ABC 97.3 0.00012 4.1E-09 51.1 3.0 23 19-41 26-48 (240)
260 3tau_A Guanylate kinase, GMP k 97.3 0.00015 5.3E-09 49.3 3.5 25 17-41 8-32 (208)
261 1ex7_A Guanylate kinase; subst 97.3 8.4E-05 2.9E-09 49.7 2.1 21 20-40 4-24 (186)
262 1kag_A SKI, shikimate kinase I 97.3 0.00012 4.1E-09 48.0 2.8 23 18-40 5-27 (173)
263 2j41_A Guanylate kinase; GMP, 97.3 0.00015 5.1E-09 49.0 3.3 25 17-41 6-30 (207)
264 3gfo_A Cobalt import ATP-bindi 97.3 0.00012 4.3E-09 52.0 2.9 23 19-41 36-58 (275)
265 2rcn_A Probable GTPase ENGC; Y 97.3 0.00014 4.7E-09 53.7 3.2 25 18-42 216-240 (358)
266 1b0u_A Histidine permease; ABC 97.3 0.00013 4.3E-09 51.6 2.9 23 19-41 34-56 (262)
267 1sgw_A Putative ABC transporte 97.3 0.00014 4.6E-09 49.9 2.9 23 19-41 37-59 (214)
268 2cbz_A Multidrug resistance-as 97.3 0.00015 5.1E-09 50.5 3.1 24 19-42 33-56 (237)
269 4eun_A Thermoresistant glucoki 97.3 0.00016 5.6E-09 48.8 3.2 24 16-39 28-51 (200)
270 4g1u_C Hemin import ATP-bindin 97.3 0.00014 4.9E-09 51.5 3.0 23 19-41 39-61 (266)
271 1g6h_A High-affinity branched- 97.3 0.00014 4.9E-09 51.2 2.9 23 19-41 35-57 (257)
272 3lw7_A Adenylate kinase relate 97.3 0.00017 5.9E-09 47.2 3.2 20 18-37 2-21 (179)
273 1jbk_A CLPB protein; beta barr 97.3 0.00032 1.1E-08 46.4 4.5 34 7-40 33-66 (195)
274 1kht_A Adenylate kinase; phosp 97.3 0.00018 6.2E-09 47.9 3.3 23 17-39 3-25 (192)
275 1mv5_A LMRA, multidrug resista 97.3 0.00017 5.8E-09 50.4 3.2 23 19-41 30-52 (243)
276 2ff7_A Alpha-hemolysin translo 97.3 0.00017 5.7E-09 50.6 3.1 23 19-41 37-59 (247)
277 2pze_A Cystic fibrosis transme 97.3 0.00015 5.3E-09 50.1 2.9 23 19-41 36-58 (229)
278 2qor_A Guanylate kinase; phosp 97.3 0.00016 5.5E-09 49.0 2.9 23 18-40 13-35 (204)
279 2olj_A Amino acid ABC transpor 97.3 0.00016 5.4E-09 51.1 2.9 23 19-41 52-74 (263)
280 2bdt_A BH3686; alpha-beta prot 97.2 0.00015 5.2E-09 48.4 2.7 21 19-39 4-24 (189)
281 2ffh_A Protein (FFH); SRP54, s 97.2 0.00027 9.4E-09 53.3 4.3 22 18-39 99-120 (425)
282 1ji0_A ABC transporter; ATP bi 97.2 0.00016 5.6E-09 50.4 2.9 23 19-41 34-56 (240)
283 1tev_A UMP-CMP kinase; ploop, 97.2 0.0002 6.7E-09 47.8 3.2 24 16-39 2-25 (196)
284 1vpl_A ABC transporter, ATP-bi 97.2 0.00017 5.7E-09 50.8 2.9 23 19-41 43-65 (256)
285 2qi9_C Vitamin B12 import ATP- 97.2 0.00017 5.8E-09 50.6 2.9 24 19-42 28-51 (249)
286 2i3b_A HCR-ntpase, human cance 97.2 0.00015 5.2E-09 48.6 2.6 22 19-40 3-24 (189)
287 3end_A Light-independent proto 97.2 0.0042 1.4E-07 44.6 10.3 69 60-130 156-225 (307)
288 3b85_A Phosphate starvation-in 97.2 0.00013 4.5E-09 49.7 2.2 22 19-40 24-45 (208)
289 1rz3_A Hypothetical protein rb 97.2 0.00024 8.1E-09 48.0 3.5 25 15-39 20-44 (201)
290 1u0l_A Probable GTPase ENGC; p 97.2 0.0002 6.8E-09 51.6 3.3 26 18-43 170-195 (301)
291 1knq_A Gluconate kinase; ALFA/ 97.2 0.00024 8.1E-09 46.8 3.4 23 17-39 8-30 (175)
292 1ly1_A Polynucleotide kinase; 97.2 0.00022 7.4E-09 47.0 3.2 22 18-39 3-24 (181)
293 2d2e_A SUFC protein; ABC-ATPas 97.2 0.00018 6.2E-09 50.5 2.9 22 19-40 31-52 (250)
294 1qhx_A CPT, protein (chloramph 97.2 0.00025 8.7E-09 46.7 3.4 22 18-39 4-25 (178)
295 2zu0_C Probable ATP-dependent 97.2 0.00019 6.5E-09 50.8 3.0 22 19-40 48-69 (267)
296 2ghi_A Transport protein; mult 97.2 0.0002 7E-09 50.5 3.1 23 19-41 48-70 (260)
297 2eyu_A Twitching motility prot 97.2 0.00017 6E-09 50.9 2.7 23 18-40 26-48 (261)
298 3fb4_A Adenylate kinase; psych 97.2 0.00021 7.3E-09 48.7 3.1 22 18-39 1-22 (216)
299 3tqc_A Pantothenate kinase; bi 97.2 0.00033 1.1E-08 50.9 4.2 26 14-39 89-114 (321)
300 3aez_A Pantothenate kinase; tr 97.2 0.00037 1.3E-08 50.5 4.5 27 14-40 87-113 (312)
301 2ixe_A Antigen peptide transpo 97.2 0.00019 6.4E-09 51.0 2.9 23 19-41 47-69 (271)
302 2ihy_A ABC transporter, ATP-bi 97.2 0.00021 7.3E-09 50.9 3.2 23 19-41 49-71 (279)
303 3kb2_A SPBC2 prophage-derived 97.2 0.00022 7.4E-09 46.7 3.0 21 19-39 3-23 (173)
304 1cke_A CK, MSSA, protein (cyti 97.2 0.00021 7.2E-09 49.0 3.1 23 17-39 5-27 (227)
305 2cdn_A Adenylate kinase; phosp 97.2 0.0003 1E-08 47.4 3.7 26 14-39 17-42 (201)
306 2vli_A Antibiotic resistance p 97.2 0.00016 5.4E-09 47.9 2.3 26 14-39 2-27 (183)
307 2nq2_C Hypothetical ABC transp 97.2 0.0002 6.9E-09 50.3 2.9 24 19-42 33-56 (253)
308 3cm0_A Adenylate kinase; ATP-b 97.2 0.00026 8.9E-09 47.0 3.3 24 16-39 3-26 (186)
309 2if2_A Dephospho-COA kinase; a 97.2 0.00021 7.3E-09 48.2 2.9 22 18-39 2-23 (204)
310 2yz2_A Putative ABC transporte 97.2 0.0002 6.9E-09 50.7 2.9 23 19-41 35-57 (266)
311 3dl0_A Adenylate kinase; phosp 97.2 0.00023 8E-09 48.5 3.1 22 18-39 1-22 (216)
312 3t61_A Gluconokinase; PSI-biol 97.2 0.00023 7.8E-09 48.1 3.0 23 17-39 18-40 (202)
313 2plr_A DTMP kinase, probable t 97.2 0.00029 9.8E-09 47.7 3.4 24 16-39 3-26 (213)
314 2v9p_A Replication protein E1; 97.2 0.00021 7.3E-09 51.5 2.9 23 17-39 126-148 (305)
315 3uie_A Adenylyl-sulfate kinase 97.2 0.00028 9.6E-09 47.6 3.3 26 15-40 23-48 (200)
316 1jjv_A Dephospho-COA kinase; P 97.1 0.00028 9.5E-09 47.7 3.2 22 18-39 3-24 (206)
317 2pjz_A Hypothetical protein ST 97.1 0.00027 9.4E-09 49.9 3.2 23 19-41 32-54 (263)
318 1uf9_A TT1252 protein; P-loop, 97.1 0.00032 1.1E-08 47.2 3.4 27 14-40 5-31 (203)
319 2jeo_A Uridine-cytidine kinase 97.1 0.00029 9.9E-09 49.1 3.2 25 15-39 23-47 (245)
320 3sr0_A Adenylate kinase; phosp 97.1 0.00029 1E-08 47.9 3.1 22 18-39 1-22 (206)
321 2jaq_A Deoxyguanosine kinase; 97.1 0.00028 9.6E-09 47.5 3.1 21 19-39 2-22 (205)
322 3vaa_A Shikimate kinase, SK; s 97.1 0.00028 9.7E-09 47.5 3.0 22 18-39 26-47 (199)
323 3lnc_A Guanylate kinase, GMP k 97.1 0.00015 5.2E-09 50.1 1.6 23 18-40 28-51 (231)
324 1np6_A Molybdopterin-guanine d 97.1 0.00027 9.2E-09 46.8 2.8 107 18-130 7-125 (174)
325 3trf_A Shikimate kinase, SK; a 97.1 0.00032 1.1E-08 46.6 3.2 23 17-39 5-27 (185)
326 2rhm_A Putative kinase; P-loop 97.1 0.00034 1.2E-08 46.6 3.3 23 17-39 5-27 (193)
327 4a74_A DNA repair and recombin 97.1 0.00024 8.2E-09 48.7 2.6 22 19-40 27-48 (231)
328 1odf_A YGR205W, hypothetical 3 97.1 0.00034 1.2E-08 50.1 3.4 26 14-39 28-53 (290)
329 3tlx_A Adenylate kinase 2; str 97.1 0.00038 1.3E-08 48.6 3.6 25 15-39 27-51 (243)
330 2p65_A Hypothetical protein PF 97.1 0.00042 1.4E-08 45.7 3.6 33 8-40 34-66 (187)
331 3fvq_A Fe(3+) IONS import ATP- 97.1 0.00027 9.1E-09 52.1 2.8 24 19-42 32-55 (359)
332 2qt1_A Nicotinamide riboside k 97.1 0.00038 1.3E-08 47.2 3.3 24 17-40 21-44 (207)
333 4b4t_L 26S protease subunit RP 97.1 0.014 4.6E-07 44.3 12.0 24 17-40 215-238 (437)
334 1aky_A Adenylate kinase; ATP:A 97.1 0.00039 1.3E-08 47.6 3.3 23 17-39 4-26 (220)
335 2ehv_A Hypothetical protein PH 97.1 0.00033 1.1E-08 48.7 2.9 20 19-38 32-51 (251)
336 1nks_A Adenylate kinase; therm 97.0 0.00038 1.3E-08 46.4 3.1 21 19-39 3-23 (194)
337 1e4v_A Adenylate kinase; trans 97.0 0.00037 1.3E-08 47.5 3.0 22 18-39 1-22 (214)
338 1z47_A CYSA, putative ABC-tran 97.0 0.00033 1.1E-08 51.6 2.9 23 19-41 43-65 (355)
339 2bbs_A Cystic fibrosis transme 97.0 0.00036 1.2E-08 50.0 3.0 24 19-42 66-89 (290)
340 1ukz_A Uridylate kinase; trans 97.0 0.00049 1.7E-08 46.4 3.6 26 14-39 12-37 (203)
341 2yyz_A Sugar ABC transporter, 97.0 0.00035 1.2E-08 51.6 2.9 23 19-41 31-53 (359)
342 2x8a_A Nuclear valosin-contain 97.0 0.00033 1.1E-08 49.8 2.7 21 20-40 47-67 (274)
343 2it1_A 362AA long hypothetical 97.0 0.00036 1.2E-08 51.6 3.0 23 19-41 31-53 (362)
344 2f1r_A Molybdopterin-guanine d 97.0 0.00015 5E-09 47.9 0.8 52 19-75 4-55 (171)
345 3rlf_A Maltose/maltodextrin im 97.0 0.00036 1.2E-08 51.8 3.0 23 19-41 31-53 (381)
346 4e22_A Cytidylate kinase; P-lo 97.0 0.00054 1.9E-08 48.0 3.7 24 15-38 25-48 (252)
347 3tui_C Methionine import ATP-b 97.0 0.00037 1.3E-08 51.5 3.0 23 19-41 56-78 (366)
348 1sq5_A Pantothenate kinase; P- 97.0 0.00044 1.5E-08 50.0 3.3 25 15-39 78-102 (308)
349 2v54_A DTMP kinase, thymidylat 97.0 0.00052 1.8E-08 46.2 3.4 24 17-40 4-27 (204)
350 2c95_A Adenylate kinase 1; tra 97.0 0.0005 1.7E-08 46.0 3.3 24 16-39 8-31 (196)
351 3cwq_A Para family chromosome 97.0 0.0077 2.6E-07 40.8 9.3 68 59-132 66-134 (209)
352 1nn5_A Similar to deoxythymidy 97.0 0.00049 1.7E-08 46.7 3.3 24 16-39 8-31 (215)
353 3nh6_A ATP-binding cassette SU 97.0 0.00024 8.1E-09 51.3 1.7 23 19-41 82-104 (306)
354 1zd8_A GTP:AMP phosphotransfer 97.0 0.00045 1.5E-08 47.5 3.1 23 17-39 7-29 (227)
355 2kjq_A DNAA-related protein; s 97.0 0.00029 1E-08 45.3 2.0 25 17-41 36-60 (149)
356 1lw7_A Transcriptional regulat 97.0 0.00029 1E-08 52.1 2.3 25 17-41 170-194 (365)
357 3r20_A Cytidylate kinase; stru 97.0 0.00048 1.6E-08 47.7 3.2 26 14-39 6-31 (233)
358 1gvn_B Zeta; postsegregational 97.0 0.00052 1.8E-08 49.1 3.5 24 16-39 32-55 (287)
359 1v43_A Sugar-binding transport 97.0 0.0004 1.4E-08 51.5 3.0 23 19-41 39-61 (372)
360 1g29_1 MALK, maltose transport 97.0 0.00039 1.3E-08 51.6 2.9 24 19-42 31-54 (372)
361 2pt5_A Shikimate kinase, SK; a 97.0 0.00053 1.8E-08 44.7 3.2 22 18-39 1-22 (168)
362 3iij_A Coilin-interacting nucl 97.0 0.00048 1.6E-08 45.5 3.0 24 16-39 10-33 (180)
363 3jvv_A Twitching mobility prot 97.0 0.0004 1.4E-08 51.3 2.7 22 19-40 125-146 (356)
364 1rj9_A FTSY, signal recognitio 97.0 0.0004 1.4E-08 50.1 2.7 23 17-39 102-124 (304)
365 2wwf_A Thymidilate kinase, put 97.0 0.00054 1.8E-08 46.4 3.2 24 16-39 9-32 (212)
366 3be4_A Adenylate kinase; malar 96.9 0.0005 1.7E-08 47.0 2.9 23 17-39 5-27 (217)
367 2pt7_A CAG-ALFA; ATPase, prote 96.9 0.00049 1.7E-08 50.3 2.9 24 18-41 172-195 (330)
368 1ixz_A ATP-dependent metallopr 96.9 0.00046 1.6E-08 48.3 2.7 21 20-40 52-72 (254)
369 1via_A Shikimate kinase; struc 96.9 0.00052 1.8E-08 45.2 2.7 21 19-39 6-26 (175)
370 1ak2_A Adenylate kinase isoenz 96.9 0.00067 2.3E-08 46.9 3.4 25 15-39 14-38 (233)
371 2xb4_A Adenylate kinase; ATP-b 96.9 0.00062 2.1E-08 46.8 3.2 22 18-39 1-22 (223)
372 1qf9_A UMP/CMP kinase, protein 96.9 0.00074 2.5E-08 44.9 3.5 23 17-39 6-28 (194)
373 3b9q_A Chloroplast SRP recepto 96.9 0.0005 1.7E-08 49.6 2.8 22 18-39 101-122 (302)
374 1zak_A Adenylate kinase; ATP:A 96.9 0.00054 1.9E-08 46.9 2.9 23 17-39 5-27 (222)
375 2f6r_A COA synthase, bifunctio 96.9 0.00071 2.4E-08 48.2 3.5 24 15-38 73-96 (281)
376 3bos_A Putative DNA replicatio 96.9 0.00087 3E-08 46.1 3.9 25 16-40 51-75 (242)
377 2gza_A Type IV secretion syste 96.9 0.00052 1.8E-08 50.8 2.8 24 18-41 176-199 (361)
378 3gd7_A Fusion complex of cysti 96.9 0.00053 1.8E-08 51.2 2.8 22 19-40 49-70 (390)
379 3d31_A Sulfate/molybdate ABC t 96.9 0.00033 1.1E-08 51.5 1.6 23 19-41 28-50 (348)
380 1vht_A Dephospho-COA kinase; s 96.9 0.00073 2.5E-08 46.1 3.3 23 17-39 4-26 (218)
381 2ze6_A Isopentenyl transferase 96.9 0.00055 1.9E-08 48.0 2.7 21 19-39 3-23 (253)
382 2vp4_A Deoxynucleoside kinase; 96.9 0.00076 2.6E-08 46.6 3.4 26 15-40 18-43 (230)
383 1tue_A Replication protein E1; 96.9 0.00079 2.7E-08 45.6 3.3 21 19-39 60-80 (212)
384 2pbr_A DTMP kinase, thymidylat 96.8 0.00074 2.5E-08 45.0 3.2 21 19-39 2-22 (195)
385 4b4t_J 26S protease regulatory 96.8 0.016 5.4E-07 43.4 10.4 24 17-40 182-205 (405)
386 2pez_A Bifunctional 3'-phospho 96.8 0.00077 2.6E-08 44.5 3.1 24 16-39 4-27 (179)
387 4b4t_I 26S protease regulatory 96.8 0.02 6.9E-07 43.2 11.0 24 17-40 216-239 (437)
388 3e70_C DPA, signal recognition 96.8 0.00079 2.7E-08 49.1 3.4 24 16-39 128-151 (328)
389 2ewv_A Twitching motility prot 96.8 0.00061 2.1E-08 50.6 2.9 24 17-40 136-159 (372)
390 1xjc_A MOBB protein homolog; s 96.8 0.00068 2.3E-08 44.5 2.7 22 18-39 5-26 (169)
391 2bwj_A Adenylate kinase 5; pho 96.8 0.00078 2.7E-08 45.1 3.1 23 17-39 12-34 (199)
392 1uj2_A Uridine-cytidine kinase 96.8 0.00081 2.8E-08 47.1 3.3 25 15-39 20-44 (252)
393 1zcb_A G alpha I/13; GTP-bindi 96.8 0.0008 2.7E-08 49.8 3.3 23 15-37 31-53 (362)
394 2p5t_B PEZT; postsegregational 96.8 0.00053 1.8E-08 48.1 2.3 24 16-39 31-54 (253)
395 4b4t_K 26S protease regulatory 96.8 0.017 5.9E-07 43.6 10.5 22 19-40 208-229 (428)
396 2z0h_A DTMP kinase, thymidylat 96.8 0.00084 2.9E-08 44.9 3.1 21 19-39 2-22 (197)
397 3co5_A Putative two-component 96.8 0.0046 1.6E-07 39.2 6.4 24 17-40 27-50 (143)
398 1in4_A RUVB, holliday junction 96.8 0.00065 2.2E-08 49.6 2.7 23 18-40 52-74 (334)
399 1iy2_A ATP-dependent metallopr 96.8 0.00072 2.5E-08 48.0 2.7 21 20-40 76-96 (278)
400 2w0m_A SSO2452; RECA, SSPF, un 96.8 0.00072 2.5E-08 46.3 2.7 21 19-39 25-45 (235)
401 1oxx_K GLCV, glucose, ABC tran 96.8 0.00032 1.1E-08 51.7 0.9 24 19-42 33-56 (353)
402 1p9r_A General secretion pathw 96.7 0.00072 2.5E-08 50.9 2.7 23 18-40 168-190 (418)
403 2oap_1 GSPE-2, type II secreti 96.7 0.00081 2.8E-08 52.0 2.9 24 18-41 261-284 (511)
404 1e6c_A Shikimate kinase; phosp 96.7 0.00096 3.3E-08 43.6 2.9 21 19-39 4-24 (173)
405 3umf_A Adenylate kinase; rossm 96.7 0.00098 3.4E-08 45.7 3.0 23 17-39 28-51 (217)
406 3a4m_A L-seryl-tRNA(SEC) kinas 96.7 0.0011 3.7E-08 46.7 3.3 22 18-39 5-26 (260)
407 3h4m_A Proteasome-activating n 96.7 0.0016 5.5E-08 46.2 4.2 25 16-40 50-74 (285)
408 2og2_A Putative signal recogni 96.7 0.00085 2.9E-08 49.5 2.8 22 18-39 158-179 (359)
409 2iyv_A Shikimate kinase, SK; t 96.7 0.00096 3.3E-08 44.2 2.8 21 19-39 4-24 (184)
410 2chg_A Replication factor C sm 96.7 0.0012 4E-08 44.7 3.4 22 19-40 40-61 (226)
411 1lv7_A FTSH; alpha/beta domain 96.7 0.00091 3.1E-08 46.8 2.8 23 18-40 46-68 (257)
412 1d2n_A N-ethylmaleimide-sensit 96.7 0.0017 5.8E-08 45.9 4.2 27 14-40 61-87 (272)
413 1zuh_A Shikimate kinase; alpha 96.7 0.0012 4.1E-08 43.0 3.1 21 19-39 9-29 (168)
414 3uc9_A Increased recombination 96.7 0.0039 1.3E-07 42.9 5.7 29 13-41 25-53 (233)
415 1gtv_A TMK, thymidylate kinase 96.7 0.00031 1.1E-08 47.7 0.2 21 19-39 2-22 (214)
416 2yhs_A FTSY, cell division pro 96.7 0.00091 3.1E-08 51.3 2.7 23 17-39 293-315 (503)
417 2npi_A Protein CLP1; CLP1-PCF1 96.7 0.00079 2.7E-08 51.4 2.4 26 16-41 137-162 (460)
418 1sxj_E Activator 1 40 kDa subu 96.6 0.0015 5E-08 47.9 3.7 21 19-39 38-58 (354)
419 4eaq_A DTMP kinase, thymidylat 96.6 0.0015 5E-08 45.2 3.5 25 16-40 25-49 (229)
420 1cr0_A DNA primase/helicase; R 96.6 0.00094 3.2E-08 47.8 2.6 22 19-40 37-58 (296)
421 2w58_A DNAI, primosome compone 96.6 0.0023 7.8E-08 43.0 4.3 23 18-40 55-77 (202)
422 2ga8_A Hypothetical 39.9 kDa p 96.6 0.0023 8E-08 47.0 4.4 26 14-39 21-46 (359)
423 2cvh_A DNA repair and recombin 96.6 0.0011 3.8E-08 45.0 2.7 21 19-39 22-42 (220)
424 1m7g_A Adenylylsulfate kinase; 96.6 0.0015 5.1E-08 44.4 3.2 25 15-39 23-47 (211)
425 3te6_A Regulatory protein SIR3 96.6 0.00079 2.7E-08 48.8 1.8 28 13-40 41-68 (318)
426 3kta_A Chromosome segregation 96.6 0.0013 4.5E-08 43.4 2.8 21 19-39 28-48 (182)
427 4b4t_H 26S protease regulatory 96.6 0.026 8.8E-07 43.0 9.9 24 17-40 243-266 (467)
428 2obl_A ESCN; ATPase, hydrolase 96.6 0.0013 4.3E-08 48.4 2.9 26 16-41 70-95 (347)
429 1n0w_A DNA repair protein RAD5 96.6 0.0012 4.3E-08 45.5 2.7 23 18-40 25-47 (243)
430 3nwj_A ATSK2; P loop, shikimat 96.5 0.0012 4E-08 46.3 2.5 23 17-39 48-70 (250)
431 3n70_A Transport activator; si 96.5 0.0025 8.5E-08 40.6 3.8 27 15-41 22-48 (145)
432 2grj_A Dephospho-COA kinase; T 96.5 0.0016 5.6E-08 43.7 3.1 24 17-40 12-35 (192)
433 3t15_A Ribulose bisphosphate c 96.5 0.0018 6.2E-08 46.4 3.4 24 17-40 36-59 (293)
434 1q3t_A Cytidylate kinase; nucl 96.5 0.0018 6.1E-08 44.8 3.2 25 15-39 14-38 (236)
435 1yqt_A RNAse L inhibitor; ATP- 96.5 0.0016 5.4E-08 50.8 3.2 23 19-41 49-71 (538)
436 1a7j_A Phosphoribulokinase; tr 96.5 0.001 3.4E-08 47.7 1.9 24 16-39 4-27 (290)
437 3euj_A Chromosome partition pr 96.5 0.0014 4.7E-08 50.3 2.7 22 18-39 30-51 (483)
438 4b4t_M 26S protease regulatory 96.5 0.0027 9.1E-08 48.1 4.2 24 17-40 215-238 (434)
439 1nij_A Hypothetical protein YJ 96.5 0.0012 4E-08 48.0 2.2 22 19-40 6-27 (318)
440 1sxj_D Activator 1 41 kDa subu 96.5 0.0027 9.1E-08 46.4 4.1 23 18-40 59-81 (353)
441 3b9p_A CG5977-PA, isoform A; A 96.5 0.0015 5.1E-08 46.7 2.7 24 17-40 54-77 (297)
442 3cf0_A Transitional endoplasmi 96.5 0.0029 1E-07 45.4 4.2 24 17-40 49-72 (301)
443 3b60_A Lipid A export ATP-bind 96.4 0.0017 5.7E-08 51.1 3.1 23 19-41 371-393 (582)
444 2dpy_A FLII, flagellum-specifi 96.4 0.0016 5.5E-08 49.4 2.9 26 16-41 156-181 (438)
445 3pfi_A Holliday junction ATP-d 96.4 0.023 8E-07 41.2 9.0 24 17-40 55-78 (338)
446 1svm_A Large T antigen; AAA+ f 96.4 0.0015 5.2E-08 48.5 2.7 23 17-39 169-191 (377)
447 1sxj_C Activator 1 40 kDa subu 96.4 0.002 6.9E-08 47.0 3.3 22 19-40 48-69 (340)
448 1ltq_A Polynucleotide kinase; 96.4 0.002 7E-08 46.1 3.2 22 18-39 3-24 (301)
449 3ake_A Cytidylate kinase; CMP 96.4 0.0022 7.5E-08 43.2 3.2 21 19-39 4-24 (208)
450 2qz4_A Paraplegin; AAA+, SPG7, 96.4 0.0017 5.9E-08 45.4 2.7 23 17-39 39-61 (262)
451 3gmt_A Adenylate kinase; ssgci 96.4 0.0023 7.8E-08 44.2 3.2 23 17-39 8-30 (230)
452 3syl_A Protein CBBX; photosynt 96.4 0.0023 7.8E-08 46.0 3.3 24 16-39 66-89 (309)
453 3j16_B RLI1P; ribosome recycli 96.4 0.0024 8.2E-08 50.4 3.5 25 18-42 104-128 (608)
454 1fnn_A CDC6P, cell division co 96.4 0.0022 7.5E-08 47.4 3.1 22 19-40 46-67 (389)
455 1njg_A DNA polymerase III subu 96.3 0.002 6.8E-08 44.1 2.7 21 19-39 47-67 (250)
456 3b5x_A Lipid A export ATP-bind 96.3 0.0027 9.2E-08 50.0 3.7 23 19-41 371-393 (582)
457 2yl4_A ATP-binding cassette SU 96.3 0.0017 5.8E-08 51.2 2.5 23 19-41 372-394 (595)
458 1nlf_A Regulatory protein REPA 96.3 0.0019 6.5E-08 45.9 2.6 21 19-39 32-52 (279)
459 1p5z_B DCK, deoxycytidine kina 96.3 0.0021 7.1E-08 45.2 2.8 26 15-40 22-47 (263)
460 1f2t_A RAD50 ABC-ATPase; DNA d 96.3 0.0025 8.5E-08 40.9 2.9 19 20-38 26-44 (149)
461 4a82_A Cystic fibrosis transme 96.3 0.0017 5.8E-08 51.1 2.5 23 19-41 369-391 (578)
462 3pxg_A Negative regulator of g 96.3 0.0031 1.1E-07 48.3 3.8 26 15-40 199-224 (468)
463 2h92_A Cytidylate kinase; ross 96.3 0.0022 7.6E-08 43.6 2.8 24 16-39 2-25 (219)
464 3ozx_A RNAse L inhibitor; ATP 96.3 0.0022 7.5E-08 50.0 2.9 24 19-42 296-319 (538)
465 3exa_A TRNA delta(2)-isopenten 96.3 0.0029 9.8E-08 45.8 3.3 24 17-40 3-26 (322)
466 3qf4_B Uncharacterized ABC tra 96.3 0.002 6.7E-08 50.9 2.7 24 18-41 382-405 (598)
467 2xtz_A Guanine nucleotide-bind 96.3 0.0023 7.8E-08 47.2 2.8 24 15-38 7-30 (354)
468 3crm_A TRNA delta(2)-isopenten 96.3 0.0031 1.1E-07 45.8 3.5 23 18-40 6-28 (323)
469 2qgz_A Helicase loader, putati 96.3 0.0047 1.6E-07 44.6 4.5 24 17-40 152-175 (308)
470 3ozx_A RNAse L inhibitor; ATP 96.3 0.0032 1.1E-07 49.0 3.7 26 16-41 24-49 (538)
471 3bk7_A ABC transporter ATP-bin 96.3 0.0032 1.1E-07 49.8 3.7 24 18-41 118-141 (607)
472 1l8q_A Chromosomal replication 96.3 0.0022 7.4E-08 46.5 2.6 23 18-40 38-60 (324)
473 3qf4_A ABC transporter, ATP-bi 96.2 0.0022 7.7E-08 50.5 2.7 23 19-41 371-393 (587)
474 2qmh_A HPR kinase/phosphorylas 96.2 0.0031 1.1E-07 42.5 3.0 25 17-41 34-58 (205)
475 2qby_B CDC6 homolog 3, cell di 96.2 0.0036 1.2E-07 46.2 3.7 24 17-40 45-68 (384)
476 3zvl_A Bifunctional polynucleo 96.2 0.0039 1.3E-07 47.0 3.8 25 16-40 257-281 (416)
477 2px0_A Flagellar biosynthesis 96.2 0.0024 8.3E-08 45.9 2.6 23 17-39 105-127 (296)
478 1c9k_A COBU, adenosylcobinamid 96.2 0.0032 1.1E-07 41.7 3.0 21 20-40 2-22 (180)
479 4ido_A Atlastin-1; GTPase, GTP 96.2 0.0085 2.9E-07 45.5 5.5 24 15-38 65-88 (457)
480 1yqt_A RNAse L inhibitor; ATP- 96.2 0.0039 1.3E-07 48.6 3.8 24 19-42 314-337 (538)
481 1vma_A Cell division protein F 96.2 0.0028 9.7E-08 45.7 2.7 22 18-39 105-126 (306)
482 1xwi_A SKD1 protein; VPS4B, AA 96.1 0.0028 9.5E-08 46.1 2.7 23 18-40 46-68 (322)
483 2dr3_A UPF0273 protein PH0284; 96.1 0.0031 1E-07 43.6 2.8 21 19-39 25-45 (247)
484 3v9p_A DTMP kinase, thymidylat 96.1 0.0032 1.1E-07 43.4 2.8 24 16-39 24-47 (227)
485 2v1u_A Cell division control p 96.1 0.0022 7.4E-08 47.4 2.1 25 16-40 43-67 (387)
486 1ofh_A ATP-dependent HSL prote 96.1 0.0029 1E-07 45.3 2.7 23 17-39 50-72 (310)
487 3bk7_A ABC transporter ATP-bin 96.1 0.0043 1.5E-07 49.0 3.8 25 19-43 384-408 (607)
488 2qby_A CDC6 homolog 1, cell di 96.1 0.0023 7.7E-08 47.2 2.1 24 17-40 45-68 (386)
489 1azs_C GS-alpha; complex (lyas 96.1 0.0036 1.2E-07 46.9 3.1 23 15-37 38-60 (402)
490 3qf7_A RAD50; ABC-ATPase, ATPa 96.1 0.0032 1.1E-07 46.6 2.9 19 20-38 26-44 (365)
491 1hqc_A RUVB; extended AAA-ATPa 96.1 0.027 9.4E-07 40.5 7.8 22 18-39 39-60 (324)
492 4fcw_A Chaperone protein CLPB; 96.1 0.0034 1.2E-07 45.1 2.9 22 19-40 49-70 (311)
493 3j16_B RLI1P; ribosome recycli 96.1 0.0033 1.1E-07 49.7 3.0 24 20-43 381-404 (608)
494 3d3q_A TRNA delta(2)-isopenten 96.0 0.0037 1.2E-07 45.7 2.8 22 18-39 8-29 (340)
495 1pzn_A RAD51, DNA repair and r 96.0 0.0032 1.1E-07 46.3 2.6 23 19-41 133-155 (349)
496 3eie_A Vacuolar protein sortin 96.0 0.0037 1.3E-07 45.3 2.9 24 17-40 51-74 (322)
497 3uk6_A RUVB-like 2; hexameric 96.0 0.0056 1.9E-07 45.0 3.7 22 18-39 71-92 (368)
498 2ocp_A DGK, deoxyguanosine kin 96.0 0.005 1.7E-07 42.6 3.2 24 17-40 2-25 (241)
499 3pvs_A Replication-associated 95.9 0.0075 2.6E-07 45.9 4.3 23 18-40 51-73 (447)
500 2chq_A Replication factor C sm 95.9 0.007 2.4E-07 43.4 3.8 22 19-40 40-61 (319)
No 1
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=5.7e-39 Score=217.40 Aligned_cols=180 Identities=51% Similarity=0.922 Sum_probs=156.9
Q ss_pred CcchHHHHhhhhCC-CCccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEECCeEEEEEEcCCChhhHHHHH
Q 030233 1 MGKLISRLAKRFFP-QCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWR 79 (181)
Q Consensus 1 ~~~~~~~~~~~~~~-~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~ 79 (181)
||.+++++.+.+++ ++.++|+++|++|+|||||+++++++.+..+.+|.+.....+.+.+..+.+|||||++.+...+.
T Consensus 1 mg~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 80 (183)
T 1moz_A 1 MGNIFSSMFDKLWGSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWR 80 (183)
T ss_dssp -CHHHHHHHGGGTTCSSCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCEEEEEETTEEEEEEEEC----CCTTGG
T ss_pred CchHHHHHHHHhcCCCCccEEEEECCCCCCHHHHHHHHhcCCcCccCCcCccceEEEEECCEEEEEEECCCCHhHHHHHH
Confidence 89999999998887 89999999999999999999999988888888999988888888899999999999999888899
Q ss_pred hhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEee
Q 030233 80 HYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCS 159 (181)
Q Consensus 80 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (181)
.+++.+|++++|+|+++++++.....|+..++......+.|+++|+||+|+.+....+++.+.+........+++++++|
T Consensus 81 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~S 160 (183)
T 1moz_A 81 CYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASS 160 (183)
T ss_dssp GTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEEB
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEEcc
Confidence 99999999999999999999999999999987765457899999999999988777788887776655555677999999
Q ss_pred ccCCCCHHHHHHHHHhhhhcc
Q 030233 160 AISGQGLYEGLDWLSNNISVK 180 (181)
Q Consensus 160 a~~~~~i~~l~~~i~~~~~~~ 180 (181)
|++|+|++++|++|.+.+.++
T Consensus 161 a~~~~gi~~l~~~l~~~~~~~ 181 (183)
T 1moz_A 161 AIKGEGITEGLDWLIDVIKEE 181 (183)
T ss_dssp GGGTBTHHHHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHhc
Confidence 999999999999999988654
No 2
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.5e-38 Score=216.23 Aligned_cols=178 Identities=44% Similarity=0.838 Sum_probs=153.7
Q ss_pred CcchHHHHhhhhCCCCccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEECCeEEEEEEcCCChhhHHHHHh
Q 030233 1 MGKLISRLAKRFFPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRH 80 (181)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~ 80 (181)
||.+++++++ ++..+.++|+++|++|+|||||+++++++.+..+.+|.+.+...+.+.+..+.+|||||++.+...+..
T Consensus 1 m~~~~~~~~~-~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 79 (187)
T 1zj6_A 1 MGILFTRIWR-LFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNT 79 (187)
T ss_dssp -CHHHHHHHH-HHTTSCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSCEEEEETTEEEEEEECCC----CGGGHH
T ss_pred CchHHHHHHH-hcCCCccEEEEECCCCCCHHHHHHHHhcCCCCcCcCCCccceEEEEECCEEEEEEECCCCHhHHHHHHH
Confidence 8988999888 777889999999999999999999999888778888998888888889999999999999999999999
Q ss_pred hccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeec
Q 030233 81 YFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSA 160 (181)
Q Consensus 81 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (181)
+++.+|++++|+|++++++++....|+..++......+.|+++|+||+|+.+....+++.+.+....+...+++++++||
T Consensus 80 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa 159 (187)
T 1zj6_A 80 YYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCA 159 (187)
T ss_dssp HHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBT
T ss_pred HhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHhChhhhcCCCcEEEEccC
Confidence 99999999999999999999999999999887644468999999999999877777777777665444556789999999
Q ss_pred cCCCCHHHHHHHHHhhhhc
Q 030233 161 ISGQGLYEGLDWLSNNISV 179 (181)
Q Consensus 161 ~~~~~i~~l~~~i~~~~~~ 179 (181)
++|+|++++|++|.+.+..
T Consensus 160 ~~g~gi~~l~~~l~~~~~~ 178 (187)
T 1zj6_A 160 LTGEGLCQGLEWMMSRLKI 178 (187)
T ss_dssp TTTBTHHHHHHHHHHHHCC
T ss_pred CCCcCHHHHHHHHHHHHHH
Confidence 9999999999999988754
No 3
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=100.00 E-value=9e-39 Score=217.63 Aligned_cols=180 Identities=47% Similarity=0.893 Sum_probs=157.2
Q ss_pred CcchHHHHhh--hhCC-CCccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEECCeEEEEEEcCCChhhHHH
Q 030233 1 MGKLISRLAK--RFFP-QCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRAL 77 (181)
Q Consensus 1 ~~~~~~~~~~--~~~~-~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~ 77 (181)
||.+++++.+ +++. ++.++|+++|++|+|||||+++++++.+..+.||.+.....+...+..+.+|||||++.+...
T Consensus 3 m~~~~~~~~~~l~~f~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~ 82 (189)
T 2x77_A 3 MGAWLASLKQTLGLLPADRKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVNLETLQYKNISFEVWDLGGQTGVRPY 82 (189)
T ss_dssp ---CCSCHHHHHHTSCTTSCEEEEEEEETTSSHHHHHHHTCCSCCEEECSSTTCCEEEEEETTEEEEEEEECCSSSSCCC
T ss_pred hHHHHHHHHHHhhhccCCCceEEEEECCCCCCHHHHHHHHHcCCCCCcCCCCceEEEEEEECCEEEEEEECCCCHhHHHH
Confidence 7777777777 5666 789999999999999999999999988888888999888888889999999999999998888
Q ss_pred HHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEE
Q 030233 78 WRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQS 157 (181)
Q Consensus 78 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (181)
+..+++.+|++++|+|+++++++.....++..++......+.|+++|+||+|+.+....+++.+.+........++++++
T Consensus 83 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (189)
T 2x77_A 83 WRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVK 162 (189)
T ss_dssp CSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEE
T ss_pred HHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhChhhccCCceEEEE
Confidence 88899999999999999999999999999998887655578999999999999887777788877765555566789999
Q ss_pred eeccCCCCHHHHHHHHHhhhhcc
Q 030233 158 CSAISGQGLYEGLDWLSNNISVK 180 (181)
Q Consensus 158 ~Sa~~~~~i~~l~~~i~~~~~~~ 180 (181)
+||++|+|++++|+++.+.+.++
T Consensus 163 ~Sa~~~~gi~~l~~~l~~~i~~~ 185 (189)
T 2x77_A 163 SSSKTGDGLVEGMDWLVERLREQ 185 (189)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHHT
T ss_pred ccCCCccCHHHHHHHHHHHHHhc
Confidence 99999999999999999988765
No 4
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=100.00 E-value=8.8e-38 Score=212.18 Aligned_cols=178 Identities=44% Similarity=0.853 Sum_probs=147.5
Q ss_pred CcchHHHHhhhhCC-CCccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEECCeEEEEEEcCCChhhHHHHH
Q 030233 1 MGKLISRLAKRFFP-QCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWR 79 (181)
Q Consensus 1 ~~~~~~~~~~~~~~-~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~ 79 (181)
|| +++ +.++++. .+.++|+++|++|+|||||+++++++....+.||.+.....+.+.+..+.+|||||++.+...+.
T Consensus 3 mg-~~~-~~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~ 80 (186)
T 1ksh_A 3 MG-LLT-ILKKMKQKERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWR 80 (186)
T ss_dssp ----------------CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSSEEEEEEEETTEEEEEEEECCSHHHHTTGG
T ss_pred cc-hhH-HHHhhcccCCeeEEEEECCCCCCHHHHHHHHhcCCCCcccccCccceEEEEECCEEEEEEECCCCHhHHHHHH
Confidence 66 455 4455555 78899999999999999999999998877778899988888888999999999999999999999
Q ss_pred hhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEee
Q 030233 80 HYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCS 159 (181)
Q Consensus 80 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (181)
.+++.+|++++|+|+++++++.....|+..++......+.|+++|+||+|+.+....+++.+.+........+++++++|
T Consensus 81 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 160 (186)
T 1ksh_A 81 NYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCS 160 (186)
T ss_dssp GGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECC
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCHHHHHHHhChhhccCCceEEEEee
Confidence 99999999999999999999999999999888765556899999999999988777777777766544455678999999
Q ss_pred ccCCCCHHHHHHHHHhhhhcc
Q 030233 160 AISGQGLYEGLDWLSNNISVK 180 (181)
Q Consensus 160 a~~~~~i~~l~~~i~~~~~~~ 180 (181)
|++|+|++++|+++.+.+.++
T Consensus 161 a~~~~gi~~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 161 AVTGEDLLPGIDWLLDDISSR 181 (186)
T ss_dssp TTTCTTHHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHhc
Confidence 999999999999999988754
No 5
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=100.00 E-value=4.7e-38 Score=214.73 Aligned_cols=176 Identities=62% Similarity=1.059 Sum_probs=151.6
Q ss_pred HHHHhhhhCCCCccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEECCeEEEEEEcCCChhhHHHHHhhccC
Q 030233 5 ISRLAKRFFPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRD 84 (181)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~ 84 (181)
+..+++++++++.++|+++|++|+|||||+++++++.+....||.+.....+...+..+.+|||||++.+...+..+++.
T Consensus 17 ~~~~~~~~~~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 96 (192)
T 2b6h_A 17 RGSLFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQN 96 (192)
T ss_dssp CCCGGGGTTTTSCEEEEEEESTTSSHHHHHHHHCSSCCEEEEEETTEEEEEEEETTEEEEEEECC-----CTTHHHHHHT
T ss_pred HHHHHHHhccCCccEEEEECCCCCCHHHHHHHHHhCCccccCCcCceeEEEEEECCEEEEEEECCCCHhHHHHHHHHhcc
Confidence 34466777888999999999999999999999999888878889888888888899999999999999999999999999
Q ss_pred CCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCC
Q 030233 85 TLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQ 164 (181)
Q Consensus 85 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (181)
+|++++|+|+++++++.....|+..++......+.|+++|+||+|+.+....+++.+.+........+++++++||++|.
T Consensus 97 ~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~ 176 (192)
T 2b6h_A 97 TQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGT 176 (192)
T ss_dssp CCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTB
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEECcCCCcC
Confidence 99999999999999999999999998876555689999999999998877778888877665555677899999999999
Q ss_pred CHHHHHHHHHhhhhcc
Q 030233 165 GLYEGLDWLSNNISVK 180 (181)
Q Consensus 165 ~i~~l~~~i~~~~~~~ 180 (181)
|++++|++|.+.+.++
T Consensus 177 gi~~l~~~l~~~i~~q 192 (192)
T 2b6h_A 177 GLYDGLDWLSHELSKR 192 (192)
T ss_dssp THHHHHHHHHHHTTTC
T ss_pred CHHHHHHHHHHHHhcC
Confidence 9999999999988764
No 6
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=100.00 E-value=4.5e-37 Score=208.02 Aligned_cols=167 Identities=43% Similarity=0.843 Sum_probs=146.6
Q ss_pred CCCccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEECCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEE
Q 030233 14 PQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVD 93 (181)
Q Consensus 14 ~~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (181)
|.+.++|+++|++|+|||||++++++..+..+.+|.+++...+.+.+..+.+|||||++.+...+..+++.+|++++|+|
T Consensus 13 ~~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d 92 (181)
T 1fzq_A 13 PDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVID 92 (181)
T ss_dssp CSSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEEEEEEETTEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeEEEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEE
Confidence 46789999999999999999999999988888899998888888889999999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHHHHH
Q 030233 94 SSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWL 173 (181)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i 173 (181)
+++++++.....|+..++......+.|+++|+||+|+.+....+++.+.+.........++++++||++|+|++++|+++
T Consensus 93 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 172 (181)
T 1fzq_A 93 SADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWV 172 (181)
T ss_dssp TTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCHHHHHHHhCchhccCCceEEEEccCCCCCCHHHHHHHH
Confidence 99999999999999888776445689999999999998777777777766554445567799999999999999999999
Q ss_pred Hhhhhcc
Q 030233 174 SNNISVK 180 (181)
Q Consensus 174 ~~~~~~~ 180 (181)
.+.+.++
T Consensus 173 ~~~~~~~ 179 (181)
T 1fzq_A 173 CKNVNAK 179 (181)
T ss_dssp HHTC---
T ss_pred HHHHHhc
Confidence 9988664
No 7
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=100.00 E-value=6.4e-37 Score=203.82 Aligned_cols=164 Identities=70% Similarity=1.133 Sum_probs=144.2
Q ss_pred cEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEECCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCCc
Q 030233 18 IKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDR 97 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~ 97 (181)
++|+++|++|+|||||+++++++.+....||.+.....+...+..+.+|||||++.+...+..+++.+|++++|+|++++
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 80 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 80 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCCEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCG
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCcccCcCceeEEEEEECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEECCCH
Confidence 58999999999999999999998887788898888778888899999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHHHHHHhhh
Q 030233 98 ERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNI 177 (181)
Q Consensus 98 ~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~ 177 (181)
+++.....|+..++......+.|+++|+||+|+.+....+++...+....+...+++++++||++|.|++++|+++.+.+
T Consensus 81 ~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 160 (164)
T 1r8s_A 81 ERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 160 (164)
T ss_dssp GGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHHHHHHHHH
Confidence 99999999999888765556899999999999988777777877776555556678899999999999999999999998
Q ss_pred hccC
Q 030233 178 SVKN 181 (181)
Q Consensus 178 ~~~~ 181 (181)
.+++
T Consensus 161 ~~~k 164 (164)
T 1r8s_A 161 RNQK 164 (164)
T ss_dssp ----
T ss_pred hhcC
Confidence 7763
No 8
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=100.00 E-value=1.7e-36 Score=202.94 Aligned_cols=167 Identities=47% Similarity=0.866 Sum_probs=149.9
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEECCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEEC
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDS 94 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~ 94 (181)
.+.++|+++|++|+|||||+++++++.+..+.+|.+.....+.+....+.+|||||++.+...+..+++.+|++++|+|+
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~ 84 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDS 84 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEEEEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEET
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCcCCcCccceEEEEECCEEEEEEECCCChhhhHHHHHHhccCCEEEEEEEC
Confidence 45799999999999999999999999888888999988888888999999999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHHHHHH
Q 030233 95 SDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLS 174 (181)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~ 174 (181)
++++++.....++..++......+.|+++|+||+|+.+....+++...+....+...+++++++||++|+|++++|+++.
T Consensus 85 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 164 (171)
T 1upt_A 85 CDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLV 164 (171)
T ss_dssp TCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchhccCCceEEEECcCCCCcCHHHHHHHHH
Confidence 99999999999999888765556899999999999988777777877776555566778999999999999999999999
Q ss_pred hhhhccC
Q 030233 175 NNISVKN 181 (181)
Q Consensus 175 ~~~~~~~ 181 (181)
+.+.+++
T Consensus 165 ~~i~~~q 171 (171)
T 1upt_A 165 ETLKSRQ 171 (171)
T ss_dssp HHHHTCC
T ss_pred HHHhhcC
Confidence 9988763
No 9
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=100.00 E-value=9.7e-39 Score=221.19 Aligned_cols=162 Identities=19% Similarity=0.321 Sum_probs=122.9
Q ss_pred hCCCCccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEEE--EEE--CCeEEEEEEcCCChhhHHHHHhhccCCC
Q 030233 12 FFPQCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVEA--VEY--KNKSFCVWDVGGQNKIRALWRHYFRDTL 86 (181)
Q Consensus 12 ~~~~~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~~--~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~d 86 (181)
..|++++||+++|++|||||||+++++.+.+. .+.||++.+... +.. ....+.+|||+|+++|..+++.+++.++
T Consensus 8 ~~P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~ 87 (216)
T 4dkx_A 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSA 87 (216)
T ss_dssp -----CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCS
T ss_pred CCCCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhcccc
Confidence 34778999999999999999999999998864 457888866544 333 4478899999999999999999999999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhhCccccCCccEEEEEeeccCCC
Q 030233 87 GLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV--MPTAEVADKLELYSLGQRRWSIQSCSAISGQ 164 (181)
Q Consensus 87 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (181)
++++|||+++++||..+..|+..+..... +++|+++|+||+|+.+. .+.++..... ...++.|++|||++|+
T Consensus 88 ~~ilv~di~~~~Sf~~i~~~~~~i~~~~~-~~~piilVgNK~Dl~~~r~V~~~e~~~~a-----~~~~~~~~e~SAktg~ 161 (216)
T 4dkx_A 88 AAVVVYDITNVNSFQQTTKWIDDVRTERG-SDVIIMLVGNKTDLADKRQVSIEEGERKA-----KELNVMFIETSAKAGY 161 (216)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHT-TSSEEEEEEECTTCGGGCCSCHHHHHHHH-----HHHTCEEEEEBTTTTB
T ss_pred EEEEEeecchhHHHHHHHHHHHHHHHhcC-CCCeEEEEeeccchHhcCcccHHHHhhHH-----HHhCCeeEEEeCCCCc
Confidence 99999999999999999999998866432 67999999999998653 3334333322 2345689999999999
Q ss_pred CHHHHHHHHHhhhhc
Q 030233 165 GLYEGLDWLSNNISV 179 (181)
Q Consensus 165 ~i~~l~~~i~~~~~~ 179 (181)
||+++|+.|++.+.+
T Consensus 162 nV~e~F~~i~~~i~~ 176 (216)
T 4dkx_A 162 NVKQLFRRVAAALPG 176 (216)
T ss_dssp SHHHHHHHHHHHC--
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999988754
No 10
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=100.00 E-value=2.9e-36 Score=205.55 Aligned_cols=165 Identities=36% Similarity=0.606 Sum_probs=141.6
Q ss_pred CCCCccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEECCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEE
Q 030233 13 FPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVV 92 (181)
Q Consensus 13 ~~~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (181)
+..+.++|+++|++|+|||||+++++++.+..+.+|.+.+...+.+.+..+.+|||||++.++..+..+++.+|++++|+
T Consensus 19 ~~~~~~ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 98 (190)
T 1m2o_B 19 LWNKHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLV 98 (190)
T ss_dssp -----CEEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETTEEEEEEECCCSGGGTTSGGGGCTTCCEEEEEE
T ss_pred ccCCccEEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEE
Confidence 45677899999999999999999999998888888999888888889999999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccc-------cCCccEEEEEeeccCCCC
Q 030233 93 DSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYS-------LGQRRWSIQSCSAISGQG 165 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~Sa~~~~~ 165 (181)
|++++++++....|+..++......+.|+++|+||+|+.+..+.+++.+...... .....+++++|||++|+|
T Consensus 99 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g 178 (190)
T 1m2o_B 99 DAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNG 178 (190)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBTTTTBS
T ss_pred ECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCCCHHHHHHHhCCccccccccccccceEEEEEeECCcCCC
Confidence 9999999999999999987765456899999999999988667777777665432 233567899999999999
Q ss_pred HHHHHHHHHhhh
Q 030233 166 LYEGLDWLSNNI 177 (181)
Q Consensus 166 i~~l~~~i~~~~ 177 (181)
++++|++|.+.+
T Consensus 179 i~~l~~~l~~~l 190 (190)
T 1m2o_B 179 YLEAFQWLSQYI 190 (190)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHhhC
Confidence 999999998754
No 11
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=100.00 E-value=8.6e-36 Score=202.84 Aligned_cols=168 Identities=31% Similarity=0.597 Sum_probs=146.4
Q ss_pred CCCCccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEEEEEECCeEEEEEEcCCChhhHHHHHhhccCCCEEEEE
Q 030233 13 FPQCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFV 91 (181)
Q Consensus 13 ~~~~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v 91 (181)
..++.++|+++|++|+|||||+++++++.+. .+.+|.+.+...+......+.+|||||++.+...+..+++.+|++++|
T Consensus 18 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v 97 (188)
T 1zd9_A 18 GSKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYM 97 (188)
T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEE
T ss_pred CCCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHccCCEEEEE
Confidence 4456899999999999999999999988865 567888988888888999999999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHHH
Q 030233 92 VDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLD 171 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 171 (181)
+|+++++++.....|+..++......+.|+++|+||+|+.+..+.+++.+.+........+++++++||++|.|++++|+
T Consensus 98 ~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~ 177 (188)
T 1zd9_A 98 VDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQ 177 (188)
T ss_dssp EETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHHHHHhChhhhccCCeeEEEEECCCCCCHHHHHH
Confidence 99999999999999999887764446899999999999987767777777766555555678899999999999999999
Q ss_pred HHHhhhhcc
Q 030233 172 WLSNNISVK 180 (181)
Q Consensus 172 ~i~~~~~~~ 180 (181)
+|.+.+.++
T Consensus 178 ~l~~~~~~~ 186 (188)
T 1zd9_A 178 WLIQHSKSR 186 (188)
T ss_dssp HHHHTCC--
T ss_pred HHHHHHHhh
Confidence 999988765
No 12
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=100.00 E-value=4.1e-36 Score=206.02 Aligned_cols=165 Identities=30% Similarity=0.604 Sum_probs=135.3
Q ss_pred CCCCccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEECCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEE
Q 030233 13 FPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVV 92 (181)
Q Consensus 13 ~~~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (181)
+..+.++|+++|++|+|||||+++++++.+..+.+|.+.+...+.+.+..+.+|||||++.++..+..+++.+|++++|+
T Consensus 21 ~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 100 (198)
T 1f6b_A 21 LYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLV 100 (198)
T ss_dssp CTTCCEEEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTEEEEEEEECC----CCGGGGGGGGCSEEEEEE
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCEEEEEEECCCcHhhHHHHHHHHhcCCEEEEEE
Confidence 55678999999999999999999999988888888888888888888899999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccc---------c---CCccEEEEEeec
Q 030233 93 DSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYS---------L---GQRRWSIQSCSA 160 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~---------~---~~~~~~~~~~Sa 160 (181)
|+++++++.....|+..+++.....+.|+++|+||+|+.+..+.+++........ . ....+++++|||
T Consensus 101 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA 180 (198)
T 1f6b_A 101 DCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSV 180 (198)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBT
T ss_pred ECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccCCHHHHHHHhCcccccccccccccccccCceEEEEEEEC
Confidence 9999999999999999988765556899999999999987667777776654321 1 125678999999
Q ss_pred cCCCCHHHHHHHHHhhh
Q 030233 161 ISGQGLYEGLDWLSNNI 177 (181)
Q Consensus 161 ~~~~~i~~l~~~i~~~~ 177 (181)
++|+|++++|++|.+.+
T Consensus 181 ~~g~gv~~l~~~l~~~l 197 (198)
T 1f6b_A 181 LKRQGYGEGFRWMAQYI 197 (198)
T ss_dssp TTTBSHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHHHHhc
Confidence 99999999999998875
No 13
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=100.00 E-value=6.9e-36 Score=202.12 Aligned_cols=164 Identities=45% Similarity=0.837 Sum_probs=144.2
Q ss_pred CCCccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEECCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEE
Q 030233 14 PQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVD 93 (181)
Q Consensus 14 ~~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (181)
+.+.++|+++|++|+|||||+++++++.+..+.+|.+.+...+.+.+..+.+|||||++.+...+..+++.+|++++|+|
T Consensus 18 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D 97 (181)
T 2h17_A 18 GSQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVD 97 (181)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSSSSCEEEEETTEEEEEEEESSSGGGTCGGGGGGTTCCEEEEEEE
T ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCceeeEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence 45679999999999999999999999998888889998888888899999999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHHHHH
Q 030233 94 SSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWL 173 (181)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i 173 (181)
+++++++.....|+..++......+.|+++|+||+|+.+....+++.+.+........+++++++||++|+|++++|++|
T Consensus 98 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 177 (181)
T 2h17_A 98 STDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWM 177 (181)
T ss_dssp TTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHH
Confidence 99999999999999988776444689999999999998877778888777655555667899999999999999999999
Q ss_pred Hhhh
Q 030233 174 SNNI 177 (181)
Q Consensus 174 ~~~~ 177 (181)
.+.+
T Consensus 178 ~~~l 181 (181)
T 2h17_A 178 MSRL 181 (181)
T ss_dssp HTC-
T ss_pred HhhC
Confidence 8753
No 14
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=100.00 E-value=1.3e-35 Score=203.42 Aligned_cols=168 Identities=35% Similarity=0.651 Sum_probs=143.4
Q ss_pred CCCCccEEEEEcCCCCChHHHHHhhhcCCccc--ccCccceeEEEEEECCeEEEEEEcCCChhhHHHHHhhccCCCEEEE
Q 030233 13 FPQCRIKLLMVGLDASGKTTILYKMKLGEIVT--TTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTF 90 (181)
Q Consensus 13 ~~~~~~~i~~~G~~~~GKssl~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~ 90 (181)
.+...++|+++|++|+|||||+++++++.+.. +.+|.+.....+......+.+|||||++.+...+..+++.+|++|+
T Consensus 13 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 92 (199)
T 4bas_A 13 QSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVETFEKGRVAFTVFDMGGAKKFRGLWETYYDNIDAVIF 92 (199)
T ss_dssp ---CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEE
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHhcCCEEEE
Confidence 34567899999999999999999999998654 4889998888888899999999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHcCCCC-------CCCeEEEEEeCCCCCCCCCHHHHHhhhCcccc-CCccEEEEEeeccC
Q 030233 91 VVDSSDRERISEARNELHQILSDNEL-------SNAALLVFANKQDLPNVMPTAEVADKLELYSL-GQRRWSIQSCSAIS 162 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~-------~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~ 162 (181)
|||+++++++.....|+..++..... .+.|+++|+||+|+......+++...+..... ...+++++++||++
T Consensus 93 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 172 (199)
T 4bas_A 93 VVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFVIFASNGLK 172 (199)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCEEEEECBTTT
T ss_pred EEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCeeEEEEeeCCC
Confidence 99999999999999999988765221 37999999999999887777888777765433 45678999999999
Q ss_pred CCCHHHHHHHHHhhhhcc
Q 030233 163 GQGLYEGLDWLSNNISVK 180 (181)
Q Consensus 163 ~~~i~~l~~~i~~~~~~~ 180 (181)
|+|++++|++|.+.+.++
T Consensus 173 g~gv~~l~~~l~~~~~~~ 190 (199)
T 4bas_A 173 GTGVHEGFSWLQETASRQ 190 (199)
T ss_dssp TBTHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHH
Confidence 999999999999987653
No 15
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=100.00 E-value=4.9e-35 Score=199.33 Aligned_cols=167 Identities=38% Similarity=0.701 Sum_probs=142.0
Q ss_pred CCCccEEEEEcCCCCChHHHHHhhhcCC--cccccCccceeEEEEEECCeEEEEEEcCCChhhHHHHHhhccCCCEEEEE
Q 030233 14 PQCRIKLLMVGLDASGKTTILYKMKLGE--IVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFV 91 (181)
Q Consensus 14 ~~~~~~i~~~G~~~~GKssl~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v 91 (181)
..+.++|+++|++|+|||||++++++.. ...+.+|.+.....+.+.+..+.+|||||++.+...+..+++.+|++++|
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v 97 (190)
T 2h57_A 18 GSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFV 97 (190)
T ss_dssp ---CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEEEEEEECSSCEEEEEEECCSTTTGGGGGGGGGGCSEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccceeEEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEE
Confidence 4567999999999999999999999887 45567888888888888889999999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHcCCCC--CCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCCCHHHH
Q 030233 92 VDSSDRERISEARNELHQILSDNEL--SNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEG 169 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 169 (181)
+|+++++++.....|+..++..... .+.|+++|+||+|+.+....+++............+++++++||++|+|++++
T Consensus 98 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 177 (190)
T 2h57_A 98 IDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEG 177 (190)
T ss_dssp EETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhChhhccCCceEEEEccCCCCcCHHHH
Confidence 9999999999999999888776443 57999999999999887777777776654444445789999999999999999
Q ss_pred HHHHHhhhhcc
Q 030233 170 LDWLSNNISVK 180 (181)
Q Consensus 170 ~~~i~~~~~~~ 180 (181)
|++|.+.+.+.
T Consensus 178 ~~~l~~~i~~~ 188 (190)
T 2h57_A 178 VDWLQDQIQTV 188 (190)
T ss_dssp HHHHHHHC---
T ss_pred HHHHHHHHHHh
Confidence 99999988654
No 16
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=100.00 E-value=8.6e-35 Score=213.23 Aligned_cols=168 Identities=68% Similarity=1.101 Sum_probs=146.9
Q ss_pred CCCccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEECCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEE
Q 030233 14 PQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVD 93 (181)
Q Consensus 14 ~~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (181)
..+.++|+++|++|+|||||++++.++.+....||.+.....+...+..+.+|||||++.+...+..+++.+|++|+|||
T Consensus 162 ~~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~pT~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D 241 (329)
T 3o47_A 162 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 241 (329)
T ss_dssp -CCSEEEEEEESTTSSHHHHHHHTCSSCCEEEEEETTEEEEEEEETTEEEEEEECC-----CCSHHHHHTTEEEEEEEEE
T ss_pred ccCcceEEEECCCCccHHHHHHHHhCCCCCCcccccceEEEEEecCcEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence 34668999999999999999999999988777789998888888999999999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHHHHH
Q 030233 94 SSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWL 173 (181)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i 173 (181)
+++++++.....++..++......++|+++|+||+|+.+....+++...+........+++++++||++|+|++++|++|
T Consensus 242 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~el~~~l 321 (329)
T 3o47_A 242 SNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWL 321 (329)
T ss_dssp TTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHHHHHHhchhhhhcCCCEEEEEECCCCcCHHHHHHHH
Confidence 99999999999999998887666789999999999999888888888888777667788899999999999999999999
Q ss_pred HhhhhccC
Q 030233 174 SNNISVKN 181 (181)
Q Consensus 174 ~~~~~~~~ 181 (181)
.+.+.+++
T Consensus 322 ~~~l~~~k 329 (329)
T 3o47_A 322 SNQLRNQK 329 (329)
T ss_dssp HHHHTC--
T ss_pred HHHHHhcC
Confidence 99988764
No 17
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=100.00 E-value=2.5e-34 Score=191.62 Aligned_cols=159 Identities=16% Similarity=0.136 Sum_probs=107.3
Q ss_pred ccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEE-EEE--CCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEE
Q 030233 17 RIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEA-VEY--KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVD 93 (181)
Q Consensus 17 ~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (181)
.++|+++|++|+|||||++++++.......++.+.+... +.. ....+.+||+||++.+...+..+++.+|++++|||
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 81 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYS 81 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC----------CEEEEEEEETTEEEEEEEEECC---------------CCEEEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccceEEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEEE
Confidence 589999999999999999999988776666666655542 333 44678999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHHH
Q 030233 94 SSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVM--PTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLD 171 (181)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 171 (181)
++++++++....|+..+.......+.|+++|+||+|+.+.. ..++..... ...+++++++||++|+|++++|+
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l~~ 156 (166)
T 3q72_A 82 VTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACA-----VVFDCKFIETSAALHHNVQALFE 156 (166)
T ss_dssp TTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHH-----HHTTCEEEECBGGGTBSHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHH-----HHhCCcEEEeccCCCCCHHHHHH
Confidence 99999999999999998876555789999999999997532 233322221 22345899999999999999999
Q ss_pred HHHhhhhcc
Q 030233 172 WLSNNISVK 180 (181)
Q Consensus 172 ~i~~~~~~~ 180 (181)
++.+.+.++
T Consensus 157 ~l~~~~~~~ 165 (166)
T 3q72_A 157 GVVRQIRLR 165 (166)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 999988765
No 18
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=100.00 E-value=5.8e-33 Score=213.98 Aligned_cols=167 Identities=59% Similarity=1.031 Sum_probs=150.9
Q ss_pred CCCccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEECCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEE
Q 030233 14 PQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVD 93 (181)
Q Consensus 14 ~~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (181)
.++.++|+++|.+|+|||||++++.++.+....+|.+.+...+.+.+..+.+|||||++.+...+..+++.+|++|+|||
T Consensus 319 ~~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~~~~T~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~V~D 398 (497)
T 3lvq_E 319 SNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVD 398 (497)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEEEEESSSCEEEEEEECCCGGGSGGGGGGGTTCCEEEEEEE
T ss_pred cccceeEEEEcCCCCCHHHHHHHHhcCCCCCcCCccceeEEEEEeCCEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEE
Confidence 34679999999999999999999999998888899999999999999999999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHHHHH
Q 030233 94 SSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWL 173 (181)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i 173 (181)
+++++++.....|+..++......++|+++|+||+|+.+....+++...+.........++++++||++|+|++++|++|
T Consensus 399 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l 478 (497)
T 3lvq_E 399 CADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWL 478 (497)
T ss_dssp TTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCCCHHHHHHHTTCTTCCSSCEEEEECBTTTTBTHHHHHHHH
T ss_pred CcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCCCHHHHHHHhchhhhhcCCeEEEEEECCCCCCHHHHHHHH
Confidence 99999999999999999887655789999999999998877888888887766666678899999999999999999999
Q ss_pred Hhhhhcc
Q 030233 174 SNNISVK 180 (181)
Q Consensus 174 ~~~~~~~ 180 (181)
.+.+.++
T Consensus 479 ~~~~~~~ 485 (497)
T 3lvq_E 479 TSNYKSK 485 (497)
T ss_dssp HHHCC--
T ss_pred HHHHHhc
Confidence 9987654
No 19
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=1.3e-33 Score=188.56 Aligned_cols=159 Identities=21% Similarity=0.335 Sum_probs=127.1
Q ss_pred CccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEE--EEEEC--CeEEEEEEcCCChhhHHHHHhhccCCCEEEE
Q 030233 16 CRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVE--AVEYK--NKSFCVWDVGGQNKIRALWRHYFRDTLGLTF 90 (181)
Q Consensus 16 ~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~--~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~ 90 (181)
+.++|+++|++|+|||||+++++++.+. .+.++.+.+.. .+... ...+.+|||||++.+...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV 81 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence 4689999999999999999999988854 45677775543 34443 3589999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC-----CHHHHHhhhCccccCCccEEEEEeeccCCCC
Q 030233 91 VVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVM-----PTAEVADKLELYSLGQRRWSIQSCSAISGQG 165 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (181)
|+|++++.++.....|+..+.... ..+.|+++|+||+|+.... ..++..... ...+++++++||++|.|
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~g 155 (170)
T 1ek0_A 82 VYDVTKPQSFIKARHWVKELHEQA-SKDIIIALVGNKIDXLQEGGERKVAREEGEKLA-----EEKGLLFFETSAKTGEN 155 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHH-----HHHTCEEEECCTTTCTT
T ss_pred EEecCChHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCCccccccccCCCHHHHHHHH-----HHcCCEEEEEeCCCCCC
Confidence 999999999999999888876543 2579999999999986531 222222211 22345899999999999
Q ss_pred HHHHHHHHHhhhhcc
Q 030233 166 LYEGLDWLSNNISVK 180 (181)
Q Consensus 166 i~~l~~~i~~~~~~~ 180 (181)
++++|++|.+.+.++
T Consensus 156 i~~l~~~l~~~i~~k 170 (170)
T 1ek0_A 156 VNDVFLGIGEKIPLK 170 (170)
T ss_dssp HHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHHhhC
Confidence 999999999988653
No 20
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=100.00 E-value=1.9e-33 Score=188.74 Aligned_cols=160 Identities=14% Similarity=0.109 Sum_probs=117.1
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEE--EEEECC--eEEEEEEcCCChh--hHHHHHhhccCCCEE
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVE--AVEYKN--KSFCVWDVGGQNK--IRALWRHYFRDTLGL 88 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~~~i~d~~g~~~--~~~~~~~~~~~~d~i 88 (181)
++.++|+++|++|+|||||++++++..+....++.+.+.. .+.+.+ ..+.+|||||++. +......+++.+|++
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~ 81 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAY 81 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEE
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEE
Confidence 4578999999999999999999999887666666665543 344444 4789999999887 566778888999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhhCccccCCccEEEEEeeccCCCCH
Q 030233 89 TFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVM--PTAEVADKLELYSLGQRRWSIQSCSAISGQGL 166 (181)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 166 (181)
++|||+++++++.....|+..+.......+.|+++|+||+|+.+.. ..++..... ...+++++++||++|+|+
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~g~gi 156 (175)
T 2nzj_A 82 VIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACA-----VVFDCKFIETSATLQHNV 156 (175)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHH-----HHHTSEEEECBTTTTBSH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHH-----HHcCCeEEEEecCCCCCH
Confidence 9999999999999999998888765444689999999999997532 233322211 123457999999999999
Q ss_pred HHHHHHHHhhhhc
Q 030233 167 YEGLDWLSNNISV 179 (181)
Q Consensus 167 ~~l~~~i~~~~~~ 179 (181)
+++|++|.+.+.+
T Consensus 157 ~~l~~~l~~~~~~ 169 (175)
T 2nzj_A 157 AELFEGVVRQLRL 169 (175)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988754
No 21
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=100.00 E-value=4.3e-32 Score=184.02 Aligned_cols=160 Identities=15% Similarity=0.202 Sum_probs=124.9
Q ss_pred hCCCCccEEEEEcCCCCChHHHHHhhhcCCccc-ccCccceeEEEEEECC--eEEEEEEcCCChhhHHHHHhhccCCCEE
Q 030233 12 FFPQCRIKLLMVGLDASGKTTILYKMKLGEIVT-TTPTIGFNVEAVEYKN--KSFCVWDVGGQNKIRALWRHYFRDTLGL 88 (181)
Q Consensus 12 ~~~~~~~~i~~~G~~~~GKssl~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~d~i 88 (181)
..+++.++|+++|++|+|||||+++++++.+.. +.+|.+.....+.+.+ ..+.+|||+|++.+. +++.+|++
T Consensus 15 ~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~ 89 (184)
T 3ihw_A 15 YFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAV 89 (184)
T ss_dssp -CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSEE
T ss_pred CCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEEEEEEEEECCCChhhh-----eecCCCEE
Confidence 345678999999999999999999999988654 4555444444555555 677889999998877 67789999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC----CCCHHHHHhhhCccccCCccEEEEEeeccCCC
Q 030233 89 TFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPN----VMPTAEVADKLELYSLGQRRWSIQSCSAISGQ 164 (181)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (181)
++|||++++++++.+..|+..+.......+.|+++|+||+|+.. ....++....... ...+.|+++||++|+
T Consensus 90 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~----~~~~~~~e~Sa~~~~ 165 (184)
T 3ihw_A 90 VFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTD----LKRCTYYETCATYGL 165 (184)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHH----TTTCEEEEEBTTTTB
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHH----cCCCeEEEecCCCCC
Confidence 99999999999999999999887765446799999999999842 2333333333211 123589999999999
Q ss_pred CHHHHHHHHHhhhhcc
Q 030233 165 GLYEGLDWLSNNISVK 180 (181)
Q Consensus 165 ~i~~l~~~i~~~~~~~ 180 (181)
|++++|+++.+.+.++
T Consensus 166 gv~~lf~~l~~~i~~~ 181 (184)
T 3ihw_A 166 NVERVFQDVAQKVVAL 181 (184)
T ss_dssp THHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999999987654
No 22
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=100.00 E-value=2.6e-32 Score=184.70 Aligned_cols=162 Identities=20% Similarity=0.206 Sum_probs=128.1
Q ss_pred CCCccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEE-EEEECC--eEEEEEEcCCChhhHHHHHhhccCCCEEE
Q 030233 14 PQCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVE-AVEYKN--KSFCVWDVGGQNKIRALWRHYFRDTLGLT 89 (181)
Q Consensus 14 ~~~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~-~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~d~ii 89 (181)
+.+.++|+++|++|+|||||+++++++.+. .+.++.+.... .....+ ..+.+|||||++.+...+..+++.+|+++
T Consensus 15 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 94 (183)
T 3kkq_A 15 NLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFL 94 (183)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence 346799999999999999999999988754 44566654432 233344 45677999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC--CCCHHHHHhhhCccccCCccEEEEEeecc-CCCCH
Q 030233 90 FVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPN--VMPTAEVADKLELYSLGQRRWSIQSCSAI-SGQGL 166 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~-~~~~i 166 (181)
+|||+++++++..+..|+..+.......+.|+++|+||+|+.+ ....++...... ..+++++++||+ +|+|+
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~~~~~v 169 (183)
T 3kkq_A 95 IVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMAT-----KYNIPYIETSAKDPPLNV 169 (183)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHH-----HHTCCEEEEBCSSSCBSH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHH-----HhCCeEEEeccCCCCCCH
Confidence 9999999999999999988886644446899999999999865 233333333221 223579999999 99999
Q ss_pred HHHHHHHHhhhhcc
Q 030233 167 YEGLDWLSNNISVK 180 (181)
Q Consensus 167 ~~l~~~i~~~~~~~ 180 (181)
+++|++|.+.+.++
T Consensus 170 ~~l~~~l~~~i~~q 183 (183)
T 3kkq_A 170 DKTFHDLVRVIRQQ 183 (183)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhC
Confidence 99999999988764
No 23
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=7.8e-32 Score=183.83 Aligned_cols=160 Identities=19% Similarity=0.299 Sum_probs=129.9
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEEEEEE----CCeEEEEEEcCCChhhHHHHHhhccCCCEEE
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVEAVEY----KNKSFCVWDVGGQNKIRALWRHYFRDTLGLT 89 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~~~~~----~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii 89 (181)
++.++|+++|++|+|||||+++++++.+. .+.++.+.+...... ....+.+|||||++.+...+..+++.+|+++
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 100 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAV 100 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEEE
Confidence 46799999999999999999999998854 567788766554333 4578999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC--CCCHHHHHhhhCccccCCccEEEEEeeccCCCCHH
Q 030233 90 FVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPN--VMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLY 167 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (181)
+|+|+++++++..+..|+..+.... ..+.|+++|+||+|+.+ ....++..+.. ...+++++++||++|.|++
T Consensus 101 lV~d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~ 174 (192)
T 2fg5_A 101 IVYDITKQDSFYTLKKWVKELKEHG-PENIVMAIAGNKCDLSDIREVPLKDAKEYA-----ESIGAIVVETSAKNAINIE 174 (192)
T ss_dssp EEEETTCTHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHH-----HTTTCEEEECBTTTTBSHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECcccccccccCHHHHHHHH-----HHcCCEEEEEeCCCCcCHH
Confidence 9999999999999988888775542 35799999999999864 23344444433 2234689999999999999
Q ss_pred HHHHHHHhhhhcc
Q 030233 168 EGLDWLSNNISVK 180 (181)
Q Consensus 168 ~l~~~i~~~~~~~ 180 (181)
++|++|.+.+.+.
T Consensus 175 ~l~~~l~~~i~~~ 187 (192)
T 2fg5_A 175 ELFQGISRQIPPL 187 (192)
T ss_dssp HHHHHHHHTCC--
T ss_pred HHHHHHHHHHHhh
Confidence 9999999988654
No 24
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=100.00 E-value=6e-32 Score=180.47 Aligned_cols=160 Identities=22% Similarity=0.350 Sum_probs=128.1
Q ss_pred CCCccEEEEEcCCCCChHHHHHhhhcCCccc-ccCccceeEEE--EEEC--CeEEEEEEcCCChhhHHHHHhhccCCCEE
Q 030233 14 PQCRIKLLMVGLDASGKTTILYKMKLGEIVT-TTPTIGFNVEA--VEYK--NKSFCVWDVGGQNKIRALWRHYFRDTLGL 88 (181)
Q Consensus 14 ~~~~~~i~~~G~~~~GKssl~~~~~~~~~~~-~~~~~~~~~~~--~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~d~i 88 (181)
+++.++|+++|++|+|||||+++++++.+.. +.++.+.+... +... ...+.+||+||++.+...+..+++.+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1r2q_A 3 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAA 82 (170)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEE
Confidence 4567999999999999999999999887543 45666655433 3333 56899999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhhCccccCCccEEEEEeeccCCCCH
Q 030233 89 TFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV--MPTAEVADKLELYSLGQRRWSIQSCSAISGQGL 166 (181)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 166 (181)
++|+|+++++++.....|+..+.... .++.|+++|+||+|+.+. ...++..... ...+++++++||++|+|+
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~g~gi 156 (170)
T 1r2q_A 83 IVVYDITNEESFARAKNWVKELQRQA-SPNIVIALSGNKADLANKRAVDFQEAQSYA-----DDNSLLFMETSAKTSMNV 156 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHH-----HHTTCEEEECCTTTCTTH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCccccccCHHHHHHHH-----HHcCCeEEEEeCCCCCCH
Confidence 99999999999999998888876542 257999999999998642 2233333322 224468999999999999
Q ss_pred HHHHHHHHhhhhc
Q 030233 167 YEGLDWLSNNISV 179 (181)
Q Consensus 167 ~~l~~~i~~~~~~ 179 (181)
+++|++|.+.+.+
T Consensus 157 ~~l~~~i~~~~~~ 169 (170)
T 1r2q_A 157 NEIFMAIAKKLPK 169 (170)
T ss_dssp HHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHhh
Confidence 9999999998764
No 25
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=100.00 E-value=2.2e-32 Score=182.20 Aligned_cols=160 Identities=19% Similarity=0.247 Sum_probs=126.4
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEEE-EEE--CCeEEEEEEcCCChhhHHHHHhhccCCCEEEE
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVEA-VEY--KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTF 90 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~~-~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~ 90 (181)
++.++|+++|++|+|||||+++++++.+. .+.+|.+..... +.. ....+.+|||||++.+...+..+++.+|++++
T Consensus 1 m~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 80 (167)
T 1c1y_A 1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL 80 (167)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 35789999999999999999999988754 455666654432 222 35689999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhhCccccCCccEEEEEeeccCCCCHHH
Q 030233 91 VVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVM--PTAEVADKLELYSLGQRRWSIQSCSAISGQGLYE 168 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (181)
|+|++++++++....|+..+.......+.|+++|+||+|+.+.. ..++...... ...+.+++++||++|.|+++
T Consensus 81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gi~~ 156 (167)
T 1c1y_A 81 VYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLAR----QWCNCAFLESSAKSKINVNE 156 (167)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHH----HTTSCEEEECBTTTTBSHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHH----HccCCcEEEecCCCCCCHHH
Confidence 99999999999988888877664334689999999999996532 2333333221 11256899999999999999
Q ss_pred HHHHHHhhhh
Q 030233 169 GLDWLSNNIS 178 (181)
Q Consensus 169 l~~~i~~~~~ 178 (181)
+|++|.+.+.
T Consensus 157 l~~~l~~~i~ 166 (167)
T 1c1y_A 157 IFYDLVRQIN 166 (167)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 9999998774
No 26
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=100.00 E-value=9.1e-32 Score=184.80 Aligned_cols=160 Identities=23% Similarity=0.365 Sum_probs=123.9
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhcCCcc-cccCcccee--EEEEEECC--eEEEEEEcCCChhhHHHHHhhccCCCEEE
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFN--VEAVEYKN--KSFCVWDVGGQNKIRALWRHYFRDTLGLT 89 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~--~~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~d~ii 89 (181)
.+.++|+++|++|+|||||+++++++.+. .+.+|.+.+ ...+.+.+ ..+.+|||||++.+...+..+++.+|+++
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 106 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAI 106 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEE
Confidence 34689999999999999999999988864 455666644 34455554 68999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC--CCCHHHHHhhhCccccCCccE-EEEEeeccCCCCH
Q 030233 90 FVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPN--VMPTAEVADKLELYSLGQRRW-SIQSCSAISGQGL 166 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i 166 (181)
+|||+++++++..+..|+..+.... ..+.|+++|+||+|+.+ ....++...... ..++ +++++||++|+|+
T Consensus 107 lv~D~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~~SA~~g~gi 180 (201)
T 2hup_A 107 LAYDITKRSSFLSVPHWIEDVRKYA-GSNIVQLLIGNKSDLSELREVSLAEAQSLAE-----HYDILCAIETSAKDSSNV 180 (201)
T ss_dssp EEEETTBHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHH-----HTTCSEEEECBTTTTBSH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCccccccccCHHHHHHHHH-----HcCCCEEEEEeCCCCCCH
Confidence 9999999999999998888876543 35799999999999965 233444443321 2234 7999999999999
Q ss_pred HHHHHHHHhhhhcc
Q 030233 167 YEGLDWLSNNISVK 180 (181)
Q Consensus 167 ~~l~~~i~~~~~~~ 180 (181)
+++|++|.+.+.++
T Consensus 181 ~~l~~~l~~~i~~~ 194 (201)
T 2hup_A 181 EEAFLRVATELIMR 194 (201)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999987654
No 27
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.6e-33 Score=192.41 Aligned_cols=165 Identities=15% Similarity=0.126 Sum_probs=125.4
Q ss_pred hhCCCCccEEEEEcCCCCChHHHHHhhhcCCccc-ccCccceeEEEE---EECCeEEEEEEcCCChhhHHHHHhhccCCC
Q 030233 11 RFFPQCRIKLLMVGLDASGKTTILYKMKLGEIVT-TTPTIGFNVEAV---EYKNKSFCVWDVGGQNKIRALWRHYFRDTL 86 (181)
Q Consensus 11 ~~~~~~~~~i~~~G~~~~GKssl~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d 86 (181)
.+...+.++|+++|++|+|||||+++++++.+.. +.+|.+...... ......+.+|||||++.+...+..+++.+|
T Consensus 18 ~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 97 (201)
T 3oes_A 18 GMPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVH 97 (201)
T ss_dssp -----CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCC
T ss_pred CCCCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCC
Confidence 3444678999999999999999999999988543 456666444222 225678999999999999999999999999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhhCccccCCccEEEEEeeccCCC
Q 030233 87 GLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVM--PTAEVADKLELYSLGQRRWSIQSCSAISGQ 164 (181)
Q Consensus 87 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (181)
++++|||+++++++..+..|+..+.......++|+++|+||+|+.+.. ..++..... ...+++++++||++|.
T Consensus 98 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~ 172 (201)
T 3oes_A 98 GYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLA-----ESWGATFMESSARENQ 172 (201)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHH-----HHHTCEEEECCTTCHH
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHH-----HHhCCeEEEEeCCCCC
Confidence 999999999999999999999998876555689999999999986432 223322222 2234589999999999
Q ss_pred CHHHHHHHHHhhhhcc
Q 030233 165 GLYEGLDWLSNNISVK 180 (181)
Q Consensus 165 ~i~~l~~~i~~~~~~~ 180 (181)
|++++|++|.+.+.++
T Consensus 173 ~v~~l~~~l~~~i~~~ 188 (201)
T 3oes_A 173 LTQGIFTKVIQEIARV 188 (201)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHhh
Confidence 9999999999987654
No 28
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=100.00 E-value=1.5e-31 Score=180.54 Aligned_cols=162 Identities=17% Similarity=0.282 Sum_probs=127.5
Q ss_pred CCCCccEEEEEcCCCCChHHHHHhhhcCCccc-ccCccceeEE--EEEEC--CeEEEEEEcCCChhhHHHHHhhccCCCE
Q 030233 13 FPQCRIKLLMVGLDASGKTTILYKMKLGEIVT-TTPTIGFNVE--AVEYK--NKSFCVWDVGGQNKIRALWRHYFRDTLG 87 (181)
Q Consensus 13 ~~~~~~~i~~~G~~~~GKssl~~~~~~~~~~~-~~~~~~~~~~--~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~d~ 87 (181)
.++..++|+++|++|+|||||++++++..+.. ..++.+.+.. .+... ...+.+|||||++.+...+..+++.+|+
T Consensus 8 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 87 (181)
T 2efe_B 8 NKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 87 (181)
T ss_dssp --CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSE
T ss_pred CCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCE
Confidence 34567999999999999999999999887544 3456664443 34443 4689999999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhhCccccCCccEEEEEeeccCCCC
Q 030233 88 LTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVM--PTAEVADKLELYSLGQRRWSIQSCSAISGQG 165 (181)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (181)
+++|+|++++.++.....|+..+.... .++.|+++|+||+|+.+.. ..++..... ...+++++++||++|+|
T Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~g~g 161 (181)
T 2efe_B 88 AIIVFDVTNQASFERAKKWVQELQAQG-NPNMVMALAGNKSDLLDARKVTAEDAQTYA-----QENGLFFMETSAKTATN 161 (181)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHH-----HHTTCEEEECCSSSCTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCcccccccCCHHHHHHHH-----HHcCCEEEEEECCCCCC
Confidence 999999999999999999988876643 2589999999999996532 333443332 12345799999999999
Q ss_pred HHHHHHHHHhhhhcc
Q 030233 166 LYEGLDWLSNNISVK 180 (181)
Q Consensus 166 i~~l~~~i~~~~~~~ 180 (181)
++++|++|.+.+.++
T Consensus 162 i~~l~~~l~~~~~~~ 176 (181)
T 2efe_B 162 VKEIFYEIARRLPRV 176 (181)
T ss_dssp HHHHHHHHHHTCC--
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999987654
No 29
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=100.00 E-value=5.7e-32 Score=180.19 Aligned_cols=161 Identities=23% Similarity=0.280 Sum_probs=125.9
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEE-EEEECC--eEEEEEEcCCChhhHHHHHhhccCCCEEEE
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVE-AVEYKN--KSFCVWDVGGQNKIRALWRHYFRDTLGLTF 90 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~-~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~ 90 (181)
++.++|+++|++|+|||||+++++++.+. .+.++.+.... .+...+ ..+.+||+||++.+...+..+++.+|++++
T Consensus 2 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (168)
T 1u8z_A 2 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC 81 (168)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEE
Confidence 45789999999999999999999988754 34555554443 234443 589999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhhCccccCCccEEEEEeeccCCCCHHH
Q 030233 91 VVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV--MPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYE 168 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (181)
|+|+++++++.....|+..+.......+.|+++|+||+|+.+. ...++..... ...+++++++||++|.|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~ 156 (168)
T 1u8z_A 82 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRA-----DQWNVNYVETSAKTRANVDK 156 (168)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHH-----HHHTCEEEECCTTTCTTHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHH-----HHcCCeEEEeCCCCCCCHHH
Confidence 9999999999999998888876544457999999999998652 3333333332 22345799999999999999
Q ss_pred HHHHHHhhhhcc
Q 030233 169 GLDWLSNNISVK 180 (181)
Q Consensus 169 l~~~i~~~~~~~ 180 (181)
+|+++.+.+.++
T Consensus 157 l~~~l~~~i~~~ 168 (168)
T 1u8z_A 157 VFFDLMREIRAR 168 (168)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHHhC
Confidence 999999988653
No 30
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=100.00 E-value=2.7e-32 Score=184.24 Aligned_cols=161 Identities=15% Similarity=0.144 Sum_probs=127.2
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhcCCc-ccccCccceeEE-EEEECC--eEEEEEEcCCChhhHHHHHhhccCCCEEEE
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKLGEI-VTTTPTIGFNVE-AVEYKN--KSFCVWDVGGQNKIRALWRHYFRDTLGLTF 90 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~-~~~~~~~~~~~~-~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~ 90 (181)
.+.++|+++|++|+|||||+++++++.+ ..+.++.+.... .+...+ ..+.+|||||++.+...+..+++.+|++++
T Consensus 4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~ 83 (181)
T 3t5g_A 4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYIL 83 (181)
T ss_dssp EEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEEE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEEE
Confidence 4679999999999999999999997774 445667665543 233444 678999999999998888899999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhhCccccCCccEEEEEeeccCCCCHHH
Q 030233 91 VVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV--MPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYE 168 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (181)
|+|++++++++.+..|+..+.......+.|+++|+||+|+.+. ...++..... ...+++++++||++|+|+++
T Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~ 158 (181)
T 3t5g_A 84 VYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALA-----ESWNAAFLESSAKENQTAVD 158 (181)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHH-----HHTTCEEEECCTTSHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHH-----HHhCCcEEEEecCCCCCHHH
Confidence 9999999999999999988876555568999999999998643 2333333322 22345799999999999999
Q ss_pred HHHHHHhhhhcc
Q 030233 169 GLDWLSNNISVK 180 (181)
Q Consensus 169 l~~~i~~~~~~~ 180 (181)
+|+++.+.+.++
T Consensus 159 l~~~l~~~~~~~ 170 (181)
T 3t5g_A 159 VFRRIILEAEKM 170 (181)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHHHh
Confidence 999999988764
No 31
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=100.00 E-value=3.4e-32 Score=185.99 Aligned_cols=161 Identities=24% Similarity=0.319 Sum_probs=126.8
Q ss_pred CCCCccEEEEEcCCCCChHHHHHhhhcCCcccc-----------cCccceeEEEEEE-----CCeEEEEEEcCCChhhHH
Q 030233 13 FPQCRIKLLMVGLDASGKTTILYKMKLGEIVTT-----------TPTIGFNVEAVEY-----KNKSFCVWDVGGQNKIRA 76 (181)
Q Consensus 13 ~~~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~-----------~~~~~~~~~~~~~-----~~~~~~i~d~~g~~~~~~ 76 (181)
.+...++|+++|++|+|||||++.+.+.....+ .+|.+.+...... ....+.+|||||++.+..
T Consensus 10 ~~~~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~ 89 (198)
T 3t1o_A 10 NREINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNA 89 (198)
T ss_dssp TTEEEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSH
T ss_pred ccccccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHH
Confidence 345679999999999999999987776554432 3355444433221 346899999999999999
Q ss_pred HHHhhccCCCEEEEEEECC------CcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCC
Q 030233 77 LWRHYFRDTLGLTFVVDSS------DRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQ 150 (181)
Q Consensus 77 ~~~~~~~~~d~ii~v~d~~------~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~ 150 (181)
.+..+++.+|++++|||++ +.+++..+..|+..+. ....+.|+++|+||+|+.+....+++.+....
T Consensus 90 ~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~--~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~----- 162 (198)
T 3t1o_A 90 SRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYG--LTLDDVPIVIQVNKRDLPDALPVEMVRAVVDP----- 162 (198)
T ss_dssp HHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTT--CCTTSSCEEEEEECTTSTTCCCHHHHHHHHCT-----
T ss_pred HHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhc--cccCCCCEEEEEEchhcccccCHHHHHHHHHh-----
Confidence 9999999999999999999 5567777777777762 23368999999999999887777777766542
Q ss_pred ccE-EEEEeeccCCCCHHHHHHHHHhhhhcc
Q 030233 151 RRW-SIQSCSAISGQGLYEGLDWLSNNISVK 180 (181)
Q Consensus 151 ~~~-~~~~~Sa~~~~~i~~l~~~i~~~~~~~ 180 (181)
.++ +++++||++|+|++++|++|.+.+.++
T Consensus 163 ~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~ 193 (198)
T 3t1o_A 163 EGKFPVLEAVATEGKGVFETLKEVSRLVLAR 193 (198)
T ss_dssp TCCSCEEECBGGGTBTHHHHHHHHHHHHHHH
T ss_pred cCCceEEEEecCCCcCHHHHHHHHHHHHHHH
Confidence 344 799999999999999999999987653
No 32
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=100.00 E-value=1.7e-31 Score=179.87 Aligned_cols=158 Identities=13% Similarity=0.133 Sum_probs=121.0
Q ss_pred CCCCccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEE-EEEECC--eEEEEEEcCCChhhHHHHHhhccCCCEEE
Q 030233 13 FPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVE-AVEYKN--KSFCVWDVGGQNKIRALWRHYFRDTLGLT 89 (181)
Q Consensus 13 ~~~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~d~ii 89 (181)
..++.++|+++|++|+|||||+++++++.+..+.+|.+.... .+...+ ..+.+|||||++. ..+++.+|+++
T Consensus 3 ~~~~~~ki~~vG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~i 77 (178)
T 2iwr_A 3 RSIPELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVI 77 (178)
T ss_dssp CCCCEEEEEEECCGGGCHHHHHHHHHHSCCCCCSSCSSSEEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEE
Confidence 345789999999999999999999999987777787775533 344443 6789999999887 35677899999
Q ss_pred EEEECCCcccHHHHHHHHHHHHc--CCCCCCCeEEEEEeCCCCCC----CCCHHHHHhhhCccccCCccEEEEEeeccCC
Q 030233 90 FVVDSSDRERISEARNELHQILS--DNELSNAALLVFANKQDLPN----VMPTAEVADKLELYSLGQRRWSIQSCSAISG 163 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~--~~~~~~~piilv~nK~D~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (181)
+|||+++++++..+..|+..+.. ....++.|+++|+||+|+.+ ....++...... ...+++++++||++|
T Consensus 78 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~----~~~~~~~~~~Sa~~~ 153 (178)
T 2iwr_A 78 FVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXA----DMKRCSYYETXATYG 153 (178)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHH----HHSSEEEEEEBTTTT
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHH----hhcCCeEEEEecccc
Confidence 99999999999999886544422 22235799999999999842 233333333221 113568999999999
Q ss_pred CCHHHHHHHHHhhhhc
Q 030233 164 QGLYEGLDWLSNNISV 179 (181)
Q Consensus 164 ~~i~~l~~~i~~~~~~ 179 (181)
+|++++|+++.+.+.+
T Consensus 154 ~~i~~lf~~l~~~~~~ 169 (178)
T 2iwr_A 154 LNVDRVFQEVAQKVVT 169 (178)
T ss_dssp BTHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999988754
No 33
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=8.3e-32 Score=183.76 Aligned_cols=161 Identities=20% Similarity=0.331 Sum_probs=129.2
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEE--EEEEC--CeEEEEEEcCCChhhHHHHHhhccCCCEEE
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVE--AVEYK--NKSFCVWDVGGQNKIRALWRHYFRDTLGLT 89 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~--~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii 89 (181)
.+.++|+++|++|+|||||++++++..+. .+.++.+.+.. .+... ...+.+|||||++.+...+..+++.+|+++
T Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 92 (195)
T 1x3s_A 13 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVI 92 (195)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEE
Confidence 35689999999999999999999998854 45666665544 33343 468999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC-CHHHHHhhhCccccCCccEEEEEeeccCCCCHHH
Q 030233 90 FVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVM-PTAEVADKLELYSLGQRRWSIQSCSAISGQGLYE 168 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (181)
+|+|++++.++..+..|+..+.......+.|+++|+||+|+.+.. ..++..... ...+++++++||++|+|+++
T Consensus 93 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~ 167 (195)
T 1x3s_A 93 LVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFA-----RKHSMLFIEASAKTCDGVQC 167 (195)
T ss_dssp EEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHH-----HHTTCEEEECCTTTCTTHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHHH-----HHcCCEEEEecCCCCCCHHH
Confidence 999999999999999998888765444689999999999995432 233333322 22345799999999999999
Q ss_pred HHHHHHhhhhcc
Q 030233 169 GLDWLSNNISVK 180 (181)
Q Consensus 169 l~~~i~~~~~~~ 180 (181)
+|++|.+.+.+.
T Consensus 168 l~~~l~~~~~~~ 179 (195)
T 1x3s_A 168 AFEELVEKIIQT 179 (195)
T ss_dssp HHHHHHHHHHTS
T ss_pred HHHHHHHHHHhh
Confidence 999999987653
No 34
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.2e-31 Score=180.81 Aligned_cols=161 Identities=20% Similarity=0.357 Sum_probs=120.9
Q ss_pred CCCccEEEEEcCCCCChHHHHHhhhcCCcc--cccCccceeEEE--EEECC--eEEEEEEcCCChhhHHHHHhhccCCCE
Q 030233 14 PQCRIKLLMVGLDASGKTTILYKMKLGEIV--TTTPTIGFNVEA--VEYKN--KSFCVWDVGGQNKIRALWRHYFRDTLG 87 (181)
Q Consensus 14 ~~~~~~i~~~G~~~~GKssl~~~~~~~~~~--~~~~~~~~~~~~--~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~d~ 87 (181)
.++.++|+++|++|+|||||+++++++.+. .+.++.+.+... +...+ ..+.+|||||++.+...+..+++.+|+
T Consensus 7 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 86 (180)
T 2g6b_A 7 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHA 86 (180)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCE
Confidence 456799999999999999999999998864 456677665543 34444 589999999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhhCccccCCccEEEEEeeccCCCC
Q 030233 88 LTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVM--PTAEVADKLELYSLGQRRWSIQSCSAISGQG 165 (181)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (181)
+++|+|++++.++..+..|+..+..... .+.|+++|+||+|+.+.. ..++..... ...+++++++||++|.|
T Consensus 87 ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~g 160 (180)
T 2g6b_A 87 LLLLYDVTNKASFDNIQAWLTEIHEYAQ-HDVALMLLGNKVDSAHERVVKREDGEKLA-----KEYGLPFMETSAKTGLN 160 (180)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECCSTTSCCCSCHHHHHHHH-----HHHTCCEEECCTTTCTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCcEEEEEECcccCcccccCHHHHHHHH-----HHcCCeEEEEeCCCCCC
Confidence 9999999999999998888887765422 579999999999997532 233333222 12345799999999999
Q ss_pred HHHHHHHHHhhhhcc
Q 030233 166 LYEGLDWLSNNISVK 180 (181)
Q Consensus 166 i~~l~~~i~~~~~~~ 180 (181)
++++|+++.+.+.++
T Consensus 161 i~~l~~~l~~~~~~~ 175 (180)
T 2g6b_A 161 VDLAFTAIAKELKRR 175 (180)
T ss_dssp HHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999988654
No 35
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=100.00 E-value=1.7e-31 Score=181.97 Aligned_cols=160 Identities=24% Similarity=0.395 Sum_probs=129.1
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEE---EEEEC-----------CeEEEEEEcCCChhhHHHHH
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVE---AVEYK-----------NKSFCVWDVGGQNKIRALWR 79 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~---~~~~~-----------~~~~~i~d~~g~~~~~~~~~ 79 (181)
.+.++|+++|++|+|||||+++++++.+. ...+|.+.+.. .+... ...+.+|||||++.+...+.
T Consensus 9 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~ 88 (195)
T 3bc1_A 9 DYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLTT 88 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHHH
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHHH
Confidence 45799999999999999999999988753 45677776554 33333 46899999999999999999
Q ss_pred hhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhhCccccCCccEEEEE
Q 030233 80 HYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV--MPTAEVADKLELYSLGQRRWSIQS 157 (181)
Q Consensus 80 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 157 (181)
.+++.+|++++|+|++++.++..+..|+..+.......+.|+++|+||+|+.+. ...++...... ..++++++
T Consensus 89 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~ 163 (195)
T 3bc1_A 89 AFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAE-----KYGIPYFE 163 (195)
T ss_dssp HTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHH-----HHTCCEEE
T ss_pred HHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHH-----HcCCCEEE
Confidence 999999999999999999999999999888876544468999999999998652 23333333221 12347999
Q ss_pred eeccCCCCHHHHHHHHHhhhhc
Q 030233 158 CSAISGQGLYEGLDWLSNNISV 179 (181)
Q Consensus 158 ~Sa~~~~~i~~l~~~i~~~~~~ 179 (181)
+||++|.|++++|++|.+.+.+
T Consensus 164 ~Sa~~~~~v~~l~~~l~~~~~~ 185 (195)
T 3bc1_A 164 TSAANGTNISHAIEMLLDLIMK 185 (195)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999988754
No 36
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.98 E-value=1.6e-31 Score=178.51 Aligned_cols=159 Identities=16% Similarity=0.158 Sum_probs=115.8
Q ss_pred ccEEEEEcCCCCChHHHHHhhhcCCccc---ccCccceeEEEEEECC--eEEEEEEcCCChhhHH-HHHhhccCCCEEEE
Q 030233 17 RIKLLMVGLDASGKTTILYKMKLGEIVT---TTPTIGFNVEAVEYKN--KSFCVWDVGGQNKIRA-LWRHYFRDTLGLTF 90 (181)
Q Consensus 17 ~~~i~~~G~~~~GKssl~~~~~~~~~~~---~~~~~~~~~~~~~~~~--~~~~i~d~~g~~~~~~-~~~~~~~~~d~ii~ 90 (181)
.++|+++|++|+|||||++++++..... ..++.......+...+ ..+.+||+||++.+.. .+..+++.+|++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 4799999999999999999998766332 2223334444444544 6788999999998876 67777888999999
Q ss_pred EEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC--CCCHHHHHhhhCccccCCccEEEEEeeccCCCCHHH
Q 030233 91 VVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPN--VMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYE 168 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (181)
|||+++++++.....|+..+.......+.|+++|+||+|+.+ ....++..... ...+++++++||++|+|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~ 156 (169)
T 3q85_A 82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLA-----GTLSCKHIETSAALHHNTRE 156 (169)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHH-----HHTTCEEEECBTTTTBSHHH
T ss_pred EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHH-----HHcCCcEEEecCccCCCHHH
Confidence 999999999999999999887765445899999999999863 23333333322 22345899999999999999
Q ss_pred HHHHHHhhhhcc
Q 030233 169 GLDWLSNNISVK 180 (181)
Q Consensus 169 l~~~i~~~~~~~ 180 (181)
+|+++.+.+..+
T Consensus 157 l~~~l~~~i~~~ 168 (169)
T 3q85_A 157 LFEGAVRQIRLR 168 (169)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhc
Confidence 999999988765
No 37
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.98 E-value=9.8e-32 Score=180.93 Aligned_cols=162 Identities=19% Similarity=0.274 Sum_probs=126.8
Q ss_pred CCCccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccc--eeEEEEEECC---eEEEEEEcCCChhhHHHHHhhccCCCE
Q 030233 14 PQCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIG--FNVEAVEYKN---KSFCVWDVGGQNKIRALWRHYFRDTLG 87 (181)
Q Consensus 14 ~~~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~--~~~~~~~~~~---~~~~i~d~~g~~~~~~~~~~~~~~~d~ 87 (181)
+++.++|+++|++|+|||||+++++++.+. .+.+|.+ +....+.+.+ ..+.+|||||++.+...+..+++.+|+
T Consensus 3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 82 (178)
T 2hxs_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG 82 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence 456899999999999999999999988754 4456666 3344555654 799999999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHcCCC--CCCCeEEEEEeCCCCCCC--CCHHHHHhhhCccccCCccEEEEEeeccCC
Q 030233 88 LTFVVDSSDRERISEARNELHQILSDNE--LSNAALLVFANKQDLPNV--MPTAEVADKLELYSLGQRRWSIQSCSAISG 163 (181)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~piilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (181)
+++|+|+++++++..+..|+..+..... ...+|+++|+||+|+.+. ...++..... ...+++++++||++|
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~ 157 (178)
T 2hxs_A 83 VLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFC-----QENGFSSHFVSAKTG 157 (178)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHH-----HHHTCEEEEECTTTC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHH-----HHcCCcEEEEeCCCC
Confidence 9999999999999988888777654210 123458999999998652 2233333322 123458999999999
Q ss_pred CCHHHHHHHHHhhhhcc
Q 030233 164 QGLYEGLDWLSNNISVK 180 (181)
Q Consensus 164 ~~i~~l~~~i~~~~~~~ 180 (181)
+|++++|++|.+.+.+.
T Consensus 158 ~gi~~l~~~l~~~~~~~ 174 (178)
T 2hxs_A 158 DSVFLCFQKVAAEILGI 174 (178)
T ss_dssp TTHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHhh
Confidence 99999999999988765
No 38
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.98 E-value=8.9e-33 Score=186.37 Aligned_cols=163 Identities=21% Similarity=0.277 Sum_probs=129.2
Q ss_pred CCCCccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEE-EEEECC--eEEEEEEcCCChhhHHHHHhhccCCCEE
Q 030233 13 FPQCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVE-AVEYKN--KSFCVWDVGGQNKIRALWRHYFRDTLGL 88 (181)
Q Consensus 13 ~~~~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~-~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~d~i 88 (181)
.+.+.++|+++|++|+|||||+++++++.+. .+.+|.+.... .+...+ ..+.+|||||++.+...+..+++.+|++
T Consensus 5 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~ 84 (181)
T 2fn4_A 5 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGF 84 (181)
T ss_dssp CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEE
Confidence 3457899999999999999999999988753 44566665443 344444 5789999999999998899999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhhCccccCCccEEEEEeeccCCCCH
Q 030233 89 TFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV--MPTAEVADKLELYSLGQRRWSIQSCSAISGQGL 166 (181)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 166 (181)
++|+|+++++++.....|+..++......+.|+++|+||+|+.+. ...++..... ...+++++++||++|+|+
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~gv 159 (181)
T 2fn4_A 85 LLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFG-----ASHHVAYFEASAKLRLNV 159 (181)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHH-----HHTTCEEEECBTTTTBSH
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHH-----HHcCCeEEEecCCCCCCH
Confidence 999999999999999999888865544468999999999998653 2223332221 223558999999999999
Q ss_pred HHHHHHHHhhhhcc
Q 030233 167 YEGLDWLSNNISVK 180 (181)
Q Consensus 167 ~~l~~~i~~~~~~~ 180 (181)
+++|++|.+.+.++
T Consensus 160 ~~l~~~l~~~~~~~ 173 (181)
T 2fn4_A 160 DEAFEQLVRAVRKY 173 (181)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999887643
No 39
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.98 E-value=2.8e-31 Score=178.72 Aligned_cols=160 Identities=21% Similarity=0.307 Sum_probs=126.8
Q ss_pred CCCccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEE--EEEEC--CeEEEEEEcCCChhhHHHHHhhccCCCEE
Q 030233 14 PQCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVE--AVEYK--NKSFCVWDVGGQNKIRALWRHYFRDTLGL 88 (181)
Q Consensus 14 ~~~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~--~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~d~i 88 (181)
..+.++|+++|++|+|||||+++++++.+. .+.++.+.+.. .+... ...+.+|||||++.+...+..+++.+|++
T Consensus 12 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 91 (179)
T 1z0f_A 12 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGA 91 (179)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCEE
Confidence 345799999999999999999999998854 34566665433 34443 46899999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhhCccccCCccEEEEEeeccCCCCH
Q 030233 89 TFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV--MPTAEVADKLELYSLGQRRWSIQSCSAISGQGL 166 (181)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 166 (181)
++|+|++++.++.....|+..+.... ..+.|+++|+||+|+.+. ...++..... ...+++++++||++|+|+
T Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi 165 (179)
T 1z0f_A 92 LMVYDITRRSTYNHLSSWLTDARNLT-NPNTVIILIGNKADLEAQRDVTYEEAKQFA-----EENGLLFLEASAKTGENV 165 (179)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHH-----HHTTCEEEECCTTTCTTH
T ss_pred EEEEeCcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECcccccccccCHHHHHHHH-----HHcCCEEEEEeCCCCCCH
Confidence 99999999999999888887775532 257999999999999642 2333433332 123458999999999999
Q ss_pred HHHHHHHHhhhhc
Q 030233 167 YEGLDWLSNNISV 179 (181)
Q Consensus 167 ~~l~~~i~~~~~~ 179 (181)
+++|+++.+.+.+
T Consensus 166 ~~l~~~l~~~i~~ 178 (179)
T 1z0f_A 166 EDAFLEAAKKIYQ 178 (179)
T ss_dssp HHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhh
Confidence 9999999998765
No 40
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.98 E-value=4.8e-32 Score=185.39 Aligned_cols=168 Identities=19% Similarity=0.233 Sum_probs=126.0
Q ss_pred HHhhhhCCCCccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEEE-EEEC--CeEEEEEEcCCChhhHHHHHhhc
Q 030233 7 RLAKRFFPQCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVEA-VEYK--NKSFCVWDVGGQNKIRALWRHYF 82 (181)
Q Consensus 7 ~~~~~~~~~~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~~-~~~~--~~~~~i~d~~g~~~~~~~~~~~~ 82 (181)
++++++.+.+.++|+++|++|+|||||+++++++.+. .+.+|.+..... +... ...+.+|||||++. ...+..++
T Consensus 18 ~~~~~~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~ 96 (196)
T 2atv_A 18 LYFQSMAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-TIQREGHM 96 (196)
T ss_dssp ---------CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-CHHHHHHH
T ss_pred cchhccCCCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-ccchhhhh
Confidence 3455566678899999999999999999999998754 445666654432 3443 46799999999988 77788899
Q ss_pred cCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhhCccccCCccEEEEEeec
Q 030233 83 RDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV--MPTAEVADKLELYSLGQRRWSIQSCSA 160 (181)
Q Consensus 83 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (181)
+.+|++++|||+++++++..+..|+..+.......+.|+++|+||+|+.+. ...++..... ...+++++++||
T Consensus 97 ~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa 171 (196)
T 2atv_A 97 RWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLA-----TELACAFYECSA 171 (196)
T ss_dssp HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHH-----HHHTSEEEECCT
T ss_pred ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHH-----HHhCCeEEEECC
Confidence 999999999999999999999888887766433468999999999998652 2333333222 123458999999
Q ss_pred cCCC-CHHHHHHHHHhhhhcc
Q 030233 161 ISGQ-GLYEGLDWLSNNISVK 180 (181)
Q Consensus 161 ~~~~-~i~~l~~~i~~~~~~~ 180 (181)
++|+ |++++|++|.+.+.++
T Consensus 172 ~~g~~gi~~l~~~l~~~i~~~ 192 (196)
T 2atv_A 172 CTGEGNITEIFYELCREVRRR 192 (196)
T ss_dssp TTCTTCHHHHHHHHHHHHHHH
T ss_pred CcCCcCHHHHHHHHHHHHHhh
Confidence 9999 9999999999987653
No 41
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.98 E-value=2.3e-31 Score=178.93 Aligned_cols=162 Identities=15% Similarity=0.268 Sum_probs=126.5
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEE--EEEECC--eEEEEEEcCCChhhHHHHHhhccCCCEEE
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVE--AVEYKN--KSFCVWDVGGQNKIRALWRHYFRDTLGLT 89 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~--~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~d~ii 89 (181)
.+.++|+++|++|+|||||+++++++.+. ...++.+.+.. .+...+ ..+.+|||||++.+...+..+++.+|+++
T Consensus 5 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 84 (177)
T 1wms_A 5 SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCL 84 (177)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEE
T ss_pred cceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEEE
Confidence 45789999999999999999999988754 45667765543 344444 58999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcC---CCCCCCeEEEEEeCCCCCCC-CCHHHHHhhhCccccCCccEEEEEeeccCCCC
Q 030233 90 FVVDSSDRERISEARNELHQILSD---NELSNAALLVFANKQDLPNV-MPTAEVADKLELYSLGQRRWSIQSCSAISGQG 165 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~---~~~~~~piilv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (181)
+|+|++++.++.....|+..+... ....+.|+++|+||+|+... ...++...... ....++++++||++|+|
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~g 160 (177)
T 1wms_A 85 LTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCR----DNGDYPYFETSAKDATN 160 (177)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHH----HTTCCCEEECCTTTCTT
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHH----hcCCceEEEEeCCCCCC
Confidence 999999999999888888776543 12257899999999998632 33444443322 12345799999999999
Q ss_pred HHHHHHHHHhhhhcc
Q 030233 166 LYEGLDWLSNNISVK 180 (181)
Q Consensus 166 i~~l~~~i~~~~~~~ 180 (181)
++++|+++.+.+.++
T Consensus 161 i~~l~~~l~~~~~~~ 175 (177)
T 1wms_A 161 VAAAFEEAVRRVLAT 175 (177)
T ss_dssp HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999988764
No 42
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.98 E-value=1.5e-31 Score=183.72 Aligned_cols=158 Identities=19% Similarity=0.262 Sum_probs=126.1
Q ss_pred CccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEE--EEEECC--eEEEEEEcCCChhhHHHHHhhccCCCEEEE
Q 030233 16 CRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVE--AVEYKN--KSFCVWDVGGQNKIRALWRHYFRDTLGLTF 90 (181)
Q Consensus 16 ~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~--~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~ 90 (181)
+.++|+++|++|+|||||+++++++.+. .+.+|.+.+.. .+.+.+ ..+.+|||||++.+...+..+++.+|++++
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 104 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALIL 104 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence 4689999999999999999999988754 45667665543 344444 589999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhhCccccCCccEEEEEeeccCCCCHHH
Q 030233 91 VVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV--MPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYE 168 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (181)
|+|+++++++..+..|+..+.... ..+.|+++|+||+|+.+. ...++..... ...+++++++||++|+|+++
T Consensus 105 v~D~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~g~gv~~ 178 (201)
T 2ew1_A 105 TYDITCEESFRCLPEWLREIEQYA-SNKVITVLVGNKIDLAERREVSQQRAEEFS-----EAQDMYYLETSAKESDNVEK 178 (201)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCSSCHHHHHHHH-----HHHTCCEEECCTTTCTTHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHH-----HHcCCEEEEEeCCCCCCHHH
Confidence 999999999999988888775532 257999999999998642 2233333222 12345799999999999999
Q ss_pred HHHHHHhhhhc
Q 030233 169 GLDWLSNNISV 179 (181)
Q Consensus 169 l~~~i~~~~~~ 179 (181)
+|+++.+.+.+
T Consensus 179 l~~~l~~~i~~ 189 (201)
T 2ew1_A 179 LFLDLACRLIS 189 (201)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999987754
No 43
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.98 E-value=3.1e-32 Score=181.99 Aligned_cols=159 Identities=23% Similarity=0.336 Sum_probs=127.0
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhcCCc-ccccCccceeEEE--EEEC--CeEEEEEEcCCChhhHHHHHhhccCCCEEE
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKLGEI-VTTTPTIGFNVEA--VEYK--NKSFCVWDVGGQNKIRALWRHYFRDTLGLT 89 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~-~~~~~~~~~~~~~--~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii 89 (181)
++.++|+++|++|+|||||+++++++.+ ..+.++.+.+... +... ...+.+|||||.+.+...+..+++.+|+++
T Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i 83 (170)
T 1z0j_A 4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI 83 (170)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEE
Confidence 4578999999999999999999999885 4456777765443 3343 478999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhhCccccCCccEEEEEeeccCCCCHH
Q 030233 90 FVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVM--PTAEVADKLELYSLGQRRWSIQSCSAISGQGLY 167 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (181)
+|+|++++.++.....|+..+... ..+..|+++|+||+|+.+.. ..++..... ...+.+++++||++|.|++
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~ 157 (170)
T 1z0j_A 84 IVYDITKEETFSTLKNWVRELRQH-GPPSIVVAIAGNKCDLTDVREVMERDAKDYA-----DSIHAIFVETSAKNAININ 157 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHH-SCTTSEEEEEEECTTCGGGCCSCHHHHHHHH-----HHTTCEEEECBTTTTBSHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEECCccccccccCHHHHHHHH-----HHcCCEEEEEeCCCCcCHH
Confidence 999999999999988888777553 23689999999999996532 233332222 1234589999999999999
Q ss_pred HHHHHHHhhhhc
Q 030233 168 EGLDWLSNNISV 179 (181)
Q Consensus 168 ~l~~~i~~~~~~ 179 (181)
++|++|.+.+.+
T Consensus 158 ~l~~~i~~~i~~ 169 (170)
T 1z0j_A 158 ELFIEISRRIPS 169 (170)
T ss_dssp HHHHHHHHHCCC
T ss_pred HHHHHHHHHHhc
Confidence 999999988753
No 44
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.98 E-value=7.2e-32 Score=183.17 Aligned_cols=160 Identities=22% Similarity=0.283 Sum_probs=123.4
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhcCCccc-ccCccceeE-EEEEECC--eEEEEEEcCCChhhHHHHHhhccCCCEEEE
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKLGEIVT-TTPTIGFNV-EAVEYKN--KSFCVWDVGGQNKIRALWRHYFRDTLGLTF 90 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~~-~~~~~~~~~-~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~ 90 (181)
.++++|+++|++|+|||||+++++++.+.. +.++.+... ..+...+ ..+.+|||||++.+...+..+++.+|++++
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 81 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 81 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence 457899999999999999999999887543 444544332 2333444 457889999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC-HHHHHhhhCccccCCccEEEEEeeccCCCCHHHH
Q 030233 91 VVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMP-TAEVADKLELYSLGQRRWSIQSCSAISGQGLYEG 169 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 169 (181)
|+|+++++++.....|+..+.......+.|+++|+||+|+.+... .+...... ...+++++++||++|+|++++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~g~gi~~l 156 (189)
T 4dsu_A 82 VFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLA-----RSYGIPFIETSAKTRQGVDDA 156 (189)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHH-----HHHTCCEEECCTTTCTTHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHH-----HHcCCeEEEEeCCCCCCHHHH
Confidence 999999999999999988887755556899999999999975432 33332222 122347999999999999999
Q ss_pred HHHHHhhhhc
Q 030233 170 LDWLSNNISV 179 (181)
Q Consensus 170 ~~~i~~~~~~ 179 (181)
|+++.+.+.+
T Consensus 157 ~~~l~~~~~~ 166 (189)
T 4dsu_A 157 FYTLVREIRK 166 (189)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988754
No 45
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.98 E-value=1.9e-31 Score=183.56 Aligned_cols=164 Identities=23% Similarity=0.256 Sum_probs=129.8
Q ss_pred hhCCCCccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeE-EEEEECC--eEEEEEEcCCChhhHHHHHhhccCCC
Q 030233 11 RFFPQCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNV-EAVEYKN--KSFCVWDVGGQNKIRALWRHYFRDTL 86 (181)
Q Consensus 11 ~~~~~~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~-~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~d 86 (181)
...+++.++|+++|++|+|||||++++.++.+. .+.+|.+... ..+...+ ..+.+|||||++.+...+..+++.+|
T Consensus 8 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~ 87 (206)
T 2bov_A 8 GQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGE 87 (206)
T ss_dssp ---CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCS
T ss_pred CCCCCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCC
Confidence 344567899999999999999999999988753 4456665443 3344444 58999999999999999999999999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhhCccccCCccEEEEEeeccCCC
Q 030233 87 GLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV--MPTAEVADKLELYSLGQRRWSIQSCSAISGQ 164 (181)
Q Consensus 87 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (181)
++++|||+++++++.....|+..+.......+.|+++|+||+|+.+. ...++..... ...+++++++||++|.
T Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~g~ 162 (206)
T 2bov_A 88 GFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRA-----EQWNVNYVETSAKTRA 162 (206)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHH-----HHHTCEEEEECTTTCT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHH-----HHhCCeEEEEeCCCCC
Confidence 99999999999999999999888876544458999999999998653 3333433332 1234579999999999
Q ss_pred CHHHHHHHHHhhhhc
Q 030233 165 GLYEGLDWLSNNISV 179 (181)
Q Consensus 165 ~i~~l~~~i~~~~~~ 179 (181)
|++++|++|.+.+.+
T Consensus 163 gi~~l~~~l~~~i~~ 177 (206)
T 2bov_A 163 NVDKVFFDLMREIRA 177 (206)
T ss_dssp THHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999988765
No 46
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.98 E-value=8.2e-33 Score=184.10 Aligned_cols=160 Identities=16% Similarity=0.232 Sum_probs=125.9
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhcCCcc-cccCcccee-EEEEEECC--eEEEEEEcCCChhhHHHHHhhccCCCEEEE
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFN-VEAVEYKN--KSFCVWDVGGQNKIRALWRHYFRDTLGLTF 90 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~-~~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~ 90 (181)
+++++|+++|++|+|||||+++++++.+. .+.++.+.. ...+...+ ..+.+|||||++.+...+..+++.+|++++
T Consensus 1 m~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~ 80 (167)
T 1kao_A 1 MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIL 80 (167)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEE
Confidence 35789999999999999999999988754 344555433 23344444 459999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhhCccccCCccEEEEEeeccCCCCHHH
Q 030233 91 VVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVM--PTAEVADKLELYSLGQRRWSIQSCSAISGQGLYE 168 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (181)
|+|++++.+++....|+..+.......+.|+++|+||+|+.+.. ..++..... ...+++++++||++|+|+++
T Consensus 81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~ 155 (167)
T 1kao_A 81 VYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALA-----EEWGCPFMETSAKSKTMVDE 155 (167)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHH-----HHHTSCEEEECTTCHHHHHH
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHH-----HHhCCCEEEecCCCCcCHHH
Confidence 99999999999999998888765444689999999999986432 223222221 11234799999999999999
Q ss_pred HHHHHHhhhhc
Q 030233 169 GLDWLSNNISV 179 (181)
Q Consensus 169 l~~~i~~~~~~ 179 (181)
+|+++.+.+.+
T Consensus 156 l~~~l~~~~~~ 166 (167)
T 1kao_A 156 LFAEIVRQMNY 166 (167)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 99999988764
No 47
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.98 E-value=3.9e-32 Score=187.58 Aligned_cols=160 Identities=13% Similarity=0.143 Sum_probs=119.1
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhcCC--cccccCccceeE--EEEEECC--eEEEEEEcCCChh-hHHHHHhhccCCCE
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKLGE--IVTTTPTIGFNV--EAVEYKN--KSFCVWDVGGQNK-IRALWRHYFRDTLG 87 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~~~--~~~~~~~~~~~~--~~~~~~~--~~~~i~d~~g~~~-~~~~~~~~~~~~d~ 87 (181)
...++|+++|++|+|||||++++++.. +....++++.+. ..+.+.+ ..+.+|||+|.+. +..+...+++.+++
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~ 114 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA 114 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCCE
Confidence 356899999999999999999999754 333334454433 3344544 4678999999877 55567777889999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhhCccccCCccEEEEEeeccCCCC
Q 030233 88 LTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV--MPTAEVADKLELYSLGQRRWSIQSCSAISGQG 165 (181)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (181)
+++|||++++++|..+..|+..+.......++|+++|+||+|+.+. ...++... + +...++++++|||++|+|
T Consensus 115 ~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~-~----a~~~~~~~~e~SAk~g~~ 189 (211)
T 2g3y_A 115 YLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRA-C----AVVFDCKFIETSAAVQHN 189 (211)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHH-H----HHHHTCEEEECBTTTTBS
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHH-H----HHHcCCEEEEEeCCCCCC
Confidence 9999999999999999998887765433357999999999998642 22222211 1 112345799999999999
Q ss_pred HHHHHHHHHhhhhc
Q 030233 166 LYEGLDWLSNNISV 179 (181)
Q Consensus 166 i~~l~~~i~~~~~~ 179 (181)
++++|+++.+.+..
T Consensus 190 v~elf~~l~~~i~~ 203 (211)
T 2g3y_A 190 VKELFEGIVRQVRL 203 (211)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988754
No 48
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.98 E-value=1.2e-31 Score=179.15 Aligned_cols=159 Identities=21% Similarity=0.294 Sum_probs=119.9
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEE--EEEE--CCeEEEEEEcCCChhhHHHHHhhccCCCEEE
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVE--AVEY--KNKSFCVWDVGGQNKIRALWRHYFRDTLGLT 89 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~--~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii 89 (181)
.+.++|+++|++|+|||||+++++++.+. ...++.+.+.. .+.. ....+.+|||||++.+...+..+++.+|+++
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 83 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAI 83 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEE
Confidence 45789999999999999999999988754 45566665544 3333 3458999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhhCccccCCccEEEEEeeccCCCCHH
Q 030233 90 FVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV--MPTAEVADKLELYSLGQRRWSIQSCSAISGQGLY 167 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (181)
+|+|+++++++.....|+..+.... ..+.|+++|+||+|+.+. ...++..... ...+++++++||++|+|++
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~ 157 (170)
T 1z08_A 84 LVYDITDEDSFQKVKNWVKELRKML-GNEICLCIVGNKIDLEKERHVSIQEAESYA-----ESVGAKHYHTSAKQNKGIE 157 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHH-GGGSEEEEEEECGGGGGGCCSCHHHHHHHH-----HHTTCEEEEEBTTTTBSHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEECcccccccccCHHHHHHHH-----HHcCCeEEEecCCCCCCHH
Confidence 9999999999999988887765432 247999999999998652 2333333322 1234589999999999999
Q ss_pred HHHHHHHhhhhc
Q 030233 168 EGLDWLSNNISV 179 (181)
Q Consensus 168 ~l~~~i~~~~~~ 179 (181)
++|++|.+.+.+
T Consensus 158 ~l~~~l~~~~~~ 169 (170)
T 1z08_A 158 ELFLDLCKRMIE 169 (170)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhh
Confidence 999999998765
No 49
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.98 E-value=2.1e-32 Score=186.12 Aligned_cols=162 Identities=20% Similarity=0.323 Sum_probs=123.9
Q ss_pred CCCCccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeE--EEEEECC--eEEEEEEcCCChhhH-HHHHhhccCCC
Q 030233 13 FPQCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNV--EAVEYKN--KSFCVWDVGGQNKIR-ALWRHYFRDTL 86 (181)
Q Consensus 13 ~~~~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~--~~~~~~~--~~~~i~d~~g~~~~~-~~~~~~~~~~d 86 (181)
..++.++|+++|++|+|||||+++++++.+. ...++.+.+. ..+...+ ..+.+|||||++.+. ..+..+++.+|
T Consensus 16 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d 95 (189)
T 1z06_A 16 SRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVH 95 (189)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCC
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCC
Confidence 3456799999999999999999999988754 3556666443 3444544 689999999999998 78889999999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhhCccccCCccEEEEEeeccCC-
Q 030233 87 GLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV--MPTAEVADKLELYSLGQRRWSIQSCSAISG- 163 (181)
Q Consensus 87 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~- 163 (181)
++++|+|++++.++..+..|+..+.......+.|+++|+||+|+.+. ...++..... ...+++++++||++|
T Consensus 96 ~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~ 170 (189)
T 1z06_A 96 AVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFA-----DTHSMPLFETSAKNPN 170 (189)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHH-----HHTTCCEEECCSSSGG
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHH-----HHcCCEEEEEeCCcCC
Confidence 99999999999999999999888876544468999999999999653 2233332222 123447999999999
Q ss_pred --CCHHHHHHHHHhhhhc
Q 030233 164 --QGLYEGLDWLSNNISV 179 (181)
Q Consensus 164 --~~i~~l~~~i~~~~~~ 179 (181)
+|++++|++|.+.+.+
T Consensus 171 ~~~~i~~l~~~l~~~i~~ 188 (189)
T 1z06_A 171 DNDHVEAIFMTLAHKLKS 188 (189)
T ss_dssp GGSCHHHHHHHHC-----
T ss_pred cccCHHHHHHHHHHHHhh
Confidence 9999999999988754
No 50
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.98 E-value=8e-32 Score=184.75 Aligned_cols=164 Identities=20% Similarity=0.325 Sum_probs=117.8
Q ss_pred hhCCCCccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeE--EEEEECC--eEEEEEEcCCChhhHHHHHhhccCC
Q 030233 11 RFFPQCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNV--EAVEYKN--KSFCVWDVGGQNKIRALWRHYFRDT 85 (181)
Q Consensus 11 ~~~~~~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~--~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~ 85 (181)
...+.+.++|+++|++|+|||||+++++++.+. .+.++.+.+. ..+...+ ..+.+|||||++.+...+..+++.+
T Consensus 22 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 101 (199)
T 2p5s_A 22 SFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKA 101 (199)
T ss_dssp ------CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHC
T ss_pred CcCcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhC
Confidence 344567899999999999999999999998853 4556666443 3344443 6799999999999999999999999
Q ss_pred CEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC--------CCCHHHHHhhhCccccCCccEEEEE
Q 030233 86 LGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPN--------VMPTAEVADKLELYSLGQRRWSIQS 157 (181)
Q Consensus 86 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (181)
|++++|+|++++.++..+..|+..+... ...+.|+++|+||+|+.+ ....++..... ...++++++
T Consensus 102 d~iilv~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~-----~~~~~~~~~ 175 (199)
T 2p5s_A 102 DGVLLLYDVTCEKSFLNIREWVDMIEDA-AHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLA-----MTYGALFCE 175 (199)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHH-C---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHH-----HHHTCEEEE
T ss_pred CEEEEEEECCChHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcccccccccccccccCHHHHHHHH-----HHcCCeEEE
Confidence 9999999999999999988888776543 224789999999999852 12222222211 223458999
Q ss_pred eeccCCCCHHHHHHHHHhhhhcc
Q 030233 158 CSAISGQGLYEGLDWLSNNISVK 180 (181)
Q Consensus 158 ~Sa~~~~~i~~l~~~i~~~~~~~ 180 (181)
+||++|+|++++|++|.+.+.++
T Consensus 176 ~SA~~g~gv~el~~~l~~~i~~~ 198 (199)
T 2p5s_A 176 TSAKDGSNIVEAVLHLAREVKKR 198 (199)
T ss_dssp CCTTTCTTHHHHHHHHHHHHTC-
T ss_pred eeCCCCCCHHHHHHHHHHHHHhh
Confidence 99999999999999999988764
No 51
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.98 E-value=2.8e-32 Score=186.52 Aligned_cols=161 Identities=17% Similarity=0.176 Sum_probs=122.0
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhcCCc-ccccCccc--eeEEEEEECC--eEEEEEEcCCChhhHH-HHHhhccCCCEE
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKLGEI-VTTTPTIG--FNVEAVEYKN--KSFCVWDVGGQNKIRA-LWRHYFRDTLGL 88 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~-~~~~~~~~--~~~~~~~~~~--~~~~i~d~~g~~~~~~-~~~~~~~~~d~i 88 (181)
...++|+++|++|||||||++++++... ....++.+ .....+.+.+ ..+.+|||+|++.+.. ++..+++.+|++
T Consensus 21 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~ 100 (195)
T 3cbq_A 21 DGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAF 100 (195)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCEE
Confidence 4578999999999999999999976432 12223333 2333444443 5788999999988765 778888999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhhCccccCCccEEEEEeeccCCCCH
Q 030233 89 TFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV--MPTAEVADKLELYSLGQRRWSIQSCSAISGQGL 166 (181)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 166 (181)
++|||+++++++..+..|+..+.......+.|+++|+||+|+.+. ...++..... ...+++++++||++|.|+
T Consensus 101 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a-----~~~~~~~~e~Sa~~~~~v 175 (195)
T 3cbq_A 101 LIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLA-----GTLSCKHIETSAALHHNT 175 (195)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHH-----HHTTCEEEEEBTTTTBSH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHH-----HHhCCEEEEEcCCCCCCH
Confidence 999999999999999999988766433357999999999999653 2333333222 122357999999999999
Q ss_pred HHHHHHHHhhhhcc
Q 030233 167 YEGLDWLSNNISVK 180 (181)
Q Consensus 167 ~~l~~~i~~~~~~~ 180 (181)
+++|+++.+.+.++
T Consensus 176 ~~lf~~l~~~i~~~ 189 (195)
T 3cbq_A 176 RELFEGAVRQIRLR 189 (195)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999988654
No 52
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.98 E-value=1.5e-32 Score=184.92 Aligned_cols=162 Identities=20% Similarity=0.340 Sum_probs=126.4
Q ss_pred CCCCccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeE--EEEEECC--eEEEEEEcCCChhhHHHHHhhccCCCE
Q 030233 13 FPQCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNV--EAVEYKN--KSFCVWDVGGQNKIRALWRHYFRDTLG 87 (181)
Q Consensus 13 ~~~~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~--~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~d~ 87 (181)
.|++.++|+++|++|+|||||+++++++.+. .+.++.+.+. ..+...+ ..+.+|||||++.+...+..+++.+|+
T Consensus 10 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 89 (179)
T 2y8e_A 10 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTV 89 (179)
T ss_dssp --CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSE
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCE
Confidence 3567899999999999999999999987754 3456665443 3344444 589999999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhhCccccCCccEEEEEeeccCCCC
Q 030233 88 LTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV--MPTAEVADKLELYSLGQRRWSIQSCSAISGQG 165 (181)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (181)
+++|+|++++.++.....|+..+.... ..+.|+++|+||+|+.+. ...++..... ...+++++++||++|+|
T Consensus 90 ~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~ 163 (179)
T 2y8e_A 90 AVVVYDITNTNSFHQTSKWIDDVRTER-GSDVIIMLVGNKTDLSDKRQVSTEEGERKA-----KELNVMFIETSAKAGYN 163 (179)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHH-TTSSEEEEEEECGGGGGGCCSCHHHHHHHH-----HHHTCEEEEEBTTTTBS
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCcccccCcCCHHHHHHHH-----HHcCCeEEEEeCCCCCC
Confidence 999999999999999988888776532 257999999999998643 2233333222 22345899999999999
Q ss_pred HHHHHHHHHhhhhcc
Q 030233 166 LYEGLDWLSNNISVK 180 (181)
Q Consensus 166 i~~l~~~i~~~~~~~ 180 (181)
++++|++|.+.+.++
T Consensus 164 i~~l~~~l~~~~~~~ 178 (179)
T 2y8e_A 164 VKQLFRRVAAALPGM 178 (179)
T ss_dssp HHHHHHHHHHTCC--
T ss_pred HHHHHHHHHHHHhhc
Confidence 999999999988764
No 53
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.98 E-value=7.3e-32 Score=182.44 Aligned_cols=158 Identities=21% Similarity=0.370 Sum_probs=100.2
Q ss_pred CccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEE--EEEECC--eEEEEEEcCCChhhHHHHHhhccCCCEEEE
Q 030233 16 CRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVE--AVEYKN--KSFCVWDVGGQNKIRALWRHYFRDTLGLTF 90 (181)
Q Consensus 16 ~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~--~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~ 90 (181)
..++|+++|++|+|||||+++++++.+. .+.++.+.+.. .+.+.+ ..+.+|||||++.+...+..+++.+|++++
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 86 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIML 86 (183)
T ss_dssp EEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEEE
Confidence 4689999999999999999999987754 44566664443 455555 789999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhhCccccCCccEEEEEeeccCCCCHHH
Q 030233 91 VVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV--MPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYE 168 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (181)
|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.+. ...++..... ...+++++++||++|+|+++
T Consensus 87 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~ 160 (183)
T 2fu5_C 87 VYDITNEKSFDNIRNWIRNIEEHA-SADVEKMILGNKCDVNDKRQVSKERGEKLA-----LDYGIKFMETSAKANINVEN 160 (183)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEEC--CCSCCCSCHHHHHHHH-----HHHTCEEEECCC---CCHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECccCCccCcCCHHHHHHHH-----HHcCCeEEEEeCCCCCCHHH
Confidence 999999999999998888776532 257999999999999753 2333333322 22345899999999999999
Q ss_pred HHHHHHhhhhc
Q 030233 169 GLDWLSNNISV 179 (181)
Q Consensus 169 l~~~i~~~~~~ 179 (181)
+|++|.+.+.+
T Consensus 161 l~~~l~~~i~~ 171 (183)
T 2fu5_C 161 AFFTLARDIKA 171 (183)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988754
No 54
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.98 E-value=3.4e-31 Score=179.50 Aligned_cols=159 Identities=22% Similarity=0.343 Sum_probs=126.7
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeE--EEEEECC--eEEEEEEcCCChhhHHHHHhhccCCCEEE
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNV--EAVEYKN--KSFCVWDVGGQNKIRALWRHYFRDTLGLT 89 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~--~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~d~ii 89 (181)
.+.++|+++|++|+|||||+++++++.+. .+.++.+.+. ..+...+ ..+.+|||||++.+...+..+++.+|+++
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 87 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGAL 87 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEE
Confidence 45689999999999999999999988754 4456666443 3344444 68999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhhCccccCCccEEEEEeeccCCCCHH
Q 030233 90 FVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV--MPTAEVADKLELYSLGQRRWSIQSCSAISGQGLY 167 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (181)
+|+|+++++++..+..|+..+..... .+.|+++|+||+|+.+. ...++..... ...+++++++||++|+|++
T Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~ 161 (186)
T 2bme_A 88 LVYDITSRETYNALTNWLTDARMLAS-QNIVIILCGNKKDLDADREVTFLEASRFA-----QENELMFLETSALTGENVE 161 (186)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECGGGGGGCCSCHHHHHHHH-----HHTTCEEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEECcccccccccCHHHHHHHH-----HHcCCEEEEecCCCCCCHH
Confidence 99999999999999888877654322 57999999999998642 2333333322 2234689999999999999
Q ss_pred HHHHHHHhhhhc
Q 030233 168 EGLDWLSNNISV 179 (181)
Q Consensus 168 ~l~~~i~~~~~~ 179 (181)
++|+++.+.+.+
T Consensus 162 ~l~~~l~~~~~~ 173 (186)
T 2bme_A 162 EAFVQCARKILN 173 (186)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988754
No 55
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.98 E-value=4.8e-32 Score=185.18 Aligned_cols=160 Identities=21% Similarity=0.341 Sum_probs=127.2
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEE--EEEECC--eEEEEEEcCCChhhHHHHHhhccCCCEEE
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVE--AVEYKN--KSFCVWDVGGQNKIRALWRHYFRDTLGLT 89 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~--~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~d~ii 89 (181)
...++|+++|++|+|||||+++++++.+. .+.++.+.+.. .+...+ ..+.+|||||++.+...+..+++.+|+++
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 93 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 93 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEE
Confidence 35689999999999999999999988754 44566664443 444554 68999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HHHHHhhhCccccCCccEEEEEeeccCCCCHH
Q 030233 90 FVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMP--TAEVADKLELYSLGQRRWSIQSCSAISGQGLY 167 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (181)
+|+|+++++++..+..|+..+.... ..+.|+++|+||+|+.+... .++..... ...+++++++||++|+|++
T Consensus 94 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~g~gv~ 167 (196)
T 3tkl_A 94 VVYDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTTKKVVDYTTAKEFA-----DSLGIPFLETSAKNATNVE 167 (196)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHH-----HHTTCCEEEECTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccccccccCHHHHHHHH-----HHcCCcEEEEeCCCCCCHH
Confidence 9999999999999998887775542 25799999999999875432 22222222 1233479999999999999
Q ss_pred HHHHHHHhhhhcc
Q 030233 168 EGLDWLSNNISVK 180 (181)
Q Consensus 168 ~l~~~i~~~~~~~ 180 (181)
++|++|.+.+.++
T Consensus 168 ~l~~~l~~~i~~~ 180 (196)
T 3tkl_A 168 QSFMTMAAEIKKR 180 (196)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987653
No 56
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.98 E-value=1.2e-31 Score=183.13 Aligned_cols=160 Identities=22% Similarity=0.259 Sum_probs=123.9
Q ss_pred CCCccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEEE-EEEC--CeEEEEEEcCCChhhHHHHHhhccCCCEEE
Q 030233 14 PQCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVEA-VEYK--NKSFCVWDVGGQNKIRALWRHYFRDTLGLT 89 (181)
Q Consensus 14 ~~~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~~-~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii 89 (181)
.++.++|+++|++|+|||||+++++++.+. .+.+|.+..... +... ...+.+|||||++.+...+..+++.+|+++
T Consensus 20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 99 (194)
T 3reg_A 20 GKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVL 99 (194)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred cceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEEE
Confidence 345799999999999999999999998854 456676655443 3333 356799999999999999999999999999
Q ss_pred EEEECCCcccHHHH-HHHHHHHHcCCCCCCCeEEEEEeCCCCCCC----CCHHHHHhhhCccccCCccEE-EEEeeccCC
Q 030233 90 FVVDSSDRERISEA-RNELHQILSDNELSNAALLVFANKQDLPNV----MPTAEVADKLELYSLGQRRWS-IQSCSAISG 163 (181)
Q Consensus 90 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~ 163 (181)
+|+|+++++++..+ ..|+..+... ..+.|+++|+||+|+.+. ...++...... ..++. ++++||++|
T Consensus 100 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~ 172 (194)
T 3reg_A 100 LCFAVNNRTSFDNISTKWEPEIKHY--IDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQ-----KLGCVAYIEASSVAK 172 (194)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHH--CTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHH-----HHTCSCEEECBTTTT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccCCCCcccHHHHHHHHH-----hcCCCEEEEeecCCC
Confidence 99999999999997 4455554332 257999999999998642 33333333221 12233 999999999
Q ss_pred CCHHHHHHHHHhhhhcc
Q 030233 164 QGLYEGLDWLSNNISVK 180 (181)
Q Consensus 164 ~~i~~l~~~i~~~~~~~ 180 (181)
+|++++|+++.+.+.++
T Consensus 173 ~gi~~l~~~l~~~i~~~ 189 (194)
T 3reg_A 173 IGLNEVFEKSVDCIFSN 189 (194)
T ss_dssp BSHHHHHHHHHHHHHCS
T ss_pred CCHHHHHHHHHHHHHhc
Confidence 99999999999988765
No 57
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.98 E-value=6e-31 Score=182.22 Aligned_cols=163 Identities=26% Similarity=0.377 Sum_probs=121.7
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEEC---CeEEEEEEcCCChhhHH-HHHhhccCCCEEEE
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYK---NKSFCVWDVGGQNKIRA-LWRHYFRDTLGLTF 90 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~d~~g~~~~~~-~~~~~~~~~d~ii~ 90 (181)
.+.++|+++|++|+|||||+++++++.+....++.......+.+. ...+.+|||||++.+.. .+..+++.+|++++
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i~ 84 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVF 84 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcceeeEEEEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEEEE
Confidence 457999999999999999999999988776666666666666665 68899999999999998 78889999999999
Q ss_pred EEECCCcc-cHHHHHHHHHHHHcC--CCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCc----------------------
Q 030233 91 VVDSSDRE-RISEARNELHQILSD--NELSNAALLVFANKQDLPNVMPTAEVADKLEL---------------------- 145 (181)
Q Consensus 91 v~d~~~~~-s~~~~~~~~~~~~~~--~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~---------------------- 145 (181)
|+|+++.. ++.....++..++.. ....+.|+++|+||+|+.+....+.+...+..
T Consensus 85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~~~~ 164 (214)
T 2fh5_B 85 VVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTA 164 (214)
T ss_dssp EEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC------------
T ss_pred EEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCCccc
Confidence 99998853 466666666555432 12257999999999999876555443332210
Q ss_pred -cccC---------C--ccEEEEEeeccCC------CCHHHHHHHHHhhh
Q 030233 146 -YSLG---------Q--RRWSIQSCSAISG------QGLYEGLDWLSNNI 177 (181)
Q Consensus 146 -~~~~---------~--~~~~~~~~Sa~~~------~~i~~l~~~i~~~~ 177 (181)
.... . ..+.|++|||++| +|++++|++|.+.+
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~~ 214 (214)
T 2fh5_B 165 PAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKIA 214 (214)
T ss_dssp CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHHC
T ss_pred cccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHhC
Confidence 0001 1 1788999999999 99999999998753
No 58
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.98 E-value=1.6e-31 Score=181.04 Aligned_cols=162 Identities=23% Similarity=0.277 Sum_probs=128.6
Q ss_pred CCCccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEE-EEEECC--eEEEEEEcCCChhhHHHHHhhccCCCEEE
Q 030233 14 PQCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVE-AVEYKN--KSFCVWDVGGQNKIRALWRHYFRDTLGLT 89 (181)
Q Consensus 14 ~~~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~-~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~d~ii 89 (181)
+++.++|+++|++|+|||||++++++..+. .+.++.+.... .+...+ ..+.+|||||++.+...+..+++.+|+++
T Consensus 15 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 94 (187)
T 2a9k_A 15 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL 94 (187)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEEE
Confidence 456799999999999999999999988754 34555554443 234444 57999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhhCccccCCccEEEEEeeccCCCCHH
Q 030233 90 FVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV--MPTAEVADKLELYSLGQRRWSIQSCSAISGQGLY 167 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (181)
+|+|+++++++.....|+..+.......+.|+++|+||+|+.+. ...++..... ...+++++++||++|+|++
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~ 169 (187)
T 2a9k_A 95 CVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRA-----EQWNVNYVETSAKTRANVD 169 (187)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHH-----HHTTCEEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHH-----HHcCCeEEEeCCCCCCCHH
Confidence 99999999999999998888876544458999999999998652 3334443333 2234589999999999999
Q ss_pred HHHHHHHhhhhcc
Q 030233 168 EGLDWLSNNISVK 180 (181)
Q Consensus 168 ~l~~~i~~~~~~~ 180 (181)
++|++|.+.+.++
T Consensus 170 ~l~~~l~~~i~~~ 182 (187)
T 2a9k_A 170 KVFFDLMREIRAR 182 (187)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999987653
No 59
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.98 E-value=3.2e-31 Score=180.83 Aligned_cols=159 Identities=20% Similarity=0.340 Sum_probs=127.3
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEEE--EEE--CCeEEEEEEcCCChhhHHHHHhhccCCCEEE
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVEA--VEY--KNKSFCVWDVGGQNKIRALWRHYFRDTLGLT 89 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~~--~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii 89 (181)
.+.++|+++|++|+|||||++++++..+. .+.++.+.+... +.. ....+.+|||||.+.+...+..+++.+|+++
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi 102 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGAL 102 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEEE
Confidence 45689999999999999999999998865 445666655443 333 4568899999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhhCccccCCccEEEEEeeccCCCCHH
Q 030233 90 FVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV--MPTAEVADKLELYSLGQRRWSIQSCSAISGQGLY 167 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (181)
+|+|++++.++..+..|+..+.... ..+.|+++|+||+|+... ...++..... ...+++++++||++|+|++
T Consensus 103 ~v~D~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~ 176 (193)
T 2oil_A 103 LVFDLTKHQTYAVVERWLKELYDHA-EATIVVMLVGNKSDLSQAREVPTEEARMFA-----ENNGLLFLETSALDSTNVE 176 (193)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHTTS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHH-----HHTTCEEEEECTTTCTTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEECCCcccccccCHHHHHHHH-----HHcCCEEEEEeCCCCCCHH
Confidence 9999999999999888888876543 357999999999998653 2233333322 2234589999999999999
Q ss_pred HHHHHHHhhhhc
Q 030233 168 EGLDWLSNNISV 179 (181)
Q Consensus 168 ~l~~~i~~~~~~ 179 (181)
++|++|.+.+.+
T Consensus 177 ~l~~~l~~~i~~ 188 (193)
T 2oil_A 177 LAFETVLKEIFA 188 (193)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988764
No 60
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.98 E-value=7.1e-31 Score=180.44 Aligned_cols=159 Identities=19% Similarity=0.351 Sum_probs=126.7
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEEE--EEEC--CeEEEEEEcCCChhhHHHHHhhccCCCEEE
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVEA--VEYK--NKSFCVWDVGGQNKIRALWRHYFRDTLGLT 89 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~~--~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii 89 (181)
...++|+++|++|+|||||++++++..+. .+.++.+.+... +... ...+.+|||||++.+...+..+++.+|+++
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 85 (203)
T 1zbd_A 6 DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFI 85 (203)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEE
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEE
Confidence 34689999999999999999999998864 456677655443 3333 468999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhhCccccCCccEEEEEeeccCCCCHH
Q 030233 90 FVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVM--PTAEVADKLELYSLGQRRWSIQSCSAISGQGLY 167 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (181)
+|+|+++++++..+..|+..+.... ..+.|+++|+||+|+.+.. ..++..... ...+++++++||++|.|++
T Consensus 86 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~ 159 (203)
T 1zbd_A 86 LMYDITNEESFNAVQDWSTQIKTYS-WDNAQVLLVGNKCDMEDERVVSSERGRQLA-----DHLGFEFFEASAKDNINVK 159 (203)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHS-CSSCEEEEEEECTTCTTSCCSCHHHHHHHH-----HHHTCEEEECBTTTTBSSH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccCcccccCHHHHHHHH-----HHCCCeEEEEECCCCCCHH
Confidence 9999999999999988888775532 3579999999999997532 233333222 1224579999999999999
Q ss_pred HHHHHHHhhhhc
Q 030233 168 EGLDWLSNNISV 179 (181)
Q Consensus 168 ~l~~~i~~~~~~ 179 (181)
++|++|.+.+.+
T Consensus 160 ~l~~~l~~~i~~ 171 (203)
T 1zbd_A 160 QTFERLVDVICE 171 (203)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999987654
No 61
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.98 E-value=1.2e-31 Score=182.78 Aligned_cols=159 Identities=21% Similarity=0.307 Sum_probs=124.3
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhcCCccc-ccCccceeE--EEEEECC--eEEEEEEcCCChhhHHHHHhhccCCCEEE
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKLGEIVT-TTPTIGFNV--EAVEYKN--KSFCVWDVGGQNKIRALWRHYFRDTLGLT 89 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~~-~~~~~~~~~--~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~d~ii 89 (181)
.+.++|+++|++|+|||||+++++++.+.. ..++.+.+. ..+...+ ..+.+|||||++.+...+..+++.+|+++
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 98 (191)
T 2a5j_A 19 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL 98 (191)
T ss_dssp CEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEEE
Confidence 457899999999999999999999888543 445555443 3444544 68999999999999988889999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhhCccccCCccEEEEEeeccCCCCHH
Q 030233 90 FVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV--MPTAEVADKLELYSLGQRRWSIQSCSAISGQGLY 167 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (181)
+|+|+++++++..+..|+..+.... ..+.|+++|+||+|+.+. ...++..... ...+++++++||++|+|++
T Consensus 99 ~v~d~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~ 172 (191)
T 2a5j_A 99 LVYDITRRETFNHLTSWLEDARQHS-SSNMVIMLIGNKSDLESRRDVKREEGEAFA-----REHGLIFMETSAKTACNVE 172 (191)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHH-----HHHTCEEEEECTTTCTTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccCCccccCHHHHHHHH-----HHcCCEEEEEeCCCCCCHH
Confidence 9999999999999998888876532 257999999999999642 2333333322 2234589999999999999
Q ss_pred HHHHHHHhhhhc
Q 030233 168 EGLDWLSNNISV 179 (181)
Q Consensus 168 ~l~~~i~~~~~~ 179 (181)
++|++|.+.+.+
T Consensus 173 ~l~~~l~~~i~~ 184 (191)
T 2a5j_A 173 EAFINTAKEIYR 184 (191)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988764
No 62
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.98 E-value=1.1e-32 Score=187.82 Aligned_cols=159 Identities=23% Similarity=0.388 Sum_probs=127.1
Q ss_pred CccEEEEEcCCCCChHHHHHhhhcCCc-ccccCccceeEEE--EEE--CCeEEEEEEcCCChhhHHHHHhhccCCCEEEE
Q 030233 16 CRIKLLMVGLDASGKTTILYKMKLGEI-VTTTPTIGFNVEA--VEY--KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTF 90 (181)
Q Consensus 16 ~~~~i~~~G~~~~GKssl~~~~~~~~~-~~~~~~~~~~~~~--~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~ 90 (181)
..+||+++|++|+|||||+++++++.+ ....++.+.+... +.. ....+.+|||||++.+...+..+++.+|++++
T Consensus 22 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 101 (191)
T 3dz8_A 22 YMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFIL 101 (191)
T ss_dssp ECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEEE
T ss_pred eeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEEE
Confidence 568999999999999999999998875 3445666644443 332 56889999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhhCccccCCccEEEEEeeccCCCCHHH
Q 030233 91 VVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV--MPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYE 168 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (181)
|||+++++++..+..|+..+... ...+.|+++|+||+|+.+. ...++..... ...+++++++||++|+|+++
T Consensus 102 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~ 175 (191)
T 3dz8_A 102 MYDITNEESFNAVQDWATQIKTY-SWDNAQVILVGNKCDMEEERVVPTEKGQLLA-----EQLGFDFFEASAKENISVRQ 175 (191)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHH-----HHHTCEEEECBTTTTBSHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECCCCccccccCHHHHHHHH-----HHcCCeEEEEECCCCCCHHH
Confidence 99999999999999888887653 2358999999999998643 2233322222 22345899999999999999
Q ss_pred HHHHHHhhhhcc
Q 030233 169 GLDWLSNNISVK 180 (181)
Q Consensus 169 l~~~i~~~~~~~ 180 (181)
+|++|.+.+.++
T Consensus 176 l~~~l~~~i~~~ 187 (191)
T 3dz8_A 176 AFERLVDAICDK 187 (191)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999987654
No 63
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.97 E-value=5.5e-31 Score=179.63 Aligned_cols=161 Identities=19% Similarity=0.321 Sum_probs=122.6
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEE--EEEECC--eEEEEEEcCCChhhHHHHHhhccCCCEEE
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVE--AVEYKN--KSFCVWDVGGQNKIRALWRHYFRDTLGLT 89 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~--~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~d~ii 89 (181)
...++|+++|++|+|||||+++++++.+. ...++.+.+.. .+.+.+ ..+.+|||||++.+...+..+++.+|+++
T Consensus 24 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii 103 (192)
T 2il1_A 24 DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGII 103 (192)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence 35689999999999999999999988754 44566664443 344444 68999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhhCccccCCccEEEEEeeccCCCCHH
Q 030233 90 FVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV--MPTAEVADKLELYSLGQRRWSIQSCSAISGQGLY 167 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (181)
+|+|++++.++..+..|+..+... ...+.|+++|+||+|+.+. ...++...... ...+.+++++||++|+|++
T Consensus 104 lV~D~~~~~s~~~~~~~~~~i~~~-~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~----~~~~~~~~~~SA~~g~gi~ 178 (192)
T 2il1_A 104 LVYDITKKETFDDLPKWMKMIDKY-ASEDAELLLVGNKLDCETDREITRQQGEKFAQ----QITGMRFCEASAKDNFNVD 178 (192)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHH----TSTTCEEEECBTTTTBSHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccCHHHHHHHHH----hcCCCeEEEEeCCCCCCHH
Confidence 999999999999988887666443 2257999999999998653 22333332221 1135689999999999999
Q ss_pred HHHHHHHhhhhcc
Q 030233 168 EGLDWLSNNISVK 180 (181)
Q Consensus 168 ~l~~~i~~~~~~~ 180 (181)
++|++|.+.+.++
T Consensus 179 ~l~~~l~~~i~~~ 191 (192)
T 2il1_A 179 EIFLKLVDDILKK 191 (192)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988654
No 64
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.97 E-value=7.4e-32 Score=179.81 Aligned_cols=159 Identities=19% Similarity=0.335 Sum_probs=126.1
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEE--EEEEC--CeEEEEEEcCCChhhHHHHHhhccCCCEEE
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVE--AVEYK--NKSFCVWDVGGQNKIRALWRHYFRDTLGLT 89 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~--~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii 89 (181)
.+.++|+++|++|+|||||+++++++.+. .+.++.+.+.. .+... ...+.+|||||++.+...+..+++.+|+++
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 82 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV 82 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence 45799999999999999999999988754 44666664443 34443 468999999999999888889999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhhCccccCCccEEEEEeeccCCCCHH
Q 030233 90 FVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV--MPTAEVADKLELYSLGQRRWSIQSCSAISGQGLY 167 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (181)
+|+|++++++++....|+..+.... .+.|+++|+||+|+.+. ...++..... ...+++++++||++|+|++
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~ 155 (168)
T 1z2a_A 83 LVFSTTDRESFEAISSWREKVVAEV--GDIPTALVQNKIDLLDDSCIKNEEAEGLA-----KRLKLRFYRTSVKEDLNVS 155 (168)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHH--CSCCEEEEEECGGGGGGCSSCHHHHHHHH-----HHHTCEEEECBTTTTBSSH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccCcccccCHHHHHHHH-----HHcCCeEEEEecCCCCCHH
Confidence 9999999999999888888776543 57899999999998652 2333333322 1234589999999999999
Q ss_pred HHHHHHHhhhhcc
Q 030233 168 EGLDWLSNNISVK 180 (181)
Q Consensus 168 ~l~~~i~~~~~~~ 180 (181)
++|++|.+.+.++
T Consensus 156 ~l~~~l~~~~~~~ 168 (168)
T 1z2a_A 156 EVFKYLAEKHLQK 168 (168)
T ss_dssp HHHHHHHHHHHC-
T ss_pred HHHHHHHHHHhhC
Confidence 9999999987653
No 65
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.97 E-value=2.7e-31 Score=184.35 Aligned_cols=160 Identities=26% Similarity=0.433 Sum_probs=126.6
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEE--EEEEC------------CeEEEEEEcCCChhhHHHHH
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVE--AVEYK------------NKSFCVWDVGGQNKIRALWR 79 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~--~~~~~------------~~~~~i~d~~g~~~~~~~~~ 79 (181)
.+.++|+++|++|+|||||+++++++.+. .+.+|.+.+.. .+.+. ...+.+|||||++.+...+.
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~ 102 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTT 102 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHH
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHHH
Confidence 45689999999999999999999988754 34556654433 23332 57899999999999999999
Q ss_pred hhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhhCccccCCccEEEEE
Q 030233 80 HYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV--MPTAEVADKLELYSLGQRRWSIQS 157 (181)
Q Consensus 80 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 157 (181)
.+++.+|++++|||++++.++..+..|+..+.......+.|+++|+||+|+.+. ...++..... ...++++++
T Consensus 103 ~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~ 177 (217)
T 2f7s_A 103 AFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELA-----DKYGIPYFE 177 (217)
T ss_dssp HHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHH-----HHTTCCEEE
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHH-----HHCCCcEEE
Confidence 999999999999999999999999888887755443368999999999998653 2233333322 123457999
Q ss_pred eeccCCCCHHHHHHHHHhhhhc
Q 030233 158 CSAISGQGLYEGLDWLSNNISV 179 (181)
Q Consensus 158 ~Sa~~~~~i~~l~~~i~~~~~~ 179 (181)
+||++|+|++++|++|.+.+.+
T Consensus 178 ~Sa~~g~gi~~l~~~l~~~i~~ 199 (217)
T 2f7s_A 178 TSAATGQNVEKAVETLLDLIMK 199 (217)
T ss_dssp EBTTTTBTHHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999988754
No 66
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.97 E-value=1e-31 Score=179.46 Aligned_cols=159 Identities=21% Similarity=0.354 Sum_probs=121.1
Q ss_pred CccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEE--EEEEC--CeEEEEEEcCCChhhHHHHHhhccCCCEEEE
Q 030233 16 CRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVE--AVEYK--NKSFCVWDVGGQNKIRALWRHYFRDTLGLTF 90 (181)
Q Consensus 16 ~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~--~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~ 90 (181)
..++|+++|++|+|||||+++++++.+. ...++.+.+.. .+... ...+.+|||||++.+...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence 4689999999999999999999988753 45566664443 34443 3689999999999998888899999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC-CHHHHHhhhCccccCCccEEEEEeeccCCCCHHHH
Q 030233 91 VVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVM-PTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEG 169 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 169 (181)
|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.... ..++..... ...+++++++||++|+|++++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gv~~l 155 (170)
T 1g16_A 82 VYDITDERTFTNIKQWFKTVNEHA-NDEAQLLLVGNKSDMETRVVTADQGEALA-----KELGIPFIESSAKNDDNVNEI 155 (170)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCTTCCSCHHHHHHHH-----HHHTCCEEECBTTTTBSHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCCcCccCHHHHHHHH-----HHcCCeEEEEECCCCCCHHHH
Confidence 999999999999888888776542 2579999999999995432 233332222 122347999999999999999
Q ss_pred HHHHHhhhhcc
Q 030233 170 LDWLSNNISVK 180 (181)
Q Consensus 170 ~~~i~~~~~~~ 180 (181)
|+++.+.+.++
T Consensus 156 ~~~l~~~~~~~ 166 (170)
T 1g16_A 156 FFTLAKLIQEK 166 (170)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 99999988654
No 67
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.97 E-value=1.1e-31 Score=186.01 Aligned_cols=161 Identities=20% Similarity=0.167 Sum_probs=124.9
Q ss_pred CCCCccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEEE-EEE--CCeEEEEEEcCCChhhHHHHHhhccCCCEE
Q 030233 13 FPQCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVEA-VEY--KNKSFCVWDVGGQNKIRALWRHYFRDTLGL 88 (181)
Q Consensus 13 ~~~~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~~-~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~d~i 88 (181)
.++..++|+++|++|+|||||+++++++.+. .+.+|.+..... +.. ....+.+|||+|++.+...+..+++.+|++
T Consensus 23 ~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 102 (214)
T 3q3j_B 23 PVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAV 102 (214)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred CccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEE
Confidence 3456799999999999999999999998864 446777765542 222 457899999999999999999999999999
Q ss_pred EEEEECCCcccHHH-HHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--------------CCHHHHHhhhCccccCCccE
Q 030233 89 TFVVDSSDRERISE-ARNELHQILSDNELSNAALLVFANKQDLPNV--------------MPTAEVADKLELYSLGQRRW 153 (181)
Q Consensus 89 i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~piilv~nK~D~~~~--------------~~~~~~~~~~~~~~~~~~~~ 153 (181)
++|||+++++++.. ...|+..+.... ++.|+++|+||+|+.++ ...++..... ...++
T Consensus 103 i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~~~ 175 (214)
T 3q3j_B 103 LLCFDISRPETVDSALKKWRTEILDYC--PSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIA-----KQLGA 175 (214)
T ss_dssp EEEEETTCTHHHHHHHTHHHHHHHHHC--TTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHH-----HHHTC
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHH-----HHcCC
Confidence 99999999999998 577777765532 58999999999998642 2333322222 22344
Q ss_pred -EEEEeeccCCCC-HHHHHHHHHhhhhcc
Q 030233 154 -SIQSCSAISGQG-LYEGLDWLSNNISVK 180 (181)
Q Consensus 154 -~~~~~Sa~~~~~-i~~l~~~i~~~~~~~ 180 (181)
+|++|||++|.| ++++|+++.+.+.++
T Consensus 176 ~~~~e~SA~~g~g~v~~lf~~l~~~~~~~ 204 (214)
T 3q3j_B 176 EIYLEGSAFTSEKSIHSIFRTASMLCLNK 204 (214)
T ss_dssp SEEEECCTTTCHHHHHHHHHHHHHHHHC-
T ss_pred CEEEEeccCCCcccHHHHHHHHHHHHhcc
Confidence 799999999998 999999999887654
No 68
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.97 E-value=3.6e-32 Score=183.40 Aligned_cols=158 Identities=23% Similarity=0.377 Sum_probs=125.5
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeE--EEEEECC--eEEEEEEcCCChhhHHHHHhhccCCCEEE
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNV--EAVEYKN--KSFCVWDVGGQNKIRALWRHYFRDTLGLT 89 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~--~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~d~ii 89 (181)
...++|+++|++|+|||||+++++++.+. .+.++.+.+. ..+...+ ..+.+|||||++.+...+..+++.+|+++
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 86 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVI 86 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEEE
Confidence 45789999999999999999999988754 4456665443 3455555 78999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhhCccccCCccEEEEEeeccCCCCHH
Q 030233 90 FVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVM--PTAEVADKLELYSLGQRRWSIQSCSAISGQGLY 167 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (181)
+|+|+++++++..+..|+..+.... ++.|+++|+||+|+.+.. ..++..... ...+++++++||++|+|++
T Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~ 159 (181)
T 3tw8_B 87 VVYDVTSAESFVNVKRWLHEINQNC--DDVCRILVGNKNDDPERKVVETEDAYKFA-----GQMGIQLFETSAKENVNVE 159 (181)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHC--TTSEEEEEEECTTCGGGCCSCHHHHHHHH-----HHHTCCEEECBTTTTBSHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECCCCchhcccCHHHHHHHH-----HHcCCeEEEEECCCCCCHH
Confidence 9999999999999998888876542 579999999999986532 222222222 1234479999999999999
Q ss_pred HHHHHHHhhhhc
Q 030233 168 EGLDWLSNNISV 179 (181)
Q Consensus 168 ~l~~~i~~~~~~ 179 (181)
++|+++.+.+.+
T Consensus 160 ~l~~~l~~~~~~ 171 (181)
T 3tw8_B 160 EMFNCITELVLR 171 (181)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988754
No 69
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.97 E-value=1.5e-30 Score=178.73 Aligned_cols=158 Identities=22% Similarity=0.335 Sum_probs=126.1
Q ss_pred CCCccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEEE--EEECC------------------------------
Q 030233 14 PQCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVEA--VEYKN------------------------------ 60 (181)
Q Consensus 14 ~~~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~~--~~~~~------------------------------ 60 (181)
..+.++|+++|++|+|||||++++++..+. .+.++.+..... +...+
T Consensus 4 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (208)
T 3clv_A 4 KKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQH 83 (208)
T ss_dssp CCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC------------------------------
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccc
Confidence 356799999999999999999999998754 445666644333 33332
Q ss_pred ---------eEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCC
Q 030233 61 ---------KSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLP 131 (181)
Q Consensus 61 ---------~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~ 131 (181)
..+.+|||||++.+...+..+++.+|++++|+|++++.++.....|+..+... ...|+++|+||+|..
T Consensus 84 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~---~~~piilv~NK~D~~ 160 (208)
T 3clv_A 84 NNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKIS---SNYIIILVANKIDKN 160 (208)
T ss_dssp -CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH---SCCEEEEEEECTTCC
T ss_pred ccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhh---CCCcEEEEEECCCcc
Confidence 78999999999999999999999999999999999999999998888888664 249999999999943
Q ss_pred C-CCCHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHHHHHHhhhhc
Q 030233 132 N-VMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNISV 179 (181)
Q Consensus 132 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 179 (181)
. ....+++..... ..+++++++||++|+|++++|++|.+.+.+
T Consensus 161 ~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 204 (208)
T 3clv_A 161 KFQVDILEVQKYAQ-----DNNLLFIQTSAKTGTNIKNIFYMLAEEIYK 204 (208)
T ss_dssp -CCSCHHHHHHHHH-----HTTCEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHH-----HcCCcEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 2 233444444332 234589999999999999999999988765
No 70
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.97 E-value=4.2e-31 Score=175.55 Aligned_cols=160 Identities=20% Similarity=0.261 Sum_probs=125.2
Q ss_pred CccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEE-EEEEC--CeEEEEEEcCCChhhHHHHHhhccCCCEEEEE
Q 030233 16 CRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVE-AVEYK--NKSFCVWDVGGQNKIRALWRHYFRDTLGLTFV 91 (181)
Q Consensus 16 ~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~-~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v 91 (181)
+.++|+++|++|+|||||+++++++.+. ...++.+.... .+... ...+.+||+||++.+...+..+++.+|++++|
T Consensus 2 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (166)
T 2ce2_X 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 81 (166)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence 4689999999999999999999988754 34455554332 23333 35689999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC-CHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHH
Q 030233 92 VDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVM-PTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGL 170 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 170 (181)
+|++++.++.....|+..+.......+.|+++|+||+|+.+.. ..++..... ...+++++++||++|.|++++|
T Consensus 82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l~ 156 (166)
T 2ce2_X 82 FAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLA-----RSYGIPYIETSAKTRQGVEDAF 156 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHH-----HHHTCCEEEECTTTCTTHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHH-----HHcCCeEEEecCCCCCCHHHHH
Confidence 9999999999998888877654333579999999999987632 333333322 1223479999999999999999
Q ss_pred HHHHhhhhcc
Q 030233 171 DWLSNNISVK 180 (181)
Q Consensus 171 ~~i~~~~~~~ 180 (181)
+++.+.+.++
T Consensus 157 ~~l~~~~~~~ 166 (166)
T 2ce2_X 157 YTLVREIRQH 166 (166)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHHhC
Confidence 9999988653
No 71
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.97 E-value=3.4e-31 Score=180.17 Aligned_cols=159 Identities=21% Similarity=0.375 Sum_probs=126.4
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEEE--EEEC--CeEEEEEEcCCChhhHHHHHhhccCCCEEE
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVEA--VEYK--NKSFCVWDVGGQNKIRALWRHYFRDTLGLT 89 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~~--~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii 89 (181)
...++|+++|++|+|||||+++++++.+. .+.++.+.+... +... ...+.+|||||++.+...+..+++.+|+++
T Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 99 (189)
T 2gf9_A 20 DYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFL 99 (189)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEEE
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEEE
Confidence 35689999999999999999999998864 456676655443 3333 468999999999999988999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhhCccccCCccEEEEEeeccCCCCHH
Q 030233 90 FVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVM--PTAEVADKLELYSLGQRRWSIQSCSAISGQGLY 167 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (181)
+|+|++++.++.....|+..+.... ..+.|+++|+||+|+.+.. ..++..... ...+++++++||++|.|++
T Consensus 100 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~g~gi~ 173 (189)
T 2gf9_A 100 LMYDIANQESFAAVQDWATQIKTYS-WDNAQVILVGNKCDLEDERVVPAEDGRRLA-----DDLGFEFFEASAKENINVK 173 (189)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHH-----HHHTCEEEECBTTTTBSHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccccccCCCHHHHHHHH-----HHcCCeEEEEECCCCCCHH
Confidence 9999999999999988887775532 3579999999999986532 233333222 1224589999999999999
Q ss_pred HHHHHHHhhhhc
Q 030233 168 EGLDWLSNNISV 179 (181)
Q Consensus 168 ~l~~~i~~~~~~ 179 (181)
++|++|.+.+.+
T Consensus 174 ~l~~~l~~~i~~ 185 (189)
T 2gf9_A 174 QVFERLVDVICE 185 (189)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988765
No 72
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.97 E-value=1.1e-31 Score=181.18 Aligned_cols=163 Identities=15% Similarity=0.234 Sum_probs=114.9
Q ss_pred CCCccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEEE--EEEC---CeEEEEEEcCCChhhHHHHHhhccCCCE
Q 030233 14 PQCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVEA--VEYK---NKSFCVWDVGGQNKIRALWRHYFRDTLG 87 (181)
Q Consensus 14 ~~~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~~--~~~~---~~~~~i~d~~g~~~~~~~~~~~~~~~d~ 87 (181)
+.+.++|+++|++|+|||||++++++..+. .+.++.+.+... +... ...+.+|||||++.+...+..+++.+|+
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 84 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADC 84 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCE
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCE
Confidence 346799999999999999999999998754 445666544333 3333 4689999999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHcCC---CCCCCeEEEEEeCCCCCCC---CCHHHHHhhhCccccCCccEEEEEeecc
Q 030233 88 LTFVVDSSDRERISEARNELHQILSDN---ELSNAALLVFANKQDLPNV---MPTAEVADKLELYSLGQRRWSIQSCSAI 161 (181)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~piilv~nK~D~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (181)
+++|+|++++.++.....|+..+.... ...+.|+++|+||+|+... ...++...... ...+.+++++||+
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~----~~~~~~~~~~Sa~ 160 (182)
T 1ky3_A 85 CVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAK----SLGDIPLFLTSAK 160 (182)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHH----HTTSCCEEEEBTT
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHH----hcCCCeEEEEecC
Confidence 999999999999999988887775432 2357899999999998542 22333333221 1234579999999
Q ss_pred CCCCHHHHHHHHHhhhhcc
Q 030233 162 SGQGLYEGLDWLSNNISVK 180 (181)
Q Consensus 162 ~~~~i~~l~~~i~~~~~~~ 180 (181)
+|+|++++|++|.+.+.++
T Consensus 161 ~~~gi~~l~~~l~~~~~~~ 179 (182)
T 1ky3_A 161 NAINVDTAFEEIARSALQQ 179 (182)
T ss_dssp TTBSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHh
Confidence 9999999999999887653
No 73
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=6.6e-32 Score=180.62 Aligned_cols=160 Identities=15% Similarity=0.190 Sum_probs=123.4
Q ss_pred CccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEEE-EEEC--CeEEEEEEcCCChhhHHHHHhhccCCCEEEEE
Q 030233 16 CRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVEA-VEYK--NKSFCVWDVGGQNKIRALWRHYFRDTLGLTFV 91 (181)
Q Consensus 16 ~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~~-~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v 91 (181)
+.++|+++|++|+|||||+++++++.+. .+.++.+.+... +... ...+.+|||||++.+...+..+++.+|++++|
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v 81 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV 81 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEE
Confidence 4689999999999999999999988754 445666544433 3333 35789999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHcCC-CCCCCeEEEEEeCCCCCCCC--CHHHHHhhhCccccCCccEEEEEeeccCCCCHHH
Q 030233 92 VDSSDRERISEARNELHQILSDN-ELSNAALLVFANKQDLPNVM--PTAEVADKLELYSLGQRRWSIQSCSAISGQGLYE 168 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (181)
+|++++.++.....|+..+.+.. ...+.|+++|+||+|+.... ...+..... ...+++++++||++|.|+++
T Consensus 82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~ 156 (172)
T 2erx_A 82 YSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALA-----RTWKCAFMETSAKLNHNVKE 156 (172)
T ss_dssp EETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHH-----HHHTCEEEECBTTTTBSHHH
T ss_pred EECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHH-----HHhCCeEEEecCCCCcCHHH
Confidence 99999999988888877665431 22478999999999986432 222222211 22345899999999999999
Q ss_pred HHHHHHhhhhcc
Q 030233 169 GLDWLSNNISVK 180 (181)
Q Consensus 169 l~~~i~~~~~~~ 180 (181)
+|++|.+.+.++
T Consensus 157 l~~~l~~~~~~~ 168 (172)
T 2erx_A 157 LFQELLNLEKRR 168 (172)
T ss_dssp HHHHHHHTCCSS
T ss_pred HHHHHHHHHhhh
Confidence 999999988765
No 74
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.97 E-value=6.1e-31 Score=181.17 Aligned_cols=159 Identities=22% Similarity=0.353 Sum_probs=126.8
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEE--EEEECC--eEEEEEEcCCChhhHHHHHhhccCCCEEE
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVE--AVEYKN--KSFCVWDVGGQNKIRALWRHYFRDTLGLT 89 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~--~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~d~ii 89 (181)
.+.++|+++|++|+|||||++++.++.+. .+.++.+.+.. .+.+.+ ..+.+|||||++.+...+..+++.+|+++
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi 85 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGII 85 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEEE
Confidence 45689999999999999999999998854 44566665443 444444 58999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhhCccccCCccEEEEEeeccCCCCHH
Q 030233 90 FVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVM--PTAEVADKLELYSLGQRRWSIQSCSAISGQGLY 167 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (181)
+|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.+.. ..++..... ...+++++++||++|+|++
T Consensus 86 lv~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~g~gi~ 159 (206)
T 2bcg_Y 86 IVYDVTDQESFNGVKMWLQEIDRYA-TSTVLKLLVGNKCDLKDKRVVEYDVAKEFA-----DANKMPFLETSALDSTNVE 159 (206)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHH-----HHTTCCEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHH-----HHcCCeEEEEeCCCCCCHH
Confidence 9999999999999999888775542 2579999999999997632 233333322 1234579999999999999
Q ss_pred HHHHHHHhhhhc
Q 030233 168 EGLDWLSNNISV 179 (181)
Q Consensus 168 ~l~~~i~~~~~~ 179 (181)
++|++|.+.+.+
T Consensus 160 ~l~~~l~~~i~~ 171 (206)
T 2bcg_Y 160 DAFLTMARQIKE 171 (206)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988754
No 75
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.97 E-value=8.7e-32 Score=186.95 Aligned_cols=161 Identities=22% Similarity=0.281 Sum_probs=126.4
Q ss_pred CCCccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEEEEEE--C--C-eEEEEEEcCCChhhHHHHHhhccCCCE
Q 030233 14 PQCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVEAVEY--K--N-KSFCVWDVGGQNKIRALWRHYFRDTLG 87 (181)
Q Consensus 14 ~~~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~~~~~--~--~-~~~~i~d~~g~~~~~~~~~~~~~~~d~ 87 (181)
+...++|+++|++|+|||||+++++++.+. .+.++.+........ . . ..+.+|||||++.+...+..++..+|+
T Consensus 8 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 87 (218)
T 4djt_A 8 RELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASG 87 (218)
T ss_dssp --CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSE
T ss_pred ccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCE
Confidence 346799999999999999999999987754 446777766555444 1 1 789999999999998888899999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhhCccccCCccEEEEEeeccCCCC
Q 030233 88 LTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV--MPTAEVADKLELYSLGQRRWSIQSCSAISGQG 165 (181)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (181)
+++|+|++++.++.....|+..+.... ..+.|+++|+||+|+.+. ...+...... ...+++++++||++|.|
T Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~g~g 161 (218)
T 4djt_A 88 AILFFDVTSRITCQNLARWVKEFQAVV-GNEAPIVVCANKIDIKNRQKISKKLVMEVL-----KGKNYEYFEISAKTAHN 161 (218)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHH-CSSSCEEEEEECTTCC----CCHHHHHHHT-----TTCCCEEEEEBTTTTBT
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHH-----HHcCCcEEEEecCCCCC
Confidence 999999999999999888887775432 246899999999998753 2222222222 33556899999999999
Q ss_pred HHHHHHHHHhhhhcc
Q 030233 166 LYEGLDWLSNNISVK 180 (181)
Q Consensus 166 i~~l~~~i~~~~~~~ 180 (181)
++++|++|.+.+.++
T Consensus 162 v~~l~~~l~~~~~~~ 176 (218)
T 4djt_A 162 FGLPFLHLARIFTGR 176 (218)
T ss_dssp TTHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999999987654
No 76
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.97 E-value=1.8e-31 Score=183.79 Aligned_cols=160 Identities=18% Similarity=0.192 Sum_probs=96.4
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhcC--Ccc-cccCccce--eEEEEEEC----CeEEEEEEcCCChhhHHHHHhhccCC
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKLG--EIV-TTTPTIGF--NVEAVEYK----NKSFCVWDVGGQNKIRALWRHYFRDT 85 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~~--~~~-~~~~~~~~--~~~~~~~~----~~~~~i~d~~g~~~~~~~~~~~~~~~ 85 (181)
...++|+++|++|+|||||++++++. .+. .+.+|.+. ....+.+. ...+.+|||||++.+...+..+++.+
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 97 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV 97 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence 46789999999999999999999988 543 55666663 33445554 56899999999999999999999999
Q ss_pred CEEEEEEECCCcccHHHHHHHHHHHHcCCC--CCCCeEEEEEeCCCCCC---CCCHHHHHhhhCccccCCccEEEEEeec
Q 030233 86 LGLTFVVDSSDRERISEARNELHQILSDNE--LSNAALLVFANKQDLPN---VMPTAEVADKLELYSLGQRRWSIQSCSA 160 (181)
Q Consensus 86 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~piilv~nK~D~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (181)
|++++|+|++++.++..+..|+..+..... ..+.|+++|+||+|+.+ ....++...... ..+++++++||
T Consensus 98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa 172 (208)
T 2yc2_C 98 YYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWAT-----TNTLDFFDVSA 172 (208)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHH-----HTTCEEEECCC
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHH-----HcCCEEEEecc
Confidence 999999999999999999999888866432 25799999999999975 233344433321 23358999999
Q ss_pred cC-CCCHHHHHHHHHhhhhc
Q 030233 161 IS-GQGLYEGLDWLSNNISV 179 (181)
Q Consensus 161 ~~-~~~i~~l~~~i~~~~~~ 179 (181)
++ |.|++++|++|.+.+.+
T Consensus 173 ~~~~~gi~~l~~~i~~~~~~ 192 (208)
T 2yc2_C 173 NPPGKDADAPFLSIATTFYR 192 (208)
T ss_dssp -------CHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHH
Confidence 99 99999999999987654
No 77
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.97 E-value=2.7e-31 Score=180.45 Aligned_cols=162 Identities=14% Similarity=0.142 Sum_probs=120.8
Q ss_pred CCCCccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEE-EEEE--CCeEEEEEEcCCChhhHHHHHhhccCCCEE
Q 030233 13 FPQCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVE-AVEY--KNKSFCVWDVGGQNKIRALWRHYFRDTLGL 88 (181)
Q Consensus 13 ~~~~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~-~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~d~i 88 (181)
.+.+.++|+++|++|+|||||+++++++.+. .+.+|.+.... .+.. ....+.+|||||++.+... ..+++.+|++
T Consensus 17 ~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~ 95 (187)
T 3c5c_A 17 QGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAF 95 (187)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEE
T ss_pred CCCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEE
Confidence 4457899999999999999999999988854 45667765542 2333 3467899999999887764 5688999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHcCC--CCCCCeEEEEEeCCCCCCC--CCHHHHHhhhCccccCCccEEEEEeec-cCC
Q 030233 89 TFVVDSSDRERISEARNELHQILSDN--ELSNAALLVFANKQDLPNV--MPTAEVADKLELYSLGQRRWSIQSCSA-ISG 163 (181)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~piilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa-~~~ 163 (181)
++|||+++++++..+..|+..+.... ...+.|+++|+||+|+... ...++..... ...+++++++|| ++|
T Consensus 96 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~e~Sa~~~g 170 (187)
T 3c5c_A 96 LVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALA-----GRFGCLFFEVSACLDF 170 (187)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHH-----HHHTCEEEECCSSSCS
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHH-----HHcCCcEEEEeecCcc
Confidence 99999999999999999888876531 1147999999999998642 2333333322 123458999999 899
Q ss_pred CCHHHHHHHHHhhhhcc
Q 030233 164 QGLYEGLDWLSNNISVK 180 (181)
Q Consensus 164 ~~i~~l~~~i~~~~~~~ 180 (181)
+|++++|+++.+.+.++
T Consensus 171 ~gv~~lf~~l~~~i~~~ 187 (187)
T 3c5c_A 171 EHVQHVFHEAVREARRE 187 (187)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred ccHHHHHHHHHHHHhhC
Confidence 99999999999988653
No 78
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.97 E-value=8.2e-32 Score=187.50 Aligned_cols=161 Identities=23% Similarity=0.343 Sum_probs=129.6
Q ss_pred CCCCccEEEEEcCCCCChHHHHHhhhcCCc-ccccCccceeEEEEEE----CCeEEEEEEcCCChhhHHHHHhhccCCCE
Q 030233 13 FPQCRIKLLMVGLDASGKTTILYKMKLGEI-VTTTPTIGFNVEAVEY----KNKSFCVWDVGGQNKIRALWRHYFRDTLG 87 (181)
Q Consensus 13 ~~~~~~~i~~~G~~~~GKssl~~~~~~~~~-~~~~~~~~~~~~~~~~----~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ 87 (181)
.+...++|+++|++|+|||||+++++.+.+ ..+.++.+.+...... ....+.+|||||++.+...+..+++.+|+
T Consensus 11 ~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 90 (221)
T 3gj0_A 11 EPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQC 90 (221)
T ss_dssp CCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCE
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCE
Confidence 456789999999999999999999776653 4557777766665443 45789999999999999889999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCCCHH
Q 030233 88 LTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLY 167 (181)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (181)
+++|||++++.++..+..|+..+.... .+.|+++|+||+|+.+.....+. .......+++++++||++|.|++
T Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~-----~~~~~~~~~~~~~~Sa~~~~gi~ 163 (221)
T 3gj0_A 91 AIIMFDVTSRVTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKDRKVKAKS-----IVFHRKKNLQYYDISAKSNYNFE 163 (221)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHS--TTCCEEEEEECTTSSSCSSCGGG-----CCHHHHHTCEEEECBGGGTBTTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECCccccccccHHH-----HHHHHHcCCEEEEEeCCCCCCHH
Confidence 999999999999999999888886642 47999999999999764332211 11123345689999999999999
Q ss_pred HHHHHHHhhhhcc
Q 030233 168 EGLDWLSNNISVK 180 (181)
Q Consensus 168 ~l~~~i~~~~~~~ 180 (181)
++|++|.+.+...
T Consensus 164 ~l~~~l~~~l~~~ 176 (221)
T 3gj0_A 164 KPFLWLARKLIGD 176 (221)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhC
Confidence 9999999987653
No 79
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=8.7e-31 Score=179.30 Aligned_cols=161 Identities=15% Similarity=0.178 Sum_probs=124.6
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEEE-EEEC--CeEEEEEEcCCChhhHHHHHhhccCCCEEEE
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVEA-VEYK--NKSFCVWDVGGQNKIRALWRHYFRDTLGLTF 90 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~~-~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~ 90 (181)
...++|+++|++|+|||||+++++++.+. .+.++.+.+... +... ...+.+|||||++.+...+..+++.+|++++
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 85 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFIL 85 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEEE
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccceeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEEE
Confidence 35789999999999999999999988754 345666644433 2233 4579999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHcCCC-CCCCeEEEEEeCCCCCCCC-CHHHHHhhhCccccCCccEEEEEeeccCCCCHHH
Q 030233 91 VVDSSDRERISEARNELHQILSDNE-LSNAALLVFANKQDLPNVM-PTAEVADKLELYSLGQRRWSIQSCSAISGQGLYE 168 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (181)
|||++++.++.....|+..+..... ..+.|+++|+||+|+.+.. ..++..... ...+++++++||++|+|+++
T Consensus 86 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~ 160 (199)
T 2gf0_A 86 VFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAVA-----QEWKCAFMETSAKMNYNVKE 160 (199)
T ss_dssp EEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHHHH-----HHHTCEEEECBTTTTBSHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHHHH-----HHhCCeEEEEecCCCCCHHH
Confidence 9999999999888887766544211 2478999999999997532 223322221 12345799999999999999
Q ss_pred HHHHHHhhhhcc
Q 030233 169 GLDWLSNNISVK 180 (181)
Q Consensus 169 l~~~i~~~~~~~ 180 (181)
+|++|.+.+.++
T Consensus 161 l~~~l~~~~~~~ 172 (199)
T 2gf0_A 161 LFQELLTLETRR 172 (199)
T ss_dssp HHHHHHHHCSSS
T ss_pred HHHHHHHHHhhh
Confidence 999999987654
No 80
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.97 E-value=1.3e-30 Score=177.28 Aligned_cols=163 Identities=20% Similarity=0.251 Sum_probs=115.7
Q ss_pred CCCCccEEEEEcCCCCChHHHHHhhhcCCccc-ccCccceeEE-EEEECC--eEEEEEEcCCChhhHHHHHhhccCCCEE
Q 030233 13 FPQCRIKLLMVGLDASGKTTILYKMKLGEIVT-TTPTIGFNVE-AVEYKN--KSFCVWDVGGQNKIRALWRHYFRDTLGL 88 (181)
Q Consensus 13 ~~~~~~~i~~~G~~~~GKssl~~~~~~~~~~~-~~~~~~~~~~-~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~d~i 88 (181)
..++.++|+++|.+|+|||||+++++++.+.. +.++.+.... .+...+ ..+.+|||||++.+...+..+++.+|++
T Consensus 17 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 96 (190)
T 3con_A 17 QGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGF 96 (190)
T ss_dssp --CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----------CTTCSEE
T ss_pred cccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEE
Confidence 34577999999999999999999999887543 3445544332 344443 5699999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC-CCHHHHHhhhCccccCCccEEEEEeeccCCCCHH
Q 030233 89 TFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV-MPTAEVADKLELYSLGQRRWSIQSCSAISGQGLY 167 (181)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (181)
++|+|++++.++..+..|+..+.......+.|+++|+||+|+.+. ...++..+... ..+++++++||++|.|++
T Consensus 97 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~ 171 (190)
T 3con_A 97 LCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAK-----SYGIPFIETSAKTRQGVE 171 (190)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHH-----HHTCCEEECCTTTCTTHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHHHH-----HcCCeEEEEeCCCCCCHH
Confidence 999999999999998888877755433357999999999998753 23333333321 223479999999999999
Q ss_pred HHHHHHHhhhhcc
Q 030233 168 EGLDWLSNNISVK 180 (181)
Q Consensus 168 ~l~~~i~~~~~~~ 180 (181)
++|++|.+.+.++
T Consensus 172 ~l~~~l~~~~~~~ 184 (190)
T 3con_A 172 DAFYTLVREIRQY 184 (190)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887653
No 81
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.97 E-value=7.2e-31 Score=180.17 Aligned_cols=159 Identities=22% Similarity=0.340 Sum_probs=119.7
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeE--EEEEECC--eEEEEEEcCCChhhHHHHHhhccCCCEEE
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNV--EAVEYKN--KSFCVWDVGGQNKIRALWRHYFRDTLGLT 89 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~--~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~d~ii 89 (181)
.+.++|+++|++|+|||||+++++++.+. .+.++.+.+. ..+...+ ..+.+|||||++.+...+..+++.+|+++
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 102 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGAL 102 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEE
Confidence 35689999999999999999999988754 3456655443 3444554 78999999999988888889999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhhCccccCCccEEEEEeeccCCCCHH
Q 030233 90 FVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV--MPTAEVADKLELYSLGQRRWSIQSCSAISGQGLY 167 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (181)
+|+|++++.++..+..|+..+..... .+.|+++|+||+|+... ...++..... ...+++++++||++|+|++
T Consensus 103 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~SA~~g~gi~ 176 (200)
T 2o52_A 103 LVYDITSRETYNSLAAWLTDARTLAS-PNIVVILCGNKKDLDPEREVTFLEASRFA-----QENELMFLETSALTGENVE 176 (200)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHTC-TTCEEEEEEECGGGGGGCCSCHHHHHHHH-----HHTTCEEEEECTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEECCCcccccccCHHHHHHHH-----HHcCCEEEEEeCCCCCCHH
Confidence 99999999999999988887755322 57999999999998642 2233333322 2234689999999999999
Q ss_pred HHHHHHHhhhhc
Q 030233 168 EGLDWLSNNISV 179 (181)
Q Consensus 168 ~l~~~i~~~~~~ 179 (181)
++|++|.+.+.+
T Consensus 177 ~l~~~l~~~i~~ 188 (200)
T 2o52_A 177 EAFLKCARTILN 188 (200)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988754
No 82
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.97 E-value=7.4e-31 Score=180.74 Aligned_cols=162 Identities=17% Similarity=0.229 Sum_probs=125.6
Q ss_pred CCCccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEEEE--EEC--CeEEEEEEcCCChhhHHHHHhhccCCCEE
Q 030233 14 PQCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVEAV--EYK--NKSFCVWDVGGQNKIRALWRHYFRDTLGL 88 (181)
Q Consensus 14 ~~~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~~~--~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~d~i 88 (181)
+.+.++|+++|++|+|||||++++++..+. .+.++.+.+.... ... ...+.+|||||++.+...+..+++.+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 84 (207)
T 1vg8_A 5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCC 84 (207)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEE
Confidence 346799999999999999999999998754 4556666554443 333 36899999999999998888999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHcCC---CCCCCeEEEEEeCCCCCCCC-CHHHHHhhhCccccCCccEEEEEeeccCCC
Q 030233 89 TFVVDSSDRERISEARNELHQILSDN---ELSNAALLVFANKQDLPNVM-PTAEVADKLELYSLGQRRWSIQSCSAISGQ 164 (181)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~piilv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (181)
++|+|++++.++..+..|+..+.... ...+.|+++|+||+|+.... ..++...... ...+++++++||++|+
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~g~ 160 (207)
T 1vg8_A 85 VLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCY----SKNNIPYFETSAKEAI 160 (207)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHH----HTTSCCEEECBTTTTB
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHH----hcCCceEEEEeCCCCC
Confidence 99999999999998888887765432 12478999999999997432 3333333221 1244579999999999
Q ss_pred CHHHHHHHHHhhhhc
Q 030233 165 GLYEGLDWLSNNISV 179 (181)
Q Consensus 165 ~i~~l~~~i~~~~~~ 179 (181)
|++++|++|.+.+.+
T Consensus 161 gi~~l~~~l~~~~~~ 175 (207)
T 1vg8_A 161 NVEQAFQTIARNALK 175 (207)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999988754
No 83
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.97 E-value=1e-30 Score=180.79 Aligned_cols=160 Identities=20% Similarity=0.340 Sum_probs=124.3
Q ss_pred CCCccEEEEEcCCCCChHHHHHhhhcCCc-ccccCccceeE--EEEEECC--eEEEEEEcCCChhhHHHHHhhccCCCEE
Q 030233 14 PQCRIKLLMVGLDASGKTTILYKMKLGEI-VTTTPTIGFNV--EAVEYKN--KSFCVWDVGGQNKIRALWRHYFRDTLGL 88 (181)
Q Consensus 14 ~~~~~~i~~~G~~~~GKssl~~~~~~~~~-~~~~~~~~~~~--~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~d~i 88 (181)
....++|+++|++|+|||||++++++..+ ....++.+.+. ..+...+ ..+.+|||||++.+...+..+++.+|++
T Consensus 17 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 96 (213)
T 3cph_A 17 YDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGI 96 (213)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEE
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEE
Confidence 34578999999999999999999998875 34556666443 3455555 6899999999999988888999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC-CHHHHHhhhCccccCCccEEEEEeeccCCCCHH
Q 030233 89 TFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVM-PTAEVADKLELYSLGQRRWSIQSCSAISGQGLY 167 (181)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (181)
++|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.... ..++..... ...+++++++||++|.|++
T Consensus 97 i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~ 170 (213)
T 3cph_A 97 ILVYDVTDERTFTNIKQWFKTVNEHA-NDEAQLLLVGNKSDMETRVVTADQGEALA-----KELGIPFIESSAKNDDNVN 170 (213)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHT-TTCSEEEEEEECTTCSSCCSCHHHHHHHH-----HHHTCCEEECBTTTTBSSH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCcccccCHHHHHHHH-----HHcCCEEEEEeCCCCCCHH
Confidence 99999999999999888887776542 2478999999999985322 223332222 1123479999999999999
Q ss_pred HHHHHHHhhhhc
Q 030233 168 EGLDWLSNNISV 179 (181)
Q Consensus 168 ~l~~~i~~~~~~ 179 (181)
++|++|.+.+.+
T Consensus 171 ~l~~~l~~~~~~ 182 (213)
T 3cph_A 171 EIFFTLAKLIQE 182 (213)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999987754
No 84
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.97 E-value=1.2e-30 Score=176.73 Aligned_cols=161 Identities=19% Similarity=0.210 Sum_probs=122.2
Q ss_pred CCCccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEE-EEEE--CCeEEEEEEcCCChhhHHHHHhhccCCCEEE
Q 030233 14 PQCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVE-AVEY--KNKSFCVWDVGGQNKIRALWRHYFRDTLGLT 89 (181)
Q Consensus 14 ~~~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~-~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii 89 (181)
+...++|+++|++|+|||||+++++++.+. .+.+|.+.... .+.. ....+.+|||||++.+...+..+++.+|+++
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 83 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 83 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEE
Confidence 456799999999999999999999998764 34666665443 2333 3468999999999999999999999999999
Q ss_pred EEEECCCcccHHHH-HHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--------------CCHHHHHhhhCccccCCccEE
Q 030233 90 FVVDSSDRERISEA-RNELHQILSDNELSNAALLVFANKQDLPNV--------------MPTAEVADKLELYSLGQRRWS 154 (181)
Q Consensus 90 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~D~~~~--------------~~~~~~~~~~~~~~~~~~~~~ 154 (181)
+|||+++++++..+ ..|+..+.... ++.|+++|+||+|+.+. .+.++....... ....+
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~----~~~~~ 157 (184)
T 1m7b_A 84 ICFDISRPETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQ----IGAAT 157 (184)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC--TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHH----HTCSE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHC--CCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHH----cCCcE
Confidence 99999999999988 56666554321 57999999999998642 222222222111 11247
Q ss_pred EEEeecc-CCCCHHHHHHHHHhhhhcc
Q 030233 155 IQSCSAI-SGQGLYEGLDWLSNNISVK 180 (181)
Q Consensus 155 ~~~~Sa~-~~~~i~~l~~~i~~~~~~~ 180 (181)
++++||+ +|+|++++|+++.+.+.++
T Consensus 158 ~~e~Sa~~~~~gi~~l~~~i~~~~l~k 184 (184)
T 1m7b_A 158 YIECSALQSENSVRDIFHVATLACVNK 184 (184)
T ss_dssp EEECBTTTBHHHHHHHHHHHHHHHHTC
T ss_pred EEEeeecCCCcCHHHHHHHHHHHHhcC
Confidence 9999999 6899999999999987653
No 85
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.3e-31 Score=185.50 Aligned_cols=161 Identities=24% Similarity=0.382 Sum_probs=121.8
Q ss_pred CCCccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeE--EEEEECC--eEEEEEEcCCChhhHHHHHhhccCCCEE
Q 030233 14 PQCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNV--EAVEYKN--KSFCVWDVGGQNKIRALWRHYFRDTLGL 88 (181)
Q Consensus 14 ~~~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~--~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~d~i 88 (181)
....++|+++|++|+|||||++++++..+. .+.++.+.+. ..+...+ ..+.+|||||++.+...+..+++.+|++
T Consensus 10 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~v 89 (223)
T 3cpj_B 10 YDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGA 89 (223)
T ss_dssp CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEE
T ss_pred CCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEE
Confidence 355789999999999999999999998864 4456666443 3455555 6899999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhhCccccCCccEEEEEeeccCCCCH
Q 030233 89 TFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV--MPTAEVADKLELYSLGQRRWSIQSCSAISGQGL 166 (181)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 166 (181)
|+|||++++.++..+..|+..+.... ..+.|+++|+||+|+.+. ...++..... ...+++++++||++|+|+
T Consensus 90 ilV~D~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi 163 (223)
T 3cpj_B 90 LIVYDISKSSSYENCNHWLSELRENA-DDNVAVGLIGNKSDLAHLRAVPTEESKTFA-----QENQLLFTETSALNSENV 163 (223)
T ss_dssp EEEEC-CCHHHHHHHHHHHHHHHHHC-C--CEEEEEECCGGGGGGCCSCHHHHHHHH-----HHTTCEEEECCCC-CCCH
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccccCHHHHHHHH-----HHcCCEEEEEeCCCCCCH
Confidence 99999999999999998888775542 257899999999998642 2333333322 223458999999999999
Q ss_pred HHHHHHHHhhhhcc
Q 030233 167 YEGLDWLSNNISVK 180 (181)
Q Consensus 167 ~~l~~~i~~~~~~~ 180 (181)
+++|++|.+.+.++
T Consensus 164 ~~l~~~l~~~i~~~ 177 (223)
T 3cpj_B 164 DKAFEELINTIYQK 177 (223)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999887653
No 86
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=2.3e-30 Score=176.67 Aligned_cols=158 Identities=17% Similarity=0.151 Sum_probs=122.4
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEE-EEEECC--eEEEEEEcCCChhhHHHHHhhccCCCEEEE
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVE-AVEYKN--KSFCVWDVGGQNKIRALWRHYFRDTLGLTF 90 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~-~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~ 90 (181)
.+.++|+++|++|+|||||+++++++.+. .+.+|.+.... .+...+ ..+.+|||||++.+...+..+++.+|++++
T Consensus 16 ~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 95 (194)
T 2atx_A 16 ALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLI 95 (194)
T ss_dssp EEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEEE
Confidence 35689999999999999999999988754 44566654442 344443 789999999999999999999999999999
Q ss_pred EEECCCcccHHHHH-HHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--------------CHHHHHhhhCccccCCccE-E
Q 030233 91 VVDSSDRERISEAR-NELHQILSDNELSNAALLVFANKQDLPNVM--------------PTAEVADKLELYSLGQRRW-S 154 (181)
Q Consensus 91 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~nK~D~~~~~--------------~~~~~~~~~~~~~~~~~~~-~ 154 (181)
|||+++++++.... .|+..+.... ++.|+++|+||+|+.+.. ..++..... ...+. +
T Consensus 96 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~~~~~ 168 (194)
T 2atx_A 96 CFSVVNPASFQNVKEEWVPELKEYA--PNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLA-----KEIGACC 168 (194)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHS--TTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHH-----HHHTCSC
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHH-----HHcCCcE
Confidence 99999999999987 5666665432 479999999999997531 112221111 11222 6
Q ss_pred EEEeeccCCCCHHHHHHHHHhhhhc
Q 030233 155 IQSCSAISGQGLYEGLDWLSNNISV 179 (181)
Q Consensus 155 ~~~~Sa~~~~~i~~l~~~i~~~~~~ 179 (181)
++++||++|+|++++|+++.+.+..
T Consensus 169 ~~~~Sa~~g~gi~~l~~~l~~~i~~ 193 (194)
T 2atx_A 169 YVECSALTQKGLKTVFDEAIIAILT 193 (194)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred EEEeeCCCCCCHHHHHHHHHHHHhc
Confidence 9999999999999999999988753
No 87
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.97 E-value=4.2e-30 Score=176.44 Aligned_cols=165 Identities=20% Similarity=0.237 Sum_probs=121.2
Q ss_pred CCCCccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeE-EEEEECC--eEEEEEEcCCChhhHHHHHhhccCCCEE
Q 030233 13 FPQCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNV-EAVEYKN--KSFCVWDVGGQNKIRALWRHYFRDTLGL 88 (181)
Q Consensus 13 ~~~~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~-~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~d~i 88 (181)
++...++|+++|++|+|||||+++++++.+. .+.++.+... ..+...+ ..+.+|||||++.+...+..+++.+|++
T Consensus 21 m~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 100 (201)
T 2gco_A 21 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVI 100 (201)
T ss_dssp -CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEE
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEEEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEE
Confidence 4456799999999999999999999988754 3455655443 2344444 5899999999999999999999999999
Q ss_pred EEEEECCCcccHHHHH-HHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhC---------ccccCCccE-EEEE
Q 030233 89 TFVVDSSDRERISEAR-NELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLE---------LYSLGQRRW-SIQS 157 (181)
Q Consensus 89 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~---------~~~~~~~~~-~~~~ 157 (181)
++|||+++++++.... .|+..+... .++.|+++|+||+|+.+.....+...... ...+...+. ++++
T Consensus 101 i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 178 (201)
T 2gco_A 101 LMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLE 178 (201)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHH--STTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEE
Confidence 9999999999999984 455544332 14799999999999976421111110000 000011222 7999
Q ss_pred eeccCCCCHHHHHHHHHhhhhc
Q 030233 158 CSAISGQGLYEGLDWLSNNISV 179 (181)
Q Consensus 158 ~Sa~~~~~i~~l~~~i~~~~~~ 179 (181)
+||++|+|++++|++|.+.+.+
T Consensus 179 ~SA~~g~gi~~l~~~i~~~~l~ 200 (201)
T 2gco_A 179 CSAKTKEGVREVFEMATRAGLQ 200 (201)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHC
T ss_pred eeCCCCCCHHHHHHHHHHHHhc
Confidence 9999999999999999987653
No 88
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.97 E-value=2.6e-30 Score=177.88 Aligned_cols=164 Identities=21% Similarity=0.234 Sum_probs=118.2
Q ss_pred hCCCCccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEE-EEEE--CCeEEEEEEcCCChhhHHHHHhhccCCCE
Q 030233 12 FFPQCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVE-AVEY--KNKSFCVWDVGGQNKIRALWRHYFRDTLG 87 (181)
Q Consensus 12 ~~~~~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~-~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ 87 (181)
...++.++|+++|++|+|||||+++++++.+. .+.++.+.... .+.. ....+.+|||||++.+...+..+++.+|+
T Consensus 25 ~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 104 (204)
T 4gzl_A 25 YFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDV 104 (204)
T ss_dssp -----CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred hhcCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCE
Confidence 34567899999999999999999999988754 44555543332 2333 34567799999999999999999999999
Q ss_pred EEEEEECCCcccHHHHH-HHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCcc---------cc-CCccEEEE
Q 030233 88 LTFVVDSSDRERISEAR-NELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELY---------SL-GQRRWSIQ 156 (181)
Q Consensus 88 ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~---------~~-~~~~~~~~ 156 (181)
+++|||++++.++.... .|+..+.... .+.|+++|+||+|+.+.....+........ .. .....+++
T Consensus 105 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 182 (204)
T 4gzl_A 105 FLICFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYL 182 (204)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHC--SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEE
Confidence 99999999999999987 5655554432 579999999999987532211111111000 00 11224699
Q ss_pred EeeccCCCCHHHHHHHHHhhh
Q 030233 157 SCSAISGQGLYEGLDWLSNNI 177 (181)
Q Consensus 157 ~~Sa~~~~~i~~l~~~i~~~~ 177 (181)
++||++|+|++++|+++.+.+
T Consensus 183 ~~SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 183 ECSALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp ECCTTTCTTHHHHHHHHHHTT
T ss_pred EeeCCCCCCHHHHHHHHHHHh
Confidence 999999999999999998865
No 89
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.97 E-value=2.5e-30 Score=175.09 Aligned_cols=164 Identities=20% Similarity=0.204 Sum_probs=121.3
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEE-EEEEC--CeEEEEEEcCCChhhHHHHHhhccCCCEEEE
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVE-AVEYK--NKSFCVWDVGGQNKIRALWRHYFRDTLGLTF 90 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~-~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~ 90 (181)
++.++|+++|++|+|||||+++++++.+. .+.++.+.... .+... ...+.+|||||++.+...+..+++.+|++++
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 82 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI 82 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEE
Confidence 56799999999999999999999987754 34555554332 23333 3567799999999999999999999999999
Q ss_pred EEECCCcccHHHHH-HHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhC---------ccccCCcc-EEEEEee
Q 030233 91 VVDSSDRERISEAR-NELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLE---------LYSLGQRR-WSIQSCS 159 (181)
Q Consensus 91 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~---------~~~~~~~~-~~~~~~S 159 (181)
|+|++++.++.... .|+..+.... ++.|+++|+||+|+.+.....+...... ...+...+ .+++++|
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 160 (186)
T 1mh1_A 83 CFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 160 (186)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHS--TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEECCChhhHHHHHHHHHHHHHHhC--CCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEec
Confidence 99999999999987 5666654432 3799999999999865321111100000 00011123 3899999
Q ss_pred ccCCCCHHHHHHHHHhhhhcc
Q 030233 160 AISGQGLYEGLDWLSNNISVK 180 (181)
Q Consensus 160 a~~~~~i~~l~~~i~~~~~~~ 180 (181)
|++|+|++++|+++.+.+.+.
T Consensus 161 a~~g~gi~~l~~~l~~~~~~~ 181 (186)
T 1mh1_A 161 ALTQRGLKTVFDEAIRAVLCP 181 (186)
T ss_dssp TTTCTTHHHHHHHHHHHHSCC
T ss_pred CCCccCHHHHHHHHHHHHhcc
Confidence 999999999999999987653
No 90
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=2.4e-30 Score=178.42 Aligned_cols=167 Identities=21% Similarity=0.263 Sum_probs=120.3
Q ss_pred hCCCCccEEEEEcCCCCChHHHHHhhhcCCccc-ccCccceeEE-EEEECC--eEEEEEEcCCChhhHHHHHhhccCCCE
Q 030233 12 FFPQCRIKLLMVGLDASGKTTILYKMKLGEIVT-TTPTIGFNVE-AVEYKN--KSFCVWDVGGQNKIRALWRHYFRDTLG 87 (181)
Q Consensus 12 ~~~~~~~~i~~~G~~~~GKssl~~~~~~~~~~~-~~~~~~~~~~-~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~d~ 87 (181)
++++.+++|+++|++|+|||||+++++++.+.. +.++.+.... .+...+ ..+.+|||||++.+...+..+++.+|+
T Consensus 20 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 99 (207)
T 2fv8_A 20 FQSMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDV 99 (207)
T ss_dssp GGGSEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCE
T ss_pred cccccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCE
Confidence 445678999999999999999999999987543 4456554432 244444 689999999999999899999999999
Q ss_pred EEEEEECCCcccHHHHH-HHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCcc---------ccCCcc-EEEE
Q 030233 88 LTFVVDSSDRERISEAR-NELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELY---------SLGQRR-WSIQ 156 (181)
Q Consensus 88 ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~---------~~~~~~-~~~~ 156 (181)
+++|+|+++++++.... .|+..+... .++.|+++|+||+|+.+.....+........ .+...+ .+++
T Consensus 100 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 177 (207)
T 2fv8_A 100 ILMCFSVDSPDSLENIPEKWVPEVKHF--CPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYL 177 (207)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHH--STTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEE
Confidence 99999999999999884 555555432 1579999999999987532211111111000 001112 2799
Q ss_pred EeeccCCCCHHHHHHHHHhhhhcc
Q 030233 157 SCSAISGQGLYEGLDWLSNNISVK 180 (181)
Q Consensus 157 ~~Sa~~~~~i~~l~~~i~~~~~~~ 180 (181)
++||++|+|++++|++|.+.+.++
T Consensus 178 ~~SA~~g~gi~el~~~l~~~i~~~ 201 (207)
T 2fv8_A 178 ECSAKTKEGVREVFETATRAALQK 201 (207)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHSC
T ss_pred EeeCCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999987654
No 91
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.97 E-value=2.7e-30 Score=179.09 Aligned_cols=164 Identities=16% Similarity=0.170 Sum_probs=104.7
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEE-EEEEC--CeEEEEEEcCCChhhHHHHHhhccCCCEEEE
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVE-AVEYK--NKSFCVWDVGGQNKIRALWRHYFRDTLGLTF 90 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~-~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~ 90 (181)
.+.++|+++|++|+|||||+++++++.+. .+.+|.+.... .+... ...+.+|||||++.+...+..+++.+|++++
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 111 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLL 111 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEEEEEEEETTEEEEEEEEEC---------------CEEEEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEEE
Confidence 46799999999999999999999988754 34555554332 23343 3579999999999999999999999999999
Q ss_pred EEECCCcccHHHHH-HHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhC---------ccccCCccE-EEEEee
Q 030233 91 VVDSSDRERISEAR-NELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLE---------LYSLGQRRW-SIQSCS 159 (181)
Q Consensus 91 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~---------~~~~~~~~~-~~~~~S 159 (181)
|||++++.++..+. .|+..+.... .+.|+++|+||+|+.......+...... ...+...+. +++++|
T Consensus 112 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 189 (214)
T 2j1l_A 112 CFDVTSPNSFDNIFNRWYPEVNHFC--KKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECS 189 (214)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHC--SSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECB
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEec
Confidence 99999999999987 5666654432 5789999999999976322111110000 000111233 899999
Q ss_pred ccCCCCHHHHHHHHHhhhhcc
Q 030233 160 AISGQGLYEGLDWLSNNISVK 180 (181)
Q Consensus 160 a~~~~~i~~l~~~i~~~~~~~ 180 (181)
|++|+|++++|++|.+.+.+.
T Consensus 190 A~~g~gi~el~~~l~~~~~~~ 210 (214)
T 2j1l_A 190 ARLHDNVHAVFQEAAEVALSS 210 (214)
T ss_dssp TTTTBSHHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999987654
No 92
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.97 E-value=1.7e-30 Score=178.22 Aligned_cols=161 Identities=17% Similarity=0.155 Sum_probs=117.0
Q ss_pred hCCCCccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEE-EEEECC--eEEEEEEcCCChhhHHHHHhhccCCCE
Q 030233 12 FFPQCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVE-AVEYKN--KSFCVWDVGGQNKIRALWRHYFRDTLG 87 (181)
Q Consensus 12 ~~~~~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~-~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~d~ 87 (181)
..+.+.++|+++|++|+|||||+++++++.+. .+.+|.+.... .+...+ ..+.+|||||++.+...+..+++.+|+
T Consensus 15 ~~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 94 (201)
T 2q3h_A 15 GAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDI 94 (201)
T ss_dssp -----CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSE
T ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcE
Confidence 34567899999999999999999999988754 44566654433 344444 577899999999999889999999999
Q ss_pred EEEEEECCCcccHHHHH-HHHHHHHcCCCCCCCeEEEEEeCCCCCCC--------------CCHHHHHhhhCccccCCcc
Q 030233 88 LTFVVDSSDRERISEAR-NELHQILSDNELSNAALLVFANKQDLPNV--------------MPTAEVADKLELYSLGQRR 152 (181)
Q Consensus 88 ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~nK~D~~~~--------------~~~~~~~~~~~~~~~~~~~ 152 (181)
+++|||+++++++.... .|+..+.... ++.|+++|+||+|+.+. ...++..... ...+
T Consensus 95 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~~ 167 (201)
T 2q3h_A 95 FLLCFSVVSPSSFQNVSEKWVPEIRCHC--PKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLA-----EEIK 167 (201)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHC--SSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHH-----HHHT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHH-----HhcC
Confidence 99999999999999987 5766665432 47999999999998642 1122222211 1122
Q ss_pred -EEEEEeeccCCCCHHHHHHHHHhhhhc
Q 030233 153 -WSIQSCSAISGQGLYEGLDWLSNNISV 179 (181)
Q Consensus 153 -~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 179 (181)
.+++++||++|+|++++|+++.+.+.+
T Consensus 168 ~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 195 (201)
T 2q3h_A 168 AASYIECSALTQKNLKEVFDAAIVAGIQ 195 (201)
T ss_dssp CSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred CcEEEEEecCCCCCHHHHHHHHHHHHhc
Confidence 379999999999999999999988754
No 93
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.97 E-value=1.2e-30 Score=180.44 Aligned_cols=160 Identities=18% Similarity=0.156 Sum_probs=122.3
Q ss_pred CCCccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEE-EEEEC--CeEEEEEEcCCChhhHHHHHhhccCCCEEE
Q 030233 14 PQCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVE-AVEYK--NKSFCVWDVGGQNKIRALWRHYFRDTLGLT 89 (181)
Q Consensus 14 ~~~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~-~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii 89 (181)
..+.++|+++|++|+|||||+++++++.+. .+.+|.+.... .+... ...+.+|||||++.+...+..+++.+|+++
T Consensus 6 ~~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 85 (212)
T 2j0v_A 6 VSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFV 85 (212)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEE
T ss_pred cCceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEE
Confidence 456799999999999999999999988754 45566665443 23333 368999999999999999999999999999
Q ss_pred EEEECCCcccHHHHH-HHHHHHHcCCCCCCCeEEEEEeCCCCCCCC----------CHHHHHhhhCccccCCcc-EEEEE
Q 030233 90 FVVDSSDRERISEAR-NELHQILSDNELSNAALLVFANKQDLPNVM----------PTAEVADKLELYSLGQRR-WSIQS 157 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~nK~D~~~~~----------~~~~~~~~~~~~~~~~~~-~~~~~ 157 (181)
+|||+++++++.... .|+..+.... ++.|+++|+||+|+.+.. ..++..... ...+ .++++
T Consensus 86 lv~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~-----~~~~~~~~~~ 158 (212)
T 2j0v_A 86 LAFSLISKASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELR-----KQIGAAAYIE 158 (212)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC--TTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHH-----HHHTCSEEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHH-----HHcCCceEEE
Confidence 999999999999987 5666664432 479999999999986532 222222211 1122 37999
Q ss_pred eeccCCCCHHHHHHHHHhhhhcc
Q 030233 158 CSAISGQGLYEGLDWLSNNISVK 180 (181)
Q Consensus 158 ~Sa~~~~~i~~l~~~i~~~~~~~ 180 (181)
+||++|+|++++|+++.+.+.++
T Consensus 159 ~Sa~~g~gi~~l~~~l~~~~~~~ 181 (212)
T 2j0v_A 159 CSSKTQQNVKAVFDTAIKVVLQP 181 (212)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHCC
T ss_pred ccCCCCCCHHHHHHHHHHHHhhh
Confidence 99999999999999999887653
No 94
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.97 E-value=5.7e-31 Score=180.10 Aligned_cols=162 Identities=18% Similarity=0.215 Sum_probs=116.1
Q ss_pred CCCCccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEE--E---ECCeEEEEEEcCCChhhHHHH---HhhccC
Q 030233 13 FPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAV--E---YKNKSFCVWDVGGQNKIRALW---RHYFRD 84 (181)
Q Consensus 13 ~~~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~~i~d~~g~~~~~~~~---~~~~~~ 84 (181)
.+++.++|+++|++|+|||||++++.+............+...+ . .....+.+|||||++.+.... ..+++.
T Consensus 16 ~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~ 95 (196)
T 3llu_A 16 FQGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRG 95 (196)
T ss_dssp ----CCEEEEEESTTSSHHHHHHHHHSCCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHHHT
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHHhcCCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhccccccc
Confidence 34578999999999999999999988765443322222222222 2 255799999999999987776 789999
Q ss_pred CCEEEEEEECCCc--ccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC----HHHHHhhhCcccc----CCccEE
Q 030233 85 TLGLTFVVDSSDR--ERISEARNELHQILSDNELSNAALLVFANKQDLPNVMP----TAEVADKLELYSL----GQRRWS 154 (181)
Q Consensus 85 ~d~ii~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~----~~~~~~~~~~~~~----~~~~~~ 154 (181)
+|++|+|||++++ +++.....|+..+... ..+.|+++|+||+|+.+... .+.+........+ ...+++
T Consensus 96 ~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 173 (196)
T 3llu_A 96 TGALIYVIDAQDDYMEALTRLHITVSKAYKV--NPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLS 173 (196)
T ss_dssp CSEEEEEEETTSCCHHHHHHHHHHHHHHHHH--CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSCEE
T ss_pred CCEEEEEEECCCchHHHHHHHHHHHHHHHhc--CCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCCcc
Confidence 9999999999987 6677777777766432 25899999999999875221 1222222211111 256789
Q ss_pred EEEeeccCCCCHHHHHHHHHhhh
Q 030233 155 IQSCSAISGQGLYEGLDWLSNNI 177 (181)
Q Consensus 155 ~~~~Sa~~~~~i~~l~~~i~~~~ 177 (181)
|+++||++ +|++++|+.+.+.+
T Consensus 174 ~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 174 FYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp EEEECTTS-THHHHHHHHHHHHT
T ss_pred eEEEEech-hhHHHHHHHHHHHh
Confidence 99999999 99999999998875
No 95
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.97 E-value=3.8e-30 Score=177.23 Aligned_cols=160 Identities=19% Similarity=0.210 Sum_probs=122.1
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhcCCccc-ccCccceeEE-EEEE--CCeEEEEEEcCCChhhHHHHHhhccCCCEEEE
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKLGEIVT-TTPTIGFNVE-AVEY--KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTF 90 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~~-~~~~~~~~~~-~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~ 90 (181)
.+.++|+++|++|+|||||++++++..+.. +.+|.+.... .+.. ....+.+|||||++.+...+..+++.+|++++
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~il 105 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI 105 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEEE
Confidence 457899999999999999999999988643 4566665443 2333 34789999999999999999999999999999
Q ss_pred EEECCCcccHHHH-HHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--------------CCHHHHHhhhCccccCCccEEE
Q 030233 91 VVDSSDRERISEA-RNELHQILSDNELSNAALLVFANKQDLPNV--------------MPTAEVADKLELYSLGQRRWSI 155 (181)
Q Consensus 91 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~D~~~~--------------~~~~~~~~~~~~~~~~~~~~~~ 155 (181)
|||+++++++..+ ..|+..+.... ++.|+++|+||+|+.+. ...++....... .....|
T Consensus 106 v~D~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~----~~~~~~ 179 (205)
T 1gwn_A 106 CFDISRPETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQ----IGAATY 179 (205)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHC--TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHH----HTCSEE
T ss_pred EEECCCHHHHHHHHHHHHHHHHHHC--CCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHH----cCCCEE
Confidence 9999999999988 56666664432 57999999999998642 122222221110 012479
Q ss_pred EEeecc-CCCCHHHHHHHHHhhhhcc
Q 030233 156 QSCSAI-SGQGLYEGLDWLSNNISVK 180 (181)
Q Consensus 156 ~~~Sa~-~~~~i~~l~~~i~~~~~~~ 180 (181)
++|||+ +|+|++++|+.+.+.+.++
T Consensus 180 ~e~SAk~~~~gv~~lf~~l~~~~l~~ 205 (205)
T 1gwn_A 180 IECSALQSENSVRDIFHVATLACVNK 205 (205)
T ss_dssp EECCTTTCHHHHHHHHHHHHHHHHHC
T ss_pred EEeeeccCCcCHHHHHHHHHHHHhhC
Confidence 999999 6899999999999887653
No 96
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.97 E-value=8.6e-31 Score=178.72 Aligned_cols=159 Identities=13% Similarity=0.133 Sum_probs=113.7
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhcCC--cccccCccceeE--EEEEECC--eEEEEEEcCCChh-hHHHHHhhccCCCE
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKLGE--IVTTTPTIGFNV--EAVEYKN--KSFCVWDVGGQNK-IRALWRHYFRDTLG 87 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~~~--~~~~~~~~~~~~--~~~~~~~--~~~~i~d~~g~~~-~~~~~~~~~~~~d~ 87 (181)
+..++|+++|++|+|||||++++++.. +....++++.+. ..+.+.+ ..+.+|||+|.+. +..+...+++.+|+
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~ 83 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA 83 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCE
Confidence 457899999999999999999999633 333333444332 3344544 4668999999765 34456667788999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhhCccccCCccEEEEEeeccCCCC
Q 030233 88 LTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV--MPTAEVADKLELYSLGQRRWSIQSCSAISGQG 165 (181)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (181)
+++|||++++++|.....|+..+.......+.|+++|+||+|+... ...++... .. ...+.++++|||++|+|
T Consensus 84 ~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~-~a----~~~~~~~~e~SA~~g~~ 158 (192)
T 2cjw_A 84 YLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRA-XA----VVFDXKFIETSAAVQHN 158 (192)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHH-HH----HHTTCEEEECBTTTTBS
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHH-HH----HHhCCceEEeccccCCC
Confidence 9999999999999999888877655333357999999999998642 22222111 11 12335799999999999
Q ss_pred HHHHHHHHHhhhh
Q 030233 166 LYEGLDWLSNNIS 178 (181)
Q Consensus 166 i~~l~~~i~~~~~ 178 (181)
++++|+++.+.+.
T Consensus 159 v~~lf~~l~~~~~ 171 (192)
T 2cjw_A 159 VKELFEGIVRQVR 171 (192)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998774
No 97
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.97 E-value=9.8e-31 Score=176.61 Aligned_cols=160 Identities=18% Similarity=0.157 Sum_probs=111.6
Q ss_pred CCCCccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEEE---EEECCeEEEEEEcCCChhhHHHHHhhccCCCEE
Q 030233 13 FPQCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVEA---VEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGL 88 (181)
Q Consensus 13 ~~~~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~i 88 (181)
.+++.++|+++|++|+|||||+++++++.+. .+.+|.+..... +......+.+|||||++.+...+..+++.+|++
T Consensus 4 ~~~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 83 (182)
T 3bwd_D 4 SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVF 83 (182)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CBCCCC-------CEEECCCC-CTTTTTGGGGGTTCSEE
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEE
Confidence 3467899999999999999999999988753 344555432221 222446678999999999999999999999999
Q ss_pred EEEEECCCcccHHHHH-HHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC------------HHHHHhhhCccccCCcc-EE
Q 030233 89 TFVVDSSDRERISEAR-NELHQILSDNELSNAALLVFANKQDLPNVMP------------TAEVADKLELYSLGQRR-WS 154 (181)
Q Consensus 89 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~nK~D~~~~~~------------~~~~~~~~~~~~~~~~~-~~ 154 (181)
++|+|+++++++.... .|+..+.... ++.|+++|+||+|+.+... .++..... ...+ .+
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~~~~~ 156 (182)
T 3bwd_D 84 ILAFSLISKASYENVSKKWIPELKHYA--PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELK-----KLIGAPA 156 (182)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC--TTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHH-----HHHTCSE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHH-----HHcCCCE
Confidence 9999999999999987 4666554432 4799999999999865321 12211111 1123 37
Q ss_pred EEEeeccCCCCHHHHHHHHHhhhhc
Q 030233 155 IQSCSAISGQGLYEGLDWLSNNISV 179 (181)
Q Consensus 155 ~~~~Sa~~~~~i~~l~~~i~~~~~~ 179 (181)
++++||++|+|++++|+++.+.+.+
T Consensus 157 ~~~~Sa~~~~gi~~l~~~l~~~i~~ 181 (182)
T 3bwd_D 157 YIECSSKSQENVKGVFDAAIRVVLQ 181 (182)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhc
Confidence 9999999999999999999988754
No 98
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.97 E-value=1.2e-30 Score=176.76 Aligned_cols=162 Identities=20% Similarity=0.266 Sum_probs=116.0
Q ss_pred ccEEEEEcCCCCChHHHHHhhhcC--Cc-ccccCccceeEEEEEE-------CCeEEEEEEcCCChhhHHHHHhhccCCC
Q 030233 17 RIKLLMVGLDASGKTTILYKMKLG--EI-VTTTPTIGFNVEAVEY-------KNKSFCVWDVGGQNKIRALWRHYFRDTL 86 (181)
Q Consensus 17 ~~~i~~~G~~~~GKssl~~~~~~~--~~-~~~~~~~~~~~~~~~~-------~~~~~~i~d~~g~~~~~~~~~~~~~~~d 86 (181)
+++|+++|++|+|||||++++++. .+ ..+.+|.+.+...... ....+.+|||+|++.+...++.+++.++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 579999999999999999999985 33 3456777766554432 4668999999999999888888899999
Q ss_pred EEEEEEECCCc-ccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccE----EEEEeecc
Q 030233 87 GLTFVVDSSDR-ERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRW----SIQSCSAI 161 (181)
Q Consensus 87 ~ii~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Sa~ 161 (181)
++++|+|++++ .++..+..|+..+.... ++.|+++|+||+|+.+...................++ .++++||+
T Consensus 82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 159 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMKPWLFNIKARA--SSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNAT 159 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHHHHHHHHHHHC--TTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTT
T ss_pred EEEEEEeCCcchhHHHHHHHHHHHHHhhC--CCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEecc
Confidence 99999999987 57888888988875532 4789999999999875222111111111111112222 49999999
Q ss_pred CCC-CHHHHHHHHHhhhhcc
Q 030233 162 SGQ-GLYEGLDWLSNNISVK 180 (181)
Q Consensus 162 ~~~-~i~~l~~~i~~~~~~~ 180 (181)
+|. +++++++.+.+.+.+.
T Consensus 160 ~~~~~~~~l~~~i~~~~~~~ 179 (184)
T 2zej_A 160 EESDALAKLRKTIINESLNF 179 (184)
T ss_dssp SCCHHHHHHHHHHHHHHHCC
T ss_pred cCchhHHHHHHHHHHHHhcc
Confidence 997 9999999999887654
No 99
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.97 E-value=2.3e-32 Score=187.40 Aligned_cols=159 Identities=21% Similarity=0.345 Sum_probs=117.0
Q ss_pred CccEEEEEcCCCCChHHHHHhhhcCCccc-ccCccce--eEEEEEECC--eEEEEEEcCCChhhHHHHHhhccCCCEEEE
Q 030233 16 CRIKLLMVGLDASGKTTILYKMKLGEIVT-TTPTIGF--NVEAVEYKN--KSFCVWDVGGQNKIRALWRHYFRDTLGLTF 90 (181)
Q Consensus 16 ~~~~i~~~G~~~~GKssl~~~~~~~~~~~-~~~~~~~--~~~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~ 90 (181)
+.++|+++|++|+|||||++++++..+.. ..++.+. ....+...+ ..+.+|||||++.+...+..+++.+|++++
T Consensus 32 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 111 (199)
T 3l0i_B 32 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV 111 (199)
T ss_dssp EEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEEE
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEEE
Confidence 46899999999999999999999887543 3455543 334455555 679999999999999888899999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH--HHHHhhhCccccCCccEEEEEeeccCCCCHHH
Q 030233 91 VVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPT--AEVADKLELYSLGQRRWSIQSCSAISGQGLYE 168 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (181)
|+|+++++++..+..|+..+.... ..+.|+++|+||+|+.+.... ++... .....+++++++||++|+|+++
T Consensus 112 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ilv~nK~Dl~~~~~v~~~~~~~-----~~~~~~~~~~~vSA~~g~gv~~ 185 (199)
T 3l0i_B 112 VYDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTTKKVVDYTTAKE-----FADSLGIPFLETSAKNATNVEQ 185 (199)
T ss_dssp CC-CCCSHHHHHHHHHHHHHHSCC--CCSEEEEC-CCSSCC--CCCCSCC-CH-----HHHTTTCCBCCCCC---HHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhc-cCCCCEEEEEECccCCccccCCHHHHHH-----HHHHcCCeEEEEECCCCCCHHH
Confidence 999999999999999888875543 357999999999998653211 11111 1122345799999999999999
Q ss_pred HHHHHHhhhhcc
Q 030233 169 GLDWLSNNISVK 180 (181)
Q Consensus 169 l~~~i~~~~~~~ 180 (181)
+|++|.+.+.++
T Consensus 186 l~~~l~~~l~~~ 197 (199)
T 3l0i_B 186 SFMTMAAEIKKR 197 (199)
T ss_dssp HHHHHTTTTTTT
T ss_pred HHHHHHHHHHHh
Confidence 999999988765
No 100
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.96 E-value=4.5e-29 Score=170.28 Aligned_cols=161 Identities=14% Similarity=0.101 Sum_probs=109.5
Q ss_pred CCCCccEEEEEcCCCCChHHHHHhhhcCC-cccccCccceeEEEEEE-CCeEEEEEEcCC----------ChhhHHHHHh
Q 030233 13 FPQCRIKLLMVGLDASGKTTILYKMKLGE-IVTTTPTIGFNVEAVEY-KNKSFCVWDVGG----------QNKIRALWRH 80 (181)
Q Consensus 13 ~~~~~~~i~~~G~~~~GKssl~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~i~d~~g----------~~~~~~~~~~ 80 (181)
.+...++|+++|++|+|||||++++++.. .....++.+.+...... .+..+.+||||| ++.+...+..
T Consensus 19 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 98 (195)
T 1svi_A 19 PEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVDVPGYGFAKVSKSEREAWGRMIET 98 (195)
T ss_dssp CCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETTTEEEEECCCBCCCSSCHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECCcEEEEECCCCCccccCHHHHHHHHHHHHH
Confidence 34567999999999999999999999987 44455555544332211 234799999999 6777777888
Q ss_pred hccCC---CEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEE
Q 030233 81 YFRDT---LGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQS 157 (181)
Q Consensus 81 ~~~~~---d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (181)
+++.+ |++++|+|++++.++.... +...+.. .+.|+++|+||+|+.+.....................++++
T Consensus 99 ~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (195)
T 1svi_A 99 YITTREELKAVVQIVDLRHAPSNDDVQ--MYEFLKY---YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELIL 173 (195)
T ss_dssp HHHHCTTEEEEEEEEETTSCCCHHHHH--HHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEEE
T ss_pred HHhhhhcCCEEEEEEECCCCCCHHHHH--HHHHHHH---cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCceEE
Confidence 87766 9999999999877766532 1122222 47899999999999764443322222211111234568999
Q ss_pred eeccCCCCHHHHHHHHHhhhh
Q 030233 158 CSAISGQGLYEGLDWLSNNIS 178 (181)
Q Consensus 158 ~Sa~~~~~i~~l~~~i~~~~~ 178 (181)
+||++|+|++++|++|.+.+.
T Consensus 174 ~Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 174 FSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp CCTTTCTTHHHHHHHHHHHHT
T ss_pred EEccCCCCHHHHHHHHHHHhc
Confidence 999999999999999998775
No 101
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.96 E-value=6.5e-29 Score=167.10 Aligned_cols=162 Identities=18% Similarity=0.169 Sum_probs=119.0
Q ss_pred CCCCccEEEEEcCCCCChHHHHHhhhcCCcccc-cC--ccceeEEEEEECCeEEEEEEcCCChhhHHHHHhhccCCCEEE
Q 030233 13 FPQCRIKLLMVGLDASGKTTILYKMKLGEIVTT-TP--TIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLT 89 (181)
Q Consensus 13 ~~~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii 89 (181)
+..+.++|+++|++|+|||||+++++++.+... .+ +.......+...+..+.+|||||++.+...+..++..+|+++
T Consensus 4 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 83 (178)
T 2lkc_A 4 MVERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTTMRARGAQVTDIVI 83 (178)
T ss_dssp TCCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSCSCCSSCCCCCEEE
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHHHHHHHHhhCCEEE
Confidence 346789999999999999999999998875432 22 333444556778889999999999998888888889999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCcc--ccCCc--cEEEEEeeccCCCC
Q 030233 90 FVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELY--SLGQR--RWSIQSCSAISGQG 165 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~Sa~~~~~ 165 (181)
+|+|++++..... ...+..+.. .+.|+++|+||+|+.+. ..+++...+... ..... ..+++++||++|+|
T Consensus 84 ~v~d~~~~~~~~~-~~~l~~~~~----~~~p~ilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 157 (178)
T 2lkc_A 84 LVVAADDGVMPQT-VEAINHAKA----ANVPIIVAINKMDKPEA-NPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEG 157 (178)
T ss_dssp EEEETTCCCCHHH-HHHHHHHGG----GSCCEEEEEETTTSSCS-CHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHH
T ss_pred EEEECCCCCcHHH-HHHHHHHHh----CCCCEEEEEECccCCcC-CHHHHHHHHHhcCcChhHcCCcccEEEEecCCCCC
Confidence 9999987433222 222333222 47899999999999763 334444333221 11122 37899999999999
Q ss_pred HHHHHHHHHhhhhcc
Q 030233 166 LYEGLDWLSNNISVK 180 (181)
Q Consensus 166 i~~l~~~i~~~~~~~ 180 (181)
++++|++|.+.+...
T Consensus 158 v~~l~~~l~~~~~~~ 172 (178)
T 2lkc_A 158 LDHLLEMILLVSEME 172 (178)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhhhh
Confidence 999999999887654
No 102
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.96 E-value=2.8e-29 Score=181.47 Aligned_cols=157 Identities=16% Similarity=0.141 Sum_probs=116.6
Q ss_pred EEEEEcCCCCChHHHHHhhhcCCccc----ccCccceeEEEEEECCeEEEEEEcCCChhhHH---HHHhhccCCCEEEEE
Q 030233 19 KLLMVGLDASGKTTILYKMKLGEIVT----TTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRA---LWRHYFRDTLGLTFV 91 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~---~~~~~~~~~d~ii~v 91 (181)
||+++|++|+|||||++++.++.++. ..+|.++....+. ....+++|||+|+++|.. .+..++++++++|+|
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~IlV 79 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGALVYV 79 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEEC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEEc-cEEEEEEEECCCchhccchhhhhhhhccCCCEEEEE
Confidence 68999999999999999988765443 5688887776652 458899999999999964 478899999999999
Q ss_pred EECCCc--ccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC----HHHHHhhhCccccCC----ccEEEEEeecc
Q 030233 92 VDSSDR--ERISEARNELHQILSDNELSNAALLVFANKQDLPNVMP----TAEVADKLELYSLGQ----RRWSIQSCSAI 161 (181)
Q Consensus 92 ~d~~~~--~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~----~~~~~~~~~~~~~~~----~~~~~~~~Sa~ 161 (181)
||++++ +.+.....|+..+... .+++|+++++||+|+.++.. .+++........+.. .++.|++|||+
T Consensus 80 ~Ditd~~~~~~~~l~~~l~~~~~~--~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eTSAk 157 (331)
T 3r7w_B 80 IDSQDEYINAITNLAMIIEYAYKV--NPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIF 157 (331)
T ss_dssp CCCSSCTTHHHHHHHHHHHHHHHH--CTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECCCSS
T ss_pred EECCchHHHHHHHHHHHHHHHhhc--CCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEeccC
Confidence 999987 2223333333333221 25799999999999976432 133444333333332 57899999999
Q ss_pred CCCCHHHHHHHHHhhhhc
Q 030233 162 SGQGLYEGLDWLSNNISV 179 (181)
Q Consensus 162 ~~~~i~~l~~~i~~~~~~ 179 (181)
+ .||.++|..+.+.+.+
T Consensus 158 d-~nV~eAFs~iv~~li~ 174 (331)
T 3r7w_B 158 D-HSIYEAFSRIVQKLIP 174 (331)
T ss_dssp S-SHHHHHHHHHHTTSST
T ss_pred C-CcHHHHHHHHHHHHHh
Confidence 8 6999999999988764
No 103
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.96 E-value=9.4e-29 Score=168.53 Aligned_cols=160 Identities=19% Similarity=0.211 Sum_probs=115.4
Q ss_pred CCCCccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEE-ECCeEEEEEEcCC----------ChhhHHHHHhh
Q 030233 13 FPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVE-YKNKSFCVWDVGG----------QNKIRALWRHY 81 (181)
Q Consensus 13 ~~~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~d~~g----------~~~~~~~~~~~ 81 (181)
.+...++|+++|++|+|||||++++++.......++.+.+..... ..+..+.+||||| .+.+...+..+
T Consensus 19 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~ 98 (195)
T 3pqc_A 19 PPPLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLVNSKYYFVDLPGYGYAKVSKKERMLWKRLVEDY 98 (195)
T ss_dssp CCCTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEEETTTEEEEECCCBSSSCCCHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEEECCcEEEEECCCCccccCChhhHHHHHHHHHHH
Confidence 345678999999999999999999999886666676665544322 2455788999999 66677777777
Q ss_pred ccCC---CEEEEEEECCCcccHHHH--HHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEE
Q 030233 82 FRDT---LGLTFVVDSSDRERISEA--RNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQ 156 (181)
Q Consensus 82 ~~~~---d~ii~v~d~~~~~s~~~~--~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (181)
++.+ |++++|+|+++..+.... ..|+.. .+.|+++|+||+|+.+....+...+...........++++
T Consensus 99 ~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~-------~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (195)
T 3pqc_A 99 FKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKS-------LNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTII 171 (195)
T ss_dssp HHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH-------TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCEE
T ss_pred HhcCcCceEEEEEecCCCCCCHHHHHHHHHHHH-------cCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCceE
Confidence 7665 999999999875443332 222222 2689999999999976444443333322211122445799
Q ss_pred EeeccCCCCHHHHHHHHHhhhhc
Q 030233 157 SCSAISGQGLYEGLDWLSNNISV 179 (181)
Q Consensus 157 ~~Sa~~~~~i~~l~~~i~~~~~~ 179 (181)
++||++|+|++++|+++.+.+.+
T Consensus 172 ~~Sa~~~~gv~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 172 PTSSVTGEGISELLDLISTLLKE 194 (195)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHC-
T ss_pred EEecCCCCCHHHHHHHHHHHhhc
Confidence 99999999999999999998865
No 104
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.96 E-value=6.1e-28 Score=168.71 Aligned_cols=161 Identities=17% Similarity=0.160 Sum_probs=110.8
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhcCCcccc---cCccceeEEEEEECCeEEEEEEcCCC------hh----hHHHHHhh
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKLGEIVTT---TPTIGFNVEAVEYKNKSFCVWDVGGQ------NK----IRALWRHY 81 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~i~d~~g~------~~----~~~~~~~~ 81 (181)
.+.++|+++|++|+|||||++++++..+... ..|.......+......+.+|||||. +. +.. +..+
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~-~~~~ 105 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTT-ITAL 105 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHH-HHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHHH-HHHh
Confidence 4679999999999999999999999876421 11333444445567889999999998 43 222 2345
Q ss_pred ccCCCEEEEEEECCCcccHH--HHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHH-HhhhCccccCCcc--EEEE
Q 030233 82 FRDTLGLTFVVDSSDRERIS--EARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEV-ADKLELYSLGQRR--WSIQ 156 (181)
Q Consensus 82 ~~~~d~ii~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~-~~~~~~~~~~~~~--~~~~ 156 (181)
+..+|++++|+|++++.++. ....++..+... ..+.|+++|+||+|+.+....... .... .......+ ++++
T Consensus 106 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 182 (228)
T 2qu8_A 106 AHINGVILFIIDISEQCGLTIKEQINLFYSIKSV--FSNKSIVIGFNKIDKCNMDSLSIDNKLLI-KQILDNVKNPIKFS 182 (228)
T ss_dssp HTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTC--C-CCCEEEEEECGGGCC--CCCHHHHHHH-HHHHHHCCSCEEEE
T ss_pred hccccEEEEEEecccccCcchHHHHHHHHHHHHh--hcCCcEEEEEeCcccCCchhhHHHHHHHH-HHHHHhcCCCceEE
Confidence 67889999999999987764 233455555433 247999999999999754322111 1111 00111222 6899
Q ss_pred EeeccCCCCHHHHHHHHHhhhhc
Q 030233 157 SCSAISGQGLYEGLDWLSNNISV 179 (181)
Q Consensus 157 ~~Sa~~~~~i~~l~~~i~~~~~~ 179 (181)
++||++|+|++++|++|.+.+.+
T Consensus 183 ~~SA~~g~gi~~l~~~l~~~i~~ 205 (228)
T 2qu8_A 183 SFSTLTGVGVEQAKITACELLKN 205 (228)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHH
T ss_pred EEecccCCCHHHHHHHHHHHHHH
Confidence 99999999999999999988754
No 105
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.93 E-value=6e-31 Score=181.02 Aligned_cols=164 Identities=21% Similarity=0.233 Sum_probs=120.2
Q ss_pred hCCCCccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEE-EEEE--CCeEEEEEEcCCChhhHHHHHhhccCCCE
Q 030233 12 FFPQCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVE-AVEY--KNKSFCVWDVGGQNKIRALWRHYFRDTLG 87 (181)
Q Consensus 12 ~~~~~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~-~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ 87 (181)
+...+.++|+++|++|+|||||+++++++.+. .+.++.+.... .+.. ....+.+|||||++.+...+..+++.+|+
T Consensus 25 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 104 (204)
T 3th5_A 25 YFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDV 104 (204)
Confidence 44567899999999999999999999987753 33444443222 1222 44677799999999999999999999999
Q ss_pred EEEEEECCCcccHHHHH-HHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHH---------HHHhhhCccccCCccE-EEE
Q 030233 88 LTFVVDSSDRERISEAR-NELHQILSDNELSNAALLVFANKQDLPNVMPTA---------EVADKLELYSLGQRRW-SIQ 156 (181)
Q Consensus 88 ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~---------~~~~~~~~~~~~~~~~-~~~ 156 (181)
+++|+|++++.++.... .|+..+... . ++.|+++|+||+|+.+..... .+........+...+. +++
T Consensus 105 iilv~D~~~~~s~~~~~~~~~~~l~~~-~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 182 (204)
T 3th5_A 105 FLICFSLVSPASFENVRAKWYPEVRHH-C-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYL 182 (204)
Confidence 99999999999999887 555554332 2 379999999999997532111 1111111112233344 799
Q ss_pred EeeccCCCCHHHHHHHHHhhh
Q 030233 157 SCSAISGQGLYEGLDWLSNNI 177 (181)
Q Consensus 157 ~~Sa~~~~~i~~l~~~i~~~~ 177 (181)
++||++|+|++++|++|.+.+
T Consensus 183 ~vSA~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 183 ECSALTQRGLKTVFDEAIRAV 203 (204)
Confidence 999999999999999998765
No 106
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.96 E-value=3.1e-28 Score=163.31 Aligned_cols=152 Identities=15% Similarity=0.190 Sum_probs=109.2
Q ss_pred CccEEEEEcCCCCChHHHHHhhhcCCcccccC----ccceeEEEEEECCeEEEEEEcCCChhh----HH--H--HHhhcc
Q 030233 16 CRIKLLMVGLDASGKTTILYKMKLGEIVTTTP----TIGFNVEAVEYKNKSFCVWDVGGQNKI----RA--L--WRHYFR 83 (181)
Q Consensus 16 ~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~i~d~~g~~~~----~~--~--~~~~~~ 83 (181)
...+|+++|++|+|||||++++++.......+ +.......+.+.+..+.+|||||.+.+ .. . ...+++
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 82 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIE 82 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEEEEEECCCcccchhHHHHHHHHHHHHHHH
Confidence 45799999999999999999999876432222 223344556678888999999997542 11 1 224578
Q ss_pred CCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCC
Q 030233 84 DTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISG 163 (181)
Q Consensus 84 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (181)
.+|++++|+|++++.++. ...|+..+.... ..++|+++|+||+|+.+... ......+.+++++||++|
T Consensus 83 ~ad~~i~v~D~~~~~s~~-~~~~~~~~~~~~-~~~~p~ilv~NK~Dl~~~~~----------~~~~~~~~~~~~~SA~~g 150 (172)
T 2gj8_A 83 QADRVLFMVDGTTTDAVD-PAEIWPEFIARL-PAKLPITVVRNKADITGETL----------GMSEVNGHALIRLSARTG 150 (172)
T ss_dssp TCSEEEEEEETTTCCCCS-HHHHCHHHHHHS-CTTCCEEEEEECHHHHCCCC----------EEEEETTEEEEECCTTTC
T ss_pred hCCEEEEEEECCCCCCHH-HHHHHHHHHHhc-ccCCCEEEEEECccCCcchh----------hhhhccCCceEEEeCCCC
Confidence 999999999999888775 345555554432 24799999999999854211 111224568999999999
Q ss_pred CCHHHHHHHHHhhhhc
Q 030233 164 QGLYEGLDWLSNNISV 179 (181)
Q Consensus 164 ~~i~~l~~~i~~~~~~ 179 (181)
+|++++|++|.+.+..
T Consensus 151 ~gv~~l~~~l~~~~~~ 166 (172)
T 2gj8_A 151 EGVDVLRNHLKQSMGF 166 (172)
T ss_dssp TTHHHHHHHHHHHC--
T ss_pred CCHHHHHHHHHHHhhh
Confidence 9999999999987653
No 107
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.95 E-value=1.8e-27 Score=158.46 Aligned_cols=148 Identities=21% Similarity=0.235 Sum_probs=107.1
Q ss_pred CccEEEEEcCCCCChHHHHHhhhcCCcc-cccCc--cceeEEEEEECCeEEEEEEcCCChhhH------HHHHhhcc--C
Q 030233 16 CRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPT--IGFNVEAVEYKNKSFCVWDVGGQNKIR------ALWRHYFR--D 84 (181)
Q Consensus 16 ~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~i~d~~g~~~~~------~~~~~~~~--~ 84 (181)
+.++|+++|++|+|||||++++++..+. ...++ .......+.+.+..+.+|||||++.+. .....+++ .
T Consensus 2 ~~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T 2wji_A 2 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEK 81 (165)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSSHHHHHHHHHHHHHC
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcchhHHHHHHHHhcCC
Confidence 4689999999999999999999987632 22232 233344566678899999999987653 44555654 8
Q ss_pred CCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC----CCHHHHHhhhCccccCCccEEEEEeec
Q 030233 85 TLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV----MPTAEVADKLELYSLGQRRWSIQSCSA 160 (181)
Q Consensus 85 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (181)
+|++++|+|+++.+ ....|+..+.. .+.|+++|+||+|+... ...+.+.+.. +++++++||
T Consensus 82 ~~~~i~v~D~~~~~---~~~~~~~~~~~----~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~--------~~~~~~~SA 146 (165)
T 2wji_A 82 PDLVVNIVDATALE---RNLYLTLQLME----MGANLLLALNKMDLAKSLGIEIDVDKLEKIL--------GVKVVPLSA 146 (165)
T ss_dssp CSEEEEEEETTCHH---HHHHHHHHHHH----TTCCEEEEEECHHHHHHTTCCCCHHHHHHHH--------TSCEEECBG
T ss_pred CCEEEEEecCCchh---HhHHHHHHHHh----cCCCEEEEEEchHhccccChhhHHHHHHHHh--------CCCEEEEEc
Confidence 99999999998743 33446655544 36899999999997431 1223333322 246999999
Q ss_pred cCCCCHHHHHHHHHhhhh
Q 030233 161 ISGQGLYEGLDWLSNNIS 178 (181)
Q Consensus 161 ~~~~~i~~l~~~i~~~~~ 178 (181)
++|+|++++|+++.+.+.
T Consensus 147 ~~~~~v~~l~~~l~~~~~ 164 (165)
T 2wji_A 147 AKKMGIEELKKAISIAVK 164 (165)
T ss_dssp GGTBSHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHhh
Confidence 999999999999998774
No 108
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.95 E-value=9.1e-28 Score=158.92 Aligned_cols=147 Identities=19% Similarity=0.220 Sum_probs=106.0
Q ss_pred cEEEEEcCCCCChHHHHHhhhcCCcccccC----ccceeEEEEEECCeEEEEEEcCCChh-------hHHHHHhhccCCC
Q 030233 18 IKLLMVGLDASGKTTILYKMKLGEIVTTTP----TIGFNVEAVEYKNKSFCVWDVGGQNK-------IRALWRHYFRDTL 86 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~i~d~~g~~~-------~~~~~~~~~~~~d 86 (181)
++|+++|++|+|||||++++++..+....+ +.......+...+..+.+|||||... +...+..+++.+|
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 81 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDAE 81 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTCS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCccchHHHHHHHHHHHHHhCC
Confidence 589999999999999999999887432222 22334445666888999999999876 4566777889999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccE-EEEEeeccCCCC
Q 030233 87 GLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRW-SIQSCSAISGQG 165 (181)
Q Consensus 87 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~ 165 (181)
++++|+|++++.+.. ..++...+.. .+.|+++|+||+|+.+. .++..+. . ..+. +++++||++|.|
T Consensus 82 ~~i~v~d~~~~~~~~--~~~~~~~~~~---~~~p~ilv~nK~Dl~~~--~~~~~~~-----~-~~~~~~~~~~Sa~~~~g 148 (161)
T 2dyk_A 82 VVLFAVDGRAELTQA--DYEVAEYLRR---KGKPVILVATKVDDPKH--ELYLGPL-----Y-GLGFGDPIPTSSEHARG 148 (161)
T ss_dssp EEEEEEESSSCCCHH--HHHHHHHHHH---HTCCEEEEEECCCSGGG--GGGCGGG-----G-GGSSCSCEECBTTTTBS
T ss_pred EEEEEEECCCcccHh--HHHHHHHHHh---cCCCEEEEEECcccccc--hHhHHHH-----H-hCCCCCeEEEecccCCC
Confidence 999999998764432 2334344333 47899999999998753 1111111 1 1222 689999999999
Q ss_pred HHHHHHHHHhhh
Q 030233 166 LYEGLDWLSNNI 177 (181)
Q Consensus 166 i~~l~~~i~~~~ 177 (181)
++++|+++.+.+
T Consensus 149 v~~l~~~l~~~l 160 (161)
T 2dyk_A 149 LEELLEAIWERL 160 (161)
T ss_dssp HHHHHHHHHHHC
T ss_pred hHHHHHHHHHhC
Confidence 999999998875
No 109
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.95 E-value=1.9e-27 Score=172.94 Aligned_cols=162 Identities=19% Similarity=0.203 Sum_probs=121.3
Q ss_pred CccEEEEEcCCCCChHHHHHhhhcCC--c--ccccCccceeEEEEEE-CCeEEEEEEcCCChhh-----HHHHHhhccCC
Q 030233 16 CRIKLLMVGLDASGKTTILYKMKLGE--I--VTTTPTIGFNVEAVEY-KNKSFCVWDVGGQNKI-----RALWRHYFRDT 85 (181)
Q Consensus 16 ~~~~i~~~G~~~~GKssl~~~~~~~~--~--~~~~~~~~~~~~~~~~-~~~~~~i~d~~g~~~~-----~~~~~~~~~~~ 85 (181)
..+||+++|++|+|||||+++++++. + ..+.+|.+.....+.+ .+..+.+|||||++.+ ...+..+++.+
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~a 81 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFMENYFTKQKDHIFQMV 81 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHHHHHHHTTTHHHHHTTC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHHhhhhhhhHHHHHhccC
Confidence 36899999999999999999999874 2 2466788888777776 6789999999999988 56788888999
Q ss_pred CEEEEEEECCCcccHHHHHHHHHHHHcC-CCCCCCeEEEEEeCCCCCCCCCHHH---HHhhhCccccCCc---cEEEEEe
Q 030233 86 LGLTFVVDSSDRERISEARNELHQILSD-NELSNAALLVFANKQDLPNVMPTAE---VADKLELYSLGQR---RWSIQSC 158 (181)
Q Consensus 86 d~ii~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~piilv~nK~D~~~~~~~~~---~~~~~~~~~~~~~---~~~~~~~ 158 (181)
|++++|||+++++++..+..|...+... ...+++|+++|+||+|+.+.....+ +............ .++++++
T Consensus 82 d~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~~~t 161 (307)
T 3r7w_A 82 QVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPT 161 (307)
T ss_dssp SEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEEEEC
T ss_pred CEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEEEEe
Confidence 9999999999999999887664433221 1125799999999999875222210 1111111111222 3689999
Q ss_pred eccCCCCHHHHHHHHHhhhh
Q 030233 159 SAISGQGLYEGLDWLSNNIS 178 (181)
Q Consensus 159 Sa~~~~~i~~l~~~i~~~~~ 178 (181)
||++ .++.++|..+.+.+.
T Consensus 162 Sa~~-~~i~e~~~~iv~~li 180 (307)
T 3r7w_A 162 SIWD-ESLYKAWSQIVCSLI 180 (307)
T ss_dssp CTTS-SHHHHHHHHHHHTTC
T ss_pred eecC-ChHHHHHHHHHHHHc
Confidence 9999 899999999887654
No 110
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.95 E-value=6.3e-27 Score=171.80 Aligned_cols=159 Identities=18% Similarity=0.189 Sum_probs=119.9
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEE-EEEECC--eEEEEEEcCCChhhHHHHHhhccCCCEEEE
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVE-AVEYKN--KSFCVWDVGGQNKIRALWRHYFRDTLGLTF 90 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~-~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~ 90 (181)
...++|+++|++|+|||||+++++++.+. .+.+|.+.... .+...+ ..+.+|||||++.+...+..+++.+|++++
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 232 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLI 232 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEE
T ss_pred cceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEE
Confidence 45689999999999999999999988753 44555554332 234444 456699999999999999999999999999
Q ss_pred EEECCCcccHHHHH-HHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--------------HHHHHhhhCccccCCcc-EE
Q 030233 91 VVDSSDRERISEAR-NELHQILSDNELSNAALLVFANKQDLPNVMP--------------TAEVADKLELYSLGQRR-WS 154 (181)
Q Consensus 91 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--------------~~~~~~~~~~~~~~~~~-~~ 154 (181)
|||++++.++.... .|+..+.... .+.|+++|+||+|+.+... .++..... ...+ .+
T Consensus 233 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~~~~~ 305 (332)
T 2wkq_A 233 CFSLVSPASFHHVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMA-----KEIGAVK 305 (332)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHC--TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHH-----HHTTCSE
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhhC--CCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHH-----HHcCCcE
Confidence 99999999999887 4555554322 3799999999999864311 11111111 1123 37
Q ss_pred EEEeeccCCCCHHHHHHHHHhhhhcc
Q 030233 155 IQSCSAISGQGLYEGLDWLSNNISVK 180 (181)
Q Consensus 155 ~~~~Sa~~~~~i~~l~~~i~~~~~~~ 180 (181)
++++||++|+|++++|+++.+.+.+.
T Consensus 306 ~~~~Sa~~~~gi~~l~~~l~~~~~~~ 331 (332)
T 2wkq_A 306 YLECSALTQRGLKTVFDEAIRAVLCP 331 (332)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHHC-
T ss_pred EEEecCCCCcCHHHHHHHHHHHHhcC
Confidence 99999999999999999999987654
No 111
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.95 E-value=9.3e-27 Score=169.29 Aligned_cols=160 Identities=16% Similarity=0.157 Sum_probs=119.1
Q ss_pred CCCccEEEEEcCCCCChHHHHHhhhcCCcccccCcccee----EEEEEEC-CeEEEEEEcCCChh----------hHHHH
Q 030233 14 PQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFN----VEAVEYK-NKSFCVWDVGGQNK----------IRALW 78 (181)
Q Consensus 14 ~~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~----~~~~~~~-~~~~~i~d~~g~~~----------~~~~~ 78 (181)
|...-.|+++|.+|+|||||+|++++..+....+.++++ ....... +.++.+|||||... +...+
T Consensus 7 ~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~ 86 (308)
T 3iev_A 7 HMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIA 86 (308)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHHH
Confidence 445668999999999999999999998865444444433 3334556 89999999999743 34567
Q ss_pred HhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCC-CCCCHHHHHhhhCccccCCccEEEEE
Q 030233 79 RHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLP-NVMPTAEVADKLELYSLGQRRWSIQS 157 (181)
Q Consensus 79 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (181)
..+++.+|++++|+|++++.+......|+..+.. .+.|+++|+||+|+. +..........+... .....++++
T Consensus 87 ~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~----~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~--~~~~~~i~~ 160 (308)
T 3iev_A 87 KQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP----LNKPVIVVINKIDKIGPAKNVLPLIDEIHKK--HPELTEIVP 160 (308)
T ss_dssp HHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG----GCCCEEEEEECGGGSSSGGGGHHHHHHHHHH--CTTCCCEEE
T ss_pred HHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh----cCCCEEEEEECccCCCCHHHHHHHHHHHHHh--ccCCCeEEE
Confidence 7888899999999999988888776665665543 478999999999987 433333332222211 112346999
Q ss_pred eeccCCCCHHHHHHHHHhhhhc
Q 030233 158 CSAISGQGLYEGLDWLSNNISV 179 (181)
Q Consensus 158 ~Sa~~~~~i~~l~~~i~~~~~~ 179 (181)
+||++|.|++++|+++.+.+.+
T Consensus 161 vSA~~g~gv~~L~~~l~~~l~~ 182 (308)
T 3iev_A 161 ISALKGANLDELVKTILKYLPE 182 (308)
T ss_dssp CBTTTTBSHHHHHHHHHHHSCB
T ss_pred EeCCCCCCHHHHHHHHHHhCcc
Confidence 9999999999999999988764
No 112
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.95 E-value=5.2e-28 Score=164.28 Aligned_cols=160 Identities=18% Similarity=0.226 Sum_probs=108.6
Q ss_pred cEEEEEcCCCCChHHHHHhhhcCCccc-ccCccceeEEEEEECCeEEEEEEcCC-----------ChhhHHHHHhhccC-
Q 030233 18 IKLLMVGLDASGKTTILYKMKLGEIVT-TTPTIGFNVEAVEYKNKSFCVWDVGG-----------QNKIRALWRHYFRD- 84 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~d~~g-----------~~~~~~~~~~~~~~- 84 (181)
++|+++|++|+|||||++++++..+.. ..++.......+... .+.+||||| ++.+...+..+++.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWK--NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDN 79 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEEEET--TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeEEEecC--CEEEEECCCccccccCCHHHHHHHHHHHHHHHHhh
Confidence 689999999999999999999887543 334333333334444 789999999 66777777777776
Q ss_pred CCEEEEEEECCCcccHHHH-HHHHHH--------HHcCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhhCccccCCccE
Q 030233 85 TLGLTFVVDSSDRERISEA-RNELHQ--------ILSDNELSNAALLVFANKQDLPNVM--PTAEVADKLELYSLGQRRW 153 (181)
Q Consensus 85 ~d~ii~v~d~~~~~s~~~~-~~~~~~--------~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~ 153 (181)
++++++|+++.+..++... ..|... +.......+.|+++|+||+|+.... ..+++...+... ......
T Consensus 80 ~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~ 158 (190)
T 2cxx_A 80 AKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNVQEVINFLAEKFEVP-LSEIDK 158 (190)
T ss_dssp GGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCHHHHHHHHHHHHTCC-GGGHHH
T ss_pred hccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcHHHHHHHHHHHhhhh-hhccCC
Confidence 7766666666666777665 333321 1111111479999999999987643 122233333221 011134
Q ss_pred EEEEeeccCCCCHHHHHHHHHhhhhcc
Q 030233 154 SIQSCSAISGQGLYEGLDWLSNNISVK 180 (181)
Q Consensus 154 ~~~~~Sa~~~~~i~~l~~~i~~~~~~~ 180 (181)
+++++||++|+|++++|+++.+.+.++
T Consensus 159 ~~~~~Sa~~~~~v~~l~~~l~~~~~~~ 185 (190)
T 2cxx_A 159 VFIPISAKFGDNIERLKNRIFEVIRER 185 (190)
T ss_dssp HEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred cEEEEecCCCCCHHHHHHHHHHhcchh
Confidence 589999999999999999999987654
No 113
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.95 E-value=2.7e-27 Score=164.78 Aligned_cols=163 Identities=13% Similarity=0.164 Sum_probs=110.1
Q ss_pred hCCCCccEEEEEcCCCCChHHHHHhhhcCC-cccccCccceeEE----EEE-ECCeEEEEEEcCCC----------hhhH
Q 030233 12 FFPQCRIKLLMVGLDASGKTTILYKMKLGE-IVTTTPTIGFNVE----AVE-YKNKSFCVWDVGGQ----------NKIR 75 (181)
Q Consensus 12 ~~~~~~~~i~~~G~~~~GKssl~~~~~~~~-~~~~~~~~~~~~~----~~~-~~~~~~~i~d~~g~----------~~~~ 75 (181)
..+...++|+++|.+|+|||||+|++++.. .....++.+++.. .+. ..+..+.+|||||. +.+.
T Consensus 24 ~~~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 103 (223)
T 4dhe_A 24 LPPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWE 103 (223)
T ss_dssp SCCCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHH
T ss_pred CCCCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHH
Confidence 344567899999999999999999999987 3333343333322 222 24578999999994 4455
Q ss_pred HHHHhhccC---CCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccC---
Q 030233 76 ALWRHYFRD---TLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLG--- 149 (181)
Q Consensus 76 ~~~~~~~~~---~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~--- 149 (181)
.....+++. +|++++|+|+.+..+ .....+...+.. .+.|+++|+||+|+...................
T Consensus 104 ~~~~~~~~~~~~~d~vi~v~d~~~~~~--~~~~~~~~~l~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~ 178 (223)
T 4dhe_A 104 QLLSSYLQTRPQLCGMILMMDARRPLT--ELDRRMIEWFAP---TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRD 178 (223)
T ss_dssp HHHHHHHHHCTTEEEEEEEEETTSCCC--HHHHHHHHHHGG---GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcCcCEEEEEEeCCCCCC--HHHHHHHHHHHh---cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhh
Confidence 666666655 788999999987533 222333333333 478999999999987633322222211111111
Q ss_pred ---CccEEEEEeeccCCCCHHHHHHHHHhhhhc
Q 030233 150 ---QRRWSIQSCSAISGQGLYEGLDWLSNNISV 179 (181)
Q Consensus 150 ---~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 179 (181)
....+++++||++|+|++++|++|.+.+..
T Consensus 179 ~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~ 211 (223)
T 4dhe_A 179 AGYAGKLTVQLFSALKRTGLDDAHALIESWLRP 211 (223)
T ss_dssp HTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC-
T ss_pred cccCCCCeEEEeecCCCcCHHHHHHHHHHhcCc
Confidence 356789999999999999999999988764
No 114
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.94 E-value=2.1e-26 Score=156.21 Aligned_cols=153 Identities=20% Similarity=0.230 Sum_probs=113.8
Q ss_pred CCCCccEEEEEcCCCCChHHHHHhhhcCCc-ccccCcc--ceeEEEEEECCeEEEEEEcCCChhhH------HHHHhhcc
Q 030233 13 FPQCRIKLLMVGLDASGKTTILYKMKLGEI-VTTTPTI--GFNVEAVEYKNKSFCVWDVGGQNKIR------ALWRHYFR 83 (181)
Q Consensus 13 ~~~~~~~i~~~G~~~~GKssl~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~i~d~~g~~~~~------~~~~~~~~ 83 (181)
.+++.++|+++|++|+|||||++++++..+ ....++. ......+...+..+.+|||||++.+. ..+..++.
T Consensus 3 ~~~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 82 (188)
T 2wjg_A 3 SHMKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYII 82 (188)
T ss_dssp CCCCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCCcEEEEEECCCcCccccccHHHHHHHHHHh
Confidence 356789999999999999999999998763 2223332 33445566788999999999987763 44555554
Q ss_pred --CCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC----CCHHHHHhhhCccccCCccEEEEE
Q 030233 84 --DTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV----MPTAEVADKLELYSLGQRRWSIQS 157 (181)
Q Consensus 84 --~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 157 (181)
.++++++|+|.++ +.....|+..+.. .+.|+++|+||+|+... ...+++.+.. ++++++
T Consensus 83 ~~~~~~~i~v~d~~~---~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~--------~~~~~~ 147 (188)
T 2wjg_A 83 NEKPDLVVNIVDATA---LERNLYLTLQLME----MGANLLLALNKMDLAKSLGIEIDVDKLEKIL--------GVKVVP 147 (188)
T ss_dssp HHCCSEEEEEEEGGG---HHHHHHHHHHHHT----TTCCEEEEEECHHHHHHTTCCCCHHHHHHHH--------TSCEEE
T ss_pred ccCCCEEEEEecchh---HHHHHHHHHHHHh----cCCCEEEEEEhhhccccccchHHHHHHHHHh--------CCCeEE
Confidence 5999999999864 5566667766654 37899999999997532 1233333332 346999
Q ss_pred eeccCCCCHHHHHHHHHhhhhcc
Q 030233 158 CSAISGQGLYEGLDWLSNNISVK 180 (181)
Q Consensus 158 ~Sa~~~~~i~~l~~~i~~~~~~~ 180 (181)
+||++|+|++++|+++.+.+.++
T Consensus 148 ~Sa~~~~~v~~l~~~i~~~~~~~ 170 (188)
T 2wjg_A 148 LSAAKKMGIEELKKAISIAVKDK 170 (188)
T ss_dssp CBGGGTBSHHHHHHHHHHHHTTC
T ss_pred EEecCCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999887654
No 115
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.94 E-value=3.8e-27 Score=161.47 Aligned_cols=159 Identities=21% Similarity=0.369 Sum_probs=120.4
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhcCCcc-cccCcccee--EEEEEECC--eEEEEEEcCCChhhHHHHHhhccCCCEEE
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFN--VEAVEYKN--KSFCVWDVGGQNKIRALWRHYFRDTLGLT 89 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~--~~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~d~ii 89 (181)
...++|+++|++|+|||||++++++..+. .+.++.+.. ...+.+.+ ..+.+||++|++.+...+..+++.+++++
T Consensus 3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 82 (199)
T 2f9l_A 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL 82 (199)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence 34689999999999999999999998754 344565543 34455554 56789999999988888888889999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhhCccccCCccEEEEEeeccCCCCHH
Q 030233 90 FVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV--MPTAEVADKLELYSLGQRRWSIQSCSAISGQGLY 167 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (181)
+|+|+.++.++.....|+..+... ...+.|+++++||+|+... ...++..... ...++.++++||+++.|++
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~-----~~~~~~~~d~Sal~~~~i~ 156 (199)
T 2f9l_A 83 LVYDIAKHLTYENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTDEARAFA-----EKNNLSFIETSALDSTNVE 156 (199)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHH-----HHTTCEEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-cCCCCeEEEEEECcccccccCcCHHHHHHHH-----HHcCCeEEEEeCCCCCCHH
Confidence 999999998888887787665432 2247899999999998642 2223322221 2244579999999999999
Q ss_pred HHHHHHHhhhhc
Q 030233 168 EGLDWLSNNISV 179 (181)
Q Consensus 168 ~l~~~i~~~~~~ 179 (181)
++|+++.+.+.+
T Consensus 157 ~l~~~l~~~~~~ 168 (199)
T 2f9l_A 157 EAFKNILTEIYR 168 (199)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999887653
No 116
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.94 E-value=1.3e-28 Score=174.74 Aligned_cols=161 Identities=12% Similarity=0.102 Sum_probs=111.0
Q ss_pred CCCccEEEEEcCC---------CCChHHHHHhhhcC---Cc-ccccCcc-ceeE--EE----------------EEECCe
Q 030233 14 PQCRIKLLMVGLD---------ASGKTTILYKMKLG---EI-VTTTPTI-GFNV--EA----------------VEYKNK 61 (181)
Q Consensus 14 ~~~~~~i~~~G~~---------~~GKssl~~~~~~~---~~-~~~~~~~-~~~~--~~----------------~~~~~~ 61 (181)
+++.+||+++|++ |+|||||+++++++ .+ ..+.+|. +... .. +.....
T Consensus 16 ~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 95 (255)
T 3c5h_A 16 FQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVEC 95 (255)
T ss_dssp CCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------
T ss_pred CCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEE
Confidence 4567999999999 99999999999984 33 3333432 1110 00 122457
Q ss_pred EEEEEE-----------------------cCCChhhHHHHHhhcc---------------------CCCEEEEEEECCCc
Q 030233 62 SFCVWD-----------------------VGGQNKIRALWRHYFR---------------------DTLGLTFVVDSSDR 97 (181)
Q Consensus 62 ~~~i~d-----------------------~~g~~~~~~~~~~~~~---------------------~~d~ii~v~d~~~~ 97 (181)
.+.+|| ++|++.+...+..+++ ++|++++|||++++
T Consensus 96 ~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~ 175 (255)
T 3c5h_A 96 KMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRG 175 (255)
T ss_dssp CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC-
T ss_pred EEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCC
Confidence 889999 5566666666666666 69999999999998
Q ss_pred --ccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHHHHHHh
Q 030233 98 --ERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSN 175 (181)
Q Consensus 98 --~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~ 175 (181)
+++..+..|+..+.......++|+++|+||+|+......++...... ...+++++++||++|.|++++|++|.+
T Consensus 176 ~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~----~~~~~~~~e~SAk~g~gv~elf~~l~~ 251 (255)
T 3c5h_A 176 MNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTFAL----SKKNLQVVETSARSNVNVDLAFSTLVQ 251 (255)
T ss_dssp ---CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHHHHHHHHHH----TSSSCCEEECBTTTTBSHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHHHHHHHHHH----hcCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 99999999988876542225799999999999865222222221111 113557999999999999999999998
Q ss_pred hhh
Q 030233 176 NIS 178 (181)
Q Consensus 176 ~~~ 178 (181)
.+.
T Consensus 252 ~l~ 254 (255)
T 3c5h_A 252 LID 254 (255)
T ss_dssp HHH
T ss_pred Hhc
Confidence 764
No 117
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.94 E-value=6.8e-27 Score=177.41 Aligned_cols=159 Identities=15% Similarity=0.116 Sum_probs=115.3
Q ss_pred CccEEEEEcCCCCChHHHHHhhhcCCcccccCccce----eEEEEEECCeEEEEEEcCCC----------hhhHHHHH-h
Q 030233 16 CRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGF----NVEAVEYKNKSFCVWDVGGQ----------NKIRALWR-H 80 (181)
Q Consensus 16 ~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~i~d~~g~----------~~~~~~~~-~ 80 (181)
..++|+++|.+|+|||||+|++++.......+..++ ....+...+..+.+|||||+ +.|...+. .
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~ 253 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALK 253 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHH
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHHHH
Confidence 458999999999999999999999875433332232 23346668889999999997 56665544 4
Q ss_pred hccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HHHHHhhhCccccCCccEEEEEe
Q 030233 81 YFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMP--TAEVADKLELYSLGQRRWSIQSC 158 (181)
Q Consensus 81 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 158 (181)
+++.+|++++|+|++++.+++.. .|+..+.. .+.|+++|+||+|+.+... .+++.+............+++++
T Consensus 254 ~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 328 (436)
T 2hjg_A 254 AIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE----AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFM 328 (436)
T ss_dssp HHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH----TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEEC
T ss_pred HHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH----cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEEE
Confidence 77889999999999988887664 35544433 4799999999999976443 23343333222222345589999
Q ss_pred eccCCCCHHHHHHHHHhhhhc
Q 030233 159 SAISGQGLYEGLDWLSNNISV 179 (181)
Q Consensus 159 Sa~~~~~i~~l~~~i~~~~~~ 179 (181)
||++|+|++++|+.+.+.+.+
T Consensus 329 SA~tg~~v~~l~~~i~~~~~~ 349 (436)
T 2hjg_A 329 SALTKKRIHTLMPAIIKASEN 349 (436)
T ss_dssp CTTTCTTGGGHHHHHHHHHHH
T ss_pred ecccCCCHHHHHHHHHHHHHH
Confidence 999999999999999887653
No 118
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.94 E-value=2.4e-26 Score=166.39 Aligned_cols=155 Identities=15% Similarity=0.100 Sum_probs=112.3
Q ss_pred CccEEEEEcCCCCChHHHHHhhhcCCcccccCcccee----EEEEEECCeEEEEEEcCCChh--------hHHHHHhhcc
Q 030233 16 CRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFN----VEAVEYKNKSFCVWDVGGQNK--------IRALWRHYFR 83 (181)
Q Consensus 16 ~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~i~d~~g~~~--------~~~~~~~~~~ 83 (181)
+..+|+++|.+|+|||||+|++++..+....+.++++ ...+...+.++.+|||||..+ +......+++
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~ 85 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALA 85 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTS
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHHHHh
Confidence 4567999999999999999999998765333322222 223445789999999999765 5666778899
Q ss_pred CCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC-HHHHHhhhCccccCCccEEEEEeeccC
Q 030233 84 DTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMP-TAEVADKLELYSLGQRRWSIQSCSAIS 162 (181)
Q Consensus 84 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (181)
.+|++++|+|++++.+.. ..++...+.... ++.|+++|+||+|+.+... ..+....+ ....+++++||++
T Consensus 86 ~ad~il~VvD~~~~~~~~--~~~i~~~l~~~~-~~~p~ilV~NK~Dl~~~~~~~~~~~~~~------~~~~~~~~iSA~~ 156 (301)
T 1wf3_A 86 DVNAVVWVVDLRHPPTPE--DELVARALKPLV-GKVPILLVGNKLDAAKYPEEAMKAYHEL------LPEAEPRMLSALD 156 (301)
T ss_dssp SCSEEEEEEETTSCCCHH--HHHHHHHHGGGT-TTSCEEEEEECGGGCSSHHHHHHHHHHT------STTSEEEECCTTC
T ss_pred cCCEEEEEEECCCCCChH--HHHHHHHHHhhc-CCCCEEEEEECcccCCchHHHHHHHHHh------cCcCcEEEEeCCC
Confidence 999999999998764433 455544444321 4799999999999875322 11222221 1233699999999
Q ss_pred CCCHHHHHHHHHhhhhc
Q 030233 163 GQGLYEGLDWLSNNISV 179 (181)
Q Consensus 163 ~~~i~~l~~~i~~~~~~ 179 (181)
|.|++++++.+.+.+.+
T Consensus 157 g~gv~~l~~~l~~~l~~ 173 (301)
T 1wf3_A 157 ERQVAELKADLLALMPE 173 (301)
T ss_dssp HHHHHHHHHHHHTTCCB
T ss_pred CCCHHHHHHHHHHhccc
Confidence 99999999999987654
No 119
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.94 E-value=1.1e-25 Score=159.75 Aligned_cols=150 Identities=20% Similarity=0.255 Sum_probs=108.8
Q ss_pred CCCccEEEEEcCCCCChHHHHHhhhcCCcc-cccC--ccceeEEEEEECCeEEEEEEcCCChhhHH------HHHhhc--
Q 030233 14 PQCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTP--TIGFNVEAVEYKNKSFCVWDVGGQNKIRA------LWRHYF-- 82 (181)
Q Consensus 14 ~~~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~i~d~~g~~~~~~------~~~~~~-- 82 (181)
+++.++|+++|++|+|||||+|++++..+. ...+ |.......+...+..+.+|||||...+.. ....++
T Consensus 2 ~~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~ 81 (258)
T 3a1s_A 2 PLHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLK 81 (258)
T ss_dssp -CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHhh
Confidence 456789999999999999999999987743 2222 23333444556789999999999765542 334444
Q ss_pred cCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC----CCHHHHHhhhCccccCCccEEEEEe
Q 030233 83 RDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV----MPTAEVADKLELYSLGQRRWSIQSC 158 (181)
Q Consensus 83 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (181)
..+|++++|+|+++.++. ..++..+.. .+.|+++|+||+|+... .+.+.+.+.+ +++++++
T Consensus 82 ~~~d~ii~V~D~t~~~~~---~~~~~~l~~----~~~pvilv~NK~Dl~~~~~i~~~~~~l~~~l--------g~~vi~~ 146 (258)
T 3a1s_A 82 GDADLVILVADSVNPEQS---LYLLLEILE----MEKKVILAMTAIDEAKKTGMKIDRYELQKHL--------GIPVVFT 146 (258)
T ss_dssp SCCSEEEEEEETTSCHHH---HHHHHHHHT----TTCCEEEEEECHHHHHHTTCCBCHHHHHHHH--------CSCEEEC
T ss_pred cCCCEEEEEeCCCchhhH---HHHHHHHHh----cCCCEEEEEECcCCCCccchHHHHHHHHHHc--------CCCEEEE
Confidence 589999999999886543 335555544 37999999999997432 1233344333 3479999
Q ss_pred eccCCCCHHHHHHHHHhhhh
Q 030233 159 SAISGQGLYEGLDWLSNNIS 178 (181)
Q Consensus 159 Sa~~~~~i~~l~~~i~~~~~ 178 (181)
||++|.|++++|+++.+.+.
T Consensus 147 SA~~g~gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 147 SSVTGEGLEELKEKIVEYAQ 166 (258)
T ss_dssp CTTTCTTHHHHHHHHHHHHH
T ss_pred EeeCCcCHHHHHHHHHHHhh
Confidence 99999999999999988764
No 120
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.93 E-value=7e-27 Score=167.37 Aligned_cols=150 Identities=17% Similarity=0.155 Sum_probs=107.3
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhcCCcc-cccC--ccceeEEEEEECCeEEEEEEcCCChhhH----------HHHHhh
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTP--TIGFNVEAVEYKNKSFCVWDVGGQNKIR----------ALWRHY 81 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~i~d~~g~~~~~----------~~~~~~ 81 (181)
|++++|+++|.+|+|||||+|++++.... ...+ |.......+...+..+.+|||||...+. ..+..+
T Consensus 1 M~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~ 80 (274)
T 3i8s_A 1 MKKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (274)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHH
Confidence 35789999999999999999999988742 1222 2233344455678899999999976544 223333
Q ss_pred c--cCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC----CHHHHHhhhCccccCCccEEE
Q 030233 82 F--RDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVM----PTAEVADKLELYSLGQRRWSI 155 (181)
Q Consensus 82 ~--~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~~ 155 (181)
+ +.+|++++|+|+++.++......++. . .+.|+++|+||+|+.+.. ..+.+.+.+ ++++
T Consensus 81 ~~~~~~d~ii~VvD~~~~~~~~~~~~~l~---~----~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~l--------g~~~ 145 (274)
T 3i8s_A 81 ILSGDADLLINVVDASNLERNLYLTLQLL---E----LGIPCIVALNMLDIAEKQNIRIEIDALSARL--------GCPV 145 (274)
T ss_dssp HHHTCCSEEEEEEEGGGHHHHHHHHHHHH---H----HTCCEEEEEECHHHHHHTTEEECHHHHHHHH--------TSCE
T ss_pred HhhcCCCEEEEEecCCChHHHHHHHHHHH---h----cCCCEEEEEECccchhhhhHHHHHHHHHHhc--------CCCE
Confidence 3 68999999999987554444333333 2 268999999999975422 223333332 3479
Q ss_pred EEeeccCCCCHHHHHHHHHhhhhc
Q 030233 156 QSCSAISGQGLYEGLDWLSNNISV 179 (181)
Q Consensus 156 ~~~Sa~~~~~i~~l~~~i~~~~~~ 179 (181)
+++||++|+|++++++++.+.+.+
T Consensus 146 i~~SA~~g~gi~el~~~i~~~~~~ 169 (274)
T 3i8s_A 146 IPLVSTRGRGIEALKLAIDRYKAN 169 (274)
T ss_dssp EECCCGGGHHHHHHHHHHHTCCCC
T ss_pred EEEEcCCCCCHHHHHHHHHHHHhc
Confidence 999999999999999999987754
No 121
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.93 E-value=2.5e-26 Score=156.43 Aligned_cols=156 Identities=21% Similarity=0.371 Sum_probs=119.4
Q ss_pred CccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeE--EEEEECC--eEEEEEEcCCChhhHHHHHhhccCCCEEEE
Q 030233 16 CRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNV--EAVEYKN--KSFCVWDVGGQNKIRALWRHYFRDTLGLTF 90 (181)
Q Consensus 16 ~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~--~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~ 90 (181)
..++++++|++|||||||++++++..++ .+.+|.+.+. ..+.+.+ ..+.+||++|.+++...+..+++.++++++
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~ 107 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALL 107 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEE
Confidence 3589999999999999999999998854 4566666543 3455555 456679999998888888888889999999
Q ss_pred EEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhhCccccCCccEEEEEeeccCCCCHHH
Q 030233 91 VVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV--MPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYE 168 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (181)
|+|+.+..++..+..|+..+... ...+.|+++++||+|+.+. ...+...... ....+.++++||+++.|+++
T Consensus 108 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~-----~~~~~~~ld~Sald~~~v~~ 181 (191)
T 1oix_A 108 VYDIAKHLTYENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTDEARAFA-----EKNGLSFIETSALDSTNVEA 181 (191)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHH-----HHTTCEEEECCTTTCTTHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccCHHHHHHHH-----HHcCCEEEEEeCCCCCCHHH
Confidence 99999988888877777665432 1247899999999998642 2222222221 23455799999999999999
Q ss_pred HHHHHHhhh
Q 030233 169 GLDWLSNNI 177 (181)
Q Consensus 169 l~~~i~~~~ 177 (181)
+|+.+.+.+
T Consensus 182 l~~~l~~~i 190 (191)
T 1oix_A 182 AFQTILTEI 190 (191)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999998765
No 122
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.93 E-value=1.8e-26 Score=163.56 Aligned_cols=144 Identities=17% Similarity=0.130 Sum_probs=104.9
Q ss_pred cEEEEEcCCCCChHHHHHhhhcCCcc-cccC--ccceeEEEEEECCeEEEEEEcCCChhhHH----------HHHhhc--
Q 030233 18 IKLLMVGLDASGKTTILYKMKLGEIV-TTTP--TIGFNVEAVEYKNKSFCVWDVGGQNKIRA----------LWRHYF-- 82 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~i~d~~g~~~~~~----------~~~~~~-- 82 (181)
.+|+++|.+|+|||||+|++.+.... ...| |.......+.+.+..+.+|||||...+.. ....++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~ 81 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVID 81 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHHhh
Confidence 47999999999999999999988632 2222 23344555667888999999999765542 455666
Q ss_pred cCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC----CHHHHHhhhCccccCCccEEEEEe
Q 030233 83 RDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVM----PTAEVADKLELYSLGQRRWSIQSC 158 (181)
Q Consensus 83 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 158 (181)
+.+|++++|+|+++.++.... ...+ .. .+.|+++|+||+|+.... ..+.+.+.+ +++++++
T Consensus 82 ~~~d~vi~VvDas~~~~~~~l---~~~l-~~---~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~l--------g~~vi~~ 146 (256)
T 3iby_A 82 LEYDCIINVIDACHLERHLYL---TSQL-FE---LGKPVVVALNMMDIAEHRGISIDTEKLESLL--------GCSVIPI 146 (256)
T ss_dssp SCCSEEEEEEEGGGHHHHHHH---HHHH-TT---SCSCEEEEEECHHHHHHTTCEECHHHHHHHH--------CSCEEEC
T ss_pred CCCCEEEEEeeCCCchhHHHH---HHHH-HH---cCCCEEEEEEChhcCCcCCcHHHHHHHHHHc--------CCCEEEE
Confidence 889999999999875544332 2222 22 378999999999975422 223333333 3479999
Q ss_pred eccCCCCHHHHHHHHHhh
Q 030233 159 SAISGQGLYEGLDWLSNN 176 (181)
Q Consensus 159 Sa~~~~~i~~l~~~i~~~ 176 (181)
||++|+|++++|+++.+.
T Consensus 147 SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 147 QAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp BGGGTBSHHHHHHHHHTC
T ss_pred ECCCCCCHHHHHHHHHhh
Confidence 999999999999999876
No 123
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.93 E-value=2.1e-25 Score=167.71 Aligned_cols=164 Identities=14% Similarity=0.040 Sum_probs=115.6
Q ss_pred CCCCccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEE-----------------------EEECCeEEEEEEcC
Q 030233 13 FPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEA-----------------------VEYKNKSFCVWDVG 69 (181)
Q Consensus 13 ~~~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~i~d~~ 69 (181)
..+..++|+++|++++|||||++++++............+... .......+.+||||
T Consensus 4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtP 83 (403)
T 3sjy_A 4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAP 83 (403)
T ss_dssp CCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECC
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECC
Confidence 3466899999999999999999999985432211000000000 00112689999999
Q ss_pred CChhhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCc--cc
Q 030233 70 GQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLEL--YS 147 (181)
Q Consensus 70 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~--~~ 147 (181)
|++++.......+..+|++++|+|+++..++....+++..+... ...|+++|+||+|+.+....++..+.+.. ..
T Consensus 84 Gh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~---~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~ 160 (403)
T 3sjy_A 84 GHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII---GVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKG 160 (403)
T ss_dssp CCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc---CCCCEEEEEECccccchHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999876677777776655433 23689999999999763322222222111 11
Q ss_pred cCCccEEEEEeeccCCCCHHHHHHHHHhhhhc
Q 030233 148 LGQRRWSIQSCSAISGQGLYEGLDWLSNNISV 179 (181)
Q Consensus 148 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 179 (181)
......+++++||++|+|+++++++|.+.+..
T Consensus 161 ~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~ 192 (403)
T 3sjy_A 161 TWAENVPIIPVSALHKINIDSLIEGIEEYIKT 192 (403)
T ss_dssp STTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred hCCCCCEEEEEECCCCcChHHHHHHHHHhCCC
Confidence 12346689999999999999999999987643
No 124
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.93 E-value=2.8e-25 Score=169.32 Aligned_cols=154 Identities=15% Similarity=0.115 Sum_probs=96.8
Q ss_pred CccEEEEEcCCCCChHHHHHhhhcCCcccccCc----cceeEEEEEECCeEEEEEEcCCChhhHHHH--------Hhhcc
Q 030233 16 CRIKLLMVGLDASGKTTILYKMKLGEIVTTTPT----IGFNVEAVEYKNKSFCVWDVGGQNKIRALW--------RHYFR 83 (181)
Q Consensus 16 ~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~--------~~~~~ 83 (181)
..++|+++|.+|+|||||+|++++.......+. .......+.+.+..+.+|||||...+...+ ..+++
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~~ 311 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKMA 311 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETTEEEEEEC--------------------CCCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchhHHHHHHHHHHHhhcc
Confidence 468999999999999999999998863322222 233344567789999999999987765433 34678
Q ss_pred CCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCC
Q 030233 84 DTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISG 163 (181)
Q Consensus 84 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (181)
.+|++++|+|++++.++.....+..-+... .+.|+++|+||+|+.+....+. +.+... ...+++++||++|
T Consensus 312 ~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l---~~~piIvV~NK~Dl~~~~~~~~--~~l~~~----~~~~~i~vSAktg 382 (476)
T 3gee_A 312 EADLILYLLDLGTERLDDELTEIRELKAAH---PAAKFLTVANKLDRAANADALI--RAIADG----TGTEVIGISALNG 382 (476)
T ss_dssp SCSEEEEEEETTTCSSGGGHHHHHHHHHHC---TTSEEEEEEECTTSCTTTHHHH--HHHHHH----HTSCEEECBTTTT
T ss_pred cCCEEEEEEECCCCcchhhhHHHHHHHHhc---CCCCEEEEEECcCCCCccchhH--HHHHhc----CCCceEEEEECCC
Confidence 899999999999987775332222222112 2689999999999976443322 111110 1136999999999
Q ss_pred CCHHHHHHHHHhhhh
Q 030233 164 QGLYEGLDWLSNNIS 178 (181)
Q Consensus 164 ~~i~~l~~~i~~~~~ 178 (181)
+|+++++++|.+.+.
T Consensus 383 ~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 383 DGIDTLKQHMGDLVK 397 (476)
T ss_dssp BSHHHHHHHHTHHHH
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999998875
No 125
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.93 E-value=1.1e-25 Score=171.68 Aligned_cols=160 Identities=16% Similarity=0.152 Sum_probs=113.6
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhcCCcccccCccc----eeEEEEEECCeEEEEEEcCC----------ChhhHHHHH-
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIG----FNVEAVEYKNKSFCVWDVGG----------QNKIRALWR- 79 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~i~d~~g----------~~~~~~~~~- 79 (181)
...++|+++|.+++|||||+|++++.......+..+ .....+...+..+.+||||| ++.+...+.
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~ 272 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRAL 272 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHH
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHHH
Confidence 356899999999999999999999876333222222 22345667888999999999 677777655
Q ss_pred hhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HHHHHhhhCccccCCccEEEEE
Q 030233 80 HYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMP--TAEVADKLELYSLGQRRWSIQS 157 (181)
Q Consensus 80 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 157 (181)
.+++.+|++++|+|+++..+ ....++...+.. .+.|+++|+||+|+.+... .+++.+............++++
T Consensus 273 ~~~~~ad~~llviD~~~~~~--~~~~~~~~~~~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (456)
T 4dcu_A 273 KAIDRSEVVAVVLDGEEGII--EQDKRIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILF 347 (456)
T ss_dssp HHHHHCSEEEEEEETTTCCC--HHHHHHHHHHHH---TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEE
T ss_pred HHHhhCCEEEEEEeCCCCcC--HHHHHHHHHHHH---cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEEE
Confidence 47789999999999986533 333333333333 4799999999999975332 2333333322221223457999
Q ss_pred eeccCCCCHHHHHHHHHhhhhc
Q 030233 158 CSAISGQGLYEGLDWLSNNISV 179 (181)
Q Consensus 158 ~Sa~~~~~i~~l~~~i~~~~~~ 179 (181)
+||++|+|++++|+++.+.+.+
T Consensus 348 ~SA~~g~gv~~l~~~i~~~~~~ 369 (456)
T 4dcu_A 348 MSALTKKRIHTLMPAIIKASEN 369 (456)
T ss_dssp CCTTTCTTGGGHHHHHHHHHHH
T ss_pred EcCCCCcCHHHHHHHHHHHHHH
Confidence 9999999999999999987654
No 126
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.93 E-value=3.5e-25 Score=168.03 Aligned_cols=151 Identities=21% Similarity=0.295 Sum_probs=101.2
Q ss_pred ccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEE----EECCeEEEEEEcCCCh--------hhHHHHHhhccC
Q 030233 17 RIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAV----EYKNKSFCVWDVGGQN--------KIRALWRHYFRD 84 (181)
Q Consensus 17 ~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~i~d~~g~~--------~~~~~~~~~~~~ 84 (181)
.++|+++|.+|+|||||+|++++.......+++|++.... .+.+..+.+|||||.+ .+...+..+++.
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ 82 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDE 82 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHh
Confidence 4689999999999999999999887665666667654432 3367789999999975 677778889999
Q ss_pred CCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCC
Q 030233 85 TLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQ 164 (181)
Q Consensus 85 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (181)
+|++++|+|+.++.+.. ..++..+++. .+.|+++|+||+|+.+... +. .... ....-.++++||++|.
T Consensus 83 ad~il~vvD~~~~~~~~--d~~~~~~l~~---~~~pvilv~NK~D~~~~~~--~~---~~~~--~lg~~~~~~iSA~~g~ 150 (436)
T 2hjg_A 83 ADVIIFMVNGREGVTAA--DEEVAKILYR---TKKPVVLAVNKLDNTEMRA--NI---YDFY--SLGFGEPYPISGTHGL 150 (436)
T ss_dssp CSEEEEEEETTTCSCHH--HHHHHHHHTT---CCSCEEEEEECCCC-------CC---CSSG--GGSSCCCEECBTTTTB
T ss_pred CCEEEEEEeCCCCCCHH--HHHHHHHHHH---cCCCEEEEEECccCccchh--hH---HHHH--HcCCCCeEEEeCcCCC
Confidence 99999999998765543 3456565554 5789999999999865311 11 1111 1111158999999999
Q ss_pred CHHHHHHHHHhhhhc
Q 030233 165 GLYEGLDWLSNNISV 179 (181)
Q Consensus 165 ~i~~l~~~i~~~~~~ 179 (181)
|++++++++.+.+.+
T Consensus 151 gv~~L~~~i~~~l~~ 165 (436)
T 2hjg_A 151 GLGDLLDAVAEHFKN 165 (436)
T ss_dssp THHHHHHHHHHTGGG
T ss_pred ChHHHHHHHHHhcCc
Confidence 999999999988753
No 127
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.92 E-value=4.4e-25 Score=157.55 Aligned_cols=148 Identities=18% Similarity=0.212 Sum_probs=104.2
Q ss_pred CccEEEEEcCCCCChHHHHHhhhcCC-cccccCccceeEEEEEEC-CeEEEEEEcCCChhhH------HHHHhhcc--CC
Q 030233 16 CRIKLLMVGLDASGKTTILYKMKLGE-IVTTTPTIGFNVEAVEYK-NKSFCVWDVGGQNKIR------ALWRHYFR--DT 85 (181)
Q Consensus 16 ~~~~i~~~G~~~~GKssl~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~i~d~~g~~~~~------~~~~~~~~--~~ 85 (181)
..++|+++|++|+|||||+|++++.. .....|...+......+. +..+.+|||||...+. .....++. .+
T Consensus 2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~ 81 (272)
T 3b1v_A 2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKKNKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQRA 81 (272)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEECTTCTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEEEecCCeEEEEECCCcCccCCCChHHHHHHHHHhcCCC
Confidence 35799999999999999999999875 222222222222222222 6789999999987664 45556665 69
Q ss_pred CEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC----CCHHHHHhhhCccccCCccEEEEEeecc
Q 030233 86 LGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV----MPTAEVADKLELYSLGQRRWSIQSCSAI 161 (181)
Q Consensus 86 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (181)
|++++|+|+++.++. ..|...+.. .+.|+++|+||+|+... ...+.+.+.+ +++++++||+
T Consensus 82 d~vi~V~D~t~~e~~---~~~~~~l~~----~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~l--------g~~vi~~SA~ 146 (272)
T 3b1v_A 82 DSILNVVDATNLERN---LYLTTQLIE----TGIPVTIALNMIDVLDGQGKKINVDKLSYHL--------GVPVVATSAL 146 (272)
T ss_dssp SEEEEEEEGGGHHHH---HHHHHHHHH----TCSCEEEEEECHHHHHHTTCCCCHHHHHHHH--------TSCEEECBTT
T ss_pred CEEEEEecCCchHhH---HHHHHHHHh----cCCCEEEEEEChhhCCcCCcHHHHHHHHHHc--------CCCEEEEEcc
Confidence 999999999875443 344444443 37899999999997431 2233343333 3479999999
Q ss_pred CCCCHHHHHHHHHhhhh
Q 030233 162 SGQGLYEGLDWLSNNIS 178 (181)
Q Consensus 162 ~~~~i~~l~~~i~~~~~ 178 (181)
+|+|++++|+++.+.+.
T Consensus 147 ~g~gi~el~~~i~~~~~ 163 (272)
T 3b1v_A 147 KQTGVDQVVKKAAHTTT 163 (272)
T ss_dssp TTBSHHHHHHHHHHSCT
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 99999999999988764
No 128
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.92 E-value=4.3e-25 Score=171.44 Aligned_cols=158 Identities=20% Similarity=0.266 Sum_probs=110.5
Q ss_pred CCCCccEEEEEcCCCCChHHHHHhhhcCCc-ccccCccceeEEEEE--------E----CCeEEEEEEcCCChhhHHHHH
Q 030233 13 FPQCRIKLLMVGLDASGKTTILYKMKLGEI-VTTTPTIGFNVEAVE--------Y----KNKSFCVWDVGGQNKIRALWR 79 (181)
Q Consensus 13 ~~~~~~~i~~~G~~~~GKssl~~~~~~~~~-~~~~~~~~~~~~~~~--------~----~~~~~~i~d~~g~~~~~~~~~ 79 (181)
.+.+.+||+++|.+|+|||||++++.+..+ ....+|.+.+..... . ....+.+||+||++.+.....
T Consensus 37 ~~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~ 116 (535)
T 3dpu_A 37 VHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQ 116 (535)
T ss_dssp BCCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCH
T ss_pred ccccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHH
Confidence 456789999999999999999999998875 445677776665432 1 258999999999999999888
Q ss_pred hhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhhCccccCCccEEEEE
Q 030233 80 HYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVM--PTAEVADKLELYSLGQRRWSIQS 157 (181)
Q Consensus 80 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 157 (181)
.+++.+|++++|+|+++.+. ...|+..+.... ++.|+++|+||+|+.+.. ..+++..... ..+.++++
T Consensus 117 ~~l~~~d~ii~V~D~s~~~~---~~~~~~~l~~~~--~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~ 186 (535)
T 3dpu_A 117 FFMTRSSVYMLLLDSRTDSN---KHYWLRHIEKYG--GKSPVIVVMNKIDENPSYNIEQKKINERFP-----AIENRFHR 186 (535)
T ss_dssp HHHHSSEEEEEEECGGGGGG---HHHHHHHHHHHS--SSCCEEEEECCTTTCTTCCCCHHHHHHHCG-----GGTTCEEE
T ss_pred HHccCCcEEEEEEeCCCchh---HHHHHHHHHHhC--CCCCEEEEEECCCcccccccCHHHHHHHHH-----hcCCceEE
Confidence 89999999999999976544 445555554432 368999999999997533 3334444332 23346999
Q ss_pred eeccCCCCHHHHHHHHHhhhhcc
Q 030233 158 CSAISGQGLYEGLDWLSNNISVK 180 (181)
Q Consensus 158 ~Sa~~~~~i~~l~~~i~~~~~~~ 180 (181)
+||++|.|++++++.+.+.+.+.
T Consensus 187 vSA~~g~gi~eL~~~l~~~~~~~ 209 (535)
T 3dpu_A 187 ISCKNGDGVESIAKSLKSAVLHP 209 (535)
T ss_dssp CCC-----CTTHHHHHHHHHTCT
T ss_pred EecCcccCHHHHHHHHHHHHhcc
Confidence 99999999999999999887653
No 129
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.92 E-value=1.8e-26 Score=160.16 Aligned_cols=119 Identities=24% Similarity=0.370 Sum_probs=95.3
Q ss_pred CCCccEEEEEcCCCCChHHHHHhhhcCCccc----ccCccceeEEEEEECCeEEEEEEcCCChhhHHHHHhhccC----C
Q 030233 14 PQCRIKLLMVGLDASGKTTILYKMKLGEIVT----TTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRD----T 85 (181)
Q Consensus 14 ~~~~~~i~~~G~~~~GKssl~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~----~ 85 (181)
..+.++|+++|++|+|||||++++++..+.. ..++.+... ....+.+|||||++.+...+..+++. +
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 83 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY-----DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFV 83 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG-----GGSSCEEEECCCCGGGTHHHHHHHHHHGGGE
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe-----eCceEEEEECCCcHHHHHHHHHHHHhccccC
Confidence 3467899999999999999999999887543 233332221 56688999999999998888888877 8
Q ss_pred CEEEEEEECC-CcccHHHHHHHHHHHHcCC---CCCCCeEEEEEeCCCCCCCCCHH
Q 030233 86 LGLTFVVDSS-DRERISEARNELHQILSDN---ELSNAALLVFANKQDLPNVMPTA 137 (181)
Q Consensus 86 d~ii~v~d~~-~~~s~~~~~~~~~~~~~~~---~~~~~piilv~nK~D~~~~~~~~ 137 (181)
|++++|+|++ +++++.....|+..++... ...+.|+++|+||+|+.......
T Consensus 84 ~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~ 139 (218)
T 1nrj_B 84 KGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPS 139 (218)
T ss_dssp EEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHH
T ss_pred CEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHH
Confidence 9999999999 8899999999888876532 22579999999999998765533
No 130
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.92 E-value=1.4e-24 Score=164.78 Aligned_cols=150 Identities=22% Similarity=0.244 Sum_probs=102.3
Q ss_pred cEEEEEcCCCCChHHHHHhhhcCCcccccCccce----eEEEEEECCeEEEEEEcCCChh---------hHHHHHhhccC
Q 030233 18 IKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGF----NVEAVEYKNKSFCVWDVGGQNK---------IRALWRHYFRD 84 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~i~d~~g~~~---------~~~~~~~~~~~ 84 (181)
.+|+++|.+|+|||||+|++++.......+++++ ....+.+.+..+.+|||||.+. +..++..+++.
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ 81 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIRE 81 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHHHh
Confidence 4799999999999999999998874433344443 3456677889999999999653 45677889999
Q ss_pred CCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHH-HhhhCccccCCccEEEEEeeccCC
Q 030233 85 TLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEV-ADKLELYSLGQRRWSIQSCSAISG 163 (181)
Q Consensus 85 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (181)
+|++++|+|+.+..+.. ..++...++. .+.|+++|+||+|+.+.. ..+. .+... .+. .+++++||++|
T Consensus 82 ad~il~V~D~~~~~~~~--d~~i~~~l~~---~~~p~ilv~NK~D~~~~~-~~~~~~~~~~---lg~--~~~~~iSA~~g 150 (439)
T 1mky_A 82 ADLVLFVVDGKRGITKE--DESLADFLRK---STVDTILVANKAENLREF-EREVKPELYS---LGF--GEPIPVSAEHN 150 (439)
T ss_dssp CSEEEEEEETTTCCCHH--HHHHHHHHHH---HTCCEEEEEESCCSHHHH-HHHTHHHHGG---GSS--CSCEECBTTTT
T ss_pred CCEEEEEEECCCCCCHH--HHHHHHHHHH---cCCCEEEEEeCCCCcccc-HHHHHHHHHh---cCC--CCEEEEeccCC
Confidence 99999999998654432 2333333332 368999999999975310 1111 12111 111 14799999999
Q ss_pred CCHHHHHHHHHhhhh
Q 030233 164 QGLYEGLDWLSNNIS 178 (181)
Q Consensus 164 ~~i~~l~~~i~~~~~ 178 (181)
.|++++++++.+.+.
T Consensus 151 ~gv~~L~~~i~~~l~ 165 (439)
T 1mky_A 151 INLDTMLETIIKKLE 165 (439)
T ss_dssp BSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhcc
Confidence 999999999988775
No 131
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.92 E-value=9.9e-24 Score=150.93 Aligned_cols=151 Identities=20% Similarity=0.190 Sum_probs=109.7
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhcCCcc-cccC--ccceeEEEEEECCeEEEEEEcCCChhhHH------HHHhhc--c
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTP--TIGFNVEAVEYKNKSFCVWDVGGQNKIRA------LWRHYF--R 83 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~i~d~~g~~~~~~------~~~~~~--~ 83 (181)
++.++|+++|++|+|||||+|++++..+. ...+ +.......+.+.+..+.+|||||...+.. ....++ .
T Consensus 1 m~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 80 (271)
T 3k53_A 1 MVLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARNFILDG 80 (271)
T ss_dssp CCCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTT
T ss_pred CceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHHHHHHHHhhhcc
Confidence 35689999999999999999999988752 2223 23334445666888999999999766543 455555 6
Q ss_pred CCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC----CCCHHHHHhhhCccccCCccEEEEEee
Q 030233 84 DTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPN----VMPTAEVADKLELYSLGQRRWSIQSCS 159 (181)
Q Consensus 84 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (181)
.+|++++|+|+++. .....++..+... ...|+++|+||+|+.+ ....+.+.+.+ +++++++|
T Consensus 81 ~~d~vi~v~D~~~~---~~~~~~~~~~~~~---~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~l--------g~~~~~~S 146 (271)
T 3k53_A 81 NADVIVDIVDSTCL---MRNLFLTLELFEM---EVKNIILVLNKFDLLKKKGAKIDIKKMRKEL--------GVPVIPTN 146 (271)
T ss_dssp CCSEEEEEEEGGGH---HHHHHHHHHHHHT---TCCSEEEEEECHHHHHHHTCCCCHHHHHHHH--------SSCEEECB
T ss_pred CCcEEEEEecCCcc---hhhHHHHHHHHhc---CCCCEEEEEEChhcCcccccHHHHHHHHHHc--------CCcEEEEE
Confidence 89999999999864 3334445555443 2399999999999643 12334444443 24699999
Q ss_pred ccCCCCHHHHHHHHHhhhhc
Q 030233 160 AISGQGLYEGLDWLSNNISV 179 (181)
Q Consensus 160 a~~~~~i~~l~~~i~~~~~~ 179 (181)
|++|.|++++|+.+.+.+.+
T Consensus 147 a~~g~gi~~l~~~i~~~~~~ 166 (271)
T 3k53_A 147 AKKGEGVEELKRMIALMAEG 166 (271)
T ss_dssp GGGTBTHHHHHHHHHHHHHT
T ss_pred eCCCCCHHHHHHHHHHHHhc
Confidence 99999999999999887654
No 132
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.92 E-value=5.7e-24 Score=157.59 Aligned_cols=158 Identities=15% Similarity=0.138 Sum_probs=115.3
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhcCCccc---ccCccceeEEEEEECCeEEEEEEcCCChhh---------HHHHHhhc
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKLGEIVT---TTPTIGFNVEAVEYKNKSFCVWDVGGQNKI---------RALWRHYF 82 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~---------~~~~~~~~ 82 (181)
...++++++|.+|+|||||+|++++..... ...|.......+...+..+.+|||||.... ........
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 244 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILALR 244 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHHGGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHHHHHHHH
Confidence 456899999999999999999999877321 123445555566667889999999996432 11222445
Q ss_pred cCCCEEEEEEECCCcc--cHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeec
Q 030233 83 RDTLGLTFVVDSSDRE--RISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSA 160 (181)
Q Consensus 83 ~~~d~ii~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (181)
..+|++++|+|++++. ++.....++..+.... .+.|+++|+||+|+......++..... ...+.+++++||
T Consensus 245 ~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~--~~~piilV~NK~Dl~~~~~~~~~~~~~-----~~~~~~~~~iSA 317 (357)
T 2e87_A 245 YLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEF--KDLPFLVVINKIDVADEENIKRLEKFV-----KEKGLNPIKISA 317 (357)
T ss_dssp GTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHT--TTSCEEEEECCTTTCCHHHHHHHHHHH-----HHTTCCCEECBT
T ss_pred hcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhc--CCCCEEEEEECcccCChHHHHHHHHHH-----HhcCCCeEEEeC
Confidence 5799999999998876 6777777877776532 278999999999987632222222221 123457999999
Q ss_pred cCCCCHHHHHHHHHhhhhc
Q 030233 161 ISGQGLYEGLDWLSNNISV 179 (181)
Q Consensus 161 ~~~~~i~~l~~~i~~~~~~ 179 (181)
++|+|++++++++.+.+..
T Consensus 318 ~~g~gi~~l~~~i~~~l~~ 336 (357)
T 2e87_A 318 LKGTGIDLVKEEIIKTLRP 336 (357)
T ss_dssp TTTBTHHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHH
Confidence 9999999999999987753
No 133
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.92 E-value=7.3e-24 Score=153.97 Aligned_cols=134 Identities=21% Similarity=0.314 Sum_probs=108.6
Q ss_pred CccceeEEEEEECCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECC----------CcccHHHHHHHHHHHHcCCCC
Q 030233 47 PTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSS----------DRERISEARNELHQILSDNEL 116 (181)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~s~~~~~~~~~~~~~~~~~ 116 (181)
+|.|+....+...+..+++|||+|++.++..|..++++++++|+|+|++ +..++.+...|+..+......
T Consensus 153 ~TiGi~~~~~~~~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~ 232 (327)
T 3ohm_A 153 PTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWF 232 (327)
T ss_dssp CCCSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGG
T ss_pred ceeeEEEEEEEeeceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhcc
Confidence 3567777778889999999999999999999999999999999999664 678899999999999888777
Q ss_pred CCCeEEEEEeCCCCCC------------------CCCHHHHHhhh-----CccccCCccEEEEEeeccCCCCHHHHHHHH
Q 030233 117 SNAALLVFANKQDLPN------------------VMPTAEVADKL-----ELYSLGQRRWSIQSCSAISGQGLYEGLDWL 173 (181)
Q Consensus 117 ~~~piilv~nK~D~~~------------------~~~~~~~~~~~-----~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i 173 (181)
.+.|+++++||+|+.. ..+.++..+.+ .........+.++++||++++||+.+|+.+
T Consensus 233 ~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v 312 (327)
T 3ohm_A 233 QNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAV 312 (327)
T ss_dssp TTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHH
Confidence 7899999999999853 12333333321 111124467889999999999999999999
Q ss_pred Hhhhhcc
Q 030233 174 SNNISVK 180 (181)
Q Consensus 174 ~~~~~~~ 180 (181)
.+.+.++
T Consensus 313 ~~~Il~~ 319 (327)
T 3ohm_A 313 KDTILQL 319 (327)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 9988764
No 134
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.91 E-value=2.2e-24 Score=158.80 Aligned_cols=133 Identities=23% Similarity=0.348 Sum_probs=107.2
Q ss_pred ccceeEEEEEECCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCC----------cccHHHHHHHHHHHHcCCCCC
Q 030233 48 TIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSD----------RERISEARNELHQILSDNELS 117 (181)
Q Consensus 48 ~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~ 117 (181)
|.|+....+.+.+..+.+|||+|++.++..|..++++++++|+|+|+++ ..++.+...|+..+.......
T Consensus 180 T~Gi~~~~~~~~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~ 259 (353)
T 1cip_A 180 TTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFT 259 (353)
T ss_dssp CCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGT
T ss_pred eeceEEEEEeeCCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCcccc
Confidence 5566666777789999999999999999999999999999999999998 567999999999998876667
Q ss_pred CCeEEEEEeCCCCCC-----------------CCCHHHHHhhhC-----cccc-CCccEEEEEeeccCCCCHHHHHHHHH
Q 030233 118 NAALLVFANKQDLPN-----------------VMPTAEVADKLE-----LYSL-GQRRWSIQSCSAISGQGLYEGLDWLS 174 (181)
Q Consensus 118 ~~piilv~nK~D~~~-----------------~~~~~~~~~~~~-----~~~~-~~~~~~~~~~Sa~~~~~i~~l~~~i~ 174 (181)
+.|+++++||+|+.. ..+.++...... .... ....+.+++|||++|+||+++|+++.
T Consensus 260 ~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~ 339 (353)
T 1cip_A 260 DTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVT 339 (353)
T ss_dssp TSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHH
Confidence 899999999999842 123444333322 1100 13578899999999999999999999
Q ss_pred hhhhcc
Q 030233 175 NNISVK 180 (181)
Q Consensus 175 ~~~~~~ 180 (181)
+.+.++
T Consensus 340 ~~i~~~ 345 (353)
T 1cip_A 340 DVIIKN 345 (353)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887654
No 135
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.91 E-value=1.1e-24 Score=166.15 Aligned_cols=154 Identities=23% Similarity=0.305 Sum_probs=104.1
Q ss_pred CCCCccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEE----EECCeEEEEEEcCC--------ChhhHHHHHh
Q 030233 13 FPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAV----EYKNKSFCVWDVGG--------QNKIRALWRH 80 (181)
Q Consensus 13 ~~~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~i~d~~g--------~~~~~~~~~~ 80 (181)
..+...+|+++|.+|||||||+|++++.......+++|++.... .+.+..+.+||||| ++.+...+..
T Consensus 19 ~~m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~ 98 (456)
T 4dcu_A 19 SHMGKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEI 98 (456)
T ss_dssp ----CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHH
T ss_pred hhcCCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHh
Confidence 34567899999999999999999999987665566666665433 23677899999999 7778888899
Q ss_pred hccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeec
Q 030233 81 YFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSA 160 (181)
Q Consensus 81 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (181)
+++.+|++++|+|..+ ++.....++...+.. .+.|+++|+||+|+.... ....+... .+.. .++++||
T Consensus 99 ~~~~ad~il~VvD~~~--~~~~~d~~l~~~l~~---~~~pvilV~NK~D~~~~~--~~~~e~~~---lg~~--~~~~iSA 166 (456)
T 4dcu_A 99 AMDEADVIIFMVNGRE--GVTAADEEVAKILYR---TKKPVVLAVNKLDNTEMR--ANIYDFYS---LGFG--EPYPISG 166 (456)
T ss_dssp HHHHCSEEEEEEESSS--CSCHHHHHHHHHHTT---CCSCEEEEEECC-----------CCSGG---GSSS--SEEECCT
T ss_pred hHhhCCEEEEEEeCCC--CCChHHHHHHHHHHH---cCCCEEEEEECccchhhh--hhHHHHHH---cCCC--ceEEeec
Confidence 9999999999999865 344555666666665 579999999999986421 11111111 1111 3679999
Q ss_pred cCCCCHHHHHHHHHhhhh
Q 030233 161 ISGQGLYEGLDWLSNNIS 178 (181)
Q Consensus 161 ~~~~~i~~l~~~i~~~~~ 178 (181)
++|.|+.++++.+.+.+.
T Consensus 167 ~~g~gv~~L~~~i~~~l~ 184 (456)
T 4dcu_A 167 THGLGLGDLLDAVAEHFK 184 (456)
T ss_dssp TTCTTHHHHHHHHHTTGG
T ss_pred ccccchHHHHHHHHhhcc
Confidence 999999999999988765
No 136
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.91 E-value=1.9e-24 Score=158.56 Aligned_cols=156 Identities=23% Similarity=0.292 Sum_probs=112.7
Q ss_pred EEEEEcCCCCChHHHHHhhhcCCcc--cc-cCccceeEEEEEECC-eEEEEEEcCCChh----hHHHHHhh---ccCCCE
Q 030233 19 KLLMVGLDASGKTTILYKMKLGEIV--TT-TPTIGFNVEAVEYKN-KSFCVWDVGGQNK----IRALWRHY---FRDTLG 87 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~~~~~--~~-~~~~~~~~~~~~~~~-~~~~i~d~~g~~~----~~~~~~~~---~~~~d~ 87 (181)
+|+++|.+++|||||++++++..+. .+ ..|...+...+.+.+ ..+.+|||||... +..+...+ ++.+++
T Consensus 160 ~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d~ 239 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRV 239 (342)
T ss_dssp CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCE
T ss_pred eeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHHHhccE
Confidence 6899999999999999999987632 21 234445555566654 7999999999533 22233333 345999
Q ss_pred EEEEEECCC---cccHHHHHHHHHHHHcCC-CCCCCeEEEEEeCCCCCCCCC-HHHHHhhhCccccCCccEEEEEeeccC
Q 030233 88 LTFVVDSSD---RERISEARNELHQILSDN-ELSNAALLVFANKQDLPNVMP-TAEVADKLELYSLGQRRWSIQSCSAIS 162 (181)
Q Consensus 88 ii~v~d~~~---~~s~~~~~~~~~~~~~~~-~~~~~piilv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (181)
+++|+|+++ +++++....|...+.... ...+.|+++|+||+|+..... .+++.+.+. ...+++++||++
T Consensus 240 ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~e~~~~l~~~l~------~~~~v~~iSA~t 313 (342)
T 1lnz_A 240 IVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEKLT------DDYPVFPISAVT 313 (342)
T ss_dssp EEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHHHHHCC------SCCCBCCCSSCC
T ss_pred EEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCHHHHHHHHHHhh------cCCCEEEEECCC
Confidence 999999998 788888888887776542 235799999999999875211 122222221 114699999999
Q ss_pred CCCHHHHHHHHHhhhhcc
Q 030233 163 GQGLYEGLDWLSNNISVK 180 (181)
Q Consensus 163 ~~~i~~l~~~i~~~~~~~ 180 (181)
++|+++++++|.+.+.+.
T Consensus 314 g~gi~eL~~~l~~~l~~~ 331 (342)
T 1lnz_A 314 REGLRELLFEVANQLENT 331 (342)
T ss_dssp SSTTHHHHHHHHHHHTSC
T ss_pred CcCHHHHHHHHHHHHhhC
Confidence 999999999999988653
No 137
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.91 E-value=7.9e-25 Score=164.41 Aligned_cols=152 Identities=15% Similarity=0.146 Sum_probs=107.9
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhcCCccccc----CccceeEEEEEECCe-EEEEEEcCCChhhHHH-------HHhhc
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKLGEIVTTT----PTIGFNVEAVEYKNK-SFCVWDVGGQNKIRAL-------WRHYF 82 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~----~~~~~~~~~~~~~~~-~~~i~d~~g~~~~~~~-------~~~~~ 82 (181)
...++|+++|++++|||||++++++..+.... .|.......+.+.+. .+.+|||||++++... ...++
T Consensus 32 ~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~~~l 111 (423)
T 3qq5_A 32 GFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKARRVF 111 (423)
T ss_dssp CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHHHHH
Confidence 35689999999999999999999988754322 233344455666544 9999999998765432 45678
Q ss_pred cCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccC
Q 030233 83 RDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAIS 162 (181)
Q Consensus 83 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (181)
..+|++++|+|+... .....|+..+.+. +.|+++|+||+|+......+ ..+.+. ...+.+++++||++
T Consensus 112 ~~aD~vllVvD~~~~---~~~~~~l~~l~~~----~~piIvV~NK~Dl~~~~~~~-~~~~l~----~~~g~~v~~vSAkt 179 (423)
T 3qq5_A 112 YRADCGILVTDSAPT---PYEDDVVNLFKEM----EIPFVVVVNKIDVLGEKAEE-LKGLYE----SRYEAKVLLVSALQ 179 (423)
T ss_dssp TSCSEEEEECSSSCC---HHHHHHHHHHHHT----TCCEEEECCCCTTTTCCCTH-HHHHSS----CCTTCCCCCCSSCC
T ss_pred hcCCEEEEEEeCCCh---HHHHHHHHHHHhc----CCCEEEEEeCcCCCCccHHH-HHHHHH----HHcCCCEEEEECCC
Confidence 899999999999332 2344555555443 78999999999998755542 223222 23345899999999
Q ss_pred CCCHHHHHHHHHhhhh
Q 030233 163 GQGLYEGLDWLSNNIS 178 (181)
Q Consensus 163 ~~~i~~l~~~i~~~~~ 178 (181)
|+|++++|++|.+.+.
T Consensus 180 g~gI~eL~~~L~~~l~ 195 (423)
T 3qq5_A 180 KKGFDDIGKTISEILP 195 (423)
T ss_dssp TTSTTTHHHHHHHHSC
T ss_pred CCCHHHHHHHHHHhhh
Confidence 9999999999999874
No 138
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.91 E-value=6.6e-23 Score=154.35 Aligned_cols=159 Identities=15% Similarity=0.079 Sum_probs=103.4
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhcCCcc----c--ccCccceeEEEEEE---------------C--------CeEEEE
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKLGEIV----T--TTPTIGFNVEAVEY---------------K--------NKSFCV 65 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~----~--~~~~~~~~~~~~~~---------------~--------~~~~~i 65 (181)
+..++|+++|+.++|||||++++.+.... + ...|....+..... . ...+.+
T Consensus 6 ~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i 85 (408)
T 1s0u_A 6 QAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSF 85 (408)
T ss_dssp CCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEE
T ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEE
Confidence 45789999999999999999999865321 1 12244433332221 1 168999
Q ss_pred EEcCCChhhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC----HHHHHh
Q 030233 66 WDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMP----TAEVAD 141 (181)
Q Consensus 66 ~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~----~~~~~~ 141 (181)
|||||+++|.......+..+|++++|+|+++........+.+..+... ...|+++++||+|+..... .+++.+
T Consensus 86 iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l---~~~~iivv~NK~Dl~~~~~~~~~~~~i~~ 162 (408)
T 1s0u_A 86 VDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEIL---GIDKIIIVQNKIDLVDEKQAEENYEQIKE 162 (408)
T ss_dssp EECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT---TCCCEEEEEECTTSSCTTTTTTHHHHHHH
T ss_pred EECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHc---CCCeEEEEEEccCCCCHHHHHHHHHHHHH
Confidence 999999999988888888899999999998643122222222222222 2358999999999976432 233344
Q ss_pred hhCccccCCccEEEEEeeccCCCCHHHHHHHHHhhhh
Q 030233 142 KLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNIS 178 (181)
Q Consensus 142 ~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~ 178 (181)
.+... .....+++++||++|+|+++++++|.+.+.
T Consensus 163 ~l~~~--~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~ 197 (408)
T 1s0u_A 163 FVKGT--IAENAPIIPISAHHEANIDVLLKAIQDFIP 197 (408)
T ss_dssp HHTTS--TTTTCCEEEC------CHHHHHHHHHHHSC
T ss_pred HHhhc--CCCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 33221 224568999999999999999999998664
No 139
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.91 E-value=5.5e-24 Score=162.36 Aligned_cols=149 Identities=21% Similarity=0.263 Sum_probs=111.8
Q ss_pred ccEEEEEcCCCCChHHHHHhhhcCCccccc----CccceeEEEEEECCeEEEEEEcCCCh-hhH--------HHHHhhcc
Q 030233 17 RIKLLMVGLDASGKTTILYKMKLGEIVTTT----PTIGFNVEAVEYKNKSFCVWDVGGQN-KIR--------ALWRHYFR 83 (181)
Q Consensus 17 ~~~i~~~G~~~~GKssl~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~i~d~~g~~-~~~--------~~~~~~~~ 83 (181)
.++|+++|.+|+|||||+|++++....... .|.......+.+.+..+.+|||||.. .+. .....+++
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~ 322 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIE 322 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHH
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHHhh
Confidence 489999999999999999999987633222 23344456677789999999999987 432 23446778
Q ss_pred CCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCC
Q 030233 84 DTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISG 163 (181)
Q Consensus 84 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (181)
.+|++++|+|++++.++.... .+.. + .+.|+++|+||+|+.+..+.+++..... ...+++++||++|
T Consensus 323 ~aD~vl~VvD~s~~~s~~~~~-il~~-l-----~~~piivV~NK~DL~~~~~~~~~~~~~~------~~~~~i~iSAktg 389 (482)
T 1xzp_A 323 KADIVLFVLDASSPLDEEDRK-ILER-I-----KNKRYLVVINKVDVVEKINEEEIKNKLG------TDRHMVKISALKG 389 (482)
T ss_dssp HCSEEEEEEETTSCCCHHHHH-HHHH-H-----TTSSEEEEEEECSSCCCCCHHHHHHHHT------CSTTEEEEEGGGT
T ss_pred cccEEEEEecCCCCCCHHHHH-HHHH-h-----cCCCEEEEEECcccccccCHHHHHHHhc------CCCcEEEEECCCC
Confidence 899999999999887775532 2332 2 3689999999999976545455444321 2235899999999
Q ss_pred CCHHHHHHHHHhhhh
Q 030233 164 QGLYEGLDWLSNNIS 178 (181)
Q Consensus 164 ~~i~~l~~~i~~~~~ 178 (181)
+|+++++++|.+.+.
T Consensus 390 ~Gi~eL~~~l~~~~~ 404 (482)
T 1xzp_A 390 EGLEKLEESIYRETQ 404 (482)
T ss_dssp CCHHHHHHHHHHHTH
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999998754
No 140
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.91 E-value=7.1e-24 Score=160.97 Aligned_cols=159 Identities=16% Similarity=0.123 Sum_probs=107.9
Q ss_pred CccEEEEEcCCCCChHHHHHhhhcCCcccccCcccee----EEEEEECCeEEEEEEcCCChhhHHH------------HH
Q 030233 16 CRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFN----VEAVEYKNKSFCVWDVGGQNKIRAL------------WR 79 (181)
Q Consensus 16 ~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~i~d~~g~~~~~~~------------~~ 79 (181)
..++++++|++|+|||||+|++++.......+..+++ ...+.+.+..+.+|||||....... ..
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~ 258 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVV 258 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHH
Confidence 3589999999999999999999988754333333332 3456678889999999997543221 13
Q ss_pred hhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HHHHHhhhCccccCCccEEEEE
Q 030233 80 HYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMP--TAEVADKLELYSLGQRRWSIQS 157 (181)
Q Consensus 80 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 157 (181)
.+++.+|++++|+|+.+..+... .++...+.. .+.|+++|+||+|+.+... .+++.+............++++
T Consensus 259 ~~i~~ad~vllv~d~~~~~~~~~--~~i~~~l~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (439)
T 1mky_A 259 DSIEKADVVVIVLDATQGITRQD--QRMAGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIF 333 (439)
T ss_dssp HHHHHCSEEEEEEETTTCCCHHH--HHHHHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEE
T ss_pred HHHhhCCEEEEEEeCCCCCCHHH--HHHHHHHHH---cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEEE
Confidence 45677999999999987666543 233333333 4789999999999875322 3333333222111223457999
Q ss_pred eeccCCCCHHHHHHHHHhhhhc
Q 030233 158 CSAISGQGLYEGLDWLSNNISV 179 (181)
Q Consensus 158 ~Sa~~~~~i~~l~~~i~~~~~~ 179 (181)
+||++|.|++++|+.+.+.+.+
T Consensus 334 ~SA~~g~gv~~l~~~i~~~~~~ 355 (439)
T 1mky_A 334 TSADKGWNIDRMIDAMNLAYAS 355 (439)
T ss_dssp CBTTTTBSHHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999876644
No 141
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.91 E-value=4.8e-24 Score=163.25 Aligned_cols=160 Identities=17% Similarity=0.103 Sum_probs=111.2
Q ss_pred CCCccEEEEEcCCCCChHHHHHhhhcCC----cc------cccCccceeEEEEEECCeEEEEEEcCCChhhHHHHHhhcc
Q 030233 14 PQCRIKLLMVGLDASGKTTILYKMKLGE----IV------TTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFR 83 (181)
Q Consensus 14 ~~~~~~i~~~G~~~~GKssl~~~~~~~~----~~------~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~ 83 (181)
+++.++|+++|++++|||||++++.+.. .. ....|.......+.+.+..+.+|||||+++|.......+.
T Consensus 16 ~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~~~~~~~~~~~~ 95 (482)
T 1wb1_A 16 DFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAAD 95 (482)
T ss_dssp CCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHHTT
T ss_pred cCCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChHHHHHHHHHHHh
Confidence 4568999999999999999999999876 11 1123445555556678899999999999999999999999
Q ss_pred CCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccc--c-CCccEEEEEeec
Q 030233 84 DTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYS--L-GQRRWSIQSCSA 160 (181)
Q Consensus 84 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~Sa 160 (181)
.+|++++|+|+++... ....+.+..+ .. .++|+++++||+|+.+....+.+.+.+.... . .....+++++||
T Consensus 96 ~aD~~ilVvda~~g~~-~qt~e~l~~~-~~---~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~vSA 170 (482)
T 1wb1_A 96 IIDLALIVVDAKEGPK-TQTGEHMLIL-DH---FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISA 170 (482)
T ss_dssp SCCEEEEEEETTTCSC-HHHHHHHHHH-HH---TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCT
T ss_pred hCCEEEEEEecCCCcc-HHHHHHHHHH-HH---cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEEEEEC
Confidence 9999999999987321 1122222222 22 3678899999999976322222222221110 0 122568999999
Q ss_pred cCCCCHHHHHHHHHhhhh
Q 030233 161 ISGQGLYEGLDWLSNNIS 178 (181)
Q Consensus 161 ~~~~~i~~l~~~i~~~~~ 178 (181)
++|+|+++++++|.+.+.
T Consensus 171 ~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 171 KTGFGVDELKNLIITTLN 188 (482)
T ss_dssp TTCTTHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHhhc
Confidence 999999999999998653
No 142
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.91 E-value=1.8e-23 Score=151.52 Aligned_cols=156 Identities=18% Similarity=0.128 Sum_probs=107.0
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhcCCcccccCccce----eEEEEEECCeEEEEEEcCCCh-hhH--------HHHHhh
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGF----NVEAVEYKNKSFCVWDVGGQN-KIR--------ALWRHY 81 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~i~d~~g~~-~~~--------~~~~~~ 81 (181)
.+..+|+++|++|+|||||+|++++.......+.+++ ....+...+..+.+|||||.+ ... ......
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~ 85 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSS 85 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSC
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHHHH
Confidence 3456899999999999999999999875433322222 223455678899999999987 322 123456
Q ss_pred ccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCcc-EEEEEeec
Q 030233 82 FRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRR-WSIQSCSA 160 (181)
Q Consensus 82 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa 160 (181)
++.+|++++|+|+++ +.....++...+.. .+.|+++++||+|+... ...+.+..... ....+ ..++++||
T Consensus 86 l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~~---~~~P~ilvlNK~D~~~~--~~~~~~~l~~l-~~~~~~~~~i~iSA 156 (301)
T 1ega_A 86 IGDVELVIFVVEGTR---WTPDDEMVLNKLRE---GKAPVILAVNKVDNVQE--KADLLPHLQFL-ASQMNFLDIVPISA 156 (301)
T ss_dssp CCCEEEEEEEEETTC---CCHHHHHHHHHHHS---SSSCEEEEEESTTTCCC--HHHHHHHHHHH-HTTSCCSEEEECCT
T ss_pred HhcCCEEEEEEeCCC---CCHHHHHHHHHHHh---cCCCEEEEEECcccCcc--HHHHHHHHHHH-HHhcCcCceEEEEC
Confidence 678899999999976 33344455544443 47899999999998751 22222221110 01112 26999999
Q ss_pred cCCCCHHHHHHHHHhhhhc
Q 030233 161 ISGQGLYEGLDWLSNNISV 179 (181)
Q Consensus 161 ~~~~~i~~l~~~i~~~~~~ 179 (181)
++|.|++++++.+.+.+.+
T Consensus 157 ~~g~~v~~l~~~i~~~l~~ 175 (301)
T 1ega_A 157 ETGLNVDTIAAIVRKHLPE 175 (301)
T ss_dssp TTTTTHHHHHHHHHTTCCB
T ss_pred CCCCCHHHHHHHHHHhCCc
Confidence 9999999999999987654
No 143
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.90 E-value=2.2e-23 Score=151.98 Aligned_cols=133 Identities=23% Similarity=0.300 Sum_probs=106.2
Q ss_pred CccceeEEEEEECCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECC----------CcccHHHHHHHHHHHHcCCCC
Q 030233 47 PTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSS----------DRERISEARNELHQILSDNEL 116 (181)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~s~~~~~~~~~~~~~~~~~ 116 (181)
+|.|+....+...+..+++|||+|++.++..|..++++++++|+|+|++ +..++.+...|+..++.....
T Consensus 147 ~TiGi~~~~~~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~ 226 (340)
T 4fid_A 147 KTTGIHEYDFVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFL 226 (340)
T ss_dssp CCCSCEEEEEESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGG
T ss_pred ceeeeEEEEEEeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhcc
Confidence 3567777778888999999999999999999999999999999999998 678999999999999988777
Q ss_pred CCCeEEEEEeCCCCCCC-----------------CCHHHHHhhhCccc-----------cCC-----------ccEEEEE
Q 030233 117 SNAALLVFANKQDLPNV-----------------MPTAEVADKLELYS-----------LGQ-----------RRWSIQS 157 (181)
Q Consensus 117 ~~~piilv~nK~D~~~~-----------------~~~~~~~~~~~~~~-----------~~~-----------~~~~~~~ 157 (181)
.+.|+++++||+|+..+ ...++..+.+.... ... +.+.+++
T Consensus 227 ~~~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~ 306 (340)
T 4fid_A 227 KGAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNP 306 (340)
T ss_dssp TTSEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEE
T ss_pred CCCeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEE
Confidence 88999999999997531 12222222111111 111 4688999
Q ss_pred eeccCCCCHHHHHHHHHhhhhc
Q 030233 158 CSAISGQGLYEGLDWLSNNISV 179 (181)
Q Consensus 158 ~Sa~~~~~i~~l~~~i~~~~~~ 179 (181)
+||+++.||+.+|+.+.+.+.+
T Consensus 307 TsA~dt~nv~~vF~~v~~~Il~ 328 (340)
T 4fid_A 307 TNATDGSNIKRVFMLAVDVIMK 328 (340)
T ss_dssp ECTTCHHHHHHHHHHHHHHHHH
T ss_pred EEeeCcHHHHHHHHHHHHHHHH
Confidence 9999999999999999887653
No 144
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.90 E-value=1.7e-23 Score=159.01 Aligned_cols=150 Identities=16% Similarity=0.132 Sum_probs=100.2
Q ss_pred CccEEEEEcCCCCChHHHHHhhhcCCccccc--C--ccceeEEEEEECCeEEEEEEcCCChhhHHHHH--------hhcc
Q 030233 16 CRIKLLMVGLDASGKTTILYKMKLGEIVTTT--P--TIGFNVEAVEYKNKSFCVWDVGGQNKIRALWR--------HYFR 83 (181)
Q Consensus 16 ~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~--------~~~~ 83 (181)
..++|+++|++|+|||||+|++++....... + |..+....+.+.+..+.+|||||...+..... ..+.
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~~ 302 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQVEKIGVERSRQAAN 302 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC--------------------CCCC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEECCccccchhHHHHHHHHHHhhhhh
Confidence 4588999999999999999999986533222 2 22233345667889999999999766543322 3567
Q ss_pred CCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCC
Q 030233 84 DTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISG 163 (181)
Q Consensus 84 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (181)
.+|++++|+|++++.+... ..++..+ ...|+++|+||+|+.+..... . . ... ....+++++||++|
T Consensus 303 ~aD~vl~VvD~s~~~~~~~-~~i~~~l------~~~piivV~NK~Dl~~~~~~~---~-~--~~~-~~~~~~i~iSAktg 368 (462)
T 3geh_A 303 TADLVLLTIDAATGWTTGD-QEIYEQV------KHRPLILVMNKIDLVEKQLIT---S-L--EYP-ENITQIVHTAAAQK 368 (462)
T ss_dssp SCSEEEEEEETTTCSCHHH-HHHHHHH------TTSCEEEEEECTTSSCGGGST---T-C--CCC-TTCCCEEEEBTTTT
T ss_pred cCCEEEEEeccCCCCCHHH-HHHHHhc------cCCcEEEEEECCCCCcchhhH---H-H--HHh-ccCCcEEEEECCCC
Confidence 8999999999998766544 3344433 236999999999987632221 1 1 100 13457999999999
Q ss_pred CCHHHHHHHHHhhhhc
Q 030233 164 QGLYEGLDWLSNNISV 179 (181)
Q Consensus 164 ~~i~~l~~~i~~~~~~ 179 (181)
+|+++++++|.+.+..
T Consensus 369 ~Gi~eL~~~i~~~~~~ 384 (462)
T 3geh_A 369 QGIDSLETAILEIVQT 384 (462)
T ss_dssp BSHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHhc
Confidence 9999999999988754
No 145
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.90 E-value=3.3e-23 Score=156.13 Aligned_cols=160 Identities=16% Similarity=0.115 Sum_probs=108.9
Q ss_pred CCCccEEEEEcCCCCChHHHHHhhhcCCc----cc--ccCccceeEEEEEE---------------C--------CeEEE
Q 030233 14 PQCRIKLLMVGLDASGKTTILYKMKLGEI----VT--TTPTIGFNVEAVEY---------------K--------NKSFC 64 (181)
Q Consensus 14 ~~~~~~i~~~G~~~~GKssl~~~~~~~~~----~~--~~~~~~~~~~~~~~---------------~--------~~~~~ 64 (181)
.+..++|+++|++++|||||++++.+... .+ ...|....+....+ . ...+.
T Consensus 7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 86 (410)
T 1kk1_A 7 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS 86 (410)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEE
Confidence 45578999999999999999999986431 11 12255443333222 0 16899
Q ss_pred EEEcCCChhhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC----HHHHH
Q 030233 65 VWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMP----TAEVA 140 (181)
Q Consensus 65 i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~----~~~~~ 140 (181)
+|||||+++|.......+..+|++++|+|+++........+.+..+... ...|+++++||+|+.+... .+++.
T Consensus 87 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~---~~~~iivviNK~Dl~~~~~~~~~~~~i~ 163 (410)
T 1kk1_A 87 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII---GQKNIIIAQNKIELVDKEKALENYRQIK 163 (410)
T ss_dssp EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHHHHHHHHHHHH
T ss_pred EEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHc---CCCcEEEEEECccCCCHHHHHHHHHHHH
Confidence 9999999999888888888999999999998642122222222222111 2368999999999876321 12222
Q ss_pred hhhCccccCCccEEEEEeeccCCCCHHHHHHHHHhhhh
Q 030233 141 DKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNIS 178 (181)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~ 178 (181)
+.+... .....+++++||++|+|+++++++|.+.+.
T Consensus 164 ~~l~~~--~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~ 199 (410)
T 1kk1_A 164 EFIEGT--VAENAPIIPISALHGANIDVLVKAIEDFIP 199 (410)
T ss_dssp HHHTTS--TTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred HHHHhc--CcCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 222211 124568999999999999999999998664
No 146
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.90 E-value=9.8e-23 Score=157.16 Aligned_cols=114 Identities=16% Similarity=0.126 Sum_probs=88.6
Q ss_pred CccEEEEEcCCCCChHHHHHhhhcC------------------Cccc-------ccCccceeEEEEEECCeEEEEEEcCC
Q 030233 16 CRIKLLMVGLDASGKTTILYKMKLG------------------EIVT-------TTPTIGFNVEAVEYKNKSFCVWDVGG 70 (181)
Q Consensus 16 ~~~~i~~~G~~~~GKssl~~~~~~~------------------~~~~-------~~~~~~~~~~~~~~~~~~~~i~d~~g 70 (181)
+..+|+++|++++|||||+++++.. .... ...|.......+.+.+..+.+|||||
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG 91 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPG 91 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCC
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCC
Confidence 4568999999999999999999621 1111 23345556667788999999999999
Q ss_pred ChhhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC
Q 030233 71 QNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVM 134 (181)
Q Consensus 71 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~ 134 (181)
+.++...+...++.+|++|+|+|+++..+.+....| ..+. . .++|+++|+||+|+....
T Consensus 92 ~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~-~~~~-~---~~iPiivviNK~Dl~~~~ 150 (528)
T 3tr5_A 92 HADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLM-EVCR-L---RHTPIMTFINKMDRDTRP 150 (528)
T ss_dssp STTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHH-HHHH-T---TTCCEEEEEECTTSCCSC
T ss_pred chhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHH-H---cCCCEEEEEeCCCCcccc
Confidence 999999999999999999999999987665554433 3332 2 378999999999997543
No 147
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.90 E-value=1.6e-22 Score=149.60 Aligned_cols=159 Identities=21% Similarity=0.134 Sum_probs=106.1
Q ss_pred ccE-EEEEcCCCCChHHHHHhhhcCCcc---cccCccceeEEEEEECCeEEEEEEcCCC---------hhhHHHHHhhcc
Q 030233 17 RIK-LLMVGLDASGKTTILYKMKLGEIV---TTTPTIGFNVEAVEYKNKSFCVWDVGGQ---------NKIRALWRHYFR 83 (181)
Q Consensus 17 ~~~-i~~~G~~~~GKssl~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~d~~g~---------~~~~~~~~~~~~ 83 (181)
.++ |+++|.+|+|||||+|++++.... ....|.+.....+.+.+..+.+|||+|. +.+..... .+.
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f~~tl~-~~~ 256 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAFFVTLS-EAK 256 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHHHHHHH-GGG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHHHHHHH-HHH
Confidence 355 999999999999999999987742 2345666667778888899999999996 23444433 567
Q ss_pred CCCEEEEEEECCCcc--cHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHH-HHhh--hCccccCCccEEEEEe
Q 030233 84 DTLGLTFVVDSSDRE--RISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAE-VADK--LELYSLGQRRWSIQSC 158 (181)
Q Consensus 84 ~~d~ii~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~ 158 (181)
.+|++++|+|++++. .......+.. ++......+.|+++|+||+|+.+.. ... .... +... ......+++++
T Consensus 257 ~aD~il~VvD~s~~~~~~~~~~~~~~~-~L~~l~~~~~p~ilV~NK~Dl~~~~-~~~~~~~~~~l~~~-l~~~~~~~~~~ 333 (364)
T 2qtf_A 257 YSDALILVIDSTFSENLLIETLQSSFE-ILREIGVSGKPILVTLNKIDKINGD-LYKKLDLVEKLSKE-LYSPIFDVIPI 333 (364)
T ss_dssp GSSEEEEEEETTSCHHHHHHHHHHHHH-HHHHHTCCSCCEEEEEECGGGCCSC-HHHHHHHHHHHHHH-HCSCEEEEEEC
T ss_pred hCCEEEEEEECCCCcchHHHHHHHHHH-HHHHhCcCCCCEEEEEECCCCCCch-HHHHHHHHHHHHHH-hcCCCCcEEEE
Confidence 899999999998875 3443333332 2222222578999999999987543 221 1111 0000 00124468999
Q ss_pred eccCCCCHHHHHHHHHhhhhc
Q 030233 159 SAISGQGLYEGLDWLSNNISV 179 (181)
Q Consensus 159 Sa~~~~~i~~l~~~i~~~~~~ 179 (181)
||++|+|++++++.|.+.+..
T Consensus 334 SA~~g~gi~~L~~~I~~~l~~ 354 (364)
T 2qtf_A 334 SALKRTNLELLRDKIYQLATQ 354 (364)
T ss_dssp BTTTTBSHHHHHHHHHHHHHH
T ss_pred ECCCCcCHHHHHHHHHHHhcc
Confidence 999999999999999887653
No 148
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.89 E-value=4.2e-23 Score=153.14 Aligned_cols=146 Identities=7% Similarity=0.020 Sum_probs=110.7
Q ss_pred EEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEECCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCCcc
Q 030233 19 KLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRE 98 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~ 98 (181)
+|+++|++++|||||+++++ ....|.+.....+...+..+.+|||||+++|.......++.+|++++|+| + ..
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~-----~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~-~g 95 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG-----KKGTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-P-QG 95 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS-----EEEEESSSEEEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-T-TC
T ss_pred EEEEECCCCCCHHHHHHHHH-----hCCEEEEeeEEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-C-CC
Confidence 89999999999999999998 44556666666677788899999999999998888888899999999999 4 44
Q ss_pred cHHHHHHHHHHHHcCCCCCCCeE-EEEEe-CCCCCCCCCHH----HHHhhhCccccCCccEEEEE--eeccC---CCCHH
Q 030233 99 RISEARNELHQILSDNELSNAAL-LVFAN-KQDLPNVMPTA----EVADKLELYSLGQRRWSIQS--CSAIS---GQGLY 167 (181)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~pi-ilv~n-K~D~~~~~~~~----~~~~~~~~~~~~~~~~~~~~--~Sa~~---~~~i~ 167 (181)
.+....+++..+... ++|. ++++| |+|+ +....+ ++.+.+... ....+++++ +||++ |+|++
T Consensus 96 ~~~qt~e~~~~~~~~----~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~--~~~~~~ii~~~~SA~~~~~g~gi~ 168 (370)
T 2elf_A 96 LDAHTGECIIALDLL----GFKHGIIALTRSDST-HMHAIDELKAKLKVITSGT--VLQDWECISLNTNKSAKNPFEGVD 168 (370)
T ss_dssp CCHHHHHHHHHHHHT----TCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTS--TTTTCEEEECCCCTTSSSTTTTHH
T ss_pred CcHHHHHHHHHHHHc----CCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhc--CCCceEEEecccccccCcCCCCHH
Confidence 455555655554332 5666 88999 9998 422112 222222211 223568999 99999 99999
Q ss_pred HHHHHHHhhhh
Q 030233 168 EGLDWLSNNIS 178 (181)
Q Consensus 168 ~l~~~i~~~~~ 178 (181)
++++.|.+.+.
T Consensus 169 ~L~~~l~~~~~ 179 (370)
T 2elf_A 169 ELKARINEVAE 179 (370)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHhhcc
Confidence 99999987754
No 149
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.89 E-value=1.5e-22 Score=157.64 Aligned_cols=157 Identities=19% Similarity=0.190 Sum_probs=109.7
Q ss_pred CccEEEEEcCCCCChHHHHHhhhcCC--ccc----------------ccCccceeEEEEEEC-----CeEEEEEEcCCCh
Q 030233 16 CRIKLLMVGLDASGKTTILYKMKLGE--IVT----------------TTPTIGFNVEAVEYK-----NKSFCVWDVGGQN 72 (181)
Q Consensus 16 ~~~~i~~~G~~~~GKssl~~~~~~~~--~~~----------------~~~~~~~~~~~~~~~-----~~~~~i~d~~g~~ 72 (181)
+..+|+++|+.++|||||+++++... ... ...|.......+.+. ...+.+|||||+.
T Consensus 5 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~ 84 (600)
T 2ywe_A 5 NVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHV 84 (600)
T ss_dssp GEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcH
Confidence 34689999999999999999997521 110 111222222233332 3789999999999
Q ss_pred hhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCcc
Q 030233 73 KIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRR 152 (181)
Q Consensus 73 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 152 (181)
+|...+...++.+|++++|+|+++..+.+....|.... . .++|+++|+||+|+.... .+.....+... .+...
T Consensus 85 dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~-~----~~ipiIvviNKiDl~~a~-~~~v~~el~~~-lg~~~ 157 (600)
T 2ywe_A 85 DFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAV-E----QDLVIIPVINKIDLPSAD-VDRVKKQIEEV-LGLDP 157 (600)
T ss_dssp GGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHH-H----TTCEEEEEEECTTSTTCC-HHHHHHHHHHT-SCCCG
T ss_pred hHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHH-H----CCCCEEEEEeccCccccC-HHHHHHHHHHh-hCCCc
Confidence 99999999999999999999999887777766655443 2 378999999999997643 33322222111 11122
Q ss_pred EEEEEeeccCCCCHHHHHHHHHhhhhc
Q 030233 153 WSIQSCSAISGQGLYEGLDWLSNNISV 179 (181)
Q Consensus 153 ~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 179 (181)
.+++++||++|.|++++++++.+.+..
T Consensus 158 ~~vi~vSAktg~GI~~Lle~I~~~lp~ 184 (600)
T 2ywe_A 158 EEAILASAKEGIGIEEILEAIVNRIPP 184 (600)
T ss_dssp GGCEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred ccEEEEEeecCCCchHHHHHHHHhccc
Confidence 248999999999999999999988754
No 150
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.89 E-value=1.7e-22 Score=157.52 Aligned_cols=157 Identities=20% Similarity=0.212 Sum_probs=106.6
Q ss_pred CccEEEEEcCCCCChHHHHHhhhcCC--ccc----------------ccCccceeEEEEEEC-----CeEEEEEEcCCCh
Q 030233 16 CRIKLLMVGLDASGKTTILYKMKLGE--IVT----------------TTPTIGFNVEAVEYK-----NKSFCVWDVGGQN 72 (181)
Q Consensus 16 ~~~~i~~~G~~~~GKssl~~~~~~~~--~~~----------------~~~~~~~~~~~~~~~-----~~~~~i~d~~g~~ 72 (181)
+..+|+++|+.++|||||+++++... ... ...|.......+.+. ...+.+|||||+.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 34689999999999999999998632 110 011222222234343 3789999999999
Q ss_pred hhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCcc
Q 030233 73 KIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRR 152 (181)
Q Consensus 73 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 152 (181)
+|...+...+..+|++++|+|+++..+.+....|.... . .++|+++|+||+|+.... .+.....+... .+...
T Consensus 83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~-~----~~ipiIvViNKiDl~~a~-~~~v~~ei~~~-lg~~~ 155 (599)
T 3cb4_D 83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAM-E----MDLEVVPVLNKIDLPAAD-PERVAEEIEDI-VGIDA 155 (599)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHH-H----TTCEEEEEEECTTSTTCC-HHHHHHHHHHH-TCCCC
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH-H----CCCCEEEeeeccCccccc-HHHHHHHHHHH-hCCCc
Confidence 99999999999999999999999877776666655443 2 368999999999997643 33222222111 01111
Q ss_pred EEEEEeeccCCCCHHHHHHHHHhhhhc
Q 030233 153 WSIQSCSAISGQGLYEGLDWLSNNISV 179 (181)
Q Consensus 153 ~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 179 (181)
.+++++||++|.|++++++++.+.+..
T Consensus 156 ~~vi~vSAktg~GI~~Ll~~I~~~lp~ 182 (599)
T 3cb4_D 156 TDAVRCSAKTGVGVQDVLERLVRDIPP 182 (599)
T ss_dssp TTCEEECTTTCTTHHHHHHHHHHHSCC
T ss_pred ceEEEeecccCCCchhHHHHHhhcCCC
Confidence 248999999999999999999988754
No 151
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.89 E-value=9e-23 Score=153.52 Aligned_cols=160 Identities=20% Similarity=0.201 Sum_probs=112.1
Q ss_pred CCCccEEEEEcCCCCChHHHHHhhhcC--------Ccc------------cccCccceeEEEEEECCeEEEEEEcCCChh
Q 030233 14 PQCRIKLLMVGLDASGKTTILYKMKLG--------EIV------------TTTPTIGFNVEAVEYKNKSFCVWDVGGQNK 73 (181)
Q Consensus 14 ~~~~~~i~~~G~~~~GKssl~~~~~~~--------~~~------------~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~ 73 (181)
.+..++|+++|++++|||||++++++. .+. ....|.......+...+..+.+|||||+++
T Consensus 8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~ 87 (405)
T 2c78_A 8 TKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD 87 (405)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG
T ss_pred CCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHH
Confidence 346789999999999999999999873 111 112233343444555778999999999999
Q ss_pred hHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCe-EEEEEeCCCCCCCCC-HH----HHHhhhCccc
Q 030233 74 IRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAA-LLVFANKQDLPNVMP-TA----EVADKLELYS 147 (181)
Q Consensus 74 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~D~~~~~~-~~----~~~~~~~~~~ 147 (181)
|.......+..+|++++|+|+++... ....+++..+.. .++| +++++||+|+.+... .+ ++.+.+....
T Consensus 88 f~~~~~~~~~~aD~~ilVvda~~g~~-~qt~~~l~~~~~----~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~ 162 (405)
T 2c78_A 88 YIKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQ----VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYE 162 (405)
T ss_dssp GHHHHHHHHTTCSSEEEEEETTTCCC-HHHHHHHHHHHH----TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999987643 334455544433 2577 899999999975211 11 1222221111
Q ss_pred cCCccEEEEEeeccCCCC------------------HHHHHHHHHhhhh
Q 030233 148 LGQRRWSIQSCSAISGQG------------------LYEGLDWLSNNIS 178 (181)
Q Consensus 148 ~~~~~~~~~~~Sa~~~~~------------------i~~l~~~i~~~~~ 178 (181)
+.....+++++||++|.| ++++++.+.+.+.
T Consensus 163 ~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp 211 (405)
T 2c78_A 163 FPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIP 211 (405)
T ss_dssp SCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSC
T ss_pred ccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcC
Confidence 111246899999999987 8889998887654
No 152
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.89 E-value=1.7e-23 Score=158.68 Aligned_cols=151 Identities=17% Similarity=0.186 Sum_probs=101.2
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhcC--Ccc--------------------------------cccCccceeEEEEEECC
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKLG--EIV--------------------------------TTTPTIGFNVEAVEYKN 60 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~~--~~~--------------------------------~~~~~~~~~~~~~~~~~ 60 (181)
+..++|+++|++++|||||++++++. .+. ....|.......+...+
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~ 83 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK 83 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC
Confidence 45689999999999999999999864 221 11234444455566688
Q ss_pred eEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCCcccHHHHH-------HHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 030233 61 KSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEAR-------NELHQILSDNELSNAALLVFANKQDLPNV 133 (181)
Q Consensus 61 ~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-------~~~~~~~~~~~~~~~piilv~nK~D~~~~ 133 (181)
..+.+|||||+++|...+...+..+|++++|+|+++ .+|+... +.+...... ...|+++++||+|+.+.
T Consensus 84 ~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~---~~~~iivviNK~Dl~~~ 159 (435)
T 1jny_A 84 YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTM---GLDQLIVAVNKMDLTEP 159 (435)
T ss_dssp CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHT---TCTTCEEEEECGGGSSS
T ss_pred eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHc---CCCeEEEEEEcccCCCc
Confidence 899999999999999999999999999999999997 5565332 222222121 23468999999999763
Q ss_pred C-CH---H----HHHhhhCccccCCccEEEEEeeccCCCCHHHH
Q 030233 134 M-PT---A----EVADKLELYSLGQRRWSIQSCSAISGQGLYEG 169 (181)
Q Consensus 134 ~-~~---~----~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 169 (181)
. +. + ++........+....++++++||++|+|+.++
T Consensus 160 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~ 203 (435)
T 1jny_A 160 PYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHK 203 (435)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBC
T ss_pred cccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccc
Confidence 1 11 1 22222211111122468999999999999743
No 153
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.89 E-value=2.6e-22 Score=152.20 Aligned_cols=153 Identities=20% Similarity=0.241 Sum_probs=104.3
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhcCC--cc--------------------------------cccCccceeEEEEEECC
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKLGE--IV--------------------------------TTTPTIGFNVEAVEYKN 60 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~~~--~~--------------------------------~~~~~~~~~~~~~~~~~ 60 (181)
+..++|+++|++++|||||+++|++.. .. ....|.......+...+
T Consensus 15 k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~ 94 (439)
T 3j2k_7 15 KEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEK 94 (439)
T ss_pred CceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCC
Confidence 456899999999999999999996532 00 01234444555566788
Q ss_pred eEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCCccc---HH---HHHHHHHHHHcCCCCCCCe-EEEEEeCCCCCCC
Q 030233 61 KSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRER---IS---EARNELHQILSDNELSNAA-LLVFANKQDLPNV 133 (181)
Q Consensus 61 ~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~p-iilv~nK~D~~~~ 133 (181)
..+.+|||||+++|...+...+..+|++++|+|+++... |. ...+.+..+.. .++| +++++||+|+...
T Consensus 95 ~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~----~~v~~iIvviNK~Dl~~~ 170 (439)
T 3j2k_7 95 KHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT----AGVKHLIVLINKMDDPTV 170 (439)
T ss_pred eEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH----cCCCeEEEEeecCCCccc
Confidence 899999999999999999999999999999999987431 11 22222222222 2455 9999999998642
Q ss_pred CC----HHHHHhhh----CccccC-CccEEEEEeeccCCCCHHHHHH
Q 030233 134 MP----TAEVADKL----ELYSLG-QRRWSIQSCSAISGQGLYEGLD 171 (181)
Q Consensus 134 ~~----~~~~~~~~----~~~~~~-~~~~~~~~~Sa~~~~~i~~l~~ 171 (181)
.. .+++.+.+ ....+. ...++++++||++|.|++++.+
T Consensus 171 ~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 171 NWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred chHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 11 12222221 111111 1257899999999999999544
No 154
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.89 E-value=4.9e-22 Score=150.66 Aligned_cols=151 Identities=14% Similarity=0.101 Sum_probs=102.5
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhcCC---ccc---------------------------------ccCccceeEEEEEE
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKLGE---IVT---------------------------------TTPTIGFNVEAVEY 58 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~~~---~~~---------------------------------~~~~~~~~~~~~~~ 58 (181)
+..++|+++|++++|||||+++|++.. +.. ...|.......+..
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~ 101 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST 101 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence 446899999999999999999998653 110 01222333444555
Q ss_pred CCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--H
Q 030233 59 KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMP--T 136 (181)
Q Consensus 59 ~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~ 136 (181)
....+.+|||||+++|...+...+..+|++++|+|+++... ....+++..+... ...|+++|+||+|+.+... .
T Consensus 102 ~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~-~qt~~~l~~~~~~---~~~~iIvviNK~Dl~~~~~~~~ 177 (434)
T 1zun_B 102 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQ-TQTRRHSYIASLL---GIKHIVVAINKMDLNGFDERVF 177 (434)
T ss_dssp SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSC-HHHHHHHHHHHHT---TCCEEEEEEECTTTTTSCHHHH
T ss_pred CCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCeEEEEEEcCcCCcccHHHH
Confidence 78899999999999999998889999999999999987542 2333444333222 2347999999999975321 1
Q ss_pred HHHHhhhCc--cccC--CccEEEEEeeccCCCCHHHH
Q 030233 137 AEVADKLEL--YSLG--QRRWSIQSCSAISGQGLYEG 169 (181)
Q Consensus 137 ~~~~~~~~~--~~~~--~~~~~~~~~Sa~~~~~i~~l 169 (181)
+.+...... ...+ ....+++++||++|.|++++
T Consensus 178 ~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~ 214 (434)
T 1zun_B 178 ESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNK 214 (434)
T ss_dssp HHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSC
T ss_pred HHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccc
Confidence 112221111 0112 34578999999999999874
No 155
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.89 E-value=7.1e-23 Score=153.64 Aligned_cols=158 Identities=17% Similarity=0.101 Sum_probs=109.3
Q ss_pred CccEEEEEcCCCCChHHHHHhhhcCC-------cc------------cccCccceeEEEEEECCeEEEEEEcCCChhhHH
Q 030233 16 CRIKLLMVGLDASGKTTILYKMKLGE-------IV------------TTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRA 76 (181)
Q Consensus 16 ~~~~i~~~G~~~~GKssl~~~~~~~~-------~~------------~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~ 76 (181)
..++|+++|++++|||||++++++.. +. ....|.......+...+..+.+|||||+++|..
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~ 81 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK 81 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence 46899999999999999999998731 11 112233333334455678999999999999998
Q ss_pred HHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCe-EEEEEeCCCCCCCCCH-----HHHHhhhCccccCC
Q 030233 77 LWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAA-LLVFANKQDLPNVMPT-----AEVADKLELYSLGQ 150 (181)
Q Consensus 77 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~D~~~~~~~-----~~~~~~~~~~~~~~ 150 (181)
.....+..+|++++|+|+++....+ ..+.+..+.. .++| +++++||+|+.+.... +++.+.+....+..
T Consensus 82 ~~~~~~~~aD~~ilVvda~~g~~~q-t~e~l~~~~~----~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 156 (397)
T 1d2e_A 82 NMITGTAPLDGCILVVAANDGPMPQ-TREHLLLARQ----IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKG 156 (397)
T ss_dssp HHHHTSSCCSEEEEEEETTTCSCHH-HHHHHHHHHH----TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCT
T ss_pred HHHhhHhhCCEEEEEEECCCCCCHH-HHHHHHHHHH----cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCc
Confidence 8889999999999999998754333 2333333322 3677 7899999998752111 12222222111112
Q ss_pred ccEEEEEeeccCCCC----------HHHHHHHHHhhhh
Q 030233 151 RRWSIQSCSAISGQG----------LYEGLDWLSNNIS 178 (181)
Q Consensus 151 ~~~~~~~~Sa~~~~~----------i~~l~~~i~~~~~ 178 (181)
..++++++||++|.| ++++++.|.+.+.
T Consensus 157 ~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p 194 (397)
T 1d2e_A 157 EETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP 194 (397)
T ss_dssp TTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred ccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCC
Confidence 246899999999775 8999999988664
No 156
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.89 E-value=3e-22 Score=142.40 Aligned_cols=161 Identities=12% Similarity=0.155 Sum_probs=103.3
Q ss_pred CCCccEEEEEcCCCCChHHHHHhhhcCC-ccc-cc---CccceeEEEEEECCeEEEEEEcCCChhh-----------HHH
Q 030233 14 PQCRIKLLMVGLDASGKTTILYKMKLGE-IVT-TT---PTIGFNVEAVEYKNKSFCVWDVGGQNKI-----------RAL 77 (181)
Q Consensus 14 ~~~~~~i~~~G~~~~GKssl~~~~~~~~-~~~-~~---~~~~~~~~~~~~~~~~~~i~d~~g~~~~-----------~~~ 77 (181)
....++|+++|++|+|||||+|++++.. +.. .. .|.......+.+.+..+.+|||||...+ ...
T Consensus 19 ~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~ 98 (260)
T 2xtp_A 19 SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRC 98 (260)
T ss_dssp --CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHHHH
Confidence 3457899999999999999999999877 322 22 2334445556678899999999996543 223
Q ss_pred HHhhccCCCEEEEEEECCCcccH-HHHHHHHHHHHcCCCCCCCeEEEEEe-CCCCCCCCCHHH---------HHhhhCcc
Q 030233 78 WRHYFRDTLGLTFVVDSSDRERI-SEARNELHQILSDNELSNAALLVFAN-KQDLPNVMPTAE---------VADKLELY 146 (181)
Q Consensus 78 ~~~~~~~~d~ii~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~~piilv~n-K~D~~~~~~~~~---------~~~~~~~~ 146 (181)
....++.+|++++|+|+++.... .....++..+... . ...|+++++| |+|+... .... +.......
T Consensus 99 ~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~-~-~~~~~i~vv~nK~Dl~~~-~~~~~i~~~~~~~~~~~~~~~ 175 (260)
T 2xtp_A 99 YLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGE-D-AMGHTIVLFTHKEDLNGG-SLMDYMHDSDNKALSKLVAAC 175 (260)
T ss_dssp HHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCG-G-GGGGEEEEEECGGGGTTC-CHHHHHHHCCCHHHHHHHHHT
T ss_pred HHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCc-h-hhccEEEEEEcccccCCc-cHHHHHHhcchHHHHHHHHHh
Confidence 34467889999999999863222 2233344443321 1 1345665565 9999743 3332 11111111
Q ss_pred ccCCccEEE--EEeeccCCCCHHHHHHHHHhhhhc
Q 030233 147 SLGQRRWSI--QSCSAISGQGLYEGLDWLSNNISV 179 (181)
Q Consensus 147 ~~~~~~~~~--~~~Sa~~~~~i~~l~~~i~~~~~~ 179 (181)
......+ +++||++|.|++++|++|.+.+..
T Consensus 176 --~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~ 208 (260)
T 2xtp_A 176 --GGRICAFNNRAEGSNQDDQVKELMDCIEDLLME 208 (260)
T ss_dssp --TTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred --CCeEEEecCcccccccHHHHHHHHHHHHHHHHh
Confidence 1111012 889999999999999999988765
No 157
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.89 E-value=1.4e-22 Score=155.42 Aligned_cols=152 Identities=16% Similarity=0.156 Sum_probs=103.2
Q ss_pred CCCccEEEEEcCCCCChHHHHHhhhcCC--cc--------------------------------cccCccceeEEEEEEC
Q 030233 14 PQCRIKLLMVGLDASGKTTILYKMKLGE--IV--------------------------------TTTPTIGFNVEAVEYK 59 (181)
Q Consensus 14 ~~~~~~i~~~G~~~~GKssl~~~~~~~~--~~--------------------------------~~~~~~~~~~~~~~~~ 59 (181)
.+..++|+++|++++|||||+++|++.. +. ....|.......+...
T Consensus 30 ~k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 109 (483)
T 3p26_A 30 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH 109 (483)
T ss_dssp SCCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecC
Confidence 3457999999999999999999997652 10 0123444555566678
Q ss_pred CeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCCcccHH------HHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 030233 60 NKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERIS------EARNELHQILSDNELSNAALLVFANKQDLPNV 133 (181)
Q Consensus 60 ~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~------~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~ 133 (181)
+..+.+|||||+++|...+...+..+|++++|+|+++..+.. ...+.+...... ...|+|+|+||+|+.+.
T Consensus 110 ~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~---~~~~iIvviNK~Dl~~~ 186 (483)
T 3p26_A 110 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL---GIHNLIIAMNKMDNVDW 186 (483)
T ss_dssp SCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT---TCCCEEEEEECGGGGTT
T ss_pred CceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc---CCCcEEEEEECcCcccc
Confidence 899999999999999999999999999999999998764322 222222222222 23579999999998752
Q ss_pred C--CHHHHHhhhC----ccccCCccEEEEEeeccCCCCHHH
Q 030233 134 M--PTAEVADKLE----LYSLGQRRWSIQSCSAISGQGLYE 168 (181)
Q Consensus 134 ~--~~~~~~~~~~----~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (181)
. ..+++...+. ........++++++||++|+|+++
T Consensus 187 ~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 187 SQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred hHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 1 1122222221 111122367899999999999975
No 158
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.89 E-value=3e-24 Score=165.17 Aligned_cols=158 Identities=15% Similarity=0.109 Sum_probs=110.6
Q ss_pred CccEEEEEcCCCCChHHHHHhhhcCCcccc-cC--ccceeEEEEEE-CCeEEEEEEcCCChhhHHHHHhhccCCCEEEEE
Q 030233 16 CRIKLLMVGLDASGKTTILYKMKLGEIVTT-TP--TIGFNVEAVEY-KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFV 91 (181)
Q Consensus 16 ~~~~i~~~G~~~~GKssl~~~~~~~~~~~~-~~--~~~~~~~~~~~-~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v 91 (181)
+.++|+++|++++|||||+++|.+..+... .+ |..+....+.. .+..+.+|||||++.|..++...+..+|++++|
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vILV 82 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRARGTQVTDIVILV 82 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTSBBSSSBSBSSCEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHHHHHHHccCCEEEEE
Confidence 568899999999999999999987653221 11 22222222333 455799999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC---HHHHHhhhCccccCCccEEEEEeeccCCCCHHH
Q 030233 92 VDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMP---TAEVADKLELYSLGQRRWSIQSCSAISGQGLYE 168 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (181)
+|+++....+.. ..+..+.. .++|+++++||+|+.+... ..++..............+++++||++|+|+++
T Consensus 83 VDa~dg~~~qt~-e~l~~~~~----~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~e 157 (537)
T 3izy_P 83 VAADDGVMKQTV-ESIQHAKD----AHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMMA 157 (537)
T ss_dssp CBSSSCCCHHHH-HHHHHHHT----TTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSHH
T ss_pred EECCCCccHHHH-HHHHHHHH----cCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCchh
Confidence 999875544333 33333332 3689999999999865321 122222111111112357899999999999999
Q ss_pred HHHHHHhhhh
Q 030233 169 GLDWLSNNIS 178 (181)
Q Consensus 169 l~~~i~~~~~ 178 (181)
+++++...+.
T Consensus 158 Lle~I~~l~~ 167 (537)
T 3izy_P 158 LAEATIALAE 167 (537)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHhhh
Confidence 9999987653
No 159
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.89 E-value=1.3e-23 Score=142.93 Aligned_cols=124 Identities=26% Similarity=0.421 Sum_probs=94.5
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhcCCcccc----cCccceeEEEEEECCeEEEEEEcCCChhhHHHHHhhccC----CC
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKLGEIVTT----TPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRD----TL 86 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~----~d 86 (181)
.+.++|+++|++|+|||||++++++..+... .++... .+....+.+|||||++.+...+..++.. +|
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 120 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA-----DYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVK 120 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC-----------------CCCCTTCSEEEETTCCBSSCCHHHHHHHHGGGEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceee-----eecCCeEEEEECCCCchHHHHHHHHHHhhcccCC
Confidence 4678999999999999999999998875432 222221 2256788999999998876666666654 89
Q ss_pred EEEEEEECC-CcccHHHHHHHHHHHHcCC---CCCCCeEEEEEeCCCCCCCCCHHHHHhhh
Q 030233 87 GLTFVVDSS-DRERISEARNELHQILSDN---ELSNAALLVFANKQDLPNVMPTAEVADKL 143 (181)
Q Consensus 87 ~ii~v~d~~-~~~s~~~~~~~~~~~~~~~---~~~~~piilv~nK~D~~~~~~~~~~~~~~ 143 (181)
++++|+|++ +++++.....|+..++... ...+.|+++|+||+|+.+....+++...+
T Consensus 121 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l 181 (193)
T 2ged_A 121 GLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDAL 181 (193)
T ss_dssp EEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHH
T ss_pred EEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHHHHHHHH
Confidence 999999999 8899999888888776532 22579999999999998877776666554
No 160
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.88 E-value=6e-23 Score=160.09 Aligned_cols=156 Identities=21% Similarity=0.153 Sum_probs=107.7
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhcCCcccc-----cCccceeEEEEE----------------ECCeEEEEEEcCCChh
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKLGEIVTT-----TPTIGFNVEAVE----------------YKNKSFCVWDVGGQNK 73 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~-----~~~~~~~~~~~~----------------~~~~~~~i~d~~g~~~ 73 (181)
.+.++|+++|++++|||||++++.+...... .++.+....... +....+.+|||||+++
T Consensus 3 ~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~ 82 (594)
T 1g7s_A 3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA 82 (594)
T ss_dssp ECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred CCCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence 4578999999999999999999987654322 223343332211 1122699999999999
Q ss_pred hHHHHHhhccCCCEEEEEEECCC---cccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--------------H
Q 030233 74 IRALWRHYFRDTLGLTFVVDSSD---RERISEARNELHQILSDNELSNAALLVFANKQDLPNVMP--------------T 136 (181)
Q Consensus 74 ~~~~~~~~~~~~d~ii~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--------------~ 136 (181)
|..++...++.+|++|+|+|+++ +.++.... .+.. .++|+++++||+|+.+... .
T Consensus 83 F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~----~l~~----~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~ 154 (594)
T 1g7s_A 83 FTTLRKRGGALADLAILIVDINEGFKPQTQEALN----ILRM----YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQD 154 (594)
T ss_dssp CTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHH----HHHH----TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSC
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHH----HHHH----cCCeEEEEecccccccccccccCCchHHHHHHhH
Confidence 99888888899999999999998 44444332 2222 4789999999999864211 0
Q ss_pred H-----------HHHhhhCcccc----------CCccEEEEEeeccCCCCHHHHHHHHHhhhh
Q 030233 137 A-----------EVADKLELYSL----------GQRRWSIQSCSAISGQGLYEGLDWLSNNIS 178 (181)
Q Consensus 137 ~-----------~~~~~~~~~~~----------~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~ 178 (181)
+ ++...+....+ .....+++++||++|+|++++++++...+.
T Consensus 155 ~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~ 217 (594)
T 1g7s_A 155 IQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ 217 (594)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcc
Confidence 1 11111110000 124568999999999999999999987653
No 161
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.88 E-value=9.7e-23 Score=159.69 Aligned_cols=152 Identities=16% Similarity=0.157 Sum_probs=104.4
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhcCCcc--c--------------------------------ccCccceeEEEEEECC
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKLGEIV--T--------------------------------TTPTIGFNVEAVEYKN 60 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~--~--------------------------------~~~~~~~~~~~~~~~~ 60 (181)
+..++|+++|++++|||||+++|++.... . ...|.......+...+
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~ 244 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 244 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence 45789999999999999999999865311 0 1234445555677788
Q ss_pred eEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCCcc---cH---HHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC
Q 030233 61 KSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRE---RI---SEARNELHQILSDNELSNAALLVFANKQDLPNVM 134 (181)
Q Consensus 61 ~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~---~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~ 134 (181)
..+.+|||||+++|...+...++.+|++|+|+|+++.. ++ ......+...... ...|+|+|+||+|+.+..
T Consensus 245 ~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~l---gi~~iIVVvNKiDl~~~~ 321 (611)
T 3izq_1 245 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL---GIHNLIIAMNKMDNVDWS 321 (611)
T ss_dssp CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTT---TCCEEEEEEECTTTTTTC
T ss_pred ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHc---CCCeEEEEEecccccchh
Confidence 89999999999999999999999999999999998631 11 1222222222222 235699999999987621
Q ss_pred C--HHHHHhhh----CccccCCccEEEEEeeccCCCCHHHH
Q 030233 135 P--TAEVADKL----ELYSLGQRRWSIQSCSAISGQGLYEG 169 (181)
Q Consensus 135 ~--~~~~~~~~----~~~~~~~~~~~~~~~Sa~~~~~i~~l 169 (181)
. .+++...+ .........++++++||++|.|++++
T Consensus 322 ~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 322 QQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred HHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 1 12222222 11111223568999999999999865
No 162
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.88 E-value=6.2e-22 Score=139.73 Aligned_cols=158 Identities=11% Similarity=0.102 Sum_probs=101.5
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhcCCcccc-----cCccceeEEEEEECCeEEEEEEcCCC--------hhhHHHHHhh
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKLGEIVTT-----TPTIGFNVEAVEYKNKSFCVWDVGGQ--------NKIRALWRHY 81 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~i~d~~g~--------~~~~~~~~~~ 81 (181)
...++|+++|.+|+|||||+|++++...... ..|...........+..+.+|||||. +.+......+
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~~i~~~ 98 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSSQVSKTDPGCEERGHC 98 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTEEEEEEECCSCSSTTHHHHSTTSHHHHHH
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCcEEEEEECCCCCCCCCCcHHHHHHHHHHH
Confidence 4679999999999999999999998874322 13334445566778999999999995 3333333333
Q ss_pred c----cCCCEEEEEEECCCcccHH-HHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHH---------HhhhCccc
Q 030233 82 F----RDTLGLTFVVDSSDRERIS-EARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEV---------ADKLELYS 147 (181)
Q Consensus 82 ~----~~~d~ii~v~d~~~~~s~~-~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~---------~~~~~~~~ 147 (181)
+ +.+|++++|+|+++....+ ....++..+... ...+.|+++++||+|+... +.++. ......
T Consensus 99 ~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~-~~~~~~iilv~nK~Dl~~~-~~~~~l~~~~~~~l~~l~~~-- 174 (247)
T 3lxw_A 99 YLLSAPGPHALLLVTQLGRFTAQDQQAVRQVRDMFGE-DVLKWMVIVFTRKEDLAGG-SLHDYVSNTENRALRELVAE-- 174 (247)
T ss_dssp HHHHTTCCSEEEEEEETTBCCHHHHHHHHHHHHHHCG-GGGGGEEEEEECGGGGTTC-CHHHHHHHCCCHHHHHHHHH--
T ss_pred HHhcCCCCCEEEEEEeCCCCCHHHHHHHHHHHHHhCh-hhhccEEEEEEchHhcCCC-CHHHHHhhcccHHHHHHHHH--
Confidence 3 8999999999997532211 223334433221 2236899999999999753 22221 221111
Q ss_pred cCCccEEEEEeeccC-----CCCHHHHHHHHHhhhhc
Q 030233 148 LGQRRWSIQSCSAIS-----GQGLYEGLDWLSNNISV 179 (181)
Q Consensus 148 ~~~~~~~~~~~Sa~~-----~~~i~~l~~~i~~~~~~ 179 (181)
.+..+..+++.. +.|+++|++.+.+.+.+
T Consensus 175 ---~g~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~ 208 (247)
T 3lxw_A 175 ---CGGRVCAFDNRATGREQEAQVEQLLGMVEGLVLE 208 (247)
T ss_dssp ---TTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---cCCeEEEEeCCCCccccHHHHHHHHHHHHHHHHH
Confidence 111244444332 68999999999888764
No 163
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.88 E-value=1.2e-22 Score=145.44 Aligned_cols=157 Identities=12% Similarity=0.184 Sum_probs=90.4
Q ss_pred CccEEEEEcCCCCChHHHHHhhhcCCcc--cc-------cCccceeEEEEEEC----CeEEEEEEcCCCh-------hhH
Q 030233 16 CRIKLLMVGLDASGKTTILYKMKLGEIV--TT-------TPTIGFNVEAVEYK----NKSFCVWDVGGQN-------KIR 75 (181)
Q Consensus 16 ~~~~i~~~G~~~~GKssl~~~~~~~~~~--~~-------~~~~~~~~~~~~~~----~~~~~i~d~~g~~-------~~~ 75 (181)
..++|+++|.+|+|||||+|++++.... .+ .+|.+.+....... ...+.+|||||.. .+.
T Consensus 7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~ 86 (274)
T 3t5d_A 7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ 86 (274)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTH
T ss_pred cEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHH
Confidence 4789999999999999999998876622 22 45566555555442 2489999999962 233
Q ss_pred HHH-------Hhhcc-------------CCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC
Q 030233 76 ALW-------RHYFR-------------DTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMP 135 (181)
Q Consensus 76 ~~~-------~~~~~-------------~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~ 135 (181)
.+. ..++. .+|+++++++.+.. ++......+...+.. ++|+++|+||+|+.....
T Consensus 87 ~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~-~~~~~d~~~l~~l~~----~~pvi~V~nK~D~~~~~e 161 (274)
T 3t5d_A 87 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGH-GLKPLDIEFMKRLHE----KVNIIPLIAKADTLTPEE 161 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCS-SCCHHHHHHHHHHTT----TSCEEEEESSGGGSCHHH
T ss_pred HHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCC-CCCHHHHHHHHHHhc----cCCEEEEEeccCCCCHHH
Confidence 332 33333 27799999987642 233333333333333 789999999999875333
Q ss_pred HHHHHhhhCccccCCccEEEEEeeccCCCCHHHHHHHHHhhhh
Q 030233 136 TAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNIS 178 (181)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~ 178 (181)
.......... .....+++++++||.+++|+++++++|.+.+.
T Consensus 162 ~~~~~~~i~~-~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~p 203 (274)
T 3t5d_A 162 CQQFKKQIMK-EIQEHKIKIYEFPETDDEEENKLVKKIKDRLP 203 (274)
T ss_dssp HHHHHHHHHH-HHHHTTCCCCCC-----------CHHHHHTCS
T ss_pred HHHHHHHHHH-HHHHcCCeEEcCCCCCChhHHHHHHHHhcCCC
Confidence 3222222211 11234557899999999999999999987653
No 164
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.87 E-value=6.8e-22 Score=138.96 Aligned_cols=159 Identities=12% Similarity=0.091 Sum_probs=99.9
Q ss_pred CCCccEEEEEcCCCCChHHHHHhhhcCCcccc-----cCccceeEEEEEECCeEEEEEEcCCC-----------hhhHHH
Q 030233 14 PQCRIKLLMVGLDASGKTTILYKMKLGEIVTT-----TPTIGFNVEAVEYKNKSFCVWDVGGQ-----------NKIRAL 77 (181)
Q Consensus 14 ~~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~i~d~~g~-----------~~~~~~ 77 (181)
....++|+++|++|+|||||+|++++..+... ..|.......+.+.+..+.+|||||. ..+...
T Consensus 26 ~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~ 105 (239)
T 3lxx_A 26 RNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEIIRC 105 (239)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHHHHH
Confidence 45679999999999999999999999875332 22334445566778899999999993 234455
Q ss_pred HHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCC-CCCCCeEEEEEeCCCCCCCCCHH--------HHHhhhCcccc
Q 030233 78 WRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDN-ELSNAALLVFANKQDLPNVMPTA--------EVADKLELYSL 148 (181)
Q Consensus 78 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~nK~D~~~~~~~~--------~~~~~~~~~~~ 148 (181)
....++.+|++++|+|+++.... ...++..+.... .....|+++|+||+|+......+ .+.....
T Consensus 106 ~~~~~~~~~~~l~v~d~~~~~~~--~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~---- 179 (239)
T 3lxx_A 106 ILLTSPGPHALLLVVPLGRYTEE--EHKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMD---- 179 (239)
T ss_dssp HHHTTTCCSEEEEEEETTCCSSH--HHHHHHHHHHHHHHHHGGGEEEEEECGGGC------------CHHHHHHHH----
T ss_pred HHhcCCCCcEEEEEeeCCCCCHH--HHHHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHH----
Confidence 55666788999999999764432 222333322110 00235999999999987643333 1222211
Q ss_pred CCccEEEEEeecc-----CCCCHHHHHHHHHhhhhc
Q 030233 149 GQRRWSIQSCSAI-----SGQGLYEGLDWLSNNISV 179 (181)
Q Consensus 149 ~~~~~~~~~~Sa~-----~~~~i~~l~~~i~~~~~~ 179 (181)
..+..++.++.. ++.++.++++.+.+.+.+
T Consensus 180 -~~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~ 214 (239)
T 3lxx_A 180 -IFGDRYCALNNKATGAEQEAQRAQLLGLIQRVVRE 214 (239)
T ss_dssp -HHSSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HcCCEEEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence 112235555544 347999999998877654
No 165
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.87 E-value=1.3e-21 Score=141.78 Aligned_cols=155 Identities=16% Similarity=0.157 Sum_probs=100.9
Q ss_pred CccEEEEEcCCCCChHHHHHhhhcCCcccc-------cCcc-----------------c---eeE---------------
Q 030233 16 CRIKLLMVGLDASGKTTILYKMKLGEIVTT-------TPTI-----------------G---FNV--------------- 53 (181)
Q Consensus 16 ~~~~i~~~G~~~~GKssl~~~~~~~~~~~~-------~~~~-----------------~---~~~--------------- 53 (181)
..++|+++|.+|+|||||+|++++..+... .|+. | ++.
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i~ 104 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 104 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHC
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHhc
Confidence 467999999999999999999999875311 1210 0 000
Q ss_pred ------------EEEEE-CCeEEEEEEcCCCh-------------hhHHHHHhhccCCCEEE-EEEECCCcccHHHHHHH
Q 030233 54 ------------EAVEY-KNKSFCVWDVGGQN-------------KIRALWRHYFRDTLGLT-FVVDSSDRERISEARNE 106 (181)
Q Consensus 54 ------------~~~~~-~~~~~~i~d~~g~~-------------~~~~~~~~~~~~~d~ii-~v~d~~~~~s~~~~~~~ 106 (181)
..+.. ....+.+|||||.. .+......+++.++.++ +|+|+++..+......+
T Consensus 105 g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~ 184 (299)
T 2aka_B 105 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKI 184 (299)
T ss_dssp SSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHH
T ss_pred ccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHH
Confidence 00111 13689999999953 45567778888888776 79999865433332233
Q ss_pred HHHHHcCCCCCCCeEEEEEeCCCCCCCCC-HHHHHhhhCccccCCccEEEEEeeccCCCCHHHHHHHHHh
Q 030233 107 LHQILSDNELSNAALLVFANKQDLPNVMP-TAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSN 175 (181)
Q Consensus 107 ~~~~~~~~~~~~~piilv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~ 175 (181)
+..+ .. .+.|+++|+||+|+.+... ..+..... .........+++++||++|.|++++++++.+
T Consensus 185 ~~~~-~~---~~~~~i~V~NK~Dl~~~~~~~~~~~~~~-~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~ 249 (299)
T 2aka_B 185 AKEV-DP---QGQRTIGVITKLDLMDEGTDARDVLENK-LLPLRRGYIGVVNRSQKDIDGKKDITAALAA 249 (299)
T ss_dssp HHHH-CT---TCSSEEEEEECGGGSCTTCCCHHHHTTC-SSCCTTCEEECCCCCCBCTTSCBCHHHHHHH
T ss_pred HHHh-CC---CCCeEEEEEEccccCCCCchHHHHHhCC-cCcCCCCcEEEECCChhhccccccHHHHHHH
Confidence 3333 22 4789999999999875433 22221110 1111112357999999999999999999865
No 166
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.87 E-value=1e-23 Score=160.99 Aligned_cols=153 Identities=21% Similarity=0.232 Sum_probs=106.7
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhcCCcccc---cCccceeEEEEEECCeEEEEEEcCCChhhHHHHHhhccCCCEEEEE
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKLGEIVTT---TPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFV 91 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v 91 (181)
.+.++|+++|++++|||||++++.+..+... ..|.......+.+.+..+.+|||||++.|..++...+..+|++++|
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aILV 81 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETENGMITFLDTPGHAAFTSMRARGAQATDIVVLV 81 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTTSBCSSSBSCSSEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECCEEEEEEECCCcHHHHHHHHHHHhhCCEEEEE
Confidence 4678999999999999999999987543221 1222222233444667899999999999998888888999999999
Q ss_pred EECCCc---ccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCcc--ccCC--ccEEEEEeeccCCC
Q 030233 92 VDSSDR---ERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELY--SLGQ--RRWSIQSCSAISGQ 164 (181)
Q Consensus 92 ~d~~~~---~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~Sa~~~~ 164 (181)
+|+++. ++... +..+.. .++|+++++||+|+..... +.+...+... .... ...+++++||++|+
T Consensus 82 Vda~~g~~~qT~e~----l~~~~~----~~vPiIVviNKiDl~~~~~-~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~ 152 (501)
T 1zo1_I 82 VAADDGVMPQTIEA----IQHAKA----AQVPVVVAVNKIDKPEADP-DRVKNELSQYGILPEEWGGESQFVHVSAKAGT 152 (501)
T ss_dssp EETTTBSCTTTHHH----HHHHHH----TTCCEEEEEECSSSSTTCC-CCTTCCCCCCCCCTTCCSSSCEEEECCTTTCT
T ss_pred eecccCccHHHHHH----HHHHHh----cCceEEEEEEeccccccCH-HHHHHHHHHhhhhHHHhCCCccEEEEeeeecc
Confidence 999873 33332 222222 3689999999999965321 1122211110 0011 23689999999999
Q ss_pred CHHHHHHHHHhh
Q 030233 165 GLYEGLDWLSNN 176 (181)
Q Consensus 165 ~i~~l~~~i~~~ 176 (181)
|++++++++...
T Consensus 153 gI~eLle~I~~~ 164 (501)
T 1zo1_I 153 GIDELLDAILLQ 164 (501)
T ss_dssp TCTTHHHHTTTT
T ss_pred Ccchhhhhhhhh
Confidence 999999998764
No 167
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.87 E-value=6.1e-22 Score=150.87 Aligned_cols=150 Identities=17% Similarity=0.147 Sum_probs=103.2
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhcC--Ccc--------------------------------cccCccceeEEEEEECC
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKLG--EIV--------------------------------TTTPTIGFNVEAVEYKN 60 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~~--~~~--------------------------------~~~~~~~~~~~~~~~~~ 60 (181)
+..++|+++|++++|||||+++|++. .+. ....|.......+...+
T Consensus 5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~ 84 (458)
T 1f60_A 5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (458)
T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS
T ss_pred CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCC
Confidence 45689999999999999999999864 111 12345555566677788
Q ss_pred eEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCCcc---cHH---HHHHHHHHHHcCCCCCCC-eEEEEEeCCCCCCC
Q 030233 61 KSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRE---RIS---EARNELHQILSDNELSNA-ALLVFANKQDLPNV 133 (181)
Q Consensus 61 ~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~~-piilv~nK~D~~~~ 133 (181)
..+.+|||||+++|.......+..+|++|+|+|+++.. +|+ ...+.+..... .++ ++++++||+|+.+.
T Consensus 85 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~----~~v~~iivviNK~Dl~~~ 160 (458)
T 1f60_A 85 YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT----LGVRQLIVAVNKMDSVKW 160 (458)
T ss_dssp EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH----TTCCEEEEEEECGGGGTT
T ss_pred ceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH----cCCCeEEEEEEccccccC
Confidence 99999999999999999999999999999999998642 221 22233332222 245 49999999999742
Q ss_pred CC--HHHHHhhh----CccccCCccEEEEEeeccCCCCHHH
Q 030233 134 MP--TAEVADKL----ELYSLGQRRWSIQSCSAISGQGLYE 168 (181)
Q Consensus 134 ~~--~~~~~~~~----~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (181)
.. .+++...+ ....+....++++++||++|.|+.+
T Consensus 161 ~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~ 201 (458)
T 1f60_A 161 DESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE 201 (458)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred CHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCccc
Confidence 11 11222211 1111111246899999999999874
No 168
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.86 E-value=4e-23 Score=157.71 Aligned_cols=156 Identities=15% Similarity=0.177 Sum_probs=91.7
Q ss_pred hhCCCCccEEEEEcCCCCChHHHHHhhhcCC--cc--------------------------------cccCccceeEEEE
Q 030233 11 RFFPQCRIKLLMVGLDASGKTTILYKMKLGE--IV--------------------------------TTTPTIGFNVEAV 56 (181)
Q Consensus 11 ~~~~~~~~~i~~~G~~~~GKssl~~~~~~~~--~~--------------------------------~~~~~~~~~~~~~ 56 (181)
.+..+..++|+++|++++|||||+++|+... +. ....|++.....+
T Consensus 37 ~~~~k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~ 116 (467)
T 1r5b_A 37 DMYGKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYF 116 (467)
T ss_dssp HHSCCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEE
T ss_pred hhcCCCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEE
Confidence 3345667899999999999999999997421 11 1233444444556
Q ss_pred EECCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCCc---ccHH---HHHHHHHHHHcCCCCCCCe-EEEEEeCCC
Q 030233 57 EYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDR---ERIS---EARNELHQILSDNELSNAA-LLVFANKQD 129 (181)
Q Consensus 57 ~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~---~s~~---~~~~~~~~~~~~~~~~~~p-iilv~nK~D 129 (181)
...+..+.+|||||+++|...+...+..+|++|+|+|+++. .+|+ ...+.+..... .++| +++++||+|
T Consensus 117 ~~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~----~~vp~iivviNK~D 192 (467)
T 1r5b_A 117 ETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART----QGINHLVVVINKMD 192 (467)
T ss_dssp ECSSEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH----TTCSSEEEEEECTT
T ss_pred ecCCeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHH----cCCCEEEEEEECcc
Confidence 66788999999999999999988899999999999999875 2222 12222222211 3566 999999999
Q ss_pred CCCCC-CHH---H----HHhhhCcc-ccC-CccEEEEEeeccCCCCHHHHH
Q 030233 130 LPNVM-PTA---E----VADKLELY-SLG-QRRWSIQSCSAISGQGLYEGL 170 (181)
Q Consensus 130 ~~~~~-~~~---~----~~~~~~~~-~~~-~~~~~~~~~Sa~~~~~i~~l~ 170 (181)
+.... +.+ . +...+... .+. ..+++++++||++|.|+++++
T Consensus 193 l~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 193 EPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp STTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred CCCccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 96421 111 1 22222111 111 126789999999999998754
No 169
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.86 E-value=2.9e-21 Score=157.62 Aligned_cols=160 Identities=18% Similarity=0.160 Sum_probs=108.1
Q ss_pred CCCccEEEEEcCCCCChHHHHHhhhcCC-------ccc--------ccCccce----eEEEEEECCeEEEEEEcCCChhh
Q 030233 14 PQCRIKLLMVGLDASGKTTILYKMKLGE-------IVT--------TTPTIGF----NVEAVEYKNKSFCVWDVGGQNKI 74 (181)
Q Consensus 14 ~~~~~~i~~~G~~~~GKssl~~~~~~~~-------~~~--------~~~~~~~----~~~~~~~~~~~~~i~d~~g~~~~ 74 (181)
.+..++|+++|++++|||||++++.+.. +.. ...+.|+ ....+......+.+|||||+++|
T Consensus 293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF 372 (1289)
T 3avx_A 293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADY 372 (1289)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHH
T ss_pred cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHH
Confidence 3456899999999999999999998631 000 0112232 22334456789999999999999
Q ss_pred HHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCe-EEEEEeCCCCCCCCCH-----HHHHhhhCcccc
Q 030233 75 RALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAA-LLVFANKQDLPNVMPT-----AEVADKLELYSL 148 (181)
Q Consensus 75 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~D~~~~~~~-----~~~~~~~~~~~~ 148 (181)
.......+..+|++|+|+|+++.... ...+++..+.. .++| +|+++||+|+.+.... +++.+.+....+
T Consensus 373 ~~~mi~gas~AD~aILVVDAtdGv~~-QTrEhL~ll~~----lgIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~ 447 (1289)
T 3avx_A 373 VKNMITGAAQMDGAILVVAATDGPMP-QTREHILLGRQ----VGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDF 447 (1289)
T ss_dssp HHHHHHTSCCCSEEEEEEETTTCSCT-THHHHHHHHHH----HTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhhCCEEEEEEcCCccCcH-HHHHHHHHHHH----cCCCeEEEEEeecccccchhhHHHHHHHHHHHHHhccc
Confidence 99999999999999999999875322 23344433322 2577 8999999999752211 122222221111
Q ss_pred CCccEEEEEeeccCC--------CCHHHHHHHHHhhhh
Q 030233 149 GQRRWSIQSCSAISG--------QGLYEGLDWLSNNIS 178 (181)
Q Consensus 149 ~~~~~~~~~~Sa~~~--------~~i~~l~~~i~~~~~ 178 (181)
....++++++||++| +|++++++.|.+.+.
T Consensus 448 ~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip 485 (1289)
T 3avx_A 448 PGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIP 485 (1289)
T ss_dssp CTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred cccceeEEEEEeccCCCCCccccccchhhHhHHhhhcC
Confidence 223568999999999 469999999988664
No 170
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.85 E-value=1.1e-20 Score=130.14 Aligned_cols=159 Identities=19% Similarity=0.186 Sum_probs=98.5
Q ss_pred hCCCCccEEEEEcCCCCChHHHHHhhhcCC-cccccCccceeEE--EEEECCeEEEEEEcCCCh----------hhHHHH
Q 030233 12 FFPQCRIKLLMVGLDASGKTTILYKMKLGE-IVTTTPTIGFNVE--AVEYKNKSFCVWDVGGQN----------KIRALW 78 (181)
Q Consensus 12 ~~~~~~~~i~~~G~~~~GKssl~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~i~d~~g~~----------~~~~~~ 78 (181)
+......+|+++|++|+|||||++++++.. .....++.|.+.. .+.+.+ .+.+|||||.. .+....
T Consensus 21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 99 (210)
T 1pui_A 21 LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD-GKRLVDLPGYGYAEVPEEMKRKWQRAL 99 (210)
T ss_dssp SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET-TEEEEECCCCC------CCHHHHHHHH
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC-CEEEEECcCCcccccCHHHHHHHHHHH
Confidence 344567899999999999999999999877 3334555554432 233333 67899999973 233333
Q ss_pred Hhhc---cCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH----HHHHhhhCccccCCc
Q 030233 79 RHYF---RDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPT----AEVADKLELYSLGQR 151 (181)
Q Consensus 79 ~~~~---~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~----~~~~~~~~~~~~~~~ 151 (181)
..++ ..++++++++|+.++.+.... .+...+.. .+.|+++++||+|+.+.... ..+...... -..
T Consensus 100 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~--~~~~~~~~---~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~---~~~ 171 (210)
T 1pui_A 100 GEYLEKRQSLQGLVVLMDIRHPLKDLDQ--QMIEWAVD---SNIAVLVLLTKADKLASGARKAQLNMVREAVLA---FNG 171 (210)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHH--HHHHHHHH---TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGG---GCS
T ss_pred HHHHHhhhcccEEEEEEECCCCCchhHH--HHHHHHHH---cCCCeEEEEecccCCCchhHHHHHHHHHHHHHh---cCC
Confidence 3344 468999999999876554321 12222222 46899999999998753211 112221111 112
Q ss_pred cEEEEEeeccCCCCHHHHHHHHHhhhhc
Q 030233 152 RWSIQSCSAISGQGLYEGLDWLSNNISV 179 (181)
Q Consensus 152 ~~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 179 (181)
.+.++++||+++.|++++++.|.+.+.+
T Consensus 172 ~~~~~~~Sal~~~~~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 172 DVQVETFSSLKKQGVDKLRQKLDTWFSE 199 (210)
T ss_dssp CEEEEECBTTTTBSHHHHHHHHHHHHC-
T ss_pred CCceEEEeecCCCCHHHHHHHHHHHHhh
Confidence 4678999999999999999999887643
No 171
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.85 E-value=1.1e-19 Score=140.25 Aligned_cols=114 Identities=19% Similarity=0.141 Sum_probs=83.4
Q ss_pred CccEEEEEcCCCCChHHHHHhhhcCC--cc-----------------------cccCccceeEEEEEECCeEEEEEEcCC
Q 030233 16 CRIKLLMVGLDASGKTTILYKMKLGE--IV-----------------------TTTPTIGFNVEAVEYKNKSFCVWDVGG 70 (181)
Q Consensus 16 ~~~~i~~~G~~~~GKssl~~~~~~~~--~~-----------------------~~~~~~~~~~~~~~~~~~~~~i~d~~g 70 (181)
+..+|+++|++++|||||+++++... .. ....|.......+.+.+..+.+|||||
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG 91 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPG 91 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCC
T ss_pred CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCC
Confidence 46899999999999999999998632 10 001122233445667889999999999
Q ss_pred ChhhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC
Q 030233 71 QNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVM 134 (181)
Q Consensus 71 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~ 134 (181)
+.+|......+++.+|++|+|+|+++...- .....+.. ... .++|+++++||+|+....
T Consensus 92 ~~df~~~~~~~l~~aD~~IlVvDa~~g~~~-~t~~~~~~-~~~---~~ipiivviNK~Dl~~~~ 150 (529)
T 2h5e_A 92 HEDFSEDTYRTLTAVDCCLMVIDAAKGVED-RTRKLMEV-TRL---RDTPILTFMNKLDRDIRD 150 (529)
T ss_dssp STTCCHHHHHGGGGCSEEEEEEETTTCSCH-HHHHHHHH-HTT---TTCCEEEEEECTTSCCSC
T ss_pred ChhHHHHHHHHHHHCCEEEEEEeCCccchH-HHHHHHHH-HHH---cCCCEEEEEcCcCCcccc
Confidence 999998888899999999999999875332 22233333 232 478999999999997643
No 172
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.85 E-value=4.3e-20 Score=146.77 Aligned_cols=114 Identities=20% Similarity=0.109 Sum_probs=87.1
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhcC--Ccc-------------------cccCccceeEEEEEECCeEEEEEEcCCChh
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKLG--EIV-------------------TTTPTIGFNVEAVEYKNKSFCVWDVGGQNK 73 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~~--~~~-------------------~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~ 73 (181)
.+..+|+++|++++|||||+++++.. .+. ....|.......+.+.+..+.+|||||+.+
T Consensus 10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 89 (691)
T 1dar_A 10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVD 89 (691)
T ss_dssp GGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTT
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccc
Confidence 45678999999999999999999831 110 223455555666777899999999999999
Q ss_pred hHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 030233 74 IRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV 133 (181)
Q Consensus 74 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~ 133 (181)
+...+..+++.+|++|+|+|+++..+.+....|. .+.. .++|+++++||+|+...
T Consensus 90 f~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~-~~~~----~~~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 90 FTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWR-QAEK----YKVPRIAFANKMDKTGA 144 (691)
T ss_dssp CHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHH-HHHH----TTCCEEEEEECTTSTTC
T ss_pred hHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHH-HHHH----cCCCEEEEEECCCcccC
Confidence 9999999999999999999999877766654443 3333 37899999999998764
No 173
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.84 E-value=5.6e-22 Score=146.86 Aligned_cols=157 Identities=13% Similarity=0.218 Sum_probs=81.0
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhcCCc-cc-c--------cCccceeEEEEEE--CC--eEEEEEEcCCC-------hh
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKLGEI-VT-T--------TPTIGFNVEAVEY--KN--KSFCVWDVGGQ-------NK 73 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~-~~-~--------~~~~~~~~~~~~~--~~--~~~~i~d~~g~-------~~ 73 (181)
...++|+++|++|+|||||++++++... .. . .+|.+.....+.. .+ ..+.+|||||. +.
T Consensus 35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~ 114 (361)
T 2qag_A 35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 114 (361)
T ss_dssp CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence 3468999999999999999999876542 21 1 1344433333222 22 47999999998 44
Q ss_pred hHHHHH-------hhccCC-------------CEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 030233 74 IRALWR-------HYFRDT-------------LGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV 133 (181)
Q Consensus 74 ~~~~~~-------~~~~~~-------------d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~ 133 (181)
+..++. .+++.+ |+++|+++.. ..++......+...+. .++|+|+|+||+|+...
T Consensus 115 ~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~-~~~l~~~d~~~~~~l~----~~~piIlV~NK~Dl~~~ 189 (361)
T 2qag_A 115 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDVAFMKAIH----NKVNIVPVIAKADTLTL 189 (361)
T ss_dssp -CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS-SSSCCHHHHHHHHHTC----S-SCEEEEEECCSSSCH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC-CCCcchhHHHHHHHhc----cCCCEEEEEECCCCCCH
Confidence 444433 444332 3455555542 4556565543433332 47899999999998763
Q ss_pred CCHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHHHHHHhhhh
Q 030233 134 MPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNIS 178 (181)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~ 178 (181)
.....+.... ...+...+++++++||++|.+ ++.|.++.+.+.
T Consensus 190 ~ev~~~k~~i-~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~ 232 (361)
T 2qag_A 190 KERERLKKRI-LDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLK 232 (361)
T ss_dssp HHHHHHHHHH-HHHTTCC-CCSCCCC----------CHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHH
Confidence 2222211111 112234567899999999998 777777776654
No 174
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.84 E-value=1.4e-22 Score=158.40 Aligned_cols=160 Identities=23% Similarity=0.207 Sum_probs=89.3
Q ss_pred CCCccEEEEEcCCCCChHHHHHhhhcCC--cc--------------------------------cccCccceeEEEEEEC
Q 030233 14 PQCRIKLLMVGLDASGKTTILYKMKLGE--IV--------------------------------TTTPTIGFNVEAVEYK 59 (181)
Q Consensus 14 ~~~~~~i~~~G~~~~GKssl~~~~~~~~--~~--------------------------------~~~~~~~~~~~~~~~~ 59 (181)
.+..++|+++|++++|||||+++|++.. .. ....|.......+...
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~ 253 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD 253 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC
Confidence 3456799999999999999999996421 00 0112333333345556
Q ss_pred CeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCCcc---cH---HHHHHHHHHHHcCCCCCCCe-EEEEEeCCCCCC
Q 030233 60 NKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRE---RI---SEARNELHQILSDNELSNAA-LLVFANKQDLPN 132 (181)
Q Consensus 60 ~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~---~~~~~~~~~~~~~~~~~~~p-iilv~nK~D~~~ 132 (181)
+..+.+|||||+++|.......+..+|++|+|+|+++.. ++ ......+..+.. .++| +|+|+||+|+.+
T Consensus 254 ~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~----lgip~iIvviNKiDl~~ 329 (592)
T 3mca_A 254 KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA----LGISEIVVSVNKLDLMS 329 (592)
T ss_dssp -----CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH----SSCCCEEEEEECGGGGT
T ss_pred CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH----cCCCeEEEEEecccccc
Confidence 788999999999998888888888999999999997532 11 112222222222 2454 999999999875
Q ss_pred CC--CHH----HHHhhh-CccccCCccEEEEEeeccCCCCHH--------------HHHHHHHhhh
Q 030233 133 VM--PTA----EVADKL-ELYSLGQRRWSIQSCSAISGQGLY--------------EGLDWLSNNI 177 (181)
Q Consensus 133 ~~--~~~----~~~~~~-~~~~~~~~~~~~~~~Sa~~~~~i~--------------~l~~~i~~~~ 177 (181)
.. ..+ ++...+ ....+....++++++||++|.|+. +|++.|...+
T Consensus 330 ~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~ 395 (592)
T 3mca_A 330 WSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLV 395 (592)
T ss_dssp TCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSC
T ss_pred ccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhhc
Confidence 21 112 222222 222223346789999999999998 7888887654
No 175
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.83 E-value=1.2e-20 Score=139.35 Aligned_cols=133 Identities=28% Similarity=0.353 Sum_probs=100.5
Q ss_pred CccceeEEEEEECCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCC----------cccHHHHHHHHHHHHcCCCC
Q 030233 47 PTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSD----------RERISEARNELHQILSDNEL 116 (181)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~~~~~~~~ 116 (181)
+|.|+....+.+.+..+.+|||+|++.++..|..++++++++|+|+|+++ ..++.+...|+..+......
T Consensus 187 ~T~Gi~~~~~~~~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~ 266 (362)
T 1zcb_A 187 PTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVF 266 (362)
T ss_dssp CCSSEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGG
T ss_pred CccceEEEEeeeCCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhh
Confidence 35677777788899999999999999999999999999999999999998 77999999999999887666
Q ss_pred CCCeEEEEEeCCCCCC------------------CCCHHHHHhhh-----CccccC-CccEEEEEeeccCCCCHHHHHHH
Q 030233 117 SNAALLVFANKQDLPN------------------VMPTAEVADKL-----ELYSLG-QRRWSIQSCSAISGQGLYEGLDW 172 (181)
Q Consensus 117 ~~~piilv~nK~D~~~------------------~~~~~~~~~~~-----~~~~~~-~~~~~~~~~Sa~~~~~i~~l~~~ 172 (181)
.+.|+|+++||+|+.. ..+.++..... .+.... ...+.+++|||++|+||+++|++
T Consensus 267 ~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~ 346 (362)
T 1zcb_A 267 SNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRD 346 (362)
T ss_dssp TTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHH
T ss_pred CCCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHH
Confidence 7899999999999852 13344443322 111111 34678999999999999999999
Q ss_pred HHhhhhc
Q 030233 173 LSNNISV 179 (181)
Q Consensus 173 i~~~~~~ 179 (181)
+.+.+.+
T Consensus 347 v~~~i~~ 353 (362)
T 1zcb_A 347 VKDTILH 353 (362)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988764
No 176
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.83 E-value=2.4e-19 Score=142.05 Aligned_cols=112 Identities=14% Similarity=0.115 Sum_probs=84.4
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhcCCcc---------------------cccCccceeEEEEEECCeEEEEEEcCCChh
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKLGEIV---------------------TTTPTIGFNVEAVEYKNKSFCVWDVGGQNK 73 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~ 73 (181)
.+..+|+++|++|+|||||++++++.... ....+.......+......+.+|||||+++
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~ 86 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGD 86 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGG
T ss_pred CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccc
Confidence 45678999999999999999999843211 012233344445666889999999999999
Q ss_pred hHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCC
Q 030233 74 IRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLP 131 (181)
Q Consensus 74 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~ 131 (181)
+...+..+++.+|++++|+|+.+..... ...++..+.. .++|+++++||+|+.
T Consensus 87 f~~~~~~~l~~ad~~ilVvD~~~g~~~q-t~~~~~~~~~----~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 87 FVGEIRGALEAADAALVAVSAEAGVQVG-TERAWTVAER----LGLPRMVVVTKLDKG 139 (665)
T ss_dssp GHHHHHHHHHHCSEEEEEEETTTCSCHH-HHHHHHHHHH----TTCCEEEEEECGGGC
T ss_pred hHHHHHHHHhhcCcEEEEEcCCcccchh-HHHHHHHHHH----ccCCEEEEecCCchh
Confidence 9999999999999999999987653332 2344444433 378999999999987
No 177
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.83 E-value=2.3e-20 Score=148.43 Aligned_cols=159 Identities=20% Similarity=0.213 Sum_probs=105.5
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhcCCcccccCccce--------------eEE--------------------------
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGF--------------NVE-------------------------- 54 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~--------------~~~-------------------------- 54 (181)
...++|+++|.+|+|||||+|++++.......+.+++ +..
T Consensus 67 ~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~ 146 (695)
T 2j69_A 67 QGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEA 146 (695)
T ss_dssp HCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHH
Confidence 4578999999999999999999998774332221111 110
Q ss_pred -----------------EEEECC----eEEEEEEcCCChh---hHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHH
Q 030233 55 -----------------AVEYKN----KSFCVWDVGGQNK---IRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQI 110 (181)
Q Consensus 55 -----------------~~~~~~----~~~~i~d~~g~~~---~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~ 110 (181)
.+.+.. ..+.+|||||... ....+..+++.+|++++|+|++++.+......+...
T Consensus 147 ~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~- 225 (695)
T 2j69_A 147 KKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENY- 225 (695)
T ss_dssp HHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHH-
T ss_pred HHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHH-
Confidence 000100 3689999999654 345566788899999999999887776665444333
Q ss_pred HcCCCCCCCeEEEEEeCCCCCCCC-----CHHH-------HHh----hhCccccC-----CccEEEEEeecc--------
Q 030233 111 LSDNELSNAALLVFANKQDLPNVM-----PTAE-------VAD----KLELYSLG-----QRRWSIQSCSAI-------- 161 (181)
Q Consensus 111 ~~~~~~~~~piilv~nK~D~~~~~-----~~~~-------~~~----~~~~~~~~-----~~~~~~~~~Sa~-------- 161 (181)
+.. .+.|+++|+||+|+.... ..+. +.. .+.. ... ....+++++||+
T Consensus 226 l~~---~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~-~~~~~g~~~~~~~v~~vSAk~al~~~~~ 301 (695)
T 2j69_A 226 IKG---RGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAE-YCTVEGQNIYDERVFELSSIQALRRRLK 301 (695)
T ss_dssp TTT---SCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGG-GGBSSSCBCGGGTEEECCHHHHHHHHHH
T ss_pred HHh---hCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHH-hhcccccccCCCcEEEEeChHHHHhhcc
Confidence 232 367899999999986432 1111 211 1110 001 123468999999
Q ss_pred ------CCCCHHHHHHHHHhhhh
Q 030233 162 ------SGQGLYEGLDWLSNNIS 178 (181)
Q Consensus 162 ------~~~~i~~l~~~i~~~~~ 178 (181)
+|.|++++++.+.+.+.
T Consensus 302 ~~~~~~~~~Gi~~L~~~L~~~l~ 324 (695)
T 2j69_A 302 NPQADLDGTGFPKFMDSLNTFLT 324 (695)
T ss_dssp CTTCCCTTSSHHHHHHHHHHHHH
T ss_pred CchhhhhccCHHHHHHHHHHHHH
Confidence 99999999999988764
No 178
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.83 E-value=8.2e-20 Score=133.18 Aligned_cols=161 Identities=15% Similarity=0.116 Sum_probs=98.7
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhcCCc-ccc----cCcc---ceeEE--------------------------------
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKLGEI-VTT----TPTI---GFNVE-------------------------------- 54 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~-~~~----~~~~---~~~~~-------------------------------- 54 (181)
...++|+++|.+|+|||||+|++++..+ +.. ...+ .....
T Consensus 22 ~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (315)
T 1jwy_B 22 LDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREE 101 (315)
T ss_dssp TCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHH
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHH
Confidence 3467999999999999999999999875 211 1111 00000
Q ss_pred --------------------E---EEECCeEEEEEEcCCChh-------------hHHHHHhhccCCCEEEEEEECCCcc
Q 030233 55 --------------------A---VEYKNKSFCVWDVGGQNK-------------IRALWRHYFRDTLGLTFVVDSSDRE 98 (181)
Q Consensus 55 --------------------~---~~~~~~~~~i~d~~g~~~-------------~~~~~~~~~~~~d~ii~v~d~~~~~ 98 (181)
. .......+.+|||||... +......++..+|++++|+|.++..
T Consensus 102 i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~ 181 (315)
T 1jwy_B 102 IIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTD 181 (315)
T ss_dssp HHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSC
T ss_pred HHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcc
Confidence 0 111346799999999643 5566778889999999999975332
Q ss_pred cHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC-HHHHHhhhCccccCCccEEEEEeeccC---CCCHHHHHHHHH
Q 030233 99 RISEARNELHQILSDNELSNAALLVFANKQDLPNVMP-TAEVADKLELYSLGQRRWSIQSCSAIS---GQGLYEGLDWLS 174 (181)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~~i~~l~~~i~ 174 (181)
........+...+.. .+.|+++|+||+|+..... ..+.... ..........++..+|+.+ +.|+.++++.+.
T Consensus 182 ~~~~~~~~i~~~~~~---~~~~~i~v~NK~Dl~~~~~~~~~~~~~-~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~ 257 (315)
T 1jwy_B 182 LANSDALQLAKEVDP---EGKRTIGVITKLDLMDKGTDAMEVLTG-RVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEI 257 (315)
T ss_dssp STTCSHHHHHHHHCS---SCSSEEEEEECTTSSCSSCCCHHHHTT-SSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHH
T ss_pred hhhhHHHHHHHHhCC---CCCcEEEEEcCcccCCcchHHHHHHhC-CCccCCCCeEEEecCChhhhccCCCHHHHHHHHH
Confidence 111111122222333 4789999999999875433 1121111 0111112233455566666 899999999987
Q ss_pred hhhhc
Q 030233 175 NNISV 179 (181)
Q Consensus 175 ~~~~~ 179 (181)
+.+..
T Consensus 258 ~~~~~ 262 (315)
T 1jwy_B 258 LYFKN 262 (315)
T ss_dssp HHHHT
T ss_pred HHHhC
Confidence 76643
No 179
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.82 E-value=2.7e-19 Score=142.25 Aligned_cols=116 Identities=17% Similarity=0.123 Sum_probs=87.8
Q ss_pred CCCCccEEEEEcCCCCChHHHHHhhhc--CCcc-------------------cccCccceeEEEEEECCeEEEEEEcCCC
Q 030233 13 FPQCRIKLLMVGLDASGKTTILYKMKL--GEIV-------------------TTTPTIGFNVEAVEYKNKSFCVWDVGGQ 71 (181)
Q Consensus 13 ~~~~~~~i~~~G~~~~GKssl~~~~~~--~~~~-------------------~~~~~~~~~~~~~~~~~~~~~i~d~~g~ 71 (181)
.+.+..+|+++|++|+|||||+++++. +.+. ....|.......+.+.+..+.+|||||+
T Consensus 6 ~~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 85 (693)
T 2xex_A 6 SLEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGH 85 (693)
T ss_dssp CSTTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCC
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCC
Confidence 345678999999999999999999984 2111 1123444445556778899999999999
Q ss_pred hhhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 030233 72 NKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV 133 (181)
Q Consensus 72 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~ 133 (181)
.++...+..+++.+|++++|+|+++..+......| ..+.. .+.|+++|+||+|+...
T Consensus 86 ~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~-~~~~~----~~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 86 VDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVW-RQATT----YGVPRIVFVNKMDKLGA 142 (693)
T ss_dssp SSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHH-HHHHH----TTCCEEEEEECTTSTTC
T ss_pred cchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHH-HHHHH----cCCCEEEEEECCCcccc
Confidence 99999999999999999999999987666555443 33333 37899999999999764
No 180
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.82 E-value=6.6e-21 Score=141.85 Aligned_cols=132 Identities=24% Similarity=0.306 Sum_probs=104.4
Q ss_pred ccceeEEEEEECCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCC----------cccHHHHHHHHHHHHcCCCCC
Q 030233 48 TIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSD----------RERISEARNELHQILSDNELS 117 (181)
Q Consensus 48 ~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~ 117 (181)
|+|+....+.+.+..+.+|||+|++.++..|..++++++++|+|||+++ ..+|.+...|+..+.......
T Consensus 204 TiGi~~~~~~~~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~ 283 (402)
T 1azs_C 204 TSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLR 283 (402)
T ss_dssp CCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCS
T ss_pred eeeeEEEEeecCCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCC
Confidence 5677777778889999999999999999999999999999999999998 889999999999998876667
Q ss_pred CCeEEEEEeCCCCCCC-----C-C--------------------------HHHHHhhhCcc--c------cCCccEEEEE
Q 030233 118 NAALLVFANKQDLPNV-----M-P--------------------------TAEVADKLELY--S------LGQRRWSIQS 157 (181)
Q Consensus 118 ~~piilv~nK~D~~~~-----~-~--------------------------~~~~~~~~~~~--~------~~~~~~~~~~ 157 (181)
+.|+++|+||+|+... . . .++........ . .....+.+++
T Consensus 284 ~~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~ 363 (402)
T 1azs_C 284 TISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHF 363 (402)
T ss_dssp SCCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEE
T ss_pred CCeEEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEE
Confidence 8999999999997421 0 0 11111110000 0 0123577899
Q ss_pred eeccCCCCHHHHHHHHHhhhhc
Q 030233 158 CSAISGQGLYEGLDWLSNNISV 179 (181)
Q Consensus 158 ~Sa~~~~~i~~l~~~i~~~~~~ 179 (181)
|||++++||+++|+++.+.+.+
T Consensus 364 TSA~d~~nV~~vF~~v~~~I~~ 385 (402)
T 1azs_C 364 TCAVDTENIRRVFNDCRDIIQR 385 (402)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHH
T ss_pred EEeecCcCHHHHHHHHHHHHHH
Confidence 9999999999999999887754
No 181
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.82 E-value=1.2e-18 Score=138.60 Aligned_cols=115 Identities=14% Similarity=0.027 Sum_probs=85.0
Q ss_pred CCCccEEEEEcCCCCChHHHHHhhhcCC--cc-------------------cccCccceeEEEEEECC-------eEEEE
Q 030233 14 PQCRIKLLMVGLDASGKTTILYKMKLGE--IV-------------------TTTPTIGFNVEAVEYKN-------KSFCV 65 (181)
Q Consensus 14 ~~~~~~i~~~G~~~~GKssl~~~~~~~~--~~-------------------~~~~~~~~~~~~~~~~~-------~~~~i 65 (181)
+.+..+|+++|+.++|||||+++++... +. ....|+......+.+.+ ..+.+
T Consensus 7 ~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~l 86 (704)
T 2rdo_7 7 IARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINI 86 (704)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEE
Confidence 3556799999999999999999997431 11 11223333334455555 89999
Q ss_pred EEcCCChhhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 030233 66 WDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV 133 (181)
Q Consensus 66 ~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~ 133 (181)
|||||+.+|...+...++.+|++|+|+|+++....+... .+..... .++|+++++||+|+...
T Consensus 87 iDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~-~~~~~~~----~~ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 87 IDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSET-VWRQANK----YKVPRIAFVNKMDRMGA 149 (704)
T ss_pred EeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHH-HHHHHHH----cCCCEEEEEeCCCcccc
Confidence 999999999999999999999999999998765444433 3333322 37899999999998653
No 182
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.82 E-value=6.9e-20 Score=130.38 Aligned_cols=116 Identities=12% Similarity=0.106 Sum_probs=79.8
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhcCCcccccC----ccceeEEEEEECCeEEEEEEcCCChhhHHHHHhh-------c-
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKLGEIVTTTP----TIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHY-------F- 82 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~-------~- 82 (181)
++.++|+++|.+|+|||||+|++++.......+ |.......+...+..+.+|||||++++......+ +
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~ 113 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFLV 113 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccchHHHHHHHHHHHh
Confidence 468999999999999999999999987433222 3334455566788999999999986653222111 1
Q ss_pred -cCCCEEEEEEECCCcccHHHH-HHHHHHHHcCCC-CCCCeEEEEEeCCCCC
Q 030233 83 -RDTLGLTFVVDSSDRERISEA-RNELHQILSDNE-LSNAALLVFANKQDLP 131 (181)
Q Consensus 83 -~~~d~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~-~~~~piilv~nK~D~~ 131 (181)
..+|++++|+|++... +... ..++..+..... ....|+++|+||+|+.
T Consensus 114 ~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~ 164 (262)
T 3def_A 114 NRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFS 164 (262)
T ss_dssp TCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCC
T ss_pred cCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccC
Confidence 2689999999987644 4333 344444433211 1124899999999985
No 183
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.80 E-value=1.8e-20 Score=137.96 Aligned_cols=121 Identities=18% Similarity=0.345 Sum_probs=93.0
Q ss_pred CCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECC----------CcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCC
Q 030233 59 KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSS----------DRERISEARNELHQILSDNELSNAALLVFANKQ 128 (181)
Q Consensus 59 ~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~ 128 (181)
....+.+|||+|++.++..|..++++++++|+|+|++ +..++.+...|+..+.......+.|+++|+||+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 3578999999999999999999999999999999998 788999999999999887656789999999999
Q ss_pred CCCCC----CC-------------------HHHHHhhhCccc-----------cCCccEEEEEeeccCCCCHHHHHHHHH
Q 030233 129 DLPNV----MP-------------------TAEVADKLELYS-----------LGQRRWSIQSCSAISGQGLYEGLDWLS 174 (181)
Q Consensus 129 D~~~~----~~-------------------~~~~~~~~~~~~-----------~~~~~~~~~~~Sa~~~~~i~~l~~~i~ 174 (181)
|+..+ .+ .++......... .....+.+++|||++++||+++|+++.
T Consensus 261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~ 340 (354)
T 2xtz_A 261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD 340 (354)
T ss_dssp HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence 97421 00 111111111100 002346689999999999999999999
Q ss_pred hhhhc
Q 030233 175 NNISV 179 (181)
Q Consensus 175 ~~~~~ 179 (181)
+.+.+
T Consensus 341 ~~I~~ 345 (354)
T 2xtz_A 341 ETLRR 345 (354)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87764
No 184
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.80 E-value=6.2e-19 Score=132.17 Aligned_cols=156 Identities=22% Similarity=0.230 Sum_probs=104.7
Q ss_pred EEEEEcCCCCChHHHHHhhhcCCcc--cc-cCccceeEEEEEECC-eEEEEEEcCCChhh-------HHHHHhhccCCCE
Q 030233 19 KLLMVGLDASGKTTILYKMKLGEIV--TT-TPTIGFNVEAVEYKN-KSFCVWDVGGQNKI-------RALWRHYFRDTLG 87 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~~~~~--~~-~~~~~~~~~~~~~~~-~~~~i~d~~g~~~~-------~~~~~~~~~~~d~ 87 (181)
.++++|++|+|||||++++++.... .+ ..|...+...+.+.+ ..+.+||+||.... ..........++.
T Consensus 159 ~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~~ 238 (416)
T 1udx_A 159 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTRV 238 (416)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSE
T ss_pred EEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHHHHHHHHHHh
Confidence 5899999999999999999887421 11 122333344455554 78999999996321 1112233457999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHcCC-CCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCCCH
Q 030233 88 LTFVVDSSDRERISEARNELHQILSDN-ELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGL 166 (181)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 166 (181)
+++++|++ ...+..+..+...+.... .....|.++++||+|+......+.+.+.. ...+.+++.+||++++|+
T Consensus 239 lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~~~~~~l~~~l-----~~~g~~vi~iSA~~g~gi 312 (416)
T 1udx_A 239 LLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADAL-----AREGLAVLPVSALTGAGL 312 (416)
T ss_dssp EEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHHHHHH-----HTTTSCEEECCTTTCTTH
T ss_pred hhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhHHHHHHHHHHH-----HhcCCeEEEEECCCccCH
Confidence 99999998 556666665555443321 11357899999999987631112222222 223457999999999999
Q ss_pred HHHHHHHHhhhhcc
Q 030233 167 YEGLDWLSNNISVK 180 (181)
Q Consensus 167 ~~l~~~i~~~~~~~ 180 (181)
++++++|.+.+.+.
T Consensus 313 ~eL~~~i~~~l~~~ 326 (416)
T 1udx_A 313 PALKEALHALVRST 326 (416)
T ss_dssp HHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999887653
No 185
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.78 E-value=1.1e-18 Score=124.67 Aligned_cols=117 Identities=11% Similarity=0.083 Sum_probs=78.6
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhcCCcccccCccc----eeEEEEEECCeEEEEEEcCCChhhH-------HHHHhh--
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIG----FNVEAVEYKNKSFCVWDVGGQNKIR-------ALWRHY-- 81 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~i~d~~g~~~~~-------~~~~~~-- 81 (181)
...++|+++|.+|+|||||+|++++..+....++.+ .....+...+..+.+|||||..++. .....+
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~ 116 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLL 116 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhh
Confidence 357999999999999999999999887543333333 2233455678899999999976543 122222
Q ss_pred ccCCCEEEEEEECCCcccHHHH-HHHHHHHHcCCC-CCCCeEEEEEeCCCCCC
Q 030233 82 FRDTLGLTFVVDSSDRERISEA-RNELHQILSDNE-LSNAALLVFANKQDLPN 132 (181)
Q Consensus 82 ~~~~d~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~-~~~~piilv~nK~D~~~ 132 (181)
...+|++++|+|++.. ++... ..++..+..... ....|+++|+||+|+..
T Consensus 117 ~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~ 168 (270)
T 1h65_A 117 DKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSP 168 (270)
T ss_dssp TCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCC
T ss_pred cCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCC
Confidence 2468999999998653 34333 244444432211 01269999999999865
No 186
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.78 E-value=1.8e-19 Score=133.62 Aligned_cols=149 Identities=12% Similarity=0.184 Sum_probs=94.6
Q ss_pred ccEEEEEcCCCCChHHHHHhhhcCCcccccC-cc----------------------------------------------
Q 030233 17 RIKLLMVGLDASGKTTILYKMKLGEIVTTTP-TI---------------------------------------------- 49 (181)
Q Consensus 17 ~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~-~~---------------------------------------------- 49 (181)
-.+|+++|++|+|||||+|++++..+..... +.
T Consensus 34 lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (360)
T 3t34_A 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDR 113 (360)
T ss_dssp CCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHHH
Confidence 3489999999999999999999977522111 00
Q ss_pred ------ceeEE--EEE---ECCeEEEEEEcCCChhh-------------HHHHHhhccCCCEEEEEEECCCcccHHHHHH
Q 030233 50 ------GFNVE--AVE---YKNKSFCVWDVGGQNKI-------------RALWRHYFRDTLGLTFVVDSSDRERISEARN 105 (181)
Q Consensus 50 ------~~~~~--~~~---~~~~~~~i~d~~g~~~~-------------~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~ 105 (181)
++... .+. .....+.+|||||...+ ......+++.+|++++|+|..+.+.... .
T Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~--~ 191 (360)
T 3t34_A 114 ETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATS--D 191 (360)
T ss_dssp TSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGC--H
T ss_pred hcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCH--H
Confidence 00000 111 12456899999997664 6677888999999999998765443322 1
Q ss_pred HHHHHHcCCCCCCCeEEEEEeCCCCCCCCC-HHHHHhhhCccccCCccEEEEEeeccCCCCHHHHHHH
Q 030233 106 ELHQILSDNELSNAALLVFANKQDLPNVMP-TAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDW 172 (181)
Q Consensus 106 ~~~~~~~~~~~~~~piilv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 172 (181)
++..+ ......+.|+++|+||+|+..... ..+...... ...+.+|+++|+.++.++++.+..
T Consensus 192 ~~~l~-~~~~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~v~~~s~~~i~~~~~~ 254 (360)
T 3t34_A 192 AIKIS-REVDPSGDRTFGVLTKIDLMDKGTDAVEILEGRS----FKLKYPWVGVVNRSQADINKNVDM 254 (360)
T ss_dssp HHHHH-HHSCTTCTTEEEEEECGGGCCTTCCSHHHHTTSS----SCCSSCCEEECCCCHHHHHTTCCH
T ss_pred HHHHH-HHhcccCCCEEEEEeCCccCCCcccHHHHHcCcc----ccccCCeEEEEECChHHhccCCCH
Confidence 22111 212224789999999999875322 222222211 223457999999998888776544
No 187
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.77 E-value=4.5e-19 Score=131.15 Aligned_cols=155 Identities=15% Similarity=0.141 Sum_probs=94.7
Q ss_pred CccEEEEEcCCCCChHHHHHhhhcCCcc-cc------cCc----------------------------------------
Q 030233 16 CRIKLLMVGLDASGKTTILYKMKLGEIV-TT------TPT---------------------------------------- 48 (181)
Q Consensus 16 ~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~------~~~---------------------------------------- 48 (181)
..++|+++|.+++|||||+|++++..+. .. .|+
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~ 109 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 109 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhc
Confidence 4579999999999999999999998753 11 121
Q ss_pred ---cceeE----EEEEE-CCeEEEEEEcCCCh-------------hhHHHHHhhccCCCE-EEEEEECCCcccHHHHHHH
Q 030233 49 ---IGFNV----EAVEY-KNKSFCVWDVGGQN-------------KIRALWRHYFRDTLG-LTFVVDSSDRERISEARNE 106 (181)
Q Consensus 49 ---~~~~~----~~~~~-~~~~~~i~d~~g~~-------------~~~~~~~~~~~~~d~-ii~v~d~~~~~s~~~~~~~ 106 (181)
.++.. ..+.. ....+.+|||||.. .+......++..++. +++|+|++....-.....+
T Consensus 110 g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i 189 (353)
T 2x2e_A 110 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKV 189 (353)
T ss_dssp TTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHH
T ss_pred ccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHH
Confidence 00000 01111 24679999999942 455667677766654 4556666532111111122
Q ss_pred HHHHHcCCCCCCCeEEEEEeCCCCCCCCC-HHHHHhhhCccccCCccEEEEEeeccCCCCHHHHHHHHHh
Q 030233 107 LHQILSDNELSNAALLVFANKQDLPNVMP-TAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSN 175 (181)
Q Consensus 107 ~~~~~~~~~~~~~piilv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~ 175 (181)
+..+ .. .+.|+++|+||+|+.+... ........ ..........++++||++|.|++++++.+.+
T Consensus 190 ~~~~-~~---~~~~~i~V~NK~Dl~~~~~~~~~~~~~~-~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 190 AKEV-DP---QGQRTIGVITKLDLMDEGTDARDVLENK-LLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp HHHH-CT---TCTTEEEEEECGGGSCTTCCCHHHHTTC-SSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred HHHh-Cc---CCCceEEEeccccccCcchhHHHHHhCC-cccccCCceEEEeCCcccccccccHHHHHHH
Confidence 3322 22 4789999999999975432 22222211 1111122347899999999999999998875
No 188
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.76 E-value=2.8e-17 Score=127.51 Aligned_cols=110 Identities=15% Similarity=0.191 Sum_probs=83.1
Q ss_pred EEEEEcCCCCChHHHHHhhhcCC------------------cc-------cccCccceeEEEEEECCeEEEEEEcCCChh
Q 030233 19 KLLMVGLDASGKTTILYKMKLGE------------------IV-------TTTPTIGFNVEAVEYKNKSFCVWDVGGQNK 73 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~~~------------------~~-------~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~ 73 (181)
+|+++|+.++|||||..+++... .. ....|+......+.+.+..++++||||+.+
T Consensus 33 NiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGHvD 112 (548)
T 3vqt_A 33 TFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPGHQD 112 (548)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCCGGG
T ss_pred eEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCCcHH
Confidence 69999999999999999996211 00 113345555667888999999999999999
Q ss_pred hHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 030233 74 IRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV 133 (181)
Q Consensus 74 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~ 133 (181)
|.......++-+|++|+|+|+...-.-+. ...|....+ .++|.++++||+|....
T Consensus 113 F~~Ev~raL~~~DgAvlVvda~~GV~~qT-~~v~~~a~~----~~lp~i~fINK~Dr~~a 167 (548)
T 3vqt_A 113 FSEDTYRVLTAVDSALVVIDAAKGVEAQT-RKLMDVCRM----RATPVMTFVNKMDREAL 167 (548)
T ss_dssp CSHHHHHHHHSCSEEEEEEETTTBSCHHH-HHHHHHHHH----TTCCEEEEEECTTSCCC
T ss_pred HHHHHHHHHHhcCceEEEeecCCCccccc-HHHHHHHHH----hCCceEEEEecccchhc
Confidence 99999999999999999999985432222 333444444 37999999999998664
No 189
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.75 E-value=3.1e-19 Score=129.16 Aligned_cols=157 Identities=13% Similarity=0.185 Sum_probs=77.4
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhcC-Cccccc---------CccceeEEEEEE----CCeEEEEEEcCCC-------hh
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKLG-EIVTTT---------PTIGFNVEAVEY----KNKSFCVWDVGGQ-------NK 73 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~~-~~~~~~---------~~~~~~~~~~~~----~~~~~~i~d~~g~-------~~ 73 (181)
.-.++|+++|++|+|||||++++++. .++... ++.......+.. ....+.+||++|. +.
T Consensus 16 ~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~ 95 (301)
T 2qnr_A 16 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 95 (301)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------
T ss_pred CCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHH
Confidence 34689999999999999999998875 333221 222211111212 2468999999997 44
Q ss_pred hHHHHH-------hhccC-------------CCEEEEEEECCCcccHHHHHH-HHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 030233 74 IRALWR-------HYFRD-------------TLGLTFVVDSSDRERISEARN-ELHQILSDNELSNAALLVFANKQDLPN 132 (181)
Q Consensus 74 ~~~~~~-------~~~~~-------------~d~ii~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~D~~~ 132 (181)
+..... .+++. +++++|+.+.+. .+++.... .+..+ . .+.|+++|+||+|+..
T Consensus 96 ~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~~~~l~~l-~----~~~~iilV~~K~Dl~~ 169 (301)
T 2qnr_A 96 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDVAFMKAI-H----NKVNIVPVIAKADTLT 169 (301)
T ss_dssp CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHHHHHHHHH-T----TTSCEEEEECCGGGSC
T ss_pred HHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHHHHHHHHH-H----hcCCEEEEEEeCCCCC
Confidence 433332 33322 234566655432 23444332 22222 1 3579999999999875
Q ss_pred CCCHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHHHHHHhhhhc
Q 030233 133 VMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNISV 179 (181)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 179 (181)
........+.. ...+...+++++++||++| |++++|.++.+.+.+
T Consensus 170 ~~e~~~~~~~~-~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~ 214 (301)
T 2qnr_A 170 LKERERLKKRI-LDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKA 214 (301)
T ss_dssp HHHHHHHHHHH-HHHHHHTTCCCCCCC----------CHHHHHHHHT
T ss_pred HHHHHHHHHHH-HHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhc
Confidence 22111111111 1111234568999999999 999999999887754
No 190
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.74 E-value=1.9e-18 Score=127.93 Aligned_cols=152 Identities=15% Similarity=0.143 Sum_probs=94.3
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhcC------Cc--ccccCcc---------------------ceeEE-----------
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKLG------EI--VTTTPTI---------------------GFNVE----------- 54 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~~------~~--~~~~~~~---------------------~~~~~----------- 54 (181)
.+...|+++|.+|+|||||+++++.. .. ....+.. +....
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~~~~~~~~~~~ 156 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTLGGV 156 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------CHHHHTCTTEEEECCC--CCHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccCCCeeEEECCCCccccch
Confidence 45678999999999999999999632 10 0000000 00000
Q ss_pred ---------EEEECCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEE
Q 030233 55 ---------AVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFA 125 (181)
Q Consensus 55 ---------~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~ 125 (181)
.+...+..+.++||||.... .......+|++++|+|....+.+..+. ......|+++|+
T Consensus 157 ~~~t~d~i~~~~~~~~~~iiiDTpGi~~~---~~~~~~~aD~vl~V~d~~~~~~~~~l~---------~~~~~~p~ivVl 224 (355)
T 3p32_A 157 TRATRETVVLLEAAGFDVILIETVGVGQS---EVAVANMVDTFVLLTLARTGDQLQGIK---------KGVLELADIVVV 224 (355)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEECSCSSH---HHHHHTTCSEEEEEEESSTTCTTTTCC---------TTSGGGCSEEEE
T ss_pred hHHHHHHHHHHhhCCCCEEEEeCCCCCcH---HHHHHHhCCEEEEEECCCCCccHHHHH---------HhHhhcCCEEEE
Confidence 00124678999999995432 223457899999999987654432211 111346899999
Q ss_pred eCCCCCCCCCHHHHHhhhC----ccc--cCCccEEEEEeeccCCCCHHHHHHHHHhhhh
Q 030233 126 NKQDLPNVMPTAEVADKLE----LYS--LGQRRWSIQSCSAISGQGLYEGLDWLSNNIS 178 (181)
Q Consensus 126 nK~D~~~~~~~~~~~~~~~----~~~--~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~ 178 (181)
||+|+.+..........+. ... ...+..+++++||++|+|+++++++|.+.+.
T Consensus 225 NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~ 283 (355)
T 3p32_A 225 NKADGEHHKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQ 283 (355)
T ss_dssp ECCCGGGHHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHH
T ss_pred ECCCCcChhHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHH
Confidence 9999865322222222111 110 0122457999999999999999999988764
No 191
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.73 E-value=3.8e-19 Score=128.81 Aligned_cols=135 Identities=19% Similarity=0.124 Sum_probs=101.2
Q ss_pred HHHHhhhcCCcc--cccCccceeEEEEEE-CCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCCcc-cHHHHHHHH
Q 030233 32 TILYKMKLGEIV--TTTPTIGFNVEAVEY-KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRE-RISEARNEL 107 (181)
Q Consensus 32 sl~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~ 107 (181)
+|+.+++.+.+. .+.||+|.... +.. .+..+.+||+ ++++..++..+++++|++++|+|+++++ ++..+..|+
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l 108 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDETGSGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFL 108 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEE-EECCCSSSEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHH
T ss_pred cEEEEEEcccccccCCCCCCccEEE-EEEcCCCeEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHH
Confidence 688888888764 56789995544 333 2347999999 8889999999999999999999999987 788888888
Q ss_pred HHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHHHHHHhh
Q 030233 108 HQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNN 176 (181)
Q Consensus 108 ~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~ 176 (181)
..+.. .++|+++|+||+|+.+....++..+..... ... ++++++||++|+|++++|+.+...
T Consensus 109 ~~~~~----~~~piilv~NK~DL~~~~~v~~~~~~~~~~--~~~-~~~~~~SAktg~gv~~lf~~l~ge 170 (301)
T 1u0l_A 109 VLAEK----NELETVMVINKMDLYDEDDLRKVRELEEIY--SGL-YPIVKTSAKTGMGIEELKEYLKGK 170 (301)
T ss_dssp HHHHH----TTCEEEEEECCGGGCCHHHHHHHHHHHHHH--TTT-SCEEECCTTTCTTHHHHHHHHSSS
T ss_pred HHHHH----CCCCEEEEEeHHHcCCchhHHHHHHHHHHH--hhh-CcEEEEECCCCcCHHHHHHHhcCC
Confidence 76543 479999999999997532211122222111 111 579999999999999999987654
No 192
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.73 E-value=1.3e-19 Score=135.57 Aligned_cols=80 Identities=21% Similarity=0.240 Sum_probs=47.2
Q ss_pred cEEEEEcCCCCChHHHHHhhhcCCcc--c-----ccCccceeEEEE-----------------EEC---CeEEEEEEcCC
Q 030233 18 IKLLMVGLDASGKTTILYKMKLGEIV--T-----TTPTIGFNVEAV-----------------EYK---NKSFCVWDVGG 70 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~~~~~--~-----~~~~~~~~~~~~-----------------~~~---~~~~~i~d~~g 70 (181)
++|+++|.+|+|||||+|++++.... . ..++.+.....+ .+. ...+.+|||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 58999999999999999999987621 1 122233221110 111 25799999999
Q ss_pred Chh----hHHHHH---hhccCCCEEEEEEECCCc
Q 030233 71 QNK----IRALWR---HYFRDTLGLTFVVDSSDR 97 (181)
Q Consensus 71 ~~~----~~~~~~---~~~~~~d~ii~v~d~~~~ 97 (181)
... ...+.. ..++.+|++++|+|+.+.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 754 222333 346789999999999875
No 193
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.71 E-value=1.8e-17 Score=128.59 Aligned_cols=114 Identities=19% Similarity=0.209 Sum_probs=80.0
Q ss_pred CccEEEEEcCCCCChHHHHHhhhcCCcc--cccCccceeEE-EEEE----------------------------------
Q 030233 16 CRIKLLMVGLDASGKTTILYKMKLGEIV--TTTPTIGFNVE-AVEY---------------------------------- 58 (181)
Q Consensus 16 ~~~~i~~~G~~~~GKssl~~~~~~~~~~--~~~~~~~~~~~-~~~~---------------------------------- 58 (181)
..++|+++|.+|+|||||+|++++..+. ...+.+.++.. .+..
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~~ 143 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNRF 143 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTTE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccccc
Confidence 4579999999999999999999998753 11111111110 0000
Q ss_pred -----CC---eEEEEEEcCCChh-----------hHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCC
Q 030233 59 -----KN---KSFCVWDVGGQNK-----------IRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNA 119 (181)
Q Consensus 59 -----~~---~~~~i~d~~g~~~-----------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~ 119 (181)
.. ..+.+|||||... +...+..++..+|++++|+|+++.........++..+. . .+.
T Consensus 144 ~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~-~---~~~ 219 (550)
T 2qpt_A 144 MCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALR-G---HED 219 (550)
T ss_dssp EEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTT-T---CGG
T ss_pred eEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHH-h---cCC
Confidence 00 3689999999764 55677778889999999999987554555555555443 2 368
Q ss_pred eEEEEEeCCCCCCC
Q 030233 120 ALLVFANKQDLPNV 133 (181)
Q Consensus 120 piilv~nK~D~~~~ 133 (181)
|+++|+||+|+...
T Consensus 220 pvilVlNK~Dl~~~ 233 (550)
T 2qpt_A 220 KIRVVLNKADMVET 233 (550)
T ss_dssp GEEEEEECGGGSCH
T ss_pred CEEEEEECCCccCH
Confidence 99999999998763
No 194
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.71 E-value=1.2e-17 Score=125.36 Aligned_cols=156 Identities=10% Similarity=0.163 Sum_probs=72.7
Q ss_pred CccEEEEEcCCCCChHHHHHhhhcCCcccc---------cCccceeEEEE--EE--CCeEEEEEEcCCChhhH-------
Q 030233 16 CRIKLLMVGLDASGKTTILYKMKLGEIVTT---------TPTIGFNVEAV--EY--KNKSFCVWDVGGQNKIR------- 75 (181)
Q Consensus 16 ~~~~i~~~G~~~~GKssl~~~~~~~~~~~~---------~~~~~~~~~~~--~~--~~~~~~i~d~~g~~~~~------- 75 (181)
-.++|+++|++|+|||||++++++..++.. .++.+.....+ +. ....+++||++|.....
T Consensus 30 vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~ 109 (418)
T 2qag_C 30 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ 109 (418)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CH
T ss_pred CCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHH
Confidence 457899999999999999999998765211 11222111111 11 22478999999975531
Q ss_pred HH-------H-----------HhhccCCCEEEEEEECCCc-ccHHHHH-HHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC
Q 030233 76 AL-------W-----------RHYFRDTLGLTFVVDSSDR-ERISEAR-NELHQILSDNELSNAALLVFANKQDLPNVMP 135 (181)
Q Consensus 76 ~~-------~-----------~~~~~~~d~ii~v~d~~~~-~s~~~~~-~~~~~~~~~~~~~~~piilv~nK~D~~~~~~ 135 (181)
.+ . ...+.++++.+++|+.... .+++... .++..+ . .+.|+|+|+||+|+.....
T Consensus 110 ~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L-~----~~v~iIlVinK~Dll~~~e 184 (418)
T 2qag_C 110 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRL-H----EKVNIIPLIAKADTLTPEE 184 (418)
T ss_dssp HHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHH-T----TTSEEEEEEESTTSSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHH-h----ccCcEEEEEEcccCccHHH
Confidence 11 0 1123344443444433322 3455554 344444 2 3689999999999875222
Q ss_pred HHHHHhhhCccccCCccEEEEEeeccCCCCHHHHHHHHHhhh
Q 030233 136 TAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNI 177 (181)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~ 177 (181)
...+.... ...+...+++++++||.++.+++++|..+...+
T Consensus 185 v~~~k~~i-~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~i 225 (418)
T 2qag_C 185 CQQFKKQI-MKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL 225 (418)
T ss_dssp HHHHHHHH-HHHHHHHTCCCCCCC-----------------C
T ss_pred HHHHHHHH-HHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhhC
Confidence 22111111 111123456799999999999999988887654
No 195
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.71 E-value=5e-17 Score=109.70 Aligned_cols=173 Identities=16% Similarity=0.244 Sum_probs=115.3
Q ss_pred HHhhhhCCCCccEEEEEcCCC-CChHHHHHhhhcCC-cc-------cccC--ccceeEE-----EEEE------------
Q 030233 7 RLAKRFFPQCRIKLLMVGLDA-SGKTTILYKMKLGE-IV-------TTTP--TIGFNVE-----AVEY------------ 58 (181)
Q Consensus 7 ~~~~~~~~~~~~~i~~~G~~~-~GKssl~~~~~~~~-~~-------~~~~--~~~~~~~-----~~~~------------ 58 (181)
++.+++.++..+++++.|+.- .=..+|+.++.... .. .... ..|+... .+++
T Consensus 6 ~~~~s~~~~~~pr~amfgpgle~~~~~lv~~~m~~~~~~p~~g~~~~~~~gigsgv~~~~~~~~~fni~tlys~~~~er~ 85 (227)
T 3l82_B 6 SFLHSLIIQNEPRFAMFGPGLEELNTSLVLSLMSSEELCPTAGLPQRQIDGIGSGVNFQLNNQHKFNILILYSTTRKERD 85 (227)
T ss_dssp CSSSCCCCCCCCEEEEECGGGTSSSSCHHHHHHTCCSSCCEECCGGGCCTTSCCCEEEESSSSCEEEEEECSCC------
T ss_pred HHHHHhccCCCceEEEecCCcccccHHHHHHHhcCCCcccccCCCCCCcCccccceEEEECCeeEEEEEEeccCcHHHhh
Confidence 456678899999999999642 44668999998765 11 1111 1112111 1111
Q ss_pred --------CCeEEEEEEcC------CChhhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHH---HHHHcCCC-CCCCe
Q 030233 59 --------KNKSFCVWDVG------GQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNEL---HQILSDNE-LSNAA 120 (181)
Q Consensus 59 --------~~~~~~i~d~~------g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~---~~~~~~~~-~~~~p 120 (181)
.-.++.....| |+..++..|..+++++|++|||+|.+|++.+. ....+ ..++.... ..+.|
T Consensus 86 ~~~~~~~~~~~k~~~~~~~~~~~~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gap 164 (227)
T 3l82_B 86 RAREEHTSAVNKMFSRHNEGDDQQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRP 164 (227)
T ss_dssp -------------------------------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSC
T ss_pred hhhhhhhhhhhhcccccCCCccccCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCe
Confidence 01233344444 78888999999999999999999999886554 44444 34444432 36899
Q ss_pred EEEEEeCC-CCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHHHHHHhhhhccC
Q 030233 121 LLVFANKQ-DLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNISVKN 181 (181)
Q Consensus 121 iilv~nK~-D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~ 181 (181)
+++++||. |++...+..++.+.+.+.... +.+.+..|||.+|+|+.+-++||.+.+..++
T Consensus 165 LLVlANKqqDlp~Ams~~EI~e~L~L~~l~-R~W~Iq~csA~TGeGL~EGLdWL~~~l~~k~ 225 (227)
T 3l82_B 165 LLVLSCISQGDVKRMPCFYLAHELHLNLLN-HPWLVQDTEAETLTGFLNGIEWILEEVESKR 225 (227)
T ss_dssp EEEEEEESSTTSCBCCHHHHHHHTTGGGGC-SCEEEEEEETTTCTTHHHHHHHHTTTTTTC-
T ss_pred EEEEeCCCcCccCCCCHHHHHHHcCCcCCC-CCEEEEEeECCCCcCHHHHHHHHHHHHHhhc
Confidence 99999995 788888999999999887664 7899999999999999999999999987653
No 196
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.69 E-value=5.3e-17 Score=131.52 Aligned_cols=113 Identities=16% Similarity=0.071 Sum_probs=85.6
Q ss_pred CCCccEEEEEcCCCCChHHHHHhhhcCC------------cc-------cccCccceeEEEEEEC---------------
Q 030233 14 PQCRIKLLMVGLDASGKTTILYKMKLGE------------IV-------TTTPTIGFNVEAVEYK--------------- 59 (181)
Q Consensus 14 ~~~~~~i~~~G~~~~GKssl~~~~~~~~------------~~-------~~~~~~~~~~~~~~~~--------------- 59 (181)
+.+..+|+++|++++|||||+++++... +. ....|+......+.+.
T Consensus 16 ~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~ 95 (842)
T 1n0u_A 16 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDG 95 (842)
T ss_dssp GGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCS
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccC
Confidence 3456789999999999999999998641 11 1122333333334343
Q ss_pred -CeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCC
Q 030233 60 -NKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLP 131 (181)
Q Consensus 60 -~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~ 131 (181)
+..+.+|||||+.+|...+..+++.+|++|+|+|+.+..+++....|.. ... .++|+++++||+|+.
T Consensus 96 ~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~-~~~----~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 96 NSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQ-ALG----ERIKPVVVINKVDRA 163 (842)
T ss_dssp SEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHH-HHH----TTCEEEEEEECHHHH
T ss_pred CCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHH-HHH----cCCCeEEEEECCCcc
Confidence 6789999999999999999999999999999999998877777554443 322 368999999999986
No 197
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.69 E-value=3.5e-17 Score=120.74 Aligned_cols=150 Identities=17% Similarity=0.161 Sum_probs=87.3
Q ss_pred CccEEEEEcCCCCChHHHHHhhhcC------C--cccccCcc-----------------------------------cee
Q 030233 16 CRIKLLMVGLDASGKTTILYKMKLG------E--IVTTTPTI-----------------------------------GFN 52 (181)
Q Consensus 16 ~~~~i~~~G~~~~GKssl~~~~~~~------~--~~~~~~~~-----------------------------------~~~ 52 (181)
....|+++|.+|+|||||+|++++. . .....|+. +++
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg~t 152 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGVT 152 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------CCSTTCTTEEEECC---------C
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCccccccch
Confidence 3678999999999999999999862 1 00000000 000
Q ss_pred EE------EEEECCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEe
Q 030233 53 VE------AVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFAN 126 (181)
Q Consensus 53 ~~------~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~n 126 (181)
.. .+...+..+.++||+|.... .......+|.+++|+|+.+++..+.+.. .+ ...|.++|+|
T Consensus 153 r~~~~~~~~~~~~~~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i------l~~~~ivVlN 220 (349)
T 2www_A 153 RTTNEAILLCEGAGYDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR---GI------IEMADLVAVT 220 (349)
T ss_dssp TTHHHHHHHHHHTTCSEEEEECCCC--C---HHHHHTTCSEEEEEECCC---------------------CCSCSEEEEC
T ss_pred HHHHHHHHhhccCCCCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH------HhcCCEEEEe
Confidence 00 00125568899999995322 2334568999999999976533221111 11 2357899999
Q ss_pred CCCCCCCCCH----HHHHhhhCcccc--CCccEEEEEeeccCCCCHHHHHHHHHhhh
Q 030233 127 KQDLPNVMPT----AEVADKLELYSL--GQRRWSIQSCSAISGQGLYEGLDWLSNNI 177 (181)
Q Consensus 127 K~D~~~~~~~----~~~~~~~~~~~~--~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~ 177 (181)
|+|+.+.... ..+...+..... ..+..+++.+||++|+|+++++++|.+.+
T Consensus 221 K~Dl~~~~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~ 277 (349)
T 2www_A 221 KSDGDLIVPARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQ 277 (349)
T ss_dssp CCSGGGHHHHHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred eecCCCchhHHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHH
Confidence 9998642111 122222221110 11234789999999999999999998765
No 198
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.68 E-value=2.7e-17 Score=114.05 Aligned_cols=149 Identities=17% Similarity=0.198 Sum_probs=92.3
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhcCCccc-------ccCcc----------ceeEEEE------------------EEC
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKLGEIVT-------TTPTI----------GFNVEAV------------------EYK 59 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~~-------~~~~~----------~~~~~~~------------------~~~ 59 (181)
.+..+|+++|.+|+|||||++++++..... ..+.. +.....+ ...
T Consensus 28 ~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (221)
T 2wsm_A 28 SGTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFS 107 (221)
T ss_dssp HTCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGT
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcC
Confidence 456789999999999999999998642110 00100 1111111 113
Q ss_pred CeEEEEEEcCCChhhHHHHHhhc-cCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--CCH
Q 030233 60 NKSFCVWDVGGQNKIRALWRHYF-RDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV--MPT 136 (181)
Q Consensus 60 ~~~~~i~d~~g~~~~~~~~~~~~-~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~--~~~ 136 (181)
+..+.+|||+|.... +..+ ...+.+++|+|+.+.... ...+ ... .+.|+++|+||+|+.+. ...
T Consensus 108 ~~d~iiidt~G~~~~----~~~~~~~~~~~i~vvd~~~~~~~--~~~~-~~~------~~~~~iiv~NK~Dl~~~~~~~~ 174 (221)
T 2wsm_A 108 DCDLLLIENVGNLIC----PVDFDLGENYRVVMVSVTEGDDV--VEKH-PEI------FRVADLIVINKVALAEAVGADV 174 (221)
T ss_dssp TCSEEEEEEEEBSSG----GGGCCCSCSEEEEEEEGGGCTTH--HHHC-HHH------HHTCSEEEEECGGGHHHHTCCH
T ss_pred CCCEEEEeCCCCCCC----CchhccccCcEEEEEeCCCcchh--hhhh-hhh------hhcCCEEEEecccCCcchhhHH
Confidence 457889999994111 1111 256889999998754321 1111 111 14688999999998542 244
Q ss_pred HHHHhhhCccccCCccEEEEEeeccCCCCHHHHHHHHHhhhhc
Q 030233 137 AEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNISV 179 (181)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 179 (181)
+++....... ....+++++||++|+|++++++++.+.+..
T Consensus 175 ~~~~~~~~~~---~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~ 214 (221)
T 2wsm_A 175 EKMKADAKLI---NPRAKIIEMDLKTGKGFEEWIDFLRGILNV 214 (221)
T ss_dssp HHHHHHHHHH---CTTSEEEECBTTTTBTHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHh---CCCCeEEEeecCCCCCHHHHHHHHHHHHHH
Confidence 4444433211 234579999999999999999999987754
No 199
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.67 E-value=7.2e-16 Score=122.58 Aligned_cols=155 Identities=15% Similarity=0.150 Sum_probs=97.0
Q ss_pred CccEEEEEcCCCCChHHHHHhhhcCCcccccC--cc--------------------------------------------
Q 030233 16 CRIKLLMVGLDASGKTTILYKMKLGEIVTTTP--TI-------------------------------------------- 49 (181)
Q Consensus 16 ~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~--~~-------------------------------------------- 49 (181)
.-++|+++|.+++|||||+|++++..+.+... ++
T Consensus 50 ~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~ 129 (772)
T 3zvr_A 50 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 129 (772)
T ss_dssp CCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhc
Confidence 45799999999999999999999977521110 00
Q ss_pred ----cee----EEEEEE-CCeEEEEEEcCCChh-------------hHHHHHhhc-cCCCEEEEEEECCCcccHHHHHHH
Q 030233 50 ----GFN----VEAVEY-KNKSFCVWDVGGQNK-------------IRALWRHYF-RDTLGLTFVVDSSDRERISEARNE 106 (181)
Q Consensus 50 ----~~~----~~~~~~-~~~~~~i~d~~g~~~-------------~~~~~~~~~-~~~d~ii~v~d~~~~~s~~~~~~~ 106 (181)
++. ...+.. ....+.++||||... .......++ ..+|++++|+|++....-......
T Consensus 130 g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~l 209 (772)
T 3zvr_A 130 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKI 209 (772)
T ss_dssp CSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHH
T ss_pred CCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHH
Confidence 000 001111 234688999999432 333444444 478999999999864322222222
Q ss_pred HHHHHcCCCCCCCeEEEEEeCCCCCCCCCH-HHHHhhhCccccCCccEEEEEeeccCCCCHHHHHHHHHh
Q 030233 107 LHQILSDNELSNAALLVFANKQDLPNVMPT-AEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSN 175 (181)
Q Consensus 107 ~~~~~~~~~~~~~piilv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~ 175 (181)
+..+ .. .+.|+++|+||+|+.+.... ..+... ..........+++.+||++|.|++++++.+.+
T Consensus 210 l~~L-~~---~g~pvIlVlNKiDlv~~~~~~~~il~~-~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~ 274 (772)
T 3zvr_A 210 AKEV-DP---QGQRTIGVITKLDLMDEGTDARDVLEN-KLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 274 (772)
T ss_dssp HHHH-CT---TCSSEEEEEECTTSSCTTCCSHHHHTT-CSSCCSSCEEECCCCCCEESSSSEEHHHHHHH
T ss_pred HHHH-Hh---cCCCEEEEEeCcccCCcchhhHHHHHH-HhhhhhccCCceEEecccccccchhHHHHHHH
Confidence 3333 32 47899999999999764332 222221 11111223457899999999999999998876
No 200
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.66 E-value=1.3e-16 Score=113.41 Aligned_cols=116 Identities=12% Similarity=-0.024 Sum_probs=68.9
Q ss_pred eEEEEEEcCCChhhHHHH------HhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC
Q 030233 61 KSFCVWDVGGQNKIRALW------RHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVM 134 (181)
Q Consensus 61 ~~~~i~d~~g~~~~~~~~------~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~ 134 (181)
..+.+|||||........ ...+.. +++++++|+....+..................+.|+++|+||+|+....
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~~ 187 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEE 187 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHH
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEecccccccc
Confidence 479999999987654331 124456 8999999885433322222111111110011368999999999987532
Q ss_pred CHHHHHhhhCc--------------------------cccCCccEEEEEeeccCCCCHHHHHHHHHhhhh
Q 030233 135 PTAEVADKLEL--------------------------YSLGQRRWSIQSCSAISGQGLYEGLDWLSNNIS 178 (181)
Q Consensus 135 ~~~~~~~~~~~--------------------------~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~ 178 (181)
..+++.+.+.. .. .....+++++||++|+|++++++++.+.+.
T Consensus 188 ~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~ 256 (262)
T 1yrb_A 188 EKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTE-VLPPVRVLYLSAKTREGFEDLETLAYEHYC 256 (262)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHH-HSCCCCCEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHH-hcCcccceEEEecCcccHHHHHHHHHHHhc
Confidence 22222221100 00 012236899999999999999999988765
No 201
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.66 E-value=5.5e-17 Score=128.07 Aligned_cols=156 Identities=17% Similarity=0.180 Sum_probs=108.9
Q ss_pred EEEEEcCCCCChHHHHHhhhcC--Ccc------------c-------ccCccceeEEEEEECCeEEEEEEcCCChhhHHH
Q 030233 19 KLLMVGLDASGKTTILYKMKLG--EIV------------T-------TTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRAL 77 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~~--~~~------------~-------~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~ 77 (181)
+|+++|+.++|||||..+++.. ... + ...|+......+.+.+..++++|||||.+|...
T Consensus 4 Ni~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~E 83 (638)
T 3j25_A 4 NIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLAE 83 (638)
T ss_dssp CCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHHH
Confidence 5899999999999999999631 110 0 122344444456778899999999999999999
Q ss_pred HHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHH---HHhhhCcc--------
Q 030233 78 WRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAE---VADKLELY-------- 146 (181)
Q Consensus 78 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~---~~~~~~~~-------- 146 (181)
....++-+|++|+|+|+...-.- .....|....+. ++|.++++||+|......... +.+.+...
T Consensus 84 v~raL~~~DgavlVVDa~~GV~~-qT~~v~~~a~~~----~lp~i~~INKmDr~~a~~~~~~~~i~~~l~~~~~~~~~~~ 158 (638)
T 3j25_A 84 VYRSLSVLDGAILLISAKDGVQA-QTRILFHALRKM----GIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVE 158 (638)
T ss_dssp HHHHHTTCSEEECCEESSCTTCS-HHHHHHHHHHHH----TCSCEECCEECCSSSCCSHHHHHHHHHTTCCCCCCCCCCC
T ss_pred HHHHHHHhCEEEEEEeCCCCCcH-HHHHHHHHHHHc----CCCeEEEEeccccccCCHHHHHHHHHHHhCCCccccceeE
Confidence 99999999999999999753221 223334444333 789999999999866443322 22211100
Q ss_pred ------------------------------------------------ccCCccEEEEEeeccCCCCHHHHHHHHHhhhh
Q 030233 147 ------------------------------------------------SLGQRRWSIQSCSAISGQGLYEGLDWLSNNIS 178 (181)
Q Consensus 147 ------------------------------------------------~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~ 178 (181)
.....-.+++..||.+|.|++.+++.+.+.+.
T Consensus 159 ~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~i~~~~p 238 (638)
T 3j25_A 159 LYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSNIGIDNLIEVITNKFY 238 (638)
T ss_dssp SCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCSTTCCSHHHHHHHHHHSCC
T ss_pred eeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcccccccccccccccCCCchhHhhhhhcccc
Confidence 00112357888999999999999999988765
Q ss_pred c
Q 030233 179 V 179 (181)
Q Consensus 179 ~ 179 (181)
.
T Consensus 239 ~ 239 (638)
T 3j25_A 239 S 239 (638)
T ss_dssp C
T ss_pred C
Confidence 3
No 202
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.64 E-value=1.3e-16 Score=117.43 Aligned_cols=108 Identities=14% Similarity=0.112 Sum_probs=66.8
Q ss_pred CCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHH-
Q 030233 59 KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTA- 137 (181)
Q Consensus 59 ~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~- 137 (181)
.+..+.++||||....... ....+|++++|+|+...+.+..+.. .. .+.|.++|+||+|+.+.....
T Consensus 147 ~~~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~~l~~---~~------~~~p~ivv~NK~Dl~~~~~~~~ 214 (341)
T 2p67_A 147 AGYDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGIKK---GL------MEVADLIVINKDDGDNHTNVAI 214 (341)
T ss_dssp TTCSEEEEEEECCTTHHHH---HHTTCSEEEEEECC------CCCCH---HH------HHHCSEEEECCCCTTCHHHHHH
T ss_pred cCCCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHHHHHHHH---hh------hcccCEEEEECCCCCChHHHHH
Confidence 4678999999996654432 3578999999999975432211100 00 145789999999987532222
Q ss_pred ---HHHhhhCcccc--CCccEEEEEeeccCCCCHHHHHHHHHhhhh
Q 030233 138 ---EVADKLELYSL--GQRRWSIQSCSAISGQGLYEGLDWLSNNIS 178 (181)
Q Consensus 138 ---~~~~~~~~~~~--~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~ 178 (181)
++...+..... ..+..+++++||++|+|+++++++|.+.+.
T Consensus 215 ~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 215 ARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp HHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 12221111100 112347899999999999999999988654
No 203
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.64 E-value=6.6e-15 Score=108.35 Aligned_cols=80 Identities=24% Similarity=0.239 Sum_probs=56.5
Q ss_pred ccEEEEEcCCCCChHHHHHhhhcCCcc--cc-cCccceeEEEEEECC-----------------eEEEEEEcCCChhhHH
Q 030233 17 RIKLLMVGLDASGKTTILYKMKLGEIV--TT-TPTIGFNVEAVEYKN-----------------KSFCVWDVGGQNKIRA 76 (181)
Q Consensus 17 ~~~i~~~G~~~~GKssl~~~~~~~~~~--~~-~~~~~~~~~~~~~~~-----------------~~~~i~d~~g~~~~~~ 76 (181)
.++|+++|.+|+|||||+|++.+.... .+ ..|.+.+...+.+.+ ..+.+|||||..++..
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~ 81 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS 81 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCccccc
Confidence 368999999999999999999987621 11 123333333444433 5799999999876542
Q ss_pred ----H---HHhhccCCCEEEEEEECCC
Q 030233 77 ----L---WRHYFRDTLGLTFVVDSSD 96 (181)
Q Consensus 77 ----~---~~~~~~~~d~ii~v~d~~~ 96 (181)
+ ....++.+|++++|+|+++
T Consensus 82 ~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 82 KGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred ccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 1 2345789999999999985
No 204
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.62 E-value=1.8e-14 Score=106.53 Aligned_cols=111 Identities=18% Similarity=0.156 Sum_probs=74.9
Q ss_pred cEEEEEcCCCCChHHHHHhhhcCCc--cc-ccCccceeEEEEEECCeEEEEEEcCCChh-------hHHHHHhhccCCCE
Q 030233 18 IKLLMVGLDASGKTTILYKMKLGEI--VT-TTPTIGFNVEAVEYKNKSFCVWDVGGQNK-------IRALWRHYFRDTLG 87 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~i~d~~g~~~-------~~~~~~~~~~~~d~ 87 (181)
.+|+++|.|++|||||+|++.+... .. ...|.......+.+.+.++++.||||-.. ........++.+|+
T Consensus 73 a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad~ 152 (376)
T 4a9a_A 73 ASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVARTCNL 152 (376)
T ss_dssp EEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHHHHCSE
T ss_pred CeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHHhcCc
Confidence 5899999999999999999998662 12 23455556667888999999999999422 11223455678999
Q ss_pred EEEEEECCCccc-HHHHHHHHHHHHcCCCCCCCeEEEEEeCCCC
Q 030233 88 LTFVVDSSDRER-ISEARNELHQILSDNELSNAALLVFANKQDL 130 (181)
Q Consensus 88 ii~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~~piilv~nK~D~ 130 (181)
+++|+|++++.. ++.+...+... .....+.|.++++||.|.
T Consensus 153 il~vvD~~~p~~~~~~i~~EL~~~--~~~l~~k~~~i~~nK~d~ 194 (376)
T 4a9a_A 153 LFIILDVNKPLHHKQIIEKELEGV--GIRLNKTPPDILIKKKEK 194 (376)
T ss_dssp EEEEEETTSHHHHHHHHHHHHHHT--TEEETCCCCCEEEEECSS
T ss_pred cccccccCccHHHHHHHHHHHHHh--hHhhccCChhhhhhHhhh
Confidence 999999987632 12222222221 112235677777888875
No 205
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.61 E-value=3.5e-14 Score=113.46 Aligned_cols=115 Identities=17% Similarity=0.111 Sum_probs=80.1
Q ss_pred CCCCcc-EEEEEcCCCCChHHHHHhhhcCC--------c------c-------cccCccceeEEEEEE-------CCeEE
Q 030233 13 FPQCRI-KLLMVGLDASGKTTILYKMKLGE--------I------V-------TTTPTIGFNVEAVEY-------KNKSF 63 (181)
Q Consensus 13 ~~~~~~-~i~~~G~~~~GKssl~~~~~~~~--------~------~-------~~~~~~~~~~~~~~~-------~~~~~ 63 (181)
.|..++ +|+++|+.++|||||..+++... . . ....|+......+.+ .++.+
T Consensus 8 ~p~~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~i 87 (709)
T 4fn5_A 8 TPINRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRV 87 (709)
T ss_dssp SCGGGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEE
T ss_pred CchHHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEE
Confidence 344555 59999999999999999996321 0 0 011222233333444 26899
Q ss_pred EEEEcCCChhhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 030233 64 CVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPN 132 (181)
Q Consensus 64 ~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~ 132 (181)
+++|||||.+|.......++-+|++|+|+|+...-.- .....|....+. ++|.++++||+|...
T Consensus 88 NlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~-qT~~v~~~a~~~----~lp~i~~iNKiDr~~ 151 (709)
T 4fn5_A 88 NVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEP-QSETVWRQANKY----GVPRIVYVNKMDRQG 151 (709)
T ss_dssp EEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCH-HHHHHHHHHHHH----TCCEEEEEECSSSTT
T ss_pred EEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCch-hHHHHHHHHHHc----CCCeEEEEccccccC
Confidence 9999999999999999999999999999999754222 223344444443 799999999999865
No 206
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=99.61 E-value=1.1e-15 Score=107.96 Aligned_cols=111 Identities=21% Similarity=0.331 Sum_probs=88.5
Q ss_pred cCCChhhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHH---HHHcCCC-CCCCeEEEEEeC-CCCCCCCCHHHHHhh
Q 030233 68 VGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELH---QILSDNE-LSNAALLVFANK-QDLPNVMPTAEVADK 142 (181)
Q Consensus 68 ~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~---~~~~~~~-~~~~piilv~nK-~D~~~~~~~~~~~~~ 142 (181)
.+|+...+..|..+++++|++|||+|.+|++.+. ....+. .++.... ..+.|+++++|| -|+....+..++.+.
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~ 272 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHE 272 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHH
Confidence 4578889999999999999999999999987654 333222 3343221 257999999996 589888999999999
Q ss_pred hCccccCCccEEEEEeeccCCCCHHHHHHHHHhhhhcc
Q 030233 143 LELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNISVK 180 (181)
Q Consensus 143 ~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~ 180 (181)
+.+.... +.+.+..|||.+|+|+.+-++|+.+.+.++
T Consensus 273 L~L~~l~-r~W~Iq~csA~tGeGL~EGldWL~~~l~~k 309 (312)
T 3l2o_B 273 LHLNLLN-HPWLVQDTEAETLTGFLNGIEWILEEVESK 309 (312)
T ss_dssp TTGGGGC-SCEEEEEEETTTCTTHHHHHHHHHHHSCC-
T ss_pred cCCccCC-CcEEEEecccCCCcCHHHHHHHHHHHHHhh
Confidence 9887664 789999999999999999999999998765
No 207
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.56 E-value=3.5e-17 Score=113.85 Aligned_cols=59 Identities=15% Similarity=0.188 Sum_probs=42.7
Q ss_pred CeEEEEEeCCCCCCC--CCHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHHHHHHhhhhcc
Q 030233 119 AALLVFANKQDLPNV--MPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNISVK 180 (181)
Q Consensus 119 ~piilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~ 180 (181)
.|.++|+||+|+.+. ...+++....... ....+++++||++|+|++++|+++.+.+..+
T Consensus 165 ~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~---~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~ 225 (226)
T 2hf9_A 165 TADLIVINKIDLADAVGADIKKMENDAKRI---NPDAEVVLLSLKTMEGFDKVLEFIEKSVKEV 225 (226)
T ss_dssp TCSEEEEECGGGHHHHTCCHHHHHHHHHHH---CTTSEEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred cCCEEEEeccccCchhHHHHHHHHHHHHHh---CCCCeEEEEEecCCCCHHHHHHHHHHHHHhh
Confidence 577999999998642 2344443333211 2345799999999999999999999887654
No 208
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.54 E-value=6.6e-14 Score=103.56 Aligned_cols=79 Identities=20% Similarity=0.219 Sum_probs=53.8
Q ss_pred cEEEEEcCCCCChHHHHHhhhcCCc--ccc-cCccceeEEEEEE---------------------CCeEEEEEEcCCChh
Q 030233 18 IKLLMVGLDASGKTTILYKMKLGEI--VTT-TPTIGFNVEAVEY---------------------KNKSFCVWDVGGQNK 73 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~~~~--~~~-~~~~~~~~~~~~~---------------------~~~~~~i~d~~g~~~ 73 (181)
++|+++|.+|+|||||+|++.+... ..+ ..|...+.....+ ....+.+|||||...
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 5789999999999999999987531 111 1122222222222 245799999999754
Q ss_pred h-------HHHHHhhccCCCEEEEEEECCC
Q 030233 74 I-------RALWRHYFRDTLGLTFVVDSSD 96 (181)
Q Consensus 74 ~-------~~~~~~~~~~~d~ii~v~d~~~ 96 (181)
. .......++.+|++++|+|+.+
T Consensus 82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred cccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 3 2334456789999999999975
No 209
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.51 E-value=2.9e-14 Score=104.61 Aligned_cols=152 Identities=14% Similarity=0.135 Sum_probs=88.0
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhc------CCc--ccccCc--------------cc-----eeEEE------------
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKL------GEI--VTTTPT--------------IG-----FNVEA------------ 55 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~------~~~--~~~~~~--------------~~-----~~~~~------------ 55 (181)
.+...++++|++|+|||||++.+++ +.. ....+. ++ .....
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G~ 132 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGV 132 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccccCcccccccch
Confidence 4456899999999999999999974 221 000000 00 00000
Q ss_pred ----------EEECCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEE
Q 030233 56 ----------VEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFA 125 (181)
Q Consensus 56 ----------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~ 125 (181)
+...+..+.++||||...-.. .....+|.+++++|+...+..+.+.... ...+.++++
T Consensus 133 tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~---~v~~~~d~vl~v~d~~~~~~~~~i~~~i---------~~~~~ivvl 200 (337)
T 2qm8_A 133 AAKTRETMLLCEAAGFDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDELQGIKKGI---------FELADMIAV 200 (337)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC------CCTTH---------HHHCSEEEE
T ss_pred HHHHHHHHHHHhcCCCCEEEEECCCCCcchh---hHHhhCCEEEEEEcCCCcccHHHHHHHH---------hccccEEEE
Confidence 112577899999999644221 2346799999999986433221111101 123557788
Q ss_pred eCCCCCCCCC-----HHHHHhhhCcccc--CCccEEEEEeeccCCCCHHHHHHHHHhhhh
Q 030233 126 NKQDLPNVMP-----TAEVADKLELYSL--GQRRWSIQSCSAISGQGLYEGLDWLSNNIS 178 (181)
Q Consensus 126 nK~D~~~~~~-----~~~~~~~~~~~~~--~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~ 178 (181)
||+|+..... .+.+......... ..+..+++.+||++|.|++++++.|.+...
T Consensus 201 NK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 201 NKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp ECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred EchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 9999754211 1222222222110 011346888999999999999999987653
No 210
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.34 E-value=7.8e-13 Score=95.72 Aligned_cols=100 Identities=19% Similarity=0.147 Sum_probs=72.1
Q ss_pred ChhhHHHHHhhccCCCEEEEEEECCCcc-cHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccC
Q 030233 71 QNKIRALWRHYFRDTLGLTFVVDSSDRE-RISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLG 149 (181)
Q Consensus 71 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~ 149 (181)
++++..+...++.++|++++|+|+++++ ++..+..|+..+.. .++|+++|+||+|+.+....+........ +.
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~----~~~~~ilV~NK~DL~~~~~v~~~~~~~~~--~~ 139 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY----FKVEPVIVFNKIDLLNEEEKKELERWISI--YR 139 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH----TTCEEEEEECCGGGCCHHHHHHHHHHHHH--HH
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh----CCCCEEEEEEcccCCCccccHHHHHHHHH--HH
Confidence 5556666667899999999999999886 88888888876543 47999999999999753210111111111 11
Q ss_pred CccEEEEEeeccCCCCHHHHHHHHHhh
Q 030233 150 QRRWSIQSCSAISGQGLYEGLDWLSNN 176 (181)
Q Consensus 150 ~~~~~~~~~Sa~~~~~i~~l~~~i~~~ 176 (181)
..+.+++++||++|+|++++++.+...
T Consensus 140 ~~g~~~~~~SA~~g~gi~~L~~~l~G~ 166 (302)
T 2yv5_A 140 DAGYDVLKVSAKTGEGIDELVDYLEGF 166 (302)
T ss_dssp HTTCEEEECCTTTCTTHHHHHHHTTTC
T ss_pred HCCCeEEEEECCCCCCHHHHHhhccCc
Confidence 224579999999999999999887653
No 211
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.33 E-value=3.7e-12 Score=94.67 Aligned_cols=84 Identities=19% Similarity=0.173 Sum_probs=51.7
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhcCCccc---ccCccceeEEEEEEC-----------------CeEEEEEEcCCChhh
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKLGEIVT---TTPTIGFNVEAVEYK-----------------NKSFCVWDVGGQNKI 74 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~~---~~~~~~~~~~~~~~~-----------------~~~~~i~d~~g~~~~ 74 (181)
...++|+++|.+|+|||||+|++.+..... ...|...+...+.+. ...+.+|||||....
T Consensus 20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~ 99 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKG 99 (396)
T ss_dssp SSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC----
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccc
Confidence 456899999999999999999999875311 122333334444432 346999999997764
Q ss_pred HH-------HHHhhccCCCEEEEEEECCCcc
Q 030233 75 RA-------LWRHYFRDTLGLTFVVDSSDRE 98 (181)
Q Consensus 75 ~~-------~~~~~~~~~d~ii~v~d~~~~~ 98 (181)
.. .+...++.+|++++|+|+.+.+
T Consensus 100 as~~~glg~~~l~~ir~aD~Il~VvD~~~~~ 130 (396)
T 2ohf_A 100 AHNGQGLGNAFLSHISACDGIFHLTRAFEDD 130 (396)
T ss_dssp -------CCHHHHHHHTSSSEEEEEEC----
T ss_pred cchhhHHHHHHHHHHHhcCeEEEEEecCCCc
Confidence 43 4566788999999999997543
No 212
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.12 E-value=1.8e-10 Score=86.37 Aligned_cols=138 Identities=16% Similarity=0.182 Sum_probs=72.2
Q ss_pred CccEEEEEcCCCCChHHHHHhhhcCCcccc---cCccceeEEEEEE---C-C--eEEEEEEcCCChhh------------
Q 030233 16 CRIKLLMVGLDASGKTTILYKMKLGEIVTT---TPTIGFNVEAVEY---K-N--KSFCVWDVGGQNKI------------ 74 (181)
Q Consensus 16 ~~~~i~~~G~~~~GKssl~~~~~~~~~~~~---~~~~~~~~~~~~~---~-~--~~~~i~d~~g~~~~------------ 74 (181)
..++++++|++|+|||||+|.++|...... ....+.....+.+ . . ..+.++|++|....
T Consensus 41 ei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~ 120 (427)
T 2qag_B 41 FCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVE 120 (427)
T ss_dssp CEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHH
T ss_pred CeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHH
Confidence 346799999999999999999998753211 1112222222211 1 1 37899999984321
Q ss_pred --HHHHHhhc-------------cC--CCE-EEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH
Q 030233 75 --RALWRHYF-------------RD--TLG-LTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPT 136 (181)
Q Consensus 75 --~~~~~~~~-------------~~--~d~-ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~ 136 (181)
...+..++ .+ +|+ ++++.|... ++...+..+...+. .+.|+|+|.||+|.......
T Consensus 121 ~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~--~l~~~Dieilk~L~----~~~~vI~Vi~KtD~Lt~~E~ 194 (427)
T 2qag_B 121 FIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGH--SLKSLDLVTMKKLD----SKVNIIPIIAKADAISKSEL 194 (427)
T ss_dssp HHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC-----CHHHHHHHHHTC----SCSEEEEEESCGGGSCHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCC--CCCHHHHHHHHHHh----hCCCEEEEEcchhccchHHH
Confidence 11111111 11 234 445556543 33334333444433 47899999999998764333
Q ss_pred HHHHhhhCccccCCccEEEEEeec
Q 030233 137 AEVADKLELYSLGQRRWSIQSCSA 160 (181)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~Sa 160 (181)
..+...+.. .+...+++++.+|.
T Consensus 195 ~~l~~~I~~-~L~~~gi~I~~is~ 217 (427)
T 2qag_B 195 TKFKIKITS-ELVSNGVQIYQFPT 217 (427)
T ss_dssp HHHHHHHHH-HHBTTBCCCCCCC-
T ss_pred HHHHHHHHH-HHHHcCCcEEecCC
Confidence 333333321 11334556666664
No 213
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.11 E-value=6.2e-11 Score=87.96 Aligned_cols=101 Identities=20% Similarity=0.130 Sum_probs=68.0
Q ss_pred CChhhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC-HHHHHhhhCc--c
Q 030233 70 GQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMP-TAEVADKLEL--Y 146 (181)
Q Consensus 70 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~-~~~~~~~~~~--~ 146 (181)
..++|++....+++.++++++|+|+.++. ..|...+.+. ..+.|+++|+||+|+.+... .+.+.+.... .
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~--~~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~ 127 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRF--VGNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAK 127 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHH--SSSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHH--hCCCcEEEEEEChhcCCcccCHHHHHHHHHHHHH
Confidence 46889999999999999999999998753 2232222221 13689999999999975432 2233222110 0
Q ss_pred ccCCccEEEEEeeccCCCCHHHHHHHHHhhh
Q 030233 147 SLGQRRWSIQSCSAISGQGLYEGLDWLSNNI 177 (181)
Q Consensus 147 ~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~ 177 (181)
..+....+++.+||++|+|++++++.+.+..
T Consensus 128 ~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~ 158 (368)
T 3h2y_A 128 QLGLKPEDVFLISAAKGQGIAELADAIEYYR 158 (368)
T ss_dssp HTTCCCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HcCCCcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence 0111122699999999999999999997654
No 214
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=99.10 E-value=1.8e-09 Score=82.83 Aligned_cols=153 Identities=16% Similarity=0.099 Sum_probs=86.0
Q ss_pred CccEEEEEcCCCCChHHHHHhhh------cCCcc--c---ccCc-----------cceeEEE-----------------E
Q 030233 16 CRIKLLMVGLDASGKTTILYKMK------LGEIV--T---TTPT-----------IGFNVEA-----------------V 56 (181)
Q Consensus 16 ~~~~i~~~G~~~~GKssl~~~~~------~~~~~--~---~~~~-----------~~~~~~~-----------------~ 56 (181)
+...|+++|.+|+||||+++.++ +.... . +.+. .++.... .
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~ 179 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF 179 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence 34579999999999999999998 44311 0 0110 0111111 0
Q ss_pred EECCeEEEEEEcCCChhhH----HHHHhh--ccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeE-EEEEeCCC
Q 030233 57 EYKNKSFCVWDVGGQNKIR----ALWRHY--FRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAAL-LVFANKQD 129 (181)
Q Consensus 57 ~~~~~~~~i~d~~g~~~~~----~~~~~~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pi-ilv~nK~D 129 (181)
...+..+.++||||..... ...... ...+|.+++|+|+............+.. ..|+ .+|+||+|
T Consensus 180 ~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~~a~~~~~--------~~~i~gvVlNK~D 251 (504)
T 2j37_W 180 KNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQAKAFKD--------KVDVASVIVTKLD 251 (504)
T ss_dssp HHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHHHHHHHHH--------HHCCCCEEEECTT
T ss_pred HHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHHHHHHHHh--------hcCceEEEEeCCc
Confidence 1156789999999965321 111111 2268999999999764332222121211 2464 89999999
Q ss_pred CCCCCCH-HHHHhhhCccc--c--C--Cc----cEEEEEeeccCCCC-HHHHHHHHHhh
Q 030233 130 LPNVMPT-AEVADKLELYS--L--G--QR----RWSIQSCSAISGQG-LYEGLDWLSNN 176 (181)
Q Consensus 130 ~~~~~~~-~~~~~~~~~~~--~--~--~~----~~~~~~~Sa~~~~~-i~~l~~~i~~~ 176 (181)
....... ..+........ . . .. ..+.+.+|+..|.| ++++++++.+.
T Consensus 252 ~~~~~g~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 252 GHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp SCCCCTHHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred cccchHHHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 8753322 12222222110 0 0 00 11234579999999 99999999865
No 215
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.10 E-value=8.3e-12 Score=92.69 Aligned_cols=116 Identities=11% Similarity=0.152 Sum_probs=69.7
Q ss_pred ccEEEEEcCCCCChHHHHHhhhcC-----CcccccCccceeEEEEEE-CCeEEEEEEcCCChhhH--------HHHHhhc
Q 030233 17 RIKLLMVGLDASGKTTILYKMKLG-----EIVTTTPTIGFNVEAVEY-KNKSFCVWDVGGQNKIR--------ALWRHYF 82 (181)
Q Consensus 17 ~~~i~~~G~~~~GKssl~~~~~~~-----~~~~~~~~~~~~~~~~~~-~~~~~~i~d~~g~~~~~--------~~~~~~~ 82 (181)
..+++++|.+|+|||||+|++.+. ......+.++++.....+ -+..+.++||||-.... ......+
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~~~liDtPG~~~~~~~~~~l~~~~l~~~~ 241 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLESGATLYDTPGIINHHQMAHFVDARDLKIIT 241 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECSTTCEEEECCSCCCCSSGGGGSCTTTHHHHS
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeCCCeEEEeCCCcCcHHHHHHHHhHHHHHHHh
Confidence 457999999999999999999986 333333444544444333 22348999999943211 1122222
Q ss_pred --cCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHH
Q 030233 83 --RDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTA 137 (181)
Q Consensus 83 --~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~ 137 (181)
...+.++++++....--+..+.. + ..+.. .+.|+++++||.|.......+
T Consensus 242 ~~~~i~~~~~~l~~~~~~~~g~l~~-l-~~l~~---~~~~~~~v~~k~d~~~~~~~~ 293 (369)
T 3ec1_A 242 PKREIHPRVYQLNEGQTLFFGGLAR-L-DYIKG---GRRSFVCYMANELTVHRTKLE 293 (369)
T ss_dssp CSSCCCCEEEEECTTEEEEETTTEE-E-EEEES---SSEEEEEEECTTSCEEEEEGG
T ss_pred cccccCceEEEEcCCceEEECCEEE-E-EEccC---CCceEEEEecCCcccccccHH
Confidence 56899999999842210001000 1 11122 468999999999986543333
No 216
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.05 E-value=1e-09 Score=81.79 Aligned_cols=82 Identities=20% Similarity=0.224 Sum_probs=57.8
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhcCCcccc----cCccceeEEEEEECC-----------------eEEEEEEcCCCh-
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKLGEIVTT----TPTIGFNVEAVEYKN-----------------KSFCVWDVGGQN- 72 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~----~~~~~~~~~~~~~~~-----------------~~~~i~d~~g~~- 72 (181)
....+++++|++|+|||||+|.+++...... ..|...+...+.+.+ ..+.+||+||..
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~ 97 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK 97 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccccc
Confidence 3467999999999999999999998653111 113334444455543 468999999932
Q ss_pred ------hhHHHHHhhccCCCEEEEEEECCC
Q 030233 73 ------KIRALWRHYFRDTLGLTFVVDSSD 96 (181)
Q Consensus 73 ------~~~~~~~~~~~~~d~ii~v~d~~~ 96 (181)
.+.......++.+|++++|+|+.+
T Consensus 98 ~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 98 GASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 233345566788999999999863
No 217
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.02 E-value=1.7e-10 Score=85.65 Aligned_cols=102 Identities=15% Similarity=0.113 Sum_probs=68.3
Q ss_pred CChhhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC-HHHHHhhhCc--c
Q 030233 70 GQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMP-TAEVADKLEL--Y 146 (181)
Q Consensus 70 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~-~~~~~~~~~~--~ 146 (181)
.+++|++....+++.++++++|+|+.++.+ .....+...+ .+.|+++|+||+|+.+... .+.+.+.... .
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~--s~~~~l~~~l-----~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~ 129 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG--SFIPGLPRFA-----ADNPILLVGNKADLLPRSVKYPKLLRWMRRMAE 129 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG--GCCSSHHHHC-----TTSCEEEEEECGGGSCTTCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC--chhhHHHHHh-----CCCCEEEEEEChhcCCCccCHHHHHHHHHHHHH
Confidence 478899999999899999999999998753 1111122221 3689999999999976432 2333322211 1
Q ss_pred ccCCccEEEEEeeccCCCCHHHHHHHHHhhhh
Q 030233 147 SLGQRRWSIQSCSAISGQGLYEGLDWLSNNIS 178 (181)
Q Consensus 147 ~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~ 178 (181)
..+.....++.+||++|.|++++++.+.+...
T Consensus 130 ~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~~ 161 (369)
T 3ec1_A 130 ELGLCPVDVCLVSAAKGIGMAKVMEAINRYRE 161 (369)
T ss_dssp TTTCCCSEEEECBTTTTBTHHHHHHHHHHHHT
T ss_pred HcCCCcccEEEEECCCCCCHHHHHHHHHhhcc
Confidence 11112236899999999999999999976543
No 218
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=99.01 E-value=3e-10 Score=81.36 Aligned_cols=102 Identities=17% Similarity=0.117 Sum_probs=67.4
Q ss_pred EEEcCCCh-hhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhh
Q 030233 65 VWDVGGQN-KIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKL 143 (181)
Q Consensus 65 i~d~~g~~-~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~ 143 (181)
+-..||+. .........+..+|+++.|+|+.++.+... ..+..++ .+.|.++|+||+|+.+....+...+.+
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~--~~l~~~l-----~~kp~ilVlNK~DL~~~~~~~~~~~~~ 75 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRN--PMIEDIL-----KNKPRIMLLNKADKADAAVTQQWKEHF 75 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSC--HHHHHHC-----SSSCEEEEEECGGGSCHHHHHHHHHHH
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCC--HHHHHHH-----CCCCEEEEEECcccCCHHHHHHHHHHH
Confidence 45678876 455667778899999999999998866542 1222332 368999999999997622222222222
Q ss_pred CccccCCccEEEEEeeccCCCCHHHHHHHHHhhhh
Q 030233 144 ELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNIS 178 (181)
Q Consensus 144 ~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~ 178 (181)
...+.+++.+||.+|.|++++++.+.+.+.
T Consensus 76 -----~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~ 105 (282)
T 1puj_A 76 -----ENQGIRSLSINSVNGQGLNQIVPASKEILQ 105 (282)
T ss_dssp -----HTTTCCEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred -----HhcCCcEEEEECCCcccHHHHHHHHHHHHH
Confidence 122347899999999999999998877654
No 219
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.01 E-value=9.7e-11 Score=86.92 Aligned_cols=119 Identities=13% Similarity=0.158 Sum_probs=68.9
Q ss_pred ccEEEEEcCCCCChHHHHHhhhcCC------cccccCccceeEEEEEE-CCeEEEEEEcCCChhhH--------HHHHhh
Q 030233 17 RIKLLMVGLDASGKTTILYKMKLGE------IVTTTPTIGFNVEAVEY-KNKSFCVWDVGGQNKIR--------ALWRHY 81 (181)
Q Consensus 17 ~~~i~~~G~~~~GKssl~~~~~~~~------~~~~~~~~~~~~~~~~~-~~~~~~i~d~~g~~~~~--------~~~~~~ 81 (181)
..+++++|.+|+|||||+|++.+.. .....+.++++.....+ -+..+.++||||-.... ......
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~~~liDtPG~~~~~~~~~~l~~~~l~~~ 239 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEESSLYDTPGIINHHQMAHYVGKQSLKLI 239 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSSCEEEECCCBCCTTSGGGGSCHHHHHHH
T ss_pred cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCCeEEEeCCCcCcHHHHHHHhhHHHHHHh
Confidence 4689999999999999999998853 22234455555444333 12238999999942211 112222
Q ss_pred --ccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHH
Q 030233 82 --FRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVA 140 (181)
Q Consensus 82 --~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~ 140 (181)
....+.+++++|....--+..+. .+ ..+.. .+.|+++++||+|.......+...
T Consensus 240 ~~~~~i~~~~~~l~~~~~~~~g~l~-~~-d~l~~---~~~~~~~v~nk~d~~~~~~~~~~~ 295 (368)
T 3h2y_A 240 TPTKEIKPMVFQLNEEQTLFFSGLA-RF-DYVSG---GRRAFTCHFSNRLTIHRTKLEKAD 295 (368)
T ss_dssp SCSSCCCCEEEEECTTEEEEETTTE-EE-EEEES---SSEEEEEEECTTSCEEEEEHHHHH
T ss_pred ccccccCceEEEEcCCCEEEEcceE-EE-EEecC---CCceEEEEecCccccccccHHHHH
Confidence 25678899999874210000100 01 11122 468999999999987654444433
No 220
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.99 E-value=1.4e-09 Score=77.32 Aligned_cols=112 Identities=13% Similarity=0.204 Sum_probs=62.6
Q ss_pred ccEEEEEcCCCCChHHHHHhhhcCCccccc-------Cccc-eeEEEEEE------CCeEEEEEEcCCChh---------
Q 030233 17 RIKLLMVGLDASGKTTILYKMKLGEIVTTT-------PTIG-FNVEAVEY------KNKSFCVWDVGGQNK--------- 73 (181)
Q Consensus 17 ~~~i~~~G~~~~GKssl~~~~~~~~~~~~~-------~~~~-~~~~~~~~------~~~~~~i~d~~g~~~--------- 73 (181)
.++++++|++|+|||||+|.+++...+... +... .....+.+ -...++++|++|...
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence 578999999999999999999975422211 0000 01111211 123789999998321
Q ss_pred -hHH--------HHHhh----------ccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 030233 74 -IRA--------LWRHY----------FRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV 133 (181)
Q Consensus 74 -~~~--------~~~~~----------~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~ 133 (181)
... ..... +..+++.++++|... .+++.....+...+.. . .++|+|++|+|....
T Consensus 82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~-~gL~~lD~~~l~~L~~---~-~~vI~Vi~K~D~lt~ 155 (270)
T 3sop_A 82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTG-HSLRPLDLEFMKHLSK---V-VNIIPVIAKADTMTL 155 (270)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCS-SSCCHHHHHHHHHHHT---T-SEEEEEETTGGGSCH
T ss_pred HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCC-CcCCHHHHHHHHHHHh---c-CcEEEEEeccccCCH
Confidence 010 01111 113588899998642 2233333333333333 2 899999999998763
No 221
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.95 E-value=9.9e-09 Score=77.01 Aligned_cols=157 Identities=12% Similarity=0.128 Sum_probs=86.6
Q ss_pred CccEEEEEcCCCCChHHHHHhhhcCCccccc-Ccc-c--ee--EEEEEECC-eEEEEEEcCCChh----hHHH-HHhhcc
Q 030233 16 CRIKLLMVGLDASGKTTILYKMKLGEIVTTT-PTI-G--FN--VEAVEYKN-KSFCVWDVGGQNK----IRAL-WRHYFR 83 (181)
Q Consensus 16 ~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~-~~~-~--~~--~~~~~~~~-~~~~i~d~~g~~~----~~~~-~~~~~~ 83 (181)
....++++|++|+|||||+|.++|-..+... .+. + ++ ....+... ..+.++|++|... .... ....+.
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~ 147 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFY 147 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGG
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHHHHHHHHHcCCC
Confidence 3458999999999999999999985422211 111 0 00 11112222 2589999998432 1111 111233
Q ss_pred CCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCC---------CCCCHHHHHhhhCccc------c
Q 030233 84 DTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLP---------NVMPTAEVADKLELYS------L 148 (181)
Q Consensus 84 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~---------~~~~~~~~~~~~~~~~------~ 148 (181)
..+..++ ++.... ...+..+...+.. .+.|+++|.||.|+. +....+++.+.+.... .
T Consensus 148 ~~~~~~~-lS~G~~---~kqrv~la~aL~~---~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~ 220 (413)
T 1tq4_A 148 EYDFFII-ISATRF---KKNDIDIAKAISM---MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFREN 220 (413)
T ss_dssp GCSEEEE-EESSCC---CHHHHHHHHHHHH---TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHT
T ss_pred ccCCeEE-eCCCCc---cHHHHHHHHHHHh---cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455555 776521 1222222222222 368999999999863 2223343333322110 0
Q ss_pred CCccEEEEEeec--cCCCCHHHHHHHHHhhhhc
Q 030233 149 GQRRWSIQSCSA--ISGQGLYEGLDWLSNNISV 179 (181)
Q Consensus 149 ~~~~~~~~~~Sa--~~~~~i~~l~~~i~~~~~~ 179 (181)
+.....++.+|+ .++.|++++.+.+.+.+.+
T Consensus 221 g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpe 253 (413)
T 1tq4_A 221 GIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPI 253 (413)
T ss_dssp TCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCG
T ss_pred CCCCCcEEEEecCcCCccCHHHHHHHHHHhCcc
Confidence 011225788999 6667799999999887754
No 222
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.90 E-value=9.8e-10 Score=78.67 Aligned_cols=58 Identities=21% Similarity=0.306 Sum_probs=36.9
Q ss_pred CCCccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEE-CCeEEEEEEcCCC
Q 030233 14 PQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEY-KNKSFCVWDVGGQ 71 (181)
Q Consensus 14 ~~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~d~~g~ 71 (181)
....++++++|.+|+|||||+|++.+.......+.++++.....+ .+..+.++||||-
T Consensus 117 ~~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~~~~~~l~DtpG~ 175 (282)
T 1puj_A 117 KPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKVGKELELLDTPGI 175 (282)
T ss_dssp CCCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEEETTTEEEEECCCC
T ss_pred CCCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEEEEeCCCEEEEECcCc
Confidence 346789999999999999999999988755555555554433111 2347899999994
No 223
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.86 E-value=5.4e-10 Score=79.18 Aligned_cols=55 Identities=22% Similarity=0.309 Sum_probs=35.9
Q ss_pred cEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEE-CCeEEEEEEcCCCh
Q 030233 18 IKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEY-KNKSFCVWDVGGQN 72 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~d~~g~~ 72 (181)
++++++|.+|+|||||+|++.+.......++++++.....+ .+..+.+|||||..
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~~~~~l~DtpG~~ 155 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFSLENGVKILDTPGIL 155 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----------CCSCEEECTTSCEEESSCEEC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceEEEEeCCCEEEEECCCcc
Confidence 69999999999999999999988766666666655432222 24578999999943
No 224
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.68 E-value=1.5e-08 Score=76.66 Aligned_cols=153 Identities=17% Similarity=0.181 Sum_probs=80.0
Q ss_pred ccEEEEEcCCCCChHHHHHhhhcC------Cc--cc---ccCc-----------cc--------eeEE-------EE-EE
Q 030233 17 RIKLLMVGLDASGKTTILYKMKLG------EI--VT---TTPT-----------IG--------FNVE-------AV-EY 58 (181)
Q Consensus 17 ~~~i~~~G~~~~GKssl~~~~~~~------~~--~~---~~~~-----------~~--------~~~~-------~~-~~ 58 (181)
...|+++|.+|+||||+++.++.. .. .. +.+. .+ .+.. .+ ..
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~ 178 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKF 178 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHh
Confidence 357999999999999999999762 10 00 0000 00 0000 00 01
Q ss_pred CCeEEEEEEcCCChhhHHH----HH--hhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCC-e-EEEEEeCCCC
Q 030233 59 KNKSFCVWDVGGQNKIRAL----WR--HYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNA-A-LLVFANKQDL 130 (181)
Q Consensus 59 ~~~~~~i~d~~g~~~~~~~----~~--~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-p-iilv~nK~D~ 130 (181)
.+..+.++||||....... .. .....+|.+++|+|+..... .......+ .. .. | ..+|+||+|.
T Consensus 179 ~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~-~~----~~~~i~gvVlnK~D~ 250 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGIQAKAF-KE----AVGEIGSIIVTKLDG 250 (432)
T ss_dssp SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHHHHHHH-HT----TSCSCEEEEEECSSS
T ss_pred hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHHHHHHH-hh----cccCCeEEEEeCCCC
Confidence 5678999999996543211 11 11225899999999864431 11222222 21 34 4 7899999998
Q ss_pred CCCCC-HHHHHhhhCccc--c--C------CccEEEEEeeccCCCC-HHHHHHHHHhhh
Q 030233 131 PNVMP-TAEVADKLELYS--L--G------QRRWSIQSCSAISGQG-LYEGLDWLSNNI 177 (181)
Q Consensus 131 ~~~~~-~~~~~~~~~~~~--~--~------~~~~~~~~~Sa~~~~~-i~~l~~~i~~~~ 177 (181)
..... ...+........ . + ....+...+|+..|.| +..+++.+.+.+
T Consensus 251 ~~~~g~~l~~~~~~~~pi~~ig~Ge~~~dl~~f~~~~~~s~l~g~gdi~~L~e~~~~~~ 309 (432)
T 2v3c_C 251 SAKGGGALSAVAETKAPIKFIGIGEGIDDLEPFDPKKFISRLLGMGDLESLLEKAEDMV 309 (432)
T ss_dssp CSTTHHHHHHHHHSSCCEEEECCSSSSSSCCBCCHHHHHHHHTCSSCSSTTSSTTTSCS
T ss_pred ccchHHHHHHHHHHCCCEEEeecCccccccccCCHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 54221 111222221110 0 0 0011223567778887 777666665443
No 225
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.54 E-value=1.6e-07 Score=70.92 Aligned_cols=109 Identities=20% Similarity=0.188 Sum_probs=62.2
Q ss_pred ccEEEEEcCCCCChHHHHHhhhc------CCc-----ccccC-----------ccceeEEEE-----------------E
Q 030233 17 RIKLLMVGLDASGKTTILYKMKL------GEI-----VTTTP-----------TIGFNVEAV-----------------E 57 (181)
Q Consensus 17 ~~~i~~~G~~~~GKssl~~~~~~------~~~-----~~~~~-----------~~~~~~~~~-----------------~ 57 (181)
+..|+++|.+|+||||++..++. ... ..+.+ ..+...... .
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a~ 179 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYFK 179 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHHH
Confidence 56799999999999999998873 221 00101 111111110 0
Q ss_pred ECCeEEEEEEcCCChhh-----HHHH-HhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCC
Q 030233 58 YKNKSFCVWDVGGQNKI-----RALW-RHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLP 131 (181)
Q Consensus 58 ~~~~~~~i~d~~g~~~~-----~~~~-~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~ 131 (181)
..+..+.++||||.... ..+. ......+|.+++|+|+.......... ..+... -.+..+|+||.|..
T Consensus 180 ~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~a---~~f~~~----~~i~gVIlTKlD~~ 252 (443)
T 3dm5_A 180 SKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQA---LAFKEA----TPIGSIIVTKLDGS 252 (443)
T ss_dssp HTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHH---HHHHHS----CTTEEEEEECCSSC
T ss_pred hCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHHH---HHHHhh----CCCeEEEEECCCCc
Confidence 03478999999994321 1111 11223579999999997543322222 222222 23557899999986
Q ss_pred C
Q 030233 132 N 132 (181)
Q Consensus 132 ~ 132 (181)
.
T Consensus 253 ~ 253 (443)
T 3dm5_A 253 A 253 (443)
T ss_dssp S
T ss_pred c
Confidence 4
No 226
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.53 E-value=1.5e-07 Score=73.63 Aligned_cols=59 Identities=17% Similarity=0.184 Sum_probs=41.0
Q ss_pred CCCccEEEEEcCCCCChHHHHHhhhcCCcc-cccCc-cceeEEEEEE-------CCeEEEEEEcCCCh
Q 030233 14 PQCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPT-IGFNVEAVEY-------KNKSFCVWDVGGQN 72 (181)
Q Consensus 14 ~~~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~-~~~~~~~~~~-------~~~~~~i~d~~g~~ 72 (181)
.....+|+++|.+|+|||||+|++++.... ....+ .+.+.....+ .+..+.++||||-.
T Consensus 35 ~~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~ 102 (592)
T 1f5n_A 35 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLG 102 (592)
T ss_dssp CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBC
T ss_pred cCCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcC
Confidence 456688999999999999999999987632 22222 2333222222 46789999999943
No 227
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.45 E-value=4.3e-07 Score=71.63 Aligned_cols=25 Identities=20% Similarity=0.344 Sum_probs=21.4
Q ss_pred EEEEEcCCCCChHHHHHhhhcCCcc
Q 030233 19 KLLMVGLDASGKTTILYKMKLGEIV 43 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~~~~~ 43 (181)
.++++|++|+|||||++.++|-..+
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~~P 71 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVALP 71 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC--
T ss_pred eEEEECCCCChHHHHHHHHhCCCCC
Confidence 5999999999999999999986533
No 228
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.30 E-value=6.4e-08 Score=68.53 Aligned_cols=94 Identities=10% Similarity=0.016 Sum_probs=59.3
Q ss_pred cCCChh-hHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCcc
Q 030233 68 VGGQNK-IRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELY 146 (181)
Q Consensus 68 ~~g~~~-~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~ 146 (181)
.|||.. ........+..+|+++.|+|+.++.+..... +. + . ++|.++|+||+|+.+....+...+.+.
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~--l~-l-----l-~k~~iivlNK~DL~~~~~~~~~~~~~~-- 72 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG--VD-F-----S-RKETIILLNKVDIADEKTTKKWVEFFK-- 72 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT--SC-C-----T-TSEEEEEEECGGGSCHHHHHHHHHHHH--
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH--HH-h-----c-CCCcEEEEECccCCCHHHHHHHHHHHH--
Confidence 466542 2345566778999999999998876543211 11 1 1 689999999999976322222222221
Q ss_pred ccCCccEEEEEeeccCCCCHHHHHHHHHhh
Q 030233 147 SLGQRRWSIQSCSAISGQGLYEGLDWLSNN 176 (181)
Q Consensus 147 ~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~ 176 (181)
..+.++ .+||.+|.|++++++.+.+.
T Consensus 73 ---~~g~~v-~iSa~~~~gi~~L~~~l~~~ 98 (262)
T 3cnl_A 73 ---KQGKRV-ITTHKGEPRKVLLKKLSFDR 98 (262)
T ss_dssp ---HTTCCE-EECCTTSCHHHHHHHHCCCT
T ss_pred ---HcCCeE-EEECCCCcCHHHHHHHHHHh
Confidence 123356 99999999999999887653
No 229
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.29 E-value=1.9e-07 Score=67.45 Aligned_cols=85 Identities=9% Similarity=0.027 Sum_probs=56.0
Q ss_pred hhccCCCEEEEEEECCCccc-HHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC----HHHHHhhhCccccCCccEE
Q 030233 80 HYFRDTLGLTFVVDSSDRER-ISEARNELHQILSDNELSNAALLVFANKQDLPNVMP----TAEVADKLELYSLGQRRWS 154 (181)
Q Consensus 80 ~~~~~~d~ii~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~----~~~~~~~~~~~~~~~~~~~ 154 (181)
....++|.+++|+|+.+|.. ...+..++.. ... .++|.++|+||+|+.+... .+.+.+.+ ...+.+
T Consensus 82 ~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~-~~~---~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y-----~~~g~~ 152 (307)
T 1t9h_A 82 PPICNVDQAVLVFSAVQPSFSTALLDRFLVL-VEA---NDIQPIICITKMDLIEDQDTEDTIQAYAEDY-----RNIGYD 152 (307)
T ss_dssp TTEECCCEEEEEEESTTTTCCHHHHHHHHHH-HHT---TTCEEEEEEECGGGCCCHHHHHHHHHHHHHH-----HHHTCC
T ss_pred HHHHhCCEEEEEEeCCCCCCCHHHHHHHHHH-HHH---CCCCEEEEEECCccCchhhhHHHHHHHHHHH-----HhCCCe
Confidence 36778999999999987643 3333333322 223 4789999999999986432 22333332 122346
Q ss_pred EEEeeccCCCCHHHHHHHH
Q 030233 155 IQSCSAISGQGLYEGLDWL 173 (181)
Q Consensus 155 ~~~~Sa~~~~~i~~l~~~i 173 (181)
++.+||.+|.|++++++..
T Consensus 153 v~~~sa~~~~g~~~L~~~~ 171 (307)
T 1t9h_A 153 VYLTSSKDQDSLADIIPHF 171 (307)
T ss_dssp EEECCHHHHTTCTTTGGGG
T ss_pred EEEEecCCCCCHHHHHhhc
Confidence 8999999999988876543
No 230
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=98.19 E-value=3e-07 Score=70.39 Aligned_cols=96 Identities=26% Similarity=0.296 Sum_probs=55.7
Q ss_pred CCCccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEE--EE--CCeEEEEEEcCCChh--hHHHH--------H
Q 030233 14 PQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAV--EY--KNKSFCVWDVGGQNK--IRALW--------R 79 (181)
Q Consensus 14 ~~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~i~d~~g~~~--~~~~~--------~ 79 (181)
...+..|+++|.+|+||||+.++++........++..+....+ .. ......+||..|.+. .+..+ .
T Consensus 36 ~~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~ 115 (469)
T 1bif_A 36 TNCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVR 115 (469)
T ss_dssp --CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3456789999999999999999997543211112211110000 00 113346789888632 23322 4
Q ss_pred hhccCCCEEEEEEECCCcccHHHHHHHHHHH
Q 030233 80 HYFRDTLGLTFVVDSSDRERISEARNELHQI 110 (181)
Q Consensus 80 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~ 110 (181)
.++....+.++|+|.++. +......|+..+
T Consensus 116 ~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~ 145 (469)
T 1bif_A 116 KFLSEEGGHVAVFDATNT-TRERRAMIFNFG 145 (469)
T ss_dssp HHHHTTCCSEEEEESCCC-SHHHHHHHHHHH
T ss_pred HHHHhCCCCEEEEeCCCC-CHHHHHHHHHHH
Confidence 566667888999999886 444444444443
No 231
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.09 E-value=5.4e-06 Score=59.71 Aligned_cols=108 Identities=20% Similarity=0.203 Sum_probs=61.5
Q ss_pred ccEEEEEcCCCCChHHHHHhhhc------CCc-----ccccC-----------ccceeEEE-----------------EE
Q 030233 17 RIKLLMVGLDASGKTTILYKMKL------GEI-----VTTTP-----------TIGFNVEA-----------------VE 57 (181)
Q Consensus 17 ~~~i~~~G~~~~GKssl~~~~~~------~~~-----~~~~~-----------~~~~~~~~-----------------~~ 57 (181)
.-.++++|.+|+||||++..+++ ... ....+ ..++.... ..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 34688999999999999998873 220 00000 00111000 00
Q ss_pred ECCeEEEEEEcCCChh--hHH-HHH-----hhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCe-EEEEEeCC
Q 030233 58 YKNKSFCVWDVGGQNK--IRA-LWR-----HYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAA-LLVFANKQ 128 (181)
Q Consensus 58 ~~~~~~~i~d~~g~~~--~~~-~~~-----~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~ 128 (181)
..+..+.++||||... ... ... .....+|.+++|+|+.... ........+.. ..+ ..+|+||.
T Consensus 178 ~~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~---~~~~~~~~~~~-----~~~i~gvVlnk~ 249 (297)
T 1j8m_F 178 SEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQ---KAYDLASKFNQ-----ASKIGTIIITKM 249 (297)
T ss_dssp HTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGG---GHHHHHHHHHH-----TCTTEEEEEECG
T ss_pred hCCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchH---HHHHHHHHHHh-----hCCCCEEEEeCC
Confidence 1456899999999665 321 111 1334689999999986432 22222222221 244 67889999
Q ss_pred CCCC
Q 030233 129 DLPN 132 (181)
Q Consensus 129 D~~~ 132 (181)
|...
T Consensus 250 D~~~ 253 (297)
T 1j8m_F 250 DGTA 253 (297)
T ss_dssp GGCT
T ss_pred CCCc
Confidence 9753
No 232
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.07 E-value=6.5e-06 Score=62.17 Aligned_cols=109 Identities=19% Similarity=0.218 Sum_probs=61.7
Q ss_pred ccEEEEEcCCCCChHHHHHhhhc------CCc-----cccc-----------CccceeEEEE-----------------E
Q 030233 17 RIKLLMVGLDASGKTTILYKMKL------GEI-----VTTT-----------PTIGFNVEAV-----------------E 57 (181)
Q Consensus 17 ~~~i~~~G~~~~GKssl~~~~~~------~~~-----~~~~-----------~~~~~~~~~~-----------------~ 57 (181)
...|+++|++|+||||++..++. ... ..+. ...+...... .
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a~ 176 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIFV 176 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHHH
Confidence 45689999999999999998873 221 0000 0111111100 0
Q ss_pred ECCeEEEEEEcCCChh------hHHHHHh--hccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCC
Q 030233 58 YKNKSFCVWDVGGQNK------IRALWRH--YFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQD 129 (181)
Q Consensus 58 ~~~~~~~i~d~~g~~~------~~~~~~~--~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D 129 (181)
..+..+.++||||... +...... .....+.+++|+|+............+... -.+..+++||.|
T Consensus 177 ~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~~f~~~-------~~~~gVIlTKlD 249 (433)
T 3kl4_A 177 KNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLASRFHQA-------SPIGSVIITKMD 249 (433)
T ss_dssp TTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHHHHHHH-------CSSEEEEEECGG
T ss_pred hcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHHHHhcc-------cCCcEEEEeccc
Confidence 1357889999999533 1111111 112468999999997543333333333321 235678999999
Q ss_pred CCC
Q 030233 130 LPN 132 (181)
Q Consensus 130 ~~~ 132 (181)
...
T Consensus 250 ~~a 252 (433)
T 3kl4_A 250 GTA 252 (433)
T ss_dssp GCS
T ss_pred ccc
Confidence 753
No 233
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.01 E-value=8.5e-06 Score=60.03 Aligned_cols=86 Identities=15% Similarity=0.073 Sum_probs=52.5
Q ss_pred hccCCCEEEEEEECCCccc-HHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEee
Q 030233 81 YFRDTLGLTFVVDSSDRER-ISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCS 159 (181)
Q Consensus 81 ~~~~~d~ii~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (181)
...++|.+++|.+. +|.. ...+..++... .. .++|.++|+||+|+.+....+.+...... +...+.+++.+|
T Consensus 127 i~anvD~v~iv~a~-~P~~~~~~i~r~L~~a-~~---~~~~~iivlNK~DL~~~~~~~~~~~~~~~--y~~~G~~v~~~S 199 (358)
T 2rcn_A 127 IAANIDQIVIVSAI-LPELSLNIIDRYLVGC-ET---LQVEPLIVLNKIDLLDDEGMDFVNEQMDI--YRNIGYRVLMVS 199 (358)
T ss_dssp EEECCCEEEEEEES-TTTCCHHHHHHHHHHH-HH---HTCEEEEEEECGGGCCHHHHHHHHHHHHH--HHTTTCCEEECB
T ss_pred HHhcCCEEEEEEeC-CCCCCHHHHHHHHHHH-Hh---cCCCEEEEEECccCCCchhHHHHHHHHHH--HHhCCCcEEEEe
Confidence 45788999988665 4543 33333333222 22 36888999999999863221112222211 123345699999
Q ss_pred ccCCCCHHHHHHHH
Q 030233 160 AISGQGLYEGLDWL 173 (181)
Q Consensus 160 a~~~~~i~~l~~~i 173 (181)
|.+|.|++++...+
T Consensus 200 a~~~~gl~~L~~~~ 213 (358)
T 2rcn_A 200 SHTQDGLKPLEEAL 213 (358)
T ss_dssp TTTTBTHHHHHHHH
T ss_pred cCCCcCHHHHHHhc
Confidence 99999999987654
No 234
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.78 E-value=2.6e-05 Score=59.13 Aligned_cols=25 Identities=16% Similarity=0.130 Sum_probs=21.8
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhc
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKL 39 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~ 39 (181)
.+-.-|.|+|++++|||+|+|++++
T Consensus 65 ~~v~vVsV~G~~~~GKStLLN~llg 89 (447)
T 3q5d_A 65 KEVVAVSVAGAFRKGKSFLMDFMLR 89 (447)
T ss_dssp SBEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHhh
Confidence 3445699999999999999999986
No 235
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.77 E-value=0.00019 Score=54.40 Aligned_cols=108 Identities=21% Similarity=0.252 Sum_probs=60.1
Q ss_pred ccEEEEEcCCCCChHHHHHhhh-------cCCcc-----cccC-----------ccceeEEE--------------E---
Q 030233 17 RIKLLMVGLDASGKTTILYKMK-------LGEIV-----TTTP-----------TIGFNVEA--------------V--- 56 (181)
Q Consensus 17 ~~~i~~~G~~~~GKssl~~~~~-------~~~~~-----~~~~-----------~~~~~~~~--------------~--- 56 (181)
...|+++|.+|+||||++..++ +.... .+.+ ..+..... +
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~~ 179 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEA 179 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHHH
Confidence 3468899999999999998887 32210 1110 00111000 0
Q ss_pred EECCeEEEEEEcCCChhhH-HHH-----HhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCe-EEEEEeCCC
Q 030233 57 EYKNKSFCVWDVGGQNKIR-ALW-----RHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAA-LLVFANKQD 129 (181)
Q Consensus 57 ~~~~~~~~i~d~~g~~~~~-~~~-----~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~D 129 (181)
...+..+.++||||..... ... ......++.+++|+|+......-. ....+-. ..+ .-+|+||.|
T Consensus 180 ~~~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~~~---~~~~f~~-----~l~i~gvVlnK~D 251 (433)
T 2xxa_A 180 KLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAAN---TAKAFNE-----ALPLTGVVLTKVD 251 (433)
T ss_dssp HHTTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTHHH---HHHHHHH-----HSCCCCEEEECTT
T ss_pred HhCCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHHHH---HHHHHhc-----cCCCeEEEEecCC
Confidence 0146789999999964321 111 122346899999999874332222 2222211 233 246899999
Q ss_pred CCC
Q 030233 130 LPN 132 (181)
Q Consensus 130 ~~~ 132 (181)
...
T Consensus 252 ~~~ 254 (433)
T 2xxa_A 252 GDA 254 (433)
T ss_dssp SSS
T ss_pred CCc
Confidence 754
No 236
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.72 E-value=1.8e-05 Score=52.63 Aligned_cols=23 Identities=30% Similarity=0.492 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCChHHHHHhhhcC
Q 030233 18 IKLLMVGLDASGKTTILYKMKLG 40 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~~ 40 (181)
.+++++|++|+|||||++.+++.
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999864
No 237
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.67 E-value=4.4e-05 Score=51.95 Aligned_cols=37 Identities=22% Similarity=0.258 Sum_probs=27.4
Q ss_pred hHHHHhhhhC--CCCccEEEEEcCCCCChHHHHHhhhcC
Q 030233 4 LISRLAKRFF--PQCRIKLLMVGLDASGKTTILYKMKLG 40 (181)
Q Consensus 4 ~~~~~~~~~~--~~~~~~i~~~G~~~~GKssl~~~~~~~ 40 (181)
+...+.++.. ..+...++++|++|+|||||++.+++.
T Consensus 7 ~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 7 LCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp HHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3444444433 345678999999999999999998764
No 238
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.61 E-value=3.8e-05 Score=51.07 Aligned_cols=23 Identities=17% Similarity=0.312 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCChHHHHHhhhcC
Q 030233 18 IKLLMVGLDASGKTTILYKMKLG 40 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~~ 40 (181)
-.++++|++|||||||++.+.+.
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 46899999999999999999864
No 239
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.56 E-value=3.7e-05 Score=51.97 Aligned_cols=21 Identities=29% Similarity=0.490 Sum_probs=19.5
Q ss_pred EEEEEcCCCCChHHHHHhhhc
Q 030233 19 KLLMVGLDASGKTTILYKMKL 39 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~ 39 (181)
.++++|++|+|||||++.+++
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999999976
No 240
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.50 E-value=8.7e-06 Score=58.80 Aligned_cols=24 Identities=17% Similarity=0.275 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCChHHHHHhhhcCC
Q 030233 18 IKLLMVGLDASGKTTILYKMKLGE 41 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~~~ 41 (181)
-.++++|++|+|||||+|.+++..
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC--
T ss_pred CEEEEECCCCCCHHHHHHHhcccc
Confidence 478999999999999999998765
No 241
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.50 E-value=5.2e-05 Score=51.26 Aligned_cols=23 Identities=13% Similarity=0.254 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCChHHHHHhhhcC
Q 030233 18 IKLLMVGLDASGKTTILYKMKLG 40 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~~ 40 (181)
--++++|++||||||+++.+++.
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 35899999999999999999874
No 242
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.49 E-value=5e-05 Score=50.74 Aligned_cols=22 Identities=27% Similarity=0.446 Sum_probs=19.7
Q ss_pred EEEEcCCCCChHHHHHhhhcCC
Q 030233 20 LLMVGLDASGKTTILYKMKLGE 41 (181)
Q Consensus 20 i~~~G~~~~GKssl~~~~~~~~ 41 (181)
++++|++|+||||+++.+++..
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHhhC
Confidence 6899999999999999998643
No 243
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.49 E-value=5.9e-05 Score=50.41 Aligned_cols=23 Identities=35% Similarity=0.293 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCChHHHHHhhhcC
Q 030233 18 IKLLMVGLDASGKTTILYKMKLG 40 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~~ 40 (181)
-.++++|++|+||||+++.+++.
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 46899999999999999999875
No 244
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.49 E-value=7.8e-05 Score=50.32 Aligned_cols=28 Identities=21% Similarity=0.358 Sum_probs=22.9
Q ss_pred CCCCccEEEEEcCCCCChHHHHHhhhcC
Q 030233 13 FPQCRIKLLMVGLDASGKTTILYKMKLG 40 (181)
Q Consensus 13 ~~~~~~~i~~~G~~~~GKssl~~~~~~~ 40 (181)
.+++.--++++|++|+|||||++.+++.
T Consensus 15 ~~~~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 15 YFQGRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp -CCSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCCCEEEEECcCCCCHHHHHHHHHhh
Confidence 3445557899999999999999999864
No 245
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.48 E-value=5.5e-05 Score=51.43 Aligned_cols=23 Identities=22% Similarity=0.335 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChHHHHHhhhcCC
Q 030233 19 KLLMVGLDASGKTTILYKMKLGE 41 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~~~ 41 (181)
-++++|++|+|||||++.+++-.
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 47999999999999999998743
No 246
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.46 E-value=7e-05 Score=49.65 Aligned_cols=27 Identities=22% Similarity=0.133 Sum_probs=22.3
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhcCC
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKLGE 41 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~~~ 41 (181)
...-.++++|++|+|||||++.+++.-
T Consensus 36 ~~g~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 36 EEGKGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp GGCCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 334568999999999999999987643
No 247
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.45 E-value=6.5e-05 Score=51.65 Aligned_cols=24 Identities=8% Similarity=0.231 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCChHHHHHhhhcCC
Q 030233 18 IKLLMVGLDASGKTTILYKMKLGE 41 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~~~ 41 (181)
--++++|++|+|||||++.+++..
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 357999999999999999998754
No 248
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.44 E-value=6.5e-05 Score=51.58 Aligned_cols=24 Identities=25% Similarity=0.310 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCChHHHHHhhhcCC
Q 030233 18 IKLLMVGLDASGKTTILYKMKLGE 41 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~~~ 41 (181)
-.++++|++|+|||||++.+++-.
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 357999999999999999998743
No 249
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=97.44 E-value=0.00093 Score=44.98 Aligned_cols=69 Identities=10% Similarity=-0.008 Sum_probs=46.9
Q ss_pred CCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCC-CCCCCeEEEEEeCCCCC
Q 030233 59 KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDN-ELSNAALLVFANKQDLP 131 (181)
Q Consensus 59 ~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~nK~D~~ 131 (181)
....+.++|+|+.. .......+..+|.+++++..+. .+ ......+..+.... ..++.++.+|+|+.|..
T Consensus 74 ~~yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~ 143 (206)
T 4dzz_A 74 ADYDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSP-LD-FSAAGSVVTVLEAQAYSRKVEARFLITRKIEM 143 (206)
T ss_dssp TTSSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCT-TT-HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTT
T ss_pred CCCCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCH-HH-HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCC
Confidence 35789999999865 2334456667999999998864 34 55555555554322 12457889999999954
No 250
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.44 E-value=6.9e-05 Score=49.41 Aligned_cols=21 Identities=29% Similarity=0.368 Sum_probs=18.2
Q ss_pred EEEEEcCCCCChHHHHHhhhc
Q 030233 19 KLLMVGLDASGKTTILYKMKL 39 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~ 39 (181)
-++++|++|||||||++.+.+
T Consensus 11 i~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHcc
Confidence 479999999999999997553
No 251
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.43 E-value=9.2e-05 Score=51.70 Aligned_cols=23 Identities=22% Similarity=0.401 Sum_probs=21.0
Q ss_pred CccEEEEEcCCCCChHHHHHhhh
Q 030233 16 CRIKLLMVGLDASGKTTILYKMK 38 (181)
Q Consensus 16 ~~~~i~~~G~~~~GKssl~~~~~ 38 (181)
+...|+++|++||||||+++.++
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 45679999999999999999998
No 252
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.42 E-value=0.00011 Score=49.04 Aligned_cols=33 Identities=30% Similarity=0.257 Sum_probs=24.3
Q ss_pred HhhhhCCCCccEEEEEcCCCCChHHHHHhhhcC
Q 030233 8 LAKRFFPQCRIKLLMVGLDASGKTTILYKMKLG 40 (181)
Q Consensus 8 ~~~~~~~~~~~~i~~~G~~~~GKssl~~~~~~~ 40 (181)
+.+....++...|++.|.+|+||||+++.+...
T Consensus 4 ~~~~~~~~~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 4 LTTYKCIEKGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp ----CCCSCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cccccccCCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 334445566778999999999999999988653
No 253
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.42 E-value=0.0001 Score=53.16 Aligned_cols=24 Identities=29% Similarity=0.548 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCChHHHHHhhhcCCc
Q 030233 18 IKLLMVGLDASGKTTILYKMKLGEI 42 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~~~~ 42 (181)
-.++++|++|+|||||+|.+. ...
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~-~~~ 189 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT-GEE 189 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH-SCC
T ss_pred cEEEEECCCCCCHHHHHHHHH-Hhh
Confidence 467999999999999999998 543
No 254
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.41 E-value=7.9e-05 Score=51.78 Aligned_cols=24 Identities=25% Similarity=0.292 Sum_probs=21.0
Q ss_pred EEEEEcCCCCChHHHHHhhhcCCc
Q 030233 19 KLLMVGLDASGKTTILYKMKLGEI 42 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~~~~ 42 (181)
.++++|++|||||||++.+++-..
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl~~ 56 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCLDK 56 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Confidence 579999999999999999987543
No 255
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.39 E-value=9.3e-05 Score=50.31 Aligned_cols=25 Identities=28% Similarity=0.226 Sum_probs=21.5
Q ss_pred CccEEEEEcCCCCChHHHHHhhhcC
Q 030233 16 CRIKLLMVGLDASGKTTILYKMKLG 40 (181)
Q Consensus 16 ~~~~i~~~G~~~~GKssl~~~~~~~ 40 (181)
+...++++|++|||||||++.+.+.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999998763
No 256
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.38 E-value=0.00014 Score=48.43 Aligned_cols=29 Identities=21% Similarity=0.292 Sum_probs=23.9
Q ss_pred hCCCCccEEEEEcCCCCChHHHHHhhhcC
Q 030233 12 FFPQCRIKLLMVGLDASGKTTILYKMKLG 40 (181)
Q Consensus 12 ~~~~~~~~i~~~G~~~~GKssl~~~~~~~ 40 (181)
+.+++...|+++|.+||||||+.+.+...
T Consensus 5 ~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 5 MEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp -CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 34455678999999999999999999765
No 257
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.37 E-value=9.7e-05 Score=50.95 Aligned_cols=23 Identities=35% Similarity=0.593 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChHHHHHhhhcCC
Q 030233 19 KLLMVGLDASGKTTILYKMKLGE 41 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~~~ 41 (181)
.++++|++|+|||||++.++|-.
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998754
No 258
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.37 E-value=9.6e-05 Score=48.13 Aligned_cols=25 Identities=32% Similarity=0.301 Sum_probs=21.7
Q ss_pred ccEEEEEcCCCCChHHHHHhhhcCC
Q 030233 17 RIKLLMVGLDASGKTTILYKMKLGE 41 (181)
Q Consensus 17 ~~~i~~~G~~~~GKssl~~~~~~~~ 41 (181)
.-.++++|+.|+|||||++.+++.-
T Consensus 33 Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 33 AIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 3458999999999999999998865
No 259
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.33 E-value=0.00012 Score=51.07 Aligned_cols=23 Identities=17% Similarity=0.169 Sum_probs=20.7
Q ss_pred EEEEEcCCCCChHHHHHhhhcCC
Q 030233 19 KLLMVGLDASGKTTILYKMKLGE 41 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~~~ 41 (181)
.++++|++|+|||||++.++|-.
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999998754
No 260
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.33 E-value=0.00015 Score=49.27 Aligned_cols=25 Identities=16% Similarity=0.205 Sum_probs=21.6
Q ss_pred ccEEEEEcCCCCChHHHHHhhhcCC
Q 030233 17 RIKLLMVGLDASGKTTILYKMKLGE 41 (181)
Q Consensus 17 ~~~i~~~G~~~~GKssl~~~~~~~~ 41 (181)
.--|+++|++|+||||+++.+++..
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 4468999999999999999998754
No 261
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.33 E-value=8.4e-05 Score=49.72 Aligned_cols=21 Identities=29% Similarity=0.510 Sum_probs=19.1
Q ss_pred EEEEcCCCCChHHHHHhhhcC
Q 030233 20 LLMVGLDASGKTTILYKMKLG 40 (181)
Q Consensus 20 i~~~G~~~~GKssl~~~~~~~ 40 (181)
|+++||+|+|||||+++++..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999999754
No 262
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.32 E-value=0.00012 Score=48.04 Aligned_cols=23 Identities=26% Similarity=0.366 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCChHHHHHhhhcC
Q 030233 18 IKLLMVGLDASGKTTILYKMKLG 40 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~~ 40 (181)
..|+++|++||||||+.+.+.+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999764
No 263
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.31 E-value=0.00015 Score=48.98 Aligned_cols=25 Identities=16% Similarity=0.256 Sum_probs=21.7
Q ss_pred ccEEEEEcCCCCChHHHHHhhhcCC
Q 030233 17 RIKLLMVGLDASGKTTILYKMKLGE 41 (181)
Q Consensus 17 ~~~i~~~G~~~~GKssl~~~~~~~~ 41 (181)
...++++|++||||||+++.+.+..
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4568999999999999999998754
No 264
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.31 E-value=0.00012 Score=52.00 Aligned_cols=23 Identities=17% Similarity=0.182 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChHHHHHhhhcCC
Q 030233 19 KLLMVGLDASGKTTILYKMKLGE 41 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~~~ 41 (181)
.++++|++|+|||||++.++|-.
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 57999999999999999998754
No 265
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.31 E-value=0.00014 Score=53.65 Aligned_cols=25 Identities=16% Similarity=0.155 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCChHHHHHhhhcCCc
Q 030233 18 IKLLMVGLDASGKTTILYKMKLGEI 42 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~~~~ 42 (181)
-.++++|++|+|||||+|.+++...
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CEEEEECCCCccHHHHHHHHhcccc
Confidence 3689999999999999999998654
No 266
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.31 E-value=0.00013 Score=51.60 Aligned_cols=23 Identities=30% Similarity=0.450 Sum_probs=20.7
Q ss_pred EEEEEcCCCCChHHHHHhhhcCC
Q 030233 19 KLLMVGLDASGKTTILYKMKLGE 41 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~~~ 41 (181)
.++++|++|+|||||++.++|-.
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998754
No 267
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.30 E-value=0.00014 Score=49.86 Aligned_cols=23 Identities=26% Similarity=0.234 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChHHHHHhhhcCC
Q 030233 19 KLLMVGLDASGKTTILYKMKLGE 41 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~~~ 41 (181)
.++++|++|+|||||++.++|-.
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998764
No 268
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.29 E-value=0.00015 Score=50.45 Aligned_cols=24 Identities=21% Similarity=0.230 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChHHHHHhhhcCCc
Q 030233 19 KLLMVGLDASGKTTILYKMKLGEI 42 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~~~~ 42 (181)
.++++|++|+|||||++.+++-..
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAEMD 56 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCSE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 579999999999999999987643
No 269
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.29 E-value=0.00016 Score=48.77 Aligned_cols=24 Identities=29% Similarity=0.346 Sum_probs=20.9
Q ss_pred CccEEEEEcCCCCChHHHHHhhhc
Q 030233 16 CRIKLLMVGLDASGKTTILYKMKL 39 (181)
Q Consensus 16 ~~~~i~~~G~~~~GKssl~~~~~~ 39 (181)
....++++|++||||||+++.+++
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999875
No 270
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.28 E-value=0.00014 Score=51.45 Aligned_cols=23 Identities=22% Similarity=0.310 Sum_probs=20.7
Q ss_pred EEEEEcCCCCChHHHHHhhhcCC
Q 030233 19 KLLMVGLDASGKTTILYKMKLGE 41 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~~~ 41 (181)
.++++|++|+|||||++.++|-.
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 57999999999999999998754
No 271
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.27 E-value=0.00014 Score=51.20 Aligned_cols=23 Identities=26% Similarity=0.325 Sum_probs=20.7
Q ss_pred EEEEEcCCCCChHHHHHhhhcCC
Q 030233 19 KLLMVGLDASGKTTILYKMKLGE 41 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~~~ 41 (181)
.++++|++|+|||||++.++|-.
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999998754
No 272
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.27 E-value=0.00017 Score=47.18 Aligned_cols=20 Identities=25% Similarity=0.443 Sum_probs=18.6
Q ss_pred cEEEEEcCCCCChHHHHHhh
Q 030233 18 IKLLMVGLDASGKTTILYKM 37 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~ 37 (181)
+.|++.|++||||||+.+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999999
No 273
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.27 E-value=0.00032 Score=46.37 Aligned_cols=34 Identities=18% Similarity=0.247 Sum_probs=25.0
Q ss_pred HHhhhhCCCCccEEEEEcCCCCChHHHHHhhhcC
Q 030233 7 RLAKRFFPQCRIKLLMVGLDASGKTTILYKMKLG 40 (181)
Q Consensus 7 ~~~~~~~~~~~~~i~~~G~~~~GKssl~~~~~~~ 40 (181)
.+.+.......-.+++.|++|+|||++++.++..
T Consensus 33 ~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 33 RTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp HHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHH
Confidence 3333333344567899999999999999988754
No 274
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.27 E-value=0.00018 Score=47.88 Aligned_cols=23 Identities=17% Similarity=0.101 Sum_probs=20.3
Q ss_pred ccEEEEEcCCCCChHHHHHhhhc
Q 030233 17 RIKLLMVGLDASGKTTILYKMKL 39 (181)
Q Consensus 17 ~~~i~~~G~~~~GKssl~~~~~~ 39 (181)
...|++.|++||||||+++.+..
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999864
No 275
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.26 E-value=0.00017 Score=50.37 Aligned_cols=23 Identities=22% Similarity=0.242 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChHHHHHhhhcCC
Q 030233 19 KLLMVGLDASGKTTILYKMKLGE 41 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~~~ 41 (181)
.++++|++|+|||||++.+++-.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998754
No 276
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.26 E-value=0.00017 Score=50.55 Aligned_cols=23 Identities=26% Similarity=0.222 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChHHHHHhhhcCC
Q 030233 19 KLLMVGLDASGKTTILYKMKLGE 41 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~~~ 41 (181)
.++++|++|+|||||++.+++-.
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999998754
No 277
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.26 E-value=0.00015 Score=50.10 Aligned_cols=23 Identities=26% Similarity=0.300 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChHHHHHhhhcCC
Q 030233 19 KLLMVGLDASGKTTILYKMKLGE 41 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~~~ 41 (181)
.++++|++|+|||||++.+++-.
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999998764
No 278
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.26 E-value=0.00016 Score=48.96 Aligned_cols=23 Identities=26% Similarity=0.335 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCChHHHHHhhhcC
Q 030233 18 IKLLMVGLDASGKTTILYKMKLG 40 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~~ 40 (181)
..|+++|++||||||+++.+...
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 45899999999999999999754
No 279
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.25 E-value=0.00016 Score=51.13 Aligned_cols=23 Identities=35% Similarity=0.509 Sum_probs=20.7
Q ss_pred EEEEEcCCCCChHHHHHhhhcCC
Q 030233 19 KLLMVGLDASGKTTILYKMKLGE 41 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~~~ 41 (181)
.++++|++|+|||||++.+++-.
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Confidence 57999999999999999998754
No 280
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.25 E-value=0.00015 Score=48.39 Aligned_cols=21 Identities=19% Similarity=0.322 Sum_probs=19.2
Q ss_pred EEEEEcCCCCChHHHHHhhhc
Q 030233 19 KLLMVGLDASGKTTILYKMKL 39 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~ 39 (181)
.++++|++|+||||+++.+++
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999975
No 281
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.25 E-value=0.00027 Score=53.27 Aligned_cols=22 Identities=45% Similarity=0.564 Sum_probs=19.1
Q ss_pred cEEEEEcCCCCChHHHHHhhhc
Q 030233 18 IKLLMVGLDASGKTTILYKMKL 39 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~ 39 (181)
-.++++|++|+||||++..+++
T Consensus 99 ~vi~i~G~~GsGKTT~~~~LA~ 120 (425)
T 2ffh_A 99 NLWFLVGLQGSGKTTTAAKLAL 120 (425)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3588899999999999988864
No 282
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.24 E-value=0.00016 Score=50.37 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChHHHHHhhhcCC
Q 030233 19 KLLMVGLDASGKTTILYKMKLGE 41 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~~~ 41 (181)
.++++|++|+|||||++.++|-.
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999998754
No 283
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.24 E-value=0.0002 Score=47.85 Aligned_cols=24 Identities=17% Similarity=0.196 Sum_probs=20.4
Q ss_pred CccEEEEEcCCCCChHHHHHhhhc
Q 030233 16 CRIKLLMVGLDASGKTTILYKMKL 39 (181)
Q Consensus 16 ~~~~i~~~G~~~~GKssl~~~~~~ 39 (181)
+...|++.|.+||||||+.+.++.
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356799999999999999998864
No 284
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.24 E-value=0.00017 Score=50.80 Aligned_cols=23 Identities=26% Similarity=0.262 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChHHHHHhhhcCC
Q 030233 19 KLLMVGLDASGKTTILYKMKLGE 41 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~~~ 41 (181)
.++++|++|+|||||++.++|-.
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999998754
No 285
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.24 E-value=0.00017 Score=50.57 Aligned_cols=24 Identities=33% Similarity=0.411 Sum_probs=21.1
Q ss_pred EEEEEcCCCCChHHHHHhhhcCCc
Q 030233 19 KLLMVGLDASGKTTILYKMKLGEI 42 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~~~~ 42 (181)
.++++|++|+|||||++.++|-..
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 579999999999999999987643
No 286
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.24 E-value=0.00015 Score=48.64 Aligned_cols=22 Identities=27% Similarity=0.380 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChHHHHHhhhcC
Q 030233 19 KLLMVGLDASGKTTILYKMKLG 40 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~~ 40 (181)
.++++|++|+|||||++.+++.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 4799999999999999999864
No 287
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=97.23 E-value=0.0042 Score=44.64 Aligned_cols=69 Identities=12% Similarity=0.118 Sum_probs=46.2
Q ss_pred CeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEE-EEEeCCCC
Q 030233 60 NKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALL-VFANKQDL 130 (181)
Q Consensus 60 ~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii-lv~nK~D~ 130 (181)
...+.++|+|+..... .....+..+|.+++|...+ ..++......+..+.......+.+++ +|+|+.+.
T Consensus 156 ~yD~ViiD~p~~~~~~-~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~ 225 (307)
T 3end_A 156 DTDVVIFDVLGDVVCG-GFAAPLQHADQAVVVTAND-FDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRA 225 (307)
T ss_dssp SCSEEEEEECCSSCCG-GGGGGGGTCSEEEEEECSS-HHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSC
T ss_pred cCCEEEEeCCCccchH-HHHHHHHHCCEEEEEecCc-HHHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCc
Confidence 4688999998743311 1224567799999999865 55666666666666543333566766 89999984
No 288
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.23 E-value=0.00013 Score=49.69 Aligned_cols=22 Identities=23% Similarity=0.261 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChHHHHHhhhcC
Q 030233 19 KLLMVGLDASGKTTILYKMKLG 40 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~~ 40 (181)
.++++|++|+|||||++.+++-
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5799999999999999999886
No 289
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.23 E-value=0.00024 Score=48.04 Aligned_cols=25 Identities=36% Similarity=0.445 Sum_probs=21.8
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhc
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKL 39 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~ 39 (181)
.....++++|++|+||||+++.+.+
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4557799999999999999998875
No 290
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.22 E-value=0.0002 Score=51.62 Aligned_cols=26 Identities=27% Similarity=0.382 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCChHHHHHhhhcCCcc
Q 030233 18 IKLLMVGLDASGKTTILYKMKLGEIV 43 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~~~~~ 43 (181)
-.++++|++|+|||||+|.+.+...+
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~~~~ 195 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPGLKL 195 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTCCC
T ss_pred CeEEEECCCCCcHHHHHHHhcccccc
Confidence 36799999999999999999886543
No 291
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.22 E-value=0.00024 Score=46.78 Aligned_cols=23 Identities=17% Similarity=0.385 Sum_probs=20.2
Q ss_pred ccEEEEEcCCCCChHHHHHhhhc
Q 030233 17 RIKLLMVGLDASGKTTILYKMKL 39 (181)
Q Consensus 17 ~~~i~~~G~~~~GKssl~~~~~~ 39 (181)
...++++|++|+||||+++.+.+
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 45689999999999999998865
No 292
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.22 E-value=0.00022 Score=47.03 Aligned_cols=22 Identities=27% Similarity=0.315 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCChHHHHHhhhc
Q 030233 18 IKLLMVGLDASGKTTILYKMKL 39 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~ 39 (181)
..|++.|.+||||||+.+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4589999999999999999986
No 293
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.22 E-value=0.00018 Score=50.45 Aligned_cols=22 Identities=18% Similarity=0.211 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChHHHHHhhhcC
Q 030233 19 KLLMVGLDASGKTTILYKMKLG 40 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~~ 40 (181)
.++++|++|+|||||++.++|-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5799999999999999999985
No 294
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.21 E-value=0.00025 Score=46.71 Aligned_cols=22 Identities=18% Similarity=0.318 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCChHHHHHhhhc
Q 030233 18 IKLLMVGLDASGKTTILYKMKL 39 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~ 39 (181)
..|++.|.+||||||+.+.+..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999976
No 295
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.21 E-value=0.00019 Score=50.85 Aligned_cols=22 Identities=23% Similarity=0.273 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChHHHHHhhhcC
Q 030233 19 KLLMVGLDASGKTTILYKMKLG 40 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~~ 40 (181)
.++++|++|+|||||++.++|-
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5799999999999999999985
No 296
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.21 E-value=0.0002 Score=50.47 Aligned_cols=23 Identities=30% Similarity=0.205 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChHHHHHhhhcCC
Q 030233 19 KLLMVGLDASGKTTILYKMKLGE 41 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~~~ 41 (181)
.++++|++|+|||||++.+++-.
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 58999999999999999998753
No 297
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.20 E-value=0.00017 Score=50.87 Aligned_cols=23 Identities=30% Similarity=0.247 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCChHHHHHhhhcC
Q 030233 18 IKLLMVGLDASGKTTILYKMKLG 40 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~~ 40 (181)
=.++++|++||||||+++.+++-
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHHHh
Confidence 36899999999999999999864
No 298
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.20 E-value=0.00021 Score=48.68 Aligned_cols=22 Identities=23% Similarity=0.430 Sum_probs=19.6
Q ss_pred cEEEEEcCCCCChHHHHHhhhc
Q 030233 18 IKLLMVGLDASGKTTILYKMKL 39 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~ 39 (181)
++|++.|++||||||+.+.++.
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999854
No 299
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.20 E-value=0.00033 Score=50.90 Aligned_cols=26 Identities=27% Similarity=0.281 Sum_probs=22.1
Q ss_pred CCCccEEEEEcCCCCChHHHHHhhhc
Q 030233 14 PQCRIKLLMVGLDASGKTTILYKMKL 39 (181)
Q Consensus 14 ~~~~~~i~~~G~~~~GKssl~~~~~~ 39 (181)
...++-|+++|++|||||||++.+.+
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999999988854
No 300
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.20 E-value=0.00037 Score=50.52 Aligned_cols=27 Identities=19% Similarity=0.091 Sum_probs=22.9
Q ss_pred CCCccEEEEEcCCCCChHHHHHhhhcC
Q 030233 14 PQCRIKLLMVGLDASGKTTILYKMKLG 40 (181)
Q Consensus 14 ~~~~~~i~~~G~~~~GKssl~~~~~~~ 40 (181)
..+..-++++|++|||||||++.+++-
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhh
Confidence 345677999999999999999998763
No 301
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.20 E-value=0.00019 Score=51.00 Aligned_cols=23 Identities=26% Similarity=0.245 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChHHHHHhhhcCC
Q 030233 19 KLLMVGLDASGKTTILYKMKLGE 41 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~~~ 41 (181)
.++++|++|+|||||++.+++-.
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999998754
No 302
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=97.20 E-value=0.00021 Score=50.91 Aligned_cols=23 Identities=39% Similarity=0.602 Sum_probs=20.7
Q ss_pred EEEEEcCCCCChHHHHHhhhcCC
Q 030233 19 KLLMVGLDASGKTTILYKMKLGE 41 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~~~ 41 (181)
.++++|++|+|||||++.++|-.
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 57999999999999999998754
No 303
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.20 E-value=0.00022 Score=46.66 Aligned_cols=21 Identities=24% Similarity=0.314 Sum_probs=19.2
Q ss_pred EEEEEcCCCCChHHHHHhhhc
Q 030233 19 KLLMVGLDASGKTTILYKMKL 39 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~ 39 (181)
.|++.|++||||||+.+.+..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999864
No 304
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.20 E-value=0.00021 Score=49.04 Aligned_cols=23 Identities=22% Similarity=0.200 Sum_probs=20.7
Q ss_pred ccEEEEEcCCCCChHHHHHhhhc
Q 030233 17 RIKLLMVGLDASGKTTILYKMKL 39 (181)
Q Consensus 17 ~~~i~~~G~~~~GKssl~~~~~~ 39 (181)
...|+++|++||||||+.+.+.+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999875
No 305
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.19 E-value=0.0003 Score=47.41 Aligned_cols=26 Identities=23% Similarity=0.378 Sum_probs=22.5
Q ss_pred CCCccEEEEEcCCCCChHHHHHhhhc
Q 030233 14 PQCRIKLLMVGLDASGKTTILYKMKL 39 (181)
Q Consensus 14 ~~~~~~i~~~G~~~~GKssl~~~~~~ 39 (181)
+...+.|++.|.+||||||+.+.+..
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 45567899999999999999998864
No 306
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.19 E-value=0.00016 Score=47.90 Aligned_cols=26 Identities=19% Similarity=0.129 Sum_probs=16.7
Q ss_pred CCCccEEEEEcCCCCChHHHHHhhhc
Q 030233 14 PQCRIKLLMVGLDASGKTTILYKMKL 39 (181)
Q Consensus 14 ~~~~~~i~~~G~~~~GKssl~~~~~~ 39 (181)
|++...|++.|.+||||||+.+.+..
T Consensus 2 ~~~~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 2 PMRSPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp ---CCEEEEECCC----CHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34556799999999999999999864
No 307
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.18 E-value=0.0002 Score=50.30 Aligned_cols=24 Identities=25% Similarity=0.243 Sum_probs=21.1
Q ss_pred EEEEEcCCCCChHHHHHhhhcCCc
Q 030233 19 KLLMVGLDASGKTTILYKMKLGEI 42 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~~~~ 42 (181)
.++++|++|+|||||++.++|-..
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIHR 56 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 579999999999999999987643
No 308
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.18 E-value=0.00026 Score=46.99 Aligned_cols=24 Identities=17% Similarity=0.274 Sum_probs=20.9
Q ss_pred CccEEEEEcCCCCChHHHHHhhhc
Q 030233 16 CRIKLLMVGLDASGKTTILYKMKL 39 (181)
Q Consensus 16 ~~~~i~~~G~~~~GKssl~~~~~~ 39 (181)
+...|++.|.+||||||+.+.++.
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999874
No 309
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.18 E-value=0.00021 Score=48.21 Aligned_cols=22 Identities=18% Similarity=0.249 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCChHHHHHhhhc
Q 030233 18 IKLLMVGLDASGKTTILYKMKL 39 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~ 39 (181)
.+|+++|++||||||+.+.+.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3689999999999999999976
No 310
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.18 E-value=0.0002 Score=50.66 Aligned_cols=23 Identities=35% Similarity=0.287 Sum_probs=20.7
Q ss_pred EEEEEcCCCCChHHHHHhhhcCC
Q 030233 19 KLLMVGLDASGKTTILYKMKLGE 41 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~~~ 41 (181)
.++++|++|+|||||++.++|-.
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 57999999999999999998754
No 311
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.18 E-value=0.00023 Score=48.51 Aligned_cols=22 Identities=27% Similarity=0.424 Sum_probs=19.6
Q ss_pred cEEEEEcCCCCChHHHHHhhhc
Q 030233 18 IKLLMVGLDASGKTTILYKMKL 39 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~ 39 (181)
++|++.|++||||||+.+.++.
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999864
No 312
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.17 E-value=0.00023 Score=48.06 Aligned_cols=23 Identities=17% Similarity=0.317 Sum_probs=20.3
Q ss_pred ccEEEEEcCCCCChHHHHHhhhc
Q 030233 17 RIKLLMVGLDASGKTTILYKMKL 39 (181)
Q Consensus 17 ~~~i~~~G~~~~GKssl~~~~~~ 39 (181)
...|+++|.+||||||+++.+..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998865
No 313
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.16 E-value=0.00029 Score=47.71 Aligned_cols=24 Identities=25% Similarity=0.321 Sum_probs=21.1
Q ss_pred CccEEEEEcCCCCChHHHHHhhhc
Q 030233 16 CRIKLLMVGLDASGKTTILYKMKL 39 (181)
Q Consensus 16 ~~~~i~~~G~~~~GKssl~~~~~~ 39 (181)
+...|++.|.+||||||+++.+..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 356799999999999999999865
No 314
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.16 E-value=0.00021 Score=51.50 Aligned_cols=23 Identities=17% Similarity=0.275 Sum_probs=20.2
Q ss_pred ccEEEEEcCCCCChHHHHHhhhc
Q 030233 17 RIKLLMVGLDASGKTTILYKMKL 39 (181)
Q Consensus 17 ~~~i~~~G~~~~GKssl~~~~~~ 39 (181)
.=.++++|++|+|||||++.+++
T Consensus 126 Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 126 KNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhh
Confidence 34689999999999999999875
No 315
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.16 E-value=0.00028 Score=47.60 Aligned_cols=26 Identities=27% Similarity=0.342 Sum_probs=22.1
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhcC
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKLG 40 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~~ 40 (181)
.+...|+++|++|+||||+++.+.+.
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 44567999999999999999988754
No 316
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.15 E-value=0.00028 Score=47.75 Aligned_cols=22 Identities=32% Similarity=0.158 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCChHHHHHhhhc
Q 030233 18 IKLLMVGLDASGKTTILYKMKL 39 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~ 39 (181)
+.|+++|++||||||+.+.+.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999976
No 317
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=97.14 E-value=0.00027 Score=49.91 Aligned_cols=23 Identities=35% Similarity=0.460 Sum_probs=21.0
Q ss_pred EEEEEcCCCCChHHHHHhhhcCC
Q 030233 19 KLLMVGLDASGKTTILYKMKLGE 41 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~~~ 41 (181)
.++++|++|+|||||++.+++-.
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999998865
No 318
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.13 E-value=0.00032 Score=47.18 Aligned_cols=27 Identities=22% Similarity=0.196 Sum_probs=23.0
Q ss_pred CCCccEEEEEcCCCCChHHHHHhhhcC
Q 030233 14 PQCRIKLLMVGLDASGKTTILYKMKLG 40 (181)
Q Consensus 14 ~~~~~~i~~~G~~~~GKssl~~~~~~~ 40 (181)
+++...|++.|.+||||||+.+.+...
T Consensus 5 ~~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 5 AKHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp -CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHC
Confidence 456678999999999999999999764
No 319
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.13 E-value=0.00029 Score=49.14 Aligned_cols=25 Identities=28% Similarity=0.199 Sum_probs=21.7
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhc
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKL 39 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~ 39 (181)
.+...|+++|++||||||+++.+++
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999999876
No 320
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.13 E-value=0.00029 Score=47.91 Aligned_cols=22 Identities=23% Similarity=0.362 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCChHHHHHhhhc
Q 030233 18 IKLLMVGLDASGKTTILYKMKL 39 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~ 39 (181)
+.|+++|+|||||+|...+++.
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999875
No 321
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.12 E-value=0.00028 Score=47.47 Aligned_cols=21 Identities=29% Similarity=0.423 Sum_probs=19.3
Q ss_pred EEEEEcCCCCChHHHHHhhhc
Q 030233 19 KLLMVGLDASGKTTILYKMKL 39 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~ 39 (181)
.|++.|.+||||||+++.+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999999875
No 322
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.12 E-value=0.00028 Score=47.55 Aligned_cols=22 Identities=23% Similarity=0.430 Sum_probs=19.9
Q ss_pred cEEEEEcCCCCChHHHHHhhhc
Q 030233 18 IKLLMVGLDASGKTTILYKMKL 39 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~ 39 (181)
-.|+++|++||||||+.+.++.
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4799999999999999999874
No 323
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.11 E-value=0.00015 Score=50.07 Aligned_cols=23 Identities=26% Similarity=0.348 Sum_probs=15.5
Q ss_pred cEEEEEcCCCCChHHHHHhhh-cC
Q 030233 18 IKLLMVGLDASGKTTILYKMK-LG 40 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~-~~ 40 (181)
--++++|++|+||||+++.++ +.
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC--
T ss_pred CEEEEECCCCCCHHHHHHHHHhcC
Confidence 468999999999999999998 64
No 324
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.11 E-value=0.00027 Score=46.75 Aligned_cols=107 Identities=11% Similarity=0.090 Sum_probs=47.7
Q ss_pred cEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEECCeEEEEEEcCCChhhHHHHHhh----ccCCCEEEEEEE
Q 030233 18 IKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHY----FRDTLGLTFVVD 93 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~----~~~~d~ii~v~d 93 (181)
..++++|++|+|||||++++++.-. . .+.....+......+. +|.+|.+.++.....+ ........++.+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~-~----~g~~v~~i~~~~~~~~-id~~g~Ds~~~~~~G~~~v~i~~~~~~~~~~~ 80 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALC-A----RGIRPGLIKHTHHDMD-VDKPGKDSYELRKAGAAQTIVASQQRWALMTE 80 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH-H----TTCCEEEEEECCC-------------CHHHHTCSEEEEECSSEEEEEEE
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhcc-c----cCCceeEEeeCCCccc-cCCCCCceEEEEeCCcceeecccchhheeeee
Confidence 4589999999999999999986421 1 1222233444333332 3556644332211111 011122222333
Q ss_pred C--CCcccHHHHHHHHHHH------HcCCCCCCCeEEEEEeCCCC
Q 030233 94 S--SDRERISEARNELHQI------LSDNELSNAALLVFANKQDL 130 (181)
Q Consensus 94 ~--~~~~s~~~~~~~~~~~------~~~~~~~~~piilv~nK~D~ 130 (181)
. ..+..+..+...+... ++.......|.+++++|.+.
T Consensus 81 ~~~~~~~~L~~ll~r~~~~~~D~ilIEg~k~~~~pki~v~~~~~~ 125 (174)
T 1np6_A 81 TPDEEELDLQFLASRMDTSKLDLILVEGFKHEEIAKIVLFRDGAG 125 (174)
T ss_dssp CSSSCCCCHHHHHHHSCGGGCSEEEEESCSSCCSEEEEEECTTSS
T ss_pred ccCCchhhHHHHHHhcCCCcchHHHHHHHhhcCCCEEEEEecccC
Confidence 1 1224455544332211 11222346899999999874
No 325
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.11 E-value=0.00032 Score=46.57 Aligned_cols=23 Identities=22% Similarity=0.411 Sum_probs=20.2
Q ss_pred ccEEEEEcCCCCChHHHHHhhhc
Q 030233 17 RIKLLMVGLDASGKTTILYKMKL 39 (181)
Q Consensus 17 ~~~i~~~G~~~~GKssl~~~~~~ 39 (181)
...|+++|++||||||+.+.++.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 34789999999999999999864
No 326
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.10 E-value=0.00034 Score=46.63 Aligned_cols=23 Identities=26% Similarity=0.375 Sum_probs=20.3
Q ss_pred ccEEEEEcCCCCChHHHHHhhhc
Q 030233 17 RIKLLMVGLDASGKTTILYKMKL 39 (181)
Q Consensus 17 ~~~i~~~G~~~~GKssl~~~~~~ 39 (181)
...|++.|.+||||||+.+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999864
No 327
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.10 E-value=0.00024 Score=48.75 Aligned_cols=22 Identities=23% Similarity=0.153 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChHHHHHhhhcC
Q 030233 19 KLLMVGLDASGKTTILYKMKLG 40 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~~ 40 (181)
-++++|++|+|||||++.+++.
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4799999999999999999873
No 328
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.10 E-value=0.00034 Score=50.13 Aligned_cols=26 Identities=19% Similarity=0.368 Sum_probs=22.3
Q ss_pred CCCccEEEEEcCCCCChHHHHHhhhc
Q 030233 14 PQCRIKLLMVGLDASGKTTILYKMKL 39 (181)
Q Consensus 14 ~~~~~~i~~~G~~~~GKssl~~~~~~ 39 (181)
+.+...|+++|++|||||||++.+.+
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999999988864
No 329
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.10 E-value=0.00038 Score=48.56 Aligned_cols=25 Identities=24% Similarity=0.292 Sum_probs=22.1
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhc
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKL 39 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~ 39 (181)
.+.++|++.|++||||||+.+.++.
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999999964
No 330
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.09 E-value=0.00042 Score=45.65 Aligned_cols=33 Identities=15% Similarity=0.230 Sum_probs=24.4
Q ss_pred HhhhhCCCCccEEEEEcCCCCChHHHHHhhhcC
Q 030233 8 LAKRFFPQCRIKLLMVGLDASGKTTILYKMKLG 40 (181)
Q Consensus 8 ~~~~~~~~~~~~i~~~G~~~~GKssl~~~~~~~ 40 (181)
+.+.......-.+++.|++|+|||+++..++..
T Consensus 34 l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 34 AIQILSRRTKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp HHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred HHHHHhCCCCCceEEECCCCCCHHHHHHHHHHH
Confidence 333333344567899999999999999988754
No 331
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=97.09 E-value=0.00027 Score=52.14 Aligned_cols=24 Identities=33% Similarity=0.383 Sum_probs=21.1
Q ss_pred EEEEEcCCCCChHHHHHhhhcCCc
Q 030233 19 KLLMVGLDASGKTTILYKMKLGEI 42 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~~~~ 42 (181)
-++++|++|||||||++.++|-..
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~~ 55 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFEQ 55 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCchHHHHHHHHhcCCC
Confidence 479999999999999999998543
No 332
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.08 E-value=0.00038 Score=47.16 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=21.4
Q ss_pred ccEEEEEcCCCCChHHHHHhhhcC
Q 030233 17 RIKLLMVGLDASGKTTILYKMKLG 40 (181)
Q Consensus 17 ~~~i~~~G~~~~GKssl~~~~~~~ 40 (181)
...|+++|++|+||||+++.+.+.
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 457999999999999999999875
No 333
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.08 E-value=0.014 Score=44.29 Aligned_cols=24 Identities=21% Similarity=0.252 Sum_probs=21.0
Q ss_pred ccEEEEEcCCCCChHHHHHhhhcC
Q 030233 17 RIKLLMVGLDASGKTTILYKMKLG 40 (181)
Q Consensus 17 ~~~i~~~G~~~~GKssl~~~~~~~ 40 (181)
+--|++.|+||+|||+|++.+++.
T Consensus 215 prGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 345899999999999999999864
No 334
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.06 E-value=0.00039 Score=47.57 Aligned_cols=23 Identities=22% Similarity=0.429 Sum_probs=20.6
Q ss_pred ccEEEEEcCCCCChHHHHHhhhc
Q 030233 17 RIKLLMVGLDASGKTTILYKMKL 39 (181)
Q Consensus 17 ~~~i~~~G~~~~GKssl~~~~~~ 39 (181)
.+.|++.|.+||||||+.+.++.
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998864
No 335
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.05 E-value=0.00033 Score=48.72 Aligned_cols=20 Identities=30% Similarity=0.439 Sum_probs=18.5
Q ss_pred EEEEEcCCCCChHHHHHhhh
Q 030233 19 KLLMVGLDASGKTTILYKMK 38 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~ 38 (181)
-++++|++|+|||||++.++
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 47999999999999999887
No 336
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.05 E-value=0.00038 Score=46.35 Aligned_cols=21 Identities=33% Similarity=0.477 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChHHHHHhhhc
Q 030233 19 KLLMVGLDASGKTTILYKMKL 39 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~ 39 (181)
.|++.|.+||||||+++.+..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998864
No 337
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.04 E-value=0.00037 Score=47.50 Aligned_cols=22 Identities=18% Similarity=0.345 Sum_probs=19.6
Q ss_pred cEEEEEcCCCCChHHHHHhhhc
Q 030233 18 IKLLMVGLDASGKTTILYKMKL 39 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~ 39 (181)
++|++.|.+||||||+.+.+..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998864
No 338
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=97.04 E-value=0.00033 Score=51.60 Aligned_cols=23 Identities=39% Similarity=0.348 Sum_probs=20.7
Q ss_pred EEEEEcCCCCChHHHHHhhhcCC
Q 030233 19 KLLMVGLDASGKTTILYKMKLGE 41 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~~~ 41 (181)
.++++|++|||||||++.++|-.
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999998754
No 339
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=97.04 E-value=0.00036 Score=50.03 Aligned_cols=24 Identities=25% Similarity=0.250 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChHHHHHhhhcCCc
Q 030233 19 KLLMVGLDASGKTTILYKMKLGEI 42 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~~~~ 42 (181)
.++++|++|+|||||++.++|-..
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl~~ 89 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGELE 89 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Confidence 579999999999999999987643
No 340
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.04 E-value=0.00049 Score=46.36 Aligned_cols=26 Identities=23% Similarity=0.248 Sum_probs=21.6
Q ss_pred CCCccEEEEEcCCCCChHHHHHhhhc
Q 030233 14 PQCRIKLLMVGLDASGKTTILYKMKL 39 (181)
Q Consensus 14 ~~~~~~i~~~G~~~~GKssl~~~~~~ 39 (181)
+.+...|++.|.+||||||+.+.++.
T Consensus 12 ~~~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 12 PDQVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TTTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 33445799999999999999998864
No 341
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=97.02 E-value=0.00035 Score=51.59 Aligned_cols=23 Identities=26% Similarity=0.218 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChHHHHHhhhcCC
Q 030233 19 KLLMVGLDASGKTTILYKMKLGE 41 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~~~ 41 (181)
.++++|++|||||||++.++|-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHCCC
Confidence 47999999999999999998854
No 342
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.02 E-value=0.00033 Score=49.78 Aligned_cols=21 Identities=24% Similarity=0.325 Sum_probs=19.7
Q ss_pred EEEEcCCCCChHHHHHhhhcC
Q 030233 20 LLMVGLDASGKTTILYKMKLG 40 (181)
Q Consensus 20 i~~~G~~~~GKssl~~~~~~~ 40 (181)
++++|++|+|||||++.+++.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 999999999999999999874
No 343
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=97.02 E-value=0.00036 Score=51.57 Aligned_cols=23 Identities=30% Similarity=0.427 Sum_probs=20.7
Q ss_pred EEEEEcCCCCChHHHHHhhhcCC
Q 030233 19 KLLMVGLDASGKTTILYKMKLGE 41 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~~~ 41 (181)
.++++|++|||||||++.++|-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 47999999999999999998854
No 344
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.02 E-value=0.00015 Score=47.91 Aligned_cols=52 Identities=27% Similarity=0.286 Sum_probs=26.3
Q ss_pred EEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEECCeEEEEEEcCCChhhH
Q 030233 19 KLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIR 75 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~ 75 (181)
.++++|++|||||||++.+++--.+. +.....+...+..+.-+|.++...++
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~~~~-----g~~~G~I~~dg~~i~~~~~~~~d~~r 55 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPILRER-----GLRVAVVKRHAHGDFEIDKEGKDSWK 55 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHHHT-----TCCEEEEEC------------CHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhc-----CCceEEEEEcCcccccCCccchhHHH
Confidence 58999999999999999997643221 22233344444443334444544444
No 345
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=97.01 E-value=0.00036 Score=51.82 Aligned_cols=23 Identities=30% Similarity=0.364 Sum_probs=20.7
Q ss_pred EEEEEcCCCCChHHHHHhhhcCC
Q 030233 19 KLLMVGLDASGKTTILYKMKLGE 41 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~~~ 41 (181)
-++++|++|||||||++.++|-.
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHcCC
Confidence 47999999999999999998854
No 346
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.01 E-value=0.00054 Score=48.01 Aligned_cols=24 Identities=17% Similarity=0.180 Sum_probs=21.3
Q ss_pred CCccEEEEEcCCCCChHHHHHhhh
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMK 38 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~ 38 (181)
+....|+++|++||||||+++.++
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHH
Confidence 345689999999999999999998
No 347
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=97.01 E-value=0.00037 Score=51.49 Aligned_cols=23 Identities=26% Similarity=0.379 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChHHHHHhhhcCC
Q 030233 19 KLLMVGLDASGKTTILYKMKLGE 41 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~~~ 41 (181)
-++++|++|+|||||++.+++-.
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHhcCC
Confidence 47999999999999999998754
No 348
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.01 E-value=0.00044 Score=49.98 Aligned_cols=25 Identities=20% Similarity=0.197 Sum_probs=21.8
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhc
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKL 39 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~ 39 (181)
.+...|+++|++|||||||++.+.+
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4456799999999999999999876
No 349
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.00 E-value=0.00052 Score=46.21 Aligned_cols=24 Identities=33% Similarity=0.393 Sum_probs=21.4
Q ss_pred ccEEEEEcCCCCChHHHHHhhhcC
Q 030233 17 RIKLLMVGLDASGKTTILYKMKLG 40 (181)
Q Consensus 17 ~~~i~~~G~~~~GKssl~~~~~~~ 40 (181)
...|++.|.+||||||+++.+...
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 467999999999999999999764
No 350
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.00 E-value=0.0005 Score=45.96 Aligned_cols=24 Identities=29% Similarity=0.191 Sum_probs=20.7
Q ss_pred CccEEEEEcCCCCChHHHHHhhhc
Q 030233 16 CRIKLLMVGLDASGKTTILYKMKL 39 (181)
Q Consensus 16 ~~~~i~~~G~~~~GKssl~~~~~~ 39 (181)
+...|++.|.+||||||+.+.+..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999998864
No 351
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=97.00 E-value=0.0077 Score=40.83 Aligned_cols=68 Identities=6% Similarity=-0.110 Sum_probs=46.9
Q ss_pred CCeEEEEEEcCCC-hhhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 030233 59 KNKSFCVWDVGGQ-NKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPN 132 (181)
Q Consensus 59 ~~~~~~i~d~~g~-~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~ 132 (181)
....+.++|+|+. ... .....+..+|.+|++...+ ..++......+..+.... +.++.+++|+.|...
T Consensus 66 ~~yD~viiD~p~~~~~~--~~~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~~---~~~~~vv~N~~~~~~ 134 (209)
T 3cwq_A 66 PKYQNIVIDTQARPEDE--DLEALADGCDLLVIPSTPD-ALALDALMLTIETLQKLG---NNRFRILLTIIPPYP 134 (209)
T ss_dssp GGCSEEEEEEECCCSSS--HHHHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHHTC---SSSEEEEECSBCCTT
T ss_pred hcCCEEEEeCCCCcCcH--HHHHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHhcc---CCCEEEEEEecCCcc
Confidence 4567899999986 332 2334566799999999876 556666666665554421 456889999998654
No 352
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.00 E-value=0.00049 Score=46.72 Aligned_cols=24 Identities=25% Similarity=0.314 Sum_probs=21.3
Q ss_pred CccEEEEEcCCCCChHHHHHhhhc
Q 030233 16 CRIKLLMVGLDASGKTTILYKMKL 39 (181)
Q Consensus 16 ~~~~i~~~G~~~~GKssl~~~~~~ 39 (181)
+...|++.|.+||||||+++.+..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999874
No 353
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.99 E-value=0.00024 Score=51.34 Aligned_cols=23 Identities=35% Similarity=0.332 Sum_probs=20.7
Q ss_pred EEEEEcCCCCChHHHHHhhhcCC
Q 030233 19 KLLMVGLDASGKTTILYKMKLGE 41 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~~~ 41 (181)
.++++|++|+|||||++.+++-.
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTSS
T ss_pred EEEEECCCCchHHHHHHHHHcCC
Confidence 68999999999999999998754
No 354
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.99 E-value=0.00045 Score=47.51 Aligned_cols=23 Identities=22% Similarity=0.431 Sum_probs=20.4
Q ss_pred ccEEEEEcCCCCChHHHHHhhhc
Q 030233 17 RIKLLMVGLDASGKTTILYKMKL 39 (181)
Q Consensus 17 ~~~i~~~G~~~~GKssl~~~~~~ 39 (181)
...|++.|.+||||||+.+.++.
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 36799999999999999999864
No 355
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.99 E-value=0.00029 Score=45.34 Aligned_cols=25 Identities=16% Similarity=0.195 Sum_probs=21.2
Q ss_pred ccEEEEEcCCCCChHHHHHhhhcCC
Q 030233 17 RIKLLMVGLDASGKTTILYKMKLGE 41 (181)
Q Consensus 17 ~~~i~~~G~~~~GKssl~~~~~~~~ 41 (181)
.-.++++|++|+|||+|++.+++..
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 3468999999999999999998643
No 356
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.99 E-value=0.00029 Score=52.14 Aligned_cols=25 Identities=20% Similarity=0.298 Sum_probs=22.1
Q ss_pred ccEEEEEcCCCCChHHHHHhhhcCC
Q 030233 17 RIKLLMVGLDASGKTTILYKMKLGE 41 (181)
Q Consensus 17 ~~~i~~~G~~~~GKssl~~~~~~~~ 41 (181)
.-+++++|++|+|||||++.+++-.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999998754
No 357
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.99 E-value=0.00048 Score=47.72 Aligned_cols=26 Identities=12% Similarity=0.178 Sum_probs=21.1
Q ss_pred CCCccEEEEEcCCCCChHHHHHhhhc
Q 030233 14 PQCRIKLLMVGLDASGKTTILYKMKL 39 (181)
Q Consensus 14 ~~~~~~i~~~G~~~~GKssl~~~~~~ 39 (181)
.++++.|++.|++|+||||+.+.+..
T Consensus 6 ~~~~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 6 VSGSLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp ---CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34568899999999999999999874
No 358
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.99 E-value=0.00052 Score=49.11 Aligned_cols=24 Identities=25% Similarity=0.268 Sum_probs=21.0
Q ss_pred CccEEEEEcCCCCChHHHHHhhhc
Q 030233 16 CRIKLLMVGLDASGKTTILYKMKL 39 (181)
Q Consensus 16 ~~~~i~~~G~~~~GKssl~~~~~~ 39 (181)
....|++.|++||||||+++.+..
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999964
No 359
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.98 E-value=0.0004 Score=51.49 Aligned_cols=23 Identities=35% Similarity=0.355 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChHHHHHhhhcCC
Q 030233 19 KLLMVGLDASGKTTILYKMKLGE 41 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~~~ 41 (181)
.++++|++|||||||++.++|-.
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 47999999999999999998854
No 360
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.98 E-value=0.00039 Score=51.57 Aligned_cols=24 Identities=29% Similarity=0.300 Sum_probs=21.1
Q ss_pred EEEEEcCCCCChHHHHHhhhcCCc
Q 030233 19 KLLMVGLDASGKTTILYKMKLGEI 42 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~~~~ 42 (181)
.++++|++|||||||++.++|-..
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~~ 54 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLEE 54 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCcHHHHHHHHHHcCCC
Confidence 479999999999999999988653
No 361
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.97 E-value=0.00053 Score=44.68 Aligned_cols=22 Identities=23% Similarity=0.477 Sum_probs=19.6
Q ss_pred cEEEEEcCCCCChHHHHHhhhc
Q 030233 18 IKLLMVGLDASGKTTILYKMKL 39 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~ 39 (181)
++|++.|.+||||||+.+.+..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 1 MRIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp CEEEEESCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998865
No 362
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.97 E-value=0.00048 Score=45.54 Aligned_cols=24 Identities=25% Similarity=0.290 Sum_probs=20.7
Q ss_pred CccEEEEEcCCCCChHHHHHhhhc
Q 030233 16 CRIKLLMVGLDASGKTTILYKMKL 39 (181)
Q Consensus 16 ~~~~i~~~G~~~~GKssl~~~~~~ 39 (181)
+...|++.|.+|+||||+.+.+..
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHH
Confidence 345689999999999999999874
No 363
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.96 E-value=0.0004 Score=51.26 Aligned_cols=22 Identities=36% Similarity=0.321 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChHHHHHhhhcC
Q 030233 19 KLLMVGLDASGKTTILYKMKLG 40 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~~ 40 (181)
.++++|++||||||+++.+++.
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 7999999999999999999764
No 364
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.96 E-value=0.0004 Score=50.15 Aligned_cols=23 Identities=35% Similarity=0.484 Sum_probs=20.3
Q ss_pred ccEEEEEcCCCCChHHHHHhhhc
Q 030233 17 RIKLLMVGLDASGKTTILYKMKL 39 (181)
Q Consensus 17 ~~~i~~~G~~~~GKssl~~~~~~ 39 (181)
.-.++++|++||||||+++.+++
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHH
Confidence 34789999999999999999975
No 365
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.95 E-value=0.00054 Score=46.41 Aligned_cols=24 Identities=29% Similarity=0.223 Sum_probs=21.2
Q ss_pred CccEEEEEcCCCCChHHHHHhhhc
Q 030233 16 CRIKLLMVGLDASGKTTILYKMKL 39 (181)
Q Consensus 16 ~~~~i~~~G~~~~GKssl~~~~~~ 39 (181)
+...|++.|.+||||||+.+.+..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHH
Confidence 356799999999999999999864
No 366
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.93 E-value=0.0005 Score=47.01 Aligned_cols=23 Identities=30% Similarity=0.390 Sum_probs=20.4
Q ss_pred ccEEEEEcCCCCChHHHHHhhhc
Q 030233 17 RIKLLMVGLDASGKTTILYKMKL 39 (181)
Q Consensus 17 ~~~i~~~G~~~~GKssl~~~~~~ 39 (181)
.+.|++.|.+||||||+.+.++.
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36799999999999999998864
No 367
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.92 E-value=0.00049 Score=50.28 Aligned_cols=24 Identities=25% Similarity=0.211 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCChHHHHHhhhcCC
Q 030233 18 IKLLMVGLDASGKTTILYKMKLGE 41 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~~~ 41 (181)
-.++++|++|+|||||++.+++--
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999998754
No 368
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.92 E-value=0.00046 Score=48.26 Aligned_cols=21 Identities=29% Similarity=0.358 Sum_probs=19.6
Q ss_pred EEEEcCCCCChHHHHHhhhcC
Q 030233 20 LLMVGLDASGKTTILYKMKLG 40 (181)
Q Consensus 20 i~~~G~~~~GKssl~~~~~~~ 40 (181)
++++|++|+|||||++.+++.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999999864
No 369
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.91 E-value=0.00052 Score=45.18 Aligned_cols=21 Identities=24% Similarity=0.507 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChHHHHHhhhc
Q 030233 19 KLLMVGLDASGKTTILYKMKL 39 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~ 39 (181)
+|+++|++||||||+.+.++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999998864
No 370
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.91 E-value=0.00067 Score=46.87 Aligned_cols=25 Identities=20% Similarity=0.278 Sum_probs=21.5
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhc
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKL 39 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~ 39 (181)
.+...|++.|.+||||||+.+.++.
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999999864
No 371
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.90 E-value=0.00062 Score=46.76 Aligned_cols=22 Identities=32% Similarity=0.366 Sum_probs=19.4
Q ss_pred cEEEEEcCCCCChHHHHHhhhc
Q 030233 18 IKLLMVGLDASGKTTILYKMKL 39 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~ 39 (181)
+.|++.|.+||||||+++.+..
T Consensus 1 m~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 1 MNILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998864
No 372
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.90 E-value=0.00074 Score=44.90 Aligned_cols=23 Identities=22% Similarity=0.161 Sum_probs=20.1
Q ss_pred ccEEEEEcCCCCChHHHHHhhhc
Q 030233 17 RIKLLMVGLDASGKTTILYKMKL 39 (181)
Q Consensus 17 ~~~i~~~G~~~~GKssl~~~~~~ 39 (181)
...|++.|.+||||||+.+.+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998864
No 373
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.90 E-value=0.0005 Score=49.59 Aligned_cols=22 Identities=36% Similarity=0.564 Sum_probs=19.9
Q ss_pred cEEEEEcCCCCChHHHHHhhhc
Q 030233 18 IKLLMVGLDASGKTTILYKMKL 39 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~ 39 (181)
-.++++|++|+||||+++.+++
T Consensus 101 ~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 4689999999999999999976
No 374
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.90 E-value=0.00054 Score=46.93 Aligned_cols=23 Identities=35% Similarity=0.406 Sum_probs=20.2
Q ss_pred ccEEEEEcCCCCChHHHHHhhhc
Q 030233 17 RIKLLMVGLDASGKTTILYKMKL 39 (181)
Q Consensus 17 ~~~i~~~G~~~~GKssl~~~~~~ 39 (181)
...|++.|++||||||+.+.++.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998864
No 375
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.89 E-value=0.00071 Score=48.24 Aligned_cols=24 Identities=25% Similarity=0.422 Sum_probs=21.4
Q ss_pred CCccEEEEEcCCCCChHHHHHhhh
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMK 38 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~ 38 (181)
.+.+.|++.|.+||||||+.+.+.
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 446789999999999999999986
No 376
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.89 E-value=0.00087 Score=46.08 Aligned_cols=25 Identities=16% Similarity=0.118 Sum_probs=21.5
Q ss_pred CccEEEEEcCCCCChHHHHHhhhcC
Q 030233 16 CRIKLLMVGLDASGKTTILYKMKLG 40 (181)
Q Consensus 16 ~~~~i~~~G~~~~GKssl~~~~~~~ 40 (181)
..-.+++.|++|+|||+++..++..
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4567999999999999999988753
No 377
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.88 E-value=0.00052 Score=50.76 Aligned_cols=24 Identities=25% Similarity=0.320 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCChHHHHHhhhcCC
Q 030233 18 IKLLMVGLDASGKTTILYKMKLGE 41 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~~~ 41 (181)
-.++++|++|+|||||++.+++--
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHHhcC
Confidence 478999999999999999998754
No 378
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.87 E-value=0.00053 Score=51.16 Aligned_cols=22 Identities=27% Similarity=0.350 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChHHHHHhhhcC
Q 030233 19 KLLMVGLDASGKTTILYKMKLG 40 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~~ 40 (181)
.++++|++|||||||++.+++-
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCChHHHHHHHHhCC
Confidence 5799999999999999999874
No 379
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.87 E-value=0.00033 Score=51.52 Aligned_cols=23 Identities=22% Similarity=0.234 Sum_probs=20.7
Q ss_pred EEEEEcCCCCChHHHHHhhhcCC
Q 030233 19 KLLMVGLDASGKTTILYKMKLGE 41 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~~~ 41 (181)
.++++|++|||||||++.++|-.
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEEECCCCccHHHHHHHHHcCC
Confidence 47999999999999999998854
No 380
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.87 E-value=0.00073 Score=46.11 Aligned_cols=23 Identities=26% Similarity=0.255 Sum_probs=20.8
Q ss_pred ccEEEEEcCCCCChHHHHHhhhc
Q 030233 17 RIKLLMVGLDASGKTTILYKMKL 39 (181)
Q Consensus 17 ~~~i~~~G~~~~GKssl~~~~~~ 39 (181)
++.|++.|.+||||||+.+.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999875
No 381
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.86 E-value=0.00055 Score=48.02 Aligned_cols=21 Identities=29% Similarity=0.371 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChHHHHHhhhc
Q 030233 19 KLLMVGLDASGKTTILYKMKL 39 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~ 39 (181)
.|+++|++|||||||...++.
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999999865
No 382
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.86 E-value=0.00076 Score=46.56 Aligned_cols=26 Identities=31% Similarity=0.267 Sum_probs=22.3
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhcC
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKLG 40 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~~ 40 (181)
.+..-|++.|+.|+||||+++.+.+.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 34567999999999999999999865
No 383
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.85 E-value=0.00079 Score=45.61 Aligned_cols=21 Identities=19% Similarity=0.213 Sum_probs=18.7
Q ss_pred EEEEEcCCCCChHHHHHhhhc
Q 030233 19 KLLMVGLDASGKTTILYKMKL 39 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~ 39 (181)
.+++.|+||+|||+++.++++
T Consensus 60 ~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999888865
No 384
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.85 E-value=0.00074 Score=44.98 Aligned_cols=21 Identities=38% Similarity=0.425 Sum_probs=19.2
Q ss_pred EEEEEcCCCCChHHHHHhhhc
Q 030233 19 KLLMVGLDASGKTTILYKMKL 39 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~ 39 (181)
.|++.|.+||||||+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999865
No 385
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.84 E-value=0.016 Score=43.40 Aligned_cols=24 Identities=17% Similarity=0.225 Sum_probs=20.9
Q ss_pred ccEEEEEcCCCCChHHHHHhhhcC
Q 030233 17 RIKLLMVGLDASGKTTILYKMKLG 40 (181)
Q Consensus 17 ~~~i~~~G~~~~GKssl~~~~~~~ 40 (181)
+--+++.|+||+|||+|+..+++.
T Consensus 182 prGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CCCEEEESCSSSSHHHHHHHHHHH
T ss_pred CCceEEeCCCCCCHHHHHHHHHHh
Confidence 345899999999999999999864
No 386
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.84 E-value=0.00077 Score=44.50 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=20.9
Q ss_pred CccEEEEEcCCCCChHHHHHhhhc
Q 030233 16 CRIKLLMVGLDASGKTTILYKMKL 39 (181)
Q Consensus 16 ~~~~i~~~G~~~~GKssl~~~~~~ 39 (181)
+...|++.|.+||||||+.+.+.+
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345789999999999999999875
No 387
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.83 E-value=0.02 Score=43.16 Aligned_cols=24 Identities=17% Similarity=0.227 Sum_probs=21.1
Q ss_pred ccEEEEEcCCCCChHHHHHhhhcC
Q 030233 17 RIKLLMVGLDASGKTTILYKMKLG 40 (181)
Q Consensus 17 ~~~i~~~G~~~~GKssl~~~~~~~ 40 (181)
+--|++.|+||+|||+|+..+++.
T Consensus 216 prGvLLyGPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp CSEEEEESSTTTTHHHHHHHHHHH
T ss_pred CCCCceECCCCchHHHHHHHHHHH
Confidence 345999999999999999999864
No 388
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.83 E-value=0.00079 Score=49.11 Aligned_cols=24 Identities=33% Similarity=0.493 Sum_probs=21.1
Q ss_pred CccEEEEEcCCCCChHHHHHhhhc
Q 030233 16 CRIKLLMVGLDASGKTTILYKMKL 39 (181)
Q Consensus 16 ~~~~i~~~G~~~~GKssl~~~~~~ 39 (181)
+.--++++|++|+||||+++.+++
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999976
No 389
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.83 E-value=0.00061 Score=50.58 Aligned_cols=24 Identities=29% Similarity=0.213 Sum_probs=20.9
Q ss_pred ccEEEEEcCCCCChHHHHHhhhcC
Q 030233 17 RIKLLMVGLDASGKTTILYKMKLG 40 (181)
Q Consensus 17 ~~~i~~~G~~~~GKssl~~~~~~~ 40 (181)
.-.++++|++||||||+++.+++-
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 346899999999999999999863
No 390
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.82 E-value=0.00068 Score=44.54 Aligned_cols=22 Identities=36% Similarity=0.360 Sum_probs=19.7
Q ss_pred cEEEEEcCCCCChHHHHHhhhc
Q 030233 18 IKLLMVGLDASGKTTILYKMKL 39 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~ 39 (181)
..++++|.+|+|||||+.+++.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999975
No 391
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.82 E-value=0.00078 Score=45.10 Aligned_cols=23 Identities=26% Similarity=0.216 Sum_probs=20.3
Q ss_pred ccEEEEEcCCCCChHHHHHhhhc
Q 030233 17 RIKLLMVGLDASGKTTILYKMKL 39 (181)
Q Consensus 17 ~~~i~~~G~~~~GKssl~~~~~~ 39 (181)
...|++.|.+||||||+.+.+..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998865
No 392
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.81 E-value=0.00081 Score=47.05 Aligned_cols=25 Identities=24% Similarity=0.194 Sum_probs=21.4
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhc
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKL 39 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~ 39 (181)
.+.+.|++.|++||||||+.+.+..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999998865
No 393
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=96.81 E-value=0.0008 Score=49.75 Aligned_cols=23 Identities=39% Similarity=0.628 Sum_probs=20.7
Q ss_pred CCccEEEEEcCCCCChHHHHHhh
Q 030233 15 QCRIKLLMVGLDASGKTTILYKM 37 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~ 37 (181)
.+..||+++|.+|||||||+.++
T Consensus 31 ~~~~killlG~~~SGKST~~kq~ 53 (362)
T 1zcb_A 31 ARLVKILLLGAGESGKSTFLKQM 53 (362)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHH
T ss_pred cCccEEEEECCCCCcHHHHHHHH
Confidence 35689999999999999999887
No 394
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.80 E-value=0.00053 Score=48.07 Aligned_cols=24 Identities=33% Similarity=0.344 Sum_probs=20.9
Q ss_pred CccEEEEEcCCCCChHHHHHhhhc
Q 030233 16 CRIKLLMVGLDASGKTTILYKMKL 39 (181)
Q Consensus 16 ~~~~i~~~G~~~~GKssl~~~~~~ 39 (181)
....|+++|++||||||+.+.+..
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999998864
No 395
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.79 E-value=0.017 Score=43.60 Aligned_cols=22 Identities=23% Similarity=0.371 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChHHHHHhhhcC
Q 030233 19 KLLMVGLDASGKTTILYKMKLG 40 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~~ 40 (181)
-+++.|+||+|||+++..+++.
T Consensus 208 GiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 208 GVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp EEEEESCTTTTHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999864
No 396
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.79 E-value=0.00084 Score=44.85 Aligned_cols=21 Identities=29% Similarity=0.420 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChHHHHHhhhc
Q 030233 19 KLLMVGLDASGKTTILYKMKL 39 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~ 39 (181)
-|++.|.+||||||+++.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999865
No 397
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.79 E-value=0.0046 Score=39.24 Aligned_cols=24 Identities=13% Similarity=0.088 Sum_probs=20.8
Q ss_pred ccEEEEEcCCCCChHHHHHhhhcC
Q 030233 17 RIKLLMVGLDASGKTTILYKMKLG 40 (181)
Q Consensus 17 ~~~i~~~G~~~~GKssl~~~~~~~ 40 (181)
...|++.|++|+|||++++.+...
T Consensus 27 ~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp SSCEEEEEETTCCHHHHHGGGCCT
T ss_pred CCcEEEECCCCccHHHHHHHHHHh
Confidence 456999999999999999988654
No 398
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.78 E-value=0.00065 Score=49.64 Aligned_cols=23 Identities=26% Similarity=0.274 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCChHHHHHhhhcC
Q 030233 18 IKLLMVGLDASGKTTILYKMKLG 40 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~~ 40 (181)
-.++++|++|+|||||++.+++.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 34899999999999999999864
No 399
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.77 E-value=0.00072 Score=48.01 Aligned_cols=21 Identities=29% Similarity=0.358 Sum_probs=19.6
Q ss_pred EEEEcCCCCChHHHHHhhhcC
Q 030233 20 LLMVGLDASGKTTILYKMKLG 40 (181)
Q Consensus 20 i~~~G~~~~GKssl~~~~~~~ 40 (181)
++++|++|+|||||++.+++.
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHHH
Confidence 899999999999999999864
No 400
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.76 E-value=0.00072 Score=46.33 Aligned_cols=21 Identities=19% Similarity=0.251 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChHHHHHhhhc
Q 030233 19 KLLMVGLDASGKTTILYKMKL 39 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~ 39 (181)
-++++|++|+|||||+..+++
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 578999999999999999984
No 401
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=96.76 E-value=0.00032 Score=51.69 Aligned_cols=24 Identities=21% Similarity=0.346 Sum_probs=21.1
Q ss_pred EEEEEcCCCCChHHHHHhhhcCCc
Q 030233 19 KLLMVGLDASGKTTILYKMKLGEI 42 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~~~~ 42 (181)
.++++|++|||||||++.++|-..
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~~ 56 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLDV 56 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 479999999999999999988643
No 402
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.75 E-value=0.00072 Score=50.95 Aligned_cols=23 Identities=35% Similarity=0.369 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCChHHHHHhhhcC
Q 030233 18 IKLLMVGLDASGKTTILYKMKLG 40 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~~ 40 (181)
=.++++|++||||||+++.+++.
T Consensus 168 gii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 168 GIILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHhh
Confidence 35899999999999999999763
No 403
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.72 E-value=0.00081 Score=52.02 Aligned_cols=24 Identities=38% Similarity=0.397 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCChHHHHHhhhcCC
Q 030233 18 IKLLMVGLDASGKTTILYKMKLGE 41 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~~~ 41 (181)
-.++++|++||||||+++.+++--
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGGS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 358999999999999999998743
No 404
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.72 E-value=0.00096 Score=43.62 Aligned_cols=21 Identities=29% Similarity=0.415 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChHHHHHhhhc
Q 030233 19 KLLMVGLDASGKTTILYKMKL 39 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~ 39 (181)
.|++.|.+||||||+.+.+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998864
No 405
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.72 E-value=0.00098 Score=45.66 Aligned_cols=23 Identities=30% Similarity=0.368 Sum_probs=19.1
Q ss_pred ccE-EEEEcCCCCChHHHHHhhhc
Q 030233 17 RIK-LLMVGLDASGKTTILYKMKL 39 (181)
Q Consensus 17 ~~~-i~~~G~~~~GKssl~~~~~~ 39 (181)
+.+ |+++|+|||||+|...+++.
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 344 67799999999999998875
No 406
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.71 E-value=0.0011 Score=46.68 Aligned_cols=22 Identities=23% Similarity=0.454 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCChHHHHHhhhc
Q 030233 18 IKLLMVGLDASGKTTILYKMKL 39 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~ 39 (181)
..|++.|.+||||||+.+.+..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 4699999999999999999874
No 407
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.71 E-value=0.0016 Score=46.22 Aligned_cols=25 Identities=20% Similarity=0.216 Sum_probs=21.5
Q ss_pred CccEEEEEcCCCCChHHHHHhhhcC
Q 030233 16 CRIKLLMVGLDASGKTTILYKMKLG 40 (181)
Q Consensus 16 ~~~~i~~~G~~~~GKssl~~~~~~~ 40 (181)
..-.+++.|++|+|||++++.++..
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 3456999999999999999999764
No 408
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.70 E-value=0.00085 Score=49.52 Aligned_cols=22 Identities=36% Similarity=0.564 Sum_probs=19.9
Q ss_pred cEEEEEcCCCCChHHHHHhhhc
Q 030233 18 IKLLMVGLDASGKTTILYKMKL 39 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~ 39 (181)
-.++++|++|+||||+++.+++
T Consensus 158 ~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHHh
Confidence 4689999999999999999976
No 409
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.70 E-value=0.00096 Score=44.18 Aligned_cols=21 Identities=43% Similarity=0.591 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChHHHHHhhhc
Q 030233 19 KLLMVGLDASGKTTILYKMKL 39 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~ 39 (181)
.|++.|.+||||||+.+.+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998864
No 410
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.70 E-value=0.0012 Score=44.69 Aligned_cols=22 Identities=27% Similarity=0.382 Sum_probs=19.6
Q ss_pred EEEEEcCCCCChHHHHHhhhcC
Q 030233 19 KLLMVGLDASGKTTILYKMKLG 40 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~~ 40 (181)
.+++.|++|+|||+++..++..
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999988753
No 411
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.69 E-value=0.00091 Score=46.84 Aligned_cols=23 Identities=30% Similarity=0.333 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCChHHHHHhhhcC
Q 030233 18 IKLLMVGLDASGKTTILYKMKLG 40 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~~ 40 (181)
-.+++.|++|+|||++++.+++.
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 35899999999999999999763
No 412
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.69 E-value=0.0017 Score=45.85 Aligned_cols=27 Identities=26% Similarity=0.282 Sum_probs=22.6
Q ss_pred CCCccEEEEEcCCCCChHHHHHhhhcC
Q 030233 14 PQCRIKLLMVGLDASGKTTILYKMKLG 40 (181)
Q Consensus 14 ~~~~~~i~~~G~~~~GKssl~~~~~~~ 40 (181)
......+++.|++|+|||+++..++..
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 344567999999999999999999764
No 413
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.68 E-value=0.0012 Score=43.05 Aligned_cols=21 Identities=29% Similarity=0.638 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChHHHHHhhhc
Q 030233 19 KLLMVGLDASGKTTILYKMKL 39 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~ 39 (181)
.|++.|.+||||||+.+.+..
T Consensus 9 ~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998864
No 414
>3uc9_A Increased recombination centers protein 6; rossmann-fold, clathrin accessory factor; 1.80A {Saccharomyces cerevisiae}
Probab=96.68 E-value=0.0039 Score=42.86 Aligned_cols=29 Identities=24% Similarity=0.165 Sum_probs=24.6
Q ss_pred CCCCccEEEEEcCCCCChHHHHHhhhcCC
Q 030233 13 FPQCRIKLLMVGLDASGKTTILYKMKLGE 41 (181)
Q Consensus 13 ~~~~~~~i~~~G~~~~GKssl~~~~~~~~ 41 (181)
.|+.++-|++-|+++.|||.|++++.+.+
T Consensus 25 ~P~nkilvl~~~~~~~~~~~~~~~lf~~~ 53 (233)
T 3uc9_A 25 YPQNKILVLSDHPHNFLKTQFLQDLFHCS 53 (233)
T ss_dssp CCCCEEEEEEEGGGHHHHHHHHHHHHCCC
T ss_pred cCCCceEEEecCcccccHHHHHHHHhccc
Confidence 46777777777999999999999999875
No 415
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.67 E-value=0.00031 Score=47.71 Aligned_cols=21 Identities=29% Similarity=0.485 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChHHHHHhhhc
Q 030233 19 KLLMVGLDASGKTTILYKMKL 39 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~ 39 (181)
.|++.|.+||||||+++.+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 489999999999999999864
No 416
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.66 E-value=0.00091 Score=51.32 Aligned_cols=23 Identities=39% Similarity=0.572 Sum_probs=20.4
Q ss_pred ccEEEEEcCCCCChHHHHHhhhc
Q 030233 17 RIKLLMVGLDASGKTTILYKMKL 39 (181)
Q Consensus 17 ~~~i~~~G~~~~GKssl~~~~~~ 39 (181)
.-.++++|++|+||||+++.+++
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHH
Confidence 34689999999999999999875
No 417
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.65 E-value=0.00079 Score=51.39 Aligned_cols=26 Identities=19% Similarity=0.211 Sum_probs=22.1
Q ss_pred CccEEEEEcCCCCChHHHHHhhhcCC
Q 030233 16 CRIKLLMVGLDASGKTTILYKMKLGE 41 (181)
Q Consensus 16 ~~~~i~~~G~~~~GKssl~~~~~~~~ 41 (181)
..-.++++|++|+|||||++.+++-.
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 34568999999999999999998754
No 418
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.65 E-value=0.0015 Score=47.91 Aligned_cols=21 Identities=29% Similarity=0.392 Sum_probs=19.5
Q ss_pred EEEEEcCCCCChHHHHHhhhc
Q 030233 19 KLLMVGLDASGKTTILYKMKL 39 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~ 39 (181)
.+++.|++|+||||+++.+++
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 499999999999999999877
No 419
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.64 E-value=0.0015 Score=45.17 Aligned_cols=25 Identities=24% Similarity=0.305 Sum_probs=21.6
Q ss_pred CccEEEEEcCCCCChHHHHHhhhcC
Q 030233 16 CRIKLLMVGLDASGKTTILYKMKLG 40 (181)
Q Consensus 16 ~~~~i~~~G~~~~GKssl~~~~~~~ 40 (181)
+...|++.|++||||||+++.+...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4567999999999999999998753
No 420
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.63 E-value=0.00094 Score=47.82 Aligned_cols=22 Identities=18% Similarity=0.289 Sum_probs=19.5
Q ss_pred EEEEEcCCCCChHHHHHhhhcC
Q 030233 19 KLLMVGLDASGKTTILYKMKLG 40 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~~ 40 (181)
-++++|++|+|||||+..+++.
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 4799999999999999998764
No 421
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.63 E-value=0.0023 Score=43.01 Aligned_cols=23 Identities=26% Similarity=0.205 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCChHHHHHhhhcC
Q 030233 18 IKLLMVGLDASGKTTILYKMKLG 40 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~~ 40 (181)
..+++.|++|+|||+|+..++..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 67999999999999999988754
No 422
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.60 E-value=0.0023 Score=47.00 Aligned_cols=26 Identities=31% Similarity=0.454 Sum_probs=21.7
Q ss_pred CCCccEEEEEcCCCCChHHHHHhhhc
Q 030233 14 PQCRIKLLMVGLDASGKTTILYKMKL 39 (181)
Q Consensus 14 ~~~~~~i~~~G~~~~GKssl~~~~~~ 39 (181)
+.+..+|+++|++|+||||+...+++
T Consensus 21 ~g~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 21 DNYRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp TCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCeeEEEEECCCCCcHHHHHHHHHH
Confidence 34456899999999999999987765
No 423
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.60 E-value=0.0011 Score=45.01 Aligned_cols=21 Identities=38% Similarity=0.347 Sum_probs=19.5
Q ss_pred EEEEEcCCCCChHHHHHhhhc
Q 030233 19 KLLMVGLDASGKTTILYKMKL 39 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~ 39 (181)
-++++|++|+|||||+..+++
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 579999999999999999986
No 424
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.59 E-value=0.0015 Score=44.37 Aligned_cols=25 Identities=32% Similarity=0.542 Sum_probs=21.2
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhc
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKL 39 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~ 39 (181)
.....|++.|.+|+||||+++.+..
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHH
Confidence 3456789999999999999998865
No 425
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.58 E-value=0.00079 Score=48.84 Aligned_cols=28 Identities=11% Similarity=0.064 Sum_probs=23.5
Q ss_pred CCCCccEEEEEcCCCCChHHHHHhhhcC
Q 030233 13 FPQCRIKLLMVGLDASGKTTILYKMKLG 40 (181)
Q Consensus 13 ~~~~~~~i~~~G~~~~GKssl~~~~~~~ 40 (181)
.......+++.|+||+|||++++.++..
T Consensus 41 ~~~~~~~lli~GpPGTGKT~~v~~v~~~ 68 (318)
T 3te6_A 41 MSSQNKLFYITNADDSTKFQLVNDVMDE 68 (318)
T ss_dssp HTTCCCEEEEECCCSHHHHHHHHHHHHH
T ss_pred cCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3456678999999999999999998753
No 426
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.57 E-value=0.0013 Score=43.42 Aligned_cols=21 Identities=29% Similarity=0.335 Sum_probs=18.6
Q ss_pred EEEEEcCCCCChHHHHHhhhc
Q 030233 19 KLLMVGLDASGKTTILYKMKL 39 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~ 39 (181)
-.+++|++|+|||||+..+..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999854
No 427
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.56 E-value=0.026 Score=43.01 Aligned_cols=24 Identities=21% Similarity=0.192 Sum_probs=21.0
Q ss_pred ccEEEEEcCCCCChHHHHHhhhcC
Q 030233 17 RIKLLMVGLDASGKTTILYKMKLG 40 (181)
Q Consensus 17 ~~~i~~~G~~~~GKssl~~~~~~~ 40 (181)
+--|++.|+||+|||+|++.+++.
T Consensus 243 prGILLyGPPGTGKTlLAkAiA~e 266 (467)
T 4b4t_H 243 PKGILLYGPPGTGKTLCARAVANR 266 (467)
T ss_dssp CSEEEECSCTTSSHHHHHHHHHHH
T ss_pred CCceEeeCCCCCcHHHHHHHHHhc
Confidence 446899999999999999999864
No 428
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.56 E-value=0.0013 Score=48.41 Aligned_cols=26 Identities=19% Similarity=0.185 Sum_probs=22.6
Q ss_pred CccEEEEEcCCCCChHHHHHhhhcCC
Q 030233 16 CRIKLLMVGLDASGKTTILYKMKLGE 41 (181)
Q Consensus 16 ~~~~i~~~G~~~~GKssl~~~~~~~~ 41 (181)
+--+++++|++|+|||||++.+++..
T Consensus 70 ~Gq~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 70 IGQRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34578999999999999999998864
No 429
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.56 E-value=0.0012 Score=45.51 Aligned_cols=23 Identities=26% Similarity=0.182 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCChHHHHHhhhcC
Q 030233 18 IKLLMVGLDASGKTTILYKMKLG 40 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~~ 40 (181)
--++++|++|+|||||+..+++.
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHH
Confidence 35799999999999999999874
No 430
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.55 E-value=0.0012 Score=46.31 Aligned_cols=23 Identities=35% Similarity=0.375 Sum_probs=20.4
Q ss_pred ccEEEEEcCCCCChHHHHHhhhc
Q 030233 17 RIKLLMVGLDASGKTTILYKMKL 39 (181)
Q Consensus 17 ~~~i~~~G~~~~GKssl~~~~~~ 39 (181)
.-.|+++|++|+||||+.+.+++
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999999865
No 431
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.54 E-value=0.0025 Score=40.60 Aligned_cols=27 Identities=15% Similarity=0.143 Sum_probs=22.7
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhcCC
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKLGE 41 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~~~ 41 (181)
.....|++.|++|+|||+++..+....
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 345679999999999999999997654
No 432
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.54 E-value=0.0016 Score=43.68 Aligned_cols=24 Identities=21% Similarity=0.232 Sum_probs=21.2
Q ss_pred ccEEEEEcCCCCChHHHHHhhhcC
Q 030233 17 RIKLLMVGLDASGKTTILYKMKLG 40 (181)
Q Consensus 17 ~~~i~~~G~~~~GKssl~~~~~~~ 40 (181)
.+.|++.|.+||||||+.+.+...
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 568999999999999999998753
No 433
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.51 E-value=0.0018 Score=46.41 Aligned_cols=24 Identities=17% Similarity=-0.017 Sum_probs=20.1
Q ss_pred ccEEEEEcCCCCChHHHHHhhhcC
Q 030233 17 RIKLLMVGLDASGKTTILYKMKLG 40 (181)
Q Consensus 17 ~~~i~~~G~~~~GKssl~~~~~~~ 40 (181)
+.-+++.|+||+|||+++..++..
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 345778899999999999999754
No 434
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.50 E-value=0.0018 Score=44.81 Aligned_cols=25 Identities=24% Similarity=0.288 Sum_probs=21.8
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhc
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKL 39 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~ 39 (181)
.+...|+++|.+|+||||+.+.+..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4456899999999999999998875
No 435
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.49 E-value=0.0016 Score=50.75 Aligned_cols=23 Identities=22% Similarity=0.218 Sum_probs=20.9
Q ss_pred EEEEEcCCCCChHHHHHhhhcCC
Q 030233 19 KLLMVGLDASGKTTILYKMKLGE 41 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~~~ 41 (181)
.++++|++|+|||||++.++|-.
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998854
No 436
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.49 E-value=0.001 Score=47.69 Aligned_cols=24 Identities=13% Similarity=0.170 Sum_probs=17.9
Q ss_pred CccEEEEEcCCCCChHHHHHhhhc
Q 030233 16 CRIKLLMVGLDASGKTTILYKMKL 39 (181)
Q Consensus 16 ~~~~i~~~G~~~~GKssl~~~~~~ 39 (181)
+.+.|++.|++||||||+.+.|..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999998864
No 437
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.49 E-value=0.0014 Score=50.27 Aligned_cols=22 Identities=18% Similarity=0.268 Sum_probs=19.7
Q ss_pred cEEEEEcCCCCChHHHHHhhhc
Q 030233 18 IKLLMVGLDASGKTTILYKMKL 39 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~ 39 (181)
-.++++|++|+|||||++.+++
T Consensus 30 e~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhc
Confidence 4579999999999999999976
No 438
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.47 E-value=0.0027 Score=48.05 Aligned_cols=24 Identities=25% Similarity=0.202 Sum_probs=21.2
Q ss_pred ccEEEEEcCCCCChHHHHHhhhcC
Q 030233 17 RIKLLMVGLDASGKTTILYKMKLG 40 (181)
Q Consensus 17 ~~~i~~~G~~~~GKssl~~~~~~~ 40 (181)
+--|++.|+||+|||+|+..+++.
T Consensus 215 prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCeeEEECcCCCCHHHHHHHHHHH
Confidence 446999999999999999999864
No 439
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.47 E-value=0.0012 Score=47.99 Aligned_cols=22 Identities=32% Similarity=0.410 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChHHHHHhhhcC
Q 030233 19 KLLMVGLDASGKTTILYKMKLG 40 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~~ 40 (181)
-++++|..|+|||||++.+.+.
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEEecCCCCHHHHHHHHHhh
Confidence 4789999999999999999965
No 440
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.47 E-value=0.0027 Score=46.39 Aligned_cols=23 Identities=22% Similarity=0.385 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCChHHHHHhhhcC
Q 030233 18 IKLLMVGLDASGKTTILYKMKLG 40 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~~ 40 (181)
..+++.|++|+|||++++.+++.
T Consensus 59 ~~~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 34999999999999999998764
No 441
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.46 E-value=0.0015 Score=46.72 Aligned_cols=24 Identities=25% Similarity=0.301 Sum_probs=21.2
Q ss_pred ccEEEEEcCCCCChHHHHHhhhcC
Q 030233 17 RIKLLMVGLDASGKTTILYKMKLG 40 (181)
Q Consensus 17 ~~~i~~~G~~~~GKssl~~~~~~~ 40 (181)
.-.+++.|++|+|||++++.+++.
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 457899999999999999999764
No 442
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.46 E-value=0.0029 Score=45.44 Aligned_cols=24 Identities=21% Similarity=0.217 Sum_probs=21.0
Q ss_pred ccEEEEEcCCCCChHHHHHhhhcC
Q 030233 17 RIKLLMVGLDASGKTTILYKMKLG 40 (181)
Q Consensus 17 ~~~i~~~G~~~~GKssl~~~~~~~ 40 (181)
.-.+++.|++|+|||++++.+++.
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CceEEEECCCCcCHHHHHHHHHHH
Confidence 346899999999999999999864
No 443
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=96.45 E-value=0.0017 Score=51.15 Aligned_cols=23 Identities=30% Similarity=0.286 Sum_probs=20.9
Q ss_pred EEEEEcCCCCChHHHHHhhhcCC
Q 030233 19 KLLMVGLDASGKTTILYKMKLGE 41 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~~~ 41 (181)
.++++|++|+|||||++.+++-.
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhcc
Confidence 68999999999999999998754
No 444
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=96.44 E-value=0.0016 Score=49.39 Aligned_cols=26 Identities=15% Similarity=0.070 Sum_probs=22.4
Q ss_pred CccEEEEEcCCCCChHHHHHhhhcCC
Q 030233 16 CRIKLLMVGLDASGKTTILYKMKLGE 41 (181)
Q Consensus 16 ~~~~i~~~G~~~~GKssl~~~~~~~~ 41 (181)
+-=+++++|++|+|||||++.+++..
T Consensus 156 ~Gq~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 156 RGQRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 34578999999999999999998764
No 445
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.44 E-value=0.023 Score=41.23 Aligned_cols=24 Identities=25% Similarity=0.267 Sum_probs=20.7
Q ss_pred ccEEEEEcCCCCChHHHHHhhhcC
Q 030233 17 RIKLLMVGLDASGKTTILYKMKLG 40 (181)
Q Consensus 17 ~~~i~~~G~~~~GKssl~~~~~~~ 40 (181)
...+++.|++|+|||++++.++..
T Consensus 55 ~~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 55 LDHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 346899999999999999999654
No 446
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.44 E-value=0.0015 Score=48.50 Aligned_cols=23 Identities=30% Similarity=0.226 Sum_probs=20.4
Q ss_pred ccEEEEEcCCCCChHHHHHhhhc
Q 030233 17 RIKLLMVGLDASGKTTILYKMKL 39 (181)
Q Consensus 17 ~~~i~~~G~~~~GKssl~~~~~~ 39 (181)
.-.++++|++|+|||||++.+++
T Consensus 169 ~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 169 KRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 34789999999999999999985
No 447
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.43 E-value=0.002 Score=47.05 Aligned_cols=22 Identities=27% Similarity=0.434 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChHHHHHhhhcC
Q 030233 19 KLLMVGLDASGKTTILYKMKLG 40 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~~ 40 (181)
.+++.|++|+||||+++.+++.
T Consensus 48 ~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999998764
No 448
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.42 E-value=0.002 Score=46.11 Aligned_cols=22 Identities=27% Similarity=0.315 Sum_probs=19.9
Q ss_pred cEEEEEcCCCCChHHHHHhhhc
Q 030233 18 IKLLMVGLDASGKTTILYKMKL 39 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~ 39 (181)
..|++.|.+||||||+.+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999999975
No 449
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.42 E-value=0.0022 Score=43.18 Aligned_cols=21 Identities=24% Similarity=0.366 Sum_probs=19.3
Q ss_pred EEEEEcCCCCChHHHHHhhhc
Q 030233 19 KLLMVGLDASGKTTILYKMKL 39 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~ 39 (181)
.|++.|.+||||||+.+.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998865
No 450
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.41 E-value=0.0017 Score=45.36 Aligned_cols=23 Identities=22% Similarity=0.255 Sum_probs=20.3
Q ss_pred ccEEEEEcCCCCChHHHHHhhhc
Q 030233 17 RIKLLMVGLDASGKTTILYKMKL 39 (181)
Q Consensus 17 ~~~i~~~G~~~~GKssl~~~~~~ 39 (181)
.-.+++.|++|+|||++++.++.
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 34589999999999999999975
No 451
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.41 E-value=0.0023 Score=44.20 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=20.2
Q ss_pred ccEEEEEcCCCCChHHHHHhhhc
Q 030233 17 RIKLLMVGLDASGKTTILYKMKL 39 (181)
Q Consensus 17 ~~~i~~~G~~~~GKssl~~~~~~ 39 (181)
.++++++|++||||||+..+++.
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHH
T ss_pred ccceeeECCCCCCHHHHHHHHHH
Confidence 57899999999999999998864
No 452
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.38 E-value=0.0023 Score=45.95 Aligned_cols=24 Identities=29% Similarity=0.372 Sum_probs=20.3
Q ss_pred CccEEEEEcCCCCChHHHHHhhhc
Q 030233 16 CRIKLLMVGLDASGKTTILYKMKL 39 (181)
Q Consensus 16 ~~~~i~~~G~~~~GKssl~~~~~~ 39 (181)
....+++.|++|+|||++++.++.
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 445799999999999999987754
No 453
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.36 E-value=0.0024 Score=50.44 Aligned_cols=25 Identities=28% Similarity=0.238 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCChHHHHHhhhcCCc
Q 030233 18 IKLLMVGLDASGKTTILYKMKLGEI 42 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~~~~ 42 (181)
=.++++|++|+|||||++.++|-..
T Consensus 104 ei~~LvGpNGaGKSTLLkiL~Gll~ 128 (608)
T 3j16_B 104 QVLGLVGTNGIGKSTALKILAGKQK 128 (608)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCChHHHHHHHHhcCCC
Confidence 3689999999999999999988543
No 454
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.35 E-value=0.0022 Score=47.44 Aligned_cols=22 Identities=27% Similarity=0.300 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChHHHHHhhhcC
Q 030233 19 KLLMVGLDASGKTTILYKMKLG 40 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~~ 40 (181)
.+++.|++|+|||++++.+++.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999998754
No 455
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.35 E-value=0.002 Score=44.09 Aligned_cols=21 Identities=29% Similarity=0.346 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChHHHHHhhhc
Q 030233 19 KLLMVGLDASGKTTILYKMKL 39 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~ 39 (181)
.+++.|++|+|||+++..++.
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998865
No 456
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=96.34 E-value=0.0027 Score=49.97 Aligned_cols=23 Identities=30% Similarity=0.280 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChHHHHHhhhcCC
Q 030233 19 KLLMVGLDASGKTTILYKMKLGE 41 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~~~ 41 (181)
.++++|++|+|||||++.+++-.
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999998754
No 457
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=96.33 E-value=0.0017 Score=51.23 Aligned_cols=23 Identities=30% Similarity=0.260 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChHHHHHhhhcCC
Q 030233 19 KLLMVGLDASGKTTILYKMKLGE 41 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~~~ 41 (181)
.++++|++|+|||||++.+++-.
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCc
Confidence 68999999999999999998754
No 458
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.33 E-value=0.0019 Score=45.86 Aligned_cols=21 Identities=14% Similarity=0.219 Sum_probs=19.2
Q ss_pred EEEEEcCCCCChHHHHHhhhc
Q 030233 19 KLLMVGLDASGKTTILYKMKL 39 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~ 39 (181)
-++++|++|+|||||+..+++
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 579999999999999999875
No 459
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.33 E-value=0.0021 Score=45.24 Aligned_cols=26 Identities=27% Similarity=0.184 Sum_probs=21.7
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhcC
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKLG 40 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~~ 40 (181)
.+...|++.|..||||||+++.+...
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHh
Confidence 34568999999999999999988754
No 460
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.32 E-value=0.0025 Score=40.91 Aligned_cols=19 Identities=32% Similarity=0.585 Sum_probs=17.2
Q ss_pred EEEEcCCCCChHHHHHhhh
Q 030233 20 LLMVGLDASGKTTILYKMK 38 (181)
Q Consensus 20 i~~~G~~~~GKssl~~~~~ 38 (181)
.+++|+.|+||||++..+.
T Consensus 26 ~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5899999999999999875
No 461
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=96.32 E-value=0.0017 Score=51.06 Aligned_cols=23 Identities=22% Similarity=0.352 Sum_probs=20.7
Q ss_pred EEEEEcCCCCChHHHHHhhhcCC
Q 030233 19 KLLMVGLDASGKTTILYKMKLGE 41 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~~~ 41 (181)
.++++|++|+|||||++.+++-.
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 68999999999999999998754
No 462
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=96.32 E-value=0.0031 Score=48.27 Aligned_cols=26 Identities=19% Similarity=0.276 Sum_probs=21.7
Q ss_pred CCccEEEEEcCCCCChHHHHHhhhcC
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMKLG 40 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~~~ 40 (181)
...-+++++|++|+|||++++.++..
T Consensus 199 ~~~~~~LL~G~pG~GKT~la~~la~~ 224 (468)
T 3pxg_A 199 RTKNNPVLIGEPGVGKTAIAEGLAQQ 224 (468)
T ss_dssp SSSCEEEEESCTTTTTHHHHHHHHHH
T ss_pred cCCCCeEEECCCCCCHHHHHHHHHHH
Confidence 34457899999999999999988754
No 463
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.31 E-value=0.0022 Score=43.63 Aligned_cols=24 Identities=29% Similarity=0.372 Sum_probs=20.5
Q ss_pred CccEEEEEcCCCCChHHHHHhhhc
Q 030233 16 CRIKLLMVGLDASGKTTILYKMKL 39 (181)
Q Consensus 16 ~~~~i~~~G~~~~GKssl~~~~~~ 39 (181)
+.+.|++.|.+||||||+.+.+..
T Consensus 2 ~~~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 2 KAINIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp -CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999998865
No 464
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.30 E-value=0.0022 Score=49.97 Aligned_cols=24 Identities=21% Similarity=0.128 Sum_probs=21.1
Q ss_pred EEEEEcCCCCChHHHHHhhhcCCc
Q 030233 19 KLLMVGLDASGKTTILYKMKLGEI 42 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~~~~ 42 (181)
.++++|++|+|||||++.+++-..
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~~ 319 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEIT 319 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 479999999999999999998543
No 465
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.29 E-value=0.0029 Score=45.75 Aligned_cols=24 Identities=25% Similarity=0.209 Sum_probs=20.7
Q ss_pred ccEEEEEcCCCCChHHHHHhhhcC
Q 030233 17 RIKLLMVGLDASGKTTILYKMKLG 40 (181)
Q Consensus 17 ~~~i~~~G~~~~GKssl~~~~~~~ 40 (181)
..-|+++|++|||||+|...++..
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHh
Confidence 446899999999999999999754
No 466
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.29 E-value=0.002 Score=50.90 Aligned_cols=24 Identities=38% Similarity=0.328 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCChHHHHHhhhcCC
Q 030233 18 IKLLMVGLDASGKTTILYKMKLGE 41 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~~~ 41 (181)
=.++++|++|+|||||++.+++-.
T Consensus 382 ~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 382 QKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp CEEEEECCTTSSTTHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCc
Confidence 368999999999999999998754
No 467
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=96.29 E-value=0.0023 Score=47.19 Aligned_cols=24 Identities=42% Similarity=0.562 Sum_probs=21.1
Q ss_pred CCccEEEEEcCCCCChHHHHHhhh
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMK 38 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~ 38 (181)
.+..|++++|.++|||||++.++.
T Consensus 7 ~~~~k~lllG~~~sGKsT~~kq~~ 30 (354)
T 2xtz_A 7 IHIRKLLLLGAGESGKSTIFKQIK 30 (354)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHH
T ss_pred CCceeEEEECCCCCcHHHHHHHHH
Confidence 356899999999999999998874
No 468
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.28 E-value=0.0031 Score=45.80 Aligned_cols=23 Identities=22% Similarity=0.381 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCChHHHHHhhhcC
Q 030233 18 IKLLMVGLDASGKTTILYKMKLG 40 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~~ 40 (181)
..|+++|++||||||+...++..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999988753
No 469
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.28 E-value=0.0047 Score=44.60 Aligned_cols=24 Identities=25% Similarity=0.239 Sum_probs=21.1
Q ss_pred ccEEEEEcCCCCChHHHHHhhhcC
Q 030233 17 RIKLLMVGLDASGKTTILYKMKLG 40 (181)
Q Consensus 17 ~~~i~~~G~~~~GKssl~~~~~~~ 40 (181)
.-.+++.|++|+|||+|+..++..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~ 175 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHE 175 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 467999999999999999988753
No 470
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.27 E-value=0.0032 Score=49.04 Aligned_cols=26 Identities=27% Similarity=0.222 Sum_probs=22.1
Q ss_pred CccEEEEEcCCCCChHHHHHhhhcCC
Q 030233 16 CRIKLLMVGLDASGKTTILYKMKLGE 41 (181)
Q Consensus 16 ~~~~i~~~G~~~~GKssl~~~~~~~~ 41 (181)
+.=-++++|++|+|||||++.++|-.
T Consensus 24 ~Gei~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 24 NNTILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 33468999999999999999998854
No 471
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.26 E-value=0.0032 Score=49.76 Aligned_cols=24 Identities=25% Similarity=0.257 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCChHHHHHhhhcCC
Q 030233 18 IKLLMVGLDASGKTTILYKMKLGE 41 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~~~ 41 (181)
=.++++|++|+|||||++.++|-.
T Consensus 118 e~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 118 MVVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCChHHHHHHHHhCCC
Confidence 358999999999999999998854
No 472
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.26 E-value=0.0022 Score=46.51 Aligned_cols=23 Identities=22% Similarity=0.255 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCChHHHHHhhhcC
Q 030233 18 IKLLMVGLDASGKTTILYKMKLG 40 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~~ 40 (181)
-.+++.|++|+|||+|++.+++.
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 45899999999999999998754
No 473
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.23 E-value=0.0022 Score=50.46 Aligned_cols=23 Identities=22% Similarity=0.247 Sum_probs=20.7
Q ss_pred EEEEEcCCCCChHHHHHhhhcCC
Q 030233 19 KLLMVGLDASGKTTILYKMKLGE 41 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~~~ 41 (181)
.++++|++|+|||||++.+++-.
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 68999999999999999998754
No 474
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.22 E-value=0.0031 Score=42.49 Aligned_cols=25 Identities=16% Similarity=0.267 Sum_probs=21.5
Q ss_pred ccEEEEEcCCCCChHHHHHhhhcCC
Q 030233 17 RIKLLMVGLDASGKTTILYKMKLGE 41 (181)
Q Consensus 17 ~~~i~~~G~~~~GKssl~~~~~~~~ 41 (181)
..-|+++|++|+|||+|...++..-
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhC
Confidence 4568999999999999999997653
No 475
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.22 E-value=0.0036 Score=46.23 Aligned_cols=24 Identities=25% Similarity=0.322 Sum_probs=20.9
Q ss_pred ccEEEEEcCCCCChHHHHHhhhcC
Q 030233 17 RIKLLMVGLDASGKTTILYKMKLG 40 (181)
Q Consensus 17 ~~~i~~~G~~~~GKssl~~~~~~~ 40 (181)
.-.+++.|++|+|||++++.++..
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~ 68 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNE 68 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH
Confidence 447999999999999999998753
No 476
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.21 E-value=0.0039 Score=46.99 Aligned_cols=25 Identities=20% Similarity=0.329 Sum_probs=21.3
Q ss_pred CccEEEEEcCCCCChHHHHHhhhcC
Q 030233 16 CRIKLLMVGLDASGKTTILYKMKLG 40 (181)
Q Consensus 16 ~~~~i~~~G~~~~GKssl~~~~~~~ 40 (181)
...-|+++|.+||||||+.++++..
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 4456899999999999999998753
No 477
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.20 E-value=0.0024 Score=45.85 Aligned_cols=23 Identities=30% Similarity=0.430 Sum_probs=19.9
Q ss_pred ccEEEEEcCCCCChHHHHHhhhc
Q 030233 17 RIKLLMVGLDASGKTTILYKMKL 39 (181)
Q Consensus 17 ~~~i~~~G~~~~GKssl~~~~~~ 39 (181)
.-.++++|++|+||||++..+++
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~ 127 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAA 127 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 44789999999999999988864
No 478
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=96.20 E-value=0.0032 Score=41.73 Aligned_cols=21 Identities=24% Similarity=0.207 Sum_probs=19.2
Q ss_pred EEEEcCCCCChHHHHHhhhcC
Q 030233 20 LLMVGLDASGKTTILYKMKLG 40 (181)
Q Consensus 20 i~~~G~~~~GKssl~~~~~~~ 40 (181)
++|+|.++||||+|..+++..
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 689999999999999999854
No 479
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=96.20 E-value=0.0085 Score=45.50 Aligned_cols=24 Identities=17% Similarity=0.166 Sum_probs=19.7
Q ss_pred CCccEEEEEcCCCCChHHHHHhhh
Q 030233 15 QCRIKLLMVGLDASGKTTILYKMK 38 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~~ 38 (181)
..-.-|.|+|+.++|||+|+|.++
T Consensus 65 ~~v~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 65 KEVVAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHH
T ss_pred CceEEEEEECCCCCchhHHHHHHH
Confidence 344568899999999999999554
No 480
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.18 E-value=0.0039 Score=48.60 Aligned_cols=24 Identities=29% Similarity=0.245 Sum_probs=21.4
Q ss_pred EEEEEcCCCCChHHHHHhhhcCCc
Q 030233 19 KLLMVGLDASGKTTILYKMKLGEI 42 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~~~~ 42 (181)
.++++|+.|+|||||++.++|-..
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl~~ 337 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGVEE 337 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 579999999999999999998653
No 481
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.15 E-value=0.0028 Score=45.71 Aligned_cols=22 Identities=32% Similarity=0.508 Sum_probs=19.5
Q ss_pred cEEEEEcCCCCChHHHHHhhhc
Q 030233 18 IKLLMVGLDASGKTTILYKMKL 39 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~ 39 (181)
-.++++|++|+||||++..+++
T Consensus 105 ~vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHHH
Confidence 3589999999999999998875
No 482
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.15 E-value=0.0028 Score=46.08 Aligned_cols=23 Identities=17% Similarity=0.283 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCChHHHHHhhhcC
Q 030233 18 IKLLMVGLDASGKTTILYKMKLG 40 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~~ 40 (181)
-.+++.|++|+|||++++.++..
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHHHHH
Confidence 46999999999999999999864
No 483
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.14 E-value=0.0031 Score=43.60 Aligned_cols=21 Identities=24% Similarity=0.297 Sum_probs=18.2
Q ss_pred EEEEEcCCCCChHHHHHhhhc
Q 030233 19 KLLMVGLDASGKTTILYKMKL 39 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~ 39 (181)
-++++|++|+|||||+..++.
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 479999999999999887754
No 484
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=96.14 E-value=0.0032 Score=43.43 Aligned_cols=24 Identities=29% Similarity=0.203 Sum_probs=18.0
Q ss_pred CccEEEEEcCCCCChHHHHHhhhc
Q 030233 16 CRIKLLMVGLDASGKTTILYKMKL 39 (181)
Q Consensus 16 ~~~~i~~~G~~~~GKssl~~~~~~ 39 (181)
+..-|.+.|++|+||||+++.+..
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~ 47 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCD 47 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999998864
No 485
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.13 E-value=0.0022 Score=47.35 Aligned_cols=25 Identities=24% Similarity=0.263 Sum_probs=21.3
Q ss_pred CccEEEEEcCCCCChHHHHHhhhcC
Q 030233 16 CRIKLLMVGLDASGKTTILYKMKLG 40 (181)
Q Consensus 16 ~~~~i~~~G~~~~GKssl~~~~~~~ 40 (181)
..-.+++.|++|+|||++++.++..
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999998754
No 486
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.13 E-value=0.0029 Score=45.27 Aligned_cols=23 Identities=30% Similarity=0.465 Sum_probs=20.3
Q ss_pred ccEEEEEcCCCCChHHHHHhhhc
Q 030233 17 RIKLLMVGLDASGKTTILYKMKL 39 (181)
Q Consensus 17 ~~~i~~~G~~~~GKssl~~~~~~ 39 (181)
...+++.|++|+|||++++.++.
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999999875
No 487
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.11 E-value=0.0043 Score=49.02 Aligned_cols=25 Identities=28% Similarity=0.211 Sum_probs=21.7
Q ss_pred EEEEEcCCCCChHHHHHhhhcCCcc
Q 030233 19 KLLMVGLDASGKTTILYKMKLGEIV 43 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~~~~~ 43 (181)
.++++|++|+|||||++.++|-..+
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~~p 408 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVEEP 408 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 5799999999999999999986533
No 488
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.11 E-value=0.0023 Score=47.20 Aligned_cols=24 Identities=21% Similarity=0.343 Sum_probs=20.9
Q ss_pred ccEEEEEcCCCCChHHHHHhhhcC
Q 030233 17 RIKLLMVGLDASGKTTILYKMKLG 40 (181)
Q Consensus 17 ~~~i~~~G~~~~GKssl~~~~~~~ 40 (181)
.-.+++.|++|+|||||++.+++.
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 446899999999999999998763
No 489
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=96.11 E-value=0.0036 Score=46.88 Aligned_cols=23 Identities=39% Similarity=0.666 Sum_probs=20.8
Q ss_pred CCccEEEEEcCCCCChHHHHHhh
Q 030233 15 QCRIKLLMVGLDASGKTTILYKM 37 (181)
Q Consensus 15 ~~~~~i~~~G~~~~GKssl~~~~ 37 (181)
.+.+|++++|...|||||++.++
T Consensus 38 ~~~~klLLLG~geSGKSTi~KQm 60 (402)
T 1azs_C 38 RATHRLLLLGAGESGKSTIVKQM 60 (402)
T ss_dssp TTEEEEEEEESTTSSHHHHHHHH
T ss_pred hccceEEEecCCCCchhhHHHHH
Confidence 35799999999999999999877
No 490
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=96.11 E-value=0.0032 Score=46.59 Aligned_cols=19 Identities=16% Similarity=0.447 Sum_probs=17.4
Q ss_pred EEEEcCCCCChHHHHHhhh
Q 030233 20 LLMVGLDASGKTTILYKMK 38 (181)
Q Consensus 20 i~~~G~~~~GKssl~~~~~ 38 (181)
.+++|+.|+|||||++.++
T Consensus 26 ~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5699999999999999986
No 491
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=96.11 E-value=0.027 Score=40.51 Aligned_cols=22 Identities=32% Similarity=0.357 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCChHHHHHhhhc
Q 030233 18 IKLLMVGLDASGKTTILYKMKL 39 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~ 39 (181)
..+++.|++|+|||++++.+..
T Consensus 39 ~~vll~G~~GtGKT~la~~i~~ 60 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAHVIAH 60 (324)
T ss_dssp CCCEEECCTTCCCHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 5689999999999999999865
No 492
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.09 E-value=0.0034 Score=45.06 Aligned_cols=22 Identities=23% Similarity=0.383 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChHHHHHhhhcC
Q 030233 19 KLLMVGLDASGKTTILYKMKLG 40 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~~ 40 (181)
.+++.|++|+|||++++.+.+.
T Consensus 49 ~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEESCSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHHH
Confidence 6999999999999999998764
No 493
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.08 E-value=0.0033 Score=49.67 Aligned_cols=24 Identities=29% Similarity=0.386 Sum_probs=21.2
Q ss_pred EEEEcCCCCChHHHHHhhhcCCcc
Q 030233 20 LLMVGLDASGKTTILYKMKLGEIV 43 (181)
Q Consensus 20 i~~~G~~~~GKssl~~~~~~~~~~ 43 (181)
++++|++|+|||||++.++|-..+
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~~p 404 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGALKP 404 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSSCC
T ss_pred EEEECCCCCcHHHHHHHHhcCCCC
Confidence 799999999999999999986543
No 494
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.04 E-value=0.0037 Score=45.73 Aligned_cols=22 Identities=32% Similarity=0.468 Sum_probs=19.7
Q ss_pred cEEEEEcCCCCChHHHHHhhhc
Q 030233 18 IKLLMVGLDASGKTTILYKMKL 39 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~ 39 (181)
..|+++|++|||||||...++.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 4689999999999999998875
No 495
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.03 E-value=0.0032 Score=46.29 Aligned_cols=23 Identities=22% Similarity=0.119 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChHHHHHhhhcCC
Q 030233 19 KLLMVGLDASGKTTILYKMKLGE 41 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~~~ 41 (181)
-+.++|++|+|||||+..+++..
T Consensus 133 i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57999999999999999998753
No 496
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.03 E-value=0.0037 Score=45.32 Aligned_cols=24 Identities=17% Similarity=0.260 Sum_probs=20.9
Q ss_pred ccEEEEEcCCCCChHHHHHhhhcC
Q 030233 17 RIKLLMVGLDASGKTTILYKMKLG 40 (181)
Q Consensus 17 ~~~i~~~G~~~~GKssl~~~~~~~ 40 (181)
...+++.|++|+|||+++..++..
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 346999999999999999999754
No 497
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.99 E-value=0.0056 Score=45.03 Aligned_cols=22 Identities=32% Similarity=0.434 Sum_probs=19.9
Q ss_pred cEEEEEcCCCCChHHHHHhhhc
Q 030233 18 IKLLMVGLDASGKTTILYKMKL 39 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~ 39 (181)
-.+++.|++|+|||+++..++.
T Consensus 71 ~~vLl~GppGtGKT~la~~la~ 92 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQ 92 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999875
No 498
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.97 E-value=0.005 Score=42.64 Aligned_cols=24 Identities=25% Similarity=0.213 Sum_probs=20.6
Q ss_pred ccEEEEEcCCCCChHHHHHhhhcC
Q 030233 17 RIKLLMVGLDASGKTTILYKMKLG 40 (181)
Q Consensus 17 ~~~i~~~G~~~~GKssl~~~~~~~ 40 (181)
...|++.|..||||||+++.+...
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 356899999999999999998753
No 499
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=95.94 E-value=0.0075 Score=45.89 Aligned_cols=23 Identities=22% Similarity=0.251 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCChHHHHHhhhcC
Q 030233 18 IKLLMVGLDASGKTTILYKMKLG 40 (181)
Q Consensus 18 ~~i~~~G~~~~GKssl~~~~~~~ 40 (181)
..+++.|++|+|||++++.+.+.
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~ 73 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARY 73 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHHHHHH
Confidence 47999999999999999999764
No 500
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=95.90 E-value=0.007 Score=43.42 Aligned_cols=22 Identities=27% Similarity=0.382 Sum_probs=19.6
Q ss_pred EEEEEcCCCCChHHHHHhhhcC
Q 030233 19 KLLMVGLDASGKTTILYKMKLG 40 (181)
Q Consensus 19 ~i~~~G~~~~GKssl~~~~~~~ 40 (181)
.+++.|++|+|||+++..++..
T Consensus 40 ~~ll~G~~G~GKt~la~~l~~~ 61 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIALARD 61 (319)
T ss_dssp CEEEESSSSSSHHHHHHHHHHH
T ss_pred eEEEECcCCcCHHHHHHHHHHH
Confidence 4999999999999999988754
Done!