BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030234
(181 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1AKY|A Chain A, High-Resolution Structures Of Adenylate Kinase From Yeast
Ligated With Inhibitor Ap5a, Showing The Pathway Of
Phosphoryl Transfer
pdb|2AKY|A Chain A, High-Resolution Structures Of Adenylate Kinase From Yeast
Ligated With Inhibitor Ap5a, Showing The Pathway Of
Phosphoryl Transfer
Length = 220
Score = 199 bits (507), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 96/181 (53%), Positives = 128/181 (70%), Gaps = 1/181 (0%)
Query: 1 MLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGII-DEAMKKPSCQKGFILDGFPRTEVQ 59
MLR+ +A T LG++AK+ MD+G LVSDD++V +I DE P+C+ GFILDGFPRT Q
Sbjct: 38 MLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMVNMIKDELTNNPACKNGFILDGFPRTIPQ 97
Query: 60 AQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDV 119
A+KLD+ML++QG ++K + +DD +L RITGR IHP+SGR+YH F PPK DDV
Sbjct: 98 AEKLDQMLKEQGTPLEKAIELKVDDELLVARITGRLIHPASGRSYHKIFNPPKEDMKDDV 157
Query: 120 TGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKAL 179
TGE L+QR DD A LK RL A+H QTEP++D+Y K GI A + A +PP V +++ L
Sbjct: 158 TGEALVQRSDDNADALKKRLAAYHAQTEPIVDFYKKTGIWAGVDASQPPATVWADILNKL 217
Query: 180 S 180
Sbjct: 218 G 218
>pdb|1AK2|A Chain A, Adenylate Kinase Isoenzyme-2
pdb|2AK2|A Chain A, Adenylate Kinase Isoenzyme-2
Length = 233
Score = 199 bits (507), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 93/180 (51%), Positives = 131/180 (72%)
Query: 1 MLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQA 60
MLRA VA+ + LG K K MD G+LVSD++V+ +I++ ++ P C+ GF+LDGFPRT QA
Sbjct: 50 MLRAMVASGSELGKKLKATMDAGKLVSDEMVLELIEKNLETPPCKNGFLLDGFPRTVRQA 109
Query: 61 QKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVT 120
+ LD+++EK+ +K+D V+ F+I D++L RITGR IHP SGR+YH +F PPK P DD+T
Sbjct: 110 EMLDDLMEKRKEKLDSVIEFSIPDSLLIRRITGRLIHPQSGRSYHEEFNPPKEPMKDDIT 169
Query: 121 GEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 180
GEPLI+R DD LK RLEA+H QT P+++YYSK+GI + + A + P V + + A S
Sbjct: 170 GEPLIRRSDDNKKALKIRLEAYHTQTTPLVEYYSKRGIHSAIDASQTPDVVFASILAAFS 229
>pdb|3AKY|A Chain A, Stability, Activity And Structure Of Adenylate Kinase
Mutants
Length = 220
Score = 198 bits (504), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 96/181 (53%), Positives = 127/181 (70%), Gaps = 1/181 (0%)
Query: 1 MLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGII-DEAMKKPSCQKGFILDGFPRTEVQ 59
MLR+ +A T LG++AK+ MD+G LVSDD++V +I DE P+C+ GFILDGFPRT Q
Sbjct: 38 MLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMVNMIKDELTNNPACKNGFILDGFPRTIPQ 97
Query: 60 AQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDV 119
A+KLD+ML++QG ++K + +DD +L RITGR IHP+SGR+YH F PPK DDV
Sbjct: 98 AEKLDQMLKEQGTPLEKAIELKVDDELLVARITGRLIHPASGRSYHKIFNPPKEDMKDDV 157
Query: 120 TGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKAL 179
TGE L+QR DD A LK RL A+H QTEP++D+Y K GI A + A +PP V ++ L
Sbjct: 158 TGEALVQRSDDNADALKKRLAAYHAQTEPIVDFYKKTGIWAGVDASQPPATVWADFLNKL 217
Query: 180 S 180
Sbjct: 218 G 218
>pdb|2C9Y|A Chain A, Structure Of Human Adenylate Kinase 2
Length = 242
Score = 198 bits (503), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 93/180 (51%), Positives = 130/180 (72%)
Query: 1 MLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQA 60
MLRA VA+ + LG K K MD G+LVSD++VV +I++ ++ P C+ GF+LDGFPRT QA
Sbjct: 50 MLRAMVASGSELGKKLKATMDAGKLVSDEMVVELIEKNLETPLCKNGFLLDGFPRTVRQA 109
Query: 61 QKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVT 120
+ LD+++EK+ +K+D V+ F+I D++L RITGR IHP SGR+YH +F PPK P DD+T
Sbjct: 110 EMLDDLMEKRKEKLDSVIEFSIPDSLLIRRITGRLIHPKSGRSYHEEFNPPKEPMKDDIT 169
Query: 121 GEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 180
GEPLI+R DD LK RL+A+H QT P+I+YY K+GI + + A + P V + + A S
Sbjct: 170 GEPLIRRSDDNEKALKIRLQAYHTQTTPLIEYYRKRGIHSAIDASQTPDVVFASILAAFS 229
>pdb|1DVR|A Chain A, Structure Of A Mutant Adenylate Kinase Ligated With An
Atp- Analogue Showing Domain Closure Over Atp
pdb|1DVR|B Chain B, Structure Of A Mutant Adenylate Kinase Ligated With An
Atp- Analogue Showing Domain Closure Over Atp
Length = 220
Score = 192 bits (488), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 94/181 (51%), Positives = 126/181 (69%), Gaps = 1/181 (0%)
Query: 1 MLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGII-DEAMKKPSCQKGFILDGFPRTEVQ 59
MLR+ +A T LG++AK+ MD+G LVSDD++V +I DE P+C+ GFIL GFPRT Q
Sbjct: 38 MLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMVNMIKDELTNNPACKNGFILVGFPRTIPQ 97
Query: 60 AQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDV 119
A+KLD+ML++QG ++K + +DD +L RITGR IHP+SGR+YH F PPK DDV
Sbjct: 98 AEKLDQMLKEQGTPLEKAIELKVDDELLVARITGRLIHPASGRSYHKIFNPPKEDMKDDV 157
Query: 120 TGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKAL 179
TGE L+Q DD A LK RL A+H QTEP++D+Y K GI A + A +PP V +++ L
Sbjct: 158 TGEALVQISDDNADALKKRLAAYHAQTEPIVDFYKKTGIWAGVDASQPPATVWADILNKL 217
Query: 180 S 180
Sbjct: 218 G 218
>pdb|3BE4|A Chain A, Crystal Structure Of Cryptosporidium Parvum Adenylate
Kinase Cgd5_3360
Length = 217
Score = 186 bits (471), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 84/179 (46%), Positives = 123/179 (68%)
Query: 1 MLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQA 60
MLR A+ T +G++AK ++ G V D++V+G++ E C GF+LDGFPRT QA
Sbjct: 39 MLREAIKNGTKIGLEAKSIIESGNFVGDEIVLGLVKEKFDLGVCVNGFVLDGFPRTIPQA 98
Query: 61 QKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVT 120
+ L ++L + G + V+ F IDD+ + ERI+GR HP+SGR YH K+ PPK PG+DDVT
Sbjct: 99 EGLAKILSEIGDSLTSVIYFEIDDSEIIERISGRCTHPASGRIYHVKYNPPKQPGIDDVT 158
Query: 121 GEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKAL 179
GEPL+ R DD A +K RL+ FHKQT P++ +Y GI+ +++A+ PP+EVT +++K L
Sbjct: 159 GEPLVWRDDDNAEAVKVRLDVFHKQTAPLVKFYEDLGILKRVNAKLPPKEVTEQIKKIL 217
>pdb|3TLX|A Chain A, Crystal Structure Of Pf10_0086, Adenylate Kinase From
Plasmodium Falciparum
pdb|3TLX|B Chain B, Crystal Structure Of Pf10_0086, Adenylate Kinase From
Plasmodium Falciparum
pdb|3TLX|C Chain C, Crystal Structure Of Pf10_0086, Adenylate Kinase From
Plasmodium Falciparum
pdb|3TLX|D Chain D, Crystal Structure Of Pf10_0086, Adenylate Kinase From
Plasmodium Falciparum
Length = 243
Score = 181 bits (459), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 84/181 (46%), Positives = 117/181 (64%)
Query: 1 MLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQA 60
+LR A KT LG+K K +++G+LV D +V+ ++DE +K P C+KGFILDG+PR QA
Sbjct: 63 LLREAAEKKTELGLKIKNIINEGKLVDDQMVLSLVDEKLKTPQCKKGFILDGYPRNVKQA 122
Query: 61 QKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVT 120
+ L+++L+K K+D V F + D VL RI+GR IH SGR YH F PPKVP DDVT
Sbjct: 123 EDLNKLLQKNQTKLDGVFYFNVPDEVLVNRISGRLIHKPSGRIYHKIFNPPKVPFRDDVT 182
Query: 121 GEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 180
EPLIQR+DD VLK RL F +T P+I YY K ++ L A +P ++ ++ + +
Sbjct: 183 NEPLIQREDDNEDVLKKRLTVFKSETSPLISYYKNKNLLINLDATQPANDLEKKISQHID 242
Query: 181 A 181
Sbjct: 243 G 243
>pdb|3FB4|A Chain A, Crystal Structure Of Adenylate Kinase From Marinibacillus
Marinus
Length = 216
Score = 173 bits (438), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 82/181 (45%), Positives = 116/181 (64%)
Query: 1 MLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQA 60
M RAA+ T LG+KAK MD+G LV D++ +GI+ E + K CQKGF+LDGFPRT QA
Sbjct: 34 MFRAAIKNGTELGLKAKSFMDQGNLVPDEVTIGIVHERLSKDDCQKGFLLDGFPRTVAQA 93
Query: 61 QKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVT 120
LD +L GKK+D VLN ++ L +R+TGRWI + G TYHT F PP V G+ D
Sbjct: 94 DALDSLLTDLGKKLDYVLNIKVEQEELMKRLTGRWICKTCGATYHTIFNPPAVEGICDKD 153
Query: 121 GEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 180
G L QR DD +K+RL+ KQT+P++D+YS+KG++ + ++ ++V ++ L
Sbjct: 154 GGELYQRIDDKPETVKNRLDVNMKQTQPLLDFYSQKGVLKDIDGQQDIKKVFVDINDLLG 213
Query: 181 A 181
Sbjct: 214 G 214
>pdb|1ZIN|A Chain A, Adenylate Kinase With Bound Ap5a
pdb|1ZIO|A Chain A, Phosphotransferase
pdb|1ZIP|A Chain A, Bacillus Stearothermophilus Adenylate Kinase
Length = 217
Score = 168 bits (425), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 79/181 (43%), Positives = 118/181 (65%)
Query: 1 MLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQA 60
M RAA+ TPLG++AK+ MD+G+LV D++ +GI+ E + K CQ GF+LDGFPRT QA
Sbjct: 34 MFRAAMKEGTPLGLQAKQYMDRGDLVPDEVTIGIVRERLSKDDCQNGFLLDGFPRTVAQA 93
Query: 61 QKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVT 120
+ L+ ML G+K+D V++ + VL ER+TGR I + G TYH F PP PGV D
Sbjct: 94 EALETMLADIGRKLDYVIHIDVRQDVLMERLTGRRICRNCGATYHLIFHPPAKPGVCDKC 153
Query: 121 GEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 180
G L QR DD A + +RLE KQ +P++D+Y +KG + ++ E+ ++V +++++ L
Sbjct: 154 GGELYQRADDNEATVANRLEVNMKQMKPLVDFYEQKGYLRNINGEQDMEKVFADIRELLG 213
Query: 181 A 181
Sbjct: 214 G 214
>pdb|2OSB|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (q16l/q199r/)
pdb|2OSB|B Chain B, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (q16l/q199r/)
Length = 216
Score = 168 bits (425), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 85/181 (46%), Positives = 122/181 (67%)
Query: 1 MLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQA 60
M RAA+ +TPLG++AK +DKGELV D++ +GI+ E + K C++GF+LDGFPRT QA
Sbjct: 34 MFRAAMKEETPLGLEAKSYIDKGELVPDEVTIGIVKERLGKDDCERGFLLDGFPRTVAQA 93
Query: 61 QKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVT 120
+ L+E+LE+ GK +D V+N +D VL ER+TGR I G TYH F PPK PG+ D
Sbjct: 94 EALEEILEEYGKPIDYVINIEVDKDVLMERLTGRRICSVCGTTYHLVFNPPKTPGICDKD 153
Query: 121 GEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 180
G L QR DD + RLE KQT+P++D+YS+KG +A ++ ++ Q+V ++V+ L
Sbjct: 154 GGELYQRADDNEETVSKRLEVNMKQTQPLLDFYSEKGYLANVNGQRDIQDVYADVKDLLG 213
Query: 181 A 181
Sbjct: 214 G 214
>pdb|2EU8|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (Q199r)
pdb|2EU8|B Chain B, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (Q199r)
Length = 216
Score = 167 bits (424), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 85/181 (46%), Positives = 122/181 (67%)
Query: 1 MLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQA 60
M RAA+ +TPLG++AK +DKGELV D++ +GI+ E + K C++GF+LDGFPRT QA
Sbjct: 34 MFRAAMKEETPLGLEAKSYIDKGELVPDEVTIGIVKERLGKDDCERGFLLDGFPRTVAQA 93
Query: 61 QKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVT 120
+ L+E+LE+ GK +D V+N +D VL ER+TGR I G TYH F PPK PG+ D
Sbjct: 94 EALEEILEEYGKPIDYVINIEVDKDVLMERLTGRRICSVCGTTYHLVFNPPKTPGICDKD 153
Query: 121 GEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 180
G L QR DD + RLE KQT+P++D+YS+KG +A ++ ++ Q+V ++V+ L
Sbjct: 154 GGELYQRADDNEETVSKRLEVNMKQTQPLLDFYSEKGYLANVNGQRDIQDVYADVKDLLG 213
Query: 181 A 181
Sbjct: 214 G 214
>pdb|2QAJ|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (Q199rG213E)
pdb|2QAJ|B Chain B, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (Q199rG213E)
Length = 217
Score = 167 bits (424), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 85/181 (46%), Positives = 122/181 (67%)
Query: 1 MLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQA 60
M RAA+ +TPLG++AK +DKGELV D++ +GI+ E + K C++GF+LDGFPRT QA
Sbjct: 34 MFRAAMKEETPLGLEAKSYIDKGELVPDEVTIGIVKERLGKDDCERGFLLDGFPRTVAQA 93
Query: 61 QKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVT 120
+ L+E+LE+ GK +D V+N +D VL ER+TGR I G TYH F PPK PG+ D
Sbjct: 94 EALEEILEEYGKPIDYVINIEVDKDVLMERLTGRRICSVCGTTYHLVFNPPKTPGICDKD 153
Query: 121 GEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 180
G L QR DD + RLE KQT+P++D+YS+KG +A ++ ++ Q+V ++V+ L
Sbjct: 154 GGELYQRADDNEETVSKRLEVNMKQTQPLLDFYSEKGYLANVNGQRDIQDVYADVKDLLE 213
Query: 181 A 181
Sbjct: 214 G 214
>pdb|2P3S|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (G214rQ199R)
Length = 217
Score = 167 bits (423), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 85/180 (47%), Positives = 122/180 (67%)
Query: 1 MLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQA 60
M RAA+ +TPLG++AK +DKGELV D++ +GI+ E + K C++GF+LDGFPRT QA
Sbjct: 34 MFRAAMKEETPLGLEAKSYIDKGELVPDEVTIGIVKERLGKDDCERGFLLDGFPRTVAQA 93
Query: 61 QKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVT 120
+ L+E+LE+ GK +D V+N +D VL ER+TGR I G TYH F PPK PG+ D
Sbjct: 94 EALEEILEEYGKPIDYVINIEVDKDVLMERLTGRRICSVCGTTYHLVFNPPKTPGICDKD 153
Query: 121 GEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 180
G L QR DD + RLE KQT+P++D+YS+KG +A ++ ++ Q+V ++V+ L
Sbjct: 154 GGELYQRADDNEETVSKRLEVNMKQTQPLLDFYSEKGYLANVNGQRDIQDVYADVKDLLG 213
>pdb|1P3J|A Chain A, Adenylate Kinase From Bacillus Subtilis
Length = 217
Score = 167 bits (423), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 85/181 (46%), Positives = 122/181 (67%)
Query: 1 MLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQA 60
M RAA+ +TPLG++AK +DKGELV D++ +GI+ E + K C++GF+LDGFPRT QA
Sbjct: 34 MFRAAMKEETPLGLEAKSYIDKGELVPDEVTIGIVKERLGKDDCERGFLLDGFPRTVAQA 93
Query: 61 QKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVT 120
+ L+E+LE+ GK +D V+N +D VL ER+TGR I G TYH F PPK PG+ D
Sbjct: 94 EALEEILEEYGKPIDYVINIEVDKDVLMERLTGRRICSVCGTTYHLVFNPPKTPGICDKD 153
Query: 121 GEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 180
G L QR DD + RLE KQT+P++D+YS+KG +A ++ ++ Q+V ++V+ L
Sbjct: 154 GGELYQRADDNEETVSKRLEVNMKQTQPLLDFYSEKGYLANVNGQQDIQDVYADVKDLLG 213
Query: 181 A 181
Sbjct: 214 G 214
>pdb|2ORI|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (A193vQ199R)
pdb|2ORI|B Chain B, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (A193vQ199R)
Length = 216
Score = 166 bits (420), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 84/181 (46%), Positives = 121/181 (66%)
Query: 1 MLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQA 60
M RAA+ +TPLG++AK +DKGELV D++ +GI+ E + K C++GF+LDGFPRT QA
Sbjct: 34 MFRAAMKEETPLGLEAKSYIDKGELVPDEVTIGIVKERLGKDDCERGFLLDGFPRTVAQA 93
Query: 61 QKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVT 120
+ L+E+LE+ GK +D V+N +D VL ER+TGR I G TYH F PPK PG+ D
Sbjct: 94 EALEEILEEYGKPIDYVINIEVDKDVLMERLTGRRICSVCGTTYHLVFNPPKTPGICDKD 153
Query: 121 GEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 180
G L QR DD + RLE KQT+P++D+YS+KG + ++ ++ Q+V ++V+ L
Sbjct: 154 GGELYQRADDNEETVSKRLEVNMKQTQPLLDFYSEKGYLVNVNGQRDIQDVYADVKDLLG 213
Query: 181 A 181
Sbjct: 214 G 214
>pdb|2OO7|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (T179iQ199R)
pdb|2OO7|B Chain B, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (T179iQ199R)
Length = 217
Score = 166 bits (419), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 84/181 (46%), Positives = 121/181 (66%)
Query: 1 MLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQA 60
M RAA+ +TPLG++AK +DKGELV D++ +GI+ E + K C++GF+LDGFPRT QA
Sbjct: 34 MFRAAMKEETPLGLEAKSYIDKGELVPDEVTIGIVKERLGKDDCERGFLLDGFPRTVAQA 93
Query: 61 QKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVT 120
+ L+E+LE+ GK +D V+N +D VL ER+TGR I G TYH F PPK PG+ D
Sbjct: 94 EALEEILEEYGKPIDYVINIEVDKDVLMERLTGRRICSVCGTTYHLVFNPPKTPGICDKD 153
Query: 121 GEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 180
G L QR DD + RLE KQ +P++D+YS+KG +A ++ ++ Q+V ++V+ L
Sbjct: 154 GGELYQRADDNEETVSKRLEVNMKQIQPLLDFYSEKGYLANVNGQRDIQDVYADVKDLLG 213
Query: 181 A 181
Sbjct: 214 G 214
>pdb|2RGX|A Chain A, Crystal Structure Of Adenylate Kinase From Aquifex
Aeolicus In Complex With Ap5a
pdb|2RH5|A Chain A, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
pdb|2RH5|C Chain C, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
pdb|2RH5|B Chain B, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
pdb|3SR0|A Chain A, Crystal Structure Of The Phosphoryl Transfer Transition
State Mimic In The Adenylate Kinase: AdpALF4AMP IN THE
ACTIVE SITE
pdb|3SR0|B Chain B, Crystal Structure Of The Phosphoryl Transfer Transition
State Mimic In The Adenylate Kinase: AdpALF4AMP IN THE
ACTIVE SITE
Length = 206
Score = 164 bits (416), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 89/180 (49%), Positives = 118/180 (65%), Gaps = 10/180 (5%)
Query: 1 MLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQA 60
+LR AV TPLG KAKE M++GELV DDL++ +I+E K I DGFPRT QA
Sbjct: 34 ILREAVQKGTPLGKKAKEYMERGELVPDDLIIALIEEVFPK---HGNVIFDGFPRTVKQA 90
Query: 61 QKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVT 120
+ LDEMLEK+G KVD VL F + D V+ ER++GR I+P +G YH K+ PP PGV
Sbjct: 91 EALDEMLEKKGLKVDHVLLFEVPDEVVIERLSGRRINPETGEVYHVKYNPPP-PGVK--- 146
Query: 121 GEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 180
+IQR+DD V+K RLE + +QT P+I+YY KKGI+ + A KP +EV +V + +
Sbjct: 147 ---VIQREDDKPEVIKKRLEVYREQTAPLIEYYKKKGILRIIDASKPVEEVYRQVLEVIG 203
>pdb|3DL0|A Chain A, Crystal Structure Of Adenylate Kinase Variant Aklse3
pdb|3DL0|B Chain B, Crystal Structure Of Adenylate Kinase Variant Aklse3
Length = 216
Score = 161 bits (407), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 82/181 (45%), Positives = 119/181 (65%)
Query: 1 MLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQA 60
M RAA+ +TPLG++AK +DKGELV D++ +GI+ E + K C++GF+LDGFPRT QA
Sbjct: 34 MFRAAMKEETPLGLEAKSYIDKGELVPDEVTIGIVKERLGKDDCERGFLLDGFPRTVAQA 93
Query: 61 QKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVT 120
+ L+E+LE+ GK +D V+N +D VL ER+TGR I G TYH F PPK PG+ D
Sbjct: 94 EALEEILEEMGKPIDYVINIQVDKDVLMERLTGRRICSVCGTTYHLVFNPPKTPGICDKD 153
Query: 121 GEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 180
G L QR DD + RLE KQT P++D+Y +KG + ++ ++ Q+V ++++ L
Sbjct: 154 GGELYQRADDNEETVTKRLEVNMKQTAPLLDFYDEKGYLVNVNGQQDIQDVYADLKVLLG 213
Query: 181 A 181
Sbjct: 214 G 214
>pdb|1E4Y|A Chain A, Mutant P9l Of Adenylate Kinase From E. Coli, Modified In
The Gly-Loop
pdb|1E4Y|B Chain B, Mutant P9l Of Adenylate Kinase From E. Coli, Modified In
The Gly-Loop
Length = 214
Score = 160 bits (405), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 84/185 (45%), Positives = 116/185 (62%), Gaps = 9/185 (4%)
Query: 1 MLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQA 60
MLRAAV + + LG +AK+ MD G+LV+D+LV+ ++ E + + C+ GF+LDGFPRT QA
Sbjct: 34 MLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRNGFLLDGFPRTIPQA 93
Query: 61 QKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVT 120
+ E G VD VL F + D ++ +RI GR +H SGR YH KF PPKV G DDVT
Sbjct: 94 DAMKE----AGINVDYVLEFDVPDELIVDRIVGRRVHAPSGRVYHVKFNPPKVEGKDDVT 149
Query: 121 GEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKG-----IVAQLHAEKPPQEVTSEV 175
GE L RKDD ++ RL +H+ T P+I YYSK+ A++ KP EV +++
Sbjct: 150 GEELTTRKDDQEETVRKRLVEYHQMTAPLIGYYSKEAEAGNTKYAKVDGTKPVAEVRADL 209
Query: 176 QKALS 180
+K L
Sbjct: 210 EKILG 214
>pdb|1E4V|A Chain A, Mutant G10v Of Adenylate Kinase From E. Coli, Modified In
The Gly-Loop
pdb|1E4V|B Chain B, Mutant G10v Of Adenylate Kinase From E. Coli, Modified In
The Gly-Loop
Length = 214
Score = 160 bits (404), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 84/185 (45%), Positives = 116/185 (62%), Gaps = 9/185 (4%)
Query: 1 MLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQA 60
MLRAAV + + LG +AK+ MD G+LV+D+LV+ ++ E + + C+ GF+LDGFPRT QA
Sbjct: 34 MLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRNGFLLDGFPRTIPQA 93
Query: 61 QKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVT 120
+ E G VD VL F + D ++ +RI GR +H SGR YH KF PPKV G DDVT
Sbjct: 94 DAMKE----AGINVDYVLEFDVPDELIVDRIVGRRVHAPSGRVYHVKFNPPKVEGKDDVT 149
Query: 121 GEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKG-----IVAQLHAEKPPQEVTSEV 175
GE L RKDD ++ RL +H+ T P+I YYSK+ A++ KP EV +++
Sbjct: 150 GEELTTRKDDQEETVRKRLVEYHQMTAPLIGYYSKEAEAGNTKYAKVDGTKPVAEVRADL 209
Query: 176 QKALS 180
+K L
Sbjct: 210 EKILG 214
>pdb|1AKE|A Chain A, Structure Of The Complex Between Adenylate Kinase From
Escherichia Coli And The Inhibitor Ap5a Refined At 1.9
Angstroms Resolution: A Model For A Catalytic Transition
State
pdb|1AKE|B Chain B, Structure Of The Complex Between Adenylate Kinase From
Escherichia Coli And The Inhibitor Ap5a Refined At 1.9
Angstroms Resolution: A Model For A Catalytic Transition
State
pdb|1ANK|A Chain A, The Closed Conformation Of A Highly Flexible Protein: The
Structure Of E. Cloi Adenylate Kinase With Bound Amp And
Amppnp
pdb|1ANK|B Chain B, The Closed Conformation Of A Highly Flexible Protein: The
Structure Of E. Cloi Adenylate Kinase With Bound Amp And
Amppnp
pdb|4AKE|A Chain A, Adenylate Kinase
pdb|4AKE|B Chain B, Adenylate Kinase
pdb|2ECK|A Chain A, Structure Of Phosphotransferase
pdb|2ECK|B Chain B, Structure Of Phosphotransferase
pdb|3HPQ|A Chain A, Crystal Structure Of Wild-Type Adenylate Kinase From E.
Coli, In Complex With Ap5a
pdb|3HPQ|B Chain B, Crystal Structure Of Wild-Type Adenylate Kinase From E.
Coli, In Complex With Ap5a
Length = 214
Score = 160 bits (404), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 84/185 (45%), Positives = 116/185 (62%), Gaps = 9/185 (4%)
Query: 1 MLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQA 60
MLRAAV + + LG +AK+ MD G+LV+D+LV+ ++ E + + C+ GF+LDGFPRT QA
Sbjct: 34 MLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRNGFLLDGFPRTIPQA 93
Query: 61 QKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVT 120
+ E G VD VL F + D ++ +RI GR +H SGR YH KF PPKV G DDVT
Sbjct: 94 DAMKE----AGINVDYVLEFDVPDELIVDRIVGRRVHAPSGRVYHVKFNPPKVEGKDDVT 149
Query: 121 GEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKG-----IVAQLHAEKPPQEVTSEV 175
GE L RKDD ++ RL +H+ T P+I YYSK+ A++ KP EV +++
Sbjct: 150 GEELTTRKDDQEETVRKRLVEYHQMTAPLIGYYSKEAEAGNTKYAKVDGTKPVAEVRADL 209
Query: 176 QKALS 180
+K L
Sbjct: 210 EKILG 214
>pdb|3HPR|A Chain A, Crystal Structure Of V148g Adenylate Kinase From E. Coli,
In Complex With Ap5a
pdb|3HPR|B Chain B, Crystal Structure Of V148g Adenylate Kinase From E. Coli,
In Complex With Ap5a
Length = 214
Score = 157 bits (397), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 83/185 (44%), Positives = 115/185 (62%), Gaps = 9/185 (4%)
Query: 1 MLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQA 60
MLRAAV + + LG +AK+ MD G+LV+D+LV+ ++ E + + C+ GF+LDGFPRT QA
Sbjct: 34 MLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRNGFLLDGFPRTIPQA 93
Query: 61 QKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVT 120
+ E G VD VL F + D ++ +RI GR +H SGR YH KF PPKV G DD T
Sbjct: 94 DAMKE----AGINVDYVLEFDVPDELIVDRIVGRRVHAPSGRVYHVKFNPPKVEGKDDGT 149
Query: 121 GEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKG-----IVAQLHAEKPPQEVTSEV 175
GE L RKDD ++ RL +H+ T P+I YYSK+ A++ KP EV +++
Sbjct: 150 GEELTTRKDDQEETVRKRLVEYHQMTAPLIGYYSKEAEAGNTKYAKVDGTKPVAEVRADL 209
Query: 176 QKALS 180
+K L
Sbjct: 210 EKILG 214
>pdb|3GMT|A Chain A, Crystal Structure Of Adenylate Kinase From Burkholderia
Pseu
pdb|3GMT|B Chain B, Crystal Structure Of Adenylate Kinase From Burkholderia
Pseu
Length = 230
Score = 155 bits (393), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 76/153 (49%), Positives = 100/153 (65%), Gaps = 4/153 (2%)
Query: 2 LRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQ 61
LRAAV A TPLG++AK D+G+LV D L++G++ E +K+ C G++ DGFPRT QA
Sbjct: 43 LRAAVKAGTPLGVEAKTYXDEGKLVPDSLIIGLVKERLKEADCANGYLFDGFPRTIAQAD 102
Query: 62 KLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTG 121
E G +D VL + + + ER +GR HP+SGRTYH KF PPKV G DDVTG
Sbjct: 103 AXKEA----GVAIDYVLEIDVPFSEIIERXSGRRTHPASGRTYHVKFNPPKVEGKDDVTG 158
Query: 122 EPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYS 154
EPL+QR DD +K RL+ + QT+P+I YY
Sbjct: 159 EPLVQRDDDKEETVKKRLDVYEAQTKPLITYYG 191
>pdb|3DKV|A Chain A, Crystal Structure Of Adenylate Kinase Variant Aklse1
Length = 217
Score = 154 bits (389), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 79/181 (43%), Positives = 116/181 (64%)
Query: 1 MLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQA 60
M RAA+ +TPLG++AK +DKGELV D++ +GI+ E + K C++GF+LDGFPRT QA
Sbjct: 34 MFRAAMKEETPLGLEAKSYIDKGELVPDEVTIGIVRERLSKSDCERGFLLDGFPRTVAQA 93
Query: 61 QKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVT 120
+ L+E+LE+ G+ +D V+N +D L ER+TGR I G TYH F PPK PG+ D
Sbjct: 94 EALEEILEEMGRPIDYVINIQVDKEELMERLTGRRICSVCGTTYHLVFNPPKTPGICDKD 153
Query: 121 GEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 180
G L QR DD + RLE KQT P++ +Y K ++ ++ ++ Q+V ++V+ L
Sbjct: 154 GGELYQRADDNEETVTKRLEVNMKQTAPLLAFYDSKEVLVNVNGQQDIQDVFADVKVILG 213
Query: 181 A 181
Sbjct: 214 G 214
>pdb|2AK3|A Chain A, The Three-Dimensional Structure Of The Complex Between
Mitochondrial Matrix Adenylate Kinase And Its Substrate
Amp At 1.85 Angstroms Resolution
pdb|2AK3|B Chain B, The Three-Dimensional Structure Of The Complex Between
Mitochondrial Matrix Adenylate Kinase And Its Substrate
Amp At 1.85 Angstroms Resolution
Length = 226
Score = 146 bits (369), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 68/159 (42%), Positives = 106/159 (66%), Gaps = 6/159 (3%)
Query: 1 MLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQA 60
+LR + T +G+ AK +D+G+L+ DD++ ++ +K Q ++LDGFPRT QA
Sbjct: 40 LLRDNMLRGTEIGVLAKTFIDQGKLIPDDVMTRLVLHELKN-LTQYNWLLDGFPRTLPQA 98
Query: 61 QKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVT 120
+ LD + ++D V+N + V+++R+T RWIHP SGR Y+ +F PPK G+DD+T
Sbjct: 99 EALD-----RAYQIDTVINLNVPFEVIKQRLTARWIHPGSGRVYNIEFNPPKTMGIDDLT 153
Query: 121 GEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIV 159
GEPL+QR+DD + RL+A+ QTEPV++YY KKG++
Sbjct: 154 GEPLVQREDDRPETVVKRLKAYEAQTEPVLEYYRKKGVL 192
>pdb|1S3G|A Chain A, Crystal Structure Of Adenylate Kinase From Bacillus
Globisporus
Length = 217
Score = 146 bits (369), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 72/181 (39%), Positives = 106/181 (58%)
Query: 1 MLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQA 60
M RAA+ T LG+KAK MD+G LV D++ +GI+ E + K C GF+LDGFPRT QA
Sbjct: 34 MFRAAIQEGTELGVKAKSFMDQGALVPDEVTIGIVRERLSKSDCDNGFLLDGFPRTVPQA 93
Query: 61 QKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVT 120
+ LD++L G+K++ VLN ++ L R+TGR I G +YH F PP+V G D
Sbjct: 94 EALDQLLADMGRKIEHVLNIQVEKEELIARLTGRRICKVCGTSYHLLFNPPQVEGKCDKD 153
Query: 121 GEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 180
G L QR DD + +RLE QT P++ +Y K ++ ++ +K ++V ++ L
Sbjct: 154 GGELYQRADDNPDTVTNRLEVNMNQTAPLLAFYDSKEVLVNINGQKDIKDVFKDLDVILQ 213
Query: 181 A 181
Sbjct: 214 G 214
>pdb|1ZD8|A Chain A, Structure Of Human Adenylate Kinase 3 Like 1
Length = 227
Score = 143 bits (361), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 68/159 (42%), Positives = 106/159 (66%), Gaps = 6/159 (3%)
Query: 1 MLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQA 60
+LR + T +G+ AK +D+G+L+ DD++ + +K Q ++LDGFPRT QA
Sbjct: 41 LLRDNMLRGTEIGVLAKAFIDQGKLIPDDVMTRLALHELKN-LTQYSWLLDGFPRTLPQA 99
Query: 61 QKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVT 120
+ LD + ++D V+N + V+++R+T RWIHP+SGR Y+ +F PPK G+DD+T
Sbjct: 100 EALD-----RAYQIDTVINLNVPFEVIKQRLTARWIHPASGRVYNIEFNPPKTVGIDDLT 154
Query: 121 GEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIV 159
GEPLIQR+DD + RL+A+ QT+PV++YY KKG++
Sbjct: 155 GEPLIQREDDKPETVIKRLKAYEDQTKPVLEYYQKKGVL 193
>pdb|2AR7|A Chain A, Crystal Structure Of Human Adenylate Kinase 4, Ak4
pdb|2AR7|B Chain B, Crystal Structure Of Human Adenylate Kinase 4, Ak4
pdb|2BBW|A Chain A, Crystal Structure Of Human Adenylate Kinase 4 (Ak4) In
Complex With Diguanosine Pentaphosphate
pdb|2BBW|B Chain B, Crystal Structure Of Human Adenylate Kinase 4 (Ak4) In
Complex With Diguanosine Pentaphosphate
Length = 246
Score = 122 bits (307), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 63/162 (38%), Positives = 98/162 (60%), Gaps = 6/162 (3%)
Query: 1 MLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQA 60
LR + A T +G AK+ ++K LV D ++ ++ ++ Q ++LDGFPRT QA
Sbjct: 61 FLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELENRRGQH-WLLDGFPRTLGQA 119
Query: 61 QKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVT 120
+ LD++ E VD V++ I L++R++ RWIHP SGR Y+ F PP V G+DDVT
Sbjct: 120 EALDKICE-----VDLVISLNIPFETLKDRLSRRWIHPPSGRVYNLDFNPPHVHGIDDVT 174
Query: 121 GEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQL 162
GEPL+Q++DD + +RL + +PVI+ Y +G++ Q
Sbjct: 175 GEPLVQQEDDKPEAVAARLRQYKDVAKPVIELYKSRGVLHQF 216
>pdb|3NDP|A Chain A, Crystal Structure Of Human Ak4(L171p)
pdb|3NDP|B Chain B, Crystal Structure Of Human Ak4(L171p)
Length = 231
Score = 119 bits (299), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 62/162 (38%), Positives = 97/162 (59%), Gaps = 6/162 (3%)
Query: 1 MLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQA 60
LR + A T +G AK+ ++K LV D ++ ++ ++ Q ++LDGFPRT QA
Sbjct: 39 FLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELENRRGQH-WLLDGFPRTLGQA 97
Query: 61 QKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVT 120
+ LD++ E VD V++ I L++R++ RWIHP SGR Y+ F PP V G+DDVT
Sbjct: 98 EALDKICE-----VDLVISLNIPFETLKDRLSRRWIHPPSGRVYNLDFNPPHVHGIDDVT 152
Query: 121 GEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQL 162
GEPL+Q++DD + +R + +PVI+ Y +G++ Q
Sbjct: 153 GEPLVQQEDDKPEAVAARPRQYKDVAKPVIELYKSRGVLHQF 194
>pdb|1ZAK|A Chain A, Adenylate Kinase From Maize In Complex With The Inhibitor
P1,P5-Bis(Adenosine-5'-)pentaphosphate (Ap5a)
pdb|1ZAK|B Chain B, Adenylate Kinase From Maize In Complex With The Inhibitor
P1,P5-Bis(Adenosine-5'-)pentaphosphate (Ap5a)
Length = 222
Score = 105 bits (263), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 61/182 (33%), Positives = 108/182 (59%), Gaps = 11/182 (6%)
Query: 1 MLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQK-GFILDGFPRTEVQ 59
+LRA +AA + G +AKE M+KG+LV D++VV ++ E +++P Q+ G++LDG+PR+ Q
Sbjct: 39 LLRAEIAAGSENGKRAKEFMEKGQLVPDEIVVNMVKERLRQPDAQENGWLLDGYPRSYSQ 98
Query: 60 AQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDV 119
A L E LE + D + + D +L ER+ GR + P +G+ YH K++PP+ ++
Sbjct: 99 AMAL-ETLE---IRPDTFILLDVPDELLVERVVGRRLDPVTGKIYHLKYSPPE----NEE 150
Query: 120 TGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKAL 179
L QR DDT +K RLE +++ E ++ Y + I+ ++ + V +++ + L
Sbjct: 151 IASRLTQRFDDTEEKVKLRLETYYQNIESLLSTY--ENIIVKVQGDATVDAVFAKIDELL 208
Query: 180 SA 181
+
Sbjct: 209 GS 210
>pdb|2CDN|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Adenylate
Kinase Complexed With Two Molecules Of Adp And Mg
Length = 201
Score = 94.7 bits (234), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 78/153 (50%), Gaps = 31/153 (20%)
Query: 1 MLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQA 60
+ R + T LG++AK +D G+LV DL ++D+ + P GFILDG+PR+ QA
Sbjct: 54 LFRRNIEEGTKLGVEAKRYLDAGDLVPSDLTNELVDDRLNNPDAANGFILDGYPRSVEQA 113
Query: 61 QKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVT 120
+ L EMLE++G +D VL F + + VL ER+ GR
Sbjct: 114 KALHEMLERRGTDIDAVLEFRVSEEVLLERLKGRG------------------------- 148
Query: 121 GEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYY 153
R DDT V+ +R++ + +T P+++YY
Sbjct: 149 ------RADDTDDVILNRMKVYRDETAPLLEYY 175
>pdb|1P4S|A Chain A, Solution Structure Of Mycobacterium Tuberculosis Adenylate
Kinase
Length = 181
Score = 94.7 bits (234), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 78/153 (50%), Gaps = 31/153 (20%)
Query: 1 MLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQA 60
+ R + T LG++AK +D G+LV DL ++D+ + P GFILDG+PR+ QA
Sbjct: 34 LFRRNIEEGTKLGVEAKRYLDAGDLVPSDLTNELVDDRLNNPDAANGFILDGYPRSVEQA 93
Query: 61 QKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVT 120
+ L EMLE++G +D VL F + + VL ER+ GR
Sbjct: 94 KALHEMLERRGTDIDAVLEFRVSEEVLLERLKGRG------------------------- 128
Query: 121 GEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYY 153
R DDT V+ +R++ + +T P+++YY
Sbjct: 129 ------RADDTDDVILNRMKVYRDETAPLLEYY 155
>pdb|3CM0|A Chain A, Crystal Structure Of Adenylate Kinase From Thermus
Thermophilus Hb8
Length = 186
Score = 79.0 bits (193), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 87/180 (48%), Gaps = 32/180 (17%)
Query: 1 MLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQA 60
+LR VA TPLG + + M++G+LV DDL++ +I E + + I DGFPRT QA
Sbjct: 38 ILRDHVARGTPLGERVRPIMERGDLVPDDLILELIREELAER-----VIFDGFPRTLAQA 92
Query: 61 QKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVT 120
+ LD +L + G ++ V+ + + L RI R
Sbjct: 93 EALDRLLSETGTRLLGVVLVEVPEEELVRRILRRA------------------------- 127
Query: 121 GEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 180
L R DD ++ RLE + ++TEP++ YY +G++ ++ P EV + ++ AL
Sbjct: 128 --ELEGRSDDNEETVRRRLEVYREKTEPLVGYYEARGVLKRVDGLGTPDEVYARIRAALG 185
>pdb|3L0P|A Chain A, Crystal Structures Of Iron Containing Adenylate Kinase
From Desulfovibrio Gigas
pdb|3L0S|A Chain A, Crystal Structures Of Zinc, Cobalt And Iron Containing
Adenylate Kinase From Gram-Negative Bacteria
Desulfovibrio Gigas
pdb|3L0S|C Chain C, Crystal Structures Of Zinc, Cobalt And Iron Containing
Adenylate Kinase From Gram-Negative Bacteria
Desulfovibrio Gigas
Length = 223
Score = 78.2 bits (191), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 83/161 (51%), Gaps = 6/161 (3%)
Query: 1 MLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQA 60
+ R + T LG KAKE +D+G+LV DD+ + ++ E ++ + G++LDGFPR VQA
Sbjct: 34 IFREHIGGGTELGKKAKEFIDRGDLVPDDITIPMVLETLESKG-KDGWLLDGFPRNTVQA 92
Query: 61 QKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVD--D 118
QKL E L+++G K++ V+ + V + RI GR I ++ + F P D
Sbjct: 93 QKLFEALQEKGMKINFVIEILLPREVAKNRIMGRRICKNNPNHPNNIFIEAIKPNGDVCR 152
Query: 119 VTGEPLIQRKDDT-AAVLKSRLEAFHKQTEPVI--DYYSKK 156
V G L R DD + R + ++ + + YY K
Sbjct: 153 VCGGALSARADDQDEGAINKRHDIYYNTVDGTLAAAYYYKN 193
>pdb|2XB4|A Chain A, Crystal Structures Of Zinc Containing Adenylate Kinase
From Desulfovibrio Gigas
Length = 223
Score = 78.2 bits (191), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 83/161 (51%), Gaps = 6/161 (3%)
Query: 1 MLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQA 60
+ R + T LG KAKE +D+G+LV DD+ + ++ E ++ + G++LDGFPR VQA
Sbjct: 34 IFREHIGGGTELGKKAKEFIDRGDLVPDDITIPMVLETLESKG-KDGWLLDGFPRNTVQA 92
Query: 61 QKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVD--D 118
QKL E L+++G K++ V+ + V + RI GR I ++ + F P D
Sbjct: 93 QKLFEALQEKGMKINFVIEILLPREVAKNRIMGRRICKNNPNHPNNIFIDAIKPNGDVCR 152
Query: 119 VTGEPLIQRKDDT-AAVLKSRLEAFHKQTEPVI--DYYSKK 156
V G L R DD + R + ++ + + YY K
Sbjct: 153 VCGGALSARADDQDEGAINKRHDIYYNTVDGTLAAAYYYKN 193
>pdb|1Z83|A Chain A, Crystal Structure Of Human Ak1a In Complex With Ap5a
pdb|1Z83|B Chain B, Crystal Structure Of Human Ak1a In Complex With Ap5a
pdb|1Z83|C Chain C, Crystal Structure Of Human Ak1a In Complex With Ap5a
pdb|2C95|A Chain A, Structure Of Adenylate Kinase 1 In Complex With P1,P4-Di
(Adenosine)tetraphosphate
pdb|2C95|B Chain B, Structure Of Adenylate Kinase 1 In Complex With P1,P4-Di
(Adenosine)tetraphosphate
Length = 196
Score = 73.2 bits (178), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 90/182 (49%), Gaps = 32/182 (17%)
Query: 1 MLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAM-KKPSCQKGFILDGFPRTEVQ 59
+LR+ V++ + G K E M+KG+LV + V+ ++ +AM K + KGF++DG+PR EVQ
Sbjct: 43 LLRSEVSSGSARGKKLSEIMEKGQLVPLETVLDMLRDAMVAKVNTSKGFLIDGYPR-EVQ 101
Query: 60 AQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDV 119
E E++ + +L + +R+ R +SGR
Sbjct: 102 Q---GEEFERRIGQPTLLLYVDAGPETMTQRLLKRG--ETSGRV---------------- 140
Query: 120 TGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKAL 179
DD +K RLE ++K TEPVI +Y K+GIV +++AE V S+V L
Sbjct: 141 ---------DDNEETIKKRLETYYKATEPVIAFYEKRGIVRKVNAEGSVDSVFSQVCTHL 191
Query: 180 SA 181
A
Sbjct: 192 DA 193
>pdb|3ADK|A Chain A, Refined Structure Of Porcine Cytosolic Adenylate Kinase At
2.1 Angstroms Resolution
Length = 195
Score = 69.7 bits (169), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 88/179 (49%), Gaps = 38/179 (21%)
Query: 1 MLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAM-KKPSCQKGFILDGFPRTEVQ 59
+LRA V++ + G E M+KG+LV + V+ ++ +AM K KGF++DG+PR Q
Sbjct: 43 LLRAEVSSGSARGKMLSEIMEKGQLVPLETVLDMLRDAMVAKVDTSKGFLIDGYPREVKQ 102
Query: 60 AQKLDEMLEKQGKKVDK-VLNFAIDDAVLEERITGRWIH--PSSGRTYHTKFAPPKVPGV 116
++ + +K+ + L +D E +T R + +SGR
Sbjct: 103 GEEFE-------RKIGQPTLLLYVDAG--PETMTKRLLKRGETSGRV------------- 140
Query: 117 DDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEV 175
DD +K RLE ++K TEPVI +Y K+GIV +++AE +V S+V
Sbjct: 141 ------------DDNEETIKKRLETYYKATEPVIAFYEKRGIVRKVNAEGSVDDVFSQV 187
>pdb|3UMF|A Chain A, Schistosoma Mansoni Adenylate Kinase
Length = 217
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 82/182 (45%), Gaps = 36/182 (19%)
Query: 1 MLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKK---PSCQKGFILDGFPRTE 57
+LRA V + +P G + K M++GELV ++V+ ++ EAM K +C F++DG+PR
Sbjct: 63 LLRAEVQSGSPKGKELKAMMERGELVPLEVVLALLKEAMIKLVDKNCH--FLIDGYPREL 120
Query: 58 VQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVD 117
Q K EK+ V+NF + + V+ +R+ R +S R
Sbjct: 121 DQGIK----FEKEVCPCLCVINFDVSEEVMRKRLLKRA--ETSNRV-------------- 160
Query: 118 DVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQK 177
DD + R F++ T+PVI++Y ++ V + A + +V
Sbjct: 161 -----------DDNEETIVKRFRTFNELTKPVIEHYKQQNKVITIDASGTVDAIFDKVNH 209
Query: 178 AL 179
L
Sbjct: 210 EL 211
>pdb|2BWJ|A Chain A, Structure Of Adenylate Kinase 5
pdb|2BWJ|B Chain B, Structure Of Adenylate Kinase 5
pdb|2BWJ|C Chain C, Structure Of Adenylate Kinase 5
pdb|2BWJ|D Chain D, Structure Of Adenylate Kinase 5
pdb|2BWJ|E Chain E, Structure Of Adenylate Kinase 5
pdb|2BWJ|F Chain F, Structure Of Adenylate Kinase 5
Length = 199
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 88/183 (48%), Gaps = 34/183 (18%)
Query: 1 MLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAM-KKPSCQKGFILDGFPRTEVQ 59
+LR +A+++ ++ M++G+LV +V+ ++ EAM +GF++DG+PR Q
Sbjct: 46 LLREELASESERSKLIRDIMERGDLVPSGIVLELLKEAMVASLGDTRGFLIDGYPREVKQ 105
Query: 60 AQKLDEMLEKQGKKV-DKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDD 118
++ G+++ D L +D + + +T R + S +P
Sbjct: 106 GEEF-------GRRIGDPQLVICMDCSA--DTMTNRLLQMSR----------SSLP---- 142
Query: 119 VTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKA 178
DDT + RLEA+++ + PVI YY K + +++AE P++V ++ A
Sbjct: 143 ---------VDDTTKTIAKRLEAYYRASIPVIAYYETKTQLHKINAEGTPEDVFLQLCTA 193
Query: 179 LSA 181
+ +
Sbjct: 194 IDS 196
>pdb|1TEV|A Chain A, Crystal Structure Of The Human UmpCMP KINASE IN OPEN
Conformation
Length = 196
Score = 50.4 bits (119), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 63/141 (44%), Gaps = 28/141 (19%)
Query: 35 IDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGR 94
+D+ M + + F++DGFPR + Q ++ ++ + V VL F ++ + ER R
Sbjct: 76 MDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKAD-VSFVLFFDCNNEICIERCLER 134
Query: 95 WIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYS 154
SSGR+ DD L+ R++ + + T+P+ID Y
Sbjct: 135 --GKSSGRS-------------------------DDNRESLEKRIQTYLQSTKPIIDLYE 167
Query: 155 KKGIVAQLHAEKPPQEVTSEV 175
+ G V ++ A K EV EV
Sbjct: 168 EMGKVKKIDASKSVDEVFDEV 188
>pdb|1UKY|A Chain A, Substrate Specificity And Assembly Of Catalytic Center
Derived From Two Structures Of Ligated Uridylate Kinase
pdb|1UKZ|A Chain A, Substrate Specificity And Assembly Of Catalytic Center
Derived From Two Structures Of Ligated Uridylate Kinase
Length = 203
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/184 (22%), Positives = 82/184 (44%), Gaps = 38/184 (20%)
Query: 1 MLRAAVA-AKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKP--SCQKGFILDGFPRTE 57
+LRA A + G K + +G++V ++ + ++ A+ + + F++DGFPR
Sbjct: 49 LLRAEQGRAGSQYGELIKNCIKEGQIVPQEITLALLRNAISDNVKANKHKFLIDGFPR-- 106
Query: 58 VQAQKLDEMLEKQGKKVDK--VLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPG 115
K+D+ + + V+ +L F + ++ ER+ R +SGR+
Sbjct: 107 ----KMDQAISFERDIVESKFILFFDCPEDIMLERLLERG--KTSGRS------------ 148
Query: 116 VDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEV 175
DD +K R F + + PVI+Y+ K V ++ ++ ++V +V
Sbjct: 149 -------------DDNIESIKKRFNTFKETSMPVIEYFETKSKVVRVRCDRSVEDVYKDV 195
Query: 176 QKAL 179
Q A+
Sbjct: 196 QDAI 199
>pdb|1QF9|A Chain A, Ph Influences Fluoride Coordination Number Of The Alfx
Phosphoryl Transfer Transition State Analog In UmpCMP
Kinase
pdb|5UKD|A Chain A, Ph Influences Fluoride Coordination Number Of The Alfx
Phosphoryl Transfer Transition State Analog
pdb|1UKE|A Chain A, UmpCMP KINASE FROM SLIME MOLD
pdb|2UKD|A Chain A, UmpCMP KINASE FROM SLIME MOLD COMPLEXED WITH ADP, CMP
pdb|3UKD|A Chain A, UmpCMP KINASE FROM SLIME MOLD COMPLEXED WITH ADP, CMP, AND
Alf3
pdb|4UKD|A Chain A, UmpCMP KINASE FROM SLIME MOLD COMPLEXED WITH ADP, UDP,
Beryllium Fluoride
Length = 194
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 68/160 (42%), Gaps = 29/160 (18%)
Query: 22 KGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFA 81
GE+V + V ++ A+ + K F++DGFPR E +E + K VL F
Sbjct: 61 NGEIVPSIVTVKLLKNAID-ANQGKNFLVDGFPRNEENNNSWEENM-KDFVDTKFVLFFD 118
Query: 82 IDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEA 141
+ V+ +R+ R SSGR+ DD +K R
Sbjct: 119 CPEEVMTQRLLKR--GESSGRS-------------------------DDNIESIKKRFNT 151
Query: 142 FHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALSA 181
F+ QT+ VID+Y+K V + A + EV ++V+ +
Sbjct: 152 FNVQTKLVIDHYNKFDKVKIIPANRDVNEVYNDVENLFKS 191
>pdb|3RGI|A Chain A, Trans-Acting Transferase From Disorazole Synthase
Length = 286
Score = 28.1 bits (61), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 108 FAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGI 158
FAPPK+P + +VT P + D A L ++ + + E I Y +G+
Sbjct: 211 FAPPKIPVISNVTARPC--KADGIRAALSEQIASPVRWCES-IRYLMGRGV 258
>pdb|3SBM|A Chain A, Trans-Acting Transferase From Disorazole Synthase In
Complex With Acetate
Length = 281
Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 108 FAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGI 158
FAPPK+P + +VT P + D A L ++ + + E I Y +G+
Sbjct: 211 FAPPKIPVISNVTARPC--KADGIRAALSEQIASPVRWCES-IRYLMGRGV 258
>pdb|1OSB|A Chain A, Conjugative Relaxase Trwc In Complex With Orit Dna. Metal-
Free Structure.
pdb|1OSB|C Chain C, Conjugative Relaxase Trwc In Complex With Orit Dna. Metal-
Free Structure
Length = 293
Score = 27.7 bits (60), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 9/29 (31%), Positives = 20/29 (68%)
Query: 130 DTAAVLKSRLEAFHKQTEPVIDYYSKKGI 158
D A + + ++E F K+TE + ++Y+ +G+
Sbjct: 220 DLAHIDRQQIEGFSKRTEQIAEWYAARGL 248
>pdb|2CDM|A Chain A, The Structure Of Trwc Complexed With A 27-Mer Dna
Comprising The Recognition Hairpin And The Cleavage Site
pdb|2CDM|C Chain C, The Structure Of Trwc Complexed With A 27-Mer Dna
Comprising The Recognition Hairpin And The Cleavage Site
Length = 293
Score = 27.7 bits (60), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 9/29 (31%), Positives = 20/29 (68%)
Query: 130 DTAAVLKSRLEAFHKQTEPVIDYYSKKGI 158
D A + + ++E F K+TE + ++Y+ +G+
Sbjct: 220 DLAHIDRQQIEGFSKRTEQIAEWYAARGL 248
>pdb|1OMH|A Chain A, Conjugative Relaxase Trwc In Complex With Orit Dna. Metal-
Free Structure.
pdb|1QX0|A Chain A, Conjugative Relaxase Trwc In Complex With Orit Dna. Metal-
Bound Structure
pdb|1S6M|A Chain A, Conjugative Relaxase Trwc In Complex With Orit Dna. Metal-
Bound Structure
pdb|1ZM5|A Chain A, Conjugative Relaxase Trwc In Complex With Orit Dna,
Cooper- Bound Structure
Length = 293
Score = 27.7 bits (60), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 9/29 (31%), Positives = 20/29 (68%)
Query: 130 DTAAVLKSRLEAFHKQTEPVIDYYSKKGI 158
D A + + ++E F K+TE + ++Y+ +G+
Sbjct: 220 DLAHIDRQQIEGFSKRTEQIAEWYAARGL 248
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.132 0.371
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,313,614
Number of Sequences: 62578
Number of extensions: 214947
Number of successful extensions: 453
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 372
Number of HSP's gapped (non-prelim): 55
length of query: 181
length of database: 14,973,337
effective HSP length: 93
effective length of query: 88
effective length of database: 9,153,583
effective search space: 805515304
effective search space used: 805515304
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 48 (23.1 bits)