Query 030234
Match_columns 181
No_of_seqs 169 out of 1035
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 10:37:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030234.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030234hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02674 adenylate kinase 100.0 2.4E-51 5.2E-56 323.7 22.3 180 1-180 65-244 (244)
2 PRK14529 adenylate kinase; Pro 100.0 1.8E-46 3.9E-51 292.8 21.0 179 1-180 34-223 (223)
3 PRK14526 adenylate kinase; Pro 100.0 3.3E-46 7.2E-51 290.0 20.9 175 1-180 34-208 (211)
4 PLN02459 probable adenylate ki 100.0 4.7E-46 1E-50 295.1 20.7 173 1-180 63-250 (261)
5 PRK00279 adk adenylate kinase; 100.0 1.3E-43 2.7E-48 276.6 23.1 181 1-181 34-214 (215)
6 TIGR01351 adk adenylate kinase 100.0 6.4E-43 1.4E-47 271.7 21.5 177 1-180 33-210 (210)
7 KOG3078 Adenylate kinase [Nucl 100.0 2.4E-43 5.2E-48 273.6 17.4 175 1-180 49-223 (235)
8 PTZ00088 adenylate kinase 1; P 100.0 1.3E-41 2.9E-46 267.0 20.7 174 1-179 40-229 (229)
9 PRK14530 adenylate kinase; Pro 100.0 6.7E-37 1.5E-41 238.7 21.1 172 1-181 37-213 (215)
10 KOG3079 Uridylate kinase/adeny 100.0 3.3E-36 7.1E-41 224.2 17.7 151 1-181 42-193 (195)
11 PLN02842 nucleotide kinase 100.0 2.9E-36 6.4E-41 257.1 19.6 170 1-180 31-201 (505)
12 PRK13808 adenylate kinase; Pro 100.0 7.9E-36 1.7E-40 244.0 19.6 159 1-180 34-192 (333)
13 PRK14528 adenylate kinase; Pro 100.0 9E-35 2E-39 222.1 20.1 152 1-179 35-186 (186)
14 PRK14531 adenylate kinase; Pro 100.0 2E-32 4.4E-37 208.6 19.8 147 1-179 36-182 (183)
15 cd01428 ADK Adenylate kinase ( 100.0 4.9E-32 1.1E-36 207.1 19.0 162 1-171 33-194 (194)
16 PRK14532 adenylate kinase; Pro 100.0 1.5E-31 3.2E-36 204.2 20.6 153 1-180 34-186 (188)
17 PRK02496 adk adenylate kinase; 100.0 3E-31 6.5E-36 202.0 19.9 150 1-181 35-184 (184)
18 PRK14527 adenylate kinase; Pro 100.0 5.4E-31 1.2E-35 201.9 20.2 151 1-179 40-190 (191)
19 PF00406 ADK: Adenylate kinase 100.0 2.8E-30 6E-35 190.9 14.1 122 1-158 30-151 (151)
20 COG0563 Adk Adenylate kinase a 100.0 3.8E-29 8.3E-34 189.5 16.1 145 1-180 34-178 (178)
21 TIGR01359 UMP_CMP_kin_fam UMP- 100.0 2.2E-28 4.9E-33 185.6 20.2 150 1-179 33-182 (183)
22 PLN02200 adenylate kinase fami 100.0 2.6E-28 5.6E-33 192.6 18.9 147 1-180 77-223 (234)
23 TIGR01360 aden_kin_iso1 adenyl 99.9 3.2E-23 6.9E-28 157.5 19.0 149 1-180 37-186 (188)
24 PRK13974 thymidylate kinase; P 99.6 3.5E-15 7.6E-20 116.1 13.0 136 8-180 46-205 (212)
25 PF05191 ADK_lid: Adenylate ki 99.2 5E-12 1.1E-16 70.6 -0.1 36 94-129 1-36 (36)
26 PRK13973 thymidylate kinase; P 99.1 7.1E-10 1.5E-14 86.4 11.5 140 9-180 42-205 (213)
27 PRK08356 hypothetical protein; 99.0 8.3E-09 1.8E-13 79.2 11.9 68 17-95 65-136 (195)
28 PRK01184 hypothetical protein; 98.7 1.3E-06 2.9E-11 66.1 15.5 126 11-180 50-177 (184)
29 PRK13975 thymidylate kinase; P 98.7 7.6E-07 1.6E-11 68.0 12.7 138 9-180 36-189 (196)
30 PRK08233 hypothetical protein; 98.7 2.6E-07 5.6E-12 69.5 9.6 125 16-180 47-176 (182)
31 PHA02530 pseT polynucleotide k 98.5 6E-07 1.3E-11 73.0 9.3 94 45-170 75-171 (300)
32 PRK03839 putative kinase; Prov 98.5 2.4E-06 5.1E-11 64.5 11.4 100 32-180 52-152 (180)
33 COG0125 Tmk Thymidylate kinase 98.4 2.7E-05 5.8E-10 60.5 14.8 140 8-180 41-202 (208)
34 PRK06217 hypothetical protein; 98.4 1.8E-05 3.8E-10 60.1 13.5 126 25-181 47-179 (183)
35 PRK00698 tmk thymidylate kinas 98.3 4.4E-05 9.5E-10 58.4 15.1 137 9-180 42-201 (205)
36 TIGR00041 DTMP_kinase thymidyl 98.3 3.5E-05 7.7E-10 58.6 13.5 69 73-175 127-195 (195)
37 cd01672 TMPK Thymidine monopho 98.2 0.0002 4.2E-09 54.2 15.5 139 9-181 39-200 (200)
38 PRK07933 thymidylate kinase; V 98.2 6.8E-05 1.5E-09 58.4 13.1 145 9-180 41-212 (213)
39 PLN02924 thymidylate kinase 98.1 0.00014 3.1E-09 57.0 13.5 131 8-180 55-202 (220)
40 KOG3327 Thymidylate kinase/ade 98.0 0.00032 7E-09 53.2 12.8 132 8-180 44-194 (208)
41 PF02223 Thymidylate_kin: Thym 97.8 0.00014 2.9E-09 55.1 8.5 132 8-175 34-186 (186)
42 PRK08118 topology modulation p 97.8 7.1E-05 1.5E-09 56.1 6.7 75 8-96 13-101 (167)
43 smart00072 GuKc Guanylate kina 97.7 0.00024 5.3E-09 53.9 8.4 116 14-180 57-181 (184)
44 PRK13976 thymidylate kinase; P 97.6 0.013 2.8E-07 45.5 16.3 133 9-180 41-200 (209)
45 cd02030 NDUO42 NADH:Ubiquinone 97.5 0.0027 5.9E-08 49.5 12.4 74 72-177 141-217 (219)
46 PRK14738 gmk guanylate kinase; 97.5 0.00093 2E-08 51.7 9.2 70 73-180 122-193 (206)
47 PRK03731 aroL shikimate kinase 97.5 0.0014 2.9E-08 48.9 9.2 88 53-180 81-169 (171)
48 PRK13949 shikimate kinase; Pro 97.3 0.01 2.2E-07 44.5 12.5 94 46-179 71-169 (169)
49 TIGR03574 selen_PSTK L-seryl-t 97.0 0.013 2.7E-07 46.6 10.9 97 46-179 69-167 (249)
50 TIGR02322 phosphon_PhnN phosph 97.0 0.0062 1.4E-07 45.6 8.7 67 74-180 111-177 (179)
51 PRK10078 ribose 1,5-bisphospho 96.9 0.023 4.9E-07 43.1 10.8 67 73-181 110-176 (186)
52 PRK14731 coaE dephospho-CoA ki 96.8 0.0074 1.6E-07 46.7 7.9 69 73-180 133-201 (208)
53 cd01673 dNK Deoxyribonucleosid 96.8 0.034 7.4E-07 42.1 11.3 50 46-95 79-146 (193)
54 PRK04040 adenylate kinase; Pro 96.8 0.05 1.1E-06 41.5 12.0 78 72-180 109-188 (188)
55 PRK06762 hypothetical protein; 96.3 0.094 2E-06 38.6 10.8 95 46-180 69-163 (166)
56 COG1936 Predicted nucleotide k 96.3 0.055 1.2E-06 40.8 9.3 71 73-180 82-155 (180)
57 PF01712 dNK: Deoxynucleoside 96.3 0.0043 9.4E-08 45.4 3.3 24 72-95 65-89 (146)
58 PRK12339 2-phosphoglycerate ki 96.2 0.00075 1.6E-08 52.0 -1.3 138 2-179 38-195 (197)
59 PRK09825 idnK D-gluconate kina 96.1 0.045 9.8E-07 41.3 8.2 92 45-180 76-167 (176)
60 PRK14734 coaE dephospho-CoA ki 95.5 0.074 1.6E-06 40.9 7.3 69 73-180 125-193 (200)
61 PF13671 AAA_33: AAA domain; P 95.5 0.17 3.7E-06 36.0 8.7 62 31-96 59-120 (143)
62 PRK00081 coaE dephospho-CoA ki 95.1 0.14 2.9E-06 39.2 7.5 69 73-180 124-192 (194)
63 PRK07261 topology modulation p 95.0 0.084 1.8E-06 39.5 6.1 59 26-96 43-101 (171)
64 PRK00300 gmk guanylate kinase; 94.9 0.3 6.6E-06 37.2 9.2 45 129-180 139-183 (205)
65 PRK13947 shikimate kinase; Pro 94.5 0.66 1.4E-05 34.1 9.9 21 75-95 95-115 (171)
66 KOG3347 Predicted nucleotide k 94.3 0.7 1.5E-05 34.3 9.1 106 25-179 59-164 (176)
67 TIGR01313 therm_gnt_kin carboh 94.3 0.25 5.5E-06 36.2 7.1 89 47-179 73-161 (163)
68 PRK00131 aroK shikimate kinase 94.2 0.88 1.9E-05 33.3 10.0 21 75-95 98-118 (175)
69 TIGR00152 dephospho-CoA kinase 94.2 0.64 1.4E-05 35.1 9.3 82 47-176 106-187 (188)
70 PRK05057 aroK shikimate kinase 94.1 0.44 9.4E-06 35.7 8.1 21 75-95 98-118 (172)
71 COG0703 AroK Shikimate kinase 93.7 0.51 1.1E-05 35.6 7.8 68 76-180 97-167 (172)
72 PRK11545 gntK gluconate kinase 93.3 0.38 8.2E-06 35.7 6.6 70 73-180 90-159 (163)
73 COG1428 Deoxynucleoside kinase 93.3 0.53 1.1E-05 36.7 7.4 23 73-95 126-148 (216)
74 TIGR03263 guanyl_kin guanylate 92.8 2.6 5.6E-05 31.2 10.5 68 74-181 113-180 (180)
75 PRK14737 gmk guanylate kinase; 92.7 1.7 3.7E-05 33.0 9.4 87 46-181 95-184 (186)
76 TIGR02173 cyt_kin_arch cytidyl 92.3 2 4.4E-05 31.3 9.3 40 45-95 74-113 (171)
77 cd00464 SK Shikimate kinase (S 92.2 2.4 5.3E-05 30.3 9.5 22 74-95 92-113 (154)
78 PRK14732 coaE dephospho-CoA ki 91.9 1.8 3.8E-05 33.2 8.8 69 73-180 121-189 (196)
79 PRK05416 glmZ(sRNA)-inactivati 91.4 6.9 0.00015 32.0 13.5 67 26-93 37-105 (288)
80 COG0194 Gmk Guanylate kinase [ 91.2 2.1 4.5E-05 32.8 8.2 47 127-180 135-181 (191)
81 PRK13946 shikimate kinase; Pro 91.1 3.6 7.9E-05 30.9 9.7 72 75-180 104-175 (184)
82 PRK14730 coaE dephospho-CoA ki 90.9 2.4 5.1E-05 32.4 8.5 69 73-180 125-193 (195)
83 PTZ00451 dephospho-CoA kinase; 90.6 2.4 5.2E-05 33.8 8.5 68 73-179 136-205 (244)
84 PF01202 SKI: Shikimate kinase 90.5 3 6.6E-05 30.5 8.6 36 52-95 71-106 (158)
85 PLN02422 dephospho-CoA kinase 89.9 2.9 6.3E-05 33.0 8.4 23 73-95 125-147 (232)
86 COG3265 GntK Gluconate kinase 89.3 1.6 3.5E-05 32.3 6.0 118 18-180 36-158 (161)
87 PRK04182 cytidylate kinase; Pr 89.1 5.8 0.00013 29.0 9.3 22 74-95 92-113 (180)
88 PHA03132 thymidine kinase; Pro 89.1 4.3 9.3E-05 36.5 9.7 50 46-95 360-423 (580)
89 KOG4235 Mitochondrial thymidin 88.7 3.3 7.1E-05 32.2 7.5 29 68-96 148-176 (244)
90 cd02020 CMPK Cytidine monophos 88.6 1.1 2.4E-05 31.7 4.9 39 45-94 65-103 (147)
91 PF03668 ATP_bind_2: P-loop AT 88.5 12 0.00027 30.5 14.3 117 25-179 31-154 (284)
92 PRK14733 coaE dephospho-CoA ki 88.4 5.2 0.00011 31.0 8.7 69 73-180 128-197 (204)
93 TIGR03707 PPK2_P_aer polyphosp 86.8 12 0.00027 29.5 10.1 90 54-168 117-207 (230)
94 COG1660 Predicted P-loop-conta 86.7 16 0.00034 29.7 12.6 117 25-179 31-155 (286)
95 PRK14021 bifunctional shikimat 86.5 14 0.0003 32.9 11.4 39 52-94 85-123 (542)
96 PRK08154 anaerobic benzoate ca 86.4 4.3 9.3E-05 33.3 7.7 21 75-95 228-248 (309)
97 PRK05537 bifunctional sulfate 86.1 9.5 0.00021 34.2 10.2 56 12-67 354-416 (568)
98 TIGR03709 PPK2_rel_1 polyphosp 85.2 7 0.00015 31.6 8.1 101 54-179 142-246 (264)
99 COG0237 CoaE Dephospho-CoA kin 85.0 3.8 8.2E-05 31.7 6.3 68 74-180 124-191 (201)
100 cd00227 CPT Chloramphenicol (C 84.8 14 0.0003 27.4 10.2 46 46-95 86-132 (175)
101 PF00625 Guanylate_kin: Guanyl 84.8 4.2 9.1E-05 30.4 6.5 45 129-180 137-181 (183)
102 PRK13477 bifunctional pantoate 84.0 8.4 0.00018 34.1 8.7 21 74-94 421-441 (512)
103 PRK00625 shikimate kinase; Pro 83.8 16 0.00035 27.4 9.8 21 75-95 97-117 (173)
104 PRK12496 hypothetical protein; 83.4 2.6 5.7E-05 31.5 4.7 30 94-127 127-156 (164)
105 cd02021 GntK Gluconate kinase 82.2 11 0.00023 26.9 7.5 48 45-95 72-119 (150)
106 PRK05480 uridine/cytidine kina 82.2 8.6 0.00019 29.3 7.4 40 47-95 108-147 (209)
107 TIGR00235 udk uridine kinase. 82.0 5.3 0.00011 30.5 6.1 41 46-95 107-147 (207)
108 COG3709 Uncharacterized compon 81.2 11 0.00024 28.5 7.1 64 76-179 117-180 (192)
109 PRK13948 shikimate kinase; Pro 80.0 24 0.00051 26.7 11.3 18 75-92 104-121 (182)
110 PLN02199 shikimate kinase 80.0 17 0.00036 30.0 8.5 18 76-93 197-214 (303)
111 PRK03333 coaE dephospho-CoA ki 79.7 16 0.00034 31.2 8.7 23 73-95 123-145 (395)
112 PLN02772 guanylate kinase 78.3 22 0.00048 30.5 9.0 48 127-180 268-317 (398)
113 COG4088 Predicted nucleotide k 77.8 24 0.00052 27.9 8.3 24 72-95 100-123 (261)
114 PF03976 PPK2: Polyphosphate k 74.4 13 0.00027 29.4 6.2 89 53-168 116-207 (228)
115 PRK03846 adenylylsulfate kinas 74.0 6 0.00013 30.0 4.3 41 47-90 97-138 (198)
116 TIGR03708 poly_P_AMP_trns poly 72.2 55 0.0012 29.0 10.1 87 57-168 129-216 (493)
117 KOG3877 NADH:ubiquinone oxidor 72.0 26 0.00056 28.9 7.5 25 72-96 216-240 (393)
118 KOG3354 Gluconate kinase [Carb 71.8 15 0.00033 27.6 5.6 71 18-95 53-139 (191)
119 TIGR03708 poly_P_AMP_trns poly 70.7 64 0.0014 28.6 10.2 87 57-168 388-475 (493)
120 PF08880 QLQ: QLQ; InterPro: 70.4 7.2 0.00016 21.6 2.9 20 15-34 16-35 (37)
121 PF13238 AAA_18: AAA domain; P 66.8 6.9 0.00015 26.7 3.0 19 78-96 96-114 (129)
122 KOG1959 Glycosyl hydrolase, fa 66.8 32 0.0007 32.4 7.7 143 8-157 104-284 (996)
123 PRK15103 paraquat-inducible me 66.2 6.9 0.00015 33.7 3.4 41 93-133 9-49 (419)
124 cd02024 NRK1 Nicotinamide ribo 65.7 7.5 0.00016 29.6 3.2 43 46-97 112-154 (187)
125 PHA03136 thymidine kinase; Pro 64.5 27 0.00059 29.7 6.5 24 72-95 190-213 (378)
126 KOG2593 Transcription initiati 64.4 10 0.00022 32.6 3.9 62 95-156 129-196 (436)
127 TIGR00155 pqiA_fam integral me 64.0 9 0.0002 32.9 3.6 39 95-133 14-52 (403)
128 PRK13951 bifunctional shikimat 62.3 87 0.0019 27.6 9.5 20 75-94 93-112 (488)
129 COG2326 Uncharacterized conser 62.3 12 0.00026 30.1 3.8 41 58-99 164-204 (270)
130 cd02019 NK Nucleoside/nucleoti 59.2 12 0.00025 23.3 2.7 31 46-82 33-63 (69)
131 PRK06696 uridine kinase; Valid 55.8 37 0.0008 26.2 5.6 23 73-95 146-168 (223)
132 PF09538 FYDLN_acid: Protein o 55.2 11 0.00024 26.1 2.2 27 94-123 9-35 (108)
133 cd02022 DPCK Dephospho-coenzym 54.7 32 0.0007 25.5 4.9 23 73-95 121-143 (179)
134 TIGR00455 apsK adenylylsulfate 53.9 84 0.0018 23.2 7.1 42 46-90 91-132 (184)
135 COG4639 Predicted kinase [Gene 53.7 65 0.0014 24.1 6.2 66 28-94 51-117 (168)
136 TIGR03575 selen_PSTK_euk L-ser 53.5 1.1E+02 0.0024 25.6 8.3 47 48-95 130-176 (340)
137 cd00350 rubredoxin_like Rubred 53.4 15 0.00032 19.5 2.1 24 95-122 2-25 (33)
138 cd02025 PanK Pantothenate kina 53.2 20 0.00043 27.9 3.7 83 73-171 128-218 (220)
139 cd02023 UMPK Uridine monophosp 53.2 54 0.0012 24.5 6.0 23 73-95 118-140 (198)
140 cd00730 rubredoxin Rubredoxin; 52.9 20 0.00044 21.2 2.8 29 94-122 1-42 (50)
141 COG2240 PdxK Pyridoxal/pyridox 52.6 93 0.002 25.4 7.4 61 21-81 48-110 (281)
142 COG2452 Predicted site-specifi 51.7 41 0.0009 25.8 5.0 43 136-180 123-167 (193)
143 PF01591 6PF2K: 6-phosphofruct 51.2 66 0.0014 25.2 6.3 49 130-178 68-117 (222)
144 TIGR02300 FYDLN_acid conserved 50.9 15 0.00032 26.3 2.3 28 93-123 8-35 (129)
145 PRK09270 nucleoside triphospha 48.0 42 0.0009 26.0 4.8 44 47-95 139-182 (229)
146 PRK07429 phosphoribulokinase; 48.0 55 0.0012 27.2 5.7 40 46-95 106-146 (327)
147 PF01121 CoaE: Dephospho-CoA k 47.6 43 0.00093 25.2 4.6 23 73-95 122-144 (180)
148 PF14581 SseB_C: SseB protein 45.2 94 0.002 21.0 5.8 54 126-179 11-73 (108)
149 PF06414 Zeta_toxin: Zeta toxi 45.0 70 0.0015 24.1 5.5 50 45-95 93-142 (199)
150 KOG3220 Similar to bacterial d 44.5 1.3E+02 0.0029 23.5 6.8 66 75-179 127-192 (225)
151 PRK06266 transcription initiat 42.8 20 0.00043 27.1 2.1 47 95-144 118-167 (178)
152 cd01773 Faf1_like1_UBX Faf1 ik 40.9 11 0.00024 24.8 0.4 34 48-81 46-79 (82)
153 TIGR01663 PNK-3'Pase polynucle 38.9 2.1E+02 0.0045 25.6 8.1 50 46-96 421-470 (526)
154 PRK00889 adenylylsulfate kinas 38.2 85 0.0018 22.9 5.0 17 75-91 101-117 (175)
155 COG1439 Predicted nucleic acid 38.1 16 0.00034 27.7 0.9 30 94-129 139-168 (177)
156 PRK12724 flagellar biosynthesi 38.1 1.5E+02 0.0033 25.8 7.0 47 35-82 291-342 (432)
157 PF14240 YHYH: YHYH protein 37.1 14 0.00031 27.6 0.5 10 46-55 88-97 (166)
158 PF14453 ThiS-like: ThiS-like 36.2 19 0.00042 22.0 0.9 25 33-59 19-43 (57)
159 PRK01254 hypothetical protein; 36.0 3.6E+02 0.0079 25.1 9.8 94 47-155 561-657 (707)
160 PHA00729 NTP-binding motif con 35.8 1.9E+02 0.0041 22.8 6.7 24 73-96 118-141 (226)
161 PRK07667 uridine kinase; Provi 35.6 41 0.00088 25.4 2.9 22 73-94 138-159 (193)
162 COG1592 Rubrerythrin [Energy p 35.3 29 0.00063 26.0 1.9 23 95-122 135-157 (166)
163 KOG2812 Uncharacterized conser 35.3 17 0.00037 30.6 0.7 43 12-55 330-372 (426)
164 PTZ00301 uridine kinase; Provi 35.1 2E+02 0.0044 22.1 6.8 24 73-96 126-149 (210)
165 smart00531 TFIIE Transcription 34.4 28 0.0006 25.3 1.7 32 95-126 100-135 (147)
166 TIGR01110 mdcA malonate decarb 33.3 80 0.0017 28.2 4.6 50 14-68 13-62 (543)
167 PF11305 DUF3107: Protein of u 32.8 70 0.0015 20.6 3.2 23 159-181 13-35 (74)
168 PF07526 POX: Associated with 32.8 63 0.0014 23.4 3.3 25 131-155 85-109 (140)
169 PF06856 DUF1251: Protein of u 32.8 29 0.00063 24.6 1.5 19 43-61 54-72 (120)
170 TIGR02786 addB_alphas double-s 32.6 2.6E+02 0.0057 27.1 8.3 66 18-86 184-258 (1021)
171 KOG3698 Hyaluronoglucosaminida 32.5 81 0.0018 28.7 4.4 42 49-94 21-65 (891)
172 TIGR01206 lysW lysine biosynth 32.0 31 0.00067 20.8 1.3 34 96-129 4-37 (54)
173 TIGR00373 conserved hypothetic 31.8 25 0.00054 26.0 1.1 43 95-140 110-155 (158)
174 PRK06547 hypothetical protein; 30.4 57 0.0012 24.3 2.9 20 76-95 120-139 (172)
175 PRK00023 cmk cytidylate kinase 29.7 2.7E+02 0.0058 21.6 7.2 22 159-180 198-220 (225)
176 PF01591 6PF2K: 6-phosphofruct 29.0 2.8E+02 0.0061 21.7 7.8 112 9-150 68-179 (222)
177 PRK00955 hypothetical protein; 29.0 1.4E+02 0.003 27.4 5.4 90 46-155 481-573 (620)
178 smart00834 CxxC_CXXC_SSSS Puta 28.9 50 0.0011 17.8 1.8 28 96-123 7-35 (41)
179 PF11848 DUF3368: Domain of un 28.8 1.2E+02 0.0026 17.4 3.7 27 11-37 20-46 (48)
180 TIGR02098 MJ0042_CXXC MJ0042 f 28.2 27 0.00058 18.9 0.6 30 96-125 4-36 (38)
181 TIGR00017 cmk cytidylate kinas 27.9 2.9E+02 0.0062 21.3 7.7 38 45-94 120-158 (217)
182 COG1184 GCD2 Translation initi 27.8 2.1E+02 0.0046 23.7 5.9 80 5-88 102-185 (301)
183 cd01772 SAKS1_UBX SAKS1-like U 27.6 25 0.00055 22.6 0.5 49 32-81 27-78 (79)
184 cd02026 PRK Phosphoribulokinas 27.3 1E+02 0.0022 24.9 4.0 22 73-94 115-136 (273)
185 smart00574 POX domain associat 26.6 99 0.0021 22.5 3.4 25 131-155 85-109 (140)
186 PHA03134 thymidine kinase; Pro 26.3 2.2E+02 0.0047 24.0 5.8 21 75-95 165-185 (340)
187 PF00301 Rubredoxin: Rubredoxi 26.1 28 0.00061 20.3 0.4 14 95-108 2-15 (47)
188 COG4530 Uncharacterized protei 26.0 52 0.0011 23.0 1.8 29 93-124 8-36 (129)
189 TIGR00155 pqiA_fam integral me 25.9 94 0.002 26.7 3.7 34 95-133 216-249 (403)
190 PF09107 SelB-wing_3: Elongati 25.8 1.2E+02 0.0026 17.8 3.1 32 131-162 12-43 (50)
191 PF13878 zf-C2H2_3: zinc-finge 25.5 48 0.001 18.6 1.3 15 92-106 11-25 (41)
192 PF07295 DUF1451: Protein of u 25.1 53 0.0011 24.1 1.8 34 92-127 110-143 (146)
193 COG0572 Udk Uridine kinase [Nu 24.9 2.1E+02 0.0045 22.5 5.2 42 45-96 108-150 (218)
194 COG1102 Cmk Cytidylate kinase 24.5 3.2E+02 0.0069 20.7 8.3 24 72-95 89-112 (179)
195 PRK05541 adenylylsulfate kinas 24.3 70 0.0015 23.4 2.4 22 72-93 100-121 (176)
196 PF10798 YmgB: Biofilm develop 24.1 1.8E+02 0.004 17.8 4.0 33 10-42 5-37 (61)
197 PF11202 PRTase_1: Phosphoribo 24.0 3.9E+02 0.0084 21.6 7.5 75 7-81 95-187 (257)
198 COG2019 AdkA Archaeal adenylat 24.0 3.3E+02 0.0072 20.8 9.4 21 72-92 108-128 (189)
199 TIGR00511 ribulose_e2b2 ribose 23.9 2.5E+02 0.0054 23.0 5.8 82 6-91 99-184 (301)
200 PRK05756 pyridoxamine kinase; 23.5 3E+02 0.0064 21.9 6.1 59 22-81 50-111 (286)
201 PF08271 TF_Zn_Ribbon: TFIIB z 23.3 27 0.00058 19.6 -0.0 30 96-126 2-31 (43)
202 TIGR01935 NOT-MenG RraA famliy 23.3 73 0.0016 23.4 2.3 34 29-63 68-101 (150)
203 cd00729 rubredoxin_SM Rubredox 23.2 79 0.0017 16.9 1.8 24 95-122 3-26 (34)
204 PF09821 AAA_assoc_C: C-termin 22.3 1.9E+02 0.004 20.3 4.1 40 1-40 54-95 (120)
205 PF01348 Intron_maturas2: Type 22.3 1.3E+02 0.0028 21.8 3.4 56 78-154 4-59 (146)
206 PF11116 DUF2624: Protein of u 22.1 1.2E+02 0.0027 20.1 2.9 38 30-70 3-46 (85)
207 PF10107 Endonuc_Holl: Endonuc 22.0 59 0.0013 24.1 1.5 29 49-84 85-113 (156)
208 PLN02348 phosphoribulokinase 21.9 1.6E+02 0.0035 25.3 4.4 24 73-96 182-205 (395)
209 KOG0707 Guanylate kinase [Nucl 21.1 2.1E+02 0.0046 22.7 4.6 54 123-179 166-219 (231)
210 PRK09372 ribonuclease activity 21.1 92 0.002 23.1 2.5 33 30-63 73-105 (159)
211 PRK15103 paraquat-inducible me 21.1 1.3E+02 0.0029 26.0 3.7 33 95-133 222-254 (419)
212 PF03698 UPF0180: Uncharacteri 20.7 1.4E+02 0.003 19.5 2.9 23 158-180 57-80 (80)
213 PHA02436 hypothetical protein 20.6 94 0.002 18.0 1.9 22 158-179 10-31 (52)
214 PF11691 DUF3288: Protein of u 20.5 1.3E+02 0.0029 20.1 2.8 33 50-92 38-70 (90)
215 PF07931 CPT: Chloramphenicol 20.2 1.4E+02 0.0031 22.4 3.3 48 45-95 83-131 (174)
216 TIGR00687 pyridox_kin pyridoxa 20.2 3.6E+02 0.0079 21.4 6.0 60 22-82 50-112 (286)
No 1
>PLN02674 adenylate kinase
Probab=100.00 E-value=2.4e-51 Score=323.69 Aligned_cols=180 Identities=94% Similarity=1.364 Sum_probs=175.1
Q ss_pred ChhHHHhcCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCccEEEEe
Q 030234 1 MLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNF 80 (181)
Q Consensus 1 llr~~i~~~t~lg~~i~~~l~~G~~vpd~~v~~ll~~~l~~~~~~~G~iLdGfPrt~~Qa~~l~~~l~~~~~~p~~vi~L 80 (181)
|||++++++|++|+.+++++++|++|||+++..++.++|.+.++.+||||||||||..||+.|++++...+..|+.||+|
T Consensus 65 llR~~i~~~s~~g~~i~~~~~~G~lvpd~iv~~lv~~~l~~~~~~~g~ilDGfPRt~~Qa~~l~~~l~~~~~~~d~vi~l 144 (244)
T PLN02674 65 MLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTVVQAQKLDEMLAKQGAKIDKVLNF 144 (244)
T ss_pred HHHHHHhccChhhHHHHHHHHcCCccCHHHHHHHHHHHHhCcCcCCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEE
Confidence 58999999999999999999999999999999999999998888899999999999999999999998889999999999
Q ss_pred ecChHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCCEE
Q 030234 81 AIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVA 160 (181)
Q Consensus 81 ~~~~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~~r~dd~~~~i~~Rl~~y~~~~~~l~~~y~~~~~l~ 160 (181)
++|++++++|+++|++||.||++||..++||+.++.|+.||++|++|.||+++.+++||+.|++++.||++||+++|+++
T Consensus 145 ~v~~~~l~~Rl~gR~~~~~~g~~yn~~~~pp~~~~~~~~~g~~L~~R~DD~~e~i~~RL~~Y~~~t~pv~~~Y~~~g~l~ 224 (244)
T PLN02674 145 AIDDAILEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYAKKGVVA 224 (244)
T ss_pred ECCHHHHHHHHhccccccccCCccccccCCCcccCcccccCCccccCCCCCHHHHHHHHHHHHHHhHHHHHHHHhcCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCChHHHHHHHHHHhc
Q 030234 161 QLHAEKPPQEVTSEVQKALS 180 (181)
Q Consensus 161 ~Ida~~~~~~v~~~i~~~l~ 180 (181)
.|||++++++||++|..+|+
T Consensus 225 ~Ida~~~~~eV~~~i~~~l~ 244 (244)
T PLN02674 225 NLHAEKPPKEVTAEVQKALS 244 (244)
T ss_pred EEECCCCHHHHHHHHHHHhC
Confidence 99999999999999998874
No 2
>PRK14529 adenylate kinase; Provisional
Probab=100.00 E-value=1.8e-46 Score=292.79 Aligned_cols=179 Identities=32% Similarity=0.511 Sum_probs=164.2
Q ss_pred ChhHHHhcCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCccEEEEe
Q 030234 1 MLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNF 80 (181)
Q Consensus 1 llr~~i~~~t~lg~~i~~~l~~G~~vpd~~v~~ll~~~l~~~~~~~G~iLdGfPrt~~Qa~~l~~~l~~~~~~p~~vi~L 80 (181)
++|+++..+|++|+.++++|.+|.+|||++++++|.++|.+.+ .+||||||||||..||+.|++.++..++.|+.||+|
T Consensus 34 llr~~i~~~t~lg~~i~~~i~~G~lvpdei~~~lv~~~l~~~~-~~g~iLDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l 112 (223)
T PRK14529 34 IFREHIGGGTELGKKAKEYIDRGDLVPDDITIPMILETLKQDG-KNGWLLDGFPRNKVQAEKLWEALQKEGMKLDYVIEI 112 (223)
T ss_pred hhhhhccCCChHHHHHHHHHhccCcchHHHHHHHHHHHHhccC-CCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEE
Confidence 5899999999999999999999999999999999999998887 899999999999999999999888888999999999
Q ss_pred ecChHHHHHHHhCCCcCCCCCCccccCCC-CCCCC-CCCCCCCCCcccCCCCc-HHHHHHHHHHHHHh---cHHHHHHHh
Q 030234 81 AIDDAVLEERITGRWIHPSSGRTYHTKFA-PPKVP-GVDDVTGEPLIQRKDDT-AAVLKSRLEAFHKQ---TEPVIDYYS 154 (181)
Q Consensus 81 ~~~~~~~~~Rl~~r~~~~~tg~~y~~~~~-pp~~~-~~~~~~~~~l~~r~dd~-~~~i~~Rl~~y~~~---~~~l~~~y~ 154 (181)
++|++++++|+++|++|+.||..||..+. ||..+ ..|+.||++|++|.||+ +++|++||..|+++ +.++++||+
T Consensus 113 ~~~~~~l~~Rl~~R~~c~~~~~~~~~~~~~~p~~~~~~cd~~~~~l~~R~DD~~ee~i~~Rl~~y~~~~~~~~~~~~~y~ 192 (223)
T PRK14529 113 LLPREVAKNRIMGRRLCKNDNNHPNNIFIDAIKPDGDVCRVCGGELSTRADDQDEEAINKRHDIYYDTETGTLAAAYFFK 192 (223)
T ss_pred ECCHHHHHHHhhCCccccccCCcccccccCCCcccCCcCcCcCCccccCCCCCcHHHHHHHHHHHHHcccccchHHHHHh
Confidence 99999999999999999999876666554 45444 48999999999999996 78999999999997 568999999
Q ss_pred h-----cCCEEEEeCCCChHHHHHHHHHHhc
Q 030234 155 K-----KGIVAQLHAEKPPQEVTSEVQKALS 180 (181)
Q Consensus 155 ~-----~~~l~~Ida~~~~~~v~~~i~~~l~ 180 (181)
+ .++++.|||++++++|+++|.+.|+
T Consensus 193 ~~~~~~~~~~~~id~~~~~~~V~~~i~~~l~ 223 (223)
T PRK14529 193 DLAAKGSTKYIELDGEGSIDEIKETLLKQLS 223 (223)
T ss_pred hcccccCCeEEEEECCCCHHHHHHHHHHHhC
Confidence 6 6889999999999999999998874
No 3
>PRK14526 adenylate kinase; Provisional
Probab=100.00 E-value=3.3e-46 Score=290.02 Aligned_cols=175 Identities=35% Similarity=0.602 Sum_probs=165.8
Q ss_pred ChhHHHhcCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCccEEEEe
Q 030234 1 MLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNF 80 (181)
Q Consensus 1 llr~~i~~~t~lg~~i~~~l~~G~~vpd~~v~~ll~~~l~~~~~~~G~iLdGfPrt~~Qa~~l~~~l~~~~~~p~~vi~L 80 (181)
+||+++..+|++|+.++.++++|.+|||+++++++.++|.+.++..||||||||||..||+.|++.+ ....+|+|
T Consensus 34 llr~~~~~~t~~g~~i~~~~~~g~lvpd~~~~~lv~~~l~~~~~~~g~ilDGfPR~~~Qa~~l~~~~-----~~~~vi~l 108 (211)
T PRK14526 34 LFRENILNSTPLGKEIKQIVENGQLVPDSITIKIVEDKINTIKNNDNFILDGFPRNINQAKALDKFL-----PNIKIINF 108 (211)
T ss_pred HHHHhcccCChhhHHHHHHHHcCccCChHHHHHHHHHHHhcccccCcEEEECCCCCHHHHHHHHHhc-----CCCEEEEE
Confidence 4799999999999999999999999999999999999999887789999999999999999998642 23468889
Q ss_pred ecChHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCCEE
Q 030234 81 AIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVA 160 (181)
Q Consensus 81 ~~~~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~~r~dd~~~~i~~Rl~~y~~~~~~l~~~y~~~~~l~ 160 (181)
++|++++++|+++|++||.||++||..++||+.++.|+.|+++|++|.||+++.+++||..|++++.||++||...++++
T Consensus 109 ~~~~~~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~R~DD~~e~i~~Rl~~y~~~t~pv~~~y~~~~~~~ 188 (211)
T PRK14526 109 LIDEELLIKRLSGRRICKSCNNIFNIYTLPTKEKGICDVCKGDLYQRKDDKEESLKTRLQEYKLQTKPLIEFYSKCNRLN 188 (211)
T ss_pred ECCHHHHHHHHHCCCcccccCCccccccCCCCccCcCCCCCCeeeccCCCCHHHHHHHHHHHHHhhhHHHHHHHhcCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999989999
Q ss_pred EEeCCCChHHHHHHHHHHhc
Q 030234 161 QLHAEKPPQEVTSEVQKALS 180 (181)
Q Consensus 161 ~Ida~~~~~~v~~~i~~~l~ 180 (181)
.|||++++++||++|.+.|.
T Consensus 189 ~id~~~~~~~V~~~i~~~l~ 208 (211)
T PRK14526 189 NIDASKDIDEVKKKLIEIIS 208 (211)
T ss_pred EEECCCCHHHHHHHHHHHHc
Confidence 99999999999999999885
No 4
>PLN02459 probable adenylate kinase
Probab=100.00 E-value=4.7e-46 Score=295.06 Aligned_cols=173 Identities=32% Similarity=0.615 Sum_probs=160.5
Q ss_pred ChhHHHhcCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCC--CCCCCeEecCCCCCHHHHHHHHHHHHhcCCCccEEE
Q 030234 1 MLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKP--SCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVL 78 (181)
Q Consensus 1 llr~~i~~~t~lg~~i~~~l~~G~~vpd~~v~~ll~~~l~~~--~~~~G~iLdGfPrt~~Qa~~l~~~l~~~~~~p~~vi 78 (181)
|||++++.+|++|+.++++|.+|++|||++++.+|+++|.+. .+.+||||||||||..||+.|+.+ ..|+.||
T Consensus 63 llR~ei~~~t~lg~~i~~~~~~G~lVPdeiv~~ll~~~l~~~~~~~~~g~iLDGFPRt~~Qa~~Le~~-----~~id~Vi 137 (261)
T PLN02459 63 LVREEIKSSGPLGAQLKEIVNQGKLVPDEIIFSLLSKRLEAGEEEGESGFILDGFPRTVRQAEILEGV-----TDIDLVV 137 (261)
T ss_pred HHHHHHhccchhHHHHHHHHHcCCccCHHHHHHHHHHHHhcccccCCceEEEeCCCCCHHHHHHHHhc-----CCCCEEE
Confidence 589999999999999999999999999999999999999875 346999999999999999999864 4689999
Q ss_pred EeecChHHHHHHHhCCCcCCCCCCccccC-------------CCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHHh
Q 030234 79 NFAIDDAVLEERITGRWIHPSSGRTYHTK-------------FAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQ 145 (181)
Q Consensus 79 ~L~~~~~~~~~Rl~~r~~~~~tg~~y~~~-------------~~pp~~~~~~~~~~~~l~~r~dd~~~~i~~Rl~~y~~~ 145 (181)
+|+||++++++|+++|++||.||+.||.. ++||..+ ++.|+++|++|.||+++.+++||..|+++
T Consensus 138 ~L~v~d~~l~~Rl~gR~~~~~~g~~Yn~~~~~~~~~~~~~~~~~~p~~~--~~~~~~~L~~R~DD~~e~i~kRL~~Y~~~ 215 (261)
T PLN02459 138 NLKLREEVLVEKCLGRRICSECGKNFNVADIDLKGEDGRPGIVMPPLLP--PPECASKLITRADDTEEVVKARLRVYKEE 215 (261)
T ss_pred EEECCHHHHHHHhhccccccccCccccccccccccccccccccCCCCCC--CcccccccccCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999985 4677554 35789999999999999999999999999
Q ss_pred cHHHHHHHhhcCCEEEEeCCCChHHHHHHHHHHhc
Q 030234 146 TEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 180 (181)
Q Consensus 146 ~~~l~~~y~~~~~l~~Ida~~~~~~v~~~i~~~l~ 180 (181)
+.||++||.++|+++.|||++++++||++|.++|.
T Consensus 216 t~pv~~~Y~~~g~l~~id~~~~~~eV~~~i~~~l~ 250 (261)
T PLN02459 216 SQPVEDFYRKRGKLLEFELPGGIPETWPRLLQALN 250 (261)
T ss_pred hHHHHHHHHhcCCeEEEeCCCCHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999875
No 5
>PRK00279 adk adenylate kinase; Reviewed
Probab=100.00 E-value=1.3e-43 Score=276.58 Aligned_cols=181 Identities=52% Similarity=0.865 Sum_probs=174.5
Q ss_pred ChhHHHhcCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCccEEEEe
Q 030234 1 MLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNF 80 (181)
Q Consensus 1 llr~~i~~~t~lg~~i~~~l~~G~~vpd~~v~~ll~~~l~~~~~~~G~iLdGfPrt~~Qa~~l~~~l~~~~~~p~~vi~L 80 (181)
|+|+++..+++.|..++.++.+|.++|++++..++.++|.+.++.+||||||||||..||+.|++++...+..|+.||+|
T Consensus 34 l~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~~i~~~l~~~~~~~g~VlDGfPr~~~qa~~l~~~l~~~~~~~~~vi~l 113 (215)
T PRK00279 34 MLRAAVKAGTELGKEAKSYMDAGELVPDEIVIGLVKERLAQPDCKNGFLLDGFPRTIPQAEALDEMLKELGIKLDAVIEI 113 (215)
T ss_pred cHHHHHhccchHHHHHHHHHHcCCcCCHHHHHHHHHHHHhccCccCCEEEecCCCCHHHHHHHHHHHHHcCCCCCEEEEE
Confidence 58999999999999999999999999999999999999998887789999999999999999998888888899999999
Q ss_pred ecChHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCCEE
Q 030234 81 AIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVA 160 (181)
Q Consensus 81 ~~~~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~~r~dd~~~~i~~Rl~~y~~~~~~l~~~y~~~~~l~ 160 (181)
+||++++++|+.+|..||.||..||..++||+.++.|+.||++|.+|.||+++.+++||..|++++.+|++||++.+.++
T Consensus 114 ~~~~~~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~~l~~r~dd~~~~i~~Rl~~y~~~~~~i~~~y~~~~~~~ 193 (215)
T PRK00279 114 DVPDEELVERLSGRRICPACGRTYHVKFNPPKVEGKCDVCGEELIQRADDNEETVRKRLEVYHKQTAPLIDYYKKKGKLK 193 (215)
T ss_pred ECCHHHHHHHHhCCcccCccCCcccccCCCCCCcCcCcCCCCcccCCCCCCHHHHHHHHHHHHHhhHHHHHHHHhCCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999989999
Q ss_pred EEeCCCChHHHHHHHHHHhcC
Q 030234 161 QLHAEKPPQEVTSEVQKALSA 181 (181)
Q Consensus 161 ~Ida~~~~~~v~~~i~~~l~~ 181 (181)
.|||++++++||++|.+.|++
T Consensus 194 ~id~~~~~~~v~~~i~~~l~~ 214 (215)
T PRK00279 194 KIDGTGSIDEVFADILKALGK 214 (215)
T ss_pred EEECCCCHHHHHHHHHHHHhc
Confidence 999999999999999999864
No 6
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=100.00 E-value=6.4e-43 Score=271.71 Aligned_cols=177 Identities=53% Similarity=0.878 Sum_probs=166.2
Q ss_pred ChhHHHhcCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCC-CCCeEecCCCCCHHHHHHHHHHHHhcCCCccEEEE
Q 030234 1 MLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSC-QKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLN 79 (181)
Q Consensus 1 llr~~i~~~t~lg~~i~~~l~~G~~vpd~~v~~ll~~~l~~~~~-~~G~iLdGfPrt~~Qa~~l~~~l~~~~~~p~~vi~ 79 (181)
|+|+++..++++|..++.++.+|.+|||+++.+++.++|.+.++ .+||||||||||..||+.|++.+. ..|+.||+
T Consensus 33 llr~~~~~~~~~~~~~~~~~~~g~~vp~~~~~~l~~~~i~~~~~~~~~~ilDGfPrt~~Qa~~l~~~~~---~~~~~vi~ 109 (210)
T TIGR01351 33 LLRAEIKAGTPLGKKAKEYMEKGELVPDEIVNQLVKERLTQNQDNENGFILDGFPRTLSQAEALDALLK---EKIDAVIE 109 (210)
T ss_pred HHHHhhccccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccCCcEEEeCCCCCHHHHHHHHHHhc---cCCCEEEE
Confidence 57999999999999999999999999999999999999988544 689999999999999999987642 16999999
Q ss_pred eecChHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCCE
Q 030234 80 FAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIV 159 (181)
Q Consensus 80 L~~~~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~~r~dd~~~~i~~Rl~~y~~~~~~l~~~y~~~~~l 159 (181)
|++|++++++|+.+|++||.||+.||..++||+.+..|+.|+++|++|.||+++.+++|+..|++++.||++||.+++++
T Consensus 110 L~~~~~~~~~Rl~~R~~~~~~g~~y~~~~~~p~~~~~~~~~~~~l~~R~dD~~e~i~~Rl~~y~~~~~~v~~~y~~~~~~ 189 (210)
T TIGR01351 110 LDVPDEELVERLSGRRICPSCGRVYHLKFNPPKVPGCDDCTGELLIQREDDTEEVVKKRLEVYKEQTEPLIDYYKKRGIL 189 (210)
T ss_pred EECCHHHHHHHHHCCCccCCcCCccccccCCCccCCcCcccCCccccCCCCCHHHHHHHHHHHHHhhHHHHHHHHhCCCE
Confidence 99999999999999999999999999999999988889999999999999999999999999999999999999998999
Q ss_pred EEEeCCCChHHHHHHHHHHhc
Q 030234 160 AQLHAEKPPQEVTSEVQKALS 180 (181)
Q Consensus 160 ~~Ida~~~~~~v~~~i~~~l~ 180 (181)
+.|||++++++||+.|.+.|.
T Consensus 190 ~~id~~~~~~~v~~~i~~~l~ 210 (210)
T TIGR01351 190 VQIDGNGPIDEVWKRILEALK 210 (210)
T ss_pred EEEECCCCHHHHHHHHHHhhC
Confidence 999999999999999998873
No 7
>KOG3078 consensus Adenylate kinase [Nucleotide transport and metabolism]
Probab=100.00 E-value=2.4e-43 Score=273.57 Aligned_cols=175 Identities=54% Similarity=0.932 Sum_probs=166.9
Q ss_pred ChhHHHhcCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCccEEEEe
Q 030234 1 MLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNF 80 (181)
Q Consensus 1 llr~~i~~~t~lg~~i~~~l~~G~~vpd~~v~~ll~~~l~~~~~~~G~iLdGfPrt~~Qa~~l~~~l~~~~~~p~~vi~L 80 (181)
|+|++|+++|++|++++++|++|++|||++++.++..++....|++||+|||||||..||+.+. .++..+|.||.|
T Consensus 49 llr~~ia~~telg~~~~~~~~~g~lvpDeiv~~~l~~~l~~~~~~~~~ildg~Prt~~qa~~l~----~~~~~~d~Vi~l 124 (235)
T KOG3078|consen 49 LLRDEIASGTELGKEAKEAIDKGKLVPDEVVVRLLEKRLENPRCQKGFILDGFPRTVQQAEELL----DRIAQIDLVINL 124 (235)
T ss_pred HHHHHHhccCcHHHHHHHHHHhcCcCcHHHHHHHHHhhccccccccccccCCCCcchHHHHHHH----HccCCcceEEEe
Confidence 6899999999999999999999999999999998888888887899999999999999999743 457899999999
Q ss_pred ecChHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCCEE
Q 030234 81 AIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVA 160 (181)
Q Consensus 81 ~~~~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~~r~dd~~~~i~~Rl~~y~~~~~~l~~~y~~~~~l~ 160 (181)
+||++.+.+|+.+|++||.||+.||.+|+||+..+.+|.+|++|++|.||+++++++||..|++++.|+++||+..|++.
T Consensus 125 ~vp~~~L~~ri~~r~ihp~sG~~Yh~~~~pPk~~~~dDitgepL~qr~dD~~e~v~~rL~~y~~~~~pv~eyY~k~~~l~ 204 (235)
T KOG3078|consen 125 KVPEEVLVDRITGRRIHPASGRVYHLEFNPPKVPGKDDITGEPLIQREDDKPEVVKKRLKAYKEQTKPVLEYYKKKGVLI 204 (235)
T ss_pred cCCHHHHHHHHhcccccCcccceecccccCCccccccccccChhhcCccccHHHHHHHHHHHhhcchHHHHHHHhcCeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCChHHHHHHHHHHhc
Q 030234 161 QLHAEKPPQEVTSEVQKALS 180 (181)
Q Consensus 161 ~Ida~~~~~~v~~~i~~~l~ 180 (181)
.++|.. .++||..+...|+
T Consensus 205 ~~~~~~-~~~v~~~v~~~l~ 223 (235)
T KOG3078|consen 205 EFSGEK-PEEVFPNVYAFLS 223 (235)
T ss_pred eccCcc-hhHhHHHHHHHHH
Confidence 999999 8999999988774
No 8
>PTZ00088 adenylate kinase 1; Provisional
Probab=100.00 E-value=1.3e-41 Score=267.05 Aligned_cols=174 Identities=28% Similarity=0.558 Sum_probs=158.7
Q ss_pred ChhHHHhcCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHcC--CCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCccEEE
Q 030234 1 MLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKK--PSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVL 78 (181)
Q Consensus 1 llr~~i~~~t~lg~~i~~~l~~G~~vpd~~v~~ll~~~l~~--~~~~~G~iLdGfPrt~~Qa~~l~~~l~~~~~~p~~vi 78 (181)
+||++++.+|++|..+++++++|.+|||+++++++.+++.+ .++..||||||||||..||+.|++. ..|+.||
T Consensus 40 llr~~~~~~t~lg~~i~~~~~~G~lvpd~iv~~lv~~~l~~~~~~~~~g~iLDGfPRt~~Qa~~l~~~-----~~~~~vi 114 (229)
T PTZ00088 40 ILREEIKAKTTIGKEIQKVVTSGNLVPDNLVIAIVKDEIAKVTDDCFKGFILDGFPRNLKQCKELGKI-----TNIDLFV 114 (229)
T ss_pred HHHHHhhcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhhccccCceEEEecCCCCHHHHHHHHhc-----CCCCEEE
Confidence 58999999999999999999999999999999999999987 4556899999999999999998753 4799999
Q ss_pred EeecChHHHHHHHhCCCcCCCCCCccccCC-------CCCCC-CCCCCCCCC--CcccCCCCcHHHHHHHHHHHHHhcHH
Q 030234 79 NFAIDDAVLEERITGRWIHPSSGRTYHTKF-------APPKV-PGVDDVTGE--PLIQRKDDTAAVLKSRLEAFHKQTEP 148 (181)
Q Consensus 79 ~L~~~~~~~~~Rl~~r~~~~~tg~~y~~~~-------~pp~~-~~~~~~~~~--~l~~r~dd~~~~i~~Rl~~y~~~~~~ 148 (181)
+|++|++++++|+++|++||.||+.||..+ .||.. ++.|+.||. +|++|.||+++.+++||..|++++.|
T Consensus 115 ~l~~~~~~~~~Rl~~Rr~~~~~g~~y~~~~~~~~~~~~pp~~~~~~c~~~~~~~~l~~R~DD~~e~i~~Rl~~Y~~~t~p 194 (229)
T PTZ00088 115 NIYLPRNILIKKLLGRRICNTCNRNFNIAHIRSDPYDMPPILPPADCEGCKGNPKLQKRSDDTEEIVAHRLNTYESTNSP 194 (229)
T ss_pred EEeCCHHHHHHHHHcCcCCCccCCcceecccccccccCCCCCCCCcccccCCcccccCCCCCCHHHHHHHHHHHHHHhHH
Confidence 999999999999999999999999999973 34433 458999995 89999999999999999999999999
Q ss_pred HHHHHhhcCC-EEEE---eCCCChHHHHHHHHHHh
Q 030234 149 VIDYYSKKGI-VAQL---HAEKPPQEVTSEVQKAL 179 (181)
Q Consensus 149 l~~~y~~~~~-l~~I---da~~~~~~v~~~i~~~l 179 (181)
|++||.++|+ ++.| ||++++++|++.|.+.|
T Consensus 195 l~~~y~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 229 (229)
T PTZ00088 195 IIQFFKNENCNLVDFEITRGLRDFDDFYRIVLQRL 229 (229)
T ss_pred HHHHHHHcCCeEEEEecCCCCCCHHHHHHHHHhhC
Confidence 9999999999 9888 89999999999998754
No 9
>PRK14530 adenylate kinase; Provisional
Probab=100.00 E-value=6.7e-37 Score=238.66 Aligned_cols=172 Identities=39% Similarity=0.690 Sum_probs=157.3
Q ss_pred ChhHHH-----hcCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCcc
Q 030234 1 MLRAAV-----AAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVD 75 (181)
Q Consensus 1 llr~~i-----~~~t~lg~~i~~~l~~G~~vpd~~v~~ll~~~l~~~~~~~G~iLdGfPrt~~Qa~~l~~~l~~~~~~p~ 75 (181)
+||+++ ...++.|. ++.++.+|.++||+++..++..++.+ ..||||||||+|.+|++.|+.+ ..|+
T Consensus 37 ~lr~~~~~~~~~~~~~~~~-~~~~~~~g~~~~d~~~~~~l~~~l~~---~~~~IldG~pr~~~q~~~l~~~-----~~~d 107 (215)
T PRK14530 37 ALRANKQMDISDMDTEYDT-PGEYMDAGELVPDAVVNEIVEEALSD---ADGFVLDGYPRNLEQAEYLESI-----TDLD 107 (215)
T ss_pred HHHHhccCCcccccchHHH-HHHHHHcCCCCCHHHHHHHHHHHHhc---CCCEEEcCCCCCHHHHHHHHHh-----cCCC
Confidence 356666 44667776 78899999999999999999998854 3699999999999999988753 3589
Q ss_pred EEEEeecChHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHHhcHHHHHHHhh
Q 030234 76 KVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSK 155 (181)
Q Consensus 76 ~vi~L~~~~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~~r~dd~~~~i~~Rl~~y~~~~~~l~~~y~~ 155 (181)
.||+|++|++++++|+.+|+.|+.||..||..++||..++.|+.||++|.+|.||+++.+++||..|++++.||++||.+
T Consensus 108 ~vI~Ld~~~~~l~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~rl~~R~dD~~e~i~~Rl~~y~~~~~~v~~~y~~ 187 (215)
T PRK14530 108 VVLYLDVSEEELVDRLTGRRVCPDCGANYHVEFNQPEEEGVCDECGGELIQRDDDTEETVRERLDVFEENTEPVIEHYRD 187 (215)
T ss_pred EEEEEeCCHHHHHHHHhCCCcCcccCCccccCCCCCcccccCcccCCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCEEEEeCCCChHHHHHHHHHHhcC
Q 030234 156 KGIVAQLHAEKPPQEVTSEVQKALSA 181 (181)
Q Consensus 156 ~~~l~~Ida~~~~~~v~~~i~~~l~~ 181 (181)
.++++.|||++++++||+.|.+.|.+
T Consensus 188 ~~~~~~id~~~~~~~v~~~i~~~l~~ 213 (215)
T PRK14530 188 QGVLVEVDGEQTPDEVWADIQDAIDD 213 (215)
T ss_pred CCcEEEEECCCCHHHHHHHHHHHHhc
Confidence 88999999999999999999998863
No 10
>KOG3079 consensus Uridylate kinase/adenylate kinase [Nucleotide transport and metabolism]
Probab=100.00 E-value=3.3e-36 Score=224.21 Aligned_cols=151 Identities=34% Similarity=0.582 Sum_probs=140.1
Q ss_pred ChhHHHhc-CChHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCccEEEE
Q 030234 1 MLRAAVAA-KTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLN 79 (181)
Q Consensus 1 llr~~i~~-~t~lg~~i~~~l~~G~~vpd~~v~~ll~~~l~~~~~~~G~iLdGfPrt~~Qa~~l~~~l~~~~~~p~~vi~ 79 (181)
|||+|+++ +|+.|.+|+++|.+|.+||.+++.+||.+.|.+....+||+||||||+.+|+..|++.+. ..|++|++
T Consensus 42 LLR~E~~~~gse~g~~I~~~i~~G~iVP~ei~~~LL~~am~~~~~~~~fLIDGyPR~~~q~~~fe~~i~---~~~~fvl~ 118 (195)
T KOG3079|consen 42 LLRAEIASAGSERGALIKEIIKNGDLVPVEITLSLLEEAMRSSGDSNGFLIDGYPRNVDQLVEFERKIQ---GDPDFVLF 118 (195)
T ss_pred HHHHHHccccChHHHHHHHHHHcCCcCcHHHHHHHHHHHHHhcCCCCeEEecCCCCChHHHHHHHHHhc---CCCCEEEE
Confidence 69999998 999999999999999999999999999999988877788999999999999999998653 37999999
Q ss_pred eecChHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCCE
Q 030234 80 FAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIV 159 (181)
Q Consensus 80 L~~~~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~~r~dd~~~~i~~Rl~~y~~~~~~l~~~y~~~~~l 159 (181)
|+|+++++++|+++|.. + + .|.||+.+.+++|++.|++.+.||++||.+.|++
T Consensus 119 fdc~ee~~l~Rll~R~q---~---------------------~---~R~DDn~esikkR~et~~~~t~Pvi~~~e~kg~l 171 (195)
T KOG3079|consen 119 FDCPEETMLKRLLHRGQ---S---------------------N---SRSDDNEESIKKRLETYNKSTLPVIEYYEKKGKL 171 (195)
T ss_pred EeCCHHHHHHHHHhhcc---c---------------------C---CCCCCchHHHHHHHHHHHHcchHHHHHHHccCcE
Confidence 99999999999999963 1 1 2899999999999999999999999999999999
Q ss_pred EEEeCCCChHHHHHHHHHHhcC
Q 030234 160 AQLHAEKPPQEVTSEVQKALSA 181 (181)
Q Consensus 160 ~~Ida~~~~~~v~~~i~~~l~~ 181 (181)
+.|||+.++++||.++.+++++
T Consensus 172 ~~i~a~~~~d~Vf~~v~~~id~ 193 (195)
T KOG3079|consen 172 LKINAERSVDDVFEEVVTAIDA 193 (195)
T ss_pred EEecCCCCHHHHHHHHHHHhhc
Confidence 9999999999999999998864
No 11
>PLN02842 nucleotide kinase
Probab=100.00 E-value=2.9e-36 Score=257.10 Aligned_cols=170 Identities=35% Similarity=0.635 Sum_probs=157.2
Q ss_pred ChhHHHhcCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCC-CCCeEecCCCCCHHHHHHHHHHHHhcCCCccEEEE
Q 030234 1 MLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSC-QKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLN 79 (181)
Q Consensus 1 llr~~i~~~t~lg~~i~~~l~~G~~vpd~~v~~ll~~~l~~~~~-~~G~iLdGfPrt~~Qa~~l~~~l~~~~~~p~~vi~ 79 (181)
|||+++..+|++|+.|++++.+|+++||+++..++.+++.+.++ .+||||||||||..|++.|++ .+..||+||+
T Consensus 31 LLR~ev~~~T~iG~~Ire~l~~G~lvPdeiv~~ll~drl~~~~~~~~G~ILDGfPRt~~Qa~~Le~----~~~~PDlVI~ 106 (505)
T PLN02842 31 LLRAEVSAGTDIGKRAKEFMNSGRLVPDEIVIAMVTGRLSREDAKEKGWLLDGYPRSFAQAQSLEK----LKIRPDIFIL 106 (505)
T ss_pred HHHHHhccCCHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhCccccCCcEEEeCCCCcHHHHHHHHh----cCCCCCEEEE
Confidence 57999999999999999999999999999999999999988764 589999999999999998864 3578999999
Q ss_pred eecChHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCCE
Q 030234 80 FAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIV 159 (181)
Q Consensus 80 L~~~~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~~r~dd~~~~i~~Rl~~y~~~~~~l~~~y~~~~~l 159 (181)
|+||++++++|+.+|+.||.||.+||..++||..+. ++++|.+|.||+++.+++||..|++++.|+.++|.+ .+
T Consensus 107 LDvpdevlleRl~gR~~dp~tG~iYh~~~~pP~~~~----~~~rL~~R~DD~eE~IkkRL~~Y~~~t~pIl~~Y~~--rl 180 (505)
T PLN02842 107 LDVPDEILIDRCVGRRLDPVTGKIYHIKNFPPESEE----IKARLITRPDDTEEKVKARLQIYKKNAEAILSTYSD--IM 180 (505)
T ss_pred EeCCHHHHHHHHhccccccccCCccccccCCCCccc----cccccccCCCCCHHHHHHHHHHHHHHhhhHHHhcCc--EE
Confidence 999999999999999999999999999999997544 356899999999999999999999999999999975 68
Q ss_pred EEEeCCCChHHHHHHHHHHhc
Q 030234 160 AQLHAEKPPQEVTSEVQKALS 180 (181)
Q Consensus 160 ~~Ida~~~~~~v~~~i~~~l~ 180 (181)
+.|||++++++|+++|.+.|.
T Consensus 181 ~~IDAsqs~EeVfeeI~~iL~ 201 (505)
T PLN02842 181 VKIDGNRPKEVVFEEISSLLS 201 (505)
T ss_pred EEEECCCCHHHHHHHHHHHHH
Confidence 999999999999999998875
No 12
>PRK13808 adenylate kinase; Provisional
Probab=100.00 E-value=7.9e-36 Score=243.99 Aligned_cols=159 Identities=43% Similarity=0.689 Sum_probs=146.1
Q ss_pred ChhHHHhcCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCccEEEEe
Q 030234 1 MLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNF 80 (181)
Q Consensus 1 llr~~i~~~t~lg~~i~~~l~~G~~vpd~~v~~ll~~~l~~~~~~~G~iLdGfPrt~~Qa~~l~~~l~~~~~~p~~vi~L 80 (181)
|||+++..++++|..+.++|.+|.+|||++++.+|.++|.+.++.+||||||||||..||+.|+.++...++.||+||+|
T Consensus 34 lLR~~i~~~s~~g~~~~~~~~~G~lVPdeiv~~li~e~l~~~~~~~G~ILDGFPRt~~QA~~L~~ll~~~gi~PDlVI~L 113 (333)
T PRK13808 34 MLRAAVAAGTPVGLKAKDIMASGGLVPDEVVVGIISDRIEQPDAANGFILDGFPRTVPQAEALDALLKDKQLKLDAVVEL 113 (333)
T ss_pred HHHHHhhcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHhcccccCCEEEeCCCCCHHHHHHHHHHHHhcCCCcCeEEEE
Confidence 58999999999999999999999999999999999999998888899999999999999999998888888999999999
Q ss_pred ecChHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCCEE
Q 030234 81 AIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVA 160 (181)
Q Consensus 81 ~~~~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~~r~dd~~~~i~~Rl~~y~~~~~~l~~~y~~~~~l~ 160 (181)
+||++++++|+++|+.+..+ ++ ...|.||+++.+.+||..|++++.||++||.+.+.++
T Consensus 114 DVp~evll~Rl~~R~~~~~~-------------------rg--~~~R~DD~~E~i~kRL~~Y~~~t~PLl~~Y~e~~~lv 172 (333)
T PRK13808 114 RVNEGALLARVETRVAEMRA-------------------RG--EEVRADDTPEVLAKRLASYRAQTEPLVHYYSEKRKLL 172 (333)
T ss_pred ECCHHHHHHHHHcCcccccc-------------------cC--CccCCCCCHHHHHHHHHHHHHHhHHHHHHhhccCcEE
Confidence 99999999999999754211 11 1358999999999999999999999999999888999
Q ss_pred EEeCCCChHHHHHHHHHHhc
Q 030234 161 QLHAEKPPQEVTSEVQKALS 180 (181)
Q Consensus 161 ~Ida~~~~~~v~~~i~~~l~ 180 (181)
.|||++++++|+++|...|.
T Consensus 173 ~IDa~~siEEV~eeI~~~L~ 192 (333)
T PRK13808 173 TVDGMMTIDEVTREIGRVLA 192 (333)
T ss_pred EEECCCCHHHHHHHHHHHHH
Confidence 99999999999999999875
No 13
>PRK14528 adenylate kinase; Provisional
Probab=100.00 E-value=9e-35 Score=222.14 Aligned_cols=152 Identities=42% Similarity=0.736 Sum_probs=142.2
Q ss_pred ChhHHHhcCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCccEEEEe
Q 030234 1 MLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNF 80 (181)
Q Consensus 1 llr~~i~~~t~lg~~i~~~l~~G~~vpd~~v~~ll~~~l~~~~~~~G~iLdGfPrt~~Qa~~l~~~l~~~~~~p~~vi~L 80 (181)
++|++++.++++|..++.++.+|.++||+++..++.+++.+.++.+||||||||||.+||+.|++.+...+..||.||+|
T Consensus 35 ~lr~~~~~~~~~g~~~~~~~~~g~lvp~~~~~~~~~~~l~~~~~~~g~viDG~Pr~~~qa~~l~~~~~~~~~~~d~vI~L 114 (186)
T PRK14528 35 ILREAVKNQTAMGIEAKRYMDAGDLVPDSVVIGIIKDRIREADCKNGFLLDGFPRTVEQADALDALLKNEGKSIDKAINL 114 (186)
T ss_pred HHHHHhhcCCHHHHHHHHHHhCCCccCHHHHHHHHHHHHhCcCccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEE
Confidence 47899999999999999999999999999999999999998888899999999999999999998888778889999999
Q ss_pred ecChHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCCEE
Q 030234 81 AIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVA 160 (181)
Q Consensus 81 ~~~~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~~r~dd~~~~i~~Rl~~y~~~~~~l~~~y~~~~~l~ 160 (181)
+||++++++|+++|..+ ..|.||+++.+++|+..|++.+.||++||+.+|+++
T Consensus 115 d~~~~~~~~Rl~~R~~~---------------------------~gr~dd~~e~i~~Rl~~y~~~~~pv~~~y~~~~~~~ 167 (186)
T PRK14528 115 EVPDGELLKRLLGRAEI---------------------------EGRADDNEATIKNRLDNYNKKTLPLLDFYAAQKKLS 167 (186)
T ss_pred ECCHHHHHHHHhcCccc---------------------------cCCCCCCHHHHHHHHHHHHHHhHHHHHHHHhCCCEE
Confidence 99999999999999742 138899999999999999999999999999999999
Q ss_pred EEeCCCChHHHHHHHHHHh
Q 030234 161 QLHAEKPPQEVTSEVQKAL 179 (181)
Q Consensus 161 ~Ida~~~~~~v~~~i~~~l 179 (181)
.|||++++++|++.|.+.|
T Consensus 168 ~i~~~~~~~~v~~~~~~~~ 186 (186)
T PRK14528 168 QVNGVGSLEEVTSLIQKEL 186 (186)
T ss_pred EEECCCCHHHHHHHHHHhC
Confidence 9999999999999998764
No 14
>PRK14531 adenylate kinase; Provisional
Probab=100.00 E-value=2e-32 Score=208.57 Aligned_cols=147 Identities=40% Similarity=0.711 Sum_probs=138.1
Q ss_pred ChhHHHhcCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCccEEEEe
Q 030234 1 MLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNF 80 (181)
Q Consensus 1 llr~~i~~~t~lg~~i~~~l~~G~~vpd~~v~~ll~~~l~~~~~~~G~iLdGfPrt~~Qa~~l~~~l~~~~~~p~~vi~L 80 (181)
+||+++..++++|..++.++.+|.++||+++..++.++|.+.. ..||||||||||..||+.|++.+...+..|+.||+|
T Consensus 36 ~lr~~~~~~~~~~~~~~~~~~~G~~v~d~l~~~~~~~~l~~~~-~~g~ilDGfpr~~~q~~~~~~~~~~~~~~~~~vi~l 114 (183)
T PRK14531 36 LLRSEVAAGSALGQEAEAVMNRGELVSDALVLAIVESQLKALN-SGGWLLDGFPRTVAQAEALEPLLEELKQPIEAVVLL 114 (183)
T ss_pred HHHHHHhcCCHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhhcc-CCcEEEeCCCCCHHHHHHHHHHHHHcCCCCCeEEEE
Confidence 5899999999999999999999999999999999999997643 589999999999999999998888888899999999
Q ss_pred ecChHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCCEE
Q 030234 81 AIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVA 160 (181)
Q Consensus 81 ~~~~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~~r~dd~~~~i~~Rl~~y~~~~~~l~~~y~~~~~l~ 160 (181)
+||++++.+|+++|. |.||+++.+.+|+..|++.+.|+++||...+.++
T Consensus 115 ~~~~~~l~~Rl~~R~-------------------------------r~dD~~e~i~~Rl~~y~~~~~pv~~~y~~~~~~~ 163 (183)
T PRK14531 115 ELDDAVLIERLLARG-------------------------------RADDNEAVIRNRLEVYREKTAPLIDHYRQRGLLQ 163 (183)
T ss_pred ECCHHHHHHHhhcCC-------------------------------CCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEE
Confidence 999999999999983 6789999999999999999999999999888999
Q ss_pred EEeCCCChHHHHHHHHHHh
Q 030234 161 QLHAEKPPQEVTSEVQKAL 179 (181)
Q Consensus 161 ~Ida~~~~~~v~~~i~~~l 179 (181)
.|||++++++|+.+|.+.|
T Consensus 164 ~id~~~~~~~v~~~i~~~l 182 (183)
T PRK14531 164 SVEAQGSIEAITERIEKVL 182 (183)
T ss_pred EEECCCCHHHHHHHHHHHh
Confidence 9999999999999999876
No 15
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=100.00 E-value=4.9e-32 Score=207.14 Aligned_cols=162 Identities=54% Similarity=0.889 Sum_probs=147.2
Q ss_pred ChhHHHhcCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCccEEEEe
Q 030234 1 MLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNF 80 (181)
Q Consensus 1 llr~~i~~~t~lg~~i~~~l~~G~~vpd~~v~~ll~~~l~~~~~~~G~iLdGfPrt~~Qa~~l~~~l~~~~~~p~~vi~L 80 (181)
++|+++..++++|..++.++.+|..+|++++..++..+|.+.....||||||||+|..|++.|++.+.. ...|+.+|+|
T Consensus 33 l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~l~~~~~~~~~vldg~Pr~~~q~~~l~~~~~~-~~~~~~~i~l 111 (194)
T cd01428 33 LLREEIASGTELGKKAKEYIDSGKLVPDEIVIKLLKERLKKPDCKKGFILDGFPRTVDQAEALDELLDE-GIKPDKVIEL 111 (194)
T ss_pred HHHHHHhcCChHHHHHHHHHHcCCccCHHHHHHHHHHHHhcccccCCEEEeCCCCCHHHHHHHHHHHhc-CCCCCEEEEE
Confidence 478888889999999999999999999999999999999877666899999999999999999876532 3479999999
Q ss_pred ecChHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCCEE
Q 030234 81 AIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVA 160 (181)
Q Consensus 81 ~~~~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~~r~dd~~~~i~~Rl~~y~~~~~~l~~~y~~~~~l~ 160 (181)
++|++++.+|+.+|..|+.||..||. ..|+.|+.+|.+|.+|+++.+++|+..|++++.++++||.+.+.++
T Consensus 112 ~~~~~~~~~Rl~~R~~~~~~~~~~~~--------~~~~~~~~~l~~r~dd~~~~i~~R~~~y~~~~~~i~~~~~~~~~~~ 183 (194)
T cd01428 112 DVPDEVLIERILGRRICPVSGRVYHL--------GKDDVTGEPLSQRSDDNEETIKKRLEVYKEQTAPLIDYYKKKGKLV 183 (194)
T ss_pred ECCHHHHHHHHHcCCcCCCcCCcCCc--------CCCcccCCccccCCCCCHHHHHHHHHHHHHhHHHHHHHHHhCCCEE
Confidence 99999999999999999999999999 2344567889999999999999999999999999999999989999
Q ss_pred EEeCCCChHHH
Q 030234 161 QLHAEKPPQEV 171 (181)
Q Consensus 161 ~Ida~~~~~~v 171 (181)
.|||++++++|
T Consensus 184 ~id~~~~~~~v 194 (194)
T cd01428 184 EIDGSGDIDEV 194 (194)
T ss_pred EEECCCCcCcC
Confidence 99999998864
No 16
>PRK14532 adenylate kinase; Provisional
Probab=100.00 E-value=1.5e-31 Score=204.25 Aligned_cols=153 Identities=40% Similarity=0.696 Sum_probs=142.5
Q ss_pred ChhHHHhcCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCccEEEEe
Q 030234 1 MLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNF 80 (181)
Q Consensus 1 llr~~i~~~t~lg~~i~~~l~~G~~vpd~~v~~ll~~~l~~~~~~~G~iLdGfPrt~~Qa~~l~~~l~~~~~~p~~vi~L 80 (181)
+||+++..++++|..+++++++|+++||+++.+++.+++...++..||||||||||..|++.|++++...+..||.+|+|
T Consensus 34 ~lr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~vldg~pr~~~q~~~~~~~l~~~g~~pd~vi~L 113 (188)
T PRK14532 34 MLRAAIASGSELGQRVKGIMDRGELVSDEIVIALIEERLPEAEAAGGAIFDGFPRTVAQAEALDKMLASRGQKIDVVIRL 113 (188)
T ss_pred HHHHHHHcCCHHHHHHHHHHHCCCccCHHHHHHHHHHHHhCcCccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEE
Confidence 57999999999999999999999999999999999999988877899999999999999999998888888999999999
Q ss_pred ecChHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCCEE
Q 030234 81 AIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVA 160 (181)
Q Consensus 81 ~~~~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~~r~dd~~~~i~~Rl~~y~~~~~~l~~~y~~~~~l~ 160 (181)
++|++++.+|+++|..+ ..|++|+++.+.+|+..|.+++.++++||.+.+.++
T Consensus 114 ~v~~~~~~~Rl~~R~~~---------------------------~~r~dd~~~~~~~Rl~~~~~~~~~i~~~y~~~~~~~ 166 (188)
T PRK14532 114 KVDDEALIERIVKRFEE---------------------------QGRPDDNPEVFVTRLDAYNAQTAPLLPYYAGQGKLT 166 (188)
T ss_pred ECCHHHHHHHHHcCcCc---------------------------CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEE
Confidence 99999999999998632 137899999999999999999999999999888899
Q ss_pred EEeCCCChHHHHHHHHHHhc
Q 030234 161 QLHAEKPPQEVTSEVQKALS 180 (181)
Q Consensus 161 ~Ida~~~~~~v~~~i~~~l~ 180 (181)
.|||++++++|+++|.+.|+
T Consensus 167 ~id~~~~~eev~~~I~~~l~ 186 (188)
T PRK14532 167 EVDGMGSIEAVAASIDAALE 186 (188)
T ss_pred EEECCCCHHHHHHHHHHHHh
Confidence 99999999999999999875
No 17
>PRK02496 adk adenylate kinase; Provisional
Probab=100.00 E-value=3e-31 Score=201.98 Aligned_cols=150 Identities=43% Similarity=0.761 Sum_probs=139.8
Q ss_pred ChhHHHhcCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCccEEEEe
Q 030234 1 MLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNF 80 (181)
Q Consensus 1 llr~~i~~~t~lg~~i~~~l~~G~~vpd~~v~~ll~~~l~~~~~~~G~iLdGfPrt~~Qa~~l~~~l~~~~~~p~~vi~L 80 (181)
++|+++..++++|..++.++.+|.++|++++..++.+++.+.++..||||||||||..|++.|++.+...+..|+.+|+|
T Consensus 35 ~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~g~vldGfPr~~~q~~~l~~~~~~~~~~~~~vi~l 114 (184)
T PRK02496 35 ILRQAIKEQTPLGIKAQGYMDKGELVPDQLVLDLVQERLQQPDAANGWILDGFPRKVTQAAFLDELLQEIGQSGERVVNL 114 (184)
T ss_pred HHHHHHhccChhHHHHHHHHHCCCccCHHHHHHHHHHHHhCcCccCCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEE
Confidence 46888889999999999999999999999999999999988888899999999999999999998887778889999999
Q ss_pred ecChHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCCEE
Q 030234 81 AIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVA 160 (181)
Q Consensus 81 ~~~~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~~r~dd~~~~i~~Rl~~y~~~~~~l~~~y~~~~~l~ 160 (181)
++|++++.+|+.+|. |.||+++.+++|+..|++++.|+.+||+.++.++
T Consensus 115 ~~~~~~~~~Rl~~R~-------------------------------~~dd~~~~~~~r~~~y~~~~~~v~~~~~~~~~~~ 163 (184)
T PRK02496 115 DVPDDVVVERLLARG-------------------------------RKDDTEEVIRRRLEVYREQTAPLIDYYRDRQKLL 163 (184)
T ss_pred eCCHHHHHHHHhcCC-------------------------------CCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEE
Confidence 999999999999883 5678899999999999999999999999888899
Q ss_pred EEeCCCChHHHHHHHHHHhcC
Q 030234 161 QLHAEKPPQEVTSEVQKALSA 181 (181)
Q Consensus 161 ~Ida~~~~~~v~~~i~~~l~~ 181 (181)
.|||++++++|+++|.+.|.+
T Consensus 164 ~Ida~~~~~~V~~~i~~~l~~ 184 (184)
T PRK02496 164 TIDGNQSVEAVTTELKAALAP 184 (184)
T ss_pred EEECCCCHHHHHHHHHHHhCc
Confidence 999999999999999998853
No 18
>PRK14527 adenylate kinase; Provisional
Probab=100.00 E-value=5.4e-31 Score=201.89 Aligned_cols=151 Identities=35% Similarity=0.583 Sum_probs=140.0
Q ss_pred ChhHHHhcCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCccEEEEe
Q 030234 1 MLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNF 80 (181)
Q Consensus 1 llr~~i~~~t~lg~~i~~~l~~G~~vpd~~v~~ll~~~l~~~~~~~G~iLdGfPrt~~Qa~~l~~~l~~~~~~p~~vi~L 80 (181)
++|+++..++++|..++.++.+|..+|++++..++.+++.+.++ .||||||||+|..|++.|+..+...+..++.||+|
T Consensus 40 ~~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~l~~~~l~~~~~-~~~VlDGfpr~~~q~~~~~~~~~~~g~~~~~vi~l 118 (191)
T PRK14527 40 ILRDHVARGTELGQRAKPIMEAGDLVPDELILALIRDELAGMEP-VRVIFDGFPRTLAQAEALDRLLEELGARLLAVVLL 118 (191)
T ss_pred HHHHHHhcCcHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCC-CcEEEcCCCCCHHHHHHHHHHHHHcCCCCCEEEEE
Confidence 46888888999999999999999999999999999999987765 68999999999999999998888888899999999
Q ss_pred ecChHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCCEE
Q 030234 81 AIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVA 160 (181)
Q Consensus 81 ~~~~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~~r~dd~~~~i~~Rl~~y~~~~~~l~~~y~~~~~l~ 160 (181)
++|++++++|+.+|..+ ..|.||+++.+.+|+..|++++.||++||++.+.++
T Consensus 119 ~~~~~~~~~Rl~~R~~~---------------------------~~r~dd~~~~~~~R~~~y~~~~~~v~~~y~~~~~~~ 171 (191)
T PRK14527 119 EVPDEELIRRIVERARQ---------------------------EGRSDDNEETVRRRQQVYREQTQPLVDYYEARGHLK 171 (191)
T ss_pred ECCHHHHHHHHHcCccc---------------------------CCCCCCCHHHHHHHHHHHHHHhHHHHHHHHhcCCEE
Confidence 99999999999999632 248899999999999999999999999999989999
Q ss_pred EEeCCCChHHHHHHHHHHh
Q 030234 161 QLHAEKPPQEVTSEVQKAL 179 (181)
Q Consensus 161 ~Ida~~~~~~v~~~i~~~l 179 (181)
.|||++++++||++|...|
T Consensus 172 ~id~~~~~~~v~~~i~~~l 190 (191)
T PRK14527 172 RVDGLGTPDEVYARILKAL 190 (191)
T ss_pred EEECCCCHHHHHHHHHHhh
Confidence 9999999999999999876
No 19
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=99.97 E-value=2.8e-30 Score=190.89 Aligned_cols=122 Identities=43% Similarity=0.810 Sum_probs=109.1
Q ss_pred ChhHHHhcCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCccEEEEe
Q 030234 1 MLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNF 80 (181)
Q Consensus 1 llr~~i~~~t~lg~~i~~~l~~G~~vpd~~v~~ll~~~l~~~~~~~G~iLdGfPrt~~Qa~~l~~~l~~~~~~p~~vi~L 80 (181)
|||++++.+|++|..+++++.+|++|||++++++|..+|.+..+.+||||||||||.+||+.|++.+...+..|+.||+|
T Consensus 30 llr~~~~~~s~~g~~i~~~l~~g~~vp~~~v~~ll~~~l~~~~~~~g~ildGfPrt~~Qa~~l~~~~~~~~~~~~~vi~L 109 (151)
T PF00406_consen 30 LLREEIKSDSELGKQIQEYLDNGELVPDELVIELLKERLEQPPCNRGFILDGFPRTLEQAEALEEILEEEGIPPDLVIFL 109 (151)
T ss_dssp HHHHHHHTTSHHHHHHHHHHHTTSS--HHHHHHHHHHHHHSGGTTTEEEEESB-SSHHHHHHHHHHHHHTTSEESEEEEE
T ss_pred HHHHHHhhhhHHHHHHHHHHHhhccchHHHHHHHHHHHHhhhcccceeeeeeccccHHHHHHHHHHHhhcccchheeecc
Confidence 58999999999999999999999999999999999999998866799999999999999999998887788999999999
Q ss_pred ecChHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCC
Q 030234 81 AIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGI 158 (181)
Q Consensus 81 ~~~~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~~r~dd~~~~i~~Rl~~y~~~~~~l~~~y~~~~~ 158 (181)
+||++++.+|+++ |+.+.+++|++.|++++.|+++||+++|+
T Consensus 110 ~~~~~~~~~R~~~------------------------------------d~~~~i~~Rl~~y~~~~~~i~~~y~~~g~ 151 (151)
T PF00406_consen 110 DCPDETLIERLSQ------------------------------------DNEEVIKKRLEEYRENTEPILDYYKEQGK 151 (151)
T ss_dssp E--HHHHHHHHHT------------------------------------GSHHHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred ccchhhhhhhccc------------------------------------CCHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 9999999999885 56789999999999999999999998763
No 20
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=99.97 E-value=3.8e-29 Score=189.52 Aligned_cols=145 Identities=43% Similarity=0.781 Sum_probs=137.7
Q ss_pred ChhHHHhcCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCccEEEEe
Q 030234 1 MLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNF 80 (181)
Q Consensus 1 llr~~i~~~t~lg~~i~~~l~~G~~vpd~~v~~ll~~~l~~~~~~~G~iLdGfPrt~~Qa~~l~~~l~~~~~~p~~vi~L 80 (181)
++|.++...|++|.+++.+|++|++|||+++..++..++.+.+|..|||+||||||+.||+.|+..|...|..++.++.+
T Consensus 34 ~~r~~~~~~t~lg~~~k~~i~~g~lv~d~i~~~~v~~rl~~~d~~~~~I~dg~PR~~~qa~~l~r~l~~~g~~~d~v~~~ 113 (178)
T COG0563 34 ILRAAIAERTELGEEIKKYIDKGELVPDEIVNGLVKERLDEADCKAGFILDGFPRTLCQARALKRLLKELGVRLDMVIEL 113 (178)
T ss_pred HhHhhhccCChHHHHHHHHHHcCCccchHHHHHHHHHHHHhhcccCeEEEeCCCCcHHHHHHHHHHHHHcCCCcceEEee
Confidence 47899999999999999999999999999999999999999888779999999999999999999999988999999999
Q ss_pred ecChHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCCEE
Q 030234 81 AIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVA 160 (181)
Q Consensus 81 ~~~~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~~r~dd~~~~i~~Rl~~y~~~~~~l~~~y~~~~~l~ 160 (181)
+++++.++.|+.+|++ |.||+++.+++|+..|++.+.|+..||+ +
T Consensus 114 ~~~~~~~~~r~~~r~~------------------------------r~dd~~~~~~~R~~~y~~~~~pli~~y~-----~ 158 (178)
T COG0563 114 DVPEELLLERLLGRRV------------------------------REDDNEETVKKRLKVYHEQTAPLIEYYS-----V 158 (178)
T ss_pred eCCHHHHHHHHhCccc------------------------------cccCCHHHHHHHHHHHHhcccchhhhhe-----e
Confidence 9999999999999862 8899999999999999999999999997 8
Q ss_pred EEeCCCChHHHHHHHHHHhc
Q 030234 161 QLHAEKPPQEVTSEVQKALS 180 (181)
Q Consensus 161 ~Ida~~~~~~v~~~i~~~l~ 180 (181)
.|||.+++++|++++.+.+.
T Consensus 159 ~id~~~~i~~v~~~i~~~l~ 178 (178)
T COG0563 159 TIDGSGEIEEVLADILKALS 178 (178)
T ss_pred eccCCCCHHHHHHHHHHhhC
Confidence 99999999999999988763
No 21
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=99.97 E-value=2.2e-28 Score=185.62 Aligned_cols=150 Identities=28% Similarity=0.503 Sum_probs=135.7
Q ss_pred ChhHHHhcCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCccEEEEe
Q 030234 1 MLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNF 80 (181)
Q Consensus 1 llr~~i~~~t~lg~~i~~~l~~G~~vpd~~v~~ll~~~l~~~~~~~G~iLdGfPrt~~Qa~~l~~~l~~~~~~p~~vi~L 80 (181)
++|+++..+++.|+.++.++.+|..+|++++..++.+++.... .+||||||||||..|++.|.+.+. .+..|+.+|+|
T Consensus 33 ~lr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~-~~~~vlDg~p~~~~q~~~~~~~~~-~~~~~d~~i~l 110 (183)
T TIGR01359 33 LLRAEIKSGSENGELIESMIKNGKIVPSEVTVKLLKNAIQADG-SKKFLIDGFPRNEENLEAWEKLMD-NKVNFKFVLFF 110 (183)
T ss_pred HHHHHHhcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHhccC-CCcEEEeCCCCCHHHHHHHHHHHh-cCCCCCEEEEE
Confidence 4789999889999999999999999999999999999998765 689999999999999999987653 44689999999
Q ss_pred ecChHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCCEE
Q 030234 81 AIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVA 160 (181)
Q Consensus 81 ~~~~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~~r~dd~~~~i~~Rl~~y~~~~~~l~~~y~~~~~l~ 160 (181)
++|++++.+|+..|... ..|.+|+.+.+++|+..|.+.+.++.+||...+.++
T Consensus 111 ~~~~~~~~~Rl~~R~~~---------------------------~~r~dd~~e~~~~r~~~y~~~~~~i~~~~~~~~~~~ 163 (183)
T TIGR01359 111 DCPEEVMIKRLLKRGQS---------------------------SGRVDDNIESIKKRFRTYNEQTLPVIEHYENKGKVK 163 (183)
T ss_pred ECCHHHHHHHHhcCCcc---------------------------CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCEE
Confidence 99999999999998531 136788999999999999999999999999888899
Q ss_pred EEeCCCChHHHHHHHHHHh
Q 030234 161 QLHAEKPPQEVTSEVQKAL 179 (181)
Q Consensus 161 ~Ida~~~~~~v~~~i~~~l 179 (181)
.|||++++++|+++|.+.|
T Consensus 164 ~Id~~~~~~~v~~~i~~~l 182 (183)
T TIGR01359 164 EINAEGSVEEVFEDVEKIF 182 (183)
T ss_pred EEECCCCHHHHHHHHHHHh
Confidence 9999999999999999876
No 22
>PLN02200 adenylate kinase family protein
Probab=99.96 E-value=2.6e-28 Score=192.55 Aligned_cols=147 Identities=29% Similarity=0.537 Sum_probs=134.4
Q ss_pred ChhHHHhcCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCccEEEEe
Q 030234 1 MLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNF 80 (181)
Q Consensus 1 llr~~i~~~t~lg~~i~~~l~~G~~vpd~~v~~ll~~~l~~~~~~~G~iLdGfPrt~~Qa~~l~~~l~~~~~~p~~vi~L 80 (181)
|+|+++...++.|..+.+++.+|+++||+++..++.+++...+ .+||||||||||..|+..|++.+ +..||.||+|
T Consensus 77 llR~~i~~~s~~~~~i~~~~~~G~~vp~e~~~~~l~~~l~~~~-~~~~ILDG~Prt~~q~~~l~~~~---~~~pd~vi~L 152 (234)
T PLN02200 77 LLRREIASNSEHGAMILNTIKEGKIVPSEVTVKLIQKEMESSD-NNKFLIDGFPRTEENRIAFERII---GAEPNVVLFF 152 (234)
T ss_pred HHHHHHhccChhHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC-CCeEEecCCcccHHHHHHHHHHh---ccCCCEEEEE
Confidence 5799999999999999999999999999999999999997654 47999999999999999987654 4679999999
Q ss_pred ecChHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCCEE
Q 030234 81 AIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVA 160 (181)
Q Consensus 81 ~~~~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~~r~dd~~~~i~~Rl~~y~~~~~~l~~~y~~~~~l~ 160 (181)
++|++++++|+.+|.. .|.||+.+.+++|++.|++.+.|+++||++.+.++
T Consensus 153 d~~~e~~~~Rl~~R~~-----------------------------~r~dd~~e~~~~Rl~~y~~~~~pv~~~y~~~~~~~ 203 (234)
T PLN02200 153 DCPEEEMVKRVLNRNQ-----------------------------GRVDDNIDTIKKRLKVFNALNLPVIDYYSKKGKLY 203 (234)
T ss_pred ECCHHHHHHHHHcCcC-----------------------------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEE
Confidence 9999999999998852 27788999999999999999999999999888899
Q ss_pred EEeCCCChHHHHHHHHHHhc
Q 030234 161 QLHAEKPPQEVTSEVQKALS 180 (181)
Q Consensus 161 ~Ida~~~~~~v~~~i~~~l~ 180 (181)
.|||++++++|++.|.+.|.
T Consensus 204 ~IDa~~~~eeV~~~v~~~l~ 223 (234)
T PLN02200 204 TINAVGTVDEIFEQVRPIFA 223 (234)
T ss_pred EEECCCCHHHHHHHHHHHHH
Confidence 99999999999999998764
No 23
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=99.92 E-value=3.2e-23 Score=157.50 Aligned_cols=149 Identities=33% Similarity=0.515 Sum_probs=130.7
Q ss_pred ChhHHHhcCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCC-CCCCeEecCCCCCHHHHHHHHHHHHhcCCCccEEEE
Q 030234 1 MLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPS-CQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLN 79 (181)
Q Consensus 1 llr~~i~~~t~lg~~i~~~l~~G~~vpd~~v~~ll~~~l~~~~-~~~G~iLdGfPrt~~Qa~~l~~~l~~~~~~p~~vi~ 79 (181)
++|+++..+++.|+.++.++.+|.++|++.+.+++..++...- ...|||+||||++..|++.|... ...|+.+|+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~dg~~~~~~q~~~~~~~----~~~~~~vi~ 112 (188)
T TIGR01360 37 LLRAEVASGSERGKQLQAIMESGDLVPLDTVLDLLKDAMVAALGTSKGFLIDGYPREVKQGEEFERR----IGPPTLVLY 112 (188)
T ss_pred HHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcccCcCCeEEEeCCCCCHHHHHHHHHc----CCCCCEEEE
Confidence 3677777889999999999999999999999999999886543 35799999999999999987643 256999999
Q ss_pred eecChHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCCE
Q 030234 80 FAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIV 159 (181)
Q Consensus 80 L~~~~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~~r~dd~~~~i~~Rl~~y~~~~~~l~~~y~~~~~l 159 (181)
|++|.+++.+|+.+|.. ...|.|++++.+.+|+..|.+++.++.++|...+.+
T Consensus 113 l~~~~~~~~~Rl~~R~~---------------------------~~~r~d~~~~~~~~r~~~~~~~~~~~~~~y~~~~~~ 165 (188)
T TIGR01360 113 FDCSEDTMVKRLLKRAE---------------------------TSGRVDDNEKTIKKRLETYYKATEPVIAYYETKGKL 165 (188)
T ss_pred EECCHHHHHHHHHcccc---------------------------cCCCCCCCHHHHHHHHHHHHHhhHHHHHHHHhCCCE
Confidence 99999999999998852 013788899999999999999999999999877789
Q ss_pred EEEeCCCChHHHHHHHHHHhc
Q 030234 160 AQLHAEKPPQEVTSEVQKALS 180 (181)
Q Consensus 160 ~~Ida~~~~~~v~~~i~~~l~ 180 (181)
+.|||++++++|++.|.+.|+
T Consensus 166 ~~id~~~~~~~v~~~i~~~l~ 186 (188)
T TIGR01360 166 RKINAEGTVDDVFLQVCTAID 186 (188)
T ss_pred EEEECCCCHHHHHHHHHHHHh
Confidence 999999999999999999875
No 24
>PRK13974 thymidylate kinase; Provisional
Probab=99.65 E-value=3.5e-15 Score=116.14 Aligned_cols=136 Identities=15% Similarity=0.227 Sum_probs=106.4
Q ss_pred cCChHHHHHHHHHH--CCCCCCHHHHHHHH--HHHHcC------CCCCCC-eEe-----------cCCCCCHHH--HHHH
Q 030234 8 AKTPLGIKAKEAMD--KGELVSDDLVVGII--DEAMKK------PSCQKG-FIL-----------DGFPRTEVQ--AQKL 63 (181)
Q Consensus 8 ~~t~lg~~i~~~l~--~G~~vpd~~v~~ll--~~~l~~------~~~~~G-~iL-----------dGfPrt~~Q--a~~l 63 (181)
.+|++|+.|++++. .|..+|+..+..++ .+|..+ +...+| +|| +|||++..+ +..+
T Consensus 46 ~~~~~g~~ir~~l~~~~~~~~~~~~~~~llf~adr~~~~~~~i~~~l~~g~~Vi~DRy~~S~~ay~g~~r~~~~~~~~~l 125 (212)
T PRK13974 46 GGTLLGKSLRELLLDTSKDNSPSPLAELLLYAADRAQHVSKIIRPALENGDWVISDRFSGSTLAYQGYGRGLDLELIKNL 125 (212)
T ss_pred CCCchHHHHHHHHcCCCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEcCchhhHHHHccccCCCCHHHHHHH
Confidence 46899999999996 45678898887777 344211 112345 888 999997665 5666
Q ss_pred HHHHHhcCCCccEEEEeecChHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHH
Q 030234 64 DEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFH 143 (181)
Q Consensus 64 ~~~l~~~~~~p~~vi~L~~~~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~~r~dd~~~~i~~Rl~~y~ 143 (181)
+..+. .+..||++|+|+||++++.+|+.+|. +| .+..|...|+
T Consensus 126 ~~~~~-~~~~pd~~i~ld~~~~~~~~R~~~R~---------------------------------dD---~~e~~~~~y~ 168 (212)
T PRK13974 126 ESIAT-QGLSPDLTFFLEISVEESIRRRKNRK---------------------------------PD---RIEAEGIEFL 168 (212)
T ss_pred HHHHh-CCCCCCEEEEEeCCHHHHHHHHHhcc---------------------------------cC---chhhhhHHHH
Confidence 55332 35789999999999999999998762 12 2556788999
Q ss_pred HhcHHHHHHHhhcCCEEEEeCCCChHHHHHHHHHHhc
Q 030234 144 KQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 180 (181)
Q Consensus 144 ~~~~~l~~~y~~~~~l~~Ida~~~~~~v~~~i~~~l~ 180 (181)
+.+.++..+|.+.+.++.|||++++++|+++|.+.|.
T Consensus 169 ~~v~~~y~~y~~~~~~~~Ida~~~~eeV~~~I~~~l~ 205 (212)
T PRK13974 169 ERVAEGFALIAEERNWKVISADQSIETISNEIKETLL 205 (212)
T ss_pred HHHHHHHHHHHhcCCEEEEeCCCCHHHHHHHHHHHHH
Confidence 9999999999988899999999999999999988774
No 25
>PF05191 ADK_lid: Adenylate kinase, active site lid; InterPro: IPR007862 Adenylate kinases (ADK; 2.7.4.3 from EC) are phosphotransferases that catalyse the Mg-dependent reversible conversion of ATP and AMP to two molecules of ADP, an essential reaction for many processes in living cells. In large variants of adenylate kinase, the AMP and ATP substrates are buried in a domain that undergoes conformational changes from an open to a closed state when bound to substrate; the ligand is then contained within a highly specific environment required for catalysis. Adenylate kinase is a 3-domain protein consisting of a large central CORE domain flanked by a LID domain on one side and the AMP-binding NMPbind domain on the other []. The LID domain binds ATP and covers the phosphates at the active site. The substrates first bind the CORE domain, followed by closure of the active site by the LID and NMPbind domains. Comparisons of adenylate kinases have revealed a particular divergence in the active site lid. In some organisms, particularly the Gram-positive bacteria, residues in the lid domain have been mutated to cysteines and these cysteine residues (two CX(n)C motifs) are responsible for the binding of a zinc ion. The bound zinc ion in the lid domain is clearly structurally homologous to Zinc-finger domains. However, it is unclear whether the adenylate kinase lid is a novel zinc-finger DNA/RNA binding domain, or that the lid bound zinc serves a purely structural function [].; GO: 0004017 adenylate kinase activity; PDB: 3BE4_A 2OSB_B 2ORI_A 2EU8_A 3DL0_A 1P3J_A 2QAJ_A 2OO7_A 2P3S_A 3DKV_A ....
Probab=99.15 E-value=5e-12 Score=70.57 Aligned_cols=36 Identities=58% Similarity=0.955 Sum_probs=32.3
Q ss_pred CCcCCCCCCccccCCCCCCCCCCCCCCCCCcccCCC
Q 030234 94 RWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKD 129 (181)
Q Consensus 94 r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~~r~d 129 (181)
|++|+.||++||..|+||+.+++||.||+.|++|.|
T Consensus 1 Rr~C~~Cg~~Yh~~~~pP~~~~~Cd~cg~~L~qR~D 36 (36)
T PF05191_consen 1 RRICPKCGRIYHIEFNPPKVEGVCDNCGGELVQRKD 36 (36)
T ss_dssp EEEETTTTEEEETTTB--SSTTBCTTTTEBEBEEGG
T ss_pred CcCcCCCCCccccccCCCCCCCccCCCCCeeEeCCC
Confidence 678999999999999999999999999999999975
No 26
>PRK13973 thymidylate kinase; Provisional
Probab=99.14 E-value=7.1e-10 Score=86.37 Aligned_cols=140 Identities=22% Similarity=0.233 Sum_probs=92.2
Q ss_pred CChHHHHHHHHHHCC--CCCCH------------HHHHHHHHHHHcCCCC--CCCeE-----ecCCCCCH--HHHHHHHH
Q 030234 9 KTPLGIKAKEAMDKG--ELVSD------------DLVVGIIDEAMKKPSC--QKGFI-----LDGFPRTE--VQAQKLDE 65 (181)
Q Consensus 9 ~t~lg~~i~~~l~~G--~~vpd------------~~v~~ll~~~l~~~~~--~~G~i-----LdGfPrt~--~Qa~~l~~ 65 (181)
+++.|+.+++.+..+ ..+.. +.+.++|...+.+... ..+|+ .+|+|++. .++..|+.
T Consensus 42 ~~~~g~~ir~~l~~~~~~~~~~~~~~ll~~a~r~~~~~~~i~~~l~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~ 121 (213)
T PRK13973 42 GSPGAEAIRHVLLSGAAELYGPRMEALLFAAARDDHVEEVIRPALARGKIVLCDRFIDSTRAYQGVTGNVDPALLAALER 121 (213)
T ss_pred CCchHHHHHHHHcCCCccCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEcchhhhHHHHcccccCCCHHHHHHHHH
Confidence 466788888887653 22322 2233444555544321 13344 77888754 36666654
Q ss_pred HHHhcCCCccEEEEeecChHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCCCcccCCC-CcHHHHHHHHHHHHH
Q 030234 66 MLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKD-DTAAVLKSRLEAFHK 144 (181)
Q Consensus 66 ~l~~~~~~p~~vi~L~~~~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~~r~d-d~~~~i~~Rl~~y~~ 144 (181)
.+. .+..||+||+|+||++++.+|+..|..+. + ..|.+ ++.+..+++...|.+
T Consensus 122 ~~~-~~~~PD~vi~Ldv~~e~~~~Rl~~R~~~~-~------------------------~~~~e~~~~~~~~~~~~~y~~ 175 (213)
T PRK13973 122 VAI-NGVMPDLTLILDIPAEVGLERAAKRRGSD-T------------------------PDRFEKEDLAFHEKRREAFLQ 175 (213)
T ss_pred HHh-CCCCCCEEEEEeCCHHHHHHHHHhccCCC-c------------------------cCchhhchHHHHHHHHHHHHH
Confidence 432 23689999999999999999999886311 0 01333 356777888888887
Q ss_pred hcHHHHHHHhhcCCEEEEeCCCChHHHHHHHHHHhc
Q 030234 145 QTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 180 (181)
Q Consensus 145 ~~~~l~~~y~~~~~l~~Ida~~~~~~v~~~i~~~l~ 180 (181)
.. ++|. +.++.|||++++++|+.+|.+.|.
T Consensus 176 l~----~~~~--~~~~~Ida~~~~e~V~~~I~~~i~ 205 (213)
T PRK13973 176 IA----AQEP--ERCVVIDATASPEAVAAEIWAAVD 205 (213)
T ss_pred HH----HhCC--CcEEEEcCCCCHHHHHHHHHHHHH
Confidence 44 3443 368999999999999999988764
No 27
>PRK08356 hypothetical protein; Provisional
Probab=99.00 E-value=8.3e-09 Score=79.20 Aligned_cols=68 Identities=18% Similarity=0.414 Sum_probs=56.5
Q ss_pred HHHHHCCCCCCH----HHHHHHHHHHHcCCCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCccEEEEeecChHHHHHHHh
Q 030234 17 KEAMDKGELVSD----DLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERIT 92 (181)
Q Consensus 17 ~~~l~~G~~vpd----~~v~~ll~~~l~~~~~~~G~iLdGfPrt~~Qa~~l~~~l~~~~~~p~~vi~L~~~~~~~~~Rl~ 92 (181)
.+++..|+++|+ +++++++.+++.. +. .|++||| |+..|++.|... ...+|++++|.+++.+|+.
T Consensus 65 ~~~~e~g~~~~~~yG~~~~~~~~~~~~~~--~~-~ividG~-r~~~q~~~l~~~-------~~~vi~l~~~~~~~~~Rl~ 133 (195)
T PRK08356 65 ENLIELGRYLKEKYGEDILIRLAVDKKRN--CK-NIAIDGV-RSRGEVEAIKRM-------GGKVIYVEAKPEIRFERLR 133 (195)
T ss_pred ccHHHHHHHHHHhcCcHHHHHHHHHHhcc--CC-eEEEcCc-CCHHHHHHHHhc-------CCEEEEEECCHHHHHHHHH
Confidence 688899999995 8888888888843 23 5999999 999999987631 2479999999999999999
Q ss_pred CCC
Q 030234 93 GRW 95 (181)
Q Consensus 93 ~r~ 95 (181)
+|.
T Consensus 134 ~R~ 136 (195)
T PRK08356 134 RRG 136 (195)
T ss_pred hcC
Confidence 885
No 28
>PRK01184 hypothetical protein; Provisional
Probab=98.72 E-value=1.3e-06 Score=66.11 Aligned_cols=126 Identities=18% Similarity=0.161 Sum_probs=83.9
Q ss_pred hHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCccEEEEeecChHHHHHH
Q 030234 11 PLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEER 90 (181)
Q Consensus 11 ~lg~~i~~~l~~G~~vpd~~v~~ll~~~l~~~~~~~G~iLdGfPrt~~Qa~~l~~~l~~~~~~p~~vi~L~~~~~~~~~R 90 (181)
.+|..+..... .+.++ .+..++...+... +...+|+||| |+..|++.+.+.+ + .+..+|++++|.++..+|
T Consensus 50 ~~g~~~~~~~~--~~~~~-~~~~~~~~~i~~~-~~~~vvidg~-r~~~e~~~~~~~~---~-~~~~~i~v~~~~~~~~~R 120 (184)
T PRK01184 50 NIGKVAIDLRK--ELGMD-AVAKRTVPKIREK-GDEVVVIDGV-RGDAEVEYFRKEF---P-EDFILIAIHAPPEVRFER 120 (184)
T ss_pred HHHHHHHHHHH--HHChH-HHHHHHHHHHHhc-CCCcEEEeCC-CCHHHHHHHHHhC---C-cccEEEEEECCHHHHHHH
Confidence 36777766554 33333 4555555666542 3478999999 8999998876543 1 356899999999999999
Q ss_pred HhCCCcCCCCCCccccCCCCCCCCCCCCCCCCCcccCCCC--cHHHHHHHHHHHHHhcHHHHHHHhhcCCEEEEeCCCCh
Q 030234 91 ITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDD--TAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPP 168 (181)
Q Consensus 91 l~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~~r~dd--~~~~i~~Rl~~y~~~~~~l~~~y~~~~~l~~Ida~~~~ 168 (181)
+..|. |++| +.+.+.+|...... .++.+.+.... +.||-+.+.
T Consensus 121 l~~R~-------------------------------~~~d~~~~~~~~~r~~~q~~--~~~~~~~~~ad--~vI~N~~~~ 165 (184)
T PRK01184 121 LKKRG-------------------------------RSDDPKSWEELEERDERELS--WGIGEVIALAD--YMIVNDSTL 165 (184)
T ss_pred HHHcC-------------------------------CCCChhhHHHHHHHHHHHhc--cCHHHHHHhcC--EEEeCCCCH
Confidence 99874 2222 36677777765432 22444543322 455667789
Q ss_pred HHHHHHHHHHhc
Q 030234 169 QEVTSEVQKALS 180 (181)
Q Consensus 169 ~~v~~~i~~~l~ 180 (181)
++++.++.+.++
T Consensus 166 ~~l~~~v~~~~~ 177 (184)
T PRK01184 166 EEFRARVRKLLE 177 (184)
T ss_pred HHHHHHHHHHHH
Confidence 999999988764
No 29
>PRK13975 thymidylate kinase; Provisional
Probab=98.66 E-value=7.6e-07 Score=67.95 Aligned_cols=138 Identities=14% Similarity=0.165 Sum_probs=85.1
Q ss_pred CChHHHHHHHHHHCCCCCCHHHHHHHH-HHHHcC------CCCCCCeEecCCCCCH--HHH------HHHHHHHHhcCCC
Q 030234 9 KTPLGIKAKEAMDKGELVSDDLVVGII-DEAMKK------PSCQKGFILDGFPRTE--VQA------QKLDEMLEKQGKK 73 (181)
Q Consensus 9 ~t~lg~~i~~~l~~G~~vpd~~v~~ll-~~~l~~------~~~~~G~iLdGfPrt~--~Qa------~~l~~~l~~~~~~ 73 (181)
++.+|+.+++++..+. +++..+.-++ .++... .-...++|+|+|+.+. -|. ..+. .+......
T Consensus 36 ~~~~g~~ir~~~~~~~-~~~~~~~~~f~~~r~~~~~~i~~~~~~~~vi~DRy~~S~~a~~~~~g~~~~~~~-~~~~~~~~ 113 (196)
T PRK13975 36 DGKIGKLIREILSGSK-CDKETLALLFAADRVEHVKEIEEDLKKRDVVCDRYVYSSIAYQSVQGIDEDFIY-SINRYAKK 113 (196)
T ss_pred CChHHHHHHHHHccCC-CCHHHHHHHHHHHHHHHHHHHHHHHcCCEEEEECchhHHHHHhcccCCCHHHHH-HHHhCCCC
Confidence 4678999999887763 4443333222 233211 1123679999998642 111 1111 12222357
Q ss_pred ccEEEEeecChHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHHhcHHHHHHH
Q 030234 74 VDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYY 153 (181)
Q Consensus 74 p~~vi~L~~~~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~~r~dd~~~~i~~Rl~~y~~~~~~l~~~y 153 (181)
|+++|+|++|.+++.+|+..|.. + ..++.+...+....|.+... ..+|
T Consensus 114 pd~vi~L~~~~e~~~~Rl~~r~~-~-----------------------------~~~~~~~~~~~~~~y~~~~~--~~~~ 161 (196)
T PRK13975 114 PDLVFLLDVDIEEALKRMETRDK-E-----------------------------IFEKKEFLKKVQEKYLELAN--NEKF 161 (196)
T ss_pred CCEEEEEcCCHHHHHHHHhccCc-c-----------------------------ccchHHHHHHHHHHHHHHHh--hccc
Confidence 99999999999999999998741 0 11234455556666666554 3333
Q ss_pred hhcCCEEEEeCC-CChHHHHHHHHHHhc
Q 030234 154 SKKGIVAQLHAE-KPPQEVTSEVQKALS 180 (181)
Q Consensus 154 ~~~~~l~~Ida~-~~~~~v~~~i~~~l~ 180 (181)
.....++.||++ .++++++++|.+.|.
T Consensus 162 ~~~~~~~~Id~~~~~~eev~~~I~~~i~ 189 (196)
T PRK13975 162 MPKYGFIVIDTTNKSIEEVFNEILNKIK 189 (196)
T ss_pred CCcCCEEEEECCCCCHHHHHHHHHHHHH
Confidence 333458999996 899999999988774
No 30
>PRK08233 hypothetical protein; Provisional
Probab=98.65 E-value=2.6e-07 Score=69.49 Aligned_cols=125 Identities=14% Similarity=0.175 Sum_probs=79.6
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHcCCC--CCCCeEecCCCCCHHHHHHHHHHHHhcCCCccEEEEeecChHHHHHHHhC
Q 030234 16 AKEAMDKGELVSDDLVVGIIDEAMKKPS--CQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITG 93 (181)
Q Consensus 16 i~~~l~~G~~vpd~~v~~ll~~~l~~~~--~~~G~iLdGfPrt~~Qa~~l~~~l~~~~~~p~~vi~L~~~~~~~~~Rl~~ 93 (181)
+..++..|..+ +....+.+.+.+.... ...+||+.+||......+.- ..+|.+|+|++|.+++++|+..
T Consensus 47 ~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~vivd~~~~~~~~~~~--------~~~d~~i~l~~~~~~~~~R~~~ 117 (182)
T PRK08233 47 ICKWIDKGANY-SEWVLTPLIKDIQELIAKSNVDYIIVDYPFAYLNSEMR--------QFIDVTIFIDTPLDIAMARRIL 117 (182)
T ss_pred hhhhhhccCCh-hhhhhHHHHHHHHHHHcCCCceEEEEeeehhhccHHHH--------HHcCEEEEEcCCHHHHHHHHHH
Confidence 34445555554 4455555555554322 22377887788864443321 2479999999999999999887
Q ss_pred CCcCCCCCCccccCCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHHhcHHHHHH-Hhh--cCCEEEEeCCCChHH
Q 030234 94 RWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDY-YSK--KGIVAQLHAEKPPQE 170 (181)
Q Consensus 94 r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~~r~dd~~~~i~~Rl~~y~~~~~~l~~~-y~~--~~~l~~Ida~~~~~~ 170 (181)
|.. .+++.+.+.+++..|.....+.-.- +.. ....+.||++.++++
T Consensus 118 R~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~vId~~~~~e~ 166 (182)
T PRK08233 118 RDF-------------------------------KEDTGNEIHNDLKHYLNYARPLYLEALHTVKPNADIVLDGALSVEE 166 (182)
T ss_pred HHh-------------------------------hhccccchhhHHHHHHHHHHHHHHHHhhcCccCCeEEEcCCCCHHH
Confidence 742 0112234667788887766655211 111 234677999999999
Q ss_pred HHHHHHHHhc
Q 030234 171 VTSEVQKALS 180 (181)
Q Consensus 171 v~~~i~~~l~ 180 (181)
++++|.+.|.
T Consensus 167 i~~~i~~~l~ 176 (182)
T PRK08233 167 IINQIEEELY 176 (182)
T ss_pred HHHHHHHHHH
Confidence 9999999875
No 31
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=98.53 E-value=6e-07 Score=73.04 Aligned_cols=94 Identities=14% Similarity=0.134 Sum_probs=74.1
Q ss_pred CCCeEecCCCCCHHHHHHHHHHHHhcCCCccEEEEeecChHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCCCc
Q 030234 45 QKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPL 124 (181)
Q Consensus 45 ~~G~iLdGfPrt~~Qa~~l~~~l~~~~~~p~~vi~L~~~~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l 124 (181)
..++|+|++|.+..|.+.+..+....+..+. +|+|++|.+++.+|+.+|..
T Consensus 75 g~~vIid~~~~~~~~~~~~~~la~~~~~~~~-~v~l~~~~e~~~~R~~~R~~---------------------------- 125 (300)
T PHA02530 75 GKSVIISDTNLNPERRRKWKELAKELGAEFE-EKVFDVPVEELVKRNRKRGE---------------------------- 125 (300)
T ss_pred CCeEEEeCCCCCHHHHHHHHHHHHHcCCeEE-EEEeCCCHHHHHHHHHccCc----------------------------
Confidence 3679999999999999988876666655543 68999999999999999842
Q ss_pred ccCCCCcHHHHH---HHHHHHHHhcHHHHHHHhhcCCEEEEeCCCChHH
Q 030234 125 IQRKDDTAAVLK---SRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQE 170 (181)
Q Consensus 125 ~~r~dd~~~~i~---~Rl~~y~~~~~~l~~~y~~~~~l~~Ida~~~~~~ 170 (181)
.....+.++ +|++.|...+.|+...|.....++.+|.++++.+
T Consensus 126 ---~~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~D~dgtl~~ 171 (300)
T PHA02530 126 ---RAVPEDVLRSMFKQMKEYRGLVWPVYTADPGLPKAVIFDIDGTLAK 171 (300)
T ss_pred ---CCCCHHHHHHHHHHHHHhcCCCCceeccCCCCCCEEEEECCCcCcC
Confidence 122345555 9999999999999888866567888888887664
No 32
>PRK03839 putative kinase; Provisional
Probab=98.51 E-value=2.4e-06 Score=64.55 Aligned_cols=100 Identities=19% Similarity=0.264 Sum_probs=66.1
Q ss_pred HHHHHHHHcCCCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCccEEEEeecChHHHHHHHhCCCcCCCCCCccccCCCCC
Q 030234 32 VGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPP 111 (181)
Q Consensus 32 ~~ll~~~l~~~~~~~G~iLdGfPrt~~Qa~~l~~~l~~~~~~p~~vi~L~~~~~~~~~Rl~~r~~~~~tg~~y~~~~~pp 111 (181)
...+...+.+.....+||+||++... ..++.+|+|+++.+++.+|+..|...
T Consensus 52 ~~~l~~~~~~~~~~~~vIidG~~~~l--------------~~~~~vi~L~~~~~~~~~Rl~~R~~~-------------- 103 (180)
T PRK03839 52 FDKLAYFIEEEFKEKNVVLDGHLSHL--------------LPVDYVIVLRAHPKIIKERLKERGYS-------------- 103 (180)
T ss_pred HHHHHHHHHHhccCCCEEEEeccccc--------------cCCCEEEEEECCHHHHHHHHHHcCCC--------------
Confidence 44555555433234679999986421 35899999999999999999877421
Q ss_pred CCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCCEEEEeCC-CChHHHHHHHHHHhc
Q 030234 112 KVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAE-KPPQEVTSEVQKALS 180 (181)
Q Consensus 112 ~~~~~~~~~~~~l~~r~dd~~~~i~~Rl~~y~~~~~~l~~~y~~~~~l~~Ida~-~~~~~v~~~i~~~l~ 180 (181)
|.+ ..+.+..++. ..++.++|..+..++.||++ .++++|+.+|.+.|.
T Consensus 104 ---------------~~~-~~~~~~~~~~-----~~~~~~~~~~r~~~~~Id~~~~s~eev~~~I~~~l~ 152 (180)
T PRK03839 104 ---------------KKK-ILENVEAELV-----DVCLCEALEEKEKVIEVDTTGKTPEEVVEEILELIK 152 (180)
T ss_pred ---------------HHH-HHHHHHHHHH-----HHHHHHHHHhcCCEEEEECCCCCHHHHHHHHHHHHh
Confidence 100 0111111111 12345777767789999997 699999999998875
No 33
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=98.39 E-value=2.7e-05 Score=60.52 Aligned_cols=140 Identities=21% Similarity=0.273 Sum_probs=82.6
Q ss_pred cCChHHHHHHHHHHCC-CCCCHHHHHHHH-HHHHcC------CCCCC--CeEecCCCCCHH--HH-------HHHHHHHH
Q 030234 8 AKTPLGIKAKEAMDKG-ELVSDDLVVGII-DEAMKK------PSCQK--GFILDGFPRTEV--QA-------QKLDEMLE 68 (181)
Q Consensus 8 ~~t~lg~~i~~~l~~G-~~vpd~~v~~ll-~~~l~~------~~~~~--G~iLdGfPrt~~--Qa-------~~l~~~l~ 68 (181)
.+|++|+.|++++.+| ..+.+....-|. .+|..+ +.... -+|.|.|=.+.- |+ ..+. .+.
T Consensus 41 ~~~~ige~iR~~ll~~~~~~~~~~e~lLfaadR~~h~~~~i~pal~~g~vVI~DRy~~Ss~AYQg~~~~~~~~~~~-~l~ 119 (208)
T COG0125 41 GGTPIGEKIRELLLNGEEKLSPKAEALLFAADRAQHLEEVIKPALKEGKVVICDRYVDSSLAYQGGGRGLDLDWVL-ALN 119 (208)
T ss_pred CCChHHHHHHHHHcCCccCCCHHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEECCcccHHHHhhhhccCCCHHHHH-HHH
Confidence 3599999999999987 444444433333 233322 11233 478898876533 42 1111 111
Q ss_pred hc---CCCccEEEEeecChHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHHh
Q 030234 69 KQ---GKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQ 145 (181)
Q Consensus 69 ~~---~~~p~~vi~L~~~~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~~r~dd~~~~i~~Rl~~y~~~ 145 (181)
+. +..||++++|++|.++..+|+.+|.... .|.+.....+.+|.. +.
T Consensus 120 ~~~~~~~~PD~ti~Ldv~~e~al~R~~~r~~~~---------------------------~r~E~~~~~f~~kvr---~~ 169 (208)
T COG0125 120 EFAPGGLKPDLTLYLDVPPEVALERIRKRGELR---------------------------DRFEKEDDEFLEKVR---EG 169 (208)
T ss_pred HhccCCCCCCEEEEEeCCHHHHHHHHHhcCCcc---------------------------chhhhHHHHHHHHHH---HH
Confidence 22 4589999999999999999999986310 011111111222221 11
Q ss_pred cHHHHHHHhhcCCEEEEeCCCChHHHHHHHHHHhc
Q 030234 146 TEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 180 (181)
Q Consensus 146 ~~~l~~~y~~~~~l~~Ida~~~~~~v~~~i~~~l~ 180 (181)
...+.+.+. ..+..|||+.++++|..+|.+.|.
T Consensus 170 Y~~la~~~~--~r~~vIda~~~~e~v~~~i~~~l~ 202 (208)
T COG0125 170 YLELAAKFP--ERIIVIDASRPLEEVHEEILKILK 202 (208)
T ss_pred HHHHHhhCC--CeEEEEECCCCHHHHHHHHHHHHH
Confidence 122222232 258999999999999999988774
No 34
>PRK06217 hypothetical protein; Validated
Probab=98.38 E-value=1.8e-05 Score=60.07 Aligned_cols=126 Identities=15% Similarity=0.188 Sum_probs=78.0
Q ss_pred CCCHHHHHHHHHHHHcCCCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCccEEEEeecChHHHHHHHhCCCcCCCCCCcc
Q 030234 25 LVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTY 104 (181)
Q Consensus 25 ~vpd~~v~~ll~~~l~~~~~~~G~iLdGfPrt~~Qa~~l~~~l~~~~~~p~~vi~L~~~~~~~~~Rl~~r~~~~~tg~~y 104 (181)
..|++....++.+.+.. ..+|||||+|..... .+ . ..+|.+|+|++|.++++.|+.+|.... .|+
T Consensus 47 ~~~~~~~~~~~~~~~~~---~~~~vi~G~~~~~~~--~~---~----~~~d~~i~Ld~~~~~~~~Rl~~R~~~~-~~~-- 111 (183)
T PRK06217 47 KRPPEERLRLLLEDLRP---REGWVLSGSALGWGD--PL---E----PLFDLVVFLTIPPELRLERLRLREFQR-YGN-- 111 (183)
T ss_pred cCCHHHHHHHHHHHHhc---CCCEEEEccHHHHHH--HH---H----hhCCEEEEEECCHHHHHHHHHcCcccc-cCc--
Confidence 35666666666666643 358999999975321 11 1 248899999999999999999986532 121
Q ss_pred ccCCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHH------hcHHHHHHHhhc-CCEEEEeCCCChHHHHHHHHH
Q 030234 105 HTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHK------QTEPVIDYYSKK-GIVAQLHAEKPPQEVTSEVQK 177 (181)
Q Consensus 105 ~~~~~pp~~~~~~~~~~~~l~~r~dd~~~~i~~Rl~~y~~------~~~~l~~~y~~~-~~l~~Ida~~~~~~v~~~i~~ 177 (181)
|...+. ..+.....+.++...|.. .......++... ..++.+++..+++++.++|.+
T Consensus 112 ------~~~~~~----------~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~i~~ 175 (183)
T PRK06217 112 ------RILPGG----------DMHKASLEFLEWAASYDTAGPEGRSLAAHEQWLADQSCPVLRLDGDLTVEDLLDEVLD 175 (183)
T ss_pred ------ccCCCC----------CHHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHH
Confidence 000000 001112235555555543 222333344433 568899999999999999999
Q ss_pred HhcC
Q 030234 178 ALSA 181 (181)
Q Consensus 178 ~l~~ 181 (181)
.|++
T Consensus 176 ~~~~ 179 (183)
T PRK06217 176 HLAS 179 (183)
T ss_pred HHhc
Confidence 8863
No 35
>PRK00698 tmk thymidylate kinase; Validated
Probab=98.35 E-value=4.4e-05 Score=58.41 Aligned_cols=137 Identities=18% Similarity=0.184 Sum_probs=79.5
Q ss_pred CChHHHHHHHHHHC--CCCCCHHHHHHHHHHHHcCC--------CCCCCeEecCCCCCHH------------HHHHHHHH
Q 030234 9 KTPLGIKAKEAMDK--GELVSDDLVVGIIDEAMKKP--------SCQKGFILDGFPRTEV------------QAQKLDEM 66 (181)
Q Consensus 9 ~t~lg~~i~~~l~~--G~~vpd~~v~~ll~~~l~~~--------~~~~G~iLdGfPrt~~------------Qa~~l~~~ 66 (181)
++..|..++..+.. +...|.....-.+..+.... .....+|+|.|+-+.- ....+...
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~i~~~l~~g~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~ 121 (205)
T PRK00698 42 GTPLGEKLRELLLDPNEEMDDKTELLLFYAARAQHLEEVIKPALARGKWVISDRFIDSSLAYQGGGRGLDIDLLLALNDF 121 (205)
T ss_pred CChHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCchhHHHHHCCCCCCCCHHHHHHHHHH
Confidence 46789999998873 44444333222222222111 1124689997776531 11222222
Q ss_pred HHhcCCCccEEEEeecChHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHH-HHHh
Q 030234 67 LEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEA-FHKQ 145 (181)
Q Consensus 67 l~~~~~~p~~vi~L~~~~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~~r~dd~~~~i~~Rl~~-y~~~ 145 (181)
+. ....||++|+|++|.+++.+|+..|... .+.+...-.+.+|+.. |...
T Consensus 122 ~~-~~~~pd~~i~l~~~~~~~~~Rl~~R~~~----------------------------~~~~~~~~~~~~~~~~~y~~~ 172 (205)
T PRK00698 122 AL-GGFRPDLTLYLDVPPEVGLARIRARGEL----------------------------DRIEQEGLDFFERVREGYLEL 172 (205)
T ss_pred Hh-CCCCCCEEEEEeCCHHHHHHHHHhcCCc----------------------------chhhhhhHHHHHHHHHHHHHH
Confidence 21 1257999999999999999999988520 0111112233444443 3322
Q ss_pred cHHHHHHHhhcCCEEEEeCCCChHHHHHHHHHHhc
Q 030234 146 TEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 180 (181)
Q Consensus 146 ~~~l~~~y~~~~~l~~Ida~~~~~~v~~~i~~~l~ 180 (181)
.+.+ ...++.||+++++++|.++|.+.|.
T Consensus 173 ----~~~~--~~~~~~Id~~~~~e~v~~~i~~~i~ 201 (205)
T PRK00698 173 ----AEKE--PERIVVIDASQSLEEVHEDILAVIK 201 (205)
T ss_pred ----HHhC--CCeEEEEeCCCCHHHHHHHHHHHHH
Confidence 2222 2368899999999999999988764
No 36
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=98.30 E-value=3.5e-05 Score=58.62 Aligned_cols=69 Identities=22% Similarity=0.298 Sum_probs=43.3
Q ss_pred CccEEEEeecChHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHHhcHHHHHH
Q 030234 73 KVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDY 152 (181)
Q Consensus 73 ~p~~vi~L~~~~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~~r~dd~~~~i~~Rl~~y~~~~~~l~~~ 152 (181)
.|+++|+|++|.+.+++|+..|.. . + .+.. .....++.....-.++
T Consensus 127 ~~d~~i~l~~~~~~~~~R~~~r~~-------------------------------~-~-~~~~-~~~~~~~~~~~~y~~~ 172 (195)
T TIGR00041 127 MPDLTIYLDIDPEVALERLRKRGE-------------------------------L-D-REEF-EKLDFFEKVRQRYLEL 172 (195)
T ss_pred CCCEEEEEeCCHHHHHHHHHhcCC-------------------------------c-c-hHHH-HHHHHHHHHHHHHHHH
Confidence 499999999999999999998742 0 0 0000 0111122222222233
Q ss_pred HhhcCCEEEEeCCCChHHHHHHH
Q 030234 153 YSKKGIVAQLHAEKPPQEVTSEV 175 (181)
Q Consensus 153 y~~~~~l~~Ida~~~~~~v~~~i 175 (181)
+.+...++.|||++++++|..+|
T Consensus 173 ~~~~~~~~~id~~~~~e~v~~~i 195 (195)
T TIGR00041 173 ADKEKSIHVIDATNSVEEVEQDI 195 (195)
T ss_pred HcCCCcEEEEeCCCCHHHHHhhC
Confidence 33234689999999999998764
No 37
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=98.19 E-value=0.0002 Score=54.18 Aligned_cols=139 Identities=21% Similarity=0.240 Sum_probs=77.5
Q ss_pred CChHHHHHHHHHHCCC---CCCHHHHHHH-------HHHHHcC-CCCCCCeEecCCCCCH------------HHHHHHHH
Q 030234 9 KTPLGIKAKEAMDKGE---LVSDDLVVGI-------IDEAMKK-PSCQKGFILDGFPRTE------------VQAQKLDE 65 (181)
Q Consensus 9 ~t~lg~~i~~~l~~G~---~vpd~~v~~l-------l~~~l~~-~~~~~G~iLdGfPrt~------------~Qa~~l~~ 65 (181)
.+..|..++.++..+. .-|.....-. +.+.+.. ......+|+|.|+.+. .....+..
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~ 118 (200)
T cd01672 39 GTPIGEAIRELLLDPEDEKMDPRAELLLFAADRAQHVEEVIKPALARGKIVLSDRFVDSSLAYQGAGRGLGEALIEALND 118 (200)
T ss_pred CCchHHHHHHHHhccCccCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEECCCcchHHHhCccccCCCHHHHHHHHH
Confidence 4457888888877653 2222221111 1111111 1123568999777532 23333332
Q ss_pred HHHhcCCCccEEEEeecChHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHHh
Q 030234 66 MLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQ 145 (181)
Q Consensus 66 ~l~~~~~~p~~vi~L~~~~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~~r~dd~~~~i~~Rl~~y~~~ 145 (181)
.. .....|+.+|+|++|.+++.+|+..|.-.. ........+.+++..+..
T Consensus 119 ~~-~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~----------------------------~~~~~~~~~~~~~~~~y~- 168 (200)
T cd01672 119 LA-TGGLKPDLTILLDIDPEVGLARIEARGRDD----------------------------RDEQEGLEFHERVREGYL- 168 (200)
T ss_pred HH-hCCCCCCEEEEEeCCHHHHHHHHHhcCCcc----------------------------hhhhhhHHHHHHHHHHHH-
Confidence 22 223579999999999999999999885210 000111223333322211
Q ss_pred cHHHHHHHhhcCCEEEEeCCCChHHHHHHHHHHhcC
Q 030234 146 TEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALSA 181 (181)
Q Consensus 146 ~~~l~~~y~~~~~l~~Ida~~~~~~v~~~i~~~l~~ 181 (181)
++...+ ...++.||++.++++++++|...|.+
T Consensus 169 --~~~~~~--~~~~~~id~~~~~e~i~~~i~~~i~~ 200 (200)
T cd01672 169 --ELAAQE--PERIIVIDASQPLEEVLAEILKAILE 200 (200)
T ss_pred --HHHHhC--CCeEEEEeCCCCHHHHHHHHHHHHhC
Confidence 122222 13589999999999999999998753
No 38
>PRK07933 thymidylate kinase; Validated
Probab=98.19 E-value=6.8e-05 Score=58.45 Aligned_cols=145 Identities=13% Similarity=0.138 Sum_probs=79.4
Q ss_pred CChHHHHHHHHHHCC--CCCCHHHHHHHH--HHHHcCC-------CCCCCeEecCCCCCH--HHHH--------HHHHHH
Q 030234 9 KTPLGIKAKEAMDKG--ELVSDDLVVGII--DEAMKKP-------SCQKGFILDGFPRTE--VQAQ--------KLDEML 67 (181)
Q Consensus 9 ~t~lg~~i~~~l~~G--~~vpd~~v~~ll--~~~l~~~-------~~~~G~iLdGfPrt~--~Qa~--------~l~~~l 67 (181)
++++|..+++++... ....+.....++ .+|.... ....-+|.|+|..+. -|+- ....++
T Consensus 41 ~~~~g~~ir~~l~~~~~~~~~~~~~~~llf~a~R~~~~~~I~p~l~~g~~VI~DRy~~S~~Ayq~~~~~~~~~~~~~~~~ 120 (213)
T PRK07933 41 RSVHADLAAEALHGRHGDLADSVYAMATLFALDRAGARDELAGLLAAHDVVILDRYVASNAAYSAARLHQDADGEAVAWV 120 (213)
T ss_pred CCCccHHHHHHHcCCCCcccCCHHHHHHHHhhhhhhhHHHHHHHHhCCCEEEECCccchhHHHhccCCCcccchHHHHHH
Confidence 477899999988742 332233333333 2222211 112347999998764 2331 111122
Q ss_pred ---Hh--cC-CCccEEEEeecChHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHH
Q 030234 68 ---EK--QG-KKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEA 141 (181)
Q Consensus 68 ---~~--~~-~~p~~vi~L~~~~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~~r~dd~~~~i~~Rl~~ 141 (181)
.. .+ ..||++|+|++|.+++.+|+.+|... ..+. . ..|.+...+..++--+.
T Consensus 121 ~~~~~~~~~~~~PDl~i~Ldv~~e~a~~Ri~~R~~~-~~~~--------------------~-~d~~E~~~~f~~~v~~~ 178 (213)
T PRK07933 121 AELEFGRLGLPVPDLQVLLDVPVELAAERARRRAAQ-DADR--------------------A-RDAYERDDGLQQRTGAV 178 (213)
T ss_pred HHHHHhhcCCCCCCEEEEecCCHHHHHHHHHhhccc-cCCc--------------------c-cccccccHHHHHHHHHH
Confidence 11 12 36999999999999999999987421 0000 0 00111112222222233
Q ss_pred HHHhcHHHHHHHhhcCCEEEEeCCCChHHHHHHHHHHhc
Q 030234 142 FHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 180 (181)
Q Consensus 142 y~~~~~~l~~~y~~~~~l~~Ida~~~~~~v~~~i~~~l~ 180 (181)
|.+.... ++ ...++.|||++++++|.++|.+.|-
T Consensus 179 Y~~~~~~---~~--~~~~~~ida~~~~e~v~~~i~~~~~ 212 (213)
T PRK07933 179 YAELAAQ---GW--GGPWLVVDPDVDPAALAARLAAALL 212 (213)
T ss_pred HHHHHHh---cC--CCCeEEeCCCCCHHHHHHHHHHHhc
Confidence 4333211 11 2368899999999999999998764
No 39
>PLN02924 thymidylate kinase
Probab=98.11 E-value=0.00014 Score=56.97 Aligned_cols=131 Identities=15% Similarity=0.177 Sum_probs=77.8
Q ss_pred cCChHHHHHHHHHHCCCCCCHHHHHHHH-HHHHcCC-------CCCCCeEecCCCCCHH--HH------HHHHHHHHhcC
Q 030234 8 AKTPLGIKAKEAMDKGELVSDDLVVGII-DEAMKKP-------SCQKGFILDGFPRTEV--QA------QKLDEMLEKQG 71 (181)
Q Consensus 8 ~~t~lg~~i~~~l~~G~~vpd~~v~~ll-~~~l~~~-------~~~~G~iLdGfPrt~~--Qa------~~l~~~l~~~~ 71 (181)
.+|++|+.+++++..+..+++....-+. .+|.... .....+|.|.|.-+.- |+ +.+. .+....
T Consensus 55 ~~~~~g~~ir~~l~~~~~~~~~~~~llf~adR~~~~~~I~pal~~g~vVI~DRy~~S~~ayq~~~g~~~~~~~-~~~~~~ 133 (220)
T PLN02924 55 RTTSVGQMISAYLSNKSQLDDRAIHLLFSANRWEKRSLMERKLKSGTTLVVDRYSYSGVAFSAAKGLDLEWCK-APEVGL 133 (220)
T ss_pred CCChHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEccchhHHHHHHHhcCCCHHHHH-HHHhCC
Confidence 4689999999999887666554332111 2232221 1234689999987421 22 1121 122233
Q ss_pred CCccEEEEeecChHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHH-HHHhcHHHH
Q 030234 72 KKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEA-FHKQTEPVI 150 (181)
Q Consensus 72 ~~p~~vi~L~~~~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~~r~dd~~~~i~~Rl~~-y~~~~~~l~ 150 (181)
..||++|+|++|.+++.+|...+ +. |.+ +. .+.+|+.. |.+..
T Consensus 134 ~~PDlvi~Ld~~~~~a~~R~~~~------~~------------------------~~E-~~-~~~~rv~~~Y~~la---- 177 (220)
T PLN02924 134 PAPDLVLYLDISPEEAAERGGYG------GE------------------------RYE-KL-EFQKKVAKRFQTLR---- 177 (220)
T ss_pred CCCCEEEEEeCCHHHHHHHhccC------cc------------------------ccc-cH-HHHHHHHHHHHHHh----
Confidence 57999999999999999985311 10 111 11 22223322 22221
Q ss_pred HHHhhcCCEEEEeCCCChHHHHHHHHHHhc
Q 030234 151 DYYSKKGIVAQLHAEKPPQEVTSEVQKALS 180 (181)
Q Consensus 151 ~~y~~~~~l~~Ida~~~~~~v~~~i~~~l~ 180 (181)
+ ..++.|||+.++++|+++|.+.|.
T Consensus 178 ----~-~~~~vIDa~~sieeV~~~I~~~I~ 202 (220)
T PLN02924 178 ----D-SSWKIIDASQSIEEVEKKIREVVL 202 (220)
T ss_pred ----h-cCEEEECCCCCHHHHHHHHHHHHH
Confidence 1 257889999999999999988764
No 40
>KOG3327 consensus Thymidylate kinase/adenylate kinase [Nucleotide transport and metabolism]
Probab=97.99 E-value=0.00032 Score=53.21 Aligned_cols=132 Identities=20% Similarity=0.224 Sum_probs=81.7
Q ss_pred cCChHHHHHHHHHHCCCCCCHHHHHH-----------HHHHHHcCCCCCCCeEecCCCCC-HH--HHHHHH-HHHHh--c
Q 030234 8 AKTPLGIKAKEAMDKGELVSDDLVVG-----------IIDEAMKKPSCQKGFILDGFPRT-EV--QAQKLD-EMLEK--Q 70 (181)
Q Consensus 8 ~~t~lg~~i~~~l~~G~~vpd~~v~~-----------ll~~~l~~~~~~~G~iLdGfPrt-~~--Qa~~l~-~~l~~--~ 70 (181)
..|.+|+.|..|+.+-.-+||+++-- +|++.+.+. ...|+|-|-.+ ++ -|+-|. ++-.. .
T Consensus 44 Rst~iGk~i~~YL~k~~dl~d~~iHLlFSAnRwe~~~~i~e~l~kg---~~~ivDRY~~SGvAyS~AKgl~~dWc~~pd~ 120 (208)
T KOG3327|consen 44 RSTSIGKLIDGYLRKKSDLPDHTIHLLFSANRWEHVSLIKEKLAKG---TTLIVDRYSFSGVAYSAAKGLDLDWCKQPDV 120 (208)
T ss_pred hcccccHHHHHHHHhccCCcHHHHHHHhccchhhHHHHHHHHHhcC---CeEEEecceecchhhhhhcCCCcchhhCCcc
Confidence 35789999999999999999998643 444444332 34788888663 22 333221 00000 1
Q ss_pred C-CCccEEEEeecChHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHHhcHHH
Q 030234 71 G-KKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPV 149 (181)
Q Consensus 71 ~-~~p~~vi~L~~~~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~~r~dd~~~~i~~Rl~~y~~~~~~l 149 (181)
| .+||+|++|+++.+. ..|..+++. + | .....++.+...+.+...
T Consensus 121 gL~KPDlvlfL~v~p~~-~a~rggfG~-----E------------------------r--ye~v~fqekv~~~~q~l~-- 166 (208)
T KOG3327|consen 121 GLPKPDLVLFLDVSPED-AARRGGFGE-----E------------------------R--YETVAFQEKVLVFFQKLL-- 166 (208)
T ss_pred CCCCCCeEEEEeCCHHH-HHHhcCcch-----h------------------------H--HHHHHHHHHHHHHHHHHH--
Confidence 1 589999999999998 555566541 0 1 012234444333322222
Q ss_pred HHHHhhc-CCEEEEeCCCChHHHHHHHHHHhc
Q 030234 150 IDYYSKK-GIVAQLHAEKPPQEVTSEVQKALS 180 (181)
Q Consensus 150 ~~~y~~~-~~l~~Ida~~~~~~v~~~i~~~l~ 180 (181)
+.. -.++.|||+.+.++|.++|..+++
T Consensus 167 ----r~e~~~~~~vDAs~sve~V~~~V~~i~e 194 (208)
T KOG3327|consen 167 ----RKEDLNWHVVDASKSVEKVHQQVRSLVE 194 (208)
T ss_pred ----hccCCCeEEEecCccHHHHHHHHHHHHH
Confidence 212 368999999999999999976543
No 41
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=97.82 E-value=0.00014 Score=55.13 Aligned_cols=132 Identities=14% Similarity=0.098 Sum_probs=71.8
Q ss_pred cCChHHHHHHHHHHCCCCCCHHHHHHHH-HHHHcC---C-----CCCCCeEecCCCCCH------------HHHHHHHHH
Q 030234 8 AKTPLGIKAKEAMDKGELVSDDLVVGII-DEAMKK---P-----SCQKGFILDGFPRTE------------VQAQKLDEM 66 (181)
Q Consensus 8 ~~t~lg~~i~~~l~~G~~vpd~~v~~ll-~~~l~~---~-----~~~~G~iLdGfPrt~------------~Qa~~l~~~ 66 (181)
.++++|..+++++..+...+.....-+. ..+... . ....-+|.|.|--+. .....+...
T Consensus 34 ~~~~~g~~ir~~l~~~~~~~~~~~~~l~~a~r~~~~~~~I~~~l~~g~~VI~DRy~~S~lay~~~~~~~~~~~~~~~~~~ 113 (186)
T PF02223_consen 34 GSTPIGELIRELLRSESELSPEAEALLFAADRAWHLARVIRPALKRGKIVICDRYIYSTLAYQGAKGELDIDWIWRLNKD 113 (186)
T ss_dssp TSSHHHHHHHHHHHTSSTCGHHHHHHHHHHHHHHHHHHTHHHHHHTTSEEEEESEHHHHHHHHTTTTSSTHHHHHHHHHH
T ss_pred CCChHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEechhHHHHHhCccccCCcchhhhHHHHH
Confidence 4689999999999955544443332222 222111 1 012346777763321 111112111
Q ss_pred HHhcCCCccEEEEeecChHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHHhc
Q 030234 67 LEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQT 146 (181)
Q Consensus 67 l~~~~~~p~~vi~L~~~~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~~r~dd~~~~i~~Rl~~y~~~~ 146 (181)
+. ...||++|+|+++.++..+|+..|.. . .+.+....... ..+++..
T Consensus 114 ~~--~~~PDl~~~Ldv~pe~~~~R~~~r~~----~------------------------~~~~~~~~~~~---~~~~~~y 160 (186)
T PF02223_consen 114 IF--LPKPDLTFFLDVDPEEALKRIAKRGE----K------------------------DDEEEEDLEYL---RRVREAY 160 (186)
T ss_dssp HH--TTE-SEEEEEECCHHHHHHHHHHTSS----T------------------------TTTTTHHHHHH---HHHHHHH
T ss_pred hc--CCCCCEEEEEecCHHHHHHHHHcCCc----c------------------------chHHHHHHHHH---HHHHHHH
Confidence 11 12899999999999999999998862 0 01111111122 2222222
Q ss_pred HHHHHHHhhcCCEEEEeCCCChHHHHHHH
Q 030234 147 EPVIDYYSKKGIVAQLHAEKPPQEVTSEV 175 (181)
Q Consensus 147 ~~l~~~y~~~~~l~~Ida~~~~~~v~~~i 175 (181)
..+.+ ..+.++.|||+.++++|.++|
T Consensus 161 ~~l~~---~~~~~~iid~~~~~e~v~~~I 186 (186)
T PF02223_consen 161 LELAK---DPNNWVIIDASRSIEEVHEQI 186 (186)
T ss_dssp HHHHH---TTTTEEEEETTS-HHHHHHHH
T ss_pred HHHHc---CCCCEEEEECCCCHHHHHhhC
Confidence 22222 245799999999999999886
No 42
>PRK08118 topology modulation protein; Reviewed
Probab=97.81 E-value=7.1e-05 Score=56.14 Aligned_cols=75 Identities=21% Similarity=0.285 Sum_probs=54.4
Q ss_pred cCChHHHHHHHHHHC-------------CCCCCHHHHHHHHHHHHcCCCCCCCeEecC-CCCCHHHHHHHHHHHHhcCCC
Q 030234 8 AKTPLGIKAKEAMDK-------------GELVSDDLVVGIIDEAMKKPSCQKGFILDG-FPRTEVQAQKLDEMLEKQGKK 73 (181)
Q Consensus 8 ~~t~lg~~i~~~l~~-------------G~~vpd~~v~~ll~~~l~~~~~~~G~iLdG-fPrt~~Qa~~l~~~l~~~~~~ 73 (181)
.+|.+++.+.+.+.- ...++++.+..++.+.+.+ .+||+|| |+++.... + ..
T Consensus 13 GKSTlak~L~~~l~~~~~~lD~l~~~~~w~~~~~~~~~~~~~~~~~~----~~wVidG~~~~~~~~~--l--------~~ 78 (167)
T PRK08118 13 GKSTLARQLGEKLNIPVHHLDALFWKPNWEGVPKEEQITVQNELVKE----DEWIIDGNYGGTMDIR--L--------NA 78 (167)
T ss_pred CHHHHHHHHHHHhCCCceecchhhcccCCcCCCHHHHHHHHHHHhcC----CCEEEeCCcchHHHHH--H--------Hh
Confidence 456777777765321 3567888777777765543 5899999 66676422 2 14
Q ss_pred ccEEEEeecChHHHHHHHhCCCc
Q 030234 74 VDKVLNFAIDDAVLEERITGRWI 96 (181)
Q Consensus 74 p~~vi~L~~~~~~~~~Rl~~r~~ 96 (181)
+|.+|+|++|.+++..|+..|..
T Consensus 79 ~d~vi~Ld~p~~~~~~R~~~R~~ 101 (167)
T PRK08118 79 ADTIIFLDIPRTICLYRAFKRRV 101 (167)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHH
Confidence 89999999999999999999865
No 43
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=97.72 E-value=0.00024 Score=53.87 Aligned_cols=116 Identities=22% Similarity=0.241 Sum_probs=80.2
Q ss_pred HHHHHHHHCCCCCCHHHHHH--------HHHHHHcCCCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCccEEEEeecCh-
Q 030234 14 IKAKEAMDKGELVSDDLVVG--------IIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDD- 84 (181)
Q Consensus 14 ~~i~~~l~~G~~vpd~~v~~--------ll~~~l~~~~~~~G~iLdGfPrt~~Qa~~l~~~l~~~~~~p~~vi~L~~~~- 84 (181)
..+.+.+.+|++++...... .|...+.+ .+.+|||+.|+...|++.. ...| .+|++..|+
T Consensus 57 ~ef~~~i~~g~fve~~~~~g~~YGt~~~~i~~~~~~---~~~~ild~~~~~~~~l~~~-------~~~~-~vIfi~~~s~ 125 (184)
T smart00072 57 EEFEDDIKSGLFLEWGEYSGNYYGTSKETIRQVAEQ---GKHCLLDIDPQGVKQLRKA-------QLYP-IVIFIAPPSS 125 (184)
T ss_pred HHHHHHHHcCCeEEEEEEcCcCcccCHHHHHHHHHc---CCeEEEEECHHHHHHHHHh-------CCCc-EEEEEeCcCH
Confidence 67888888898888655444 55555543 4689999999999988743 2334 788998555
Q ss_pred HHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCCEEEEeC
Q 030234 85 AVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHA 164 (181)
Q Consensus 85 ~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~~r~dd~~~~i~~Rl~~y~~~~~~l~~~y~~~~~l~~Ida 164 (181)
+.+.+|+.+| .+++.+.+++||........ .|.. .=..|..
T Consensus 126 ~~l~~rl~~R---------------------------------~~~~~~~i~~rl~~a~~~~~----~~~~--fd~~I~n 166 (184)
T smart00072 126 EELERRLRGR---------------------------------GTETAERIQKRLAAAQKEAQ----EYHL--FDYVIVN 166 (184)
T ss_pred HHHHHHHHhc---------------------------------CCCCHHHHHHHHHHHHHHHh----hhcc--CCEEEEC
Confidence 5688888765 34567889999997554432 2311 1134444
Q ss_pred CCChHHHHHHHHHHhc
Q 030234 165 EKPPQEVTSEVQKALS 180 (181)
Q Consensus 165 ~~~~~~v~~~i~~~l~ 180 (181)
+ +.++.+.++.++|+
T Consensus 167 ~-~l~~~~~~l~~~i~ 181 (184)
T smart00072 167 D-DLEDAYEELKEILE 181 (184)
T ss_pred c-CHHHHHHHHHHHHH
Confidence 4 78999999998875
No 44
>PRK13976 thymidylate kinase; Provisional
Probab=97.57 E-value=0.013 Score=45.52 Aligned_cols=133 Identities=14% Similarity=0.039 Sum_probs=73.5
Q ss_pred CChHHHHHHHHHHCCCCCCHH-HHHHHHHHHHcCC--------CCCCCeEecCCCCCHH--HH----------HHHHHHH
Q 030234 9 KTPLGIKAKEAMDKGELVSDD-LVVGIIDEAMKKP--------SCQKGFILDGFPRTEV--QA----------QKLDEML 67 (181)
Q Consensus 9 ~t~lg~~i~~~l~~G~~vpd~-~v~~ll~~~l~~~--------~~~~G~iLdGfPrt~~--Qa----------~~l~~~l 67 (181)
+|.+|+.|++++....-+... ...-....|..+. ....-+|.|.|.-+.- |. ..+....
T Consensus 41 ~~~~g~~ir~~l~~~~~~~~~~~~llf~a~R~~~~~~~I~p~l~~G~~VI~DRy~~S~~Ayq~~~~g~~~~~i~~l~~~~ 120 (209)
T PRK13976 41 GTSFNELVRGLLLSLKNLDKISELLLFIAMRREHFVKVILPALLQGKIVICDRFIDSTIAYQGYGCGVDLSLIRDLNDLV 120 (209)
T ss_pred CCHHHHHHHHHHcCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCcCHHHHhccccCCCCHHHHHHHHHHh
Confidence 578999999998752223322 2221222332221 1123478888876532 22 2222221
Q ss_pred HhcCCCccEEEEeecChHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHHhcH
Q 030234 68 EKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTE 147 (181)
Q Consensus 68 ~~~~~~p~~vi~L~~~~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~~r~dd~~~~i~~Rl~~y~~~~~ 147 (181)
....||++|+|++|.+++.+|+..++... -+.+.+++--+.|.+...
T Consensus 121 --~~~~PDl~i~Ldv~~e~a~~Ri~~~~~e~-------------------------------~~~~~l~~v~~~Y~~l~~ 167 (209)
T PRK13976 121 --VDKYPDITFVLDIDIELSLSRADKNGYEF-------------------------------MDLEFYDKVRKGFREIVI 167 (209)
T ss_pred --hCCCCCEEEEEeCCHHHHHHHhcccchhc-------------------------------ccHHHHHHHHHHHHHHHH
Confidence 13579999999999999999985433110 012223222233433322
Q ss_pred HHHHHHhhcCCEEEEeC---CCC---hHHHHHHHHHHhc
Q 030234 148 PVIDYYSKKGIVAQLHA---EKP---PQEVTSEVQKALS 180 (181)
Q Consensus 148 ~l~~~y~~~~~l~~Ida---~~~---~~~v~~~i~~~l~ 180 (181)
.+ ...+..||| +++ +++|.++|.+.|.
T Consensus 168 ----~~--~~~~~~id~~~~~~~~~~~e~v~~~i~~~i~ 200 (209)
T PRK13976 168 ----KN--PHRCHVITCIDAKDNIEDINSVHLEIVKLLH 200 (209)
T ss_pred ----hC--CCCeEEEECCCCccCcCCHHHHHHHHHHHHH
Confidence 11 225788898 455 9999999988764
No 45
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=97.55 E-value=0.0027 Score=49.51 Aligned_cols=74 Identities=18% Similarity=0.102 Sum_probs=46.2
Q ss_pred CCccEEEEeecChHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHH-HhcHHHH
Q 030234 72 KKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFH-KQTEPVI 150 (181)
Q Consensus 72 ~~p~~vi~L~~~~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~~r~dd~~~~i~~Rl~~y~-~~~~~l~ 150 (181)
..||++|+|++|.+.+.+|+..|... + ...-+.+ .-.++..+. +...+
T Consensus 141 ~~Pd~~i~l~~~~~~~~~Ri~~R~~~------~----------------------e~~~~~~-yl~~l~~~y~~~~~~-- 189 (219)
T cd02030 141 LPPHLVIYLDVPVPEVQKRIKKRGDP------H----------------------EMKVTSA-YLQDIENAYKKTFLP-- 189 (219)
T ss_pred CCCCEEEEEeCCHHHHHHHHHHcCCc------h----------------------hhcccHH-HHHHHHHHHHHHHHH--
Confidence 67999999999999999999877410 0 0001112 222333222 22121
Q ss_pred HHHhhcCCEEEEeCC--CChHHHHHHHHH
Q 030234 151 DYYSKKGIVAQLHAE--KPPQEVTSEVQK 177 (181)
Q Consensus 151 ~~y~~~~~l~~Ida~--~~~~~v~~~i~~ 177 (181)
.|.+...++.||++ .++++|..+|..
T Consensus 190 -~~~~~~~~i~id~~~~~~~e~i~~~I~~ 217 (219)
T cd02030 190 -EISEHSEVLQYDWTEAGDTEKVVEDIEY 217 (219)
T ss_pred -hhccCCCEEEEeCCChhhHHHHHHHHHc
Confidence 13333478899999 999999988764
No 46
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.51 E-value=0.00093 Score=51.69 Aligned_cols=70 Identities=17% Similarity=0.157 Sum_probs=52.4
Q ss_pred CccEEEEeecC--hHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHHhcHHHH
Q 030234 73 KVDKVLNFAID--DAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVI 150 (181)
Q Consensus 73 ~p~~vi~L~~~--~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~~r~dd~~~~i~~Rl~~y~~~~~~l~ 150 (181)
.|+.++++.+| .+++.+|+.+|. +++.+.+.+|+..+...+....
T Consensus 122 ~pd~~~if~~pps~e~l~~Rl~~R~---------------------------------~~~~~~~~~Rl~~~~~e~~~~~ 168 (206)
T PRK14738 122 VPEAVFIFLAPPSMDELTRRLELRR---------------------------------TESPEELERRLATAPLELEQLP 168 (206)
T ss_pred CCCeEEEEEeCCCHHHHHHHHHHcC---------------------------------CCCHHHHHHHHHHHHHHHhccc
Confidence 58888777774 568899998764 2356789999998766544221
Q ss_pred HHHhhcCCEEEEeCCCChHHHHHHHHHHhc
Q 030234 151 DYYSKKGIVAQLHAEKPPQEVTSEVQKALS 180 (181)
Q Consensus 151 ~~y~~~~~l~~Ida~~~~~~v~~~i~~~l~ 180 (181)
...++.||++.++++++++|.+.|.
T Consensus 169 -----~~~~~iId~~~~~e~v~~~i~~~l~ 193 (206)
T PRK14738 169 -----EFDYVVVNPEDRLDEAVAQIMAIIS 193 (206)
T ss_pred -----CCCEEEECCCCCHHHHHHHHHHHHH
Confidence 1257899999999999999998875
No 47
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=97.46 E-value=0.0014 Score=48.88 Aligned_cols=88 Identities=24% Similarity=0.330 Sum_probs=54.7
Q ss_pred CCCCHHHHHHHHHHHHhcCCCccEEEEeecChHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCCCcccC-CCCc
Q 030234 53 FPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQR-KDDT 131 (181)
Q Consensus 53 fPrt~~Qa~~l~~~l~~~~~~p~~vi~L~~~~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~~r-~dd~ 131 (181)
++-+....+.|. ....+|+|++|.+++.+|+..|.... + .|.. ++ .. .++.
T Consensus 81 ~vl~~~~~~~l~--------~~~~~v~l~~~~~~~~~Rl~~r~~~~--~--------rp~~------~~----~~~~~~~ 132 (171)
T PRK03731 81 IILTEENRHFMR--------NNGIVIYLCAPVSVLANRLEANPEED--Q--------RPTL------TG----KPISEEV 132 (171)
T ss_pred ccCCHHHHHHHH--------hCCEEEEEECCHHHHHHHHccccccc--c--------CCcC------CC----CChHHHH
Confidence 555555555442 24579999999999999998763110 0 0000 00 01 1223
Q ss_pred HHHHHHHHHHHHHhcHHHHHHHhhcCCEEEEeCCCChHHHHHHHHHHhc
Q 030234 132 AAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 180 (181)
Q Consensus 132 ~~~i~~Rl~~y~~~~~~l~~~y~~~~~l~~Ida~~~~~~v~~~i~~~l~ 180 (181)
.+.+++|...|.+.. .+.|||++++++|+.+|.+.|.
T Consensus 133 ~~~~~~r~~~y~~~a------------~~~Id~~~~~e~v~~~i~~~l~ 169 (171)
T PRK03731 133 AEVLAEREALYREVA------------HHIIDATQPPSQVVSEILSALA 169 (171)
T ss_pred HHHHHHHHHHHHHhC------------CEEEcCCCCHHHHHHHHHHHHh
Confidence 445555655555422 2789999999999999998874
No 48
>PRK13949 shikimate kinase; Provisional
Probab=97.32 E-value=0.01 Score=44.53 Aligned_cols=94 Identities=15% Similarity=0.231 Sum_probs=57.8
Q ss_pred CCeEec---CCCCCHHHHHHHHHHHHhcCCCccEEEEeecChHHHHHHHhCCC-cCCCCCCccccCCCCCCCCCCCCCCC
Q 030234 46 KGFILD---GFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW-IHPSSGRTYHTKFAPPKVPGVDDVTG 121 (181)
Q Consensus 46 ~G~iLd---GfPrt~~Qa~~l~~~l~~~~~~p~~vi~L~~~~~~~~~Rl~~r~-~~~~tg~~y~~~~~pp~~~~~~~~~~ 121 (181)
.+||+. |+|.+..+.+.|.+ -+.||+|++|.+++++|+..+. .-|
T Consensus 71 ~~~vis~Ggg~~~~~~~~~~l~~--------~~~vi~L~~~~~~~~~Ri~~~~~~RP----------------------- 119 (169)
T PRK13949 71 EDVVISTGGGAPCFFDNMELMNA--------SGTTVYLKVSPEVLFVRLRLAKQQRP----------------------- 119 (169)
T ss_pred CCEEEEcCCcccCCHHHHHHHHh--------CCeEEEEECCHHHHHHHHhcCCCCCC-----------------------
Confidence 577773 78998888887642 3579999999999999997532 111
Q ss_pred CCcccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCCEEEEeCCC-ChHHHHHHHHHHh
Q 030234 122 EPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEK-PPQEVTSEVQKAL 179 (181)
Q Consensus 122 ~~l~~r~dd~~~~i~~Rl~~y~~~~~~l~~~y~~~~~l~~Ida~~-~~~~v~~~i~~~l 179 (181)
+.. +.+.+.+ ++.+++....-..+|... . +.||++. +++++++.|.+.|
T Consensus 120 --~~~--~~~~~~~---~~~i~~l~~~R~~~Y~~a-d-~~id~~~~~~~e~~~~I~~~~ 169 (169)
T PRK13949 120 --LLK--GKSDEEL---LDFIIEALEKRAPFYRQA-K-IIFNADKLEDESQIEQLVQRL 169 (169)
T ss_pred --CCC--CCChHHH---HHHHHHHHHHHHHHHHhC-C-EEEECCCCCHHHHHHHHHHhC
Confidence 110 1112222 223333333344466553 3 5677555 8889999987754
No 49
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=97.02 E-value=0.013 Score=46.56 Aligned_cols=97 Identities=16% Similarity=0.098 Sum_probs=60.3
Q ss_pred CCeEecCCCCCHHHHHHHHHHHHhcCCCccEEEEeecChHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCCCcc
Q 030234 46 KGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLI 125 (181)
Q Consensus 46 ~G~iLdGfPrt~~Qa~~l~~~l~~~~~~p~~vi~L~~~~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~ 125 (181)
..+|+||......+...+.......+ .+..+|+|++|.+.+.+|...|..
T Consensus 69 ~~VI~D~~~~~~~~r~~l~~~ak~~~-~~~~~I~l~~p~e~~~~Rn~~R~~----------------------------- 118 (249)
T TIGR03574 69 YSVIVDDTNYYNSMRRDLINIAKEYN-KNYIIIYLKAPLDTLLRRNIERGE----------------------------- 118 (249)
T ss_pred CeEEEeccchHHHHHHHHHHHHHhCC-CCEEEEEecCCHHHHHHHHHhCCC-----------------------------
Confidence 34899998766665555544433443 567899999999999999887631
Q ss_pred cCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCCEEEEeCCC--ChHHHHHHHHHHh
Q 030234 126 QRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEK--PPQEVTSEVQKAL 179 (181)
Q Consensus 126 ~r~dd~~~~i~~Rl~~y~~~~~~l~~~y~~~~~l~~Ida~~--~~~~v~~~i~~~l 179 (181)
....+.+.+....|.. |...|+- ....+.||++. +++++++.|...+
T Consensus 119 ---~~~~~~i~~l~~r~e~---p~~~~~w-d~~~~~vd~~~~~~~~ei~~~i~~~~ 167 (249)
T TIGR03574 119 ---KIPNEVIKDMYEKFDE---PGTKYSW-DLPDLTIDTTKKIDYNEILEEILEIS 167 (249)
T ss_pred ---CCCHHHHHHHHHhhCC---CCCCCCc-cCceEEecCCCCCCHHHHHHHHHHHh
Confidence 0123445544444432 2222221 12677888876 6688888887754
No 50
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.00 E-value=0.0062 Score=45.61 Aligned_cols=67 Identities=16% Similarity=0.191 Sum_probs=49.2
Q ss_pred ccEEEEeecChHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHHhcHHHHHHH
Q 030234 74 VDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYY 153 (181)
Q Consensus 74 p~~vi~L~~~~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~~r~dd~~~~i~~Rl~~y~~~~~~l~~~y 153 (181)
...+|+|++|.+++.+|+..|. |+ +++.+.+|+..+.....
T Consensus 111 ~~~~i~l~~~~~~~~~Rl~~R~-------------------------------~~--~~~~~~~rl~~~~~~~~------ 151 (179)
T TIGR02322 111 NLLVVNITASPDVLAQRLAARG-------------------------------RE--SREEIEERLARSARFAA------ 151 (179)
T ss_pred CcEEEEEECCHHHHHHHHHHcC-------------------------------CC--CHHHHHHHHHHHhhccc------
Confidence 3479999999999999999773 11 24667788764433321
Q ss_pred hhcCCEEEEeCCCChHHHHHHHHHHhc
Q 030234 154 SKKGIVAQLHAEKPPQEVTSEVQKALS 180 (181)
Q Consensus 154 ~~~~~l~~Ida~~~~~~v~~~i~~~l~ 180 (181)
....++.|+.+.+++++..+|.+.|.
T Consensus 152 -~~~~~~vi~~~~~~ee~~~~i~~~l~ 177 (179)
T TIGR02322 152 -APADVTTIDNSGSLEVAGETLLRLLR 177 (179)
T ss_pred -ccCCEEEEeCCCCHHHHHHHHHHHHc
Confidence 12246778999999999999999875
No 51
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.87 E-value=0.023 Score=43.06 Aligned_cols=67 Identities=15% Similarity=0.215 Sum_probs=49.4
Q ss_pred CccEEEEeecChHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHHhcHHHHHH
Q 030234 73 KVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDY 152 (181)
Q Consensus 73 ~p~~vi~L~~~~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~~r~dd~~~~i~~Rl~~y~~~~~~l~~~ 152 (181)
.+-.+|+|++|.+++.+|+.+|. | .+++.+.+|+..+. +
T Consensus 110 ~~~~vi~l~~s~e~l~~RL~~R~-------------------------------~--~~~~~i~~rl~r~~--------~ 148 (186)
T PRK10078 110 SALLPVCLQVSPEILRQRLENRG-------------------------------R--ENASEINARLARAA--------R 148 (186)
T ss_pred CCEEEEEEeCCHHHHHHHHHHhC-------------------------------C--CCHHHHHHHHHHhh--------h
Confidence 34568999999999999998763 1 13456888885432 3
Q ss_pred HhhcCCEEEEeCCCChHHHHHHHHHHhcC
Q 030234 153 YSKKGIVAQLHAEKPPQEVTSEVQKALSA 181 (181)
Q Consensus 153 y~~~~~l~~Ida~~~~~~v~~~i~~~l~~ 181 (181)
|. ....+.||.+++++++.++|.+.|.+
T Consensus 149 ~~-~ad~~vi~~~~s~ee~~~~i~~~l~~ 176 (186)
T PRK10078 149 YQ-PQDCHTLNNDGSLRQSVDTLLTLLHL 176 (186)
T ss_pred hc-cCCEEEEeCCCCHHHHHHHHHHHHhh
Confidence 32 23467888889999999999988753
No 52
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=96.82 E-value=0.0074 Score=46.75 Aligned_cols=69 Identities=14% Similarity=0.121 Sum_probs=54.4
Q ss_pred CccEEEEeecChHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHHhcHHHHHH
Q 030234 73 KVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDY 152 (181)
Q Consensus 73 ~p~~vi~L~~~~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~~r~dd~~~~i~~Rl~~y~~~~~~l~~~ 152 (181)
.+|.+|++.+|.++.++|+..|. ..+.+.+.+|+..+......+. +
T Consensus 133 ~~d~ii~V~a~~e~~~~Rl~~R~---------------------------------~~s~e~~~~Ri~~q~~~~~~~~-~ 178 (208)
T PRK14731 133 GLDFIVVVAADTELRLERAVQRG---------------------------------MGSREEIRRRIAAQWPQEKLIE-R 178 (208)
T ss_pred cCCeEEEEECCHHHHHHHHHHcC---------------------------------CCCHHHHHHHHHHcCChHHHHH-h
Confidence 46999999999999999999874 1256889999988766655552 2
Q ss_pred HhhcCCEEEEeCCCChHHHHHHHHHHhc
Q 030234 153 YSKKGIVAQLHAEKPPQEVTSEVQKALS 180 (181)
Q Consensus 153 y~~~~~l~~Ida~~~~~~v~~~i~~~l~ 180 (181)
.-+.|+.++++++++.++.++++
T Consensus 179 -----ad~vI~N~g~~e~l~~~i~~~~~ 201 (208)
T PRK14731 179 -----ADYVIYNNGTLDELKAQTEQLYQ 201 (208)
T ss_pred -----CCEEEECCCCHHHHHHHHHHHHH
Confidence 13578889999999999988764
No 53
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=96.79 E-value=0.034 Score=42.09 Aligned_cols=50 Identities=18% Similarity=0.157 Sum_probs=34.4
Q ss_pred CCeEecCCCCCHH--------H-------HHHHHHHH---HhcCCCccEEEEeecChHHHHHHHhCCC
Q 030234 46 KGFILDGFPRTEV--------Q-------AQKLDEML---EKQGKKVDKVLNFAIDDAVLEERITGRW 95 (181)
Q Consensus 46 ~G~iLdGfPrt~~--------Q-------a~~l~~~l---~~~~~~p~~vi~L~~~~~~~~~Rl~~r~ 95 (181)
..+|+|.||-+.- | ...+..++ ......|+++|+|+++.+++.+|+..|.
T Consensus 79 ~~vI~DR~~~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~~i~l~~~~~~~~~Ri~~R~ 146 (193)
T cd01673 79 QGVILERSIFSDRVFAEANLKEGGIMKTEYDLYNELFDNLIPELLPPDLVIYLDASPETCLKRIKKRG 146 (193)
T ss_pred CceEEEcChhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhcCCCCCEEEEEeCCHHHHHHHHHhcC
Confidence 5689999988532 1 11111121 1123579999999999999999998774
No 54
>PRK04040 adenylate kinase; Provisional
Probab=96.77 E-value=0.05 Score=41.51 Aligned_cols=78 Identities=13% Similarity=0.071 Sum_probs=52.0
Q ss_pred CCccEEEEeecChHHHHHHHhCC--CcCCCCCCccccCCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHHhcHHH
Q 030234 72 KKVDKVLNFAIDDAVLEERITGR--WIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPV 149 (181)
Q Consensus 72 ~~p~~vi~L~~~~~~~~~Rl~~r--~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~~r~dd~~~~i~~Rl~~y~~~~~~l 149 (181)
..|+.+|+|.+|.+.+++|.+.. | .|..++++.++.|+..-......
T Consensus 109 l~pd~ii~l~a~p~~i~~Rrl~d~~R------------------------------~R~~es~e~I~~~~~~a~~~a~~- 157 (188)
T PRK04040 109 LNPDVIVLIEADPDEILMRRLRDETR------------------------------RRDVETEEDIEEHQEMNRAAAMA- 157 (188)
T ss_pred cCCCEEEEEeCCHHHHHHHHhccccc------------------------------CCCCCCHHHHHHHHHHHHHHHHH-
Confidence 48999999999999998888742 1 15566788888887664443221
Q ss_pred HHHHhhcCCEEEEeCCCChHHHHHHHHHHhc
Q 030234 150 IDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 180 (181)
Q Consensus 150 ~~~y~~~~~l~~Ida~~~~~~v~~~i~~~l~ 180 (181)
..++...-.++.+|-++.+++.+.++.++|.
T Consensus 158 ~a~~~g~~~~iI~N~d~~~e~a~~~i~~ii~ 188 (188)
T PRK04040 158 YAVLTGATVKIVENREGLLEEAAEEIVEVLR 188 (188)
T ss_pred HHHhcCCeEEEEECCCCCHHHHHHHHHHHhC
Confidence 1112111235566666669999999988763
No 55
>PRK06762 hypothetical protein; Provisional
Probab=96.33 E-value=0.094 Score=38.64 Aligned_cols=95 Identities=8% Similarity=0.062 Sum_probs=58.8
Q ss_pred CCeEecCCCCCHHHHHHHHHHHHhcCCCccEEEEeecChHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCCCcc
Q 030234 46 KGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLI 125 (181)
Q Consensus 46 ~G~iLdGfPrt~~Qa~~l~~~l~~~~~~p~~vi~L~~~~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~ 125 (181)
.-+|+||.-........+..+.... ..+..+|+|++|.+++.+|...|...
T Consensus 69 ~~vild~~~~~~~~~~~~~~l~~~~-~~~~~~v~Ldap~e~~~~R~~~R~~~---------------------------- 119 (166)
T PRK06762 69 EFVILEGILNSDRYGPMLKELIHLF-RGNAYTYYFDLSFEETLRRHSTRPKS---------------------------- 119 (166)
T ss_pred CEEEEchhhccHhHHHHHHHHHHhc-CCCeEEEEEeCCHHHHHHHHhccccc----------------------------
Confidence 4588999854444444444443333 34678999999999999999887420
Q ss_pred cCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCCEEEEeCCCChHHHHHHHHHHhc
Q 030234 126 QRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 180 (181)
Q Consensus 126 ~r~dd~~~~i~~Rl~~y~~~~~~l~~~y~~~~~l~~Ida~~~~~~v~~~i~~~l~ 180 (181)
....++.++.++..+.. + ..+ -.+.++.+.++++|+++|...+.
T Consensus 120 --~~~~~~~l~~~~~~~~~----~-~~~----~~~~~~~~~~~~~v~~~i~~~~~ 163 (166)
T PRK06762 120 --HEFGEDDMRRWWNPHDT----L-GVI----GETIFTDNLSLKDIFDAILTDIG 163 (166)
T ss_pred --ccCCHHHHHHHHhhcCC----c-CCC----CeEEecCCCCHHHHHHHHHHHhc
Confidence 00124455554433211 1 111 23666778899999999988763
No 56
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.32 E-value=0.055 Score=40.81 Aligned_cols=71 Identities=23% Similarity=0.366 Sum_probs=48.5
Q ss_pred CccEEEEeecChHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHH--HHHhcHHHH
Q 030234 73 KVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEA--FHKQTEPVI 150 (181)
Q Consensus 73 ~p~~vi~L~~~~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~~r~dd~~~~i~~Rl~~--y~~~~~~l~ 150 (181)
.+|+||+|.++.+.+.+|+.+|...+ +.|..-+++ ..--.....
T Consensus 82 ~~dlVvVLR~~p~~L~~RLk~RGy~~----------------------------------eKI~ENveAEi~~vi~~EA~ 127 (180)
T COG1936 82 DCDLVVVLRADPEVLYERLKGRGYSE----------------------------------EKILENVEAEILDVILIEAV 127 (180)
T ss_pred CCCEEEEEcCCHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHHHHHHHH
Confidence 38999999999999999999997532 222222211 111122233
Q ss_pred HHHhhcCCEEEEe-CCCChHHHHHHHHHHhc
Q 030234 151 DYYSKKGIVAQLH-AEKPPQEVTSEVQKALS 180 (181)
Q Consensus 151 ~~y~~~~~l~~Id-a~~~~~~v~~~i~~~l~ 180 (181)
+.| ..++.|| .+.+++++.+.|..++.
T Consensus 128 E~~---~~v~evdtt~~s~ee~~~~i~~ii~ 155 (180)
T COG1936 128 ERF---EAVIEVDTTNRSPEEVAEEIIDIIG 155 (180)
T ss_pred Hhc---CceEEEECCCCCHHHHHHHHHHHHc
Confidence 344 3688899 67899999999998875
No 57
>PF01712 dNK: Deoxynucleoside kinase; InterPro: IPR002624 This family consists of various deoxynucleoside kinases including cytidine (2.7.1.74 from EC), guanosine (2.7.1.113 from EC), adenosine (2.7.1.76 from EC) and thymidine kinase (2.7.1.21 from EC, which also phosphorylates deoxyuridine and deoxycytosine. These enzymes catalyse the production of deoxynucleotide 5'-monophosphate from a deoxynucleoside, using ATP and yielding ADP in the process.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006139 nucleobase-containing compound metabolic process; PDB: 2JAS_B 2JAT_B 2JAQ_A 2VP4_D 1ZMX_F 1ZM7_C 1OE0_B 2VP9_C 2VPP_B 2VP6_G ....
Probab=96.28 E-value=0.0043 Score=45.39 Aligned_cols=24 Identities=25% Similarity=0.228 Sum_probs=19.3
Q ss_pred CC-ccEEEEeecChHHHHHHHhCCC
Q 030234 72 KK-VDKVLNFAIDDAVLEERITGRW 95 (181)
Q Consensus 72 ~~-p~~vi~L~~~~~~~~~Rl~~r~ 95 (181)
.. ||++|+|++|.+++++|+..|.
T Consensus 65 ~~~pdl~IYL~~~~e~~~~RI~kRg 89 (146)
T PF01712_consen 65 PKSPDLIIYLDASPETCLERIKKRG 89 (146)
T ss_dssp CHH-SEEEEEE--HHHHHHHHHHCT
T ss_pred hccCCeEEEEeCCHHHHHHHHHHhC
Confidence 45 9999999999999999999885
No 58
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=96.19 E-value=0.00075 Score=52.01 Aligned_cols=138 Identities=12% Similarity=0.146 Sum_probs=71.9
Q ss_pred hhHHHhcCChHH-HHHHHHHHCCCCCCHHHHHHHHHHHHcCCC---------------CCCCeEecCCCCCHHHHHHHHH
Q 030234 2 LRAAVAAKTPLG-IKAKEAMDKGELVSDDLVVGIIDEAMKKPS---------------CQKGFILDGFPRTEVQAQKLDE 65 (181)
Q Consensus 2 lr~~i~~~t~lg-~~i~~~l~~G~~vpd~~v~~ll~~~l~~~~---------------~~~G~iLdGfPrt~~Qa~~l~~ 65 (181)
+|+.+...++.+ ...++..+.|+.++++....+++..+.+.+ ....+|+||..-...+....
T Consensus 38 ~r~~~r~~~~~~p~l~~s~~~a~~~~~~~~~~~~~~~y~~q~~~v~~~L~~va~~~l~~G~sVIvEgv~l~p~~~~~~-- 115 (197)
T PRK12339 38 LREFLRPYVDDEPVLAKSVYDAWEFYGSMTDENIVKGYLDQARAIMPGINRVIRRALLNGEDLVIESLYFHPPMIDEN-- 115 (197)
T ss_pred HHHHHHHhcCCCCCcccccHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEecCcCHHHHHHH--
Confidence 344444433333 334444555666776555444443222211 12346777766555554321
Q ss_pred HHHhcCCCccEEEEeec-ChHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHH
Q 030234 66 MLEKQGKKVDKVLNFAI-DDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHK 144 (181)
Q Consensus 66 ~l~~~~~~p~~vi~L~~-~~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~~r~dd~~~~i~~Rl~~y~~ 144 (181)
... . ..++++.+ +++.+.+|+..|..+. .++.+ .+|+..|-.
T Consensus 116 --~~~--~-v~~i~l~v~d~e~lr~Rl~~R~~~~-----------------------------~~~~p---~~~~~~~~~ 158 (197)
T PRK12339 116 --RTN--N-IRAFYLYIRDAELHRSRLADRINYT-----------------------------HKNSP---GKRLAEHLP 158 (197)
T ss_pred --Hhc--C-eEEEEEEeCCHHHHHHHHHHHhhcc-----------------------------cCCCc---HHHHHHHHH
Confidence 111 1 25677776 4667779999886321 11121 235566666
Q ss_pred hcHHHHHHHhh---cCCEEEEeCCCChHHHHHHHHHHh
Q 030234 145 QTEPVIDYYSK---KGIVAQLHAEKPPQEVTSEVQKAL 179 (181)
Q Consensus 145 ~~~~l~~~y~~---~~~l~~Ida~~~~~~v~~~i~~~l 179 (181)
++..+.+|.-+ ...+-.||+. +.++.++.+...+
T Consensus 159 ~ir~i~~~l~~~a~~~~i~~i~~~-~~~~~~~~~~~~~ 195 (197)
T PRK12339 159 EYRTIMDYSIADARGYNIKVIDTD-NYREARNPLLDPI 195 (197)
T ss_pred HHHHHHHHHHHHHHHcCCCeecCc-cHHHHHHHHHHHh
Confidence 67777777643 2346667655 5677666666543
No 59
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=96.12 E-value=0.045 Score=41.28 Aligned_cols=92 Identities=18% Similarity=0.231 Sum_probs=58.3
Q ss_pred CCCeEecCCCCCHHHHHHHHHHHHhcCCCccEEEEeecChHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCCCc
Q 030234 45 QKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPL 124 (181)
Q Consensus 45 ~~G~iLdGfPrt~~Qa~~l~~~l~~~~~~p~~vi~L~~~~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l 124 (181)
..|||+..|-+...... + ... ..|-.+|+|++|.+++.+|+..|.-+
T Consensus 76 ~~g~iv~s~~~~~~R~~-~----r~~-~~~~~~v~l~a~~~~l~~Rl~~R~~~--------------------------- 122 (176)
T PRK09825 76 ETGFIVCSSLKKQYRDI-L----RKS-SPNVHFLWLDGDYETILARMQRRAGH--------------------------- 122 (176)
T ss_pred CCEEEEEEecCHHHHHH-H----Hhh-CCCEEEEEEeCCHHHHHHHHhcccCC---------------------------
Confidence 57999988865433222 1 222 34568999999999999999988521
Q ss_pred ccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCCEEEEeCCCChHHHHHHHHHHhc
Q 030234 125 IQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 180 (181)
Q Consensus 125 ~~r~dd~~~~i~~Rl~~y~~~~~~l~~~y~~~~~l~~Ida~~~~~~v~~~i~~~l~ 180 (181)
.-..+.+...+..|.. .-.....++.||++++++++..++...+.
T Consensus 123 ----~~~~~vl~~Q~~~~e~-------~~~~e~~~~~~d~~~~~~~~~~~~~~~~~ 167 (176)
T PRK09825 123 ----FMPPDLLQSQFDALER-------PCADEHDIARIDVNHDIENVTEQCRQAVQ 167 (176)
T ss_pred ----CCCHHHHHHHHHHcCC-------CCCCcCCeEEEECCCCHHHHHHHHHHHHH
Confidence 0123444444443331 11112348999999999888887776653
No 60
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=95.51 E-value=0.074 Score=40.94 Aligned_cols=69 Identities=13% Similarity=0.110 Sum_probs=50.6
Q ss_pred CccEEEEeecChHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHHhcHHHHHH
Q 030234 73 KVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDY 152 (181)
Q Consensus 73 ~p~~vi~L~~~~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~~r~dd~~~~i~~Rl~~y~~~~~~l~~~ 152 (181)
.+|.+|++++|.++.++|+..|+ .-+.+.+.+|+..+.... +
T Consensus 125 ~~D~vi~V~a~~e~ri~Rl~~R~---------------------------------g~s~e~~~~ri~~Q~~~~-----~ 166 (200)
T PRK14734 125 KMDLVVVVDVDVEERVRRLVEKR---------------------------------GLDEDDARRRIAAQIPDD-----V 166 (200)
T ss_pred cCCeEEEEECCHHHHHHHHHHcC---------------------------------CCCHHHHHHHHHhcCCHH-----H
Confidence 57999999999999999998773 123567888887655441 1
Q ss_pred HhhcCCEEEEeCCCChHHHHHHHHHHhc
Q 030234 153 YSKKGIVAQLHAEKPPQEVTSEVQKALS 180 (181)
Q Consensus 153 y~~~~~l~~Ida~~~~~~v~~~i~~~l~ 180 (181)
+... --+.||.+++++++..++..+++
T Consensus 167 k~~~-ad~vI~N~g~~e~l~~~v~~~~~ 193 (200)
T PRK14734 167 RLKA-ADIVVDNNGTREQLLAQVDGLIA 193 (200)
T ss_pred HHHh-CCEEEECcCCHHHHHHHHHHHHH
Confidence 1111 23679999999999999987753
No 61
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.46 E-value=0.17 Score=36.01 Aligned_cols=62 Identities=19% Similarity=0.311 Sum_probs=43.8
Q ss_pred HHHHHHHHHcCCCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCccEEEEeecChHHHHHHHhCCCc
Q 030234 31 VVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWI 96 (181)
Q Consensus 31 v~~ll~~~l~~~~~~~G~iLdGfPrt~~Qa~~l~~~l~~~~~~p~~vi~L~~~~~~~~~Rl~~r~~ 96 (181)
+...+...+... ..+|+|+.-.+..+...+.+++.+.+. +..+|+|+++++++.+|+..|..
T Consensus 59 ~~~~~~~~l~~g---~~~vvd~~~~~~~~r~~~~~~~~~~~~-~~~~v~l~~~~~~~~~R~~~R~~ 120 (143)
T PF13671_consen 59 LNAAIRKALRNG---NSVVVDNTNLSREERARLRELARKHGY-PVRVVYLDAPEETLRERLAQRNR 120 (143)
T ss_dssp HHHHHHHHHHTT----EEEEESS--SHHHHHHHHHHHHHCTE-EEEEEEECHHHHHHHHHHHTTHC
T ss_pred HHHHHHHHHHcC---CCceeccCcCCHHHHHHHHHHHHHcCC-eEEEEEEECCHHHHHHHHHhcCC
Confidence 334445555332 458999887778888888777766654 45799999999999999999863
No 62
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=95.07 E-value=0.14 Score=39.17 Aligned_cols=69 Identities=14% Similarity=0.122 Sum_probs=49.9
Q ss_pred CccEEEEeecChHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHHhcHHHHHH
Q 030234 73 KVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDY 152 (181)
Q Consensus 73 ~p~~vi~L~~~~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~~r~dd~~~~i~~Rl~~y~~~~~~l~~~ 152 (181)
..|.||++++|.++..+|+..|. ..+.+.+..|+..+.. ..+.
T Consensus 124 ~~D~vi~V~a~~e~~~~Rl~~R~---------------------------------~~s~e~~~~ri~~Q~~----~~~~ 166 (194)
T PRK00081 124 LVDRVLVVDAPPETQLERLMARD---------------------------------GLSEEEAEAIIASQMP----REEK 166 (194)
T ss_pred hCCeEEEEECCHHHHHHHHHHcC---------------------------------CCCHHHHHHHHHHhCC----HHHH
Confidence 47999999999999999998763 1245678888875432 2221
Q ss_pred HhhcCCEEEEeCCCChHHHHHHHHHHhc
Q 030234 153 YSKKGIVAQLHAEKPPQEVTSEVQKALS 180 (181)
Q Consensus 153 y~~~~~l~~Ida~~~~~~v~~~i~~~l~ 180 (181)
-.. --+.|+.+++++++.+++.++++
T Consensus 167 ~~~--ad~vI~N~g~~e~l~~qv~~i~~ 192 (194)
T PRK00081 167 LAR--ADDVIDNNGDLEELRKQVERLLQ 192 (194)
T ss_pred HHh--CCEEEECCCCHHHHHHHHHHHHH
Confidence 111 12678888999999999988764
No 63
>PRK07261 topology modulation protein; Provisional
Probab=95.02 E-value=0.084 Score=39.52 Aligned_cols=59 Identities=17% Similarity=0.250 Sum_probs=43.9
Q ss_pred CCHHHHHHHHHHHHcCCCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCccEEEEeecChHHHHHHHhCCCc
Q 030234 26 VSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWI 96 (181)
Q Consensus 26 vpd~~v~~ll~~~l~~~~~~~G~iLdGfPrt~~Qa~~l~~~l~~~~~~p~~vi~L~~~~~~~~~Rl~~r~~ 96 (181)
.|.+-....+...+.+ ..||+||...+..+...+. ..|.+|+|++|...++.|+..|.+
T Consensus 43 ~~~~~~~~~~~~~~~~----~~wIidg~~~~~~~~~~l~--------~ad~vI~Ld~p~~~~~~R~lkR~~ 101 (171)
T PRK07261 43 RDDDDMIADISNFLLK----HDWIIDGNYSWCLYEERMQ--------EADQIIFLNFSRFNCLYRAFKRYL 101 (171)
T ss_pred CCHHHHHHHHHHHHhC----CCEEEcCcchhhhHHHHHH--------HCCEEEEEcCCHHHHHHHHHHHHH
Confidence 4455556666665543 3499999998766655543 358999999999999999998865
No 64
>PRK00300 gmk guanylate kinase; Provisional
Probab=94.93 E-value=0.3 Score=37.16 Aligned_cols=45 Identities=13% Similarity=0.183 Sum_probs=31.5
Q ss_pred CCcHHHHHHHHHHHHHhcHHHHHHHhhcCCEEEEeCCCChHHHHHHHHHHhc
Q 030234 129 DDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 180 (181)
Q Consensus 129 dd~~~~i~~Rl~~y~~~~~~l~~~y~~~~~l~~Ida~~~~~~v~~~i~~~l~ 180 (181)
+++.+.+++|+..|...+.+ +.... ++.+| .++++++.++..+++
T Consensus 139 ~~~~~~i~~rl~~~~~~~~~----~~~~d-~vi~n--~~~e~~~~~l~~il~ 183 (205)
T PRK00300 139 TDSEEVIARRLAKAREEIAH----ASEYD-YVIVN--DDLDTALEELKAIIR 183 (205)
T ss_pred CCCHHHHHHHHHHHHHHHHh----HHhCC-EEEEC--CCHHHHHHHHHHHHH
Confidence 46778999999998876543 33222 33344 489999999998774
No 65
>PRK13947 shikimate kinase; Provisional
Probab=94.53 E-value=0.66 Score=34.14 Aligned_cols=21 Identities=14% Similarity=0.180 Sum_probs=18.4
Q ss_pred cEEEEeecChHHHHHHHhCCC
Q 030234 75 DKVLNFAIDDAVLEERITGRW 95 (181)
Q Consensus 75 ~~vi~L~~~~~~~~~Rl~~r~ 95 (181)
..+|+|+++.+.+.+|+..|.
T Consensus 95 ~~vv~L~~~~~~l~~Rl~~r~ 115 (171)
T PRK13947 95 GVVICLKARPEVILRRVGKKK 115 (171)
T ss_pred CEEEEEECCHHHHHHHhcCCC
Confidence 469999999999999998764
No 66
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=94.30 E-value=0.7 Score=34.29 Aligned_cols=106 Identities=25% Similarity=0.321 Sum_probs=67.0
Q ss_pred CCCHHHHHHHHHHHHcCCCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCccEEEEeecChHHHHHHHhCCCcCCCCCCcc
Q 030234 25 LVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTY 104 (181)
Q Consensus 25 ~vpd~~v~~ll~~~l~~~~~~~G~iLdGfPrt~~Qa~~l~~~l~~~~~~p~~vi~L~~~~~~~~~Rl~~r~~~~~tg~~y 104 (181)
.+.++-+.+.|..+|.+ .|.|+|=-- +.+|.+ ...|+|++|.||.+++.+||..|..+..
T Consensus 59 i~DEdkv~D~Le~~m~~----Gg~IVDyHg-----Cd~Fpe------rwfdlVvVLr~~~s~LY~RL~sRgY~e~----- 118 (176)
T KOG3347|consen 59 ILDEDKVLDELEPLMIE----GGNIVDYHG-----CDFFPE------RWFDLVVVLRTPNSVLYDRLKSRGYSEK----- 118 (176)
T ss_pred cccHHHHHHHHHHHHhc----CCcEEeecc-----cCccch------hheeEEEEEecCchHHHHHHHHcCCCHH-----
Confidence 46778888888887765 355554211 111111 2478999999999999999998864210
Q ss_pred ccCCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCCEEEEeCCCChHHHHHHHHHHh
Q 030234 105 HTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKAL 179 (181)
Q Consensus 105 ~~~~~pp~~~~~~~~~~~~l~~r~dd~~~~i~~Rl~~y~~~~~~l~~~y~~~~~l~~Ida~~~~~~v~~~i~~~l 179 (181)
.-.-....+.|.-.....++.|... +++.+.++.. +++...|.+.+
T Consensus 119 ---------------------------Ki~eNiecEIfgv~~eea~eSy~~~-iV~eL~s~~~-Eem~~ni~ri~ 164 (176)
T KOG3347|consen 119 ---------------------------KIKENIECEIFGVVLEEARESYSPK-IVVELQSETK-EEMESNISRIL 164 (176)
T ss_pred ---------------------------HHhhhcchHHHHHHHHHHHHHcCCc-ceeecCcCCH-HHHHHHHHHHH
Confidence 0001111234555566777888753 7888887765 77777666543
No 67
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=94.28 E-value=0.25 Score=36.21 Aligned_cols=89 Identities=19% Similarity=0.233 Sum_probs=53.4
Q ss_pred CeEecCCCCCHHHHHHHHHHHHhcCCCccEEEEeecChHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCCCccc
Q 030234 47 GFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQ 126 (181)
Q Consensus 47 G~iLdGfPrt~~Qa~~l~~~l~~~~~~p~~vi~L~~~~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~~ 126 (181)
.+|-.|+++.. .... +...+. .-.+|+|++|.+++.+|+..|.-+
T Consensus 73 ~Vi~~t~~~~~-~r~~----~~~~~~-~~~~i~l~~~~e~~~~R~~~R~~~----------------------------- 117 (163)
T TIGR01313 73 GIITCSALKRH-YRDI----LREAEP-NLHFIYLSGDKDVILERMKARKGH----------------------------- 117 (163)
T ss_pred EEEEecccHHH-HHHH----HHhcCC-CEEEEEEeCCHHHHHHHHHhccCC-----------------------------
Confidence 46667876432 2222 222332 224799999999999999987410
Q ss_pred CCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCCEEEEeCCCChHHHHHHHHHHh
Q 030234 127 RKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKAL 179 (181)
Q Consensus 127 r~dd~~~~i~~Rl~~y~~~~~~l~~~y~~~~~l~~Ida~~~~~~v~~~i~~~l 179 (181)
....+.+..++..+.. |. + ....++.||++++++++..++...|
T Consensus 118 --~~~~~~i~~~~~~~~~---~~---~-~e~~~~~id~~~~~~~~~~~~~~~~ 161 (163)
T TIGR01313 118 --FMKADMLESQFAALEE---PL---A-DETDVLRVDIDQPLEGVEEDCIAVV 161 (163)
T ss_pred --CCCHHHHHHHHHHhCC---CC---C-CCCceEEEECCCCHHHHHHHHHHHH
Confidence 0012345554443221 00 0 1124789999999999999988776
No 68
>PRK00131 aroK shikimate kinase; Reviewed
Probab=94.22 E-value=0.88 Score=33.26 Aligned_cols=21 Identities=14% Similarity=0.082 Sum_probs=18.4
Q ss_pred cEEEEeecChHHHHHHHhCCC
Q 030234 75 DKVLNFAIDDAVLEERITGRW 95 (181)
Q Consensus 75 ~~vi~L~~~~~~~~~Rl~~r~ 95 (181)
..+|+|++|.+.+.+|+..|.
T Consensus 98 ~~~v~l~~~~~~~~~R~~~~~ 118 (175)
T PRK00131 98 GTVVYLDASFEELLRRLRRDR 118 (175)
T ss_pred CEEEEEECCHHHHHHHhcCCC
Confidence 478999999999999998764
No 69
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=94.16 E-value=0.64 Score=35.08 Aligned_cols=82 Identities=15% Similarity=0.185 Sum_probs=55.0
Q ss_pred CeEecCCCCCHHHHHHHHHHHHhcCCCccEEEEeecChHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCCCccc
Q 030234 47 GFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQ 126 (181)
Q Consensus 47 G~iLdGfPrt~~Qa~~l~~~l~~~~~~p~~vi~L~~~~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~~ 126 (181)
++|+-+.|.-.+. .+. ...|.++++++|.++..+|+..|.
T Consensus 106 ~~vvi~~pll~e~--~~~-------~~~D~vv~V~~~~~~~~~Rl~~R~------------------------------- 145 (188)
T TIGR00152 106 AYVLLDVPLLFEN--KLR-------SLCDRVIVVDVSPQLQLERLMQRD------------------------------- 145 (188)
T ss_pred CEEEEEchHhhhC--CcH-------HhCCEEEEEECCHHHHHHHHHHcC-------------------------------
Confidence 4788788875442 111 247899999999999999999874
Q ss_pred CCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCCEEEEeCCCChHHHHHHHH
Q 030234 127 RKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQ 176 (181)
Q Consensus 127 r~dd~~~~i~~Rl~~y~~~~~~l~~~y~~~~~l~~Ida~~~~~~v~~~i~ 176 (181)
..+.+.+.+|+.... +..+.- . .--+.|+.+++++++..++.
T Consensus 146 --~~s~~~~~~r~~~q~----~~~~~~-~-~ad~vI~N~~~~e~l~~~~~ 187 (188)
T TIGR00152 146 --NLTEEEVQKRLASQM----DIEERL-A-RADDVIDNSATLADLVKQLE 187 (188)
T ss_pred --CCCHHHHHHHHHhcC----CHHHHH-H-hCCEEEECCCCHHHHHHHHh
Confidence 124567888887642 111111 1 12357788899999988875
No 70
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=94.06 E-value=0.44 Score=35.66 Aligned_cols=21 Identities=10% Similarity=-0.108 Sum_probs=18.2
Q ss_pred cEEEEeecChHHHHHHHhCCC
Q 030234 75 DKVLNFAIDDAVLEERITGRW 95 (181)
Q Consensus 75 ~~vi~L~~~~~~~~~Rl~~r~ 95 (181)
+.+|+|++|.+++.+|+..+.
T Consensus 98 ~~vv~L~~~~e~~~~Ri~~~~ 118 (172)
T PRK05057 98 GVVVYLETTIEKQLARTQRDK 118 (172)
T ss_pred CEEEEEeCCHHHHHHHHhCCC
Confidence 479999999999999997543
No 71
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=93.73 E-value=0.51 Score=35.61 Aligned_cols=68 Identities=22% Similarity=0.299 Sum_probs=46.3
Q ss_pred EEEEeecChHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCCCcccCCCC---cHHHHHHHHHHHHHhcHHHHHH
Q 030234 76 KVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDD---TAAVLKSRLEAFHKQTEPVIDY 152 (181)
Q Consensus 76 ~vi~L~~~~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~~r~dd---~~~~i~~Rl~~y~~~~~~l~~~ 152 (181)
.||+|++|-+++.+|+.....- +|.+-.+. -.+.+..|...|.+.
T Consensus 97 ~vv~L~~~~e~l~~Rl~~~~~R-------------------------Pll~~~~~~~~l~~L~~~R~~~Y~e~------- 144 (172)
T COG0703 97 IVVYLDAPFETLYERLQRDRKR-------------------------PLLQTEDPREELEELLEERQPLYREV------- 144 (172)
T ss_pred eEEEEeCCHHHHHHHhccccCC-------------------------CcccCCChHHHHHHHHHHHHHHHHHh-------
Confidence 7999999999999999844321 22222232 134566666666554
Q ss_pred HhhcCCEEEEeCCCChHHHHHHHHHHhc
Q 030234 153 YSKKGIVAQLHAEKPPQEVTSEVQKALS 180 (181)
Q Consensus 153 y~~~~~l~~Ida~~~~~~v~~~i~~~l~ 180 (181)
-.+.++++...+++..+|.+.|.
T Consensus 145 -----a~~~~~~~~~~~~v~~~i~~~l~ 167 (172)
T COG0703 145 -----ADFIIDTDDRSEEVVEEILEALE 167 (172)
T ss_pred -----CcEEecCCCCcHHHHHHHHHHHH
Confidence 24678888777999999988774
No 72
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=93.33 E-value=0.38 Score=35.67 Aligned_cols=70 Identities=16% Similarity=0.155 Sum_probs=46.3
Q ss_pred CccEEEEeecChHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHHhcHHHHHH
Q 030234 73 KVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDY 152 (181)
Q Consensus 73 ~p~~vi~L~~~~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~~r~dd~~~~i~~Rl~~y~~~~~~l~~~ 152 (181)
.|-.+|+|++|.+++.+|+..|.-+. .+.+.+...+..|. |.
T Consensus 90 ~~~~~v~l~a~~~~l~~Rl~~R~~~~-------------------------------a~~~vl~~Q~~~~e----p~--- 131 (163)
T PRK11545 90 PNLSFIYLKGDFDVIESRLKARKGHF-------------------------------FKTQMLVTQFETLQ----EP--- 131 (163)
T ss_pred CCEEEEEEECCHHHHHHHHHhccCCC-------------------------------CCHHHHHHHHHHcC----CC---
Confidence 45579999999999999999985210 12344444443331 11
Q ss_pred HhhcCCEEEEeCCCChHHHHHHHHHHhc
Q 030234 153 YSKKGIVAQLHAEKPPQEVTSEVQKALS 180 (181)
Q Consensus 153 y~~~~~l~~Ida~~~~~~v~~~i~~~l~ 180 (181)
-.....++.||++.+++++..++...|.
T Consensus 132 ~~~e~~~~~id~~~~~~~~~~~~~~~~~ 159 (163)
T PRK11545 132 GADETDVLVVDIDQPLEGVVASTIEVIK 159 (163)
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHH
Confidence 0011247899999999999998887763
No 73
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=93.32 E-value=0.53 Score=36.70 Aligned_cols=23 Identities=22% Similarity=0.213 Sum_probs=21.8
Q ss_pred CccEEEEeecChHHHHHHHhCCC
Q 030234 73 KVDKVLNFAIDDAVLEERITGRW 95 (181)
Q Consensus 73 ~p~~vi~L~~~~~~~~~Rl~~r~ 95 (181)
.||++|+|+|+-+++.+|+..|.
T Consensus 126 ~PdllIyLd~~~e~~l~RI~~Rg 148 (216)
T COG1428 126 RPDLLIYLDASLETLLRRIAKRG 148 (216)
T ss_pred CCCEEEEEeCCHHHHHHHHHHhC
Confidence 89999999999999999999884
No 74
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=92.77 E-value=2.6 Score=31.18 Aligned_cols=68 Identities=18% Similarity=0.231 Sum_probs=44.6
Q ss_pred ccEEEEeecChHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHHhcHHHHHHH
Q 030234 74 VDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYY 153 (181)
Q Consensus 74 p~~vi~L~~~~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~~r~dd~~~~i~~Rl~~y~~~~~~l~~~y 153 (181)
+..++++..+++.+.+|+..|. +++.+.+++|+..+...... ..+|
T Consensus 113 ~~~i~~~~~~~e~~~~Rl~~r~---------------------------------~~~~~~i~~rl~~~~~~~~~-~~~~ 158 (180)
T TIGR03263 113 AVSIFILPPSLEELERRLRKRG---------------------------------TDSEEVIERRLAKAKKEIAH-ADEF 158 (180)
T ss_pred cEEEEEECCCHHHHHHHHHHcC---------------------------------CCCHHHHHHHHHHHHHHHhc-cccC
Confidence 4345555666788888887553 34677899999887644321 1122
Q ss_pred hhcCCEEEEeCCCChHHHHHHHHHHhcC
Q 030234 154 SKKGIVAQLHAEKPPQEVTSEVQKALSA 181 (181)
Q Consensus 154 ~~~~~l~~Ida~~~~~~v~~~i~~~l~~ 181 (181)
-++.++ + +.++.++++...+.|
T Consensus 159 ----d~~i~n-~-~~~~~~~~l~~~~~~ 180 (180)
T TIGR03263 159 ----DYVIVN-D-DLEKAVEELKSIILA 180 (180)
T ss_pred ----cEEEEC-C-CHHHHHHHHHHHHhC
Confidence 244455 3 789999999998865
No 75
>PRK14737 gmk guanylate kinase; Provisional
Probab=92.67 E-value=1.7 Score=33.01 Aligned_cols=87 Identities=10% Similarity=0.085 Sum_probs=53.0
Q ss_pred CCeEecCCCCCHHHHHHHHHHHHhcCCCcc--EEEEeecCh-HHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCC
Q 030234 46 KGFILDGFPRTEVQAQKLDEMLEKQGKKVD--KVLNFAIDD-AVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGE 122 (181)
Q Consensus 46 ~G~iLdGfPrt~~Qa~~l~~~l~~~~~~p~--~vi~L~~~~-~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~ 122 (181)
+-.|+|-=|....|++.. .|+ .+|++..|+ +.+.+|+..|.
T Consensus 95 ~~~i~d~~~~g~~~l~~~---------~~~~~~~Ifi~pps~e~l~~RL~~R~--------------------------- 138 (186)
T PRK14737 95 RSAIMDIDVQGAKIIKEK---------FPERIVTIFIEPPSEEEWEERLIHRG--------------------------- 138 (186)
T ss_pred CeEEEEcCHHHHHHHHHh---------CCCCeEEEEEECCCHHHHHHHHHhcC---------------------------
Confidence 345677655555554421 344 577787754 77778877653
Q ss_pred CcccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCCEEEEeCCCChHHHHHHHHHHhcC
Q 030234 123 PLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALSA 181 (181)
Q Consensus 123 ~l~~r~dd~~~~i~~Rl~~y~~~~~~l~~~y~~~~~l~~Ida~~~~~~v~~~i~~~l~~ 181 (181)
+++++.+++||........ +...--++.+| + +.++.+.++.++|.+
T Consensus 139 ------~~s~e~i~~Rl~~~~~e~~-----~~~~~D~vI~N-~-dle~a~~ql~~ii~~ 184 (186)
T PRK14737 139 ------TDSEESIEKRIENGIIELD-----EANEFDYKIIN-D-DLEDAIADLEAIICG 184 (186)
T ss_pred ------CCCHHHHHHHHHHHHHHHh-----hhccCCEEEEC-c-CHHHHHHHHHHHHhc
Confidence 3456789999996443221 11111244444 4 889999999988753
No 76
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=92.34 E-value=2 Score=31.32 Aligned_cols=40 Identities=18% Similarity=0.117 Sum_probs=29.0
Q ss_pred CCCeEecCCCCCHHHHHHHHHHHHhcCCCccEEEEeecChHHHHHHHhCCC
Q 030234 45 QKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 95 (181)
Q Consensus 45 ~~G~iLdGfPrt~~Qa~~l~~~l~~~~~~p~~vi~L~~~~~~~~~Rl~~r~ 95 (181)
..+||+||.=... + + ...++++|++.+|.++..+|+..|.
T Consensus 74 ~~~~Vi~g~~~~~-----~---~---~~~~d~~v~v~a~~~~r~~R~~~R~ 113 (171)
T TIGR02173 74 EKNVVLESRLAGW-----I---V---REYADVKIWLKAPLEVRARRIAKRE 113 (171)
T ss_pred CCCEEEEecccce-----e---e---cCCcCEEEEEECCHHHHHHHHHHcc
Confidence 3579999953211 1 1 1247899999999999999998874
No 77
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=92.20 E-value=2.4 Score=30.30 Aligned_cols=22 Identities=18% Similarity=0.068 Sum_probs=19.2
Q ss_pred ccEEEEeecChHHHHHHHhCCC
Q 030234 74 VDKVLNFAIDDAVLEERITGRW 95 (181)
Q Consensus 74 p~~vi~L~~~~~~~~~Rl~~r~ 95 (181)
...+|+|++|.+++.+|+..|.
T Consensus 92 ~~~~i~l~~~~e~~~~R~~~r~ 113 (154)
T cd00464 92 NGIVVWLDASPEELLERLARDK 113 (154)
T ss_pred CCeEEEEeCCHHHHHHHhccCC
Confidence 4579999999999999998764
No 78
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=91.94 E-value=1.8 Score=33.21 Aligned_cols=69 Identities=12% Similarity=0.088 Sum_probs=48.6
Q ss_pred CccEEEEeecChHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHHhcHHHHHH
Q 030234 73 KVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDY 152 (181)
Q Consensus 73 ~p~~vi~L~~~~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~~r~dd~~~~i~~Rl~~y~~~~~~l~~~ 152 (181)
..|.+|++++|.++.++|+..|. .-+.+.+.+|+.. +. ++.+.
T Consensus 121 ~~D~vi~V~a~~e~r~~RL~~R~---------------------------------g~s~e~a~~ri~~--Q~--~~~~k 163 (196)
T PRK14732 121 LCDATVTVDSDPEESILRTISRD---------------------------------GMKKEDVLARIAS--QL--PITEK 163 (196)
T ss_pred hCCEEEEEECCHHHHHHHHHHcC---------------------------------CCCHHHHHHHHHH--cC--CHHHH
Confidence 46899999999999999998773 1245778888865 22 33332
Q ss_pred HhhcCCEEEEeCCCChHHHHHHHHHHhc
Q 030234 153 YSKKGIVAQLHAEKPPQEVTSEVQKALS 180 (181)
Q Consensus 153 y~~~~~l~~Ida~~~~~~v~~~i~~~l~ 180 (181)
-... . +.|+-+++.+++..++.++++
T Consensus 164 ~~~a-D-~vI~N~~~~~~l~~~v~~l~~ 189 (196)
T PRK14732 164 LKRA-D-YIVRNDGNREGLKEECKILYS 189 (196)
T ss_pred HHhC-C-EEEECCCCHHHHHHHHHHHHH
Confidence 2221 2 467778899999999987653
No 79
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=91.42 E-value=6.9 Score=31.98 Aligned_cols=67 Identities=16% Similarity=0.181 Sum_probs=35.5
Q ss_pred CCHHHHHHHHHHHHcC-CCCCCCeEecCCCCCH-HHHHHHHHHHHhcCCCccEEEEeecChHHHHHHHhC
Q 030234 26 VSDDLVVGIIDEAMKK-PSCQKGFILDGFPRTE-VQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITG 93 (181)
Q Consensus 26 vpd~~v~~ll~~~l~~-~~~~~G~iLdGfPrt~-~Qa~~l~~~l~~~~~~p~~vi~L~~~~~~~~~Rl~~ 93 (181)
+|-+++.+++..-... ....--+++|---+.. .+....-..|...|.. -.+|+|+++.+++.+|+..
T Consensus 37 ~~~~L~~~l~~~~~~~~~~~~~av~iD~r~~~~~~~~~~~~~~L~~~g~~-~~iI~L~a~~e~L~~Rl~~ 105 (288)
T PRK05416 37 LPPSLLPKLVELLAQSGGIRKVAVVIDVRSRPFFDDLPEALDELRERGID-VRVLFLDASDEVLIRRYSE 105 (288)
T ss_pred cCHHHHHHHHHHHHhcCCCCCeEEEEccCchhhHHHHHHHHHHHHHcCCc-EEEEEEECCHHHHHHHHhh
Confidence 4555555554433222 1122346666643221 1222222234444443 3679999999999999975
No 80
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=91.18 E-value=2.1 Score=32.81 Aligned_cols=47 Identities=17% Similarity=0.256 Sum_probs=33.4
Q ss_pred CCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCCEEEEeCCCChHHHHHHHHHHhc
Q 030234 127 RKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 180 (181)
Q Consensus 127 r~dd~~~~i~~Rl~~y~~~~~~l~~~y~~~~~l~~Ida~~~~~~v~~~i~~~l~ 180 (181)
|..|+++.|.+||...+..+....+ | ..+.|| .+.+..+..+.+++.
T Consensus 135 Rgtds~e~I~~Rl~~a~~Ei~~~~~-f----dyvivN--dd~e~a~~~l~~ii~ 181 (191)
T COG0194 135 RGTDSEEVIARRLENAKKEISHADE-F----DYVIVN--DDLEKALEELKSIIL 181 (191)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHh-C----CEEEEC--ccHHHHHHHHHHHHH
Confidence 4568899999999999888765554 3 234443 466777777777664
No 81
>PRK13946 shikimate kinase; Provisional
Probab=91.09 E-value=3.6 Score=30.87 Aligned_cols=72 Identities=22% Similarity=0.266 Sum_probs=43.2
Q ss_pred cEEEEeecChHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHHhcHHHHHHHh
Q 030234 75 DKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYS 154 (181)
Q Consensus 75 ~~vi~L~~~~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~~r~dd~~~~i~~Rl~~y~~~~~~l~~~y~ 154 (181)
.++|+|++|.+++.+|+..|...|. .. ..+..+.+++.... -..+|.
T Consensus 104 ~~~v~L~a~~e~~~~Rl~~r~~rp~-------------------------~~-~~~~~~~i~~~~~~-------R~~~y~ 150 (184)
T PRK13946 104 GISVWLKADLDVLWERVSRRDTRPL-------------------------LR-TADPKETLARLMEE-------RYPVYA 150 (184)
T ss_pred CEEEEEECCHHHHHHHhcCCCCCCc-------------------------CC-CCChHHHHHHHHHH-------HHHHHH
Confidence 4689999999999999987642111 10 01112222222221 112454
Q ss_pred hcCCEEEEeCCCChHHHHHHHHHHhc
Q 030234 155 KKGIVAQLHAEKPPQEVTSEVQKALS 180 (181)
Q Consensus 155 ~~~~l~~Ida~~~~~~v~~~i~~~l~ 180 (181)
.. .+.......+++++.+.|.+.|.
T Consensus 151 ~~-dl~i~~~~~~~~~~~~~i~~~i~ 175 (184)
T PRK13946 151 EA-DLTVASRDVPKEVMADEVIEALA 175 (184)
T ss_pred hC-CEEEECCCCCHHHHHHHHHHHHH
Confidence 32 35556788899999999988764
No 82
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=90.91 E-value=2.4 Score=32.43 Aligned_cols=69 Identities=16% Similarity=0.119 Sum_probs=47.8
Q ss_pred CccEEEEeecChHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHHhcHHHHHH
Q 030234 73 KVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDY 152 (181)
Q Consensus 73 ~p~~vi~L~~~~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~~r~dd~~~~i~~Rl~~y~~~~~~l~~~ 152 (181)
..|.+|++++|.++.++|+..|. | -+.+.+.+|+... + ++...
T Consensus 125 ~~D~ii~V~a~~e~r~~Rl~~R~-----g----------------------------~s~e~~~~ri~~Q---~-~~~~k 167 (195)
T PRK14730 125 LCSEIWVVDCSPEQQLQRLIKRD-----G----------------------------LTEEEAEARINAQ---W-PLEEK 167 (195)
T ss_pred CCCEEEEEECCHHHHHHHHHHcC-----C----------------------------CCHHHHHHHHHhC---C-CHHHH
Confidence 46899999999999999998773 1 2346677777642 2 22221
Q ss_pred HhhcCCEEEEeCCCChHHHHHHHHHHhc
Q 030234 153 YSKKGIVAQLHAEKPPQEVTSEVQKALS 180 (181)
Q Consensus 153 y~~~~~l~~Ida~~~~~~v~~~i~~~l~ 180 (181)
- .. -=+.|+-+++.+++.+++.+++.
T Consensus 168 ~-~~-aD~vI~N~g~~e~l~~qv~~~l~ 193 (195)
T PRK14730 168 V-KL-ADVVLDNSGDLEKLYQQVDQLLK 193 (195)
T ss_pred H-hh-CCEEEECCCCHHHHHHHHHHHHh
Confidence 1 11 12477888899999999988764
No 83
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=90.56 E-value=2.4 Score=33.77 Aligned_cols=68 Identities=12% Similarity=0.077 Sum_probs=46.6
Q ss_pred CccEEEEeecChHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHHhcHHHHHH
Q 030234 73 KVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDY 152 (181)
Q Consensus 73 ~p~~vi~L~~~~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~~r~dd~~~~i~~Rl~~y~~~~~~l~~~ 152 (181)
..|.+|++.+|.++.++|+..|. .-+.+.+.+|+.. +.. . ..
T Consensus 136 ~~D~iv~V~a~~e~ri~RL~~R~---------------------------------g~s~eea~~Ri~~---Q~~-~-~e 177 (244)
T PTZ00451 136 FVSASVVVSCSEERQIERLRKRN---------------------------------GFSKEEALQRIGS---QMP-L-EE 177 (244)
T ss_pred cCCeEEEEECCHHHHHHHHHHcC---------------------------------CCCHHHHHHHHHh---CCC-H-HH
Confidence 35899999999999999998763 2345778888865 221 1 12
Q ss_pred HhhcCCEEEEeCC--CChHHHHHHHHHHh
Q 030234 153 YSKKGIVAQLHAE--KPPQEVTSEVQKAL 179 (181)
Q Consensus 153 y~~~~~l~~Ida~--~~~~~v~~~i~~~l 179 (181)
....-.+ .|+-+ ++++++..++.+.+
T Consensus 178 k~~~aD~-VI~N~~~g~~~~L~~~v~~~~ 205 (244)
T PTZ00451 178 KRRLADY-IIENDSADDLDELRGSVCDCV 205 (244)
T ss_pred HHHhCCE-EEECCCCCCHHHHHHHHHHHH
Confidence 2222233 45556 89999999998765
No 84
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=90.49 E-value=3 Score=30.49 Aligned_cols=36 Identities=25% Similarity=0.273 Sum_probs=25.3
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCccEEEEeecChHHHHHHHhCCC
Q 030234 52 GFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 95 (181)
Q Consensus 52 GfPrt~~Qa~~l~~~l~~~~~~p~~vi~L~~~~~~~~~Rl~~r~ 95 (181)
|.+-+.+..+.|. .--.||+|+.+.+.+.+|+..+.
T Consensus 71 G~~~~~~~~~~L~--------~~g~vI~L~~~~~~l~~Rl~~~~ 106 (158)
T PF01202_consen 71 GIVLKEENRELLK--------ENGLVIYLDADPEELAERLRARD 106 (158)
T ss_dssp TGGGSHHHHHHHH--------HHSEEEEEE--HHHHHHHHHHHC
T ss_pred CCcCcHHHHHHHH--------hCCEEEEEeCCHHHHHHHHhCCC
Confidence 4677777666554 23469999999999999997654
No 85
>PLN02422 dephospho-CoA kinase
Probab=89.91 E-value=2.9 Score=33.05 Aligned_cols=23 Identities=22% Similarity=0.134 Sum_probs=20.8
Q ss_pred CccEEEEeecChHHHHHHHhCCC
Q 030234 73 KVDKVLNFAIDDAVLEERITGRW 95 (181)
Q Consensus 73 ~p~~vi~L~~~~~~~~~Rl~~r~ 95 (181)
..|.||++++|.++.++|+..|.
T Consensus 125 ~~D~vI~V~a~~e~ri~RL~~R~ 147 (232)
T PLN02422 125 WTKPVVVVWVDPETQLERLMARD 147 (232)
T ss_pred hCCEEEEEECCHHHHHHHHHHcC
Confidence 47899999999999999999874
No 86
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=89.30 E-value=1.6 Score=32.27 Aligned_cols=118 Identities=21% Similarity=0.295 Sum_probs=66.9
Q ss_pred HHHHCCCCCCHHH---HHHHHHHHHcCC-CCC-CCeEecCCCCCHHHHHHHHHHHHhcCCCccEEEEeecChHHHHHHHh
Q 030234 18 EAMDKGELVSDDL---VVGIIDEAMKKP-SCQ-KGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERIT 92 (181)
Q Consensus 18 ~~l~~G~~vpd~~---v~~ll~~~l~~~-~~~-~G~iLdGfPrt~~Qa~~l~~~l~~~~~~p~~vi~L~~~~~~~~~Rl~ 92 (181)
..|.+|.++.|+- ..+.|..++.+. ... .++|. ..--..+. -+.|.+.... -.+|+|+.+.+.+.+|+.
T Consensus 36 ~KM~~GiPL~DdDR~pWL~~l~~~~~~~~~~~~~~vi~--CSALKr~Y---RD~LR~~~~~-~~Fv~L~g~~~~i~~Rm~ 109 (161)
T COG3265 36 EKMSAGIPLNDDDRWPWLEALGDAAASLAQKNKHVVIA--CSALKRSY---RDLLREANPG-LRFVYLDGDFDLILERMK 109 (161)
T ss_pred HHHhCCCCCCcchhhHHHHHHHHHHHHhhcCCCceEEe--cHHHHHHH---HHHHhccCCC-eEEEEecCCHHHHHHHHH
Confidence 3488899888876 334445555432 222 23333 12212222 2334332222 368999999999999999
Q ss_pred CCCcCCCCCCccccCCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCCEEEEeCCCChHHHH
Q 030234 93 GRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVT 172 (181)
Q Consensus 93 ~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~~r~dd~~~~i~~Rl~~y~~~~~~l~~~y~~~~~l~~Ida~~~~~~v~ 172 (181)
.|. | .|+|+. .++..+. ..-.|- .+ ..++.||.++++++|.
T Consensus 110 ~R~-----g-----HFM~~~---------------------ll~SQfa---~LE~P~----~d-e~vi~idi~~~~e~vv 150 (161)
T COG3265 110 ARK-----G-----HFMPAS---------------------LLDSQFA---TLEEPG----AD-EDVLTIDIDQPPEEVV 150 (161)
T ss_pred hcc-----c-----CCCCHH---------------------HHHHHHH---HhcCCC----CC-CCEEEeeCCCCHHHHH
Confidence 885 2 244431 1211111 111110 01 1488999999999999
Q ss_pred HHHHHHhc
Q 030234 173 SEVQKALS 180 (181)
Q Consensus 173 ~~i~~~l~ 180 (181)
+++.+.|.
T Consensus 151 ~~~~~~l~ 158 (161)
T COG3265 151 AQALAWLK 158 (161)
T ss_pred HHHHHHHh
Confidence 99988775
No 87
>PRK04182 cytidylate kinase; Provisional
Probab=89.12 E-value=5.8 Score=29.04 Aligned_cols=22 Identities=27% Similarity=0.154 Sum_probs=20.1
Q ss_pred ccEEEEeecChHHHHHHHhCCC
Q 030234 74 VDKVLNFAIDDAVLEERITGRW 95 (181)
Q Consensus 74 p~~vi~L~~~~~~~~~Rl~~r~ 95 (181)
++++|+|++|.+++.+|+..|.
T Consensus 92 ~~~~V~l~a~~e~~~~Rl~~r~ 113 (180)
T PRK04182 92 ADLKIWLKAPLEVRAERIAERE 113 (180)
T ss_pred CCEEEEEECCHHHHHHHHHhcc
Confidence 7899999999999999998774
No 88
>PHA03132 thymidine kinase; Provisional
Probab=89.06 E-value=4.3 Score=36.46 Aligned_cols=50 Identities=12% Similarity=0.112 Sum_probs=34.1
Q ss_pred CCeEecCCCCC-HH-HHH-----------HHHHHHHhcC-CCccEEEEeecChHHHHHHHhCCC
Q 030234 46 KGFILDGFPRT-EV-QAQ-----------KLDEMLEKQG-KKVDKVLNFAIDDAVLEERITGRW 95 (181)
Q Consensus 46 ~G~iLdGfPrt-~~-Qa~-----------~l~~~l~~~~-~~p~~vi~L~~~~~~~~~Rl~~r~ 95 (181)
.-+|.|-|+-+ .. ++. .+..++.... ..||++|+|+++.+++.+|+.+|.
T Consensus 360 ~iVI~DRyi~Ss~avF~~~~y~~G~ls~~e~~~lL~~~~~~~PDLiIyLdv~pe~alkRIkkRg 423 (580)
T PHA03132 360 NWVLFDRHLLSATVVFPLMHLRNGMLSFSHFIQLLSTFRAHEGDVIVLLKLNSEENLRRVKKRG 423 (580)
T ss_pred CEEEEecCccccHHHHHHhccccccCCHHHHHHHHHHhcccCCCEEEEEeCCHHHHHHHHHhcC
Confidence 45799999964 33 211 1122333322 359999999999999999998874
No 89
>KOG4235 consensus Mitochondrial thymidine kinase 2/deoxyguanosine kinase [Nucleotide transport and metabolism]
Probab=88.72 E-value=3.3 Score=32.21 Aligned_cols=29 Identities=14% Similarity=0.076 Sum_probs=24.8
Q ss_pred HhcCCCccEEEEeecChHHHHHHHhCCCc
Q 030234 68 EKQGKKVDKVLNFAIDDAVLEERITGRWI 96 (181)
Q Consensus 68 ~~~~~~p~~vi~L~~~~~~~~~Rl~~r~~ 96 (181)
.+..+.+|.+|+|..+.++|.+|+..|.-
T Consensus 148 ~~~~v~~dgiIYLrasPetc~~Ri~~R~R 176 (244)
T KOG4235|consen 148 RSMDVSLDGIIYLRASPETCYKRIYLRAR 176 (244)
T ss_pred hccccccceEEEeecChHHHHHHHHHHhh
Confidence 34447899999999999999999988864
No 90
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=88.56 E-value=1.1 Score=31.74 Aligned_cols=39 Identities=15% Similarity=0.190 Sum_probs=28.3
Q ss_pred CCCeEecCCCCCHHHHHHHHHHHHhcCCCccEEEEeecChHHHHHHHhCC
Q 030234 45 QKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGR 94 (181)
Q Consensus 45 ~~G~iLdGfPrt~~Qa~~l~~~l~~~~~~p~~vi~L~~~~~~~~~Rl~~r 94 (181)
..+||+||--... . + ....+.+|+|++|.+...+|+..|
T Consensus 65 ~~~~Vidg~~~~~--~--~-------~~~~~~~i~l~~~~~~r~~R~~~r 103 (147)
T cd02020 65 KPGIVLEGRDIGT--V--V-------FPDADLKIFLTASPEVRAKRRAKQ 103 (147)
T ss_pred CCCEEEEeeeeee--E--E-------cCCCCEEEEEECCHHHHHHHHHHH
Confidence 3579999964311 0 0 023679999999999999999875
No 91
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=88.50 E-value=12 Score=30.51 Aligned_cols=117 Identities=20% Similarity=0.261 Sum_probs=66.5
Q ss_pred CCCHHHHHHHHHHHHcCCCCCC--CeEecCCCCCHHHHHHHHH---HHHhcCCCccEEEEeecChHHHHHHHh-CCCcCC
Q 030234 25 LVSDDLVVGIIDEAMKKPSCQK--GFILDGFPRTEVQAQKLDE---MLEKQGKKVDKVLNFAIDDAVLEERIT-GRWIHP 98 (181)
Q Consensus 25 ~vpd~~v~~ll~~~l~~~~~~~--G~iLdGfPrt~~Qa~~l~~---~l~~~~~~p~~vi~L~~~~~~~~~Rl~-~r~~~~ 98 (181)
.+|-.++.+++..--......+ -+++|- |+..-...+.+ .+.+.++.+ .+|+|+++++++++|.+ .||.+|
T Consensus 31 NlP~~Ll~~l~~~~~~~~~~~~~~Ai~iD~--R~~~~~~~~~~~~~~l~~~~~~~-~ilFLdA~d~~LirRy~eTRR~HP 107 (284)
T PF03668_consen 31 NLPPSLLPQLIELLAQSNSKIEKVAIVIDI--RSREFFEDLFEALDELRKKGIDV-RILFLDASDEVLIRRYSETRRRHP 107 (284)
T ss_pred CCcHHHHHHHHHHHHhcCCCCceEEEEEeC--CChHHHHHHHHHHHHHHhcCCce-EEEEEECChHHHHHHHHhccCCCC
Confidence 3888999988865443222222 356663 33222222221 223345554 59999999999999996 577777
Q ss_pred CCCCccccCCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCCEEEEeC-CCChHHHHHHHHH
Q 030234 99 SSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHA-EKPPQEVTSEVQK 177 (181)
Q Consensus 99 ~tg~~y~~~~~pp~~~~~~~~~~~~l~~r~dd~~~~i~~Rl~~y~~~~~~l~~~y~~~~~l~~Ida-~~~~~~v~~~i~~ 177 (181)
..+. ....+. ++.-++...|+.+.-. +.||. +-++.++-+.|.+
T Consensus 108 L~~~--------------------------~~~le~----I~~Er~~L~~lr~~Ad-----~vIDTs~l~~~~Lr~~i~~ 152 (284)
T PF03668_consen 108 LSSD--------------------------GSLLEA----IEKERELLEPLRERAD-----LVIDTSNLSVHQLRERIRE 152 (284)
T ss_pred CCCC--------------------------CCcHHH----HHHHHHHHHHHHHhCC-----EEEECCCCCHHHHHHHHHH
Confidence 6421 112223 3344555666665542 46774 4466677766665
Q ss_pred Hh
Q 030234 178 AL 179 (181)
Q Consensus 178 ~l 179 (181)
.+
T Consensus 153 ~~ 154 (284)
T PF03668_consen 153 RF 154 (284)
T ss_pred Hh
Confidence 54
No 92
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=88.36 E-value=5.2 Score=30.97 Aligned_cols=69 Identities=12% Similarity=0.104 Sum_probs=47.2
Q ss_pred CccEEEEeecChHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHHhcHHHHHH
Q 030234 73 KVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDY 152 (181)
Q Consensus 73 ~p~~vi~L~~~~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~~r~dd~~~~i~~Rl~~y~~~~~~l~~~ 152 (181)
..|.||++.+|.++-++|+..|. .-+.+.+.+|+.. +.-..-..-
T Consensus 128 ~~D~vi~V~a~~e~ri~Rl~~Rd---------------------------------~~s~~~a~~ri~~--Q~~~eek~~ 172 (204)
T PRK14733 128 YLKKVIVIKADLETRIRRLMERD---------------------------------GKNRQQAVAFINL--QISDKEREK 172 (204)
T ss_pred hCCEEEEEECCHHHHHHHHHHcC---------------------------------CCCHHHHHHHHHh--CCCHHHHHH
Confidence 46889999999999999998764 1245667777753 222222222
Q ss_pred HhhcCCEEEEeCCC-ChHHHHHHHHHHhc
Q 030234 153 YSKKGIVAQLHAEK-PPQEVTSEVQKALS 180 (181)
Q Consensus 153 y~~~~~l~~Ida~~-~~~~v~~~i~~~l~ 180 (181)
+.+ +.||-++ +.+++..++.++++
T Consensus 173 ~aD----~VI~N~g~~~~~l~~~~~~~~~ 197 (204)
T PRK14733 173 IAD----FVIDNTELTDQELESKLITTIN 197 (204)
T ss_pred hCC----EEEECcCCCHHHHHHHHHHHHH
Confidence 322 5677777 89999988887664
No 93
>TIGR03707 PPK2_P_aer polyphosphate kinase 2, PA0141 family. Members of this protein family are designated polyphosphate kinase 2 (PPK2) after the characterized protein in Pseudomonas aeruginosa. This family comprises one of three well-separated clades in the larger family described by Pfam model pfam03976. PA0141 from this family has been shown capable of operating in reverse, with GDP preferred (over ADP) as a substrate, producing GTP (or ATP) by transfer of a phosphate residue from polyphosphate. Most species with a member of this family also encode a polyphosphate kinase 1 (PPK1).
Probab=86.76 E-value=12 Score=29.49 Aligned_cols=90 Identities=9% Similarity=0.115 Sum_probs=59.0
Q ss_pred CCCHHHHHHHHHHHHhcCCCccEEEEeecChHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCCCcccCCCCcHH
Q 030234 54 PRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAA 133 (181)
Q Consensus 54 Prt~~Qa~~l~~~l~~~~~~p~~vi~L~~~~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~~r~dd~~~ 133 (181)
.+-.++...||.+|...|..+ +=++|.++.++-.+|+..|.-+|.+.= +.....-
T Consensus 117 ~~~~~~I~~FEr~L~~~G~~I-lKfflhIsk~eQ~kRl~~r~~~p~k~W------------------------k~~~~D~ 171 (230)
T TIGR03707 117 EEFLRQVPEFERMLVRDGIHL-FKYWLSVSREEQLRRFKARIDDPLKQW------------------------KLSPMDL 171 (230)
T ss_pred HHHHHHHHHHHHHHHHCCCEE-EEEEEECCHHHHHHHHHHHhcCCcccc------------------------cCCHHHH
Confidence 334557788888888777654 678999999999999999987765421 1111111
Q ss_pred HHHHHHHHHHHhcHHHHHHHhh-cCCEEEEeCCCCh
Q 030234 134 VLKSRLEAFHKQTEPVIDYYSK-KGIVAQLHAEKPP 168 (181)
Q Consensus 134 ~i~~Rl~~y~~~~~~l~~~y~~-~~~l~~Ida~~~~ 168 (181)
.-.++...|.+....+++.=.. .-.++.|+|+..-
T Consensus 172 ~~~~~yd~y~~a~e~~l~~T~t~~APW~iI~a~dk~ 207 (230)
T TIGR03707 172 ASLDRWDDYSRAKDEMFARTDTPEAPWTVVRSDDKK 207 (230)
T ss_pred HHHHhHHHHHHHHHHHHHhcCCCCCCeEEEcCCCHH
Confidence 2334456666666655554332 2479999999754
No 94
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=86.67 E-value=16 Score=29.70 Aligned_cols=117 Identities=19% Similarity=0.260 Sum_probs=68.4
Q ss_pred CCCHHHHHHHHHHHHcC-C-CCCCCeEecCCCCCHHHHHHHHHHH---HhcC-CCccEEEEeecChHHHHHHHh-CCCcC
Q 030234 25 LVSDDLVVGIIDEAMKK-P-SCQKGFILDGFPRTEVQAQKLDEML---EKQG-KKVDKVLNFAIDDAVLEERIT-GRWIH 97 (181)
Q Consensus 25 ~vpd~~v~~ll~~~l~~-~-~~~~G~iLdGfPrt~~Qa~~l~~~l---~~~~-~~p~~vi~L~~~~~~~~~Rl~-~r~~~ 97 (181)
.+|.+++-+++.-.... . ..+-.+++| -|+.+....|++.+ .+.+ +.+ -|++|+.++++++.|.+ .||.+
T Consensus 31 NLPp~Llp~~~~~~~~~~~~~~kvAv~iD--iRs~~~~~~l~~~l~~l~~~~~~~~-~iLFLeA~~~~Lv~RY~etRR~H 107 (286)
T COG1660 31 NLPPQLLPKLADLMLTLESRITKVAVVID--VRSREFFGDLEEVLDELKDNGDIDP-RVLFLEADDETLVRRYSETRRSH 107 (286)
T ss_pred CCCHHHHHHHHHHHhhcccCCceEEEEEe--cccchhHHHHHHHHHHHHhcCCCCc-eEEEEECchhHHHHHHhhhhhcC
Confidence 47888888887633311 1 122456777 34445555444443 3342 334 49999999999999995 58888
Q ss_pred CCCCCccccCCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCCEEEEe-CCCChHHHHHHHH
Q 030234 98 PSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLH-AEKPPQEVTSEVQ 176 (181)
Q Consensus 98 ~~tg~~y~~~~~pp~~~~~~~~~~~~l~~r~dd~~~~i~~Rl~~y~~~~~~l~~~y~~~~~l~~Id-a~~~~~~v~~~i~ 176 (181)
|.++.. + +..-+..-++...|+.+.-+ ..|| .+.++.++-+.|.
T Consensus 108 PL~~~~-----------------------~-------l~~~I~~ERelL~pLk~~A~-----~vIDTs~ls~~~Lr~~i~ 152 (286)
T COG1660 108 PLSEDG-----------------------L-------LLEAIAKERELLAPLREIAD-----LVIDTSELSVHELRERIR 152 (286)
T ss_pred CCCccC-----------------------c-------HHHHHHHHHHHHHHHHHHhh-----hEeecccCCHHHHHHHHH
Confidence 876421 1 22223344555666665442 3555 4456667766666
Q ss_pred HHh
Q 030234 177 KAL 179 (181)
Q Consensus 177 ~~l 179 (181)
+.+
T Consensus 153 ~~f 155 (286)
T COG1660 153 TRF 155 (286)
T ss_pred HHH
Confidence 654
No 95
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=86.50 E-value=14 Score=32.94 Aligned_cols=39 Identities=21% Similarity=0.257 Sum_probs=26.3
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCccEEEEeecChHHHHHHHhCC
Q 030234 52 GFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGR 94 (181)
Q Consensus 52 GfPrt~~Qa~~l~~~l~~~~~~p~~vi~L~~~~~~~~~Rl~~r 94 (181)
|.|-+.+....|.+++.+. -.||+|+++.+++.+|+.++
T Consensus 85 G~v~~~~n~~~L~~~~~~~----g~vv~L~~~~~~l~~Rl~~~ 123 (542)
T PRK14021 85 GAPMTPSTQHALASYIAHG----GRVVYLDADPKEAMERANRG 123 (542)
T ss_pred chhCCHHHHHHHHHHHhcC----CEEEEEECCHHHHHHHHhCC
Confidence 3455555555554444332 26999999999999998643
No 96
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=86.40 E-value=4.3 Score=33.34 Aligned_cols=21 Identities=5% Similarity=-0.103 Sum_probs=18.4
Q ss_pred cEEEEeecChHHHHHHHhCCC
Q 030234 75 DKVLNFAIDDAVLEERITGRW 95 (181)
Q Consensus 75 ~~vi~L~~~~~~~~~Rl~~r~ 95 (181)
-++|+|++|.+++++|+..|.
T Consensus 228 ~~~V~L~a~~e~~~~Rl~~r~ 248 (309)
T PRK08154 228 CYTVWLKASPEEHMARVRAQG 248 (309)
T ss_pred CEEEEEECCHHHHHHHHhcCC
Confidence 469999999999999998763
No 97
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=86.13 E-value=9.5 Score=34.23 Aligned_cols=56 Identities=13% Similarity=0.228 Sum_probs=37.1
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHcCC---CCCCC--eEecCCCCCHH--HHHHHHHHH
Q 030234 12 LGIKAKEAMDKGELVSDDLVVGIIDEAMKKP---SCQKG--FILDGFPRTEV--QAQKLDEML 67 (181)
Q Consensus 12 lg~~i~~~l~~G~~vpd~~v~~ll~~~l~~~---~~~~G--~iLdGfPrt~~--Qa~~l~~~l 67 (181)
-|.++++.+.+|...|+.++-.=+.+-|.+. ...+| ++|-|+|-+=. =|+.|...|
T Consensus 354 sgt~ir~~l~~G~~pP~~f~rpeV~~iL~~~~~~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L 416 (568)
T PRK05537 354 SGTELRRRLREGLEIPEWFSFPEVVAELRRTYPPRHKQGFTVFFTGLSGAGKSTIAKALMVKL 416 (568)
T ss_pred CHHHHHHHHHCCCCCChhhcHHHHHHHHHHHhccccCCCeEEEEECCCCChHHHHHHHHHHHh
Confidence 5889999999999999999765444433332 22355 57789999633 344444433
No 98
>TIGR03709 PPK2_rel_1 polyphosphate:nucleotide phosphotransferase, PPK2 family. Members of this protein family belong to the polyphosphate kinase 2 (PPK2) family, which is not related in sequence to PPK1. While PPK1 tends to act in the biosynthesis of polyphosphate, or poly(P), members of the PPK2 family tend to use the terminal phosphate of poly(P) to regenerate ATP or GTP from the corresponding nucleoside diphosphate, or ADP from AMP as is the case with polyphosphate:AMP phosphotransferase (PAP). Members of this protein family most likely transfer the terminal phosphate between poly(P) and some nucleotide, but it is not clear which.
Probab=85.23 E-value=7 Score=31.58 Aligned_cols=101 Identities=13% Similarity=0.132 Sum_probs=65.0
Q ss_pred CCCHHHHHHHHHHHHhcCCCccEEEEeecChHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCCCcccCCCCcHH
Q 030234 54 PRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAA 133 (181)
Q Consensus 54 Prt~~Qa~~l~~~l~~~~~~p~~vi~L~~~~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~~r~dd~~~ 133 (181)
.+-..+...||..|...|..+ +=++|.++.++-.+|+..|.-+|.+. + +-....-
T Consensus 142 ~~~~~~I~~FEr~L~~~G~~I-iKffLhIsk~eQ~kRl~~r~~~p~k~----------------------W--k~s~~D~ 196 (264)
T TIGR03709 142 ERRYEDINDFERYLTENGTTI-LKFFLHISKEEQKKRFLARLDDPTKN----------------------W--KFSPADL 196 (264)
T ss_pred HHHHHHHHHHHHHHHHCCcEE-EEEEEeCCHHHHHHHHHHHhcCCccc----------------------c--cCCHHHH
Confidence 334557788888888777654 67899999999999999998776542 1 1111122
Q ss_pred HHHHHHHHHHHhcHHHHHHHhh-cCCEEEEeCCCChH---HHHHHHHHHh
Q 030234 134 VLKSRLEAFHKQTEPVIDYYSK-KGIVAQLHAEKPPQ---EVTSEVQKAL 179 (181)
Q Consensus 134 ~i~~Rl~~y~~~~~~l~~~y~~-~~~l~~Ida~~~~~---~v~~~i~~~l 179 (181)
.-.++...|.+....++..=.. ...++.|+|+...- .|.+-|.+.|
T Consensus 197 ~~~~~yd~y~~a~e~~l~~T~t~~APW~iI~a~dk~~a~l~v~~~ll~~l 246 (264)
T TIGR03709 197 KERAYWDDYMEAYEDALTATSTKHAPWYVVPADDKWFRRLAVAEILLDAL 246 (264)
T ss_pred HHHHhHHHHHHHHHHHHHhcCCCCCCeEEEcCCCHHHHHHHHHHHHHHHH
Confidence 3345566777766666655332 34799999986643 3444444433
No 99
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=85.05 E-value=3.8 Score=31.67 Aligned_cols=68 Identities=16% Similarity=0.153 Sum_probs=47.9
Q ss_pred ccEEEEeecChHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHHhcHHHHHHH
Q 030234 74 VDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYY 153 (181)
Q Consensus 74 p~~vi~L~~~~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~~r~dd~~~~i~~Rl~~y~~~~~~l~~~y 153 (181)
.|.||.+.+|.++-++|+..|. .++.+.+..|+..-...... +
T Consensus 124 ~d~Vi~V~a~~e~r~eRl~~R~---------------------------------~~~~e~~~~~~~~Q~~~~ek----~ 166 (201)
T COG0237 124 FDKVIVVYAPPEIRLERLMKRD---------------------------------GLDEEDAEARLASQRDLEEK----L 166 (201)
T ss_pred CCEEEEEECCHHHHHHHHHhcC---------------------------------CCCHHHHHHHHHhcCCHHHH----H
Confidence 7899999999999999999773 34556677776644333332 2
Q ss_pred hhcCCEEEEeCCCChHHHHHHHHHHhc
Q 030234 154 SKKGIVAQLHAEKPPQEVTSEVQKALS 180 (181)
Q Consensus 154 ~~~~~l~~Ida~~~~~~v~~~i~~~l~ 180 (181)
.. -=+.+|++.+++...+++...+.
T Consensus 167 ~~--ad~vi~n~~~i~~l~~~i~~~~~ 191 (201)
T COG0237 167 AL--ADVVIDNDGSIENLLEQIEKLLK 191 (201)
T ss_pred hh--cCChhhcCCCHHHHHHHHHHHHH
Confidence 21 12578888999988888877653
No 100
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=84.82 E-value=14 Score=27.36 Aligned_cols=46 Identities=20% Similarity=0.086 Sum_probs=29.1
Q ss_pred CCeEecC-CCCCHHHHHHHHHHHHhcCCCccEEEEeecChHHHHHHHhCCC
Q 030234 46 KGFILDG-FPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 95 (181)
Q Consensus 46 ~G~iLdG-fPrt~~Qa~~l~~~l~~~~~~p~~vi~L~~~~~~~~~Rl~~r~ 95 (181)
..+|+|. |+......+.+..+ .+ .+-..|++.||.+++.+|+..|.
T Consensus 86 ~~VIvD~~~~~~~~~r~~~~~~---~~-~~~~~v~l~~~~~~l~~R~~~R~ 132 (175)
T cd00227 86 ANVIADDVFLGRAALQDCWRSF---VG-LDVLWVGVRCPGEVAEGRETARG 132 (175)
T ss_pred CcEEEeeeccCCHHHHHHHHHh---cC-CCEEEEEEECCHHHHHHHHHhcC
Confidence 5688885 66222211222221 12 34578999999999999999874
No 101
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=84.79 E-value=4.2 Score=30.39 Aligned_cols=45 Identities=20% Similarity=0.300 Sum_probs=28.6
Q ss_pred CCcHHHHHHHHHHHHHhcHHHHHHHhhcCCEEEEeCCCChHHHHHHHHHHhc
Q 030234 129 DDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 180 (181)
Q Consensus 129 dd~~~~i~~Rl~~y~~~~~~l~~~y~~~~~l~~Ida~~~~~~v~~~i~~~l~ 180 (181)
+++.+.+.+|+..+..... +|... -. .|. +.+.++.+.+|.++|+
T Consensus 137 ~~~~~~i~~r~~~~~~~~~----~~~~f-d~-vi~-n~~le~~~~~l~~ii~ 181 (183)
T PF00625_consen 137 DESEEEIEERLERAEKEFE----HYNEF-DY-VIV-NDDLEEAVKELKEIIE 181 (183)
T ss_dssp HCHHHHHHHHHHHHHHHHG----GGGGS-SE-EEE-CSSHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHh----HhhcC-CE-EEE-CcCHHHHHHHHHHHHH
Confidence 3456778888887765333 22221 12 333 3489999999999886
No 102
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=84.03 E-value=8.4 Score=34.13 Aligned_cols=21 Identities=5% Similarity=-0.115 Sum_probs=17.7
Q ss_pred ccEEEEeecChHHHHHHHhCC
Q 030234 74 VDKVLNFAIDDAVLEERITGR 94 (181)
Q Consensus 74 p~~vi~L~~~~~~~~~Rl~~r 94 (181)
-++-|+|+++.++..+|...+
T Consensus 421 AdlKIfL~As~evRa~RR~~~ 441 (512)
T PRK13477 421 AELKIFLTASVEERARRRALD 441 (512)
T ss_pred CCEEEEEECCHHHHHHHHHhh
Confidence 368999999999999987654
No 103
>PRK00625 shikimate kinase; Provisional
Probab=83.83 E-value=16 Score=27.36 Aligned_cols=21 Identities=14% Similarity=0.181 Sum_probs=18.8
Q ss_pred cEEEEeecChHHHHHHHhCCC
Q 030234 75 DKVLNFAIDDAVLEERITGRW 95 (181)
Q Consensus 75 ~~vi~L~~~~~~~~~Rl~~r~ 95 (181)
..||+|++|.+++.+|+..|.
T Consensus 97 ~~Vv~L~~~~e~l~~Rl~~R~ 117 (173)
T PRK00625 97 GLLVLLSLPIATIYQRLQKRG 117 (173)
T ss_pred CEEEEEECCHHHHHHHHhcCC
Confidence 469999999999999999874
No 104
>PRK12496 hypothetical protein; Provisional
Probab=83.43 E-value=2.6 Score=31.48 Aligned_cols=30 Identities=17% Similarity=0.426 Sum_probs=21.6
Q ss_pred CCcCCCCCCccccCCCCCCCCCCCCCCCCCcccC
Q 030234 94 RWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQR 127 (181)
Q Consensus 94 r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~~r 127 (181)
+..|+-||+.|+... ....|+.||++|..+
T Consensus 127 ~~~C~gC~~~~~~~~----~~~~C~~CG~~~~r~ 156 (164)
T PRK12496 127 RKVCKGCKKKYPEDY----PDDVCEICGSPVKRK 156 (164)
T ss_pred eEECCCCCccccCCC----CCCcCCCCCChhhhc
Confidence 467999999886432 235799999988644
No 105
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=82.21 E-value=11 Score=26.90 Aligned_cols=48 Identities=15% Similarity=0.145 Sum_probs=31.2
Q ss_pred CCCeEecCCCCCHHHHHHHHHHHHhcCCCccEEEEeecChHHHHHHHhCCC
Q 030234 45 QKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 95 (181)
Q Consensus 45 ~~G~iLdGfPrt~~Qa~~l~~~l~~~~~~p~~vi~L~~~~~~~~~Rl~~r~ 95 (181)
..++|+|.---...+...+..+. .+ .+-.+|+|++|.+++.+|+..|.
T Consensus 72 ~~~vVid~~~~~~~~r~~~~~~~--~~-~~~~~v~l~~~~~~~~~R~~~R~ 119 (150)
T cd02021 72 GEGVVVACSALKRIYRDILRGGA--AN-PRVRFVHLDGPREVLAERLAARK 119 (150)
T ss_pred CCCEEEEeccccHHHHHHHHhcC--CC-CCEEEEEEECCHHHHHHHHHhcc
Confidence 35678873323344444443322 12 45579999999999999999884
No 106
>PRK05480 uridine/cytidine kinase; Provisional
Probab=82.21 E-value=8.6 Score=29.27 Aligned_cols=40 Identities=20% Similarity=0.054 Sum_probs=28.2
Q ss_pred CeEecCCCCCHHHHHHHHHHHHhcCCCccEEEEeecChHHHHHHHhCCC
Q 030234 47 GFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 95 (181)
Q Consensus 47 G~iLdGfPrt~~Qa~~l~~~l~~~~~~p~~vi~L~~~~~~~~~Rl~~r~ 95 (181)
-+|+||..--.. . .+ .-..|.+|++++|.++.++|...|.
T Consensus 108 ~vivEg~~l~~~-~-~~-------~~~~d~~I~v~~~~~~~~~R~~~Rd 147 (209)
T PRK05480 108 VIILEGILLLED-E-RL-------RDLMDIKIFVDTPLDIRLIRRLKRD 147 (209)
T ss_pred EEEEEeehhcCc-h-hH-------hhhhceeEEEeCChhHHHHHHHhhc
Confidence 477888754211 1 11 1246899999999999999988875
No 107
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=82.04 E-value=5.3 Score=30.53 Aligned_cols=41 Identities=17% Similarity=0.026 Sum_probs=30.3
Q ss_pred CCeEecCCCCCHHHHHHHHHHHHhcCCCccEEEEeecChHHHHHHHhCCC
Q 030234 46 KGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 95 (181)
Q Consensus 46 ~G~iLdGfPrt~~Qa~~l~~~l~~~~~~p~~vi~L~~~~~~~~~Rl~~r~ 95 (181)
.-||+||++--..+ .+. -..|.+|++++|.++.+.|+..|.
T Consensus 107 ~~vIieG~~~~~~~--~~~-------~~~d~~I~v~~~~~~~l~R~~~R~ 147 (207)
T TIGR00235 107 DVVILEGIMPLFDE--RLR-------DLMDLKIFVDTPLDIRLIRRIERD 147 (207)
T ss_pred CEEEEEehhhhchH--hHH-------HhCCEEEEEECChhHHHHHHHHHH
Confidence 45899999764322 111 247899999999999999998774
No 108
>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=81.20 E-value=11 Score=28.53 Aligned_cols=64 Identities=17% Similarity=0.208 Sum_probs=48.5
Q ss_pred EEEEeecChHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHHhcHHHHHHHhh
Q 030234 76 KVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSK 155 (181)
Q Consensus 76 ~vi~L~~~~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~~r~dd~~~~i~~Rl~~y~~~~~~l~~~y~~ 155 (181)
+||++.++.+++.+|+..|.- .+.+.|..||..-...+. .
T Consensus 117 lvv~ita~p~VLaqRL~~RGR---------------------------------Es~eeI~aRL~R~a~~~~-------~ 156 (192)
T COG3709 117 LVVCITASPEVLAQRLAERGR---------------------------------ESREEILARLARAARYTA-------G 156 (192)
T ss_pred eeEEEecCHHHHHHHHHHhcc---------------------------------CCHHHHHHHHHhhccccc-------C
Confidence 699999999999999998751 357888888874322211 2
Q ss_pred cCCEEEEeCCCChHHHHHHHHHHh
Q 030234 156 KGIVAQLHAEKPPQEVTSEVQKAL 179 (181)
Q Consensus 156 ~~~l~~Ida~~~~~~v~~~i~~~l 179 (181)
.+-++.||-+++.+.--+++.+.|
T Consensus 157 ~~dv~~idNsG~l~~ag~~ll~~l 180 (192)
T COG3709 157 PGDVTTIDNSGELEDAGERLLALL 180 (192)
T ss_pred CCCeEEEcCCCcHHHHHHHHHHHH
Confidence 356999999999998887777655
No 109
>PRK13948 shikimate kinase; Provisional
Probab=79.99 E-value=24 Score=26.71 Aligned_cols=18 Identities=17% Similarity=0.141 Sum_probs=15.9
Q ss_pred cEEEEeecChHHHHHHHh
Q 030234 75 DKVLNFAIDDAVLEERIT 92 (181)
Q Consensus 75 ~~vi~L~~~~~~~~~Rl~ 92 (181)
..||+|++|.+++.+|+.
T Consensus 104 g~vV~L~~~~e~l~~Rl~ 121 (182)
T PRK13948 104 GPVVVLWASPETIYERTR 121 (182)
T ss_pred CeEEEEECCHHHHHHHhc
Confidence 358999999999999984
No 110
>PLN02199 shikimate kinase
Probab=79.99 E-value=17 Score=30.04 Aligned_cols=18 Identities=17% Similarity=0.196 Sum_probs=16.6
Q ss_pred EEEEeecChHHHHHHHhC
Q 030234 76 KVLNFAIDDAVLEERITG 93 (181)
Q Consensus 76 ~vi~L~~~~~~~~~Rl~~ 93 (181)
.||+|++|.+++.+|+..
T Consensus 197 ~vV~Ldas~E~l~~RL~~ 214 (303)
T PLN02199 197 ISIWLDVPLEALAHRIAA 214 (303)
T ss_pred eEEEEECCHHHHHHHHhh
Confidence 699999999999999974
No 111
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=79.74 E-value=16 Score=31.25 Aligned_cols=23 Identities=17% Similarity=0.095 Sum_probs=20.2
Q ss_pred CccEEEEeecChHHHHHHHhCCC
Q 030234 73 KVDKVLNFAIDDAVLEERITGRW 95 (181)
Q Consensus 73 ~p~~vi~L~~~~~~~~~Rl~~r~ 95 (181)
..|.+|++++|.++.++|+..|+
T Consensus 123 ~~D~iI~V~ap~e~ri~Rl~~rR 145 (395)
T PRK03333 123 LFHLVVVVDADVEVRVRRLVEQR 145 (395)
T ss_pred hCCEEEEEECCHHHHHHHHHhcC
Confidence 46899999999999999998753
No 112
>PLN02772 guanylate kinase
Probab=78.30 E-value=22 Score=30.49 Aligned_cols=48 Identities=17% Similarity=0.174 Sum_probs=30.9
Q ss_pred CCCCcHHHHHHHHHHHHHhcHHHH--HHHhhcCCEEEEeCCCChHHHHHHHHHHhc
Q 030234 127 RKDDTAAVLKSRLEAFHKQTEPVI--DYYSKKGIVAQLHAEKPPQEVTSEVQKALS 180 (181)
Q Consensus 127 r~dd~~~~i~~Rl~~y~~~~~~l~--~~y~~~~~l~~Ida~~~~~~v~~~i~~~l~ 180 (181)
|-.++++.|++||..+...+.... .+| -.+.+|. +.++.++++.++|.
T Consensus 268 RGteseE~I~kRL~~A~~Ei~~~~~~~~f----D~vIvND--dLe~A~~~L~~iL~ 317 (398)
T PLN02772 268 RGTETEEQIQKRLRNAEAELEQGKSSGIF----DHILYND--NLEECYKNLKKLLG 317 (398)
T ss_pred cCCCCHHHHHHHHHHHHHHHhhccccCCC----CEEEECC--CHHHHHHHHHHHHh
Confidence 334567899999999866433111 123 2344543 78999999988764
No 113
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=77.85 E-value=24 Score=27.87 Aligned_cols=24 Identities=13% Similarity=-0.090 Sum_probs=19.5
Q ss_pred CCccEEEEeecChHHHHHHHhCCC
Q 030234 72 KKVDKVLNFAIDDAVLEERITGRW 95 (181)
Q Consensus 72 ~~p~~vi~L~~~~~~~~~Rl~~r~ 95 (181)
-.+-+||++.+|.++|++|-..|.
T Consensus 100 ~tt~ciIyl~~plDtc~rrN~erg 123 (261)
T COG4088 100 KTTWCIIYLRTPLDTCLRRNRERG 123 (261)
T ss_pred CCceEEEEEccCHHHHHHhhccCC
Confidence 356689999999999999876553
No 114
>PF03976 PPK2: Polyphosphate kinase 2 (PPK2); InterPro: IPR022488 This presumed domain is found in one or two copies per protein. The domain is about 230 amino acids in length and has many conserved motifs, it has polyphosphate kinase activity [, ].; PDB: 3CZP_A 3RHF_D 3CZQ_B.
Probab=74.38 E-value=13 Score=29.39 Aligned_cols=89 Identities=12% Similarity=0.183 Sum_probs=55.8
Q ss_pred CCCCHHHHHHHHHHHHhcCCCccEEEEeecChHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCCCcccCCCCcH
Q 030234 53 FPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTA 132 (181)
Q Consensus 53 fPrt~~Qa~~l~~~l~~~~~~p~~vi~L~~~~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~~r~dd~~ 132 (181)
|.+..++...||++|...|..+ +=++|.++.++-.+|+..|.-+|.+.-. -++
T Consensus 116 ~~~~~~~I~~FEr~L~~~G~~I-iKfflhIsk~eQ~kRl~~~~~~p~~~wk--------------------------v~~ 168 (228)
T PF03976_consen 116 WERRLEEINRFERMLADDGTLI-IKFFLHISKKEQKKRLKEREEDPLKRWK--------------------------VSP 168 (228)
T ss_dssp HHHHHHHHHHHHHHHHHTTEEE-EEEEEE--HHHHHHHHHHHHHSCCCGGG----------------------------H
T ss_pred HHHHHHHHHHHHHHHHHCCCeE-EEEEEEeCHHHHHHHHHHHhcCcccccc--------------------------CCH
Confidence 4455668888999998777654 6789999999999999999877764311 112
Q ss_pred HH--HHHHHHHHHHhcHHHHHHHhh-cCCEEEEeCCCCh
Q 030234 133 AV--LKSRLEAFHKQTEPVIDYYSK-KGIVAQLHAEKPP 168 (181)
Q Consensus 133 ~~--i~~Rl~~y~~~~~~l~~~y~~-~~~l~~Ida~~~~ 168 (181)
.- -.++...|......+++.=.. .-.++.|+|+...
T Consensus 169 ~D~~~~~~yd~y~~a~~~~l~~T~t~~APW~iI~a~dk~ 207 (228)
T PF03976_consen 169 EDWEQRKHYDRYQKAYEEMLERTDTPYAPWHIIPADDKR 207 (228)
T ss_dssp HHHHHHCCHHHHHHHHHHHHHHH-BSSS-EEEEE-SSHH
T ss_pred HHHHHHhhHHHHHHHHHHHHhccCCCCCCeEEEeCCCHH
Confidence 21 233456666666655554332 3479999999654
No 115
>PRK03846 adenylylsulfate kinase; Provisional
Probab=73.98 E-value=6 Score=30.00 Aligned_cols=41 Identities=20% Similarity=0.102 Sum_probs=27.1
Q ss_pred CeEecCCCCC-HHHHHHHHHHHHhcCCCccEEEEeecChHHHHHH
Q 030234 47 GFILDGFPRT-EVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEER 90 (181)
Q Consensus 47 G~iLdGfPrt-~~Qa~~l~~~l~~~~~~p~~vi~L~~~~~~~~~R 90 (181)
..|+..|... ..+-+.+.+.+.. ..-.+|+|++|.+++.+|
T Consensus 97 ~~VI~~~~~~~~~~R~~~r~~l~~---~~~i~V~L~~~~e~~~~R 138 (198)
T PRK03846 97 LVVLTAFISPHRAERQMVRERLGE---GEFIEVFVDTPLAICEAR 138 (198)
T ss_pred CEEEEEeCCCCHHHHHHHHHHccc---CCEEEEEEcCCHHHHHhc
Confidence 4677788763 3455555444322 223489999999999998
No 116
>TIGR03708 poly_P_AMP_trns polyphosphate:AMP phosphotransferase. Members of this protein family contain a domain duplication. The characterized member from Acinetobacter johnsonii is polyphosphate:AMP phosphotransferase (PAP), which can transfer the terminal phosphate from poly(P) to AMP, yielding ADP. In the opposite direction, this enzyme can synthesize poly(P). Each domain of this protein family is homologous to polyphosphate kinase, an enzyme that can run in the forward direction to extend a polyphosphate chain with a new terminal phosphate from ATP, or in reverse to make ATP (or GTP) from ADP (or GDP).
Probab=72.19 E-value=55 Score=28.99 Aligned_cols=87 Identities=13% Similarity=0.138 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHhcCCCccEEEEeecChHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCCCcccCCCCcHHHHH
Q 030234 57 EVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLK 136 (181)
Q Consensus 57 ~~Qa~~l~~~l~~~~~~p~~vi~L~~~~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~~r~dd~~~~i~ 136 (181)
..+...||..|...|..+ +=++|.++.++-.+|+..|.-+|.+.=. .....-.-.
T Consensus 129 ~~~I~~FE~~L~~~G~~I-lKffLhIsk~EQ~kRl~~r~~~P~k~WK------------------------~s~~D~~~r 183 (493)
T TIGR03708 129 IEDINRFERMLADDGALI-LKFWLHLSKKQQKERLKKLEKDPETRWR------------------------VTPEDWKQL 183 (493)
T ss_pred HHHHHHHHHHHHHCCCEE-EEEEEECCHHHHHHHHHHHhcCCccccC------------------------CCHHHHHHH
Confidence 446678888888777654 6789999999999999999877754210 011111223
Q ss_pred HHHHHHHHhcHHHHHHHhh-cCCEEEEeCCCCh
Q 030234 137 SRLEAFHKQTEPVIDYYSK-KGIVAQLHAEKPP 168 (181)
Q Consensus 137 ~Rl~~y~~~~~~l~~~y~~-~~~l~~Ida~~~~ 168 (181)
.+...|......++..=.. .-.++.|+|+..-
T Consensus 184 ~~wd~Y~~a~e~ml~~T~t~~APW~vI~addK~ 216 (493)
T TIGR03708 184 KVYDRYRKLAERMLRYTSTPYAPWTVVEGEDDR 216 (493)
T ss_pred HhHHHHHHHHHHHHHhcCCCCCCeEEEcCCCHH
Confidence 3456666666655554322 2479999998653
No 117
>KOG3877 consensus NADH:ubiquinone oxidoreductase, NDUFA10/42kDa subunit [Energy production and conversion]
Probab=72.05 E-value=26 Score=28.90 Aligned_cols=25 Identities=16% Similarity=-0.062 Sum_probs=22.6
Q ss_pred CCccEEEEeecChHHHHHHHhCCCc
Q 030234 72 KKVDKVLNFAIDDAVLEERITGRWI 96 (181)
Q Consensus 72 ~~p~~vi~L~~~~~~~~~Rl~~r~~ 96 (181)
..|.+||+|++|...+.+++..|..
T Consensus 216 l~PHLViYld~Pv~~v~~~Ik~rg~ 240 (393)
T KOG3877|consen 216 LWPHLVIYLDTPVNKVLENIKRRGN 240 (393)
T ss_pred cCccEEEEEcCCcHHHHHHHHhcCC
Confidence 6899999999999999999998753
No 118
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=71.77 E-value=15 Score=27.61 Aligned_cols=71 Identities=21% Similarity=0.248 Sum_probs=40.5
Q ss_pred HHHHCCCCCCHHHHHH-------HHHHHHcCCCCCCCeEecCCCCCHHHHHHHHHHHHh------cCCCc---cEEEEee
Q 030234 18 EAMDKGELVSDDLVVG-------IIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEK------QGKKV---DKVLNFA 81 (181)
Q Consensus 18 ~~l~~G~~vpd~~v~~-------ll~~~l~~~~~~~G~iLdGfPrt~~Qa~~l~~~l~~------~~~~p---~~vi~L~ 81 (181)
+.|.+|-.+.|+=-.. .+..++. ..+|+||--- +=-+...++|.+ -+..| -.+|+|.
T Consensus 53 eKM~~GipLnD~DR~pWL~~i~~~~~~~l~---~~q~vVlACS----aLKk~YRdILr~sl~~gk~~~~~~~~l~fi~l~ 125 (191)
T KOG3354|consen 53 EKMTQGIPLNDDDRWPWLKKIAVELRKALA---SGQGVVLACS----ALKKKYRDILRHSLKDGKPGKCPESQLHFILLS 125 (191)
T ss_pred HHHhcCCCCCcccccHHHHHHHHHHHHHhh---cCCeEEEEhH----HHHHHHHHHHHhhcccCCccCCccceEEEeeee
Confidence 5577888888764222 2222222 2478888421 111222233332 11222 2589999
Q ss_pred cChHHHHHHHhCCC
Q 030234 82 IDDAVLEERITGRW 95 (181)
Q Consensus 82 ~~~~~~~~Rl~~r~ 95 (181)
.+.+++..|+..|.
T Consensus 126 ~s~evi~~Rl~~R~ 139 (191)
T KOG3354|consen 126 ASFEVILKRLKKRK 139 (191)
T ss_pred ccHHHHHHHHhhcc
Confidence 99999999999986
No 119
>TIGR03708 poly_P_AMP_trns polyphosphate:AMP phosphotransferase. Members of this protein family contain a domain duplication. The characterized member from Acinetobacter johnsonii is polyphosphate:AMP phosphotransferase (PAP), which can transfer the terminal phosphate from poly(P) to AMP, yielding ADP. In the opposite direction, this enzyme can synthesize poly(P). Each domain of this protein family is homologous to polyphosphate kinase, an enzyme that can run in the forward direction to extend a polyphosphate chain with a new terminal phosphate from ATP, or in reverse to make ATP (or GTP) from ADP (or GDP).
Probab=70.74 E-value=64 Score=28.58 Aligned_cols=87 Identities=17% Similarity=0.151 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHhcCCCccEEEEeecChHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCCCcccCCCCcHHHHH
Q 030234 57 EVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLK 136 (181)
Q Consensus 57 ~~Qa~~l~~~l~~~~~~p~~vi~L~~~~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~~r~dd~~~~i~ 136 (181)
..+...||+.|...|..+ +=++|.++.++-.+|+..|.-+|.+.= +-++..-.-.
T Consensus 388 ~~~I~~FE~~L~~~G~~i-vKf~LhIsk~EQ~~R~~~r~~~p~k~W------------------------K~t~~D~~~r 442 (493)
T TIGR03708 388 YGEINDFEEQLTEHGAIV-VKFWLHIDKEEQLRRFEERENTPFKRY------------------------KITDEDWRNR 442 (493)
T ss_pred HHHHHHHHHHHHHCCCEE-EEEEEEcCHHHHHHHHHHHhcCCccCC------------------------cCCHHHHHHH
Confidence 457788888888887755 678999999999999999988776431 1111111234
Q ss_pred HHHHHHHHhcHHHHHHHhh-cCCEEEEeCCCCh
Q 030234 137 SRLEAFHKQTEPVIDYYSK-KGIVAQLHAEKPP 168 (181)
Q Consensus 137 ~Rl~~y~~~~~~l~~~y~~-~~~l~~Ida~~~~ 168 (181)
++...|......++..=.. ...++.|+|+.--
T Consensus 443 ~~w~~Y~~a~~~ml~~T~t~~APW~vI~a~dK~ 475 (493)
T TIGR03708 443 EKWDAYEDAVNDMIDRTSTIIAPWTLVEANDKR 475 (493)
T ss_pred HhHHHHHHHHHHHHHhcCCCCCCeEEEeCCChH
Confidence 4566676666666655432 3479999998654
No 120
>PF08880 QLQ: QLQ; InterPro: IPR014978 QLQ is named after the conserved Gln, Leu, Gln motif. QLQ is found at the N terminus of SWI2/SNF2 protein, which has been shown to be involved in protein-protein interactions. QLQ has been postulated to be involved in mediating protein interactions []. ; GO: 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=70.38 E-value=7.2 Score=21.60 Aligned_cols=20 Identities=20% Similarity=0.197 Sum_probs=16.5
Q ss_pred HHHHHHHCCCCCCHHHHHHH
Q 030234 15 KAKEAMDKGELVSDDLVVGI 34 (181)
Q Consensus 15 ~i~~~l~~G~~vpd~~v~~l 34 (181)
.+-++|.+|..||++++..+
T Consensus 16 ~ayK~l~~~~pVP~~l~~~I 35 (37)
T PF08880_consen 16 LAYKYLARNQPVPPQLQQAI 35 (37)
T ss_pred HHHHHHHcCCCCCHHHHHhh
Confidence 45678999999999998765
No 121
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=66.79 E-value=6.9 Score=26.70 Aligned_cols=19 Identities=16% Similarity=0.153 Sum_probs=15.6
Q ss_pred EEeecChHHHHHHHhCCCc
Q 030234 78 LNFAIDDAVLEERITGRWI 96 (181)
Q Consensus 78 i~L~~~~~~~~~Rl~~r~~ 96 (181)
|+|+||.+++.+|+..|..
T Consensus 96 i~L~~~~e~~~~R~~~R~~ 114 (129)
T PF13238_consen 96 IFLDCSPEELRKRLKKRGR 114 (129)
T ss_dssp EEEE--HHHHHHHHHCTTT
T ss_pred EEEECCHHHHHHHHHhCCC
Confidence 9999999999999999863
No 122
>KOG1959 consensus Glycosyl hydrolase, family 38 - alpha-mannosidase [Carbohydrate transport and metabolism]
Probab=66.78 E-value=32 Score=32.40 Aligned_cols=143 Identities=20% Similarity=0.331 Sum_probs=87.2
Q ss_pred cCChH-HHHHHHHHHCCCC--------CCHHHHHHHH---------HHHHcCC--CC---CCCeEecCCCCCHHHHHHHH
Q 030234 8 AKTPL-GIKAKEAMDKGEL--------VSDDLVVGII---------DEAMKKP--SC---QKGFILDGFPRTEVQAQKLD 64 (181)
Q Consensus 8 ~~t~l-g~~i~~~l~~G~~--------vpd~~v~~ll---------~~~l~~~--~~---~~G~iLdGfPrt~~Qa~~l~ 64 (181)
..|+. -..+++.+++|.+ ..||.+.... ...|.+. .| .-||=||=|=.+.+||-.|-
T Consensus 104 ~qS~~~k~~Vk~LV~~GrLEFi~Ggw~MnDEA~~hY~dvIDQ~TlGlrfL~~tFG~cgrPrvgWqIDPFGHSreqAslfA 183 (996)
T KOG1959|consen 104 EQSETQKEQVKKLVNEGRLEFIGGGWSMNDEATTHYQDVIDQFTLGLRFLKDTFGECGRPRVGWQIDPFGHSREQASLFA 183 (996)
T ss_pred hcCHHHHHHHHHHHhcCCEEEecCeeeecchhhhhHHHHHHHHHHHHHHHHHHhcccCCcceeeeeCCCCcchHHHHHHH
Confidence 34443 3466777788876 4555544221 1222221 24 36999999999999999874
Q ss_pred HHHHhcCCCccEEEEeecChHHHHHHHhCCC--------------cCCCCCCccccCCCCCCCCCCCCCCCC-CcccCCC
Q 030234 65 EMLEKQGKKVDKVLNFAIDDAVLEERITGRW--------------IHPSSGRTYHTKFAPPKVPGVDDVTGE-PLIQRKD 129 (181)
Q Consensus 65 ~~l~~~~~~p~~vi~L~~~~~~~~~Rl~~r~--------------~~~~tg~~y~~~~~pp~~~~~~~~~~~-~l~~r~d 129 (181)
+ ...|.+++=.++-..=..|+..+. .+-=||..|+ .+.||+--..+-.|+. +++.-+.
T Consensus 184 q------mGfd~~fFaRiDy~dK~~R~~~~~lE~iW~~S~sL~~~~~iFTg~l~n-~Y~~P~gfc~dv~c~d~Pi~D~~~ 256 (996)
T KOG1959|consen 184 Q------MGFDGVFFARIDYQDKAKRMKEKTLEMIWRGSESLGSSSQIFTGALYN-HYSPPPGFCFDVLCGDDPIIDGPR 256 (996)
T ss_pred H------hCccchheeecchhhHHHHHhhccceEEeecCccccchhhhhhhcccc-CCCCCCCceeccccCCCCCCCCCC
Confidence 3 246667776776665556665432 1223666777 6777765433333443 3332222
Q ss_pred CcHHHHHHHHHHHHHhcHHHHHHHhhcC
Q 030234 130 DTAAVLKSRLEAFHKQTEPVIDYYSKKG 157 (181)
Q Consensus 130 d~~~~i~~Rl~~y~~~~~~l~~~y~~~~ 157 (181)
-....++.|...|-......-+||+...
T Consensus 257 ~~d~NVkerVd~Fv~~a~~~a~~~RtnH 284 (996)
T KOG1959|consen 257 SYDYNVKERVDDFVAYAKNQAAYYRTNH 284 (996)
T ss_pred CCCccHHHHHHHHHHHHHHhHhheecce
Confidence 2334689999999999998889987543
No 123
>PRK15103 paraquat-inducible membrane protein A; Provisional
Probab=66.17 E-value=6.9 Score=33.73 Aligned_cols=41 Identities=12% Similarity=0.017 Sum_probs=32.4
Q ss_pred CCCcCCCCCCccccCCCCCCCCCCCCCCCCCcccCCCCcHH
Q 030234 93 GRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAA 133 (181)
Q Consensus 93 ~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~~r~dd~~~ 133 (181)
+-..||.||..++....+|.....|.+||..|..|..++.+
T Consensus 9 ~~~~C~~Cd~l~~~~~l~~g~~a~CpRCg~~L~~~~~~~~~ 49 (419)
T PRK15103 9 KHILCPQCDMLVALPRLEHGQKAACPRCGTTLTVRWDEPRQ 49 (419)
T ss_pred CcccCCCCCceeecCCCCCCCeeECCCCCCCCcCCCCCcHH
Confidence 34569999999887666666677899999999888776544
No 124
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=65.65 E-value=7.5 Score=29.61 Aligned_cols=43 Identities=19% Similarity=0.086 Sum_probs=30.1
Q ss_pred CCeEecCCCCCHHHHHHHHHHHHhcCCCccEEEEeecChHHHHHHHhCCCcC
Q 030234 46 KGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIH 97 (181)
Q Consensus 46 ~G~iLdGfPrt~~Qa~~l~~~l~~~~~~p~~vi~L~~~~~~~~~Rl~~r~~~ 97 (181)
.-+|+||+= .-+-..+. -..|.+|++++|.+++++|+..|...
T Consensus 112 ~iViVEG~~--l~~~~~l~-------~l~D~~Ifvd~~~d~~~~Rr~~R~~~ 154 (187)
T cd02024 112 HILIVDGFL--LYNYKPLV-------DLFDIRYFLRVPYETCKRRREARTGY 154 (187)
T ss_pred cEEEEechH--hcCCHHHH-------hhcCceeEecCCHHHHHHHHHHcCCc
Confidence 457899982 11111221 24799999999999999999998643
No 125
>PHA03136 thymidine kinase; Provisional
Probab=64.49 E-value=27 Score=29.73 Aligned_cols=24 Identities=21% Similarity=0.290 Sum_probs=22.0
Q ss_pred CCccEEEEeecChHHHHHHHhCCC
Q 030234 72 KKVDKVLNFAIDDAVLEERITGRW 95 (181)
Q Consensus 72 ~~p~~vi~L~~~~~~~~~Rl~~r~ 95 (181)
..||.+|+|+++.+++.+|+..|.
T Consensus 190 p~pD~IIyL~l~~e~~~~RI~kRg 213 (378)
T PHA03136 190 PHGGNIVIMDLDECEHAERIIARG 213 (378)
T ss_pred CCCCEEEEEeCCHHHHHHHHHHcC
Confidence 468999999999999999999885
No 126
>KOG2593 consensus Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=64.43 E-value=10 Score=32.63 Aligned_cols=62 Identities=16% Similarity=0.302 Sum_probs=45.6
Q ss_pred CcCCCCCCccccC-----CCCCCCCCCCCCCCCCcccCCCCc-HHHHHHHHHHHHHhcHHHHHHHhhc
Q 030234 95 WIHPSSGRTYHTK-----FAPPKVPGVDDVTGEPLIQRKDDT-AAVLKSRLEAFHKQTEPVIDYYSKK 156 (181)
Q Consensus 95 ~~~~~tg~~y~~~-----~~pp~~~~~~~~~~~~l~~r~dd~-~~~i~~Rl~~y~~~~~~l~~~y~~~ 156 (181)
..||.|++.|+.. ++.-...-.|-.|++.|+.-.... ....+.++..+.++..||.++.++-
T Consensus 129 Y~Cp~C~kkyt~Lea~~L~~~~~~~F~C~~C~gelveDe~~~~~~e~~~~l~~~~~Q~~pi~d~Lk~~ 196 (436)
T KOG2593|consen 129 YVCPNCQKKYTSLEALQLLDNETGEFHCENCGGELVEDENKLPSKESRTALNRLMEQLEPIIDLLKEL 196 (436)
T ss_pred ccCCccccchhhhHHHHhhcccCceEEEecCCCchhcccccCchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6899999999863 333334456888999888654442 3345588999999999999999863
No 127
>TIGR00155 pqiA_fam integral membrane protein, PqiA family. This family consists of uncharacterized predicted integral membrane proteins found, so far, only in the Proteobacteria. Of two members in E. coli, one is induced by paraquat and is designated PqiA, paraquat-inducible protein A.
Probab=63.96 E-value=9 Score=32.86 Aligned_cols=39 Identities=8% Similarity=-0.132 Sum_probs=30.7
Q ss_pred CcCCCCCCccccCCCCCCCCCCCCCCCCCcccCCCCcHH
Q 030234 95 WIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAA 133 (181)
Q Consensus 95 ~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~~r~dd~~~ 133 (181)
..||.||..++....++.....|.+||..|..|..++.+
T Consensus 14 ~~C~~Cd~l~~~~~l~~g~~a~CpRCg~~L~~~~~~~~~ 52 (403)
T TIGR00155 14 ILCSQCDMLVALPRIESGQKAACPRCGTTLTVGWDWSLQ 52 (403)
T ss_pred eeCCCCCCcccccCCCCCCeeECCCCCCCCcCCCCCCHH
Confidence 359999999887666666677899999999887776644
No 128
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=62.32 E-value=87 Score=27.62 Aligned_cols=20 Identities=35% Similarity=0.385 Sum_probs=17.3
Q ss_pred cEEEEeecChHHHHHHHhCC
Q 030234 75 DKVLNFAIDDAVLEERITGR 94 (181)
Q Consensus 75 ~~vi~L~~~~~~~~~Rl~~r 94 (181)
..+|+|++|.+++.+|+..+
T Consensus 93 ~~vI~L~as~e~l~~Rl~~~ 112 (488)
T PRK13951 93 EKTLFLYAPPEVLMERVTTE 112 (488)
T ss_pred CeEEEEECCHHHHHHHhccC
Confidence 35999999999999999754
No 129
>COG2326 Uncharacterized conserved protein [Function unknown]
Probab=62.28 E-value=12 Score=30.12 Aligned_cols=41 Identities=20% Similarity=0.217 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHhcCCCccEEEEeecChHHHHHHHhCCCcCCC
Q 030234 58 VQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPS 99 (181)
Q Consensus 58 ~Qa~~l~~~l~~~~~~p~~vi~L~~~~~~~~~Rl~~r~~~~~ 99 (181)
.++-.||++|...|+.+ +=+.|.+++++=.+|+..|+.||.
T Consensus 164 ~eip~FE~mL~~~Gi~l-~Kfwl~Is~eeQ~~RF~~R~~dP~ 204 (270)
T COG2326 164 REIPEFERMLVESGIIL-VKFWLSISREEQLERFLERRNDPL 204 (270)
T ss_pred HHhhHHHHHHHhCCeEE-EEEEEeCCHHHHHHHHHHHhcCHH
Confidence 35566778888888765 578899999999999999998775
No 130
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=59.19 E-value=12 Score=23.28 Aligned_cols=31 Identities=13% Similarity=0.121 Sum_probs=23.7
Q ss_pred CCeEecCCCCCHHHHHHHHHHHHhcCCCccEEEEeec
Q 030234 46 KGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAI 82 (181)
Q Consensus 46 ~G~iLdGfPrt~~Qa~~l~~~l~~~~~~p~~vi~L~~ 82 (181)
..||+||+.....+... .....+|..|+|++
T Consensus 33 ~~~I~eg~~~~~~~~~~------~~~~~~d~~Iyld~ 63 (69)
T cd02019 33 EIVILEGLYASYKSRDA------RIRDLADLKIYLDA 63 (69)
T ss_pred EEEEecchhhhhhhHHh------hccccccEEEEEEe
Confidence 48999999998887541 12357899999987
No 131
>PRK06696 uridine kinase; Validated
Probab=55.82 E-value=37 Score=26.20 Aligned_cols=23 Identities=22% Similarity=-0.019 Sum_probs=20.5
Q ss_pred CccEEEEeecChHHHHHHHhCCC
Q 030234 73 KVDKVLNFAIDDAVLEERITGRW 95 (181)
Q Consensus 73 ~p~~vi~L~~~~~~~~~Rl~~r~ 95 (181)
..|.+|++++|.++..+|+..|.
T Consensus 146 ~~d~~i~v~~~~e~~~~R~~~Rd 168 (223)
T PRK06696 146 LWDYKIFLDTDFEVSRRRGAKRD 168 (223)
T ss_pred hCCEEEEEECCHHHHHHHHHHhh
Confidence 45899999999999999999874
No 132
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=55.22 E-value=11 Score=26.15 Aligned_cols=27 Identities=22% Similarity=0.227 Sum_probs=16.7
Q ss_pred CCcCCCCCCccccCCCCCCCCCCCCCCCCC
Q 030234 94 RWIHPSSGRTYHTKFAPPKVPGVDDVTGEP 123 (181)
Q Consensus 94 r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~ 123 (181)
.|+||.||..|.=....| .+|+-||..
T Consensus 9 KR~Cp~CG~kFYDLnk~P---ivCP~CG~~ 35 (108)
T PF09538_consen 9 KRTCPSCGAKFYDLNKDP---IVCPKCGTE 35 (108)
T ss_pred cccCCCCcchhccCCCCC---ccCCCCCCc
Confidence 478999997665333222 457777753
No 133
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=54.65 E-value=32 Score=25.51 Aligned_cols=23 Identities=26% Similarity=0.263 Sum_probs=20.5
Q ss_pred CccEEEEeecChHHHHHHHhCCC
Q 030234 73 KVDKVLNFAIDDAVLEERITGRW 95 (181)
Q Consensus 73 ~p~~vi~L~~~~~~~~~Rl~~r~ 95 (181)
..|.+|++++|.++.++|+..|.
T Consensus 121 ~~D~vv~V~a~~~~ri~Rl~~Rd 143 (179)
T cd02022 121 LVDRVIVVDAPPEIQIERLMKRD 143 (179)
T ss_pred hCCeEEEEECCHHHHHHHHHHcC
Confidence 46899999999999999998774
No 134
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=53.88 E-value=84 Score=23.18 Aligned_cols=42 Identities=19% Similarity=0.025 Sum_probs=25.2
Q ss_pred CCeEecCCCCCHHHHHHHHHHHHhcCCCccEEEEeecChHHHHHH
Q 030234 46 KGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEER 90 (181)
Q Consensus 46 ~G~iLdGfPrt~~Qa~~l~~~l~~~~~~p~~vi~L~~~~~~~~~R 90 (181)
..+|+|..=....+...+..... ..+-.+|+|++|.+.+.+|
T Consensus 91 ~~VI~d~~~~~~~~r~~~~~~~~---~~~~~~v~l~~~~e~~~~R 132 (184)
T TIGR00455 91 IIVITSFISPYRADRQMVRELIE---KGEFIEVFVDCPLEVCEQR 132 (184)
T ss_pred CEEEEecCCCCHHHHHHHHHhCc---CCCeEEEEEeCCHHHHHHh
Confidence 45677753122444444433221 1245789999999999988
No 135
>COG4639 Predicted kinase [General function prediction only]
Probab=53.68 E-value=65 Score=24.13 Aligned_cols=66 Identities=21% Similarity=0.187 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHcCCCC-CCCeEecCCCCCHHHHHHHHHHHHhcCCCccEEEEeecChHHHHHHHhCC
Q 030234 28 DDLVVGIIDEAMKKPSC-QKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGR 94 (181)
Q Consensus 28 d~~v~~ll~~~l~~~~~-~~G~iLdGfPrt~~Qa~~l~~~l~~~~~~p~~vi~L~~~~~~~~~Rl~~r 94 (181)
++.+.+++.+++.+.-. .+-.|+|-.=--.++-..+-.+-..+|..+ .+|+|+.|.+.|.+|-..|
T Consensus 51 ~~~~~~~l~~~l~qrl~~Gk~tiidAtn~rr~~r~~l~~La~~y~~~~-~~ivfdtp~~~c~aRNk~~ 117 (168)
T COG4639 51 DELVWDILYKQLEQRLRRGKFTIIDATNLRREDRRKLIDLAKAYGYKI-YAIVFDTPLELCLARNKLR 117 (168)
T ss_pred HHHHHHHHHHHHHHHHHcCCeEEEEcccCCHHHHHHHHHHHHHhCCeE-EEEEEeCCHHHHHHHhhcc
Confidence 55666666666654322 356899988654455544443334566655 6799999999999997533
No 136
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=53.49 E-value=1.1e+02 Score=25.63 Aligned_cols=47 Identities=13% Similarity=-0.119 Sum_probs=31.5
Q ss_pred eEecCCCCCHHHHHHHHHHHHhcCCCccEEEEeecChHHHHHHHhCCC
Q 030234 48 FILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 95 (181)
Q Consensus 48 ~iLdGfPrt~~Qa~~l~~~l~~~~~~p~~vi~L~~~~~~~~~Rl~~r~ 95 (181)
+|+|.==-...+...+..+-...+. +-.+|++++|.+++.+|...|.
T Consensus 130 vilDd~fy~ks~Ryel~~LAr~~~~-~~~~V~ld~ple~~l~RN~~R~ 176 (340)
T TIGR03575 130 LVLDDNFYYQSMRYEVYQLARKYSL-GFCQLFLDCPVESCLLRNKQRP 176 (340)
T ss_pred ceecCCCCCHHHHHHHHHHHHHhCC-CEEEEEEeCCHHHHHHHHhcCC
Confidence 6676544444444444433333443 4489999999999999999985
No 137
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=53.41 E-value=15 Score=19.54 Aligned_cols=24 Identities=29% Similarity=0.472 Sum_probs=16.9
Q ss_pred CcCCCCCCccccCCCCCCCCCCCCCCCC
Q 030234 95 WIHPSSGRTYHTKFAPPKVPGVDDVTGE 122 (181)
Q Consensus 95 ~~~~~tg~~y~~~~~pp~~~~~~~~~~~ 122 (181)
.+|+.||-+|.... .+..|+.||.
T Consensus 2 ~~C~~CGy~y~~~~----~~~~CP~Cg~ 25 (33)
T cd00350 2 YVCPVCGYIYDGEE----APWVCPVCGA 25 (33)
T ss_pred EECCCCCCEECCCc----CCCcCcCCCC
Confidence 56888998876433 4567888875
No 138
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=53.22 E-value=20 Score=27.85 Aligned_cols=83 Identities=8% Similarity=0.029 Sum_probs=46.5
Q ss_pred CccEEEEeecChHHHHHHHhCCCcC--CCCCCccccCCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHH-HHHhcHHH
Q 030234 73 KVDKVLNFAIDDAVLEERITGRWIH--PSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEA-FHKQTEPV 149 (181)
Q Consensus 73 ~p~~vi~L~~~~~~~~~Rl~~r~~~--~~tg~~y~~~~~pp~~~~~~~~~~~~l~~r~dd~~~~i~~Rl~~-y~~~~~~l 149 (181)
..|+.|++++|.+++.+|+..|... ...|+... +.+.+-..-+++....+... |.....|.
T Consensus 128 ~~D~~ifvd~~~~~~~~rl~~R~~r~~~~~~r~~~----------------~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 191 (220)
T cd02025 128 FFDFSIYVDADEDDIEKWYIKRFLKLRETAFSDPD----------------SYFHRYAKMSEEEAIAFAREVWKNINLKN 191 (220)
T ss_pred hCCeEEEEECCHHHHHHHHHHHHHHHHHHHHhCch----------------hhhhcccCCCHHHHHHHHHHHHHHcCHHH
Confidence 3689999999999987777665321 00111000 00111112234556666655 88888886
Q ss_pred HHHH-hh----cCCEEEEeCCCChHHH
Q 030234 150 IDYY-SK----KGIVAQLHAEKPPQEV 171 (181)
Q Consensus 150 ~~~y-~~----~~~l~~Ida~~~~~~v 171 (181)
.+-| .. -..++..+++.++..+
T Consensus 192 ~~~~i~p~~~~AD~ii~~~~~~~~~~~ 218 (220)
T cd02025 192 LRENILPTRNRADLILEKGADHSIEEV 218 (220)
T ss_pred HhhhccCCccceEEEEEeCCCCcEEEE
Confidence 6433 21 1357777787776654
No 139
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=53.19 E-value=54 Score=24.53 Aligned_cols=23 Identities=22% Similarity=-0.004 Sum_probs=19.4
Q ss_pred CccEEEEeecChHHHHHHHhCCC
Q 030234 73 KVDKVLNFAIDDAVLEERITGRW 95 (181)
Q Consensus 73 ~p~~vi~L~~~~~~~~~Rl~~r~ 95 (181)
..|.+|++++|.+..+.|...|.
T Consensus 118 ~~d~~i~v~~~~~~~~~R~~~Rd 140 (198)
T cd02023 118 LMDLKIFVDTDADVRLIRRIERD 140 (198)
T ss_pred hcCeEEEEECChhHHHHHHHHHH
Confidence 36899999999999888887764
No 140
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=52.88 E-value=20 Score=21.19 Aligned_cols=29 Identities=24% Similarity=0.288 Sum_probs=18.9
Q ss_pred CCcCCCCCCccccCCC------CC-------CCCCCCCCCCC
Q 030234 94 RWIHPSSGRTYHTKFA------PP-------KVPGVDDVTGE 122 (181)
Q Consensus 94 r~~~~~tg~~y~~~~~------pp-------~~~~~~~~~~~ 122 (181)
+.+|..||-+|+...- +| ++...|+.|+.
T Consensus 1 ~y~C~~CgyiYd~~~Gd~~~~i~pGt~f~~Lp~~w~CP~C~a 42 (50)
T cd00730 1 KYECRICGYIYDPAEGDPDEGIPPGTPFEDLPDDWVCPVCGA 42 (50)
T ss_pred CcCCCCCCeEECCCCCCcccCcCCCCCHhHCCCCCCCCCCCC
Confidence 3578899999997532 22 23457777774
No 141
>COG2240 PdxK Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme metabolism]
Probab=52.60 E-value=93 Score=25.44 Aligned_cols=61 Identities=7% Similarity=0.121 Sum_probs=43.8
Q ss_pred HCCCCCCHHHHHHHHHHHHcCCC-CCCCeEecCCCCCHHHHHHHHHHHHhcC-CCccEEEEee
Q 030234 21 DKGELVSDDLVVGIIDEAMKKPS-CQKGFILDGFPRTEVQAQKLDEMLEKQG-KKVDKVLNFA 81 (181)
Q Consensus 21 ~~G~~vpd~~v~~ll~~~l~~~~-~~~G~iLdGfPrt~~Qa~~l~~~l~~~~-~~p~~vi~L~ 81 (181)
.-|...|++.+.+++..-..... ..-.-||.||=.|.+|.+.+..++.... -.|+.++.+|
T Consensus 48 ~~g~v~~~e~l~~~l~~l~~~~~~~~~davltGYlgs~~qv~~i~~~v~~vk~~~P~~~~l~D 110 (281)
T COG2240 48 WTGIVMPPEQLADLLNGLEAIDKLGECDAVLTGYLGSAEQVRAIAGIVKAVKEANPNALYLCD 110 (281)
T ss_pred CCCcCCCHHHHHHHHHHHHhcccccccCEEEEccCCCHHHHHHHHHHHHHHhccCCCeEEEeC
Confidence 35888999999999875443221 2346799999999999999887776422 3577666554
No 142
>COG2452 Predicted site-specific integrase-resolvase [DNA replication, recombination, and repair]
Probab=51.71 E-value=41 Score=25.77 Aligned_cols=43 Identities=21% Similarity=0.353 Sum_probs=31.7
Q ss_pred HHHHHHHHHhcHHHHHHHhhcCC-EEEEe-CCCChHHHHHHHHHHhc
Q 030234 136 KSRLEAFHKQTEPVIDYYSKKGI-VAQLH-AEKPPQEVTSEVQKALS 180 (181)
Q Consensus 136 ~~Rl~~y~~~~~~l~~~y~~~~~-l~~Id-a~~~~~~v~~~i~~~l~ 180 (181)
+.|+..|. ..-+...|+.+|. +..+| ++.+.+|+++++.++|.
T Consensus 123 kDRL~RFG--fe~le~~~~a~~~eivvv~~~e~~~eELveDlisIlt 167 (193)
T COG2452 123 KDRLNRFG--FELVEAVCKAHNVEIVVVNQEDKDSEELVEDLVSILT 167 (193)
T ss_pred cchHhHHh--HHHHHHHHHhcCcEEEEecCCCCCHHHHHHHHHHHHH
Confidence 44666666 5667778887764 78888 56666999999988763
No 143
>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2.7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....
Probab=51.24 E-value=66 Score=25.23 Aligned_cols=49 Identities=20% Similarity=0.256 Sum_probs=34.8
Q ss_pred CcHHHHHHHHHHHHHhcHHHHHHHh-hcCCEEEEeCCCChHHHHHHHHHH
Q 030234 130 DTAAVLKSRLEAFHKQTEPVIDYYS-KKGIVAQLHAEKPPQEVTSEVQKA 178 (181)
Q Consensus 130 d~~~~i~~Rl~~y~~~~~~l~~~y~-~~~~l~~Ida~~~~~~v~~~i~~~ 178 (181)
++++..+.|-+........+.+|+. +.|.+-.+||+.+-.+=-+.|...
T Consensus 68 ~n~~~~~~R~~~a~~~l~dl~~~l~~~~G~VAI~DATN~T~~RR~~l~~~ 117 (222)
T PF01591_consen 68 DNEEAKKLREQIAKEALEDLIEWLQEEGGQVAIFDATNSTRERRKMLVER 117 (222)
T ss_dssp T-HHHHHHHHHHHHHHHHHHHHHHHTS--SEEEEES---SHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeCCCCCHHHHHHHHHH
Confidence 4678888888888999999999999 557899999999876655555443
No 144
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=50.90 E-value=15 Score=26.28 Aligned_cols=28 Identities=29% Similarity=0.455 Sum_probs=17.5
Q ss_pred CCCcCCCCCCccccCCCCCCCCCCCCCCCCC
Q 030234 93 GRWIHPSSGRTYHTKFAPPKVPGVDDVTGEP 123 (181)
Q Consensus 93 ~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~ 123 (181)
..|+||.||..|.-....| .+|+.||..
T Consensus 8 tKr~Cp~cg~kFYDLnk~p---~vcP~cg~~ 35 (129)
T TIGR02300 8 TKRICPNTGSKFYDLNRRP---AVSPYTGEQ 35 (129)
T ss_pred ccccCCCcCccccccCCCC---ccCCCcCCc
Confidence 3578999997665333333 356677754
No 145
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=48.00 E-value=42 Score=26.01 Aligned_cols=44 Identities=20% Similarity=0.142 Sum_probs=29.5
Q ss_pred CeEecCCCCCHHHHHHHHHHHHhcCCCccEEEEeecChHHHHHHHhCCC
Q 030234 47 GFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 95 (181)
Q Consensus 47 G~iLdGfPrt~~Qa~~l~~~l~~~~~~p~~vi~L~~~~~~~~~Rl~~r~ 95 (181)
-+|+||+....... .+.. +. ...|.+|++++|.++.++|+..|.
T Consensus 139 ivIvEG~~~l~~~~-~~~~-l~---~~~D~vi~v~~~~~~~~~R~~~R~ 182 (229)
T PRK09270 139 LVIVEGNYLLLDEE-PWRR-LA---GLFDFTIFLDAPAEVLRERLVARK 182 (229)
T ss_pred EEEEcCcceeeccc-cHHH-HH---hhCCEEEEEECCHHHHHHHHHHHH
Confidence 46778886643221 1111 11 246899999999999999999874
No 146
>PRK07429 phosphoribulokinase; Provisional
Probab=47.97 E-value=55 Score=27.23 Aligned_cols=40 Identities=15% Similarity=0.121 Sum_probs=27.1
Q ss_pred CCeEecCC-CCCHHHHHHHHHHHHhcCCCccEEEEeecChHHHHHHHhCCC
Q 030234 46 KGFILDGF-PRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 95 (181)
Q Consensus 46 ~G~iLdGf-Prt~~Qa~~l~~~l~~~~~~p~~vi~L~~~~~~~~~Rl~~r~ 95 (181)
..+|+||. +--..... -..|+.|++++|.++...|...|.
T Consensus 106 ~iVIvEG~~~l~~~~lr----------~~~D~~I~Vda~~evr~~Rri~Rd 146 (327)
T PRK07429 106 KIVVVEGLHPLYDERVR----------ELYDFKVYLDPPEEVKIAWKIKRD 146 (327)
T ss_pred cEEEEechhhcCcHhHH----------hhCCEEEEEECCHHHHHHHHHHHH
Confidence 46888996 33221111 136899999999999987766664
No 147
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=47.58 E-value=43 Score=25.23 Aligned_cols=23 Identities=17% Similarity=0.175 Sum_probs=18.6
Q ss_pred CccEEEEeecChHHHHHHHhCCC
Q 030234 73 KVDKVLNFAIDDAVLEERITGRW 95 (181)
Q Consensus 73 ~p~~vi~L~~~~~~~~~Rl~~r~ 95 (181)
..|.||++.+|.++-++|+..|+
T Consensus 122 ~~D~vi~V~a~~e~ri~Rl~~R~ 144 (180)
T PF01121_consen 122 LCDEVIVVYAPEEIRIKRLMERD 144 (180)
T ss_dssp GSSEEEEEE--HHHHHHHHHHHH
T ss_pred hhceEEEEECCHHHHHHHHHhhC
Confidence 57899999999999999998773
No 148
>PF14581 SseB_C: SseB protein C-terminal domain
Probab=45.22 E-value=94 Score=20.95 Aligned_cols=54 Identities=17% Similarity=0.250 Sum_probs=42.4
Q ss_pred cCCCCcHHHHHHHHHHHHHhcHHHHHHHhh--------cCCEEEEeCCC-ChHHHHHHHHHHh
Q 030234 126 QRKDDTAAVLKSRLEAFHKQTEPVIDYYSK--------KGIVAQLHAEK-PPQEVTSEVQKAL 179 (181)
Q Consensus 126 ~r~dd~~~~i~~Rl~~y~~~~~~l~~~y~~--------~~~l~~Ida~~-~~~~v~~~i~~~l 179 (181)
.-+.+.+..+...|..|-+....|..-|-- ...++.||... +.+++++.|..+.
T Consensus 11 ~~P~~~p~~l~~aL~~~~~~~~~V~~Ayl~~~~~~~~~~~~li~vd~~~~~~~~~~~~i~~~~ 73 (108)
T PF14581_consen 11 GEPEEEPTDLLAALSEYFKQHKNVRAAYLALMQDEDEQPSLLIGVDFDGEDIEEIFQEIGRAA 73 (108)
T ss_pred cCCccCHHHHHHHHHHHHhhCccHHHhHHHHhhccCCCceEEEEEeccChhHHHHHHHHHHHh
Confidence 345668889999999999998888886641 12578899888 8899999987754
No 149
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=45.02 E-value=70 Score=24.10 Aligned_cols=50 Identities=22% Similarity=0.310 Sum_probs=31.9
Q ss_pred CCCeEecCCCCCHHHHHHHHHHHHhcCCCccEEEEeecChHHHHHHHhCCC
Q 030234 45 QKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 95 (181)
Q Consensus 45 ~~G~iLdGfPrt~~Qa~~l~~~l~~~~~~p~~vi~L~~~~~~~~~Rl~~r~ 95 (181)
...+|+||--++..-+..+.+.+...|..+ .++++.+|.+..+.|...|.
T Consensus 93 ~~nii~E~tl~~~~~~~~~~~~~k~~GY~v-~l~~v~~~~e~s~~rv~~R~ 142 (199)
T PF06414_consen 93 RYNIIFEGTLSNPSKLRKLIREAKAAGYKV-ELYYVAVPPELSIERVRQRY 142 (199)
T ss_dssp T--EEEE--TTSSHHHHHHHHHHHCTT-EE-EEEEE---HHHHHHHHHHHH
T ss_pred CCCEEEecCCCChhHHHHHHHHHHcCCceE-EEEEEECCHHHHHHHHHHHH
Confidence 358999998777777764555566777775 46778899999999998875
No 150
>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]
Probab=44.48 E-value=1.3e+02 Score=23.54 Aligned_cols=66 Identities=17% Similarity=0.207 Sum_probs=43.2
Q ss_pred cEEEEeecChHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHHhcHHHHHHHh
Q 030234 75 DKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYS 154 (181)
Q Consensus 75 ~~vi~L~~~~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~~r~dd~~~~i~~Rl~~y~~~~~~l~~~y~ 154 (181)
-.+|..-|+.+.-++|+..|- .-+++..++|+..-. |+.+-..
T Consensus 127 ~~tvvV~cd~~~Ql~Rl~~Rd---------------------------------~lse~dAe~Rl~sQm----p~~~k~~ 169 (225)
T KOG3220|consen 127 HKTVVVTCDEELQLERLVERD---------------------------------ELSEEDAENRLQSQM----PLEKKCE 169 (225)
T ss_pred eeEEEEEECcHHHHHHHHHhc---------------------------------cccHHHHHHHHHhcC----CHHHHHH
Confidence 357777788888888887552 235666777776432 3333332
Q ss_pred hcCCEEEEeCCCChHHHHHHHHHHh
Q 030234 155 KKGIVAQLHAEKPPQEVTSEVQKAL 179 (181)
Q Consensus 155 ~~~~l~~Ida~~~~~~v~~~i~~~l 179 (181)
.. =+.||-++++++..+++..++
T Consensus 170 ~a--~~Vi~Nng~~~~l~~qv~~v~ 192 (225)
T KOG3220|consen 170 LA--DVVIDNNGSLEDLYEQVEKVL 192 (225)
T ss_pred hh--heeecCCCChHHHHHHHHHHH
Confidence 21 257889999999999988754
No 151
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=42.83 E-value=20 Score=27.13 Aligned_cols=47 Identities=17% Similarity=0.137 Sum_probs=26.9
Q ss_pred CcCCCCCCccccCCCCCCCCCCCCCCCCCcccCCCCc---HHHHHHHHHHHHH
Q 030234 95 WIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDT---AAVLKSRLEAFHK 144 (181)
Q Consensus 95 ~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~~r~dd~---~~~i~~Rl~~y~~ 144 (181)
.+||.||..|...--- ...-.|+.||+.|+. .|+ .+.+++|+..-.+
T Consensus 118 Y~Cp~C~~rytf~eA~-~~~F~Cp~Cg~~L~~--~dn~~~~~~l~~~I~~l~~ 167 (178)
T PRK06266 118 FFCPNCHIRFTFDEAM-EYGFRCPQCGEMLEE--YDNSELIKELKEQIKELEE 167 (178)
T ss_pred EECCCCCcEEeHHHHh-hcCCcCCCCCCCCee--cccHHHHHHHHHHHHHHHH
Confidence 3577777666542110 124579999999875 343 3455566654443
No 152
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=40.87 E-value=11 Score=24.83 Aligned_cols=34 Identities=21% Similarity=0.319 Sum_probs=23.7
Q ss_pred eEecCCCCCHHHHHHHHHHHHhcCCCccEEEEee
Q 030234 48 FILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFA 81 (181)
Q Consensus 48 ~iLdGfPrt~~Qa~~l~~~l~~~~~~p~~vi~L~ 81 (181)
=++-+|||-.--.+.++.-|...|..|..+++++
T Consensus 46 ~L~t~FPRr~~~~~d~~~TL~e~GL~P~~~LfVq 79 (82)
T cd01773 46 ELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQ 79 (82)
T ss_pred EEecCCCCcccCCcccCCCHHHcCCCCCcEEEEe
Confidence 3899999954433333334567799999988875
No 153
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=38.88 E-value=2.1e+02 Score=25.64 Aligned_cols=50 Identities=16% Similarity=0.085 Sum_probs=38.5
Q ss_pred CCeEecCCCCCHHHHHHHHHHHHhcCCCccEEEEeecChHHHHHHHhCCCc
Q 030234 46 KGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWI 96 (181)
Q Consensus 46 ~G~iLdGfPrt~~Qa~~l~~~l~~~~~~p~~vi~L~~~~~~~~~Rl~~r~~ 96 (181)
..+|+|.==.+..+-..+.++....|.. -.++++++|.+++.+|...|..
T Consensus 421 ~sVVIDaTn~~~~~R~~~i~lAk~~gv~-v~~i~~~~p~e~~~~Rn~~R~~ 470 (526)
T TIGR01663 421 KRCAIDNTNPDAASRAKFLQCARAAGIP-CRCFLFNAPLAQAKHNIAFREL 470 (526)
T ss_pred CcEEEECCCCCHHHHHHHHHHHHHcCCe-EEEEEeCCCHHHHHHHHHhhcc
Confidence 5689998766666666666555566664 4689999999999999998854
No 154
>PRK00889 adenylylsulfate kinase; Provisional
Probab=38.17 E-value=85 Score=22.90 Aligned_cols=17 Identities=18% Similarity=-0.142 Sum_probs=14.8
Q ss_pred cEEEEeecChHHHHHHH
Q 030234 75 DKVLNFAIDDAVLEERI 91 (181)
Q Consensus 75 ~~vi~L~~~~~~~~~Rl 91 (181)
-.+|+|++|.+++.+|.
T Consensus 101 ~~~v~l~~~~e~~~~R~ 117 (175)
T PRK00889 101 FLEVFVDAPLEVCEQRD 117 (175)
T ss_pred eEEEEEcCCHHHHHHhC
Confidence 36999999999999984
No 155
>COG1439 Predicted nucleic acid-binding protein, consists of a PIN domain and a Zn-ribbon module [General function prediction only]
Probab=38.13 E-value=16 Score=27.70 Aligned_cols=30 Identities=17% Similarity=0.276 Sum_probs=20.9
Q ss_pred CCcCCCCCCccccCCCCCCCCCCCCCCCCCcccCCC
Q 030234 94 RWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKD 129 (181)
Q Consensus 94 r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~~r~d 129 (181)
+..|.-|+++|+ .+...|+.||+++..+..
T Consensus 139 ~~rC~GC~~~f~------~~~~~Cp~CG~~~~~~~~ 168 (177)
T COG1439 139 RLRCHGCKRIFP------EPKDFCPICGSPLKRKRV 168 (177)
T ss_pred eEEEecCceecC------CCCCcCCCCCCceEEeee
Confidence 456667777776 345689999998765443
No 156
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=38.13 E-value=1.5e+02 Score=25.78 Aligned_cols=47 Identities=17% Similarity=0.399 Sum_probs=30.0
Q ss_pred HHHHHcCCCCCCCeEec--CCC-CCHHHHHHHHHHHHhcCC--CccEEEEeec
Q 030234 35 IDEAMKKPSCQKGFILD--GFP-RTEVQAQKLDEMLEKQGK--KVDKVLNFAI 82 (181)
Q Consensus 35 l~~~l~~~~~~~G~iLd--GfP-rt~~Qa~~l~~~l~~~~~--~p~~vi~L~~ 82 (181)
+...+.. .....+|+| |++ ++..|++.|.+++...+. ....+++|+.
T Consensus 291 l~~~l~~-~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsA 342 (432)
T PRK12724 291 FKETLAR-DGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSS 342 (432)
T ss_pred HHHHHHh-CCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeC
Confidence 3444543 223669999 995 899999999887754332 2245555665
No 157
>PF14240 YHYH: YHYH protein
Probab=37.07 E-value=14 Score=27.58 Aligned_cols=10 Identities=50% Similarity=1.036 Sum_probs=9.1
Q ss_pred CCeEecCCCC
Q 030234 46 KGFILDGFPR 55 (181)
Q Consensus 46 ~G~iLdGfPr 55 (181)
-||-+||||-
T Consensus 88 iG~A~DGfPI 97 (166)
T PF14240_consen 88 IGYAADGFPI 97 (166)
T ss_pred EEEEecCCee
Confidence 6999999996
No 158
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=36.17 E-value=19 Score=21.97 Aligned_cols=25 Identities=28% Similarity=0.299 Sum_probs=15.9
Q ss_pred HHHHHHHcCCCCCCCeEecCCCCCHHH
Q 030234 33 GIIDEAMKKPSCQKGFILDGFPRTEVQ 59 (181)
Q Consensus 33 ~ll~~~l~~~~~~~G~iLdGfPrt~~Q 59 (181)
.-+++.+... ..-||+.|||-+.+.
T Consensus 19 ~~lr~~~k~~--~DI~I~NGF~~~~d~ 43 (57)
T PF14453_consen 19 FELRKESKPD--ADIVILNGFPTKEDI 43 (57)
T ss_pred HHHHHhhCCC--CCEEEEcCcccCCcc
Confidence 3345544332 468999999986543
No 159
>PRK01254 hypothetical protein; Provisional
Probab=36.04 E-value=3.6e+02 Score=25.10 Aligned_cols=94 Identities=20% Similarity=0.238 Sum_probs=55.5
Q ss_pred CeEecCCCC-CHHHHHHHHHHHHhcCCCccEEEEeecChHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCCCcc
Q 030234 47 GFILDGFPR-TEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLI 125 (181)
Q Consensus 47 G~iLdGfPr-t~~Qa~~l~~~l~~~~~~p~~vi~L~~~~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~ 125 (181)
.++|-|||. |.++++.|-+++.+.+..|.-|=.|.=..-++-- ..|++..+|-... ..+++++.
T Consensus 561 pyfIvGhPGeTeeDf~eLaefLkel~f~~eQVQ~FTPtP~t~~T------------~MYytg~dP~~~~---~~~~~~v~ 625 (707)
T PRK01254 561 PYFISAHPGTTDEDMVNLALWLKKNRFRLDQVQNFYPSPMANAT------------TMYYTGKNPLKKV---KYKSEDVV 625 (707)
T ss_pred EeEEEECCCCCHHHHHHHHHHHHHhCCCcceeeeeecCCCcCch------------HHHhccCCccccc---ccCCCeee
Confidence 478999999 8889999988998888888776555533312111 2344433332100 00123333
Q ss_pred cCCCCcHHHHHHHHHHHHH--hcHHHHHHHhh
Q 030234 126 QRKDDTAAVLKSRLEAFHK--QTEPVIDYYSK 155 (181)
Q Consensus 126 ~r~dd~~~~i~~Rl~~y~~--~~~~l~~~y~~ 155 (181)
.-.++.+-.+++.+-.|+. ++..+.+-...
T Consensus 626 v~k~~~ek~~qka~l~~~~p~n~~~~~~al~~ 657 (707)
T PRK01254 626 VPKGDRQRRLHKALLRYHDPANWPLIREALEA 657 (707)
T ss_pred ccCCHHHHHHHHHHhccCCccchHHHHHHHHh
Confidence 3445556677888877755 45666666654
No 160
>PHA00729 NTP-binding motif containing protein
Probab=35.82 E-value=1.9e+02 Score=22.80 Aligned_cols=24 Identities=13% Similarity=-0.011 Sum_probs=21.3
Q ss_pred CccEEEEeecChHHHHHHHhCCCc
Q 030234 73 KVDKVLNFAIDDAVLEERITGRWI 96 (181)
Q Consensus 73 ~p~~vi~L~~~~~~~~~Rl~~r~~ 96 (181)
..+.++++.++.+.+.+++..|..
T Consensus 118 R~~l~il~~ls~edL~~~Lr~Rg~ 141 (226)
T PHA00729 118 RVSAVIFTTPSPEDLAFYLREKGW 141 (226)
T ss_pred hCcEEEEecCCHHHHHHHHHhCCC
Confidence 478899999999999999999864
No 161
>PRK07667 uridine kinase; Provisional
Probab=35.63 E-value=41 Score=25.36 Aligned_cols=22 Identities=5% Similarity=-0.135 Sum_probs=19.6
Q ss_pred CccEEEEeecChHHHHHHHhCC
Q 030234 73 KVDKVLNFAIDDAVLEERITGR 94 (181)
Q Consensus 73 ~p~~vi~L~~~~~~~~~Rl~~r 94 (181)
..|.+|++++|.++.++|+..|
T Consensus 138 ~~d~~v~V~~~~~~~~~R~~~r 159 (193)
T PRK07667 138 FFHYMVYLDCPRETRFLRESEE 159 (193)
T ss_pred hceEEEEEECCHHHHHHHHhcc
Confidence 3699999999999999999865
No 162
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=35.34 E-value=29 Score=26.04 Aligned_cols=23 Identities=30% Similarity=0.622 Sum_probs=16.2
Q ss_pred CcCCCCCCccccCCCCCCCCCCCCCCCC
Q 030234 95 WIHPSSGRTYHTKFAPPKVPGVDDVTGE 122 (181)
Q Consensus 95 ~~~~~tg~~y~~~~~pp~~~~~~~~~~~ 122 (181)
++|+.||-+.-. .| +++|+.||.
T Consensus 135 ~vC~vCGy~~~g--e~---P~~CPiCga 157 (166)
T COG1592 135 WVCPVCGYTHEG--EA---PEVCPICGA 157 (166)
T ss_pred EEcCCCCCcccC--CC---CCcCCCCCC
Confidence 799999965433 33 467988885
No 163
>KOG2812 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.26 E-value=17 Score=30.60 Aligned_cols=43 Identities=16% Similarity=0.376 Sum_probs=36.3
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCCCCCeEecCCCC
Q 030234 12 LGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPR 55 (181)
Q Consensus 12 lg~~i~~~l~~G~~vpd~~v~~ll~~~l~~~~~~~G~iLdGfPr 55 (181)
-|..|.+|+..|+-||=-=-+.|-...|....| -|||.-|--.
T Consensus 330 EGaamA~Yv~~GkRIPRRGEIGLtSeEIa~fE~-~GYVMSGSRH 372 (426)
T KOG2812|consen 330 EGAAMAAYVAAGKRIPRRGEIGLTSEEIASFEC-VGYVMSGSRH 372 (426)
T ss_pred ccHHHHHHHHhcCcCCcccccCcCHHHhhhhhh-cceeeccchH
Confidence 378899999999999988888888888887775 6999988644
No 164
>PTZ00301 uridine kinase; Provisional
Probab=35.11 E-value=2e+02 Score=22.11 Aligned_cols=24 Identities=13% Similarity=0.007 Sum_probs=20.8
Q ss_pred CccEEEEeecChHHHHHHHhCCCc
Q 030234 73 KVDKVLNFAIDDAVLEERITGRWI 96 (181)
Q Consensus 73 ~p~~vi~L~~~~~~~~~Rl~~r~~ 96 (181)
..|+-|++++|.++.+.|...|-+
T Consensus 126 l~D~~ifvd~~~d~~~~Rr~~Rd~ 149 (210)
T PTZ00301 126 EMDCLIFVDTPLDICLIRRAKRDM 149 (210)
T ss_pred hCCEEEEEeCChhHHHHHHHhhhH
Confidence 368899999999999999988864
No 165
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=34.39 E-value=28 Score=25.31 Aligned_cols=32 Identities=16% Similarity=0.080 Sum_probs=22.1
Q ss_pred CcCCCCCCccccC----CCCCCCCCCCCCCCCCccc
Q 030234 95 WIHPSSGRTYHTK----FAPPKVPGVDDVTGEPLIQ 126 (181)
Q Consensus 95 ~~~~~tg~~y~~~----~~pp~~~~~~~~~~~~l~~ 126 (181)
.+||.||..|... ...|...-.|+.||+.|..
T Consensus 100 Y~Cp~C~~~y~~~ea~~~~d~~~~f~Cp~Cg~~l~~ 135 (147)
T smart00531 100 YKCPNCQSKYTFLEANQLLDMDGTFTCPRCGEELEE 135 (147)
T ss_pred EECcCCCCEeeHHHHHHhcCCCCcEECCCCCCEEEE
Confidence 5688999888752 2223333679999998864
No 166
>TIGR01110 mdcA malonate decarboxylase, alpha subunit. This model describes malonate decarboxylase alpha subunit, from both the water-soluble form as found in Klebsiella pneumoniae and the form couple to sodium ion pumping in Malonomonas rubra. Malonate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases. Essentially, it couples the energy derived from decarboxylation of a carboxylic acid substrate to move Na+ ion across the bilayer. Functional malonate decarboylase is a multi subunit protein. The alpha subunit enzymatically performs the transfer of malonate (substrate) to an acyl carrier protein subunit for subsequent decarboxylation, hence the name: acetyl-S-acyl carrier protein:malonate carrier protein-SH transferase.
Probab=33.25 E-value=80 Score=28.19 Aligned_cols=50 Identities=22% Similarity=0.321 Sum_probs=39.2
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHcCCCCCCCeEecCCCCCHHHHHHHHHHHH
Q 030234 14 IKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLE 68 (181)
Q Consensus 14 ~~i~~~l~~G~~vpd~~v~~ll~~~l~~~~~~~G~iLdGfPrt~~Qa~~l~~~l~ 68 (181)
..++.++..|+.||.+-++.++...|... .-+.|.|+ |..||.+|-..|.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~l~~~i~~G---drv~leg~--~q~~a~~l~~~l~ 62 (543)
T TIGR01110 13 NAANELFSDGKVVPTQNGVELLEAVIAPG---DRVVLEGN--NQKQADFLSRCLA 62 (543)
T ss_pred HHHHhhhcCCcEeeHHHHHHHHHHhCCCC---CEEEECCc--cccchHHHHhhHH
Confidence 34555666999999999999999888654 46788888 8899998876553
No 167
>PF11305 DUF3107: Protein of unknown function (DUF3107); InterPro: IPR021456 Some members in this family of proteins are annotated as ATP-binding proteins however this cannot be confirmed. Currently no function is known.
Probab=32.79 E-value=70 Score=20.62 Aligned_cols=23 Identities=22% Similarity=0.358 Sum_probs=19.5
Q ss_pred EEEEeCCCChHHHHHHHHHHhcC
Q 030234 159 VAQLHAEKPPQEVTSEVQKALSA 181 (181)
Q Consensus 159 l~~Ida~~~~~~v~~~i~~~l~~ 181 (181)
=+.|+.+++.++|.+.|.++|.+
T Consensus 13 El~ies~~s~dev~~~v~~Al~~ 35 (74)
T PF11305_consen 13 ELVIESDQSADEVEAAVTDALAD 35 (74)
T ss_pred eEEEecCCCHHHHHHHHHHHHhC
Confidence 36789999999999999988753
No 168
>PF07526 POX: Associated with HOX; InterPro: IPR006563 This domain in found exclusively in plant proteins, associated with HOX domains which may suggest these proteins are homeodomain transcription factors.
Probab=32.78 E-value=63 Score=23.45 Aligned_cols=25 Identities=12% Similarity=0.275 Sum_probs=22.4
Q ss_pred cHHHHHHHHHHHHHhcHHHHHHHhh
Q 030234 131 TAAVLKSRLEAFHKQTEPVIDYYSK 155 (181)
Q Consensus 131 ~~~~i~~Rl~~y~~~~~~l~~~y~~ 155 (181)
..+.+.+|++.|++++..|...|..
T Consensus 85 mL~eVd~RY~qY~~Qmq~VvssFe~ 109 (140)
T PF07526_consen 85 MLDEVDRRYRQYYDQMQAVVSSFEA 109 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3588999999999999999999975
No 169
>PF06856 DUF1251: Protein of unknown function (DUF1251); InterPro: IPR009661 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf17; it is a family of uncharacterised viral proteins.
Probab=32.77 E-value=29 Score=24.59 Aligned_cols=19 Identities=26% Similarity=0.642 Sum_probs=14.7
Q ss_pred CCCCCeEecCCCCCHHHHH
Q 030234 43 SCQKGFILDGFPRTEVQAQ 61 (181)
Q Consensus 43 ~~~~G~iLdGfPrt~~Qa~ 61 (181)
+.+++.++||||..-+..+
T Consensus 54 ~~~~~i~FDGF~d~~DE~~ 72 (120)
T PF06856_consen 54 DKQRPIVFDGFPDEDDEGK 72 (120)
T ss_pred CCCCceEECCCCCcccccc
Confidence 3458999999999865554
No 170
>TIGR02786 addB_alphas double-strand break repair protein AddB, alphaproteobacterial type. AddAB is a system well described in the Firmicutes as a replacement for RecBCD in many prokaryotes for the repair of double stranded break DNA damage. More recently, a distantly related gene pair conserved in many alphaproteobacteria was shown also to function in double-stranded break repair in Rhizobium etli. This family consists of AddB proteins of the alphaproteobacteial type.
Probab=32.64 E-value=2.6e+02 Score=27.14 Aligned_cols=66 Identities=9% Similarity=0.080 Sum_probs=43.8
Q ss_pred HHHHCCCCCCHHH----HHHHHHHHHcCCCCCCCeEecCCCC-CHHHHHHHHHHHHhcCCCccEEE----EeecChHH
Q 030234 18 EAMDKGELVSDDL----VVGIIDEAMKKPSCQKGFILDGFPR-TEVQAQKLDEMLEKQGKKVDKVL----NFAIDDAV 86 (181)
Q Consensus 18 ~~l~~G~~vpd~~----v~~ll~~~l~~~~~~~G~iLdGfPr-t~~Qa~~l~~~l~~~~~~p~~vi----~L~~~~~~ 86 (181)
+++.+...+..+- ++..+.+++...+...-+++|||=. |..|+..++.++. ..-..+| -|.+++..
T Consensus 184 ~~L~~~~~~d~~~r~~~~l~~la~~l~~~~~~~~viiaGftg~tp~~~~ll~al~~---~~~g~vVLPgldl~ld~~~ 258 (1021)
T TIGR02786 184 KRLAELGRSNPAARRNRLLRALAARWATNPPEGPVIAAGSTGSIPATADLLAVVAR---LPQGAVVLPGLDLDMDEEA 258 (1021)
T ss_pred HHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeCCCChHHHHHHHHHHHh---CCCCCEECCCCCCCCCHHH
Confidence 4455544666666 7788888887655456799999966 5777777776543 2333566 66677654
No 171
>KOG3698 consensus Hyaluronoglucosaminidase [Posttranslational modification, protein turnover, chaperones]
Probab=32.46 E-value=81 Score=28.67 Aligned_cols=42 Identities=24% Similarity=0.287 Sum_probs=35.8
Q ss_pred EecCC---CCCHHHHHHHHHHHHhcCCCccEEEEeecChHHHHHHHhCC
Q 030234 49 ILDGF---PRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGR 94 (181)
Q Consensus 49 iLdGf---Prt~~Qa~~l~~~l~~~~~~p~~vi~L~~~~~~~~~Rl~~r 94 (181)
|+.|| |-|.+|-+.|.+.++++|.. -+|..|.+....|..=|
T Consensus 21 VvEGFYGRPWt~EQRK~LFrrl~~~gl~----tYlYAPKDDyKHR~~WR 65 (891)
T KOG3698|consen 21 VVEGFYGRPWTPEQRKHLFRRLNQLGLT----TYLYAPKDDYKHRSLWR 65 (891)
T ss_pred eeccccCCCCCHHHHHHHHHHHHhcccc----eeeecccchhHHHHHHH
Confidence 67777 99999999999989888765 78999999999888755
No 172
>TIGR01206 lysW lysine biosynthesis protein LysW. This very small, poorly characterized protein has been shown essential in Thermus thermophilus for an unusual pathway of Lys biosynthesis from aspartate by way of alpha-aminoadipate (AAA) rather than diaminopimelate. It is found also in Deinococcus radiodurans and Pyrococcus horikoshii, which appear to share the AAA pathway.
Probab=32.04 E-value=31 Score=20.78 Aligned_cols=34 Identities=15% Similarity=-0.020 Sum_probs=18.7
Q ss_pred cCCCCCCccccCCCCCCCCCCCCCCCCCcccCCC
Q 030234 96 IHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKD 129 (181)
Q Consensus 96 ~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~~r~d 129 (181)
.||.||............--.|+.||..|...+.
T Consensus 4 ~CP~CG~~iev~~~~~GeiV~Cp~CGaeleVv~~ 37 (54)
T TIGR01206 4 ECPDCGAEIELENPELGELVICDECGAELEVVSL 37 (54)
T ss_pred CCCCCCCEEecCCCccCCEEeCCCCCCEEEEEeC
Confidence 5788887665432222222247778876654433
No 173
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=31.79 E-value=25 Score=26.01 Aligned_cols=43 Identities=16% Similarity=0.106 Sum_probs=23.5
Q ss_pred CcCCCCCCccccCCCCCCCCCCCCCCCCCcccCCCCcH---HHHHHHHH
Q 030234 95 WIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTA---AVLKSRLE 140 (181)
Q Consensus 95 ~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~~r~dd~~---~~i~~Rl~ 140 (181)
.+||.|+..|...--- ...-.|+.||+.|.. .|+. +.+++|+.
T Consensus 110 Y~Cp~c~~r~tf~eA~-~~~F~Cp~Cg~~L~~--~dn~~~i~~l~~~i~ 155 (158)
T TIGR00373 110 FICPNMCVRFTFNEAM-ELNFTCPRCGAMLDY--LDNSEAIEKLEEQIK 155 (158)
T ss_pred EECCCCCcEeeHHHHH-HcCCcCCCCCCEeee--ccCHHHHHHHHHHHH
Confidence 3577777666532100 124578999998863 3443 34555544
No 174
>PRK06547 hypothetical protein; Provisional
Probab=30.43 E-value=57 Score=24.30 Aligned_cols=20 Identities=20% Similarity=0.081 Sum_probs=18.6
Q ss_pred EEEEeecChHHHHHHHhCCC
Q 030234 76 KVLNFAIDDAVLEERITGRW 95 (181)
Q Consensus 76 ~vi~L~~~~~~~~~Rl~~r~ 95 (181)
++|+|++|.++..+|+..|-
T Consensus 120 ~~I~ld~~~~vr~~R~~~Rd 139 (172)
T PRK06547 120 LTVWLDGPEALRKERALARD 139 (172)
T ss_pred EEEEEECCHHHHHHHHHhcC
Confidence 89999999999999999873
No 175
>PRK00023 cmk cytidylate kinase; Provisional
Probab=29.74 E-value=2.7e+02 Score=21.59 Aligned_cols=22 Identities=14% Similarity=0.172 Sum_probs=18.1
Q ss_pred EEEEeCCC-ChHHHHHHHHHHhc
Q 030234 159 VAQLHAEK-PPQEVTSEVQKALS 180 (181)
Q Consensus 159 l~~Ida~~-~~~~v~~~i~~~l~ 180 (181)
.+.||.+. +++++.+.|.+.++
T Consensus 198 ~l~IDTs~l~~ee~v~~I~~~i~ 220 (225)
T PRK00023 198 ALLLDTSGLSIEEVVEKILALVE 220 (225)
T ss_pred EEEEECCCCCHHHHHHHHHHHHH
Confidence 58898775 99999999988764
No 176
>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2.7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....
Probab=29.03 E-value=2.8e+02 Score=21.68 Aligned_cols=112 Identities=21% Similarity=0.272 Sum_probs=56.0
Q ss_pred CChHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCccEEEEeecChHHHH
Q 030234 9 KTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLE 88 (181)
Q Consensus 9 ~t~lg~~i~~~l~~G~~vpd~~v~~ll~~~l~~~~~~~G~iLdGfPrt~~Qa~~l~~~l~~~~~~p~~vi~L~~~~~~~~ 88 (181)
..+-|.++++.+.. ..+.+++ .-|.+.+ .+--|+|+==-|.+.-+.|.+.+...++.+ ++|.--|+|+.++
T Consensus 68 ~n~~~~~~R~~~a~------~~l~dl~-~~l~~~~-G~VAI~DATN~T~~RR~~l~~~~~~~~~~v-lFIEsic~D~~ii 138 (222)
T PF01591_consen 68 DNEEAKKLREQIAK------EALEDLI-EWLQEEG-GQVAIFDATNSTRERRKMLVERFKEHGIKV-LFIESICDDPEII 138 (222)
T ss_dssp T-HHHHHHHHHHHH------HHHHHHH-HHHHTS---SEEEEES---SHHHHHHHHHHHHHTT-EE-EEEEEE---HHHH
T ss_pred CChHHHHHHHHHHH------HHHHHHH-HHHhcCC-CeEEEEeCCCCCHHHHHHHHHHHHHcCCcE-EEEEEEeCCHHHH
Confidence 34455555554432 2233333 3454332 245799999999999999988888877443 5666667887776
Q ss_pred HHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHHhcHHHH
Q 030234 89 ERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVI 150 (181)
Q Consensus 89 ~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~~r~dd~~~~i~~Rl~~y~~~~~~l~ 150 (181)
++-.....- ....|.. .-++...+-+.+|++.|.....|+-
T Consensus 139 ~~NI~~~~~--~spDY~~-------------------~~~e~A~~Df~~RI~~Ye~~YEpl~ 179 (222)
T PF01591_consen 139 ERNIREKKQ--NSPDYKG-------------------MDPEEAIEDFKKRIEHYEKVYEPLD 179 (222)
T ss_dssp HHHHHHHHT--TSGGGTT-------------------S-HHHHHHHHHHHHHHHHTT-----
T ss_pred HHHHHHHHc--CCccccc-------------------CCHHHHHHHHHHHHHhhcccccccc
Confidence 654433210 0011110 0112245678999999999999997
No 177
>PRK00955 hypothetical protein; Provisional
Probab=28.96 E-value=1.4e+02 Score=27.38 Aligned_cols=90 Identities=21% Similarity=0.300 Sum_probs=49.2
Q ss_pred CCeEecCCCC-CHHHHHHHHHHHHhcCCCccEEEEeecChHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCCCc
Q 030234 46 KGFILDGFPR-TEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPL 124 (181)
Q Consensus 46 ~G~iLdGfPr-t~~Qa~~l~~~l~~~~~~p~~vi~L~~~~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l 124 (181)
.++++-|||- |.+.++.+-+++.+.+..+..|..+.--.-+.... .|++..+|-. +++.
T Consensus 481 ~~yfIvGfPGETeEDf~et~eflkel~~~~~qV~~fTP~PGT~At~------------Myytg~dp~~--------~~~v 540 (620)
T PRK00955 481 VPYLMSSHPGSTLEDAIELAEYTKDLGYQPEQVQDFYPTPGTLSTT------------MYYTGLDPLT--------MEPV 540 (620)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHcCCCcceeeeeecCCCcchhh------------ccccCCCccc--------cCcC
Confidence 4678889998 88888888778877766654444444333333322 2444444411 1111
Q ss_pred ccCCCCcHHHHHHHHHHHHH--hcHHHHHHHhh
Q 030234 125 IQRKDDTAAVLKSRLEAFHK--QTEPVIDYYSK 155 (181)
Q Consensus 125 ~~r~dd~~~~i~~Rl~~y~~--~~~~l~~~y~~ 155 (181)
....+..+-.+++.+-.|+. +...+.+-...
T Consensus 541 ~v~k~~~ek~~qra~l~~~~~~~~~~~~~~l~~ 573 (620)
T PRK00955 541 YVPKTPKEKAMQRALLQYRKPENYDLVYEALKK 573 (620)
T ss_pred CCCCCHHHHHHHHHhhcccCccchhHHHHHHHh
Confidence 22233344556666666644 34556555543
No 178
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=28.87 E-value=50 Score=17.85 Aligned_cols=28 Identities=11% Similarity=0.003 Sum_probs=17.1
Q ss_pred cCCCCCCccccCCCCC-CCCCCCCCCCCC
Q 030234 96 IHPSSGRTYHTKFAPP-KVPGVDDVTGEP 123 (181)
Q Consensus 96 ~~~~tg~~y~~~~~pp-~~~~~~~~~~~~ 123 (181)
.|+.||..|....... .....|+.||+.
T Consensus 7 ~C~~Cg~~fe~~~~~~~~~~~~CP~Cg~~ 35 (41)
T smart00834 7 RCEDCGHTFEVLQKISDDPLATCPECGGD 35 (41)
T ss_pred EcCCCCCEEEEEEecCCCCCCCCCCCCCc
Confidence 4677888776543222 344568888874
No 179
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=28.77 E-value=1.2e+02 Score=17.38 Aligned_cols=27 Identities=15% Similarity=0.130 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 030234 11 PLGIKAKEAMDKGELVSDDLVVGIIDE 37 (181)
Q Consensus 11 ~lg~~i~~~l~~G~~vpd~~v~~ll~~ 37 (181)
++...+.++.++|-.+|++++..+++.
T Consensus 20 ~~~~~l~~l~~~g~~is~~l~~~~L~~ 46 (48)
T PF11848_consen 20 EVKPLLDRLQQAGFRISPKLIEEILRR 46 (48)
T ss_pred hHHHHHHHHHHcCcccCHHHHHHHHHH
Confidence 566678888889999999999888764
No 180
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=28.21 E-value=27 Score=18.87 Aligned_cols=30 Identities=7% Similarity=-0.050 Sum_probs=17.2
Q ss_pred cCCCCCCccccCCCCCCC---CCCCCCCCCCcc
Q 030234 96 IHPSSGRTYHTKFAPPKV---PGVDDVTGEPLI 125 (181)
Q Consensus 96 ~~~~tg~~y~~~~~pp~~---~~~~~~~~~~l~ 125 (181)
.||.||..|.....+-.. .-.|..|+..+.
T Consensus 4 ~CP~C~~~~~v~~~~~~~~~~~v~C~~C~~~~~ 36 (38)
T TIGR02098 4 QCPNCKTSFRVVDSQLGANGGKVRCGKCGHVWY 36 (38)
T ss_pred ECCCCCCEEEeCHHHcCCCCCEEECCCCCCEEE
Confidence 578888877765432221 235666776543
No 181
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=27.86 E-value=2.9e+02 Score=21.35 Aligned_cols=38 Identities=16% Similarity=0.130 Sum_probs=25.5
Q ss_pred CCCeEecCCC-CCHHHHHHHHHHHHhcCCCccEEEEeecChHHHHHHHhCC
Q 030234 45 QKGFILDGFP-RTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGR 94 (181)
Q Consensus 45 ~~G~iLdGfP-rt~~Qa~~l~~~l~~~~~~p~~vi~L~~~~~~~~~Rl~~r 94 (181)
..|||+||-= -|. . + ..-++.|+|++|.++-.+|...|
T Consensus 120 ~~~~Vi~Gr~~~~~----v----~----~~a~~~ifl~a~~~~Ra~Rr~~~ 158 (217)
T TIGR00017 120 NDGIIADGRDIGTV----V----F----PNAEVKIFLDASVEERAKRRYKQ 158 (217)
T ss_pred cCCEEEEEcCcceE----E----e----CCCCEEEEEECCHHHHHHHHHHH
Confidence 3689999972 111 0 0 12458999999999877776655
No 182
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=27.78 E-value=2.1e+02 Score=23.66 Aligned_cols=80 Identities=15% Similarity=0.211 Sum_probs=45.2
Q ss_pred HHhcCChHHHHHHHHHHCCCCCC----HHHHHHHHHHHHcCCCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCccEEEEe
Q 030234 5 AVAAKTPLGIKAKEAMDKGELVS----DDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNF 80 (181)
Q Consensus 5 ~i~~~t~lg~~i~~~l~~G~~vp----d~~v~~ll~~~l~~~~~~~G~iLdGfPrt~~Qa~~l~~~l~~~~~~p~~vi~L 80 (181)
....+..++......+..|..|= ...+.++|...-.....=+-||++++|+.. ...+-+.|.++|+. .++..
T Consensus 102 ~~~a~~~ia~~~a~~i~dg~~IlTh~~S~~v~~~l~~A~~~~k~~~V~VtESRP~~e--G~~~ak~L~~~gI~--~~~I~ 177 (301)
T COG1184 102 VEKAKERIAEIGAERIHDGDVILTHSFSKTVLEVLKTAADRGKRFKVIVTESRPRGE--GRIMAKELRQSGIP--VTVIV 177 (301)
T ss_pred HHHHHHHHHHHHHhhccCCCEEEEecCcHHHHHHHHHhhhcCCceEEEEEcCCCcch--HHHHHHHHHHcCCc--eEEEe
Confidence 33455667777777777776653 334555555443322112679999999965 44444566777743 44444
Q ss_pred ecChHHHH
Q 030234 81 AIDDAVLE 88 (181)
Q Consensus 81 ~~~~~~~~ 88 (181)
|-.--..+
T Consensus 178 Dsa~~~~~ 185 (301)
T COG1184 178 DSAVGAFM 185 (301)
T ss_pred chHHHHHH
Confidence 44333333
No 183
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=27.60 E-value=25 Score=22.58 Aligned_cols=49 Identities=14% Similarity=0.206 Sum_probs=28.3
Q ss_pred HHHHHHHHcCCCC-CCC-eEecCCCCC-HHHHHHHHHHHHhcCCCccEEEEee
Q 030234 32 VGIIDEAMKKPSC-QKG-FILDGFPRT-EVQAQKLDEMLEKQGKKVDKVLNFA 81 (181)
Q Consensus 32 ~~ll~~~l~~~~~-~~G-~iLdGfPrt-~~Qa~~l~~~l~~~~~~p~~vi~L~ 81 (181)
+.-|.+.+..... ... -++.+|||. ..+. .+..-|...|+.|..+++++
T Consensus 27 l~~v~~fV~~~~~~~~~f~L~t~fPrk~~~~~-d~~~TL~elgL~Psa~L~v~ 78 (79)
T cd01772 27 LAAVRLFVELNTGNGGPFTLMTPFPRKVFTED-DMEKPLQELGLVPSAVLIVT 78 (79)
T ss_pred HHHHHHHHHHcCCCCCCEEEEeCCCCeECCcc-cccCCHHHCCCCCceEEEEe
Confidence 3344555543322 133 488999995 3222 12224556789999998875
No 184
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=27.26 E-value=1e+02 Score=24.88 Aligned_cols=22 Identities=23% Similarity=0.126 Sum_probs=17.5
Q ss_pred CccEEEEeecChHHHHHHHhCC
Q 030234 73 KVDKVLNFAIDDAVLEERITGR 94 (181)
Q Consensus 73 ~p~~vi~L~~~~~~~~~Rl~~r 94 (181)
..|++|+++++.++.+.|...|
T Consensus 115 ~~D~~I~vd~~~e~r~~r~i~R 136 (273)
T cd02026 115 LLDFSVYLDISDEVKFAWKIQR 136 (273)
T ss_pred hccEEEEEECChhHHHHHHHHH
Confidence 3689999999999986665544
No 185
>smart00574 POX domain associated with HOX domains.
Probab=26.57 E-value=99 Score=22.51 Aligned_cols=25 Identities=12% Similarity=0.317 Sum_probs=22.1
Q ss_pred cHHHHHHHHHHHHHhcHHHHHHHhh
Q 030234 131 TAAVLKSRLEAFHKQTEPVIDYYSK 155 (181)
Q Consensus 131 ~~~~i~~Rl~~y~~~~~~l~~~y~~ 155 (181)
..+.+.+|++.|.+++..|...|..
T Consensus 85 mL~eVd~RY~qY~~qmq~v~ssFe~ 109 (140)
T smart00574 85 MLEEVDRRYKHYYEQMQTVVSSFDQ 109 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3478999999999999999999975
No 186
>PHA03134 thymidine kinase; Provisional
Probab=26.34 E-value=2.2e+02 Score=24.01 Aligned_cols=21 Identities=10% Similarity=0.120 Sum_probs=19.5
Q ss_pred cEEEEeecChHHHHHHHhCCC
Q 030234 75 DKVLNFAIDDAVLEERITGRW 95 (181)
Q Consensus 75 ~~vi~L~~~~~~~~~Rl~~r~ 95 (181)
+.+|+++++.++..+|+..|.
T Consensus 165 ~niVl~~l~~~e~~~Rl~~R~ 185 (340)
T PHA03134 165 GNLVVTTLNPDEHLRRLRARA 185 (340)
T ss_pred CeEEEEeCCHHHHHHHHHHcC
Confidence 789999999999999999885
No 187
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=26.06 E-value=28 Score=20.29 Aligned_cols=14 Identities=21% Similarity=0.444 Sum_probs=10.4
Q ss_pred CcCCCCCCccccCC
Q 030234 95 WIHPSSGRTYHTKF 108 (181)
Q Consensus 95 ~~~~~tg~~y~~~~ 108 (181)
..|+.||-+|+...
T Consensus 2 y~C~~CgyvYd~~~ 15 (47)
T PF00301_consen 2 YQCPVCGYVYDPEK 15 (47)
T ss_dssp EEETTTSBEEETTT
T ss_pred cCCCCCCEEEcCCc
Confidence 45778888888754
No 188
>COG4530 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.99 E-value=52 Score=22.96 Aligned_cols=29 Identities=24% Similarity=0.408 Sum_probs=17.7
Q ss_pred CCCcCCCCCCccccCCCCCCCCCCCCCCCCCc
Q 030234 93 GRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPL 124 (181)
Q Consensus 93 ~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l 124 (181)
..++||.||+.|.-....| .+|+-||..+
T Consensus 8 tKridPetg~KFYDLNrdP---iVsPytG~s~ 36 (129)
T COG4530 8 TKRIDPETGKKFYDLNRDP---IVSPYTGKSY 36 (129)
T ss_pred ccccCccccchhhccCCCc---cccCcccccc
Confidence 4578999998665444333 3455566543
No 189
>TIGR00155 pqiA_fam integral membrane protein, PqiA family. This family consists of uncharacterized predicted integral membrane proteins found, so far, only in the Proteobacteria. Of two members in E. coli, one is induced by paraquat and is designated PqiA, paraquat-inducible protein A.
Probab=25.92 E-value=94 Score=26.71 Aligned_cols=34 Identities=18% Similarity=0.144 Sum_probs=25.0
Q ss_pred CcCCCCCCccccCCCCCCCCCCCCCCCCCcccCCCCcHH
Q 030234 95 WIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAA 133 (181)
Q Consensus 95 ~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~~r~dd~~~ 133 (181)
..|+.||... +|.....|++||..|..|...+.+
T Consensus 216 ~~C~~Cd~~~-----~~~~~a~CpRC~~~L~~~~~~s~~ 249 (403)
T TIGR00155 216 RSCSACHTTI-----LPAQEPVCPRCSTPLYVRRRNSLQ 249 (403)
T ss_pred CcCCCCCCcc-----CCCCCcCCcCCCCcccCCCCCCHH
Confidence 4488888643 455567899999999888776644
No 190
>PF09107 SelB-wing_3: Elongation factor SelB, winged helix ; InterPro: IPR015191 This entry represents a domain with a winged helix-type fold, which consists of a closed 3-helical bundle with a right-handed twist, and a small beta-sheet wing []. Different winged helix domains share a common structure, but can differ in sequence. This entry is designated "type 3". The winged helix motif is involved in both DNA and RNA binding. In the elongation factor SelB, the winged helix domains recognise RNA, allowing the complex to wrap around the small ribosomal subunit. In bacteria, the incorporation of the amino acid selenocysteine into proteins requires elongation factor SelB, which binds both transfer RNA (tRNA) and mRNA. SelB binds to an mRNA hairpin formed by the selenocysteine insertion sequence (SECIS) with extremely high specificity []. ; GO: 0003723 RNA binding, 0003746 translation elongation factor activity, 0005525 GTP binding, 0001514 selenocysteine incorporation, 0005737 cytoplasm; PDB: 2PJP_A 2UWM_A 1WSU_B 1LVA_A 2PLY_A.
Probab=25.76 E-value=1.2e+02 Score=17.79 Aligned_cols=32 Identities=25% Similarity=0.477 Sum_probs=25.3
Q ss_pred cHHHHHHHHHHHHHhcHHHHHHHhhcCCEEEE
Q 030234 131 TAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQL 162 (181)
Q Consensus 131 ~~~~i~~Rl~~y~~~~~~l~~~y~~~~~l~~I 162 (181)
+...++..+..=++.+-|+++||...|.....
T Consensus 12 tv~~~rd~lg~sRK~ai~lLE~lD~~g~T~R~ 43 (50)
T PF09107_consen 12 TVAEFRDLLGLSRKYAIPLLEYLDREGITRRV 43 (50)
T ss_dssp EHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEE
T ss_pred cHHHHHHHHCccHHHHHHHHHHHhccCCEEEe
Confidence 46678888888889999999999988766554
No 191
>PF13878 zf-C2H2_3: zinc-finger of acetyl-transferase ESCO
Probab=25.46 E-value=48 Score=18.56 Aligned_cols=15 Identities=27% Similarity=0.421 Sum_probs=12.0
Q ss_pred hCCCcCCCCCCcccc
Q 030234 92 TGRWIHPSSGRTYHT 106 (181)
Q Consensus 92 ~~r~~~~~tg~~y~~ 106 (181)
.+...|+.||..|+.
T Consensus 11 ~~~~~C~~CgM~Y~~ 25 (41)
T PF13878_consen 11 FGATTCPTCGMLYSP 25 (41)
T ss_pred cCCcCCCCCCCEECC
Confidence 356789999999874
No 192
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=25.07 E-value=53 Score=24.06 Aligned_cols=34 Identities=15% Similarity=0.176 Sum_probs=22.1
Q ss_pred hCCCcCCCCCCccccCCCCCCCCCCCCCCCCCcccC
Q 030234 92 TGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQR 127 (181)
Q Consensus 92 ~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~~r 127 (181)
.|..+|..||...+. ..|..-..|+.||.....|
T Consensus 110 ~G~l~C~~Cg~~~~~--~~~~~l~~Cp~C~~~~F~R 143 (146)
T PF07295_consen 110 PGTLVCENCGHEVEL--THPERLPPCPKCGHTEFTR 143 (146)
T ss_pred CceEecccCCCEEEe--cCCCcCCCCCCCCCCeeee
Confidence 466778888854443 3355555688999766655
No 193
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=24.90 E-value=2.1e+02 Score=22.51 Aligned_cols=42 Identities=19% Similarity=0.171 Sum_probs=29.5
Q ss_pred CCCeEecCC-CCCHHHHHHHHHHHHhcCCCccEEEEeecChHHHHHHHhCCCc
Q 030234 45 QKGFILDGF-PRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWI 96 (181)
Q Consensus 45 ~~G~iLdGf-Prt~~Qa~~l~~~l~~~~~~p~~vi~L~~~~~~~~~Rl~~r~~ 96 (181)
.+-+|++|+ +-+- +.+. -..|+-|+++++.++.+.|...|.+
T Consensus 108 ~~VVIvEGi~~l~d---~~lr-------~~~d~kIfvdtd~D~RliRri~RD~ 150 (218)
T COG0572 108 NDVVIVEGILLLYD---ERLR-------DLMDLKIFVDTDADVRLIRRIKRDV 150 (218)
T ss_pred CcEEEEeccccccc---HHHH-------hhcCEEEEEeCCccHHHHHHHHHHH
Confidence 356899998 3333 1221 1368999999999998888877754
No 194
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=24.47 E-value=3.2e+02 Score=20.74 Aligned_cols=24 Identities=25% Similarity=0.125 Sum_probs=21.2
Q ss_pred CCccEEEEeecChHHHHHHHhCCC
Q 030234 72 KKVDKVLNFAIDDAVLEERITGRW 95 (181)
Q Consensus 72 ~~p~~vi~L~~~~~~~~~Rl~~r~ 95 (181)
..+|+-|+|..|-++=.+|++.|-
T Consensus 89 ~~adlkI~L~Apl~vRa~Ria~RE 112 (179)
T COG1102 89 EYADLKIWLKAPLEVRAERIAKRE 112 (179)
T ss_pred cccceEEEEeCcHHHHHHHHHHhc
Confidence 358999999999999999999873
No 195
>PRK05541 adenylylsulfate kinase; Provisional
Probab=24.26 E-value=70 Score=23.40 Aligned_cols=22 Identities=14% Similarity=-0.159 Sum_probs=18.1
Q ss_pred CCccEEEEeecChHHHHHHHhC
Q 030234 72 KKVDKVLNFAIDDAVLEERITG 93 (181)
Q Consensus 72 ~~p~~vi~L~~~~~~~~~Rl~~ 93 (181)
..+..+|+|++|.+++.+|...
T Consensus 100 ~~~~~~v~l~~~~e~~~~R~~~ 121 (176)
T PRK05541 100 LPNYFEVYLKCDMEELIRRDQK 121 (176)
T ss_pred cCCeEEEEEeCCHHHHHHhchh
Confidence 3456899999999999999753
No 196
>PF10798 YmgB: Biofilm development protein YmgB/AriR; InterPro: IPR024753 YmgB is part of the three gene cluster ymgABC which has a role in biofilm development and stability. YmgB represses biofilm formation in rich medium containing glucose, decreases cellular motility and also protects the cell from acid, which indicates that YmgB has an important function in acid-resistance []. YmgB binds as a dimer to genes which are important for biofilm formation via a ligand. Due to its important function in acid resistance it is also known as AriR (regulator of acid resistance influenced by indole) [].; GO: 0042710 biofilm formation, 0071229 cellular response to acid; PDB: 2OXL_B.
Probab=24.14 E-value=1.8e+02 Score=17.85 Aligned_cols=33 Identities=18% Similarity=0.271 Sum_probs=24.2
Q ss_pred ChHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCC
Q 030234 10 TPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKP 42 (181)
Q Consensus 10 t~lg~~i~~~l~~G~~vpd~~v~~ll~~~l~~~ 42 (181)
.-+|.-+.+.+..|..|...-++-=+..+|...
T Consensus 5 ~vL~~iv~ell~~g~~vsnKaII~~LI~~LE~e 37 (61)
T PF10798_consen 5 EVLGAIVRELLASGGHVSNKAIILKLIHRLESE 37 (61)
T ss_dssp HHHHHHHHHHHHTT---SHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcc
Confidence 358999999999999999988887777788654
No 197
>PF11202 PRTase_1: Phosphoribosyl transferase (PRTase); InterPro: IPR011215 This is a family of uncharacterised bacterial proteins.
Probab=24.01 E-value=3.9e+02 Score=21.57 Aligned_cols=75 Identities=16% Similarity=0.232 Sum_probs=43.7
Q ss_pred hcCChHHHHHHHHHHC---CCCCCHHHH---------HHHHHHHHcCCCCCCCeEecCCCCCHHHHHHHHHHHH----hc
Q 030234 7 AAKTPLGIKAKEAMDK---GELVSDDLV---------VGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLE----KQ 70 (181)
Q Consensus 7 ~~~t~lg~~i~~~l~~---G~~vpd~~v---------~~ll~~~l~~~~~~~G~iLdGfPrt~~Qa~~l~~~l~----~~ 70 (181)
..+||+|-.++.++.. |..+|---+ ...|..-++.++...-..+||.--.=.=...|.+.+. ..
T Consensus 95 RAGtPiGVLlkR~l~~~~~g~~~~HYsISIIRdRGID~~AL~~I~~~H~~~~ivFVDGWTGKGaI~~eL~~al~~~~~~~ 174 (257)
T PF11202_consen 95 RAGTPIGVLLKRYLRRMKYGLDLPHYSISIIRDRGIDENALRYILARHPPESIVFVDGWTGKGAITRELKKALAAFNARY 174 (257)
T ss_pred ccCCcHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCHHHHHHHHHhCCCcceEEEecCccccHHHHHHHHHHHHHHhhc
Confidence 4799999999999987 666552211 1122222445554556788998764443334443342 23
Q ss_pred C--CCccEEEEee
Q 030234 71 G--KKVDKVLNFA 81 (181)
Q Consensus 71 ~--~~p~~vi~L~ 81 (181)
+ ..|+++|.=|
T Consensus 175 ~~~~~~~LaVLaD 187 (257)
T PF11202_consen 175 GTRLSPDLAVLAD 187 (257)
T ss_pred CCCCCCCeEEEec
Confidence 3 6777777655
No 198
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=24.00 E-value=3.3e+02 Score=20.79 Aligned_cols=21 Identities=19% Similarity=0.156 Sum_probs=18.1
Q ss_pred CCccEEEEeecChHHHHHHHh
Q 030234 72 KKVDKVLNFAIDDAVLEERIT 92 (181)
Q Consensus 72 ~~p~~vi~L~~~~~~~~~Rl~ 92 (181)
+.||.++.|+.+.+.++.|..
T Consensus 108 l~pd~ivllEaDp~~Il~RR~ 128 (189)
T COG2019 108 LNPDVIVLLEADPEEILERRL 128 (189)
T ss_pred cCCCEEEEEeCCHHHHHHHHh
Confidence 589999999999988887755
No 199
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family. The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.
Probab=23.87 E-value=2.5e+02 Score=23.00 Aligned_cols=82 Identities=13% Similarity=0.172 Sum_probs=49.0
Q ss_pred HhcCChHHHHHHHHHHCCCCC----CHHHHHHHHHHHHcCCCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCccEEEEee
Q 030234 6 VAAKTPLGIKAKEAMDKGELV----SDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFA 81 (181)
Q Consensus 6 i~~~t~lg~~i~~~l~~G~~v----pd~~v~~ll~~~l~~~~~~~G~iLdGfPrt~~Qa~~l~~~l~~~~~~p~~vi~L~ 81 (181)
......++....+++..|..| ....+..+|+....+...-+-||.++.|.... ..+-..|.+.|+ +..+..+
T Consensus 99 ~~a~~~I~~~a~~~i~~g~~ILT~~~S~tv~~~l~~a~~~~~~f~V~v~EsrP~~~G--~~~a~~L~~~gI--~vtlI~D 174 (301)
T TIGR00511 99 DKAQERIGEIGAKRIRDGDVVMTHCNSEAALSVIKTAFEQGKDIEVIATETRPRKQG--HITAKELRDYGI--PVTLIVD 174 (301)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEEECCcHHHHHHHHHHHHcCCcEEEEEecCCCcchH--HHHHHHHHHCCC--CEEEEeh
Confidence 344556777777777777632 34667777766655433336799999998754 333334566665 3445555
Q ss_pred cChHHHHHHH
Q 030234 82 IDDAVLEERI 91 (181)
Q Consensus 82 ~~~~~~~~Rl 91 (181)
-.--.++.+.
T Consensus 175 sa~~~~m~~v 184 (301)
T TIGR00511 175 SAVRYFMKEV 184 (301)
T ss_pred hHHHHHHHhC
Confidence 5444455543
No 200
>PRK05756 pyridoxamine kinase; Validated
Probab=23.51 E-value=3e+02 Score=21.95 Aligned_cols=59 Identities=8% Similarity=0.169 Sum_probs=38.1
Q ss_pred CCCCCCHHHHHHHHHHHHcCCCC--CCCeEecCCCCCHHHHHHHHHHHHhcC-CCccEEEEee
Q 030234 22 KGELVSDDLVVGIIDEAMKKPSC--QKGFILDGFPRTEVQAQKLDEMLEKQG-KKVDKVLNFA 81 (181)
Q Consensus 22 ~G~~vpd~~v~~ll~~~l~~~~~--~~G~iLdGfPrt~~Qa~~l~~~l~~~~-~~p~~vi~L~ 81 (181)
.|..++++.+.+++.. +...+. .-+.|+-||--+..+++.+.+++.... ..|+.++++|
T Consensus 50 ~g~~~~~~~~~~~~~~-~~~~~~l~~~~~v~~G~l~~~~~~~~v~~~i~~~k~~~~~~~~v~D 111 (286)
T PRK05756 50 TGCVMPPSHLTEIVQG-IADIGWLGECDAVLSGYLGSAEQGEAILDAVRRVKAANPQALYFCD 111 (286)
T ss_pred cCeeCCHHHHHHHHHH-HHhcCccccCCEEEECCCCCHHHHHHHHHHHHHHHHhCCCceEEEC
Confidence 5677788777777765 433221 345889999999999988887775432 2344444444
No 201
>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.
Probab=23.30 E-value=27 Score=19.61 Aligned_cols=30 Identities=23% Similarity=0.189 Sum_probs=16.1
Q ss_pred cCCCCCCccccCCCCCCCCCCCCCCCCCccc
Q 030234 96 IHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQ 126 (181)
Q Consensus 96 ~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~~ 126 (181)
.||.||..+ ..+++-.-.-+|..||..+..
T Consensus 2 ~Cp~Cg~~~-~~~D~~~g~~vC~~CG~Vl~e 31 (43)
T PF08271_consen 2 KCPNCGSKE-IVFDPERGELVCPNCGLVLEE 31 (43)
T ss_dssp SBTTTSSSE-EEEETTTTEEEETTT-BBEE-
T ss_pred CCcCCcCCc-eEEcCCCCeEECCCCCCEeec
Confidence 467777655 444444444467777755543
No 202
>TIGR01935 NOT-MenG RraA famliy. This model was initially classified as a "hypothetical equivalog" expressing the tentative hypothesis that all members might have the same function as the E. coli enzyme. Considering the second clade of enterobacterial sequences within this family, that appears to be less tenable. The function of these sequences outside of the narrow RraA equivalog model (TIGR02998) remains obscure. All of these were initially annotated as MenG, AKA S-adenosylmethionine: 2-demethylmenaquinone methyltransferase (EC 2.1.-.-). See the references characterizing this as a case of transitive annotation error in the case of the E. coli protein.
Probab=23.29 E-value=73 Score=23.38 Aligned_cols=34 Identities=15% Similarity=0.220 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHcCCCCCCCeEecCCCCCHHHHHHH
Q 030234 29 DLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKL 63 (181)
Q Consensus 29 ~~v~~ll~~~l~~~~~~~G~iLdGfPrt~~Qa~~l 63 (181)
.++-+++..+.+... -.|+|+||+-|..++...+
T Consensus 68 a~~G~~~~~~a~~~G-~~G~VidG~vRD~~~i~~~ 101 (150)
T TIGR01935 68 ALLGDNLAVLAEENG-WEGVIVNGCVRDVAELAGM 101 (150)
T ss_pred EeehHHHHHHHHHCC-CEEEEEeecccCHHHHhhC
Confidence 345566666555443 4799999999999988753
No 203
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=23.21 E-value=79 Score=16.87 Aligned_cols=24 Identities=21% Similarity=0.499 Sum_probs=16.0
Q ss_pred CcCCCCCCccccCCCCCCCCCCCCCCCC
Q 030234 95 WIHPSSGRTYHTKFAPPKVPGVDDVTGE 122 (181)
Q Consensus 95 ~~~~~tg~~y~~~~~pp~~~~~~~~~~~ 122 (181)
++|..||.+|... .|| ..|+.||.
T Consensus 3 ~~C~~CG~i~~g~-~~p---~~CP~Cg~ 26 (34)
T cd00729 3 WVCPVCGYIHEGE-EAP---EKCPICGA 26 (34)
T ss_pred EECCCCCCEeECC-cCC---CcCcCCCC
Confidence 5688899877643 233 47878775
No 204
>PF09821 AAA_assoc_C: C-terminal AAA-associated domain; InterPro: IPR018632 Members of this family are found in various prokaryotic ABC transporters, predominantly involved in nitrate, sulphonate and bicarbonate translocation.
Probab=22.31 E-value=1.9e+02 Score=20.34 Aligned_cols=40 Identities=8% Similarity=0.335 Sum_probs=31.5
Q ss_pred ChhHHHhcCChHHHHHHHHHHC--CCCCCHHHHHHHHHHHHc
Q 030234 1 MLRAAVAAKTPLGIKAKEAMDK--GELVSDDLVVGIIDEAMK 40 (181)
Q Consensus 1 llr~~i~~~t~lg~~i~~~l~~--G~~vpd~~v~~ll~~~l~ 40 (181)
+||+.+.+.-|+-..|...+.+ +..+|.+.+.+.+...+.
T Consensus 54 if~~~l~~~~Pl~~~I~~~L~~~~~~~~~~~~~~~~L~~~~~ 95 (120)
T PF09821_consen 54 IFREQLLRHVPLAAHIRRVLRERPNHRLPEERFLDELEDHFS 95 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCC
Confidence 4677777778888888888875 488999999998887663
No 205
>PF01348 Intron_maturas2: Type II intron maturase; InterPro: IPR002866 Group II introns use intron-encoded reverse transcriptase, maturase and DNA endonuclease activities for site-specific insertion into DNA []. Although this type of intron is self splicing in vitro they require a maturase protein for splicing in vivo. These introns are found in plant organelles []. Maturases in higher plants are encoded for in the nuclear genes [] but are otherwise encoded by organellar introns. The Maturase-related, N-terminal domain is found in plant potential maturases, which probably assists in the splicing of chloroplast group II introns []. The function of this region is, however, unknown It has been shown that a specific region of the aI2 intron is needed for the maturase function []. This C-terminal region was found to be conserved in group II introns and called domain X [].; GO: 0006397 mRNA processing, 0009507 chloroplast
Probab=22.30 E-value=1.3e+02 Score=21.79 Aligned_cols=56 Identities=13% Similarity=0.289 Sum_probs=37.0
Q ss_pred EEeecChHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHHhcHHHHHHHh
Q 030234 78 LNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYS 154 (181)
Q Consensus 78 i~L~~~~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~~r~dd~~~~i~~Rl~~y~~~~~~l~~~y~ 154 (181)
+.|.+|-+.+++++...+.+...|..-| ...|+.. ++.++ +..|+..+..+.+||.
T Consensus 4 i~l~~P~~~ii~kL~~~g~~~~~~~P~~---------------~~~l~~~--~d~eI----i~~yn~~~rg~~nYY~ 59 (146)
T PF01348_consen 4 IQLYAPIEKIIKKLRKKGFCKIKGKPIS---------------RSRLINL--DDLEI----INRYNSEIRGLYNYYS 59 (146)
T ss_pred EEEEeeHHHHHHHHHhCCceeCcCCccc---------------ceeeecc--chhhH----HHHHHHHhhhhhcccc
Confidence 6789999999999998887655432111 0112222 22222 4689999999999996
No 206
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=22.05 E-value=1.2e+02 Score=20.06 Aligned_cols=38 Identities=16% Similarity=0.333 Sum_probs=24.3
Q ss_pred HHHHHHHHHHcCCCC------CCCeEecCCCCCHHHHHHHHHHHHhc
Q 030234 30 LVVGIIDEAMKKPSC------QKGFILDGFPRTEVQAQKLDEMLEKQ 70 (181)
Q Consensus 30 ~v~~ll~~~l~~~~~------~~G~iLdGfPrt~~Qa~~l~~~l~~~ 70 (181)
++-++|..++++.-. ++- -|+|-|..||+.+..++.+.
T Consensus 3 i~qqiVn~Kln~iT~~eLlkyskq---y~i~it~~QA~~I~~~lr~k 46 (85)
T PF11116_consen 3 IIQQIVNQKLNNITAKELLKYSKQ---YNISITKKQAEQIANILRGK 46 (85)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHH---hCCCCCHHHHHHHHHHHhcC
Confidence 344566666655321 111 26799999999998887644
No 207
>PF10107 Endonuc_Holl: Endonuclease related to archaeal Holliday junction resolvase; InterPro: IPR019287 This domain is found in various predicted bacterial endonucleases which are distantly related to archaeal Holliday junction resolvases.
Probab=22.00 E-value=59 Score=24.07 Aligned_cols=29 Identities=31% Similarity=0.424 Sum_probs=23.9
Q ss_pred EecCCCCCHHHHHHHHHHHHhcCCCccEEEEeecCh
Q 030234 49 ILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDD 84 (181)
Q Consensus 49 iLdGfPrt~~Qa~~l~~~l~~~~~~p~~vi~L~~~~ 84 (181)
+|-+||-+...|.+| |.++|+|++=-+++
T Consensus 85 ~lp~F~ynP~D~RFl-------G~PVD~IvF~Gls~ 113 (156)
T PF10107_consen 85 FLPEFPYNPKDARFL-------GSPVDFIVFDGLSD 113 (156)
T ss_pred ccCCCCCChhhheec-------CCCceEEEEcCCCC
Confidence 569999999999974 67889888777766
No 208
>PLN02348 phosphoribulokinase
Probab=21.93 E-value=1.6e+02 Score=25.31 Aligned_cols=24 Identities=21% Similarity=0.089 Sum_probs=19.9
Q ss_pred CccEEEEeecChHHHHHHHhCCCc
Q 030234 73 KVDKVLNFAIDDAVLEERITGRWI 96 (181)
Q Consensus 73 ~p~~vi~L~~~~~~~~~Rl~~r~~ 96 (181)
..|+.|+++++++..+.|...|.+
T Consensus 182 l~D~~IyVd~~~dvrl~RRI~RD~ 205 (395)
T PLN02348 182 LLDFSIYLDISDDVKFAWKIQRDM 205 (395)
T ss_pred cCcEEEEEECCHHHHHHHHHHhhH
Confidence 468999999999998888777753
No 209
>KOG0707 consensus Guanylate kinase [Nucleotide transport and metabolism]
Probab=21.15 E-value=2.1e+02 Score=22.66 Aligned_cols=54 Identities=19% Similarity=0.139 Sum_probs=31.8
Q ss_pred CcccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCCEEEEeCCCChHHHHHHHHHHh
Q 030234 123 PLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKAL 179 (181)
Q Consensus 123 ~l~~r~dd~~~~i~~Rl~~y~~~~~~l~~~y~~~~~l~~Ida~~~~~~v~~~i~~~l 179 (181)
||-.|-.++.+.+.+|+..=...+....+-+.- -+..+++ .+.++.+..+...+
T Consensus 166 rl~~rgte~~~~l~~r~~sa~~e~~~~~~~g~~--d~~~~ns-~~lee~~kel~~~~ 219 (231)
T KOG0707|consen 166 RLRARGTETEESLLKRLKSAEEEFEILENSGSF--DLVIVNS-DRLEEAYKELEIFI 219 (231)
T ss_pred HhhccCcchHHHHHHHHHhhhhhhccccCCccc--cceecCC-Cchhhhhhhhhhhh
Confidence 344455567888888888444455555543321 2334444 67788877776554
No 210
>PRK09372 ribonuclease activity regulator protein RraA; Provisional
Probab=21.14 E-value=92 Score=23.07 Aligned_cols=33 Identities=21% Similarity=0.219 Sum_probs=23.5
Q ss_pred HHHHHHHHHHcCCCCCCCeEecCCCCCHHHHHHH
Q 030234 30 LVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKL 63 (181)
Q Consensus 30 ~v~~ll~~~l~~~~~~~G~iLdGfPrt~~Qa~~l 63 (181)
++-+++..+.+... -.|+|+||.-|..+|...+
T Consensus 73 ~~G~~~~~~a~~~G-~~G~VidG~vRD~~~i~~~ 105 (159)
T PRK09372 73 LVGDNLAELAVDNG-WEGIVVYGCVRDVDELAEL 105 (159)
T ss_pred eehHHHHHHHHHcC-CeEEEecccccCHHHHhhC
Confidence 44556655555443 4799999999999998753
No 211
>PRK15103 paraquat-inducible membrane protein A; Provisional
Probab=21.09 E-value=1.3e+02 Score=25.98 Aligned_cols=33 Identities=9% Similarity=-0.060 Sum_probs=23.2
Q ss_pred CcCCCCCCccccCCCCCCCCCCCCCCCCCcccCCCCcHH
Q 030234 95 WIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAA 133 (181)
Q Consensus 95 ~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~~r~dd~~~ 133 (181)
..|+.||..+ |.....|++||..|..|...+.+
T Consensus 222 ~~C~~Cd~l~------~~~~a~CpRC~~~L~~~~~~s~~ 254 (419)
T PRK15103 222 RSCSCCTAIL------PADQPVCPRCHTKGYVRRRNSLQ 254 (419)
T ss_pred CcCCCCCCCC------CCCCCCCCCCCCcCcCCCCCCHH
Confidence 3477777653 33445799999999888776644
No 212
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=20.69 E-value=1.4e+02 Score=19.52 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=16.7
Q ss_pred CEEEEeCC-CChHHHHHHHHHHhc
Q 030234 158 IVAQLHAE-KPPQEVTSEVQKALS 180 (181)
Q Consensus 158 ~l~~Ida~-~~~~~v~~~i~~~l~ 180 (181)
....|||+ .+++||++.|...|+
T Consensus 57 ~~pVInA~G~T~eEI~~~v~~rl~ 80 (80)
T PF03698_consen 57 KVPVINASGLTAEEIVQEVEERLQ 80 (80)
T ss_pred CceEEecCCCCHHHHHHHHHHhhC
Confidence 45667765 478999999987663
No 213
>PHA02436 hypothetical protein
Probab=20.62 E-value=94 Score=17.97 Aligned_cols=22 Identities=23% Similarity=0.321 Sum_probs=17.1
Q ss_pred CEEEEeCCCChHHHHHHHHHHh
Q 030234 158 IVAQLHAEKPPQEVTSEVQKAL 179 (181)
Q Consensus 158 ~l~~Ida~~~~~~v~~~i~~~l 179 (181)
.+..+=|++.+++||+++.+.+
T Consensus 10 iiKE~yGeRkIEEVFeE~YE~~ 31 (52)
T PHA02436 10 IIKETYGERNIEEVFKEAYESF 31 (52)
T ss_pred EeehhhchhhHHHHHHHHHHHh
Confidence 4556679999999999987643
No 214
>PF11691 DUF3288: Protein of unknown function (DUF3288); InterPro: IPR021705 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=20.54 E-value=1.3e+02 Score=20.12 Aligned_cols=33 Identities=30% Similarity=0.492 Sum_probs=24.5
Q ss_pred ecCCCCCHHHHHHHHHHHHhcCCCccEEEEeecChHHHHHHHh
Q 030234 50 LDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERIT 92 (181)
Q Consensus 50 LdGfPrt~~Qa~~l~~~l~~~~~~p~~vi~L~~~~~~~~~Rl~ 92 (181)
-+|||--..=-.-|+++|+.|++ +++.++++..
T Consensus 38 Y~gFPGA~diq~DL~kiL~~W~l----------teeeLf~kTR 70 (90)
T PF11691_consen 38 YQGFPGARDIQKDLDKILQKWGL----------TEEELFEKTR 70 (90)
T ss_pred hcCCCCHHHHHHHHHHHHHHcCC----------CHHHHHHHHH
Confidence 47999988877778888888875 3666776653
No 215
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=20.22 E-value=1.4e+02 Score=22.38 Aligned_cols=48 Identities=17% Similarity=0.055 Sum_probs=29.0
Q ss_pred CCCeEecCCCCCHHH-HHHHHHHHHhcCCCccEEEEeecChHHHHHHHhCCC
Q 030234 45 QKGFILDGFPRTEVQ-AQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 95 (181)
Q Consensus 45 ~~G~iLdGfPrt~~Q-a~~l~~~l~~~~~~p~~vi~L~~~~~~~~~Rl~~r~ 95 (181)
...+|+|+..-+..- .+.+.+.|. ..|-++|-+.||.+++.+|-..|.
T Consensus 83 G~~VIvD~v~~~~~~l~d~l~~~L~---~~~vl~VgV~Cpleil~~RE~~Rg 131 (174)
T PF07931_consen 83 GNNVIVDDVFLGPRWLQDCLRRLLA---GLPVLFVGVRCPLEILERRERARG 131 (174)
T ss_dssp T-EEEEEE--TTTHHHHHHHHHHHT---TS-EEEEEEE--HHHHHHHHHHHT
T ss_pred CCCEEEecCccCcHHHHHHHHHHhC---CCceEEEEEECCHHHHHHHHHhcC
Confidence 356788877666543 344434442 356689999999999999988775
No 216
>TIGR00687 pyridox_kin pyridoxal kinase. ThiD and related proteins form an outgroup.
Probab=20.19 E-value=3.6e+02 Score=21.39 Aligned_cols=60 Identities=12% Similarity=0.202 Sum_probs=38.2
Q ss_pred CCCCCCHHHHHHHHHHHHcCCC--CCCCeEecCCCCCHHHHHHHHHHHHhcCC-CccEEEEeec
Q 030234 22 KGELVSDDLVVGIIDEAMKKPS--CQKGFILDGFPRTEVQAQKLDEMLEKQGK-KVDKVLNFAI 82 (181)
Q Consensus 22 ~G~~vpd~~v~~ll~~~l~~~~--~~~G~iLdGfPrt~~Qa~~l~~~l~~~~~-~p~~vi~L~~ 82 (181)
.|..++.+.+.+++.. +.... ..-.+|+-||--+..|++.+.+++..... .|+..+++|.
T Consensus 50 ~g~~~~~~~~~~~~~~-~~~~~~~~~~d~v~~G~l~~~~~~~~~~~~l~~~~~~~~~~~vv~Dp 112 (286)
T TIGR00687 50 TGQVLPPDELTELVDG-LAAINKLNQCDAVLSGYLGSAEQVAMVVGIVRQVKQANPQALYVCDP 112 (286)
T ss_pred cCeECCHHHHHHHHHH-HHhcCccccCCEEEECCCCCHHHHHHHHHHHHHHHHhCCCCcEEECC
Confidence 4666787888887654 32211 13346899999999999988877764321 2444555554
Done!