Query 030234
Match_columns 181
No_of_seqs 169 out of 1035
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 17:07:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030234.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030234hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gmt_A Adenylate kinase; ssgci 100.0 1.4E-50 4.8E-55 316.5 16.3 177 1-181 42-229 (230)
2 3sr0_A Adenylate kinase; phosp 100.0 3.8E-48 1.3E-52 299.3 19.5 170 1-180 34-203 (206)
3 3tlx_A Adenylate kinase 2; str 100.0 1.7E-40 5.9E-45 262.0 19.5 180 1-180 63-242 (243)
4 3umf_A Adenylate kinase; rossm 100.0 6E-39 2E-43 249.4 16.0 149 1-180 63-212 (217)
5 3dl0_A Adenylate kinase; phosp 100.0 1.1E-37 3.8E-42 240.7 20.3 180 1-180 34-213 (216)
6 3fb4_A Adenylate kinase; psych 100.0 8.4E-37 2.9E-41 235.6 20.0 179 2-180 35-213 (216)
7 3be4_A Adenylate kinase; malar 100.0 3E-36 1E-40 233.5 19.2 179 1-179 39-217 (217)
8 1ak2_A Adenylate kinase isoenz 100.0 1E-34 3.5E-39 227.1 21.9 180 1-180 50-229 (233)
9 2xb4_A Adenylate kinase; ATP-b 100.0 1.5E-34 5.1E-39 225.0 16.3 178 2-180 35-223 (223)
10 1e4v_A Adenylate kinase; trans 100.0 6.6E-34 2.3E-38 219.6 16.3 175 2-180 35-214 (214)
11 1aky_A Adenylate kinase; ATP:A 100.0 8.2E-33 2.8E-37 214.2 21.0 178 2-180 39-218 (220)
12 1zd8_A GTP:AMP phosphotransfer 100.0 1.3E-29 4.4E-34 197.2 18.5 172 2-180 42-213 (227)
13 1zak_A Adenylate kinase; ATP:A 99.9 3.4E-27 1.2E-31 182.8 15.0 169 2-180 40-209 (222)
14 2cdn_A Adenylate kinase; phosp 99.9 7.1E-21 2.4E-25 144.9 17.0 146 2-180 55-200 (201)
15 2bbw_A Adenylate kinase 4, AK4 99.9 1.3E-20 4.4E-25 148.0 18.9 171 3-180 63-233 (246)
16 3cm0_A Adenylate kinase; ATP-b 99.8 2.1E-19 7.2E-24 134.7 17.3 147 2-180 39-185 (186)
17 2c95_A Adenylate kinase 1; tra 99.8 9.3E-19 3.2E-23 131.9 16.0 148 2-180 44-192 (196)
18 1qf9_A UMP/CMP kinase, protein 99.8 2.8E-18 9.6E-23 128.7 17.7 150 2-180 41-190 (194)
19 1tev_A UMP-CMP kinase; ploop, 99.8 2.7E-18 9.1E-23 129.0 15.7 145 8-180 45-193 (196)
20 1ukz_A Uridylate kinase; trans 99.8 1.6E-18 5.5E-23 131.8 13.9 148 2-180 50-200 (203)
21 2bwj_A Adenylate kinase 5; pho 99.8 3.2E-18 1.1E-22 129.2 14.8 148 2-180 47-195 (199)
22 4eaq_A DTMP kinase, thymidylat 99.3 2.1E-11 7.3E-16 94.7 11.2 141 7-180 62-223 (229)
23 3lw7_A Adenylate kinase relate 99.0 1.4E-08 4.7E-13 73.9 14.8 115 27-180 61-175 (179)
24 2pbr_A DTMP kinase, thymidylat 99.0 1.5E-08 5.3E-13 75.3 15.2 128 9-180 39-190 (195)
25 4hlc_A DTMP kinase, thymidylat 98.9 3.4E-08 1.1E-12 75.4 13.4 138 8-180 39-199 (205)
26 2z0h_A DTMP kinase, thymidylat 98.8 2.1E-07 7.1E-12 69.3 14.9 134 8-180 38-190 (197)
27 3v9p_A DTMP kinase, thymidylat 98.8 3.5E-08 1.2E-12 76.5 9.5 138 8-180 67-225 (227)
28 3lv8_A DTMP kinase, thymidylat 98.7 9.4E-07 3.2E-11 68.8 15.0 134 8-180 66-227 (236)
29 2wwf_A Thymidilate kinase, put 98.7 7.2E-08 2.5E-12 72.8 8.2 132 9-180 50-198 (212)
30 1ly1_A Polynucleotide kinase; 98.7 3E-07 1E-11 67.4 11.2 108 30-179 63-170 (181)
31 4edh_A DTMP kinase, thymidylat 98.7 5.8E-07 2E-11 68.9 13.1 138 8-180 44-205 (213)
32 2plr_A DTMP kinase, probable t 98.6 1.1E-07 3.7E-12 71.5 8.3 109 46-180 87-206 (213)
33 4tmk_A Protein (thymidylate ki 98.6 9.9E-06 3.4E-10 62.0 17.4 137 8-180 42-205 (213)
34 1nks_A Adenylate kinase; therm 98.5 9.8E-07 3.3E-11 65.2 10.6 95 45-180 85-194 (194)
35 2v54_A DTMP kinase, thymidylat 98.5 2.2E-06 7.5E-11 64.1 12.2 130 9-180 42-189 (204)
36 1kht_A Adenylate kinase; phosp 98.3 4.4E-06 1.5E-10 61.6 10.0 101 45-180 84-192 (192)
37 1p5z_B DCK, deoxycytidine kina 98.3 6.3E-07 2.1E-11 70.3 5.6 104 51-180 146-257 (263)
38 3ld9_A DTMP kinase, thymidylat 98.3 7.2E-06 2.5E-10 63.3 10.1 132 8-180 61-214 (223)
39 2vp4_A Deoxynucleoside kinase; 98.2 1.1E-06 3.7E-11 67.7 5.1 78 70-180 143-223 (230)
40 1nn5_A Similar to deoxythymidy 98.2 8.6E-06 2.9E-10 61.2 9.8 130 9-180 49-199 (215)
41 3hjn_A DTMP kinase, thymidylat 98.2 9E-05 3.1E-09 55.8 15.2 133 8-180 38-190 (197)
42 2jaq_A Deoxyguanosine kinase; 98.2 1.5E-05 5.2E-10 59.2 10.8 77 72-180 123-199 (205)
43 3t61_A Gluconokinase; PSI-biol 98.1 5.6E-05 1.9E-09 56.5 12.0 114 21-180 62-178 (202)
44 3tmk_A Thymidylate kinase; pho 98.0 2.3E-05 7.7E-10 60.2 8.5 137 8-180 41-201 (216)
45 1ltq_A Polynucleotide kinase; 98.0 4.1E-05 1.4E-09 60.7 10.2 109 29-170 62-172 (301)
46 3kb2_A SPBC2 prophage-derived 98.0 4.9E-05 1.7E-09 54.9 9.2 72 72-180 93-165 (173)
47 3vaa_A Shikimate kinase, SK; s 97.9 7E-05 2.4E-09 56.0 10.0 96 45-180 94-194 (199)
48 3a4m_A L-seryl-tRNA(SEC) kinas 97.9 0.00014 4.6E-09 56.9 11.2 98 46-180 73-172 (260)
49 1cke_A CK, MSSA, protein (cyti 97.8 3.3E-06 1.1E-10 64.2 0.7 98 44-180 122-221 (227)
50 2vli_A Antibiotic resistance p 97.7 0.0016 5.4E-08 47.4 13.1 106 30-180 64-170 (183)
51 2qt1_A Nicotinamide riboside k 97.6 0.00014 4.7E-09 54.5 7.0 93 46-180 111-204 (207)
52 1knq_A Gluconate kinase; ALFA/ 97.6 0.00053 1.8E-08 49.8 9.9 90 46-180 81-172 (175)
53 1e6c_A Shikimate kinase; phosp 97.5 0.00065 2.2E-08 49.0 9.5 93 46-180 71-169 (173)
54 2qor_A Guanylate kinase; phosp 97.5 0.00099 3.4E-08 49.8 10.5 89 45-180 103-195 (204)
55 2ocp_A DGK, deoxyguanosine kin 97.5 0.00012 3.9E-09 56.5 5.1 79 72-180 148-232 (241)
56 2rhm_A Putative kinase; P-loop 97.5 0.0001 3.5E-09 54.3 4.2 50 45-95 77-126 (193)
57 4eun_A Thermoresistant glucoki 97.3 0.00075 2.6E-08 50.3 7.8 91 46-180 102-192 (200)
58 1q3t_A Cytidylate kinase; nucl 97.3 0.00015 5.2E-09 55.7 3.3 95 45-180 135-233 (236)
59 2pt5_A Shikimate kinase, SK; a 97.2 0.0017 5.7E-08 46.6 7.9 91 45-180 69-162 (168)
60 1gtv_A TMK, thymidylate kinase 97.0 8.5E-05 2.9E-09 55.7 -0.9 101 46-177 89-209 (214)
61 2yvu_A Probable adenylyl-sulfa 96.9 0.0013 4.4E-08 48.3 5.4 44 48-92 88-131 (186)
62 3nwj_A ATSK2; P loop, shikimat 96.7 0.011 3.8E-07 46.0 9.5 99 47-180 121-235 (250)
63 1vht_A Dephospho-COA kinase; s 96.7 0.0021 7.1E-08 48.4 5.0 87 46-180 107-193 (218)
64 3trf_A Shikimate kinase, SK; a 96.7 0.015 5.1E-07 42.2 9.4 72 75-180 99-173 (185)
65 1m7g_A Adenylylsulfate kinase; 96.6 0.0013 4.4E-08 49.4 3.3 95 46-180 99-201 (211)
66 1y63_A LMAJ004144AAA protein; 96.5 0.014 4.8E-07 42.7 8.6 55 27-95 68-122 (184)
67 3ake_A Cytidylate kinase; CMP 96.5 0.0078 2.7E-07 44.4 7.2 84 46-180 119-207 (208)
68 1uj2_A Uridine-cytidine kinase 96.5 0.002 6.8E-08 49.8 3.7 95 45-180 131-232 (252)
69 1zuh_A Shikimate kinase; alpha 96.4 0.0067 2.3E-07 43.5 6.2 71 73-179 96-167 (168)
70 2iyv_A Shikimate kinase, SK; t 96.4 0.0086 2.9E-07 43.5 6.8 73 74-180 94-167 (184)
71 3iij_A Coilin-interacting nucl 96.4 0.019 6.4E-07 41.6 8.5 22 74-95 97-118 (180)
72 2if2_A Dephospho-COA kinase; a 96.3 0.0073 2.5E-07 44.7 5.9 68 73-180 123-190 (204)
73 1jjv_A Dephospho-COA kinase; P 96.3 0.019 6.3E-07 42.6 7.9 86 46-180 106-195 (206)
74 2p5t_B PEZT; postsegregational 96.2 0.013 4.6E-07 45.2 6.9 49 46-95 110-158 (253)
75 3tr0_A Guanylate kinase, GMP k 95.8 0.012 4.3E-07 43.3 5.2 88 46-180 98-185 (205)
76 1kag_A SKI, shikimate kinase I 95.8 0.012 4.2E-07 42.2 4.8 93 46-180 74-171 (173)
77 3czq_A Putative polyphosphate 95.7 0.063 2.1E-06 43.0 8.9 95 59-180 177-277 (304)
78 2f6r_A COA synthase, bifunctio 95.6 0.022 7.4E-07 44.9 6.0 86 46-180 182-267 (281)
79 2j41_A Guanylate kinase; GMP, 95.5 0.027 9.1E-07 41.4 6.0 86 46-180 98-185 (207)
80 1via_A Shikimate kinase; struc 95.4 0.025 8.7E-07 40.7 5.5 71 74-180 93-165 (175)
81 1uf9_A TT1252 protein; P-loop, 95.3 0.042 1.4E-06 40.2 6.4 69 73-180 124-192 (203)
82 3zvl_A Bifunctional polynucleo 94.7 0.12 4.3E-06 42.8 8.4 61 32-96 299-359 (416)
83 2h92_A Cytidylate kinase; ross 94.3 0.05 1.7E-06 40.5 4.6 78 73-180 135-216 (219)
84 2pez_A Bifunctional 3'-phospho 93.9 0.17 5.7E-06 36.4 6.6 46 48-94 79-125 (179)
85 4e22_A Cytidylate kinase; P-lo 93.7 0.43 1.5E-05 36.6 9.0 51 32-93 132-182 (252)
86 1ex7_A Guanylate kinase; subst 93.1 0.37 1.3E-05 35.6 7.4 92 46-181 93-184 (186)
87 1gvn_B Zeta; postsegregational 92.9 0.35 1.2E-05 38.0 7.4 50 45-95 110-163 (287)
88 4i1u_A Dephospho-COA kinase; s 92.8 0.39 1.3E-05 36.2 7.2 69 73-180 131-200 (210)
89 3tau_A Guanylate kinase, GMP k 92.2 0.11 3.6E-06 38.8 3.4 51 123-180 137-187 (208)
90 3czp_A Putative polyphosphate 92.2 0.72 2.5E-05 39.4 8.9 98 57-179 132-233 (500)
91 2axn_A 6-phosphofructo-2-kinas 90.9 0.49 1.7E-05 40.5 6.6 82 45-150 119-202 (520)
92 1qhx_A CPT, protein (chloramph 90.5 1.4 4.9E-05 31.1 8.0 47 46-95 87-134 (178)
93 3czp_A Putative polyphosphate 89.8 0.79 2.7E-05 39.1 6.8 96 59-179 391-490 (500)
94 3a00_A Guanylate kinase, GMP k 88.6 0.57 1.9E-05 33.9 4.5 54 123-181 131-184 (186)
95 3fdi_A Uncharacterized protein 85.3 3.8 0.00013 30.1 7.6 73 75-180 118-197 (201)
96 1kjw_A Postsynaptic density pr 85.1 10 0.00036 29.7 10.5 111 14-180 158-280 (295)
97 1p6x_A Thymidine kinase; P-loo 84.7 1.8 6.1E-05 35.0 5.8 47 48-94 117-178 (334)
98 2gks_A Bifunctional SAT/APS ki 84.5 1.3 4.6E-05 38.0 5.4 44 45-92 444-488 (546)
99 3hdt_A Putative kinase; struct 83.3 6.1 0.00021 29.7 8.1 73 75-180 138-217 (223)
100 3rhf_A Putative polyphosphate 80.8 5 0.00017 31.7 6.9 97 57-180 164-266 (289)
101 1x6v_B Bifunctional 3'-phospho 78.3 7.7 0.00026 34.0 7.9 21 73-93 151-171 (630)
102 3lnc_A Guanylate kinase, GMP k 77.6 3.5 0.00012 30.6 5.0 44 130-180 164-207 (231)
103 1s96_A Guanylate kinase, GMP k 73.8 25 0.00084 26.1 9.9 45 129-180 152-196 (219)
104 2xkx_A Disks large homolog 4; 71.6 35 0.0012 30.2 10.5 86 46-180 621-706 (721)
105 6rxn_A Rubredoxin; electron tr 70.9 2.1 7E-05 24.2 1.6 31 93-123 3-39 (46)
106 1osn_A Thymidine kinase, VZV-T 70.0 8.8 0.0003 31.0 5.8 24 71-94 164-187 (341)
107 3uie_A Adenylyl-sulfate kinase 64.0 19 0.00066 25.8 6.3 17 75-91 124-140 (200)
108 1e2k_A Thymidine kinase; trans 63.5 20 0.00068 28.7 6.7 50 46-95 112-176 (331)
109 3pwf_A Rubrerythrin; non heme 62.0 3.6 0.00012 29.8 1.8 25 94-123 138-162 (170)
110 1of1_A Thymidine kinase; trans 60.2 24 0.00082 28.8 6.7 24 72-95 198-221 (376)
111 3kfv_A Tight junction protein 55.8 15 0.0005 29.2 4.6 17 162-180 272-288 (308)
112 1e8j_A Rubredoxin; iron-sulfur 53.7 13 0.00045 21.3 3.0 30 93-122 2-44 (52)
113 2kn9_A Rubredoxin; metalloprot 52.7 7.7 0.00026 24.6 2.0 30 93-122 26-68 (81)
114 2jeo_A Uridine-cytidine kinase 51.5 13 0.00045 27.7 3.6 41 46-95 135-175 (245)
115 1yuz_A Nigerythrin; rubrythrin 50.3 6.8 0.00023 29.1 1.7 25 94-123 171-195 (202)
116 1m8p_A Sulfate adenylyltransfe 49.1 9.7 0.00033 32.9 2.7 18 74-91 496-513 (573)
117 1s24_A Rubredoxin 2; electron 47.2 6.2 0.00021 25.4 0.9 31 92-122 33-76 (87)
118 2bdt_A BH3686; alpha-beta prot 47.1 55 0.0019 22.8 6.3 50 46-96 74-124 (189)
119 1dx8_A Rubredoxin; electron tr 47.1 9.3 0.00032 23.4 1.7 30 93-122 6-48 (70)
120 4rxn_A Rubredoxin; electron tr 43.9 11 0.00039 21.8 1.6 31 93-123 2-45 (54)
121 1rz3_A Hypothetical protein rb 43.9 9 0.00031 27.7 1.5 22 73-94 143-164 (201)
122 1lko_A Rubrerythrin all-iron(I 41.6 7 0.00024 28.7 0.6 26 94-123 155-180 (191)
123 3mb2_B 4-oxalocrotonate tautom 41.6 49 0.0017 20.2 4.3 38 52-89 10-54 (72)
124 2gmg_A Hypothetical protein PF 40.1 31 0.001 22.9 3.5 31 95-128 68-98 (105)
125 3r20_A Cytidylate kinase; stru 39.5 70 0.0024 24.0 6.0 76 75-180 147-226 (233)
126 1yk4_A Rubredoxin, RD; electro 36.5 12 0.00043 21.4 1.0 29 94-122 2-43 (52)
127 2oxl_A Hypothetical protein YM 35.2 72 0.0025 19.0 4.9 33 11-43 9-41 (64)
128 1bif_A 6-phosphofructo-2-kinas 33.7 51 0.0017 27.3 4.7 46 46-94 124-172 (469)
129 2lcq_A Putative toxin VAPC6; P 32.8 16 0.00054 25.9 1.2 28 94-125 132-159 (165)
130 3asz_A Uridine kinase; cytidin 31.2 1E+02 0.0035 21.8 5.6 22 73-94 124-145 (211)
131 2v3b_B Rubredoxin 2, rubredoxi 31.2 18 0.00062 20.9 1.1 29 94-122 3-44 (55)
132 1svm_A Large T antigen; AAA+ f 28.6 1.3 4.5E-05 36.3 -5.8 59 72-150 299-357 (377)
133 2ga8_A Hypothetical 39.9 kDa p 27.7 23 0.0008 28.7 1.6 20 76-95 291-310 (359)
134 2e72_A POGO transposable eleme 27.5 31 0.0011 19.5 1.6 14 93-106 11-24 (49)
135 4dey_A Voltage-dependent L-typ 25.8 1.4E+02 0.0049 23.9 5.8 20 159-180 300-319 (337)
136 1a7j_A Phosphoribulokinase; tr 25.1 42 0.0014 25.9 2.6 23 73-95 147-169 (290)
137 3tsz_A Tight junction protein 24.9 79 0.0027 25.7 4.3 46 130-180 334-379 (391)
138 3t0y_B NEPR; sigma factor, ant 24.0 45 0.0015 20.2 2.0 29 4-32 26-56 (68)
139 2ze6_A Isopentenyl transferase 22.4 1.4E+02 0.0047 22.2 5.0 20 76-95 119-139 (253)
140 1sq5_A Pantothenate kinase; P- 21.8 42 0.0014 26.0 2.0 23 73-95 214-236 (308)
141 1o7d_A Lysosomal alpha-mannosi 21.8 2.8E+02 0.0097 21.5 10.9 147 10-162 84-267 (298)
142 3cr8_A Sulfate adenylyltranfer 21.2 1.3E+02 0.0045 25.7 5.1 26 65-92 462-487 (552)
143 3shw_A Tight junction protein 20.7 95 0.0033 26.0 4.1 44 131-180 327-371 (468)
144 1e91_A Paired amphipathic heli 20.6 1.6E+02 0.0056 18.3 4.3 43 133-180 15-67 (85)
145 2i8d_A Uncharacterized conserv 20.4 99 0.0034 20.5 3.5 28 21-48 93-121 (123)
No 1
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=100.00 E-value=1.4e-50 Score=316.47 Aligned_cols=177 Identities=45% Similarity=0.807 Sum_probs=153.3
Q ss_pred ChhHHHhcCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCccEEEEe
Q 030234 1 MLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNF 80 (181)
Q Consensus 1 llr~~i~~~t~lg~~i~~~l~~G~~vpd~~v~~ll~~~l~~~~~~~G~iLdGfPrt~~Qa~~l~~~l~~~~~~p~~vi~L 80 (181)
+||++++.+|++|+.+++++.+|++|||++++++|+++|.+.+|.+||||||||||..||+.|+ +.+..|+.||+|
T Consensus 42 llR~~~~~~t~lG~~i~~~~~~G~lvpdei~~~ll~~~l~~~~~~~g~ILDGfPRt~~Qa~~L~----~~~~~~d~VI~L 117 (230)
T 3gmt_A 42 MLRAAVKAGTPLGVEAKTYMDEGKLVPDSLIIGLVKERLKEADCANGYLFDGFPRTIAQADAMK----EAGVAIDYVLEI 117 (230)
T ss_dssp HHHHHHHTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHSGGGTTCEEEESCCCSHHHHHHHH----HTTCCCSEEEEE
T ss_pred HHHHhccCCChHHHHHHHHHhhccccccHHHHHHHHHHHhCcccCCCeEecCCCCcHHHHHHHH----HhCCCccEEEEE
Confidence 5799999999999999999999999999999999999999888889999999999999999875 356789999999
Q ss_pred ecChHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhc----
Q 030234 81 AIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKK---- 156 (181)
Q Consensus 81 ~~~~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~~r~dd~~~~i~~Rl~~y~~~~~~l~~~y~~~---- 156 (181)
+||++++++|+++|++||.||++||..|+||+.+++||.||++|++|+||+++.|++||+.|++++.||++||.+.
T Consensus 118 dvp~e~l~~Rl~~R~~~~~~G~~Yh~~~~pp~~~~~~d~~g~~L~~R~DD~~e~i~~Rl~~y~~~t~pl~~~Y~~~~~~~ 197 (230)
T 3gmt_A 118 DVPFSEIIERMSGRRTHPASGRTYHVKFNPPKVEGKDDVTGEPLVQRDDDKEETVKKRLDVYEAQTKPLITYYGDWARRG 197 (230)
T ss_dssp CCCHHHHHHHHHTEEEETTTTEEEETTTBCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred eCCHHHHHHHHHcCCcccccCCcccccCCCCCccCcCCCccCccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999973
Q ss_pred -------CCEEEEeCCCChHHHHHHHHHHhcC
Q 030234 157 -------GIVAQLHAEKPPQEVTSEVQKALSA 181 (181)
Q Consensus 157 -------~~l~~Ida~~~~~~v~~~i~~~l~~ 181 (181)
++++.|||++++++||++|.++|.+
T Consensus 198 ~~~~~~~~~l~~idg~~~~~eV~~~i~~~l~~ 229 (230)
T 3gmt_A 198 AENGLKAPAYRKISGLGAVEEIRARVRRAQVS 229 (230)
T ss_dssp CBTTBCCCEEEEECC-----------------
T ss_pred ccccccCCeEEEEECCCCHHHHHHHHHHHHhc
Confidence 7899999999999999999998753
No 2
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=100.00 E-value=3.8e-48 Score=299.26 Aligned_cols=170 Identities=51% Similarity=0.854 Sum_probs=163.3
Q ss_pred ChhHHHhcCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCccEEEEe
Q 030234 1 MLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNF 80 (181)
Q Consensus 1 llr~~i~~~t~lg~~i~~~l~~G~~vpd~~v~~ll~~~l~~~~~~~G~iLdGfPrt~~Qa~~l~~~l~~~~~~p~~vi~L 80 (181)
|||++++++|++|+.++.+|++|++|||++++++|.+++.+. .||||||||||..||+.|+..+...+..|+.||+|
T Consensus 34 llR~~i~~~t~lg~~~~~~~~~G~lvpd~iv~~lv~~~l~~~---~~~ilDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l 110 (206)
T 3sr0_A 34 ILREAVQKGTPLGKKAKEYMERGELVPDDLIIALIEEVFPKH---GNVIFDGFPRTVKQAEALDEMLEKKGLKVDHVLLF 110 (206)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHCCSS---SCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEE
T ss_pred HHHHHHHhcChhhhhHHHHHhcCCcCCHHHHHHHHHHhhccC---CceEecCCchhHHHHHHHHhhHHHhccccceeeec
Confidence 589999999999999999999999999999999999999654 58999999999999999999999999999999999
Q ss_pred ecChHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCCEE
Q 030234 81 AIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVA 160 (181)
Q Consensus 81 ~~~~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~~r~dd~~~~i~~Rl~~y~~~~~~l~~~y~~~~~l~ 160 (181)
+||++++++|+++|++|+.||+.||..++||+ ||+++++|.||+++.+++||+.|++++.||++||+++++++
T Consensus 111 ~v~~e~l~~Rl~~R~~~~~~g~~y~~~~~pp~-------~g~~l~~r~DD~~e~i~~Rl~~Y~~~t~pl~~~Y~~~~~l~ 183 (206)
T 3sr0_A 111 EVPDEVVIERLSGRRINPETGEVYHVKYNPPP-------PGVKVIQREDDKPEVIKKRLEVYREQTAPLIEYYKKKGILR 183 (206)
T ss_dssp ECCHHHHHHHHHTEEECTTTCCEEETTTBCCC-------TTCCCBCCGGGSHHHHHHHHHHHHHHTTHHHHHHHTTTCEE
T ss_pred CCCHHHHHHHHhCCccccCCCceeeeeccCCC-------CCceecccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEE
Confidence 99999999999999999999999999999995 57889999999999999999999999999999999999999
Q ss_pred EEeCCCChHHHHHHHHHHhc
Q 030234 161 QLHAEKPPQEVTSEVQKALS 180 (181)
Q Consensus 161 ~Ida~~~~~~v~~~i~~~l~ 180 (181)
.|||++++++||++|.++|.
T Consensus 184 ~Idg~~~~~eV~~~I~~~l~ 203 (206)
T 3sr0_A 184 IIDASKPVEEVYRQVLEVIG 203 (206)
T ss_dssp EEETTSCHHHHHHHHHHHHC
T ss_pred EEECCCCHHHHHHHHHHHHc
Confidence 99999999999999999985
No 3
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=100.00 E-value=1.7e-40 Score=261.96 Aligned_cols=180 Identities=47% Similarity=0.853 Sum_probs=173.4
Q ss_pred ChhHHHhcCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCccEEEEe
Q 030234 1 MLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNF 80 (181)
Q Consensus 1 llr~~i~~~t~lg~~i~~~l~~G~~vpd~~v~~ll~~~l~~~~~~~G~iLdGfPrt~~Qa~~l~~~l~~~~~~p~~vi~L 80 (181)
++|+++..++++|+.+++++.+|.++||+++..++..++...++.+||||||||++..|++.|++++...+..|+.||+|
T Consensus 63 ~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~ildg~p~~~~q~~~l~~~l~~~~~~~d~vi~l 142 (243)
T 3tlx_A 63 LLREAAEKKTELGLKIKNIINEGKLVDDQMVLSLVDEKLKTPQCKKGFILDGYPRNVKQAEDLNKLLQKNQTKLDGVFYF 142 (243)
T ss_dssp HHHHHTTSSSHHHHHHHHHHHTTCCCCHHHHHHHHHHHTTSGGGSSEEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEE
T ss_pred HHHHHHhccchHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcccccCCEEecCCCCcHHHHHHHHHHHHHcCCCCceEEEE
Confidence 36888899999999999999999999999999999999988777899999999999999999998888888999999999
Q ss_pred ecChHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCCEE
Q 030234 81 AIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVA 160 (181)
Q Consensus 81 ~~~~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~~r~dd~~~~i~~Rl~~y~~~~~~l~~~y~~~~~l~ 160 (181)
++|++++++|+.+|+.|+.||+.||..|+||+.++.|+.||++|++|.||+++.+++|+..|++.+.|+.+||.+.+.++
T Consensus 143 ~~p~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~r~dd~~e~i~~Rl~~~~~~~~~l~~~y~~~~~~~ 222 (243)
T 3tlx_A 143 NVPDEVLVNRISGRLIHKPSGRIYHKIFNPPKVPFRDDVTNEPLIQREDDNEDVLKKRLTVFKSETSPLISYYKNKNLLI 222 (243)
T ss_dssp ECCHHHHHHHHHTEEEETTTTEEEETTTBCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHHHTTHHHHHHHHTTCEE
T ss_pred eCCHHHHHHHHHcCCCCcccCcccccccCCCcccCccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCChHHHHHHHHHHhc
Q 030234 161 QLHAEKPPQEVTSEVQKALS 180 (181)
Q Consensus 161 ~Ida~~~~~~v~~~i~~~l~ 180 (181)
.|||++++++|+++|.++|+
T Consensus 223 ~id~~~~~~~v~~~i~~~l~ 242 (243)
T 3tlx_A 223 NLDATQPANDLEKKISQHID 242 (243)
T ss_dssp EEETTSCHHHHHHHHHHHHH
T ss_pred EEECCCCHHHHHHHHHHHHc
Confidence 99999999999999999885
No 4
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=100.00 E-value=6e-39 Score=249.36 Aligned_cols=149 Identities=30% Similarity=0.473 Sum_probs=135.0
Q ss_pred ChhHHHhcCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCC-CCCCeEecCCCCCHHHHHHHHHHHHhcCCCccEEEE
Q 030234 1 MLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPS-CQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLN 79 (181)
Q Consensus 1 llr~~i~~~t~lg~~i~~~l~~G~~vpd~~v~~ll~~~l~~~~-~~~G~iLdGfPrt~~Qa~~l~~~l~~~~~~p~~vi~ 79 (181)
|||++++.+|++|+.+++++++|++|||++++++|.++|.+.. +.+||||||||||..||+.|++. ...|+.||+
T Consensus 63 llR~~i~~~t~lg~~~~~~~~~G~lVpde~~~~lv~~~l~~~~~~~~g~ilDGfPRt~~Qa~~l~~~----~~~~~~vi~ 138 (217)
T 3umf_A 63 LLRAEVQSGSPKGKELKAMMERGELVPLEVVLALLKEAMIKLVDKNCHFLIDGYPRELDQGIKFEKE----VCPCLCVIN 138 (217)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHTTTCSEEEEETBCSSHHHHHHHHHH----TCCCSEEEE
T ss_pred HHHHHHHcCCchHHHHHHHHhcCCCCCHHHHHHHHHHHHhhccccccCcccccCCCcHHHHHHHHHh----CCccCEEEe
Confidence 5899999999999999999999999999999999999997644 46899999999999999998754 468999999
Q ss_pred eecChHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCCE
Q 030234 80 FAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIV 159 (181)
Q Consensus 80 L~~~~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~~r~dd~~~~i~~Rl~~y~~~~~~l~~~y~~~~~l 159 (181)
|+||++++.+|+++|+. +.+|.||+++.+++||+.|++++.||++||++++++
T Consensus 139 l~v~~e~~~~Rl~~R~~---------------------------~~~R~DD~~e~i~~Rl~~Y~~~t~pl~~~Y~~~~~l 191 (217)
T 3umf_A 139 FDVSEEVMRKRLLKRAE---------------------------TSNRVDDNEETIVKRFRTFNELTKPVIEHYKQQNKV 191 (217)
T ss_dssp EECCHHHHHHHHSCC---------------------------------CHHHHHHHHHHHHHHHHHTHHHHHHHHTTTCE
T ss_pred ccCCHHHHHHHHhcccc---------------------------cCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCE
Confidence 99999999999999963 245999999999999999999999999999999999
Q ss_pred EEEeCCCChHHHHHHHHHHhc
Q 030234 160 AQLHAEKPPQEVTSEVQKALS 180 (181)
Q Consensus 160 ~~Ida~~~~~~v~~~i~~~l~ 180 (181)
+.|||++++++||++|.++|+
T Consensus 192 ~~Idg~~~~eeV~~~I~~~l~ 212 (217)
T 3umf_A 192 ITIDASGTVDAIFDKVNHELQ 212 (217)
T ss_dssp EEEETTSCHHHHHHHHHHHHH
T ss_pred EEEECCCCHHHHHHHHHHHHH
Confidence 999999999999999999886
No 5
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=100.00 E-value=1.1e-37 Score=240.66 Aligned_cols=180 Identities=46% Similarity=0.808 Sum_probs=172.3
Q ss_pred ChhHHHhcCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCccEEEEe
Q 030234 1 MLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNF 80 (181)
Q Consensus 1 llr~~i~~~t~lg~~i~~~l~~G~~vpd~~v~~ll~~~l~~~~~~~G~iLdGfPrt~~Qa~~l~~~l~~~~~~p~~vi~L 80 (181)
++|+.+..++++|..+++++.+|.++|++++..++..++...++..||||||||++..|++.|...+...+..|+.||+|
T Consensus 34 ~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~ildg~p~~~~~~~~~~~~~~~~~~~~d~vi~l 113 (216)
T 3dl0_A 34 MFRAAMKEETPLGLEAKSYIDKGELVPDEVTIGIVKERLGKDDCERGFLLDGFPRTVAQAEALEEILEEMGKPIDYVINI 113 (216)
T ss_dssp HHHHHHHTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHTSGGGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEE
T ss_pred HHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcccccCCEEEeCCCCCHHHHHHHHHHHHHcCCCCCEEEEE
Confidence 36788889999999999999999999999999999999988777789999999999999999998888888899999999
Q ss_pred ecChHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCCEE
Q 030234 81 AIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVA 160 (181)
Q Consensus 81 ~~~~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~~r~dd~~~~i~~Rl~~y~~~~~~l~~~y~~~~~l~ 160 (181)
++|++++.+|+.+|++||.||+.||..++||+.+++||.||++|.+|.+|+++.+++|+..|++.+.++.+||.+.+.++
T Consensus 114 ~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~r~~d~~e~i~~rl~~~~~~~~~~~~~~~~~~~~~ 193 (216)
T 3dl0_A 114 QVDKDVLMERLTGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVTKRLEVNMKQTAPLLDFYDEKGYLV 193 (216)
T ss_dssp ECCGGGHHHHHHTEEEETTTCCEEETTTBCCSSTTBCTTTCCBEECCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHTCEE
T ss_pred ECCHHHHHHHHHCCCcCCccCCccccccCCCcccCccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988999
Q ss_pred EEeCCCChHHHHHHHHHHhc
Q 030234 161 QLHAEKPPQEVTSEVQKALS 180 (181)
Q Consensus 161 ~Ida~~~~~~v~~~i~~~l~ 180 (181)
.|||++++++|+++|.++|+
T Consensus 194 ~id~~~~~~~v~~~i~~~l~ 213 (216)
T 3dl0_A 194 NVNGQQDIQDVYADLKVLLG 213 (216)
T ss_dssp EEECSSCHHHHHHHHHHHHG
T ss_pred EEECCCCHHHHHHHHHHHHH
Confidence 99999999999999999886
No 6
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=100.00 E-value=8.4e-37 Score=235.57 Aligned_cols=179 Identities=45% Similarity=0.801 Sum_probs=171.7
Q ss_pred hhHHHhcCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCccEEEEee
Q 030234 2 LRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFA 81 (181)
Q Consensus 2 lr~~i~~~t~lg~~i~~~l~~G~~vpd~~v~~ll~~~l~~~~~~~G~iLdGfPrt~~Qa~~l~~~l~~~~~~p~~vi~L~ 81 (181)
+|+.+..+++.|..+++++.+|.++|++++..++..++....+..||||||||++..|+..|...+...+..|+.||+|+
T Consensus 35 ~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~ildg~p~~~~~~~~l~~~~~~~~~~~d~vi~l~ 114 (216)
T 3fb4_A 35 FRAAIKNGTELGLKAKSFMDQGNLVPDEVTIGIVHERLSKDDCQKGFLLDGFPRTVAQADALDSLLTDLGKKLDYVLNIK 114 (216)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTSGGGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEE
T ss_pred HHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcccCCCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEE
Confidence 67888899999999999999999999999999999999887777899999999999999999988888888899999999
Q ss_pred cChHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCCEEE
Q 030234 82 IDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQ 161 (181)
Q Consensus 82 ~~~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~~r~dd~~~~i~~Rl~~y~~~~~~l~~~y~~~~~l~~ 161 (181)
+|.+++++|+.+|++||.||+.||..++||+.+++|+.||+++.+|.+|+++.+++|+..|++.+.++.+||.+.+.++.
T Consensus 115 ~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~r~~d~~e~i~~rl~~~~~~~~~~~~~~~~~~~~~~ 194 (216)
T 3fb4_A 115 VEQEELMKRLTGRWICKTCGATYHTIFNPPAVEGICDKDGGELYQRIDDKPETVKNRLDVNMKQTQPLLDFYSQKGVLKD 194 (216)
T ss_dssp CCHHHHHHHHHSEEEETTTCCEEETTTBCCSSTTBCTTTCCBEECCGGGSHHHHHHHHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred CCHHHHHHHHHcCCCCCccCCccccccCCCCcccccccccCccccCCCCCHHHHHHHHHHHHHhHHHHHHHHHcCCcEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999889999
Q ss_pred EeCCCChHHHHHHHHHHhc
Q 030234 162 LHAEKPPQEVTSEVQKALS 180 (181)
Q Consensus 162 Ida~~~~~~v~~~i~~~l~ 180 (181)
|||++++++|+++|.++|.
T Consensus 195 id~~~~~~~v~~~i~~~l~ 213 (216)
T 3fb4_A 195 IDGQQDIKKVFVDINDLLG 213 (216)
T ss_dssp EECSSCHHHHHHHHHHHHH
T ss_pred EECCCCHHHHHHHHHHHHH
Confidence 9999999999999999875
No 7
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=3e-36 Score=233.49 Aligned_cols=179 Identities=47% Similarity=0.885 Sum_probs=165.8
Q ss_pred ChhHHHhcCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCccEEEEe
Q 030234 1 MLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNF 80 (181)
Q Consensus 1 llr~~i~~~t~lg~~i~~~l~~G~~vpd~~v~~ll~~~l~~~~~~~G~iLdGfPrt~~Qa~~l~~~l~~~~~~p~~vi~L 80 (181)
++|+.+..+|++|+.+++++.+|..+|++++.+++..++....+..|||+||||+|..|++.|..++...+..|+.||+|
T Consensus 39 li~~~~~~~t~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~~~~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L 118 (217)
T 3be4_A 39 MLREAIKNGTKIGLEAKSIIESGNFVGDEIVLGLVKEKFDLGVCVNGFVLDGFPRTIPQAEGLAKILSEIGDSLTSVIYF 118 (217)
T ss_dssp HHHHHHHTC--CCHHHHHHHHHTCCCCHHHHHHHHHHHHHTTTTTTCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEE
T ss_pred HHHHHHHcCCHHHHHHHHHHHCCCcCCHHHHHHHHHHHHhccccCCCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEE
Confidence 36777888999999999999999999999999999999987666789999999999999999987776777889999999
Q ss_pred ecChHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCCEE
Q 030234 81 AIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVA 160 (181)
Q Consensus 81 ~~~~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~~r~dd~~~~i~~Rl~~y~~~~~~l~~~y~~~~~l~ 160 (181)
++|.+++.+|+.+|+.|+.||+.||..|+||+.++.|+.|+.+|.+|.+|+.+.+++|+..|++.+.|+++||.+.+.++
T Consensus 119 ~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~~~dd~~e~v~~r~~~~~~~~~~l~~~y~~~~~~~ 198 (217)
T 3be4_A 119 EIDDSEIIERISGRCTHPASGRIYHVKYNPPKQPGIDDVTGEPLVWRDDDNAEAVKVRLDVFHKQTAPLVKFYEDLGILK 198 (217)
T ss_dssp ECCHHHHHHHHHTEEECTTTCCEEETTTBCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHHHTTHHHHHHHTTTCEE
T ss_pred ECCHHHHHHHHHcCCCCccccCccccccCCCCccccccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998777899
Q ss_pred EEeCCCChHHHHHHHHHHh
Q 030234 161 QLHAEKPPQEVTSEVQKAL 179 (181)
Q Consensus 161 ~Ida~~~~~~v~~~i~~~l 179 (181)
.|||++++++|+++|.+.|
T Consensus 199 ~id~~~~~~~v~~~i~~~l 217 (217)
T 3be4_A 199 RVNAKLPPKEVTEQIKKIL 217 (217)
T ss_dssp EEETTSCHHHHHHHHHHHC
T ss_pred EEECCCCHHHHHHHHHhhC
Confidence 9999999999999998865
No 8
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=100.00 E-value=1e-34 Score=227.11 Aligned_cols=180 Identities=52% Similarity=0.909 Sum_probs=168.2
Q ss_pred ChhHHHhcCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCccEEEEe
Q 030234 1 MLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNF 80 (181)
Q Consensus 1 llr~~i~~~t~lg~~i~~~l~~G~~vpd~~v~~ll~~~l~~~~~~~G~iLdGfPrt~~Qa~~l~~~l~~~~~~p~~vi~L 80 (181)
++|+++..+|++|+.+++++..|.++|++++.+++..++....+..|||+||||+|..|++.|.+++...+..|+.+|+|
T Consensus 50 li~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~~~~g~ildg~~~~~~~~~~l~~~l~~~~~~~d~vi~L 129 (233)
T 1ak2_A 50 MLRAMVASGSELGKKLKATMDAGKLVSDEMVLELIEKNLETPPCKNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEF 129 (233)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHTSGGGTTCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEE
T ss_pred HHHHHHHcCChhHHHHHHHHHCCCcCCHHHHHHHHHHHHhcccccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEE
Confidence 36777888999999999999999999999999999999987666789999999999999999988777667789999999
Q ss_pred ecChHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCCEE
Q 030234 81 AIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVA 160 (181)
Q Consensus 81 ~~~~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~~r~dd~~~~i~~Rl~~y~~~~~~l~~~y~~~~~l~ 160 (181)
++|.+++.+|+.+|..|+.||+.||..|+||..++.|+.|+.+|.+|.||+.+.+.+|+..|.+.+.|+.+||...+.++
T Consensus 130 ~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~r~d~~~~~~~~r~~~y~~~~~~~~~~y~~~~~~~ 209 (233)
T 1ak2_A 130 SIPDSLLIRRITGRLIHPQSGRSYHEEFNPPKEPMKDDITGEPLIRRSDDNKKALKIRLEAYHTQTTPLVEYYSKRGIHS 209 (233)
T ss_dssp ECCHHHHHHHHHTCEECTTTCCEEBTTTBCCSSTTBCTTTCCBCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEE
T ss_pred ECCHHHHHHHHHcCCcCCccCCccccccCCCccccccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998777899
Q ss_pred EEeCCCChHHHHHHHHHHhc
Q 030234 161 QLHAEKPPQEVTSEVQKALS 180 (181)
Q Consensus 161 ~Ida~~~~~~v~~~i~~~l~ 180 (181)
.|||++++++|+++|.+.|.
T Consensus 210 ~id~~~~~~~v~~~I~~~l~ 229 (233)
T 1ak2_A 210 AIDASQTPDVVFASILAAFS 229 (233)
T ss_dssp EEETTSCHHHHHHHHHHHHH
T ss_pred EEECCCCHHHHHHHHHHHHH
Confidence 99999999999999998874
No 9
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=100.00 E-value=1.5e-34 Score=225.01 Aligned_cols=178 Identities=30% Similarity=0.506 Sum_probs=164.2
Q ss_pred hhHHHhcCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCccEEEEee
Q 030234 2 LRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFA 81 (181)
Q Consensus 2 lr~~i~~~t~lg~~i~~~l~~G~~vpd~~v~~ll~~~l~~~~~~~G~iLdGfPrt~~Qa~~l~~~l~~~~~~p~~vi~L~ 81 (181)
+|+.+..++++|+.+++++.+|.++|++++.+++..++.... ..|||+||||++..|++.|.+++...+..|+.||+|+
T Consensus 35 ~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~-g~~vIlDg~~~~~~~~~~l~~~~~~~~~~~d~vi~l~ 113 (223)
T 2xb4_A 35 FREHIGGGTELGKKAKEFIDRGDLVPDDITIPMVLETLESKG-KDGWLLDGFPRNTVQAQKLFEALQEKGMKINFVIEIL 113 (223)
T ss_dssp HHHHTTTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHC-TTCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEE
T ss_pred HHHHHHcCCHHHHHHHHHHHcCCcCcHHHHHHHHHHHHhccc-CCeEEEeCCcCCHHHHHHHHHHHHhcCCCCCEEEEEE
Confidence 577777889999999999999999999999999999987644 5799999999999999999877666778899999999
Q ss_pred cChHHHHHHHhCCCcCCC-CCCccccCCCCCCCCC-CCCCCCCCcccCCCCcHH-HHHHHHHHHHHhcHHHHH---HHhh
Q 030234 82 IDDAVLEERITGRWIHPS-SGRTYHTKFAPPKVPG-VDDVTGEPLIQRKDDTAA-VLKSRLEAFHKQTEPVID---YYSK 155 (181)
Q Consensus 82 ~~~~~~~~Rl~~r~~~~~-tg~~y~~~~~pp~~~~-~~~~~~~~l~~r~dd~~~-~i~~Rl~~y~~~~~~l~~---~y~~ 155 (181)
+|.+++.+|+.+|..|+. ||+.||..|+||+.++ +|+.||++|.+|.||+.+ .+++|+..|++.+.|+.+ +|.+
T Consensus 114 ~~~e~~~~Rl~~R~~~~~~~g~~y~~~~~~p~~~~~~~~~~~~~l~~r~dd~~e~~i~~rl~~~~~~~~p~~~~~~~y~~ 193 (223)
T 2xb4_A 114 LPREVAKNRIMGRRICKNNPNHPNNIFIDAIKPNGDVCRVCGGALSARADDQDEGAINKRHDIYYNTVDGTLAAAYYYKN 193 (223)
T ss_dssp CCHHHHHHHHHTBCEESSCTTSCCBTTCGGGCCBTTBCTTTCCBEECCGGGGCHHHHHHHHHHHTCTTTSHHHHHHHHHT
T ss_pred CCHHHHHHHHHcccCCccccCCccccccCCCccccccccccccccccCCCCCHHHHHHHHHHHHHHhHHHHHhhHHHHhh
Confidence 999999999999999988 9999999999999988 899999999999999988 999999999999999999 9986
Q ss_pred -----cCCEEEEeCCCChHHHHHHHHHHhc
Q 030234 156 -----KGIVAQLHAEKPPQEVTSEVQKALS 180 (181)
Q Consensus 156 -----~~~l~~Ida~~~~~~v~~~i~~~l~ 180 (181)
.+.++.|||++++++|+++|.+.|+
T Consensus 194 ~a~~~~~~~~~ida~~~~~~v~~~i~~~l~ 223 (223)
T 2xb4_A 194 MAAKEGFVYIELDGEGSIDSIKDTLLAQLA 223 (223)
T ss_dssp THHHHTCEEEEEETTSCHHHHHHHHHHHHC
T ss_pred hhhccCCeEEEEECCCCHHHHHHHHHHHhC
Confidence 5679999999999999999998873
No 10
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=100.00 E-value=6.6e-34 Score=219.61 Aligned_cols=175 Identities=47% Similarity=0.826 Sum_probs=162.3
Q ss_pred hhHHHhcCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCccEEEEee
Q 030234 2 LRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFA 81 (181)
Q Consensus 2 lr~~i~~~t~lg~~i~~~l~~G~~vpd~~v~~ll~~~l~~~~~~~G~iLdGfPrt~~Qa~~l~~~l~~~~~~p~~vi~L~ 81 (181)
+|+++..++++|+.+++++.+|..+|++++.+++..++.+..+..|||+||||++..|+..|. ..+..|+.+|+|+
T Consensus 35 ~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~~~~~~i~dg~~~~~~~~~~l~----~~~~~~d~vi~l~ 110 (214)
T 1e4v_A 35 LRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRNGFLLDGFPRTIPQADAMK----EAGINVDYVLEFD 110 (214)
T ss_dssp HHHHHHHTCTTTGGGHHHHHHTCCCCHHHHHHHHHHHHTSGGGGGCEEEESCCCSHHHHHHHH----HTTCCCSEEEEEE
T ss_pred HHHHHHcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHhccccCCCEEEeCCCCCHHHHHHHH----hcCCCCCEEEEEE
Confidence 577888899999999999999999999999999999998765568999999999999998764 3457899999999
Q ss_pred cChHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhc-----
Q 030234 82 IDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKK----- 156 (181)
Q Consensus 82 ~~~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~~r~dd~~~~i~~Rl~~y~~~~~~l~~~y~~~----- 156 (181)
+|.+++++|+.+|..|+.||..||..++||+.++.|+.|+.+|.+|.+|+++.+.+|+..|++.+.++.+||.+.
T Consensus 111 ~~~e~~~~R~~~R~~~~~~g~~~~~~~~pp~~~~~~~~~~~~l~~r~dd~~~~~~~rl~~y~~~~~~l~~~~~~~~~~~~ 190 (214)
T 1e4v_A 111 VPDELIVDRIVGRRVHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRKDDQEETVRKRLVEYHQMTAPLIGYYSKEAEAGN 190 (214)
T ss_dssp CCHHHHHHHHHTEEEETTTTEEEETTTBCCSSTTBCTTTCCBCBCCTTCSHHHHHHHHHHHHHHTTHHHHHHHHHHHHTS
T ss_pred CCHHHHHHHHHCCcccCCcCCcccccCCCCCccccccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcccccC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred CCEEEEeCCCChHHHHHHHHHHhc
Q 030234 157 GIVAQLHAEKPPQEVTSEVQKALS 180 (181)
Q Consensus 157 ~~l~~Ida~~~~~~v~~~i~~~l~ 180 (181)
+.++.|||++++++|+++|.+.|+
T Consensus 191 ~~~~~ida~~~~~~v~~~i~~~l~ 214 (214)
T 1e4v_A 191 TKYAKVDGTKPVAEVRADLEKILG 214 (214)
T ss_dssp CEEEEEETTSCHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCHHHHHHHHHHHhC
Confidence 579999999999999999998873
No 11
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=100.00 E-value=8.2e-33 Score=214.17 Aligned_cols=178 Identities=50% Similarity=0.874 Sum_probs=162.2
Q ss_pred hhHHHhcCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHc-CCCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCccEEEEe
Q 030234 2 LRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMK-KPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNF 80 (181)
Q Consensus 2 lr~~i~~~t~lg~~i~~~l~~G~~vpd~~v~~ll~~~l~-~~~~~~G~iLdGfPrt~~Qa~~l~~~l~~~~~~p~~vi~L 80 (181)
+|+++..+|++|..+++++.+|..+|++++..++..++. ...+..|||+||||++..|++.|..++...+..||.+|+|
T Consensus 39 ~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L 118 (220)
T 1aky_A 39 LRSQIAKGTQLGLEAKKIMDQGGLVSDDIMVNMIKDELTNNPACKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIEL 118 (220)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHCGGGGSCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEE
T ss_pred HHHHHHcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHHhccccCCCeEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEE
Confidence 577788899999999999999999999999999999987 5445579999999999999999987777778889999999
Q ss_pred ecChHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCC-CCcccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCCE
Q 030234 81 AIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTG-EPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIV 159 (181)
Q Consensus 81 ~~~~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~-~~l~~r~dd~~~~i~~Rl~~y~~~~~~l~~~y~~~~~l 159 (181)
++|.+++++|+.+|..|+.||..||..++||+.+. ||.|+ .+|.+|.+|+++.+.+|+..|.+.+.|+.++|.+.+.+
T Consensus 119 ~~~~e~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~-~d~~~~~~l~~r~dd~~~~~~~rl~~~~~~~~~l~~~y~~~~~~ 197 (220)
T 1aky_A 119 KVDDELLVARITGRLIHPASGRSYHKIFNPPKEDM-KDDVTGEALVQRSDDNADALKKRLAAYHAQTEPIVDFYKKTGIW 197 (220)
T ss_dssp ECCHHHHHHHHHTEEECTTTCCEEETTTBCCSSTT-BCTTTCCBCBCCTTCSHHHHHHHHHHHHHHTTHHHHHHHHHTCE
T ss_pred ECCHHHHHHHHhCCCccCccCCccccccCCCcccc-cccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCE
Confidence 99999999999999999999999999999998774 56554 58999999999999999999999999999999877789
Q ss_pred EEEeCCCChHHHHHHHHHHhc
Q 030234 160 AQLHAEKPPQEVTSEVQKALS 180 (181)
Q Consensus 160 ~~Ida~~~~~~v~~~i~~~l~ 180 (181)
+.|||++++++|+++|.+.|.
T Consensus 198 ~~id~~~~~~~v~~~i~~~l~ 218 (220)
T 1aky_A 198 AGVDASQPPATVWADILNKLG 218 (220)
T ss_dssp EEEETTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCHHHHHHHHHHHHh
Confidence 999999999999999999875
No 12
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=99.97 E-value=1.3e-29 Score=197.18 Aligned_cols=172 Identities=41% Similarity=0.741 Sum_probs=157.4
Q ss_pred hhHHHhcCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCccEEEEee
Q 030234 2 LRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFA 81 (181)
Q Consensus 2 lr~~i~~~t~lg~~i~~~l~~G~~vpd~~v~~ll~~~l~~~~~~~G~iLdGfPrt~~Qa~~l~~~l~~~~~~p~~vi~L~ 81 (181)
+|+....++++|..+++++.+|..+|++....++.+++.+. ...+||+||||+|..|++.|..+ ..|+.+|+|+
T Consensus 42 ~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~l~~~-~~~~~vid~~~~~~~~~~~l~~~-----~~~~~vi~L~ 115 (227)
T 1zd8_A 42 LRDNMLRGTEIGVLAKAFIDQGKLIPDDVMTRLALHELKNL-TQYSWLLDGFPRTLPQAEALDRA-----YQIDTVINLN 115 (227)
T ss_dssp HHHHHHHTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTC-TTSCEEEESCCCSHHHHHHHHTT-----SCCCEEEEEE
T ss_pred HHHhhhcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHhcc-cCCCEEEeCCCCCHHHHHHHHHh-----cCCCEEEEEE
Confidence 56667788999999999999999999999999998888764 35789999999999999876532 4689999999
Q ss_pred cChHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCCEEE
Q 030234 82 IDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQ 161 (181)
Q Consensus 82 ~~~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~~r~dd~~~~i~~Rl~~y~~~~~~l~~~y~~~~~l~~ 161 (181)
+|.+++++|+.+|+.|+.||+.||..++||..++.|+.|+++|.+|.+|+.+.+++|+..|++.+.++.+||.+.+.++.
T Consensus 116 ~~~~~~~~R~~~R~~~~~~~~~y~~~~~pp~~~~~~~~~~~~l~~r~~~~~e~~~~r~~~y~~~~~~l~~~y~~~~~~~~ 195 (227)
T 1zd8_A 116 VPFEVIKQRLTARWIHPASGRVYNIEFNPPKTVGIDDLTGEPLIQREDDKPETVIKRLKAYEDQTKPVLEYYQKKGVLET 195 (227)
T ss_dssp CCHHHHHHHHTCEEEETTTTEEEETTTBCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHTCEEE
T ss_pred CCHHHHHHHHHcCcCCCccCCccccccCCCCcccccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHccCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999987778999
Q ss_pred EeCCCChHHHHHHHHHHhc
Q 030234 162 LHAEKPPQEVTSEVQKALS 180 (181)
Q Consensus 162 Ida~~~~~~v~~~i~~~l~ 180 (181)
|||+ ++++|+++|.+.|.
T Consensus 196 id~~-~~~~v~~~i~~~l~ 213 (227)
T 1zd8_A 196 FSGT-ETNKIWPYVYAFLQ 213 (227)
T ss_dssp EECS-SHHHHHHHHHHHHT
T ss_pred EeCC-CHHHHHHHHHHHHH
Confidence 9999 99999999998875
No 13
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=99.95 E-value=3.4e-27 Score=182.77 Aligned_cols=169 Identities=34% Similarity=0.644 Sum_probs=149.7
Q ss_pred hhHHHhcCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCC-CCCeEecCCCCCHHHHHHHHHHHHhcCCCccEEEEe
Q 030234 2 LRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSC-QKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNF 80 (181)
Q Consensus 2 lr~~i~~~t~lg~~i~~~l~~G~~vpd~~v~~ll~~~l~~~~~-~~G~iLdGfPrt~~Qa~~l~~~l~~~~~~p~~vi~L 80 (181)
+|++...+++.|..+++++.+|..+|++.+..++.+++....+ ..|||+||||++..|+..|. ..+..|+.||+|
T Consensus 40 ~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vidg~~~~~~~~~~l~----~~~~~~~~vi~L 115 (222)
T 1zak_A 40 LRAEIAAGSENGKRAKEFMEKGQLVPDEIVVNMVKERLRQPDAQENGWLLDGYPRSYSQAMALE----TLEIRPDTFILL 115 (222)
T ss_dssp HHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHSHHHHHTCEEEESCCCSHHHHHHHH----TTTCCCSEEEEE
T ss_pred HHHHHHcCCchhHHHHHHHHcCCcCCHHHHHHHHHHHHhhccccCCcEEEECCCCCHHHHHHHH----HcCCCCCEEEEE
Confidence 5666778899999999999999999999999999988876543 47999999999999998764 345679999999
Q ss_pred ecChHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCCEE
Q 030234 81 AIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVA 160 (181)
Q Consensus 81 ~~~~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~~r~dd~~~~i~~Rl~~y~~~~~~l~~~y~~~~~l~ 160 (181)
++|.+++.+|+.+|..|+.||+.||..++||+.+..+ .+|.+|.+|..+.+++|+..|.....++.++|.. .++
T Consensus 116 ~~~~~~~~~R~~~r~~~~~~g~~~~~~~~pp~~~~~~----~~l~~r~~d~~~~i~~Rl~~~~~~~~~l~~~y~~--~~~ 189 (222)
T 1zak_A 116 DVPDELLVERVVGRRLDPVTGKIYHLKYSPPENEEIA----SRLTQRFDDTEEKVKLRLETYYQNIESLLSTYEN--IIV 189 (222)
T ss_dssp ECCHHHHHHHHTTEEECTTTCCEEESSSSCCCSSGGG----GGCBCCTTCCTTHHHHHHHHHHHHHHHHHHTTCC--CEE
T ss_pred ECCHHHHHHHHHcCCcccccCCccccccCCCcccccc----cccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHh--cEE
Confidence 9999999999999999999999999999999876654 4688888899999999999999999999999964 588
Q ss_pred EEeCCCChHHHHHHHHHHhc
Q 030234 161 QLHAEKPPQEVTSEVQKALS 180 (181)
Q Consensus 161 ~Ida~~~~~~v~~~i~~~l~ 180 (181)
.||++.++++|+++|.+.|.
T Consensus 190 ~Id~~~~~~ev~~~I~~~l~ 209 (222)
T 1zak_A 190 KVQGDATVDAVFAKIDELLG 209 (222)
T ss_dssp EEECSSCHHHHHHHHHHHHH
T ss_pred EEECCCCHHHHHHHHHHHHH
Confidence 99999999999999998764
No 14
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=99.87 E-value=7.1e-21 Score=144.90 Aligned_cols=146 Identities=38% Similarity=0.699 Sum_probs=129.3
Q ss_pred hhHHHhcCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCccEEEEee
Q 030234 2 LRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFA 81 (181)
Q Consensus 2 lr~~i~~~t~lg~~i~~~l~~G~~vpd~~v~~ll~~~l~~~~~~~G~iLdGfPrt~~Qa~~l~~~l~~~~~~p~~vi~L~ 81 (181)
+|+.+..++++|..+++++.+|..+|++.+..++.+++....+..|||+||||++..|++.|..++...+..|+.+|+|+
T Consensus 55 ~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vIldg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~ 134 (201)
T 2cdn_A 55 FRRNIEEGTKLGVEAKRYLDAGDLVPSDLTNELVDDRLNNPDAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFR 134 (201)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSGGGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEE
T ss_pred HHHHHHcCChHHHHHHHHHHcCCcccHHHHHHHHHHHHhcccCCCeEEEECCCCCHHHHHHHHHHHHhcCCCCCEEEEEE
Confidence 46667788999999999999999999999999999988765455789999999999999999888877777899999999
Q ss_pred cChHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCCEEE
Q 030234 82 IDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQ 161 (181)
Q Consensus 82 ~~~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~~r~dd~~~~i~~Rl~~y~~~~~~l~~~y~~~~~l~~ 161 (181)
+|.+++.+|+.+|. |++++.+.+.+|+..|.....++.++|. ..++.
T Consensus 135 ~~~e~~~~Rl~~R~-------------------------------r~~~~~e~~~~r~~~~~~~~~~~~~~~~--~~~~~ 181 (201)
T 2cdn_A 135 VSEEVLLERLKGRG-------------------------------RADDTDDVILNRMKVYRDETAPLLEYYR--DQLKT 181 (201)
T ss_dssp CCHHHHHHHHHHHC-------------------------------CTTCSHHHHHHHHHHHHHHTTTHHHHTT--TTEEE
T ss_pred CCHHHHHHHHHcCC-------------------------------CCCCCHHHHHHHHHHHHHhhHHHHHHhc--CcEEE
Confidence 99999999998762 4556788999999999999999999993 47889
Q ss_pred EeCCCChHHHHHHHHHHhc
Q 030234 162 LHAEKPPQEVTSEVQKALS 180 (181)
Q Consensus 162 Ida~~~~~~v~~~i~~~l~ 180 (181)
||++.++++++++|.+.|+
T Consensus 182 Id~~~~~eev~~~I~~~l~ 200 (201)
T 2cdn_A 182 VDAVGTMDEVFARALRALG 200 (201)
T ss_dssp EECCSCHHHHHHHHHHHTT
T ss_pred EeCCCCHHHHHHHHHHHHc
Confidence 9999999999999999875
No 15
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.87 E-value=1.3e-20 Score=147.95 Aligned_cols=171 Identities=36% Similarity=0.677 Sum_probs=148.5
Q ss_pred hHHHhcCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCccEEEEeec
Q 030234 3 RAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAI 82 (181)
Q Consensus 3 r~~i~~~t~lg~~i~~~l~~G~~vpd~~v~~ll~~~l~~~~~~~G~iLdGfPrt~~Qa~~l~~~l~~~~~~p~~vi~L~~ 82 (181)
++....++++|..++.++.+|.++|+..+.+.+...+... ...||++||||++..|++.+... ..++.+|+|++
T Consensus 63 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~-~~~~~il~g~~~~~~~~~~l~~~-----~~~~~vi~L~~ 136 (246)
T 2bbw_A 63 RENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELENR-RGQHWLLDGFPRTLGQAEALDKI-----CEVDLVISLNI 136 (246)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTC-TTSCEEEESCCCSHHHHHHHHTT-----CCCCEEEEEEC
T ss_pred HHHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc-CCCeEEEECCCCCHHHHHHHHhh-----cCCCEEEEEEC
Confidence 3334456788999999999999999999999998877654 34789999999998888766421 46889999999
Q ss_pred ChHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCCEEEE
Q 030234 83 DDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQL 162 (181)
Q Consensus 83 ~~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~~r~dd~~~~i~~Rl~~y~~~~~~l~~~y~~~~~l~~I 162 (181)
|.+++++|+.+|+.++.||+.++...++|+....|+.|++++..+.+++.+.+.+++..|.+...++.+||.+.+.++.|
T Consensus 137 ~~~~~l~r~~~r~~~~lSgrv~al~~~~P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~~~~~~~v~~~~~~~~~~~~i 216 (246)
T 2bbw_A 137 PFETLKDRLSRRWIHPPSGRVYNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKDVAKPVIELYKSRGVLHQF 216 (246)
T ss_dssp CHHHHHHHHHTEEEETTTTEEEETTTSCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred CHHHHHHHHHcCCCcCCCCCccccccCCCcccccccccccccccCCCCcHHHHHHHHHHHHHhHHHHHHHHhhcCcEEEE
Confidence 99999999999999999998877767888887788889999999988899999999999999999999999988889999
Q ss_pred eCCCChHHHHHHHHHHhc
Q 030234 163 HAEKPPQEVTSEVQKALS 180 (181)
Q Consensus 163 da~~~~~~v~~~i~~~l~ 180 (181)
||+.+ ++|+++|.++|.
T Consensus 217 d~~~~-~~v~~~i~~~l~ 233 (246)
T 2bbw_A 217 SGTET-NKIWPYVYTLFS 233 (246)
T ss_dssp ECSCH-HHHHHHHHHHHH
T ss_pred CCCCc-HHHHHHHHHHHH
Confidence 99999 999999998874
No 16
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=99.84 E-value=2.1e-19 Score=134.68 Aligned_cols=147 Identities=36% Similarity=0.645 Sum_probs=127.1
Q ss_pred hhHHHhcCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCccEEEEee
Q 030234 2 LRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFA 81 (181)
Q Consensus 2 lr~~i~~~t~lg~~i~~~l~~G~~vpd~~v~~ll~~~l~~~~~~~G~iLdGfPrt~~Qa~~l~~~l~~~~~~p~~vi~L~ 81 (181)
+|+++..+++.|..+++++.+|..+|++.+..++..++. .|||+||||++..|+..+...+...+..|+.+|+|+
T Consensus 39 ~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~l~-----~~~i~dg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~ 113 (186)
T 3cm0_A 39 LRDHVARGTPLGERVRPIMERGDLVPDDLILELIREELA-----ERVIFDGFPRTLAQAEALDRLLSETGTRLLGVVLVE 113 (186)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHCC-----SEEEEESCCCSHHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred HHHHHHcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHhc-----CCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEe
Confidence 466677789999999999999999999999999888774 359999999999999888776766666789999999
Q ss_pred cChHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCCEEE
Q 030234 82 IDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQ 161 (181)
Q Consensus 82 ~~~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~~r~dd~~~~i~~Rl~~y~~~~~~l~~~y~~~~~l~~ 161 (181)
+|.+++.+|+.+|.. ...|.+++.+.+.+|+..|.....|+.++|...+.++.
T Consensus 114 ~~~e~~~~R~~~R~~---------------------------~~~r~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~~~~ 166 (186)
T 3cm0_A 114 VPEEELVRRILRRAE---------------------------LEGRSDDNEETVRRRLEVYREKTEPLVGYYEARGVLKR 166 (186)
T ss_dssp CCHHHHHHHHHHHHH---------------------------HHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred CCHHHHHHHHHhccc---------------------------cCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcEEE
Confidence 999999999987741 01256778899999999999999999999987667899
Q ss_pred EeCCCChHHHHHHHHHHhc
Q 030234 162 LHAEKPPQEVTSEVQKALS 180 (181)
Q Consensus 162 Ida~~~~~~v~~~i~~~l~ 180 (181)
||++.++++++++|.+.++
T Consensus 167 id~~~~~~~v~~~i~~~l~ 185 (186)
T 3cm0_A 167 VDGLGTPDEVYARIRAALG 185 (186)
T ss_dssp EECCSCHHHHHHHHHHHHT
T ss_pred EECCCCHHHHHHHHHHHhc
Confidence 9999999999999998874
No 17
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=99.81 E-value=9.3e-19 Score=131.93 Aligned_cols=148 Identities=34% Similarity=0.542 Sum_probs=124.2
Q ss_pred hhHHHhcCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCC-CCCCeEecCCCCCHHHHHHHHHHHHhcCCCccEEEEe
Q 030234 2 LRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPS-CQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNF 80 (181)
Q Consensus 2 lr~~i~~~t~lg~~i~~~l~~G~~vpd~~v~~ll~~~l~~~~-~~~G~iLdGfPrt~~Qa~~l~~~l~~~~~~p~~vi~L 80 (181)
+|+....+++.|..+++++.+|+.+|++++..++...+.... ...|||+||||++..|++.|...+ ..|+.+|+|
T Consensus 44 ~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~vi~d~~~~~~~~~~~~~~~~----~~~~~vi~l 119 (196)
T 2c95_A 44 LRSEVSSGSARGKKLSEIMEKGQLVPLETVLDMLRDAMVAKVNTSKGFLIDGYPREVQQGEEFERRI----GQPTLLLYV 119 (196)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHTTTCSCEEEESCCCSHHHHHHHHHHT----CCCSEEEEE
T ss_pred HHHHHHcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhccccCCcEEEeCCCCCHHHHHHHHHhc----CCCCEEEEE
Confidence 456666788999999999999999999999998888775432 347899999999999998776532 468999999
Q ss_pred ecChHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCCEE
Q 030234 81 AIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVA 160 (181)
Q Consensus 81 ~~~~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~~r~dd~~~~i~~Rl~~y~~~~~~l~~~y~~~~~l~ 160 (181)
++|.+++.+|+.+|... + .|.+++.+.+.+|+..|.....++.++|...+.++
T Consensus 120 ~~~~e~~~~R~~~R~~~--~-------------------------~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 172 (196)
T 2c95_A 120 DAGPETMTQRLLKRGET--S-------------------------GRVDDNEETIKKRLETYYKATEPVIAFYEKRGIVR 172 (196)
T ss_dssp ECCHHHHHHHHHHHHTS--S-------------------------SCGGGSHHHHHHHHHHHHHHTHHHHHHHHHHTCEE
T ss_pred ECCHHHHHHHHHccCCc--C-------------------------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcEE
Confidence 99999999999887421 0 14556788999999999999999999998766788
Q ss_pred EEeCCCChHHHHHHHHHHhc
Q 030234 161 QLHAEKPPQEVTSEVQKALS 180 (181)
Q Consensus 161 ~Ida~~~~~~v~~~i~~~l~ 180 (181)
.||++.++++++++|.+.+.
T Consensus 173 ~Id~~~~~e~v~~~i~~~l~ 192 (196)
T 2c95_A 173 KVNAEGSVDSVFSQVCTHLD 192 (196)
T ss_dssp EEECCSCHHHHHHHHHHHHH
T ss_pred EEECCCCHHHHHHHHHHHHH
Confidence 99999999999999998774
No 18
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=99.81 E-value=2.8e-18 Score=128.66 Aligned_cols=150 Identities=28% Similarity=0.402 Sum_probs=128.0
Q ss_pred hhHHHhcCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCccEEEEee
Q 030234 2 LRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFA 81 (181)
Q Consensus 2 lr~~i~~~t~lg~~i~~~l~~G~~vpd~~v~~ll~~~l~~~~~~~G~iLdGfPrt~~Qa~~l~~~l~~~~~~p~~vi~L~ 81 (181)
+|++...+++.|..+.+++.+|...|+++...++...+... ...++|+||||++..|+..+...+.. +..|+.+|+|+
T Consensus 41 ~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~i~~~-~~~~vi~d~~~~~~~~~~~~~~~~~~-~~~~~~vi~l~ 118 (194)
T 1qf9_A 41 LRQEQQSGSKDGEMIATMIKNGEIVPSIVTVKLLKNAIDAN-QGKNFLVDGFPRNEENNNSWEENMKD-FVDTKFVLFFD 118 (194)
T ss_dssp HHHHHHTTCTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHTS-TTCCEEEETCCCSHHHHHHHHHHHTT-TCEEEEEEEEE
T ss_pred HHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhc-CCCCEEEeCcCCCHHHHHHHHHHHhc-cCCCCEEEEEE
Confidence 46666678999999999999999999999999999888765 35789999999999999888655432 24789999999
Q ss_pred cChHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCCEEE
Q 030234 82 IDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQ 161 (181)
Q Consensus 82 ~~~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~~r~dd~~~~i~~Rl~~y~~~~~~l~~~y~~~~~l~~ 161 (181)
+|.+++.+|+.+|.. . ..|.+++.+.+.+|+..|.+...++.++|...+.++.
T Consensus 119 ~~~e~~~~R~~~R~~--~-------------------------~~r~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~ 171 (194)
T 1qf9_A 119 CPEEVMTQRLLKRGE--S-------------------------SGRSDDNIESIKKRFNTFNVQTKLVIDHYNKFDKVKI 171 (194)
T ss_dssp CCHHHHHHHHHHHHT--T-------------------------SCCTTCSHHHHHHHHHHHHHTHHHHHHHHHHTTCEEE
T ss_pred CCHHHHHHHHHhccc--c-------------------------CCCCCCCHHHHHHHHHHHHHhHHHHHHHHHhCCCEEE
Confidence 999999999998742 0 1267788999999999999999999999987677899
Q ss_pred EeCCCChHHHHHHHHHHhc
Q 030234 162 LHAEKPPQEVTSEVQKALS 180 (181)
Q Consensus 162 Ida~~~~~~v~~~i~~~l~ 180 (181)
||++.++++++++|.+.+.
T Consensus 172 id~~~~~~~~~~~i~~~l~ 190 (194)
T 1qf9_A 172 IPANRDVNEVYNDVENLFK 190 (194)
T ss_dssp EECSSCHHHHHHHHHHHHH
T ss_pred EECCCCHHHHHHHHHHHHH
Confidence 9999999999999998774
No 19
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=99.80 E-value=2.7e-18 Score=128.99 Aligned_cols=145 Identities=25% Similarity=0.456 Sum_probs=120.8
Q ss_pred cCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCC----CCCCCeEecCCCCCHHHHHHHHHHHHhcCCCccEEEEeecC
Q 030234 8 AKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKP----SCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAID 83 (181)
Q Consensus 8 ~~t~lg~~i~~~l~~G~~vpd~~v~~ll~~~l~~~----~~~~G~iLdGfPrt~~Qa~~l~~~l~~~~~~p~~vi~L~~~ 83 (181)
.++.+|..++.++.+|..+|++++..++..++... ....+||+||||++..|++.+...+.. ...|+.+|+|++|
T Consensus 45 ~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~vi~dg~~~~~~~~~~~~~~~~~-~~~~~~~i~l~~~ 123 (196)
T 1tev_A 45 PDSQYGELIEKYIKEGKIVPVEITISLLKREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDG-KADVSFVLFFDCN 123 (196)
T ss_dssp TTSTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHCTTCCEEEEESCCCSHHHHHHHHHHHTT-TCEEEEEEEEECC
T ss_pred cCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHHhhhccccCCCeEEEeCCCCCHHHHHHHHHHhcc-cCCCCEEEEEECC
Confidence 46788999999999999999999888887665432 224689999999999998876554432 3468899999999
Q ss_pred hHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCCEEEEe
Q 030234 84 DAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLH 163 (181)
Q Consensus 84 ~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~~r~dd~~~~i~~Rl~~y~~~~~~l~~~y~~~~~l~~Id 163 (181)
.+++.+|+.+|.. ...|.+++.+.+.+|+..|.+...|+.++|.+.+.++.||
T Consensus 124 ~e~~~~R~~~R~~---------------------------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~id 176 (196)
T 1tev_A 124 NEICIERCLERGK---------------------------SSGRSDDNRESLEKRIQTYLQSTKPIIDLYEEMGKVKKID 176 (196)
T ss_dssp HHHHHHHHHHHHH---------------------------TSSCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHcccc---------------------------cCCCCCCCHHHHHHHHHHHHHhHHHHHHHHHhcCCEEEEE
Confidence 9999999988742 1137778899999999999999999999998777788999
Q ss_pred CCCChHHHHHHHHHHhc
Q 030234 164 AEKPPQEVTSEVQKALS 180 (181)
Q Consensus 164 a~~~~~~v~~~i~~~l~ 180 (181)
++.++++|+++|.+.|.
T Consensus 177 ~~~~~~~v~~~i~~~l~ 193 (196)
T 1tev_A 177 ASKSVDEVFDEVVQIFD 193 (196)
T ss_dssp TTSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999999998874
No 20
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=99.79 E-value=1.6e-18 Score=131.76 Aligned_cols=148 Identities=26% Similarity=0.488 Sum_probs=122.3
Q ss_pred hhHHHh-cCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCC--CCCCeEecCCCCCHHHHHHHHHHHHhcCCCccEEE
Q 030234 2 LRAAVA-AKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPS--CQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVL 78 (181)
Q Consensus 2 lr~~i~-~~t~lg~~i~~~l~~G~~vpd~~v~~ll~~~l~~~~--~~~G~iLdGfPrt~~Qa~~l~~~l~~~~~~p~~vi 78 (181)
+|++.. .++.+|+.++.++.+|..+|++++..++.+.+...- ...+||+||||++..|+..|+..+ ..|+.+|
T Consensus 50 ~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~i~~~l~~g~~~~i~dg~~~~~~~~~~~~~~~----~~~~~~i 125 (203)
T 1ukz_A 50 LRAEQGRAGSQYGELIKNCIKEGQIVPQEITLALLRNAISDNVKANKHKFLIDGFPRKMDQAISFERDI----VESKFIL 125 (203)
T ss_dssp HHHHHHSTTCSCHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTCCEEEEETCCCSHHHHHHHHHHT----CCCSEEE
T ss_pred HHHHHhccCCHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhhhccCCCeEEEeCCCCCHHHHHHHHHhc----CCCCEEE
Confidence 344443 578899999999999999999999888887765321 126899999999999999876542 3589999
Q ss_pred EeecChHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCC
Q 030234 79 NFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGI 158 (181)
Q Consensus 79 ~L~~~~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~~r~dd~~~~i~~Rl~~y~~~~~~l~~~y~~~~~ 158 (181)
+|++|.+++.+|+.+|... ..|.+|+.+.+.+|+..|.+...|+.++|...+.
T Consensus 126 ~l~~~~e~~~~Rl~~R~~~---------------------------~~~~~~~~e~~~~r~~~~~~~~~~~~~~~~~~~~ 178 (203)
T 1ukz_A 126 FFDCPEDIMLERLLERGKT---------------------------SGRSDDNIESIKKRFNTFKETSMPVIEYFETKSK 178 (203)
T ss_dssp EEECCHHHHHHHHHHHHHH---------------------------HCCTTCSHHHHHHHHHHHHHTTHHHHHHHHTTTC
T ss_pred EEECCHHHHHHHHHhcccc---------------------------CCCCCCCHHHHHHHHHHHHHhhHHHHHHHHhcCc
Confidence 9999999999999887420 1255678899999999999999999999987678
Q ss_pred EEEEeCCCChHHHHHHHHHHhc
Q 030234 159 VAQLHAEKPPQEVTSEVQKALS 180 (181)
Q Consensus 159 l~~Ida~~~~~~v~~~i~~~l~ 180 (181)
++.||++.++++++++|.+.|.
T Consensus 179 vi~id~~~~~e~v~~~i~~~l~ 200 (203)
T 1ukz_A 179 VVRVRCDRSVEDVYKDVQDAIR 200 (203)
T ss_dssp EEEEECSSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHHh
Confidence 8899999999999999998874
No 21
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=99.79 E-value=3.2e-18 Score=129.25 Aligned_cols=148 Identities=26% Similarity=0.460 Sum_probs=123.1
Q ss_pred hhHHHhcCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCC-CCCCeEecCCCCCHHHHHHHHHHHHhcCCCccEEEEe
Q 030234 2 LRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPS-CQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNF 80 (181)
Q Consensus 2 lr~~i~~~t~lg~~i~~~l~~G~~vpd~~v~~ll~~~l~~~~-~~~G~iLdGfPrt~~Qa~~l~~~l~~~~~~p~~vi~L 80 (181)
+|++...+++.|..+++++.+|..+|++++..++.+.+.... ...+||+||||++..|+..|... . ..|+.+|+|
T Consensus 47 ~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~vi~dg~~~~~~~~~~l~~~---~-~~~~~~i~l 122 (199)
T 2bwj_A 47 LREELASESERSKLIRDIMERGDLVPSGIVLELLKEAMVASLGDTRGFLIDGYPREVKQGEEFGRR---I-GDPQLVICM 122 (199)
T ss_dssp HHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHTTSCSCEEEETCCSSHHHHHHHHHH---T-CCCSEEEEE
T ss_pred HHHHHHhCCHHHHHHHHHHHcCCcCCHHHHHHHHHHHHhcccccCccEEEeCCCCCHHHHHHHHHh---c-CCCCEEEEE
Confidence 466666789999999999999999999999999888775432 34789999999999998877542 1 268999999
Q ss_pred ecChHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCCEE
Q 030234 81 AIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVA 160 (181)
Q Consensus 81 ~~~~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~~r~dd~~~~i~~Rl~~y~~~~~~l~~~y~~~~~l~ 160 (181)
++|.+++.+|+.+|... + .|.+++.+.+.+|+..|.....++.++|...+.++
T Consensus 123 ~~~~~~~~~R~~~R~~~--~-------------------------~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 175 (199)
T 2bwj_A 123 DCSADTMTNRLLQMSRS--S-------------------------LPVDDTTKTIAKRLEAYYRASIPVIAYYETKTQLH 175 (199)
T ss_dssp ECCHHHHHHHHHHTCCC--C-------------------------SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSEEE
T ss_pred ECCHHHHHHHHHcCCCC--C-------------------------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEE
Confidence 99999999999988521 0 14455678899999999999999999998766678
Q ss_pred EEeCCCChHHHHHHHHHHhc
Q 030234 161 QLHAEKPPQEVTSEVQKALS 180 (181)
Q Consensus 161 ~Ida~~~~~~v~~~i~~~l~ 180 (181)
.||++.++++++++|.+.|.
T Consensus 176 ~id~~~~~e~v~~~i~~~l~ 195 (199)
T 2bwj_A 176 KINAEGTPEDVFLQLCTAID 195 (199)
T ss_dssp EEETTSCHHHHHHHHHHHHH
T ss_pred EEECCCCHHHHHHHHHHHHH
Confidence 99999999999999998764
No 22
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=99.30 E-value=2.1e-11 Score=94.72 Aligned_cols=141 Identities=16% Similarity=0.172 Sum_probs=92.9
Q ss_pred hcCChHHHHHHHHHHCCCCCCHHHHHHHH-HHHHcCC-----C---CCCCeEec----------CCCCCHHHHH--HHHH
Q 030234 7 AAKTPLGIKAKEAMDKGELVSDDLVVGII-DEAMKKP-----S---CQKGFILD----------GFPRTEVQAQ--KLDE 65 (181)
Q Consensus 7 ~~~t~lg~~i~~~l~~G~~vpd~~v~~ll-~~~l~~~-----~---~~~G~iLd----------GfPrt~~Qa~--~l~~ 65 (181)
..++++|+.+++++.+|..+++....-+. ..|.... + ....+|+| ||||+..|+. .|..
T Consensus 62 p~~~~~g~~i~~~~~~~~~~~~~~~~ll~~a~r~~~~~~~i~~~l~~g~~Vi~DRy~~s~~ayqg~~r~~~~~~~~~l~~ 141 (229)
T 4eaq_A 62 PGGVPTGEEIRKIVLEGNDMDIRTEAMLFAASRREHLVLKVIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNE 141 (229)
T ss_dssp TTTCHHHHHHHHHTTC---CCHHHHHHHHHHHHHHHCCCCCHHHHHTTCEEEEECCHHHHCCCCCCCSCSCHHHHHHHHH
T ss_pred CCCCchHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCchhHHHHHHHhhcCCCHHHHHHHHH
Confidence 35789999999999999875554432222 3333221 0 12468999 9999988764 4443
Q ss_pred HHHhcCCCccEEEEeecChHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHHh
Q 030234 66 MLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQ 145 (181)
Q Consensus 66 ~l~~~~~~p~~vi~L~~~~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~~r~dd~~~~i~~Rl~~y~~~ 145 (181)
+ ...+..||++|+|++|.+++.+|+.+|... ..|.++....+.+|+..+...
T Consensus 142 ~-~~~~~~pd~vi~L~~~~e~~~~R~~~R~~~---------------------------~dr~e~~~~~~~~rv~~~y~~ 193 (229)
T 4eaq_A 142 F-AINGLYPDLTIYLNVSAEVGRERIIKNSRD---------------------------QNRLDQEDLKFHEKVIEGYQE 193 (229)
T ss_dssp H-HHTTCCCSEEEEEECCHHHHHHHHHHC--------------------------------CCCHHHHHHHHHHHHHHHH
T ss_pred H-HhcCCCCCEEEEEeCCHHHHHHHHHhcCCC---------------------------ccchhhhhHHHHHHHHHHHHH
Confidence 2 334578999999999999999999987421 124454555666676653332
Q ss_pred cHHHHHHHhhcCCEEEEeCCCChHHHHHHHHHHhc
Q 030234 146 TEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 180 (181)
Q Consensus 146 ~~~l~~~y~~~~~l~~Ida~~~~~~v~~~i~~~l~ 180 (181)
+ .+.|. +.++.|||++++++|+++|.+.|.
T Consensus 194 l---~~~~~--~~~~vIDa~~s~eev~~~I~~~l~ 223 (229)
T 4eaq_A 194 I---IHNES--QRFKSVNADQPLENVVEDTYQTII 223 (229)
T ss_dssp H---TTTCT--TTEEEEETTSCHHHHHHHHHHHHH
T ss_pred H---HHhCC--CCEEEEeCCCCHHHHHHHHHHHHH
Confidence 2 12332 468999999999999999998774
No 23
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=99.03 E-value=1.4e-08 Score=73.90 Aligned_cols=115 Identities=12% Similarity=0.126 Sum_probs=80.9
Q ss_pred CHHHHHHHHHHHHcCCCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCccEEEEeecChHHHHHHHhCCCcCCCCCCcccc
Q 030234 27 SDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHT 106 (181)
Q Consensus 27 pd~~v~~ll~~~l~~~~~~~G~iLdGfPrt~~Qa~~l~~~l~~~~~~p~~vi~L~~~~~~~~~Rl~~r~~~~~tg~~y~~ 106 (181)
+++.+.+++...+.. ....+||+||| ++..|+..|.+.. ..|+.+|+|++|.+++.+|+..|.. +
T Consensus 61 ~~~~~~~~~~~~l~~-~~~~~vi~dg~-~~~~~~~~l~~~~----~~~~~~i~l~~~~~~~~~R~~~R~~-~-------- 125 (179)
T 3lw7_A 61 GDGVVARLCVEELGT-SNHDLVVFDGV-RSLAEVEEFKRLL----GDSVYIVAVHSPPKIRYKRMIERLR-S-------- 125 (179)
T ss_dssp CTTHHHHHHHHHHCS-CCCSCEEEECC-CCHHHHHHHHHHH----CSCEEEEEEECCHHHHHHHHHTCC-----------
T ss_pred CHHHHHHHHHHHHHh-cCCCeEEEeCC-CCHHHHHHHHHHh----CCCcEEEEEECCHHHHHHHHHhccC-C--------
Confidence 344566666666744 33578999999 9999999887653 3688999999999999999998841 0
Q ss_pred CCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCCEEEEeCCCChHHHHHHHHHHhc
Q 030234 107 KFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 180 (181)
Q Consensus 107 ~~~pp~~~~~~~~~~~~l~~r~dd~~~~i~~Rl~~y~~~~~~l~~~y~~~~~l~~Ida~~~~~~v~~~i~~~l~ 180 (181)
....+.+.+.+|+..+.. .++..++... -+.||++++++++.++|.+.+.
T Consensus 126 --------------------~~~~~~~~~~~r~~~~~~--~~~~~~~~~a--d~vId~~~~~~~~~~~i~~~l~ 175 (179)
T 3lw7_A 126 --------------------DDSKEISELIRRDREELK--LGIGEVIAMA--DYIITNDSNYEEFKRRCEEVTD 175 (179)
T ss_dssp ----------------------CCCHHHHHHHHHHHHH--HTHHHHHHTC--SEEEECCSCHHHHHHHHHHHHH
T ss_pred --------------------CCcchHHHHHHHHHhhhc--cChHhHHHhC--CEEEECCCCHHHHHHHHHHHHH
Confidence 012456777777754322 2233444332 2568888899999999988774
No 24
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=99.02 E-value=1.5e-08 Score=75.27 Aligned_cols=128 Identities=23% Similarity=0.265 Sum_probs=84.7
Q ss_pred CChHHHHHHHHHHCCCCCCHHHHH-----------HHHHHHHcCCCCCCCeEec----------CCCCCHH--HHHHHHH
Q 030234 9 KTPLGIKAKEAMDKGELVSDDLVV-----------GIIDEAMKKPSCQKGFILD----------GFPRTEV--QAQKLDE 65 (181)
Q Consensus 9 ~t~lg~~i~~~l~~G~~vpd~~v~-----------~ll~~~l~~~~~~~G~iLd----------GfPrt~~--Qa~~l~~ 65 (181)
++++|..+++++.+|.+.|+.... +++...+.+ ...+|+| |||++.. ++..+..
T Consensus 39 ~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~l~~~i~~~l~~---~~~vi~dr~~~~~~~~~g~~~~~~~~~~~~~~~ 115 (195)
T 2pbr_A 39 GTKVGEVLREILLTEELDERTELLLFEASRSKLIEEKIIPDLKR---DKVVILDRFVLSTIAYQGYGKGLDVEFIKNLNE 115 (195)
T ss_dssp SSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTHHHHHHT---TCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHH
T ss_pred CCchHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhC---CCEEEECcchhHHHHHccccCCCCHHHHHHHHH
Confidence 467898999999889888875432 222222322 1345566 8998654 4444433
Q ss_pred HHHhcCCCccEEEEeecChHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHH-HHHHH
Q 030234 66 MLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRL-EAFHK 144 (181)
Q Consensus 66 ~l~~~~~~p~~vi~L~~~~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~~r~dd~~~~i~~Rl-~~y~~ 144 (181)
++ ..+..|+.+|+|++|.+++.+|+.+|. |.+ ..+ +.+|+ ..|.+
T Consensus 116 ~~-~~~~~~d~vi~l~~~~e~~~~Rl~~r~-------------------------------~~~-~~~-~~~~~~~~~~~ 161 (195)
T 2pbr_A 116 FA-TRGVKPDITLLLDIPVDIALRRLKEKN-------------------------------RFE-NKE-FLEKVRKGFLE 161 (195)
T ss_dssp HH-HTTCCCSEEEEEECCHHHHHHHHHTTT-------------------------------CCC-CHH-HHHHHHHHHHH
T ss_pred Hh-hcCCCCCEEEEEeCCHHHHHHHhhccC-------------------------------ccc-hHH-HHHHHHHHHHH
Confidence 32 234579999999999999999998541 222 334 44444 45655
Q ss_pred hcHHHHHHHhhcCCEEEEeCCCChHHHHHHHHHHhc
Q 030234 145 QTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 180 (181)
Q Consensus 145 ~~~~l~~~y~~~~~l~~Ida~~~~~~v~~~i~~~l~ 180 (181)
.. .+| +.++.||++.++++++++|.+.+.
T Consensus 162 ~~----~~~---~~~~~Id~~~~~~~~~~~i~~~l~ 190 (195)
T 2pbr_A 162 LA----KEE---ENVVVIDASGEEEEVFKEILRALS 190 (195)
T ss_dssp HH----HHS---TTEEEEETTSCHHHHHHHHHHHHH
T ss_pred HH----hhC---CCEEEEECCCCHHHHHHHHHHHHH
Confidence 43 233 368899999999999999998774
No 25
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=98.91 E-value=3.4e-08 Score=75.41 Aligned_cols=138 Identities=14% Similarity=0.220 Sum_probs=80.7
Q ss_pred cCChHHHHHHHHHHCCCCCCHHHHHHHH-HHHHc---CC---CCCCC--eEecC----------CCCCH--HHHHHHHHH
Q 030234 8 AKTPLGIKAKEAMDKGELVSDDLVVGII-DEAMK---KP---SCQKG--FILDG----------FPRTE--VQAQKLDEM 66 (181)
Q Consensus 8 ~~t~lg~~i~~~l~~G~~vpd~~v~~ll-~~~l~---~~---~~~~G--~iLdG----------fPrt~--~Qa~~l~~~ 66 (181)
.+|++|..+++++.+|..++.....-|. ..|.. +. ...+| +|.|. +.+.. +....+...
T Consensus 39 ~~t~~g~~ir~~l~~~~~~~~~~~~lLf~a~R~~~~~~~i~p~l~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~ 118 (205)
T 4hlc_A 39 GGVPTGEEIRKIVLEGNDMDIRTEAMLFAASRREHLVLKVIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEF 118 (205)
T ss_dssp TTCHHHHHHHHHHHSSCCCCHHHHHHHHHHHHHHHHHHTHHHHHHTTCEEEEECCHHHHHHHTTTTTSSCHHHHHHHHHH
T ss_pred CCChHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCEEEecCcccchHHHHhccccchHHHHHHHHHH
Confidence 3689999999999999988876554332 12211 10 01123 34564 44432 222333332
Q ss_pred HHhcCCCccEEEEeecChHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHH-HHHHh
Q 030234 67 LEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLE-AFHKQ 145 (181)
Q Consensus 67 l~~~~~~p~~vi~L~~~~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~~r~dd~~~~i~~Rl~-~y~~~ 145 (181)
. ..+..||++|+|++|.+++.+|+..|.... .|-+.....+.+|+. .|.+
T Consensus 119 ~-~~~~~PDl~i~Ld~~~e~~~~Ri~~r~~~~---------------------------dr~e~~~~~f~~~v~~~Y~~- 169 (205)
T 4hlc_A 119 A-INGLYPDLTIYLNVSAEVGRERIIKNSRDQ---------------------------NRLDQEDLKFHEKVIEGYQE- 169 (205)
T ss_dssp H-HTTCCCSEEEEEECCHHHHHHHHHC----------------------------------CCHHHHHHHHHHHHHHHH-
T ss_pred H-hcCCCCCEEeeeCCCHHHHHHHHHhcCCcc---------------------------cchhccCHHHHHHHHHHHHH-
Confidence 2 235789999999999999999998875211 122221222333332 2322
Q ss_pred cHHHHHHHhh-cCCEEEEeCCCChHHHHHHHHHHhc
Q 030234 146 TEPVIDYYSK-KGIVAQLHAEKPPQEVTSEVQKALS 180 (181)
Q Consensus 146 ~~~l~~~y~~-~~~l~~Ida~~~~~~v~~~i~~~l~ 180 (181)
++.. ...++.|||++++++|+++|.+.|.
T Consensus 170 ------l~~~~~~~~~~IDa~~~~e~V~~~i~~~i~ 199 (205)
T 4hlc_A 170 ------IIHNESQRFKSVNADQPLENVVEDTYQTII 199 (205)
T ss_dssp ------HHHSCCTTEEEEETTSCHHHHHHHHHHHHH
T ss_pred ------HHHhCCCCEEEEECCCCHHHHHHHHHHHHH
Confidence 2222 2469999999999999999887663
No 26
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=98.82 E-value=2.1e-07 Score=69.32 Aligned_cols=134 Identities=16% Similarity=0.178 Sum_probs=82.6
Q ss_pred cCChHHHHHHHHHHCCCCCCHHHHHHHHHHH------HcCCC-CCCCeEec----------CCCCCHHHHH--HHHHHHH
Q 030234 8 AKTPLGIKAKEAMDKGELVSDDLVVGIIDEA------MKKPS-CQKGFILD----------GFPRTEVQAQ--KLDEMLE 68 (181)
Q Consensus 8 ~~t~lg~~i~~~l~~G~~vpd~~v~~ll~~~------l~~~~-~~~G~iLd----------GfPrt~~Qa~--~l~~~l~ 68 (181)
.++++|..+++++..|...|.....-....+ +...- ....+|+| |+|++..+.. .+.. +.
T Consensus 38 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~i~~~l~~g~~vi~dr~~~s~~~~~~~~~~~~~~~~~~~~~-~~ 116 (197)
T 2z0h_A 38 GGTETGEKIRKILLEEEVTPKAELFLFLASRNLLVTEIKQYLSEGYAVLLDRYTDSSVAYQGFGRNLGKEIVEELND-FA 116 (197)
T ss_dssp CSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHTTC----CEEEEESCHHHHHHHTTTTTCSCHHHHHHHHH-HH
T ss_pred CCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEECCChhHHHHHHHhccCCCHHHHHHHHH-Hh
Confidence 4578899999999988887765433222211 32211 12345666 7788765432 2211 12
Q ss_pred hcCCCccEEEEeecChHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHHhcHH
Q 030234 69 KQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEP 148 (181)
Q Consensus 69 ~~~~~p~~vi~L~~~~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~~r~dd~~~~i~~Rl~~y~~~~~~ 148 (181)
.....||.+|+|++|.+++.+|+..|. |.++. +..++....|.+.
T Consensus 117 ~~~~~~d~vi~l~~~~e~~~~Rl~~R~-------------------------------~~~~~-~~~~~~~~~~~~~--- 161 (197)
T 2z0h_A 117 TDGLIPDLTFYIDVDVETALKRKGELN-------------------------------RFEKR-EFLERVREGYLVL--- 161 (197)
T ss_dssp HTTCCCSEEEEEECCHHHHHHHC---C-------------------------------CCCCH-HHHHHHHHHHHHH---
T ss_pred cCCCCCCEEEEEeCCHHHHHHHHhccC-------------------------------cccHH-HHHHHHHHHHHHH---
Confidence 234579999999999999999998871 22222 4444444445543
Q ss_pred HHHHHhhcCCEEEEeCCCChHHHHHHHHHHhc
Q 030234 149 VIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 180 (181)
Q Consensus 149 l~~~y~~~~~l~~Ida~~~~~~v~~~i~~~l~ 180 (181)
.+.+ ...++.||+++++++++++|.+.+.
T Consensus 162 -~~~~--~~~~~~Id~~~~~e~~~~~i~~~l~ 190 (197)
T 2z0h_A 162 -AREH--PERIVVLDGKRSIEEIHRDVVREVK 190 (197)
T ss_dssp -HHHC--TTTEEEEETTSCHHHHHHHHHHHTT
T ss_pred -HHhC--CCCEEEEeCCCCHHHHHHHHHHHHH
Confidence 2333 2368899999999999999998875
No 27
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=98.77 E-value=3.5e-08 Score=76.53 Aligned_cols=138 Identities=11% Similarity=0.159 Sum_probs=87.6
Q ss_pred cCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCC--------CCCCCeEecCCCCCH--HH----------HHHHHHHH
Q 030234 8 AKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKP--------SCQKGFILDGFPRTE--VQ----------AQKLDEML 67 (181)
Q Consensus 8 ~~t~lg~~i~~~l~~G~~vpd~~v~~ll~~~l~~~--------~~~~G~iLdGfPrt~--~Q----------a~~l~~~l 67 (181)
.+|++|+.+++++.+|.+.|.....-...+|.... .....+|.|.|+.+. -| ...+..+.
T Consensus 67 ~~t~~g~~ir~~l~~~~~~~~~~~llf~a~R~~~~~~~i~p~l~~g~~VI~DRy~~S~~ayq~~~~gl~~~~~~~l~~~~ 146 (227)
T 3v9p_A 67 GGTRLGETLREILLNQPMDLETEALLMFAGRREHLALVIEPALARGDWVVSDRFTDATFAYQGGGRGLPRDKLEALERWV 146 (227)
T ss_dssp SSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTHHHHHHTTCEEEEECCHHHHHHHHTTTTCCCHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCEEEEeccHhHHHHHhhhccCCCHHHHHHHHHHH
Confidence 47899999999999997766665444444443321 012346889876542 23 22222211
Q ss_pred HhcCCCccEEEEeecChHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHH-HHHHHhc
Q 030234 68 EKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRL-EAFHKQT 146 (181)
Q Consensus 68 ~~~~~~p~~vi~L~~~~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~~r~dd~~~~i~~Rl-~~y~~~~ 146 (181)
..+..||++|+|++|.+++.+|+..|.. . .|.+.....+.+|+ ..|...
T Consensus 147 -~~~~~PDl~I~Ldv~~e~~~~Ri~~R~~----~------------------------dr~E~~~~ef~~rv~~~Y~~l- 196 (227)
T 3v9p_A 147 -QGGFQPDLTVLFDVPPQIASARRGAVRM----P------------------------DKFESESDAFFARTRAEYLRR- 196 (227)
T ss_dssp -HTTCCCSEEEEEECCSSCGGGTTTCCCC----C---------------------------CCHHHHHHHHHHHHHHHH-
T ss_pred -hcCCCCCEEEEEeCCHHHHHHHHHhccC----c------------------------cchhhhhHHHHHHHHHHHHHH-
Confidence 2357899999999999999999988741 0 12333223333443 445432
Q ss_pred HHHHHHHhhcCCEEEEeCCCChHHHHHHHHHHhc
Q 030234 147 EPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 180 (181)
Q Consensus 147 ~~l~~~y~~~~~l~~Ida~~~~~~v~~~i~~~l~ 180 (181)
.+.|. ..++.|||++++++|+++|.+.|+
T Consensus 197 ---a~~~~--~~~~vIDa~~s~eeV~~~I~~~l~ 225 (227)
T 3v9p_A 197 ---AQEAP--HRFVIVDSSEPIAQIRKQLEGVLA 225 (227)
T ss_dssp ---HHHCT--TTEEEEETTSCHHHHHHHHHHHHH
T ss_pred ---HHHhc--CCEEEEeCCCCHHHHHHHHHHHHH
Confidence 23332 469999999999999999998875
No 28
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=98.68 E-value=9.4e-07 Score=68.82 Aligned_cols=134 Identities=22% Similarity=0.222 Sum_probs=75.4
Q ss_pred cCChHHHHHHHHHHCC---CCCCHHHHH------------HHHHHHHcCCCCCCCeEec----------CCCCCHH--HH
Q 030234 8 AKTPLGIKAKEAMDKG---ELVSDDLVV------------GIIDEAMKKPSCQKGFILD----------GFPRTEV--QA 60 (181)
Q Consensus 8 ~~t~lg~~i~~~l~~G---~~vpd~~v~------------~ll~~~l~~~~~~~G~iLd----------GfPrt~~--Qa 60 (181)
.+|++|+.+++++..+ ..+++.... +.|+..+.. ...+|.| |+++... -.
T Consensus 66 ~~t~~g~~ir~~l~~~~~~~~~~~~~e~lLf~A~R~~~~~~~I~paL~~---g~~VI~DRy~~S~~AYq~~~rgl~~~~i 142 (236)
T 3lv8_A 66 GGTLLAEKLRALVKEEHPGEELQDITELLLVYAARVQLVENVIKPALAR---GEWVVGDRHDMSSQAYQGGGRQIAPSTM 142 (236)
T ss_dssp CSSHHHHHHHHHHHSCCTTSCCCHHHHHHHHHHHHHHHHHHTHHHHHHT---TCEEEEESCHHHHHHHTTTTTCCCHHHH
T ss_pred CCCHHHHHHHHHHhhCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHc---CCEEEEeeecchHHhhhhhccCCCHHHH
Confidence 4789999999999743 345543322 112222221 2345666 4444432 22
Q ss_pred HHHHHHHHhcCCCccEEEEeecChHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHH-
Q 030234 61 QKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRL- 139 (181)
Q Consensus 61 ~~l~~~l~~~~~~p~~vi~L~~~~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~~r~dd~~~~i~~Rl- 139 (181)
..|..+. ..+..||++|+|++|.+++.+|+.+|.. . .|.+.....+.+|+
T Consensus 143 ~~l~~~~-~~~~~PDlvi~Ldv~~e~~~~Ri~~R~~----~------------------------dr~E~~~~~~~~rv~ 193 (236)
T 3lv8_A 143 QSLKQTA-LGDFKPDLTLYLDIDPKLGLERARGRGE----L------------------------DRIEKMDISFFERAR 193 (236)
T ss_dssp HHHHHHH-HTTCCCSEEEEEECCHHHHHHC-----C----C------------------------CTTTTSCHHHHHHHH
T ss_pred HHHHHHH-hcCCCCCEEEEEeCCHHHHHHHHHhcCC----c------------------------chhhhhHHHHHHHHH
Confidence 3333222 2357899999999999999999998841 0 02222112333444
Q ss_pred HHHHHhcHHHHHHHhhcCCEEEEeCCCChHHHHHHHHHHhc
Q 030234 140 EAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 180 (181)
Q Consensus 140 ~~y~~~~~~l~~~y~~~~~l~~Ida~~~~~~v~~~i~~~l~ 180 (181)
+.|.+. +.....++.|||++++++|+++|.+.|+
T Consensus 194 ~~y~~l-------a~~~~~~~vIDa~~sieeV~~~I~~~l~ 227 (236)
T 3lv8_A 194 ERYLEL-------ANSDDSVVMIDAAQSIEQVTADIRRALQ 227 (236)
T ss_dssp HHHHHH-------HHHCTTEEEEETTSCHHHHHHHHHHHHH
T ss_pred HHHHHH-------HHHCCCEEEEeCCCCHHHHHHHHHHHHH
Confidence 334332 2222239999999999999999988774
No 29
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=98.67 E-value=7.2e-08 Score=72.78 Aligned_cols=132 Identities=9% Similarity=0.106 Sum_probs=85.1
Q ss_pred CChHHHHHHHHHHCCCCCCHHHHHHHHHH-H------HcCC-CCCCCeEecCCCCCH--HHHHH--H-HHHHH---hcCC
Q 030234 9 KTPLGIKAKEAMDKGELVSDDLVVGIIDE-A------MKKP-SCQKGFILDGFPRTE--VQAQK--L-DEMLE---KQGK 72 (181)
Q Consensus 9 ~t~lg~~i~~~l~~G~~vpd~~v~~ll~~-~------l~~~-~~~~G~iLdGfPrt~--~Qa~~--l-~~~l~---~~~~ 72 (181)
+++.|..+++++.+|..+|+.....++.. + +... .....+|+|+||.+. .|... + ..++. ....
T Consensus 50 ~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~vi~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 129 (212)
T 2wwf_A 50 ETGIGQIISKYLKMENSMSNETIHLLFSANRWEHMNEIKSLLLKGIWVVCDRYAYSGVAYSSGALNLNKTWCMNPDQGLI 129 (212)
T ss_dssp TSHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHTTHHHHHHHHHHTCEEEEECCHHHHHHHHHHHSCCCHHHHHGGGTTSB
T ss_pred CCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecchhhHHHHHHhccCCCHHHHHHHhhCCC
Confidence 58899999999988888998766555431 1 1110 113579999999852 22211 0 01121 1124
Q ss_pred CccEEEEeecChHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHH-HHHhcHHHHH
Q 030234 73 KVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEA-FHKQTEPVID 151 (181)
Q Consensus 73 ~p~~vi~L~~~~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~~r~dd~~~~i~~Rl~~-y~~~~~~l~~ 151 (181)
.|+.+|+|++|.+++.+|+..|. .|.++ +.+.+|+.. |.+...
T Consensus 130 ~~d~vi~l~~~~e~~~~Rl~~r~------------------------------~r~~~--~~~~~~~~~~~~~~~~---- 173 (212)
T 2wwf_A 130 KPDVVFYLNVPPNYAQNRSDYGE------------------------------EIYEK--VETQKKIYETYKHFAH---- 173 (212)
T ss_dssp CCSEEEEEECCTTGGGGSTTTTS------------------------------STTCS--HHHHHHHHHHGGGGTT----
T ss_pred CCCEEEEEeCCHHHHHHhhccCc------------------------------ccccH--HHHHHHHHHHHHHHhc----
Confidence 68999999999999999876431 02222 345666643 333221
Q ss_pred HHhhcCCEEEEeCCCChHHHHHHHHHHhc
Q 030234 152 YYSKKGIVAQLHAEKPPQEVTSEVQKALS 180 (181)
Q Consensus 152 ~y~~~~~l~~Ida~~~~~~v~~~i~~~l~ 180 (181)
....+.||++.++++++++|.+.+.
T Consensus 174 ----~~~~~~Id~~~~~~~~~~~i~~~l~ 198 (212)
T 2wwf_A 174 ----EDYWINIDATRKIEDIHNDIVKEVT 198 (212)
T ss_dssp ----CTTEEEEECSSCHHHHHHHHHHHHT
T ss_pred ----cCCEEEEECCCCHHHHHHHHHHHHH
Confidence 2358899999999999999998875
No 30
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=98.66 E-value=3e-07 Score=67.37 Aligned_cols=108 Identities=17% Similarity=0.123 Sum_probs=63.8
Q ss_pred HHHHHHHHHHcCCCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCccEEEEeecChHHHHHHHhCCCcCCCCCCccccCCC
Q 030234 30 LVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFA 109 (181)
Q Consensus 30 ~v~~ll~~~l~~~~~~~G~iLdGfPrt~~Qa~~l~~~l~~~~~~p~~vi~L~~~~~~~~~Rl~~r~~~~~tg~~y~~~~~ 109 (181)
++.+++...+.......+||+||+|.+..|.+.|.+.....+. +..+|+|++|.+++.+|+.+|..
T Consensus 63 ~~~~~~~~~l~~~~~g~~vi~d~~~~~~~~~~~l~~~~~~~~~-~~~~i~l~~~~~~~~~R~~~R~~------------- 128 (181)
T 1ly1_A 63 MQFDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGW-KVEHKVFDVPWTELVKRNSKRGT------------- 128 (181)
T ss_dssp HHHHHHHHHHTSCSSCCEEEECSCCCSHHHHHHHHHHHHHHTC-EEEEEECCCCHHHHHHHHTTCGG-------------
T ss_pred HHHHHHHHHHhhccCCCeEEEeCCCCCHHHHHHHHHHHHHcCC-CEEEEEEeCCHHHHHHHHhcccc-------------
Confidence 4455666666432335789999999999998888765554443 45799999999999999998752
Q ss_pred CCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCCEEEEeCCCChHHHHHHHHHHh
Q 030234 110 PPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKAL 179 (181)
Q Consensus 110 pp~~~~~~~~~~~~l~~r~dd~~~~i~~Rl~~y~~~~~~l~~~y~~~~~l~~Ida~~~~~~v~~~i~~~l 179 (181)
.+...+.+.+++..|.... .+. .+.||++.+ ++|..+|...|
T Consensus 129 ------------------~~~~~~~i~~~~~~~~~~~-----~~~----~~~id~~~~-~~v~~~i~~~l 170 (181)
T 1ly1_A 129 ------------------KAVPIDVLRSMYKSMREYL-----GLP----VYNGTPGKP-KAVIFDVDGTL 170 (181)
T ss_dssp ------------------GCCCHHHHHHHHHHHHHHH-----TCC----CC-------------------
T ss_pred ------------------CCCCHHHHHHHHHHhhccC-----CCC----ccccCCCCC-ceeeehhhhhh
Confidence 1235688999999887751 121 223888875 77777776554
No 31
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=98.66 E-value=5.8e-07 Score=68.92 Aligned_cols=138 Identities=15% Similarity=0.165 Sum_probs=83.7
Q ss_pred cCChHHHHHHHHHHCCC--CCCHHHHH-HHHHHHHcCC--------CCCCCeEecCCCC----------C--HHHHHHHH
Q 030234 8 AKTPLGIKAKEAMDKGE--LVSDDLVV-GIIDEAMKKP--------SCQKGFILDGFPR----------T--EVQAQKLD 64 (181)
Q Consensus 8 ~~t~lg~~i~~~l~~G~--~vpd~~v~-~ll~~~l~~~--------~~~~G~iLdGfPr----------t--~~Qa~~l~ 64 (181)
.+|++|+.+++++.+|. .+++.... =...+|..+. ....-+|.|-|.- . .+....+.
T Consensus 44 ~~~~~g~~i~~~l~~~~~~~~~~~~~~llf~a~R~~~~~~~i~p~l~~g~~Vi~DRy~~S~~ayq~~~~g~~~~~~~~l~ 123 (213)
T 4edh_A 44 GGTPLAERIRELLLAPSDEPMAADTELLLMFAARAQHLAGVIRPALARGAVVLCDRFTDATYAYQGGGRGLPEARIAALE 123 (213)
T ss_dssp CSSHHHHHHHHHHHSCCSSCCCHHHHHHHHHHHHHHHHHHTHHHHHHTTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECccHhHHHHHhhhccCCCHHHHHHHH
Confidence 47899999999999885 34443321 1112332210 0123456675532 2 23333333
Q ss_pred HHHHhcCCCccEEEEeecChHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCCCcccCCCC-cHHHHHHHHHHHH
Q 030234 65 EMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDD-TAAVLKSRLEAFH 143 (181)
Q Consensus 65 ~~l~~~~~~p~~vi~L~~~~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~~r~dd-~~~~i~~Rl~~y~ 143 (181)
.+. ..+..||++|+|++|.+++.+|+..|.. . .|.+. ..+..++..+.|.
T Consensus 124 ~~~-~~~~~PDlvi~Ld~~~e~~~~Ri~~R~~----~------------------------dr~E~~~~~~~~rv~~~y~ 174 (213)
T 4edh_A 124 SFV-QGDLRPDLTLVFDLPVEIGLARAAARGR----L------------------------DRFEQEDRRFFEAVRQTYL 174 (213)
T ss_dssp HHH-HTTCCCSEEEEEECCHHHHHHHHCCCSS----C------------------------CTTTTSCHHHHHHHHHHHH
T ss_pred HHH-hcCCCCCEEEEEeCCHHHHHHHHHhcCC----c------------------------CcccccHHHHHHHHHHHHH
Confidence 321 2357899999999999999999998741 0 12222 2333333334554
Q ss_pred HhcHHHHHHHhhcCCEEEEeCCCChHHHHHHHHHHhc
Q 030234 144 KQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 180 (181)
Q Consensus 144 ~~~~~l~~~y~~~~~l~~Ida~~~~~~v~~~i~~~l~ 180 (181)
.. .+.|. ..++.|||++++++|+++|.+.|.
T Consensus 175 ~l----~~~~~--~~~~vIDa~~s~eeV~~~I~~~l~ 205 (213)
T 4edh_A 175 QR----AAQAP--ERYQVLDAGLPLAEVQAGLDRLLP 205 (213)
T ss_dssp HH----HHHCT--TTEEEEETTSCHHHHHHHHHHHHH
T ss_pred HH----HHHCC--CcEEEEeCCCCHHHHHHHHHHHHH
Confidence 43 23343 369999999999999999988764
No 32
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=98.63 E-value=1.1e-07 Score=71.55 Aligned_cols=109 Identities=13% Similarity=0.117 Sum_probs=66.1
Q ss_pred CCeEecCCCCCHH--H------HHHHHHHHHhcCCCccEEEEeecChHHHHHHHh-CCCcCCCCCCccccCCCCCCCCCC
Q 030234 46 KGFILDGFPRTEV--Q------AQKLDEMLEKQGKKVDKVLNFAIDDAVLEERIT-GRWIHPSSGRTYHTKFAPPKVPGV 116 (181)
Q Consensus 46 ~G~iLdGfPrt~~--Q------a~~l~~~l~~~~~~p~~vi~L~~~~~~~~~Rl~-~r~~~~~tg~~y~~~~~pp~~~~~ 116 (181)
..+|+||||.+.. | .+.+.. +..+...|+.+|+|++|.+++.+|+. .|. + +++ |+
T Consensus 87 ~~vi~D~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~vi~l~~~~e~~~~Rl~~~R~-~--~~~-~~----------- 150 (213)
T 2plr_A 87 FIVISDRYIYTAYARDSVRGVDIDWVKK-LYSFAIKPDITFYIRVSPDIALERIKKSKR-K--IKP-QE----------- 150 (213)
T ss_dssp CEEEEESCHHHHHHHHHTTTCCHHHHHH-HTTTSCCCSEEEEEECCHHHHHHHHHHTTC-C--CCT-TT-----------
T ss_pred CEEEEeCcHhHHHHHHHhhCCCHHHHHH-HHhcCCCCCEEEEEeCCHHHHHHHHhcccc-c--ccc-cc-----------
Confidence 5689999998742 2 122322 22233458999999999999999998 664 1 111 11
Q ss_pred CCCCCCCcccCCC--CcHHHHHHHHHHHHHhcHHHHHHHhhcCCEEEEeCCCChHHHHHHHHHHhc
Q 030234 117 DDVTGEPLIQRKD--DTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 180 (181)
Q Consensus 117 ~~~~~~~l~~r~d--d~~~~i~~Rl~~y~~~~~~l~~~y~~~~~l~~Ida~~~~~~v~~~i~~~l~ 180 (181)
+|..+..+.| +..+.+.+|+..+...+. +.| .++.||+++++++|+++|.+.|.
T Consensus 151 ---~g~~~~~~~d~~e~~~~~~~r~~~~~~~~~---~~~----~~~~Id~~~~~e~v~~~I~~~l~ 206 (213)
T 2plr_A 151 ---AGADIFPGLSPEEGFLKYQGLITEVYDKLV---KDE----NFIVIDGTKTPKEIQIQIRKFVG 206 (213)
T ss_dssp ---TTTTTCTTSCHHHHHHHHHHHHHHHHHHHT---TTT----TCEEEETTSCHHHHHHHHHHHHH
T ss_pred ---cccccccccchhhhHHHHHHHHHHHHHHHH---hhC----CEEEEECCCCHHHHHHHHHHHHH
Confidence 1111222222 122345556554433221 111 57899999999999999998764
No 33
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=98.55 E-value=9.9e-06 Score=62.01 Aligned_cols=137 Identities=13% Similarity=0.128 Sum_probs=80.5
Q ss_pred cCChHHHHHHHHHHCC-----CCCCHHHHHHHH-HHHHcCC--------CCCCCeEecCCCCC------------HHHHH
Q 030234 8 AKTPLGIKAKEAMDKG-----ELVSDDLVVGII-DEAMKKP--------SCQKGFILDGFPRT------------EVQAQ 61 (181)
Q Consensus 8 ~~t~lg~~i~~~l~~G-----~~vpd~~v~~ll-~~~l~~~--------~~~~G~iLdGfPrt------------~~Qa~ 61 (181)
.+|++|+.|++++..+ ..+.+....=|+ ..|-... ....-+|.|-|.-+ .+-..
T Consensus 42 ~~t~~g~~ir~~l~~~~~~~~~~~~~~~e~lL~~A~R~~~~~~~i~paL~~g~~VI~DRy~~S~~AYq~~~~g~~~~~~~ 121 (213)
T 4tmk_A 42 GGTQLAEKLRSLLLDIKSVGDEVITDKAEVLMFYAARVQLVETVIKPALANGTWVIGDRHDLSTQAYQGGGRGIDQHMLA 121 (213)
T ss_dssp CSSHHHHHHHHHHHSTTTTTTCCCCHHHHHHHHHHHHHHHHHHTHHHHHHTTCEEEEECCHHHHHHHTTTTTCCCHHHHH
T ss_pred CCCHHHHHHHHHHhcccccccccCChHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEcCcHhHHHHHcccccCCCHHHHH
Confidence 4789999999999832 345543221111 1221110 01234677765432 12222
Q ss_pred HHHHHHHhcCCCccEEEEeecChHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCCCcccCCCC-cHHHHHHHHH
Q 030234 62 KLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDD-TAAVLKSRLE 140 (181)
Q Consensus 62 ~l~~~l~~~~~~p~~vi~L~~~~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~~r~dd-~~~~i~~Rl~ 140 (181)
.++... ..+..||++|+|++|.+++.+|+..|.. . .|.+. ..+..++-.+
T Consensus 122 ~l~~~~-~~~~~PDl~i~Ldv~~e~~~~Ri~~R~~----~------------------------dr~E~~~~~f~~rv~~ 172 (213)
T 4tmk_A 122 TLRDAV-LGDFRPDLTLYLDVTPEVGLKRARARGE----L------------------------DRIEQESFDFFNRTRA 172 (213)
T ss_dssp HHHHHH-HTTCCCSEEEEEECCHHHHHHHHHHHSS----C------------------------CTTTTSCHHHHHHHHH
T ss_pred HHHHHh-ccCCCCCEEEEEeCCHHHHHHHHHhcCC----c------------------------cchhhhHHHHHHHHHH
Confidence 233221 2357899999999999999999988741 0 12222 2333333334
Q ss_pred HHHHhcHHHHHHHhhcCCEEEEeCCCChHHHHHHHHHHhc
Q 030234 141 AFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 180 (181)
Q Consensus 141 ~y~~~~~~l~~~y~~~~~l~~Ida~~~~~~v~~~i~~~l~ 180 (181)
.|.+... ....++.|||++++++|+++|.+.|.
T Consensus 173 ~y~~la~-------~~~~~~vIDa~~s~eeV~~~I~~~l~ 205 (213)
T 4tmk_A 173 RYLELAA-------QDKSIHTIDATQPLEAVMDAIRTTVT 205 (213)
T ss_dssp HHHHHHH-------TCTTEEEEETTSCHHHHHHHHHHHHH
T ss_pred HHHHHHH-------HCCcEEEECCCCCHHHHHHHHHHHHH
Confidence 4544321 12479999999999999999988764
No 34
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=98.52 E-value=9.8e-07 Score=65.20 Aligned_cols=95 Identities=12% Similarity=0.192 Sum_probs=60.3
Q ss_pred CCCeEecCCCCCHHH--------HHHHHHHHHhcCCCccEEEEeecChHHHHHH-HhC--CCcCCCCCCccccCCCCCCC
Q 030234 45 QKGFILDGFPRTEVQ--------AQKLDEMLEKQGKKVDKVLNFAIDDAVLEER-ITG--RWIHPSSGRTYHTKFAPPKV 113 (181)
Q Consensus 45 ~~G~iLdGfPrt~~Q--------a~~l~~~l~~~~~~p~~vi~L~~~~~~~~~R-l~~--r~~~~~tg~~y~~~~~pp~~ 113 (181)
..++|+||||....| ...+.. ..|+.+|+|++|.+++++| +.. |.
T Consensus 85 ~~~vi~d~~~~~~~~~~~~~~~~~~~~~~------~~~~~vi~l~~~~~~~~~rr~~~~~R~------------------ 140 (194)
T 1nks_A 85 EGYLFIDTHAVIRTPSGYLPGLPSYVITE------INPSVIFLLEADPKIILSRQKRDTTRN------------------ 140 (194)
T ss_dssp SSEEEEEECSEEEETTEEEESSCHHHHHH------HCCSEEEEEECCHHHHHHHHHHCTTTC------------------
T ss_pred CCEEEECCchhhccccccccCCCHHHHHh------cCCCEEEEEeCCHHHHHHHHHhhcccC------------------
Confidence 467999999876555 333332 2589999999999998866 665 52
Q ss_pred CCCCCCCCCCcccC-CCCcHHHH--HHHHHHHHHhcHHHHHHHhhcCCEEEE-eCCCChHHHHHHHHHHhc
Q 030234 114 PGVDDVTGEPLIQR-KDDTAAVL--KSRLEAFHKQTEPVIDYYSKKGIVAQL-HAEKPPQEVTSEVQKALS 180 (181)
Q Consensus 114 ~~~~~~~~~~l~~r-~dd~~~~i--~~Rl~~y~~~~~~l~~~y~~~~~l~~I-da~~~~~~v~~~i~~~l~ 180 (181)
| +....+.+ ..++.... ......|. ...++.| |+++++++++++|.+.|.
T Consensus 141 -------------~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~I~d~~~~~e~v~~~I~~~l~ 194 (194)
T 1nks_A 141 -------------RNDYSDESVILETINFARYA---ATASAVLA-GSTVKVIVNVEGDPSIAANEIIRSMK 194 (194)
T ss_dssp -------------CCCCCSHHHHHHHHHHHHHH---HHHHHHHH-TCEEEEEECCSSCHHHHHHHHHHHHC
T ss_pred -------------CCCccCHHHHHHHHHHHHHH---HHHHHHhc-CCcEEEEeCCCCCHHHHHHHHHHHhC
Confidence 1 11122322 22333222 22233342 2357889 999999999999998763
No 35
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=98.49 E-value=2.2e-06 Score=64.10 Aligned_cols=130 Identities=12% Similarity=0.071 Sum_probs=79.5
Q ss_pred CChHHHHHHHHHHCCCCCCHHHHHHHHH--HHHcC-----C--CCCCCeEecCCCCCHH--H------HHHHHHHHHhcC
Q 030234 9 KTPLGIKAKEAMDKGELVSDDLVVGIID--EAMKK-----P--SCQKGFILDGFPRTEV--Q------AQKLDEMLEKQG 71 (181)
Q Consensus 9 ~t~lg~~i~~~l~~G~~vpd~~v~~ll~--~~l~~-----~--~~~~G~iLdGfPrt~~--Q------a~~l~~~l~~~~ 71 (181)
++..|..+++++.++..+++... .++. .+... . .....+|+|+||++.. | ...+.. +....
T Consensus 42 ~~~~g~~i~~~~~~~~~~~~~~~-~~l~~~~r~~~~~~i~~~l~~~~~vi~Dr~~~s~~~~~~~~g~~~~~~~~-~~~~~ 119 (204)
T 2v54_A 42 STVTGKMIDDYLTRKKTYNDHIV-NLLFCANRWEFASFIQEQLEQGITLIVDRYAFSGVAYAAAKGASMTLSKS-YESGL 119 (204)
T ss_dssp TSHHHHHHHHHHTSSCCCCHHHH-HHHHHHHHHTTHHHHHHHHHTTCEEEEESCHHHHHHHHHHTTCCHHHHHH-HHTTS
T ss_pred CCcHHHHHHHHHhcCCCCCHHHH-HHHHHHHHHHHHHHHHHHHHCCCEEEEECchhhHHHHHHccCCCHHHHHH-HhcCC
Confidence 57789999999988776665533 3321 11110 0 1124689999998642 2 222322 22223
Q ss_pred CCccEEEEeecChHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHH-HHHhcHHHH
Q 030234 72 KKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEA-FHKQTEPVI 150 (181)
Q Consensus 72 ~~p~~vi~L~~~~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~~r~dd~~~~i~~Rl~~-y~~~~~~l~ 150 (181)
..||.+|+|++|.+++.+ +|..+ +.+. ..+.+|+.. |.+...
T Consensus 120 ~~~d~vi~l~~~~e~~~~---~R~~d-----------------------------~~e~--~~~~~rl~~~y~~~~~--- 162 (204)
T 2v54_A 120 PKPDLVIFLESGSKEINR---NVGEE-----------------------------IYED--VTFQQKVLQEYKKMIE--- 162 (204)
T ss_dssp BCCSEEEEECCCHHHHTT---CCSSS-----------------------------TTCC--SHHHHHHHHHHHHHHT---
T ss_pred CCCCEEEEEeCCHHHHHh---hcCcc-----------------------------cccH--HHHHHHHHHHHHHHHH---
Confidence 479999999999998876 34210 1111 245666654 544321
Q ss_pred HHHhhcCCEEEEeCCCChHHHHHHHHHHhc
Q 030234 151 DYYSKKGIVAQLHAEKPPQEVTSEVQKALS 180 (181)
Q Consensus 151 ~~y~~~~~l~~Ida~~~~~~v~~~i~~~l~ 180 (181)
.| ...++.||++.++++++++|.+.|.
T Consensus 163 -~~--~~~~~~Id~~~~~~~v~~~i~~~l~ 189 (204)
T 2v54_A 163 -EG--DIHWQIISSEFEEDVKKELIKNIVI 189 (204)
T ss_dssp -TC--SSCEEEECTTSCHHHHHHHHHHHHH
T ss_pred -hC--CCcEEEEECCCCHHHHHHHHHHHHH
Confidence 12 2368899999999999999988764
No 36
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=98.32 E-value=4.4e-06 Score=61.60 Aligned_cols=101 Identities=13% Similarity=0.107 Sum_probs=58.7
Q ss_pred CCCeEecCCCCCHHHHHHH----HHHHHhcCCCccEEEEeecChHHHHH-HHhC--CCcCCCCCCccccCCCCCCCCCCC
Q 030234 45 QKGFILDGFPRTEVQAQKL----DEMLEKQGKKVDKVLNFAIDDAVLEE-RITG--RWIHPSSGRTYHTKFAPPKVPGVD 117 (181)
Q Consensus 45 ~~G~iLdGfPrt~~Qa~~l----~~~l~~~~~~p~~vi~L~~~~~~~~~-Rl~~--r~~~~~tg~~y~~~~~pp~~~~~~ 117 (181)
..+||+||++....++..+ ...+.. ..|+++|+|++|.+++.+ |+.. |.
T Consensus 84 ~~~viid~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~l~~~~~~~~~rRl~~~~R~---------------------- 139 (192)
T 1kht_A 84 ESPVAVDTHSTVSTPKGYLPGLPSWVLNE--LNPDLIIVVETTGDEILMRRMSDETRV---------------------- 139 (192)
T ss_dssp TSCEEEECCSEEEETTEEEESSCHHHHHH--HCCSEEEEEECCHHHHHHHHHTSSSCS----------------------
T ss_pred CCeEEEccceeccccccccccCcHHHHhc--cCCCEEEEEeCCHHHHHHHHhhhcccC----------------------
Confidence 3589999997632222100 001111 148899999999999996 8876 42
Q ss_pred CCCCCCcccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCCEEEE-eCCCChHHHHHHHHHHhc
Q 030234 118 DVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQL-HAEKPPQEVTSEVQKALS 180 (181)
Q Consensus 118 ~~~~~~l~~r~dd~~~~i~~Rl~~y~~~~~~l~~~y~~~~~l~~I-da~~~~~~v~~~i~~~l~ 180 (181)
|+..+.+.+..+...+..... ....|.. ..++.| |++.+++++++.|.+.|.
T Consensus 140 ---------r~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~i~~~~~~~e~~~~~i~~~i~ 192 (192)
T 1kht_A 140 ---------RDLDTASTIEQHQFMNRCAAM-SYGVLTG-ATVKIVQNRNGLLDQAVEELTNVLR 192 (192)
T ss_dssp ---------SSCCCHHHHHHHHHHHHHHHH-HHHHHHC-CEEEEEECCTTCHHHHHHHHHHHHC
T ss_pred ---------CCcCCHHHHHHHHHHHHHHHH-HHHHhcC-CcEEEEeCCCCCHHHHHHHHHHHhC
Confidence 223344445444443333222 2233322 234555 666779999999998763
No 37
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=98.32 E-value=6.3e-07 Score=70.34 Aligned_cols=104 Identities=13% Similarity=0.063 Sum_probs=63.6
Q ss_pred cCCCCCHHH----HHHHHHHHHh--cCCCccEEEEeecChHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCCCc
Q 030234 51 DGFPRTEVQ----AQKLDEMLEK--QGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPL 124 (181)
Q Consensus 51 dGfPrt~~Q----a~~l~~~l~~--~~~~p~~vi~L~~~~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l 124 (181)
+|++++..| .+.+..+... .+..||++|+|++|.+++.+|+.+|.. .++
T Consensus 146 ~~~~~~~~e~~~~~~~~~~l~~~~~~~~~pd~vi~L~~~~e~~~~Ri~~R~r------~~~------------------- 200 (263)
T 1p5z_B 146 ESECMNETEWTIYQDWHDWMNNQFGQSLELDGIIYLQATPETCLHRIYLRGR------NEE------------------- 200 (263)
T ss_dssp HTTSSCHHHHHHHHHHHHHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHCC------GGG-------------------
T ss_pred HcCCCCHHHHHHHHHHHHHHHHhhhccCCCCeEEEEECCHHHHHHHHHhcCC------ccc-------------------
Confidence 378888766 3333322111 124799999999999999999987631 110
Q ss_pred ccCCCCcHHHHHHHHHHHHHh--cHHHHHHHhhcCCEEEEeCCCChHHHHHHHHHHhc
Q 030234 125 IQRKDDTAAVLKSRLEAFHKQ--TEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 180 (181)
Q Consensus 125 ~~r~dd~~~~i~~Rl~~y~~~--~~~l~~~y~~~~~l~~Ida~~~~~~v~~~i~~~l~ 180 (181)
..+.++..+.+..+++.|.+. +.+...+|.. ..++.|||++++++|+++|.+.|.
T Consensus 201 ~~~~~~~~~~l~~~~~~~~~~~~v~~~y~~~~~-~~~~~Id~~~~~eev~~~I~~~l~ 257 (263)
T 1p5z_B 201 QGIPLEYLEKLHYKHESWLLHRTLKTNFDYLQE-VPILTLDVNEDFKDKYESLVEKVK 257 (263)
T ss_dssp TTCCHHHHHHHHHHHHHHHTTCCCCCSCGGGGG-SCEEEEECCSCHHHHHHHHHHHHH
T ss_pred cCccHHHHHHHHHHHHHHHhhccchhhhhhhcc-CCEEEEECCCCHHHHHHHHHHHHH
Confidence 001122234455555555432 2222222333 469999999999999999998774
No 38
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=98.26 E-value=7.2e-06 Score=63.28 Aligned_cols=132 Identities=11% Similarity=0.022 Sum_probs=66.6
Q ss_pred cCChHHHHHHHHHHCCCCCCHHHHHHH-HHHHHcCC--------CCCCCeEecCCCCC-H-----------HHHHHHHHH
Q 030234 8 AKTPLGIKAKEAMDKGELVSDDLVVGI-IDEAMKKP--------SCQKGFILDGFPRT-E-----------VQAQKLDEM 66 (181)
Q Consensus 8 ~~t~lg~~i~~~l~~G~~vpd~~v~~l-l~~~l~~~--------~~~~G~iLdGfPrt-~-----------~Qa~~l~~~ 66 (181)
.+|++|..+++++.....++.....=+ ..+|.... .....+|.|-|.-+ . +-...+..+
T Consensus 61 ~~t~~g~~ir~~l~~~~~~~~~~e~llf~a~R~~~~~~~I~paL~~g~~VI~DRy~~S~~Ayq~~~~g~~~~~~~~l~~~ 140 (223)
T 3ld9_A 61 GGTLLNESVRNLLFKAQGLDSLSELLFFIAMRREHFVKIIKPSLMQKKIVICDRFIDSTIAYQGYGQGIDCSLIDQLNDL 140 (223)
T ss_dssp CSSHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHTHHHHHHTTCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHH
T ss_pred CCChHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEccchhhHHHhccccCCccHHHHHHHHHH
Confidence 368999999999985333554433211 12222211 01234566877642 1 122223222
Q ss_pred HHhcCCCccEEEEeecChHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHH-HHHHh
Q 030234 67 LEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLE-AFHKQ 145 (181)
Q Consensus 67 l~~~~~~p~~vi~L~~~~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~~r~dd~~~~i~~Rl~-~y~~~ 145 (181)
... ..||++|+|++|.+++.+|+ +|. |-+.....+.+|+. .|.+
T Consensus 141 ~~~--~~PDl~I~Ldv~~e~~~~Ri-~rd-------------------------------r~E~~~~e~~~rv~~~y~~- 185 (223)
T 3ld9_A 141 VID--VYPDITFIIDVDINESLSRS-CKN-------------------------------GYEFADMEFYYRVRDGFYD- 185 (223)
T ss_dssp HCS--SCCSEEEEEECC------------------------------------------------CHHHHHHHHHHHHH-
T ss_pred hhc--CCCCeEEEEeCCHHHHHHHh-ccC-------------------------------ccccchHHHHHHHHHHHHH-
Confidence 211 68999999999999999998 321 21111123344443 3433
Q ss_pred cHHHHHHHhhcCCEEEEeCCCChHHHHHHHHHHhc
Q 030234 146 TEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 180 (181)
Q Consensus 146 ~~~l~~~y~~~~~l~~Ida~~~~~~v~~~i~~~l~ 180 (181)
+.+.|. ..++.|||++++++| ++|.+.|.
T Consensus 186 ---la~~~~--~~~~vIDa~~sieeV-~~I~~~l~ 214 (223)
T 3ld9_A 186 ---IAKKNP--HRCHVITDKSETYDI-DDINFVHL 214 (223)
T ss_dssp ---HHHHCT--TTEEEEESSCSSSCC-CHHHHHHH
T ss_pred ---HHHHCC--CCEEEEcCCCCHHHH-HHHHHHHH
Confidence 222332 369999999999999 99888764
No 39
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.24 E-value=1.1e-06 Score=67.71 Aligned_cols=78 Identities=21% Similarity=0.216 Sum_probs=42.3
Q ss_pred cCCCccEEEEeecChHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCCCcccCCCCc--HHHHHHHHHHHHHhcH
Q 030234 70 QGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDT--AAVLKSRLEAFHKQTE 147 (181)
Q Consensus 70 ~~~~p~~vi~L~~~~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~~r~dd~--~~~i~~Rl~~y~~~~~ 147 (181)
.+..||++|+|++|.+++++|+..|. |.++. ...+.+|+..+...+.
T Consensus 143 ~~~~pD~vi~Ld~~~e~~~~Ri~~R~-------------------------------r~~e~~~~~~~~~rv~~~~~~~~ 191 (230)
T 2vp4_A 143 IHVQADLIIYLRTSPEVAYERIRQRA-------------------------------RSEESCVPLKYLQELHELHEDWL 191 (230)
T ss_dssp BCCCCSEEEEEECCHHHHHHHHHHHC-------------------------------CGGGTTCCHHHHHHHHHHHHHHH
T ss_pred hcCCCCEEEEEeCCHHHHHHHHHHcC-------------------------------CcccccCcHHHHHHHHHHHHHHH
Confidence 46789999999999999999998652 11111 1245666665554432
Q ss_pred HHHHHH-hhcCCEEEEeCCCChHHHHHHHHHHhc
Q 030234 148 PVIDYY-SKKGIVAQLHAEKPPQEVTSEVQKALS 180 (181)
Q Consensus 148 ~l~~~y-~~~~~l~~Ida~~~~~~v~~~i~~~l~ 180 (181)
..|| .....++.|||++++++|+++|.+.++
T Consensus 192 --~~~~~~~~~~~~vId~~~~~eev~~~I~~~l~ 223 (230)
T 2vp4_A 192 --IHQRRPQSCKVLVLDADLNLENIGTEYQRSES 223 (230)
T ss_dssp --TSCCSSCCCEEEEEECCC--------------
T ss_pred --HHhcccCCCCEEEEECCCCHHHHHHHHHHHHH
Confidence 1222 334568999999999999999988764
No 40
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=98.22 E-value=8.6e-06 Score=61.23 Aligned_cols=130 Identities=18% Similarity=0.125 Sum_probs=74.7
Q ss_pred CChHHHHHHHHHHCCCCCCHHHHHHH-----------HHHHHcCCCCCCCeEecCC-----CCCHHH----HHHHHHHHH
Q 030234 9 KTPLGIKAKEAMDKGELVSDDLVVGI-----------IDEAMKKPSCQKGFILDGF-----PRTEVQ----AQKLDEMLE 68 (181)
Q Consensus 9 ~t~lg~~i~~~l~~G~~vpd~~v~~l-----------l~~~l~~~~~~~G~iLdGf-----Prt~~Q----a~~l~~~l~ 68 (181)
+++.|..++.++..|..+++.....+ +...+. ....+|+|.| |++..+ .+.+.. +.
T Consensus 49 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~~i~~~l~---~~~~vi~dr~~~s~~~~~~~~~~~~~~~~~~-l~ 124 (215)
T 1nn5_A 49 STEIGKLLSSYLQKKSDVEDHSVHLLFSANRWEQVPLIKEKLS---QGVTLVVDRYAFSGVAFTGAKENFSLDWCKQ-PD 124 (215)
T ss_dssp TSHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHTTHHHHHHHHH---TTCEEEEESCHHHHHHHHHTSTTCCHHHHHG-GG
T ss_pred CCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHH---CCCEEEEeCCcccHHHHHhhcCCCCHHHHHH-HH
Confidence 47889999999988878888654322 222222 1246888944 332211 222221 11
Q ss_pred hcCCCccEEEEeecChHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHH-HHHHhcH
Q 030234 69 KQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLE-AFHKQTE 147 (181)
Q Consensus 69 ~~~~~p~~vi~L~~~~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~~r~dd~~~~i~~Rl~-~y~~~~~ 147 (181)
.....|+.+|+|++|.+++.+|+. |+.+ |.++ ..+..|+. .|.+...
T Consensus 125 ~~~~~~d~vi~l~~~~e~~~~Rl~-r~~~-----------------------------~~~~--~~~~~~~~~~~~~~~~ 172 (215)
T 1nn5_A 125 VGLPKPDLVLFLQLQLADAAKRGA-FGHE-----------------------------RYEN--GAFQERALRCFHQLMK 172 (215)
T ss_dssp TTSBCCSEEEEEECCHHHHHHC------C-----------------------------TTCS--HHHHHHHHHHHHHHTT
T ss_pred hCCCCCCEEEEEeCCHHHHHHHhc-cCcc-----------------------------ccch--HHHHHHHHHHHHHHHH
Confidence 112468999999999999999985 3311 1111 22333332 2332211
Q ss_pred HHHHHHhhcCCEEEEeCCCChHHHHHHHHHHhc
Q 030234 148 PVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 180 (181)
Q Consensus 148 ~l~~~y~~~~~l~~Ida~~~~~~v~~~i~~~l~ 180 (181)
.+ ...++.||++.++++++++|.+.+.
T Consensus 173 ----~~--~~~~~~Id~~~~~e~~~~~i~~~l~ 199 (215)
T 1nn5_A 173 ----DT--TLNWKMVDASKSIEAVHEDIRVLSE 199 (215)
T ss_dssp ----CT--TSCEEEEETTSCHHHHHHHHHHHHH
T ss_pred ----hC--CCCEEEEECCCCHHHHHHHHHHHHH
Confidence 11 2357899999999999999988764
No 41
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=98.21 E-value=9e-05 Score=55.80 Aligned_cols=133 Identities=15% Similarity=0.209 Sum_probs=77.9
Q ss_pred cCChHHHHHHHHHHCCCCCCHHHHHHHHHHH------HcCC-CCCCCeEecCCCCCH-H-H----------HHHHHHHHH
Q 030234 8 AKTPLGIKAKEAMDKGELVSDDLVVGIIDEA------MKKP-SCQKGFILDGFPRTE-V-Q----------AQKLDEMLE 68 (181)
Q Consensus 8 ~~t~lg~~i~~~l~~G~~vpd~~v~~ll~~~------l~~~-~~~~G~iLdGfPrt~-~-Q----------a~~l~~~l~ 68 (181)
.+|+.|..+++++..+..-|.....-....+ +... ....-+|.|.|--+. . | ...|... .
T Consensus 38 ~~t~~~~~ir~~l~~~~~~~~~~~ll~~a~r~~~~~~I~~~L~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~i~~l~~~-~ 116 (197)
T 3hjn_A 38 GGTETGEKIRKILLEEEVTPKAELFLFLASRNLLVTEIKQYLSEGYAVLLDRYTDSSVAYQGFGRNLGKEIVEELNDF-A 116 (197)
T ss_dssp CSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEESCHHHHHHHHTTTTCSCHHHHHHHHHH-H
T ss_pred CCCcHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHHCCCeEEecccchHHHHHHHhccCCCHHHHHHHHhh-h
Confidence 3689999999999887766655433222222 1100 111335678775422 1 2 1222221 2
Q ss_pred hcCCCccEEEEeecChHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHH-HHHHHhcH
Q 030234 69 KQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRL-EAFHKQTE 147 (181)
Q Consensus 69 ~~~~~p~~vi~L~~~~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~~r~dd~~~~i~~Rl-~~y~~~~~ 147 (181)
..+..||++|+|++|.+++.+|...|- |-++ .+ +.+|+ +.|.+
T Consensus 117 ~~~~~PDl~i~Ld~~~e~~~~R~~~~d-------------------------------r~e~-~e-f~~rv~~~y~~--- 160 (197)
T 3hjn_A 117 TDGLIPDLTFYIDVDVETALKRKGELN-------------------------------RFEK-RE-FLERVREGYLV--- 160 (197)
T ss_dssp HTTCCCSEEEEEECCHHHHHHHC---C-------------------------------TTCC-HH-HHHHHHHHHHH---
T ss_pred hcCCCCCceeecCcChHHHHHhCcCcC-------------------------------cccc-HH-HHHHHHHHHHH---
Confidence 345789999999999999999854321 2222 22 33333 33432
Q ss_pred HHHHHHhhcCCEEEEeCCCChHHHHHHHHHHhc
Q 030234 148 PVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 180 (181)
Q Consensus 148 ~l~~~y~~~~~l~~Ida~~~~~~v~~~i~~~l~ 180 (181)
+.+.+ ...++.|||++++++|.++|.+.|+
T Consensus 161 -la~~~--~~~~~~IDa~~~~eeV~~~I~~~i~ 190 (197)
T 3hjn_A 161 -LAREH--PERIVVLDGKRSIEEIHRDVVREVK 190 (197)
T ss_dssp -HHHHC--TTTEEEEETTSCHHHHHHHHHHHHS
T ss_pred -HHHhC--CCCEEEEcCCCCHHHHHHHHHHHHH
Confidence 22222 2368999999999999999998875
No 42
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=98.21 E-value=1.5e-05 Score=59.22 Aligned_cols=77 Identities=13% Similarity=-0.024 Sum_probs=52.6
Q ss_pred CCccEEEEeecChHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHHhcHHHHH
Q 030234 72 KKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVID 151 (181)
Q Consensus 72 ~~p~~vi~L~~~~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~~r~dd~~~~i~~Rl~~y~~~~~~l~~ 151 (181)
..|+.+|+|++|.+++.+|+..|. +. +... ++ ..+.+++..+... +.+
T Consensus 123 ~~~d~vi~L~~~~e~~~~Rl~~R~------r~--------------------~~~~--~~-~~~~~~l~~~~~~---~~~ 170 (205)
T 2jaq_A 123 LSFDIVIYLRVSTKTAISRIKKRG------RS--------------------EELL--IG-EEYWETLNKNYEE---FYK 170 (205)
T ss_dssp CCCSEEEEEECCHHHHHHHHHHHT------CH--------------------HHHH--SC-HHHHHHHHHHHHH---HHH
T ss_pred CCCCEEEEEeCCHHHHHHHHHHcC------Ch--------------------hhhc--Cc-HHHHHHHHHHHHH---HHH
Confidence 468999999999999999998652 10 1111 01 1344555544432 445
Q ss_pred HHhhcCCEEEEeCCCChHHHHHHHHHHhc
Q 030234 152 YYSKKGIVAQLHAEKPPQEVTSEVQKALS 180 (181)
Q Consensus 152 ~y~~~~~l~~Ida~~~~~~v~~~i~~~l~ 180 (181)
+|......+.||++.++++++++|.+.|.
T Consensus 171 ~~~~~~~~~~Id~~~~~~~v~~~I~~~l~ 199 (205)
T 2jaq_A 171 QNVYDFPFFVVDAELDVKTQIELIMNKLN 199 (205)
T ss_dssp HHTTTSCEEEEETTSCHHHHHHHHHHHHH
T ss_pred HccccCcEEEEECCCCHHHHHHHHHHHHH
Confidence 66433468999999999999999988764
No 43
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=98.10 E-value=5.6e-05 Score=56.53 Aligned_cols=114 Identities=18% Similarity=0.191 Sum_probs=74.3
Q ss_pred HCCCCCCHHHHHHH---HHHHHcCCCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCccEEEEeecChHHHHHHHhCCCcC
Q 030234 21 DKGELVSDDLVVGI---IDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIH 97 (181)
Q Consensus 21 ~~G~~vpd~~v~~l---l~~~l~~~~~~~G~iLdGfPrt~~Qa~~l~~~l~~~~~~p~~vi~L~~~~~~~~~Rl~~r~~~ 97 (181)
..|....+...... +...+ ....++|+|+.+.+..+...+... ...|..+|+|++|.+++.+|+.+|..+
T Consensus 62 ~~g~~~~~~~~~~~~~~l~~~~---~~~~~vivd~~~~~~~~~~~l~~~----~~~~~~vi~l~~~~e~~~~Rl~~R~~~ 134 (202)
T 3t61_A 62 SEGIPLTDDDRWPWLAAIGERL---ASREPVVVSCSALKRSYRDKLRES----APGGLAFVFLHGSESVLAERMHHRTGH 134 (202)
T ss_dssp HHTCCCCHHHHHHHHHHHHHHH---TSSSCCEEECCCCSHHHHHHHHHT----STTCCEEEEEECCHHHHHHHHHHHHSS
T ss_pred hcCCCCCchhhHHHHHHHHHHH---hcCCCEEEECCCCCHHHHHHHHHh----cCCCeEEEEEeCCHHHHHHHHHHhhcc
Confidence 34555555433332 22333 234689999999888887766532 235679999999999999999987521
Q ss_pred CCCCCccccCCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCCEEEEeCCCChHHHHHHHHH
Q 030234 98 PSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQK 177 (181)
Q Consensus 98 ~~tg~~y~~~~~pp~~~~~~~~~~~~l~~r~dd~~~~i~~Rl~~y~~~~~~l~~~y~~~~~l~~Ida~~~~~~v~~~i~~ 177 (181)
. ...+.+.+.+..+.. + |. ....+.||++.+++++.++|.+
T Consensus 135 ------------------------------~-~~~~~~~~~~~~~~~----~---~~-~~~~~~Id~~~~~~e~~~~I~~ 175 (202)
T 3t61_A 135 ------------------------------F-MPSSLLQTQLETLED----P---RG-EVRTVAVDVAQPLAEIVREALA 175 (202)
T ss_dssp ------------------------------C-CCHHHHHHHHHHCCC----C---TT-STTEEEEESSSCHHHHHHHHHH
T ss_pred ------------------------------C-CCHHHHHHHHHhcCC----C---CC-CCCeEEEeCCCCHHHHHHHHHH
Confidence 0 113444444443321 1 21 2247889999999999999998
Q ss_pred Hhc
Q 030234 178 ALS 180 (181)
Q Consensus 178 ~l~ 180 (181)
.|.
T Consensus 176 ~l~ 178 (202)
T 3t61_A 176 GLA 178 (202)
T ss_dssp HHH
T ss_pred HHH
Confidence 774
No 44
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=98.02 E-value=2.3e-05 Score=60.17 Aligned_cols=137 Identities=18% Similarity=0.133 Sum_probs=81.2
Q ss_pred cCChHHHHHHHHHHCCC-CCCHHHHHHHH--HHHHcCC-------CCCCCeEecCCCCC-HH-HHH------HHHHHHH-
Q 030234 8 AKTPLGIKAKEAMDKGE-LVSDDLVVGII--DEAMKKP-------SCQKGFILDGFPRT-EV-QAQ------KLDEMLE- 68 (181)
Q Consensus 8 ~~t~lg~~i~~~l~~G~-~vpd~~v~~ll--~~~l~~~-------~~~~G~iLdGfPrt-~~-Qa~------~l~~~l~- 68 (181)
.+|++|+.|++++..+. .+.+.. ..++ ..|.... .....+|.|-|.-+ .. |.- .++ .+.
T Consensus 41 ~~t~~g~~ir~~l~~~~~~~~~~~-~~llf~a~R~~~~~~I~paL~~g~~VI~DRy~~S~~ayq~~~~l~~~~~~-~l~~ 118 (216)
T 3tmk_A 41 RSTRIGGLINEYLTDDSFQLSDQA-IHLLFSANRWEIVDKIKKDLLEGKNIVMDRYVYSGVAYSAAKGTNGMDLD-WCLQ 118 (216)
T ss_dssp TTSHHHHHHHHHHHCTTSCCCHHH-HHHHHHHHHHTTHHHHHHHHHTTCEEEEESCHHHHHHHHHTTCCTTCCHH-HHHG
T ss_pred CCChHHHHHHHHHHhcccCCCHHH-HHHHHHHHHHHHHHHHHHHHHcCCEEEEeccHhHHHHHHHhcCCCHHHHH-HHHH
Confidence 47999999999998765 343332 2222 2333211 01234677888654 21 320 111 222
Q ss_pred --hcCCCccEEEEe-ecChHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHH-HHH
Q 030234 69 --KQGKKVDKVLNF-AIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEA-FHK 144 (181)
Q Consensus 69 --~~~~~p~~vi~L-~~~~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~~r~dd~~~~i~~Rl~~-y~~ 144 (181)
.....||++|+| ++|.+++.+|+..|. .|-+ + ..+.+|+.. |.+
T Consensus 119 ~~~~~~~PDlti~L~dv~pe~~~~R~~~~~------------------------------dr~E-~-~~f~~rvr~~Y~~ 166 (216)
T 3tmk_A 119 PDVGLLKPDLTLFLSTQDVDNNAEKSGFGD------------------------------ERYE-T-VKFQEKVKQTFMK 166 (216)
T ss_dssp GGTTSBCCSEEEEEECSCCSCGGGCCSSSC------------------------------CTTC-C-HHHHHHHHHHHHH
T ss_pred HhhCCCCCCEEEEEeCCCHHHHHHHhccCc------------------------------cccc-H-HHHHHHHHHHHHH
Confidence 234679999999 999999888754221 0222 2 345555554 444
Q ss_pred hcHHHHHHHhhcCCEEEEe-CCCChHHHHHHHHHHhc
Q 030234 145 QTEPVIDYYSKKGIVAQLH-AEKPPQEVTSEVQKALS 180 (181)
Q Consensus 145 ~~~~l~~~y~~~~~l~~Id-a~~~~~~v~~~i~~~l~ 180 (181)
.......++ ...++.|| |++++++|.++|.+.|.
T Consensus 167 la~~~~~~~--~~~~~vID~a~~s~eeV~~~I~~~i~ 201 (216)
T 3tmk_A 167 LLDKEIRKG--DESITIVDVTNKGIQEVEALIWQIVE 201 (216)
T ss_dssp HHHHHHHTT--CCSEEEEECTTCCHHHHHHHHHHHHH
T ss_pred HHHhccccC--CCCEEEEeCCCCCHHHHHHHHHHHHH
Confidence 443322222 34799999 99999999999988764
No 45
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=98.01 E-value=4.1e-05 Score=60.72 Aligned_cols=109 Identities=12% Similarity=0.058 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHcCCCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCccEEEEeecChHHHHHHHhCCCcCCCCCCccccCC
Q 030234 29 DLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKF 108 (181)
Q Consensus 29 ~~v~~ll~~~l~~~~~~~G~iLdGfPrt~~Qa~~l~~~l~~~~~~p~~vi~L~~~~~~~~~Rl~~r~~~~~tg~~y~~~~ 108 (181)
+++.+++...+.......++|+||++.+..+.+.|.+.....+ .+..+|+|++|.+++.+|+..|..+
T Consensus 62 ~~~~~~~~~~l~~~~~g~~vi~d~~~~~~~~~~~l~~~~~~~~-~~~~~i~l~~~~e~~~~R~~~R~~~----------- 129 (301)
T 1ltq_A 62 GMQFDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYG-WKVEHKVFDVPWTELVKRNSKRGTK----------- 129 (301)
T ss_dssp HHHHHHHHHHTTSCTTCCEEEECSCCCCHHHHHHHHHHHHHTT-CEEEEEECCCCHHHHHHHHHHCGGG-----------
T ss_pred HHHHHHHHHHHhhccCCCEEEEeCCCCCHHHHHHHHHHHHHcC-CcEEEEEEECCHHHHHHHHHhccCC-----------
Confidence 3444555555533233478999999999999888876554444 3458999999999999999988521
Q ss_pred CCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHHhcHHHHHH-Hhh-cCCEEEEeCCCChHH
Q 030234 109 APPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDY-YSK-KGIVAQLHAEKPPQE 170 (181)
Q Consensus 109 ~pp~~~~~~~~~~~~l~~r~dd~~~~i~~Rl~~y~~~~~~l~~~-y~~-~~~l~~Ida~~~~~~ 170 (181)
+..++.+++++..|+...... .| +.. ....+.+|.++++++
T Consensus 130 --------------------~~~~e~i~~~~~~~~~~~~~~-~~~~~~~~~~~i~iD~dgtl~~ 172 (301)
T 1ltq_A 130 --------------------AVPIDVLRSMYKSMREYLGLP-VYNGTPGKPKAVIFDVDGTLAK 172 (301)
T ss_dssp --------------------CCCHHHHHHHHHHHHHHHTCC-CCCCCTTSCEEEEEETBTTTBC
T ss_pred --------------------CCCHHHHHHHHHHHhcccCCc-ceeccccccceEEEeCCCCccc
Confidence 234688999998887653221 01 111 113555676666443
No 46
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.97 E-value=4.9e-05 Score=54.89 Aligned_cols=72 Identities=17% Similarity=0.166 Sum_probs=49.9
Q ss_pred CCccEEEEeecChHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHHhcHHHHH
Q 030234 72 KKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVID 151 (181)
Q Consensus 72 ~~p~~vi~L~~~~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~~r~dd~~~~i~~Rl~~y~~~~~~l~~ 151 (181)
..|+.+|+|++|.+++.+|+.+|. |+....+.+++....|.+ ...
T Consensus 93 ~~~~~~i~l~~~~e~~~~R~~~r~-------------------------------r~~~~~~~~~~~~~~~~~----~~~ 137 (173)
T 3kb2_A 93 KAKAKVVYLHADPSVIKKRLRVRG-------------------------------DEYIEGKDIDSILELYRE----VMS 137 (173)
T ss_dssp TTTEEEEEEECCHHHHHHHHHHHS-------------------------------CSCCCHHHHHHHHHHHHH----HHH
T ss_pred CCCCEEEEEeCCHHHHHHHHHhcC-------------------------------CcchhhhHHHHHHHHHHH----HHh
Confidence 578999999999999999998763 111122333333333433 334
Q ss_pred HHhhcCCEEEEeCC-CChHHHHHHHHHHhc
Q 030234 152 YYSKKGIVAQLHAE-KPPQEVTSEVQKALS 180 (181)
Q Consensus 152 ~y~~~~~l~~Ida~-~~~~~v~~~i~~~l~ 180 (181)
.|. ...+.||++ .++++++++|.+.++
T Consensus 138 ~~~--~~~~~id~~~~~~~ev~~~I~~~~~ 165 (173)
T 3kb2_A 138 NAG--LHTYSWDTGQWSSDEIAKDIIFLVE 165 (173)
T ss_dssp TCS--SCEEEEETTTSCHHHHHHHHHHHHH
T ss_pred hcC--CCEEEEECCCCCHHHHHHHHHHHHh
Confidence 443 357899999 599999999998764
No 47
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.95 E-value=7e-05 Score=56.00 Aligned_cols=96 Identities=13% Similarity=0.192 Sum_probs=67.4
Q ss_pred CCCeEec---CCCCCHHHHHHHHHHHHhcCCCccEEEEeecChHHHHHHHh-CCCcCCCCCCccccCCCCCCCCCCCCCC
Q 030234 45 QKGFILD---GFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERIT-GRWIHPSSGRTYHTKFAPPKVPGVDDVT 120 (181)
Q Consensus 45 ~~G~iLd---GfPrt~~Qa~~l~~~l~~~~~~p~~vi~L~~~~~~~~~Rl~-~r~~~~~tg~~y~~~~~pp~~~~~~~~~ 120 (181)
..++|++ |.|........+. .++.+|+|++|.+++.+|+. +|+..|.
T Consensus 94 ~~~~vi~~ggg~~~~~~~~~~l~--------~~~~vi~L~~~~e~l~~Rl~~~~~~Rp~--------------------- 144 (199)
T 3vaa_A 94 FENVVISTGGGAPCFYDNMEFMN--------RTGKTVFLNVHPDVLFRRLRIAKQQRPI--------------------- 144 (199)
T ss_dssp CSSEEEECCTTGGGSTTHHHHHH--------HHSEEEEEECCHHHHHHHHHHTGGGCGG---------------------
T ss_pred cCCcEEECCCcEEccHHHHHHHH--------cCCEEEEEECCHHHHHHHHhcCCCCCCC---------------------
Confidence 4688998 7787777766553 26789999999999999998 5532111
Q ss_pred CCCcccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCCEEEEeCCC-ChHHHHHHHHHHhc
Q 030234 121 GEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEK-PPQEVTSEVQKALS 180 (181)
Q Consensus 121 ~~~l~~r~dd~~~~i~~Rl~~y~~~~~~l~~~y~~~~~l~~Ida~~-~~~~v~~~i~~~l~ 180 (181)
..+++.+.+..++..+.+...+ +|.. .-+.||++. +++++.++|.+.|.
T Consensus 145 ------~~~~~~~~~~~~i~~~~~~r~~---~y~~--ad~~Idt~~~s~ee~~~~I~~~l~ 194 (199)
T 3vaa_A 145 ------LQGKEDDELMDFIIQALEKRAP---FYTQ--AQYIFNADELEDRWQIESSVQRLQ 194 (199)
T ss_dssp ------GTTCCHHHHHHHHHHHHHHHHH---HHTT--SSEEEECCCCSSHHHHHHHHHHHH
T ss_pred ------cCCCChhhHHHHHHHHHHHHHH---HHhh--CCEEEECCCCCHHHHHHHHHHHHH
Confidence 1234556666666665554443 5654 346788887 99999999988764
No 48
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.90 E-value=0.00014 Score=56.93 Aligned_cols=98 Identities=19% Similarity=0.129 Sum_probs=66.8
Q ss_pred CCeEecCCCCCHHHHHHHHHHHHhcCCCccEEEEeecChHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCCCcc
Q 030234 46 KGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLI 125 (181)
Q Consensus 46 ~G~iLdGfPrt~~Qa~~l~~~l~~~~~~p~~vi~L~~~~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~ 125 (181)
.++|+||.+....+...|...... ...|+.+|+|++|.+++.+|+..|..
T Consensus 73 ~~vIiD~~~~~~~~~~~l~~~a~~-~~~~~~vi~l~~~~e~~~~R~~~R~~----------------------------- 122 (260)
T 3a4m_A 73 YWVIVDDTNYYNSMRRDLINIAKK-YNKNYAIIYLKASLDVLIRRNIERGE----------------------------- 122 (260)
T ss_dssp SEEEECSCCCSHHHHHHHHHHHHH-TTCEEEEEEEECCHHHHHHHHHHTTC-----------------------------
T ss_pred CEEEEeCCcccHHHHHHHHHHHHH-cCCCEEEEEEeCCHHHHHHHHHhCCC-----------------------------
Confidence 689999999888877777654433 34578999999999999999987630
Q ss_pred cCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCCEEEEeCCC--ChHHHHHHHHHHhc
Q 030234 126 QRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEK--PPQEVTSEVQKALS 180 (181)
Q Consensus 126 ~r~dd~~~~i~~Rl~~y~~~~~~l~~~y~~~~~l~~Ida~~--~~~~v~~~i~~~l~ 180 (181)
. ...+.+.+....|. .+. ..|......+.||++. ++++++..|.+.+.
T Consensus 123 --~-~~~~~l~~~~~~~e---~~~-~~~~~~~~~~~Id~~~~~~~~ei~~~I~~~l~ 172 (260)
T 3a4m_A 123 --K-IPNEVIKKMYEKFD---EPG-KKYKWDEPFLIIDTTKDIDFNEIAKKLIEKSK 172 (260)
T ss_dssp --S-SCHHHHHHHHHHCC---CTT-SSCGGGCCSEEEETTSCCCHHHHHHHHHHHHT
T ss_pred --C-CCHHHHHHHHHHhc---Ccc-ccCCCCCCEEEEeCCCCCCHHHHHHHHHhccc
Confidence 0 12344554444333 222 1222123567899987 89999999988764
No 49
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.82 E-value=3.3e-06 Score=64.22 Aligned_cols=98 Identities=12% Similarity=0.040 Sum_probs=55.0
Q ss_pred CCCCeEecCCCCCHHHHHHHHHHHHhcCCCccEEEEeecChHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCCC
Q 030234 44 CQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEP 123 (181)
Q Consensus 44 ~~~G~iLdGfPrt~~Qa~~l~~~l~~~~~~p~~vi~L~~~~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~ 123 (181)
...|+|+||+... ++. -..++.+|+|++|.+++.+|+..+.. ..|.
T Consensus 122 ~~~~~vldg~~~~--~~~---------~~~~d~~i~l~~~~e~~~~R~~~~l~--~rg~--------------------- 167 (227)
T 1cke_A 122 ELPGLIADGRDMG--TVV---------FPDAPVKIFLDASSEERAHRRMLQLQ--VKGF--------------------- 167 (227)
T ss_dssp CTTCEEEEESSCC--CCC---------CTTCSEEEEEECCHHHHHHHHHHHHH--HHTC---------------------
T ss_pred hCCCEEEECCCcc--ceE---------ecCCCEEEEEeCCHHHHHHHHHHHHH--hCCc---------------------
Confidence 3579999998432 221 12578999999999999999543210 0010
Q ss_pred cccCCCCcHHHHHHHHH-HHHHhcHHHHHHHhhcCCEEEEeCC-CChHHHHHHHHHHhc
Q 030234 124 LIQRKDDTAAVLKSRLE-AFHKQTEPVIDYYSKKGIVAQLHAE-KPPQEVTSEVQKALS 180 (181)
Q Consensus 124 l~~r~dd~~~~i~~Rl~-~y~~~~~~l~~~y~~~~~l~~Ida~-~~~~~v~~~i~~~l~ 180 (181)
....++..+.+.+|+. .|...+.|+..++. .+.||++ .++++++++|.+.+.
T Consensus 168 -~~~~~~~~~~i~~R~~~~~~~~~~pl~~~~~----~~~Id~~~~~~~ev~~~I~~~l~ 221 (227)
T 1cke_A 168 -SVNFERLLAEIKERDDRDRNRAVAPLVPAAD----ALVLDSTTLSIEQVIEKALQYAR 221 (227)
T ss_dssp -CCCHHHHHHHHC-------------CCCCTT----CEEEETTTSCHHHHHHHHHHHHH
T ss_pred -cCCHHHHHHHHHHHHHhhhhhcccCccCCCC----EEEEeCCCCCHHHHHHHHHHHHH
Confidence 0011223444555543 45555566654443 3789999 899999999988764
No 50
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.66 E-value=0.0016 Score=47.38 Aligned_cols=106 Identities=11% Similarity=0.141 Sum_probs=63.5
Q ss_pred HHHHHHHHHHcCCCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCccEEEEeecChHHHHHHHhCCCcCCCCCCccccCCC
Q 030234 30 LVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFA 109 (181)
Q Consensus 30 ~v~~ll~~~l~~~~~~~G~iLdGfPrt~~Qa~~l~~~l~~~~~~p~~vi~L~~~~~~~~~Rl~~r~~~~~tg~~y~~~~~ 109 (181)
.+.+++...+... ..-+|+|+...+......+...+...+..+ .+|+|++|.+++.+|+..|..
T Consensus 64 ~~~~~i~~~l~~~--g~~vi~d~~~~~~~~~~~~~~~l~~~~~~~-~~i~l~~~~e~~~~R~~~R~~------------- 127 (183)
T 2vli_A 64 LMLDALQYASREA--AGPLIVPVSISDTARHRRLMSGLKDRGLSV-HHFTLIAPLNVVLERLRRDGQ------------- 127 (183)
T ss_dssp HHHHHHHHHHHHC--SSCEEEEECCCCHHHHHHHHHHHHHTTCCC-EEEEEECCHHHHHHHHHTC---------------
T ss_pred HHHHHHHHHHHhC--CCcEEEeeeccCHHHHHHHHHHHHhcCCce-EEEEEeCCHHHHHHHHHhccc-------------
Confidence 3455555555321 234778887766554444434454444433 569999999999999998741
Q ss_pred CCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCCEEEEeCC-CChHHHHHHHHHHhc
Q 030234 110 PPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAE-KPPQEVTSEVQKALS 180 (181)
Q Consensus 110 pp~~~~~~~~~~~~l~~r~dd~~~~i~~Rl~~y~~~~~~l~~~y~~~~~l~~Ida~-~~~~~v~~~i~~~l~ 180 (181)
|+ ...+.+.+ +.+...++ . | .. .||++ .++++++++|.+.|.
T Consensus 128 -----------------r~-~~~~~~~~----~~~~~~~~-~-~----~~-~Id~~~~~~~~~~~~I~~~l~ 170 (183)
T 2vli_A 128 -----------------PQ-VNVGTVED----RLNELRGE-Q-F----QT-HIDTAGLGTQQVAEQIAAQVG 170 (183)
T ss_dssp --------------------CCHHHHHH----HHHHHTSG-G-G----CS-EEECTTCCHHHHHHHHHHHHT
T ss_pred -----------------cc-hhHHHHHH----HHHhhccc-c-c----ce-EeeCCCCCHHHHHHHHHHHHH
Confidence 11 11233333 33322233 2 2 23 89998 899999999998875
No 51
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.62 E-value=0.00014 Score=54.54 Aligned_cols=93 Identities=14% Similarity=0.095 Sum_probs=59.6
Q ss_pred CCeEecCCCCCHHHHHHHHHHHHhcCCCccEEEEeecChHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCCCcc
Q 030234 46 KGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLI 125 (181)
Q Consensus 46 ~G~iLdGfPrt~~Qa~~l~~~l~~~~~~p~~vi~L~~~~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~ 125 (181)
..+|+||++.-. .+. +.-.+|.+|+|+++.+++.+|+..|....
T Consensus 111 ~~vi~eg~~~~~--~~~-------~~~~~d~~i~l~~~~~~~~~R~~~R~~~~--------------------------- 154 (207)
T 2qt1_A 111 PILIIEGFLLFN--YKP-------LDTIWNRSYFLTIPYEECKRRRSTRVYQP--------------------------- 154 (207)
T ss_dssp CEEEEECTTCTT--CGG-------GTTTCSEEEEEECCHHHHHHHHHHSCCSS---------------------------
T ss_pred CEEEEeehHHcC--cHH-------HHHhcCeeEEEECCHHHHHHHHHHcCCCc---------------------------
Confidence 579999976432 111 11358999999999999999997764210
Q ss_pred cCCCCcHHHHHHHHHHHHHhcHHHHHHHhhc-CCEEEEeCCCChHHHHHHHHHHhc
Q 030234 126 QRKDDTAAVLKSRLEAFHKQTEPVIDYYSKK-GIVAQLHAEKPPQEVTSEVQKALS 180 (181)
Q Consensus 126 ~r~dd~~~~i~~Rl~~y~~~~~~l~~~y~~~-~~l~~Ida~~~~~~v~~~i~~~l~ 180 (181)
++..+.+.. .+........++|... ..++.||+++++++++++|.+.|.
T Consensus 155 ---e~~~~~~~~---~~~~~~~~~~~~~~~~~~~v~~Id~~~~~eev~~~I~~~l~ 204 (207)
T 2qt1_A 155 ---PDSPGYFDG---HVWPMYLKYRQEMQDITWEVVYLDGTKSEEDLFLQVYEDLI 204 (207)
T ss_dssp ---CCCTTHHHH---THHHHHHHHHHHGGGCSSCCEEEETTSCHHHHHHHHHHHHT
T ss_pred ---cchHHHHHH---HHhHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHH
Confidence 011111221 1122222344556543 467889999999999999998875
No 52
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.62 E-value=0.00053 Score=49.79 Aligned_cols=90 Identities=14% Similarity=0.135 Sum_probs=57.0
Q ss_pred CCeEec-CCCCCHHHHHHHHHHHHhcCCCcc-EEEEeecChHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCCC
Q 030234 46 KGFILD-GFPRTEVQAQKLDEMLEKQGKKVD-KVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEP 123 (181)
Q Consensus 46 ~G~iLd-GfPrt~~Qa~~l~~~l~~~~~~p~-~vi~L~~~~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~ 123 (181)
.++|+| |+++ ..+.+.+ ... .++ .+|+|++|.+++.+|+..|.-+
T Consensus 81 ~~~vi~~~~~~-~~~~~~l----~~~--~~~~~vv~l~~~~e~~~~R~~~R~~~-------------------------- 127 (175)
T 1knq_A 81 KVSLIVCSALK-KHYRDLL----REG--NPNLSFIYLKGDFDVIESRLKARKGH-------------------------- 127 (175)
T ss_dssp SEEEEECCCCS-HHHHHHH----HTT--CTTEEEEEEECCHHHHHHHHHTSTTC--------------------------
T ss_pred CcEEEEeCchH-HHHHHHH----Hhc--CCCEEEEEEECCHHHHHHHHHhccCC--------------------------
Confidence 578888 7764 2333333 222 245 7999999999999999987411
Q ss_pred cccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCCEEEEeCCCChHHHHHHHHHHhc
Q 030234 124 LIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 180 (181)
Q Consensus 124 l~~r~dd~~~~i~~Rl~~y~~~~~~l~~~y~~~~~l~~Ida~~~~~~v~~~i~~~l~ 180 (181)
. ...+.+...+..|. +. +|.. ...+.||++.+++++.++|.+.|.
T Consensus 128 ----~-~~~~~~~~~~~~~~----~~--~~~~-~~~~~Id~~~~~~~~~~~i~~~l~ 172 (175)
T 1knq_A 128 ----F-FKTQMLVTQFETLQ----EP--GADE-TDVLVVDIDQPLEGVVASTIEVIK 172 (175)
T ss_dssp ----C-CCHHHHHHHHHHCC----CC--CTTC-TTEEEEECSSCHHHHHHHHHHHHH
T ss_pred ----C-CchHHHHHHHHhhh----Cc--ccCC-CCeEEEeCCCCHHHHHHHHHHHHh
Confidence 1 11333443333221 11 2432 247899999999999999998875
No 53
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.55 E-value=0.00065 Score=49.03 Aligned_cols=93 Identities=16% Similarity=0.229 Sum_probs=59.5
Q ss_pred CCeEec-C--CCCCHHHHHHHHHHHHhcCCCccEEEEeecChHHHHHHHh--CCCcCCCCCCccccCCCCCCCCCCCCCC
Q 030234 46 KGFILD-G--FPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERIT--GRWIHPSSGRTYHTKFAPPKVPGVDDVT 120 (181)
Q Consensus 46 ~G~iLd-G--fPrt~~Qa~~l~~~l~~~~~~p~~vi~L~~~~~~~~~Rl~--~r~~~~~tg~~y~~~~~pp~~~~~~~~~ 120 (181)
.++|++ | ++........|. .++.+|+|++|.+++.+|+. .|..+
T Consensus 71 ~~~vi~~g~~~~~~~~~~~~l~--------~~~~~i~l~~~~e~~~~R~~~~~r~~~----------------------- 119 (173)
T 1e6c_A 71 PNRVVATGGGMVLLEQNRQFMR--------AHGTVVYLFAPAEELALRLQASLQAHQ----------------------- 119 (173)
T ss_dssp SSEEEECCTTGGGSHHHHHHHH--------HHSEEEEEECCHHHHHHHHHHHHCSCC-----------------------
T ss_pred CCeEEECCCcEEeCHHHHHHHH--------cCCeEEEEECCHHHHHHHHhhccCCCC-----------------------
Confidence 456665 5 343434444332 26799999999999999998 77310
Q ss_pred CCCcccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCCEEEEeCC-CChHHHHHHHHHHhc
Q 030234 121 GEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAE-KPPQEVTSEVQKALS 180 (181)
Q Consensus 121 ~~~l~~r~dd~~~~i~~Rl~~y~~~~~~l~~~y~~~~~l~~Ida~-~~~~~v~~~i~~~l~ 180 (181)
|+....+....++..+.....+ +|.. ..+.||++ .+++++.++|.+.+.
T Consensus 120 ------r~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~Id~~~~~~~~~~~~i~~~l~ 169 (173)
T 1e6c_A 120 ------RPTLTGRPIAEEMEAVLREREA---LYQD--VAHYVVDATQPPAAIVCELMQTMR 169 (173)
T ss_dssp ------CCCTTHHHHHHHHHHHHHHHHH---HHHH--HCSEEEETTSCHHHHHHHHHHHTT
T ss_pred ------CCcCCCCCHHHHHHHHHHHHHH---HHHh--CcEEEECCCCCHHHHHHHHHHHhc
Confidence 1222233445566665544433 4443 23678998 899999999998875
No 54
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.52 E-value=0.00099 Score=49.80 Aligned_cols=89 Identities=11% Similarity=0.053 Sum_probs=60.9
Q ss_pred CCCeEecCCCCCHHHHHHHHHHHHhcCCCc--c-EEEEee-cChHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCC
Q 030234 45 QKGFILDGFPRTEVQAQKLDEMLEKQGKKV--D-KVLNFA-IDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVT 120 (181)
Q Consensus 45 ~~G~iLdGfPrt~~Qa~~l~~~l~~~~~~p--~-~vi~L~-~~~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~ 120 (181)
..++|+|+.|....+.. . ..+ + .+|+|+ +|.+++.+|+..|.
T Consensus 103 g~~vi~d~~~~~~~~l~-------~--~~~~~~~~~i~l~~~s~e~l~~Rl~~R~------------------------- 148 (204)
T 2qor_A 103 GKICLFEMNINGVKQLK-------E--SKHIQDGIYIFVKPPSIDILLGRLKNRN------------------------- 148 (204)
T ss_dssp TCEEEEECCHHHHHHHH-------H--CSSCSCCEEEEEECSCHHHHHHHHHTCT-------------------------
T ss_pred CCeEEEEECHHHHHHHH-------H--hcCCCCeEEEEEcCCCHHHHHHHHHHcC-------------------------
Confidence 36799999886655442 1 123 3 789998 99999999998764
Q ss_pred CCCcccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCCEEEEeCCCChHHHHHHHHHHhc
Q 030234 121 GEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 180 (181)
Q Consensus 121 ~~~l~~r~dd~~~~i~~Rl~~y~~~~~~l~~~y~~~~~l~~Ida~~~~~~v~~~i~~~l~ 180 (181)
.++++.+.+|+..++..+.+. |...--++.+|. ++++++++|.+.|.
T Consensus 149 --------~~~~~~i~~rl~~~~~~~~~~---~~~~~d~vi~n~--~~e~~~~~i~~~i~ 195 (204)
T 2qor_A 149 --------TEKPEEINKRMQELTREMDEA---DKVGFNYFIVND--DLARTYAELREYLL 195 (204)
T ss_dssp --------TSCHHHHHHHHHHHHHHHHHH---HHHTCSEEEECS--SHHHHHHHHHHHHH
T ss_pred --------CCCHHHHHHHHHHHHHHHHHh---hhccCcEEEECc--CHHHHHHHHHHHHH
Confidence 134678999998877554432 222212444554 89999999998774
No 55
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=97.49 E-value=0.00012 Score=56.46 Aligned_cols=79 Identities=11% Similarity=0.062 Sum_probs=48.6
Q ss_pred CCccEEEEeecChHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHH-HHHh----c
Q 030234 72 KKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEA-FHKQ----T 146 (181)
Q Consensus 72 ~~p~~vi~L~~~~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~~r~dd~~~~i~~Rl~~-y~~~----~ 146 (181)
..||.+|+|++|.+++.+|+..|... . .+ ....+ +..++.. |... +
T Consensus 148 ~~pd~~i~l~~~~~~~~~R~~~R~r~---~------------------------e~-~~~~~-~~~~v~~~y~~~~~~~~ 198 (241)
T 2ocp_A 148 ITLHGFIYLQASPQVCLKRLYQRARE---E------------------------EK-GIELA-YLEQLHGQHEAWLIHKT 198 (241)
T ss_dssp HCCCEEEEEECCHHHHHHHHHHSCCT---T------------------------TT-TCCHH-HHHHHHHHHHHHHTSCC
T ss_pred cCCCEEEEEECCHHHHHHHHHhcCCc---c------------------------cc-cCCHH-HHHHHHHHHHHHHhhcc
Confidence 37999999999999999999876410 0 00 01122 2233332 2221 2
Q ss_pred HHH-HHHHhhcCCEEEEeCCCChHHHHHHHHHHhc
Q 030234 147 EPV-IDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 180 (181)
Q Consensus 147 ~~l-~~~y~~~~~l~~Ida~~~~~~v~~~i~~~l~ 180 (181)
.|+ .++| ....++.|||++++++|+..+..+++
T Consensus 199 ~p~~~~~~-~~~~~~~Id~~~~~~~v~~~i~~i~~ 232 (241)
T 2ocp_A 199 TKLHFEAL-MNIPVLVLDVNDDFSEEVTKQEDLMR 232 (241)
T ss_dssp SCCCCTTG-GGCCEEEEECCSCTTTCHHHHHHHHH
T ss_pred cccccccc-CCCCEEEEECCCChhhCHHHHHHHHH
Confidence 222 1233 34579999999999888887776653
No 56
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.45 E-value=0.0001 Score=54.25 Aligned_cols=50 Identities=18% Similarity=0.283 Sum_probs=36.1
Q ss_pred CCCeEecCCCCCHHHHHHHHHHHHhcCCCccEEEEeecChHHHHHHHhCCC
Q 030234 45 QKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 95 (181)
Q Consensus 45 ~~G~iLdGfPrt~~Qa~~l~~~l~~~~~~p~~vi~L~~~~~~~~~Rl~~r~ 95 (181)
..++|+||++....+...+.. +...+..|+.+|+|++|.+++.+|+..|.
T Consensus 77 g~~vi~d~~~~~~~~~~~~~~-l~~~~~~~~~~v~l~~~~e~~~~R~~~R~ 126 (193)
T 2rhm_A 77 GQSLIMESNFRVDLDTERMQN-LHTIAPFTPIQIRCVASGDVLVERILSRI 126 (193)
T ss_dssp TCCEEEEECCCHHHHHHHHHH-HHHHSCCEEEEEEEECCHHHHHHHHHHHH
T ss_pred CCeEEEecCCCCHHHHHHHHH-HHHhcCCeEEEEEEeCCHHHHHHHHHHhc
Confidence 368999999943323233322 33445578899999999999999998775
No 57
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.34 E-value=0.00075 Score=50.33 Aligned_cols=91 Identities=18% Similarity=0.155 Sum_probs=57.3
Q ss_pred CCeEecCCCCCHHHHHHHHHHHHhcCCCccEEEEeecChHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCCCcc
Q 030234 46 KGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLI 125 (181)
Q Consensus 46 ~G~iLdGfPrt~~Qa~~l~~~l~~~~~~p~~vi~L~~~~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~ 125 (181)
.++|+|.-.....+.+.+.+ . ..+..+|+|++|.+++.+|+..|...+
T Consensus 102 ~~viid~~~~~~~~~~~l~~----~-~~~~~vv~l~~~~e~l~~Rl~~R~~~~--------------------------- 149 (200)
T 4eun_A 102 VSTIITCSALKRTYRDVLRE----G-PPSVDFLHLDGPAEVIKGRMSKREGHF--------------------------- 149 (200)
T ss_dssp CCEEEEECCCCHHHHHHHTT----S-SSCCEEEEEECCHHHHHHHHTTCSCCS---------------------------
T ss_pred CCEEEEchhhhHHHHHHHHH----h-CCceEEEEEeCCHHHHHHHHHhcccCC---------------------------
Confidence 56777765444444443321 1 235689999999999999998885211
Q ss_pred cCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCCEEEEeCCCChHHHHHHHHHHhc
Q 030234 126 QRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 180 (181)
Q Consensus 126 ~r~dd~~~~i~~Rl~~y~~~~~~l~~~y~~~~~l~~Ida~~~~~~v~~~i~~~l~ 180 (181)
...+.+...+..+ ..+|... ..+.||++.+++++.++|.+.|.
T Consensus 150 ----~~~~~l~~~~~~~-------~~~~~~~-~~~~Id~~~~~~e~~~~I~~~l~ 192 (200)
T 4eun_A 150 ----MPASLLQSQLATL-------EALEPDE-SGIVLDLRQPPEQLIERALTWLD 192 (200)
T ss_dssp ----SCGGGHHHHHHHC-------CCCCTTS-CEEEEETTSCHHHHHHHHHHHHC
T ss_pred ----CCHHHHHHHHHHh-------CCCCCCC-CeEEEECCCCHHHHHHHHHHHHH
Confidence 0112233332222 1233321 47889999999999999999875
No 58
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=97.27 E-value=0.00015 Score=55.66 Aligned_cols=95 Identities=16% Similarity=0.153 Sum_probs=57.9
Q ss_pred CCCeEecCCCCCHHHHHHHHHHHHhcCCCccEEEEeecChHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCCCc
Q 030234 45 QKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPL 124 (181)
Q Consensus 45 ~~G~iLdGfPrt~~Qa~~l~~~l~~~~~~p~~vi~L~~~~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l 124 (181)
..|+|+||++... ..| ...+.+|+|++|.++.++|+..|..
T Consensus 135 ~~~~v~~g~~~~~---~~l--------~~~d~vi~L~a~~e~~~~R~~~~~~---------------------------- 175 (236)
T 1q3t_A 135 QGGIVMDGRDIGT---VVL--------PQAELKIFLVASVDERAERRYKENI---------------------------- 175 (236)
T ss_dssp TSCEEEECSSCSS---SSG--------GGCSEEEEEECCHHHHHHHHHHHHH----------------------------
T ss_pred cCCEEEECCcchh---hhc--------cCCCEEEEEECCHHHHHHHHHHHHH----------------------------
Confidence 3589999998741 111 1358999999999999999743210
Q ss_pred ccCC-CCcHHHHHHHHHH--HHHhcHHHHHHHhhcCCEEEEeCCC-ChHHHHHHHHHHhc
Q 030234 125 IQRK-DDTAAVLKSRLEA--FHKQTEPVIDYYSKKGIVAQLHAEK-PPQEVTSEVQKALS 180 (181)
Q Consensus 125 ~~r~-dd~~~~i~~Rl~~--y~~~~~~l~~~y~~~~~l~~Ida~~-~~~~v~~~i~~~l~ 180 (181)
.|. ..+.+.+.+++.. +......+..+|.. ...+.||++. +++++.++|.+.+.
T Consensus 176 -~R~~~~~~e~~~~~i~~R~~~~~~~~~~p~~~~-~d~~vId~~~~s~eev~~~I~~~l~ 233 (236)
T 1q3t_A 176 -AKGIETDLETLKKEIAARDYKDSHRETSPLKQA-EDAVYLDTTGLNIQEVVEKIKAEAE 233 (236)
T ss_dssp -HTTCCCCHHHHHHHHHHHHHHHTTCSSSCCSCC-TTCEEEECSSCCHHHHHHHHHHHHH
T ss_pred -hcCCCCCHHHHHHHHHHHhhhhhhccccccccc-CCEEEEcCCCCCHHHHHHHHHHHHH
Confidence 011 1234445555542 22222222223332 1247899985 99999999998764
No 59
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.17 E-value=0.0017 Score=46.61 Aligned_cols=91 Identities=23% Similarity=0.342 Sum_probs=54.5
Q ss_pred CCCeEec-C--CCCCHHHHHHHHHHHHhcCCCccEEEEeecChHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCC
Q 030234 45 QKGFILD-G--FPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTG 121 (181)
Q Consensus 45 ~~G~iLd-G--fPrt~~Qa~~l~~~l~~~~~~p~~vi~L~~~~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~ 121 (181)
..+||++ | .+........| . .++.+|+|++|.+++.+|+..|...+
T Consensus 69 ~~~~Vi~~g~~~~~~~~~~~~l----~----~~~~~i~l~~~~e~~~~R~~~r~~r~----------------------- 117 (168)
T 2pt5_A 69 KENVVISTGGGLGANEEALNFM----K----SRGTTVFIDIPFEVFLERCKDSKERP----------------------- 117 (168)
T ss_dssp SSSEEEECCHHHHTCHHHHHHH----H----TTSEEEEEECCHHHHHHHCBCTTCCB-----------------------
T ss_pred cCCeEEECCCCEeCCHHHHHHH----H----cCCEEEEEECCHHHHHHHHhCCCCCC-----------------------
Confidence 3568875 4 33333333332 1 26899999999999999998774100
Q ss_pred CCcccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCCEEEEeCCCChHHHHHHHHHHhc
Q 030234 122 EPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 180 (181)
Q Consensus 122 ~~l~~r~dd~~~~i~~Rl~~y~~~~~~l~~~y~~~~~l~~Ida~~~~~~v~~~i~~~l~ 180 (181)
... +..+.+..++. +. ..+|.. ..++. +++.+++++.++|.+.+.
T Consensus 118 --~~~---~~~~~i~~~~~---~~----~~~~~~-~~~~i-~~~~~~~~~~~~i~~~l~ 162 (168)
T 2pt5_A 118 --LLK---RPLDEIKNLFE---ER----RKIYSK-ADIKV-KGEKPPEEVVKEILLSLE 162 (168)
T ss_dssp --GGG---SCGGGTHHHHH---HH----HHHHTT-SSEEE-ECSSCHHHHHHHHHHHHH
T ss_pred --CCc---chHHHHHHHHH---HH----HHHHHh-CCEEE-CCCCCHHHHHHHHHHHHH
Confidence 000 11222333332 11 234543 34555 888999999999998875
No 60
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.96 E-value=8.5e-05 Score=55.69 Aligned_cols=101 Identities=21% Similarity=0.249 Sum_probs=60.4
Q ss_pred CCeEecCCCCCH--HHHHH--------HHHHHHh-----cCC-CccEEEEeecChHHHHHHHhCCCcCCCCCCccccCCC
Q 030234 46 KGFILDGFPRTE--VQAQK--------LDEMLEK-----QGK-KVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFA 109 (181)
Q Consensus 46 ~G~iLdGfPrt~--~Qa~~--------l~~~l~~-----~~~-~p~~vi~L~~~~~~~~~Rl~~r~~~~~tg~~y~~~~~ 109 (181)
..+|+|||+.+. .|+.. +.+++.. .+. .||.+|+|++|.+++.+|+..|.... .+
T Consensus 89 ~~vi~D~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~l~~~~~~~~~R~~~R~~~~-~~-------- 159 (214)
T 1gtv_A 89 DVVILDRYVASNAAYSAARLHENAAGKAAAWVQRIEFARLGLPKPDWQVLLAVSAELAGERSRGRAQRD-PG-------- 159 (214)
T ss_dssp EEEEEEEEEHHHHHHHHHHEEEEEEEHHHHHHHHHHEEEEECCBCEEEEEEEEEHHHHHHHHHHHHHEB-BE--------
T ss_pred CEEEECCCcccchhhhhcccCccccHHHHHHHHhcccccccCCCCCEEEEEeCCHHHHHHHHHcccccc-cc--------
Confidence 458999999864 24321 1122222 132 69999999999999999999885310 00
Q ss_pred CCCCCCCCCCCCCCcccCCCCc---HHHHHHHHH-HHHHhcHHHHHHHhhcCCEEEEeCCCChHHHHHHHHH
Q 030234 110 PPKVPGVDDVTGEPLIQRKDDT---AAVLKSRLE-AFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQK 177 (181)
Q Consensus 110 pp~~~~~~~~~~~~l~~r~dd~---~~~i~~Rl~-~y~~~~~~l~~~y~~~~~l~~Ida~~~~~~v~~~i~~ 177 (181)
|..|. ...+.+|+. .|.+. .+.|. ...++.||+++++++|+++|.+
T Consensus 160 -----------------~~~d~~e~~~~~~~~~~~~~~~~----~~~~~-~~~~~vId~~~~~~~v~~~i~~ 209 (214)
T 1gtv_A 160 -----------------RARDNYERDAELQQRTGAVYAEL----AAQGW-GGRWLVVGADVDPGRLAATLAP 209 (214)
T ss_dssp -----------------EEEEEEEEEHHHHHHHHHHHHHH----HHEEE-EEEEEEEEEEEBHHHHHHHHC-
T ss_pred -----------------cccccccccHHHHHHHHHHHHHH----HHhCC-CCCEEEEeCCCCHHHHHHHhcC
Confidence 11111 134555554 34332 22221 1357899999999999999864
No 61
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.93 E-value=0.0013 Score=48.27 Aligned_cols=44 Identities=9% Similarity=-0.027 Sum_probs=31.7
Q ss_pred eEecCCCCCHHHHHHHHHHHHhcCCCccEEEEeecChHHHHHHHh
Q 030234 48 FILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERIT 92 (181)
Q Consensus 48 ~iLdGfPrt~~Qa~~l~~~l~~~~~~p~~vi~L~~~~~~~~~Rl~ 92 (181)
+|.||+.........+...+...+ .|+.+|+|++|.+++.+|+.
T Consensus 88 vi~d~~~~~~~~r~~~~~~~~~~~-~~~~~v~L~~~~e~~~~R~~ 131 (186)
T 2yvu_A 88 VICSFVSPYKQARNMVRRIVEEEG-IPFLEIYVKASLEEVIRRDP 131 (186)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTT-CCEEEEEEECCHHHHHHHCH
T ss_pred EEEeCccccHHHHHHHHHHhhccC-CCeEEEEEeCCHHHHHHhhh
Confidence 456887665555555555454444 68999999999999999974
No 62
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.71 E-value=0.011 Score=46.00 Aligned_cols=99 Identities=16% Similarity=0.225 Sum_probs=59.0
Q ss_pred CeEe---cCCCCCHHHHHHHHHHHHhcCCCccEEEEeecChHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCCC
Q 030234 47 GFIL---DGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEP 123 (181)
Q Consensus 47 G~iL---dGfPrt~~Qa~~l~~~l~~~~~~p~~vi~L~~~~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~ 123 (181)
++|+ .|.|........|. .+.+|+|++|.+++.+|+..+.... .+
T Consensus 121 ~~Via~GgG~v~~~~~~~~l~---------~~~vV~L~a~~e~l~~Rl~~~~~~~-----------------------Rp 168 (250)
T 3nwj_A 121 QVVVSTGGGAVIRPINWKYMH---------KGISIWLDVPLEALAHRIAAVGTGS-----------------------RP 168 (250)
T ss_dssp SEEEECCGGGGGSHHHHHHHT---------TSEEEEEECCHHHHHHHHHC------------------------------
T ss_pred CcEEecCCCeecCHHHHHHHh---------CCcEEEEECCHHHHHHHHhhcCCCC-----------------------CC
Confidence 5555 57888777766541 2689999999999999998632100 01
Q ss_pred ccc--CCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCCEEEE----------e-CCCChHHHHHHHHHHhc
Q 030234 124 LIQ--RKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQL----------H-AEKPPQEVTSEVQKALS 180 (181)
Q Consensus 124 l~~--r~dd~~~~i~~Rl~~y~~~~~~l~~~y~~~~~l~~I----------d-a~~~~~~v~~~i~~~l~ 180 (181)
|.. +++|+.+....++....+...| +|.....++.+ | ...+++++.+.|.+.|.
T Consensus 169 l~~~~~~~d~~~~~~~~l~~l~~eR~~---lY~~ad~vi~~~~~~~~~~~iDTs~~s~eev~~~I~~~i~ 235 (250)
T 3nwj_A 169 LLHDDESGDTYTAALNRLSTIWDARGE---AYTKASARVSLENITLKLGYRSVSDLTPAEIAIEAFEQVQ 235 (250)
T ss_dssp ---------CHHHHHHHHHHHHHHHHH---HHTTSSEEEEHHHHHHHHTCSSGGGCCHHHHHHHHHHHHH
T ss_pred cccCCCcccchhhHHHHHHHHHHHHHH---HHhhCCEEEEecccccccccccCCCCCHHHHHHHHHHHHH
Confidence 111 3444545555666665555554 46544445543 4 45699999999988764
No 63
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.69 E-value=0.0021 Score=48.38 Aligned_cols=87 Identities=18% Similarity=0.173 Sum_probs=57.2
Q ss_pred CCeEecCCCCCHHHHHHHHHHHHhcCCCccEEEEeecChHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCCCcc
Q 030234 46 KGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLI 125 (181)
Q Consensus 46 ~G~iLdGfPrt~~Qa~~l~~~l~~~~~~p~~vi~L~~~~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~ 125 (181)
.++++.|+|...+.. +. ..+|.+|+|++|.+++.+|+..|.
T Consensus 107 ~~~vi~~~~~l~~~~--~~-------~~~d~vi~l~~~~e~~~~Rl~~R~------------------------------ 147 (218)
T 1vht_A 107 SPYVLWVVPLLVENS--LY-------KKANRVLVVDVSPETQLKRTMQRD------------------------------ 147 (218)
T ss_dssp SSEEEEECTTTTTTT--GG-------GGCSEEEEEECCHHHHHHHHHHHH------------------------------
T ss_pred CCEEEEEeeeeeccC--cc-------ccCCEEEEEECCHHHHHHHHHHcC------------------------------
Confidence 467777778654432 21 258999999999999999998762
Q ss_pred cCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCCEEEEeCCCChHHHHHHHHHHhc
Q 030234 126 QRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 180 (181)
Q Consensus 126 ~r~dd~~~~i~~Rl~~y~~~~~~l~~~y~~~~~l~~Ida~~~~~~v~~~i~~~l~ 180 (181)
..+.+.+.+|+... .+...++.... +.||++.+++++.++|.+.+.
T Consensus 148 ---~~~~~~~~~~~~~~----~~~~~~~~~ad--~vId~~~~~~~~~~~I~~~l~ 193 (218)
T 1vht_A 148 ---DVTREHVEQILAAQ----ATREARLAVAD--DVIDNNGAPDAIASDVARLHA 193 (218)
T ss_dssp ---TCCHHHHHHHHHHS----CCHHHHHHHCS--EEEECSSCTTSHHHHHHHHHH
T ss_pred ---CCCHHHHHHHHHhc----CChHHHHHhCC--EEEECCCCHHHHHHHHHHHHH
Confidence 11244566666541 11222333222 578999999999999988764
No 64
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.65 E-value=0.015 Score=42.24 Aligned_cols=72 Identities=14% Similarity=0.204 Sum_probs=43.2
Q ss_pred cEEEEeecChHHHHHHH--hCCCcCCCCCCccccCCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHHhcHHHHHH
Q 030234 75 DKVLNFAIDDAVLEERI--TGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDY 152 (181)
Q Consensus 75 ~~vi~L~~~~~~~~~Rl--~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~~r~dd~~~~i~~Rl~~y~~~~~~l~~~ 152 (181)
..+|+|++|.+++.+|+ ..+.. |+....+....++........+ +
T Consensus 99 ~~vi~L~~~~e~l~~Rl~~~~~~~------------------------------rp~~~~~~~~~~l~~~~~~r~~---~ 145 (185)
T 3trf_A 99 GVVIYLTASIDTQLKRIGQKGEMR------------------------------RPLFIKNNSKEKLQQLNEIRKP---L 145 (185)
T ss_dssp EEEEEEECCHHHHHHHHHCCTTCS------------------------------SCCCCCHHHHHHHHHHHHHHHH---H
T ss_pred CcEEEEECCHHHHHHHHhhcCCCC------------------------------CCCCCCCCHHHHHHHHHHHHHH---H
Confidence 38999999999999999 43321 2222212222333332222222 3
Q ss_pred HhhcCCEEEEeCCC-ChHHHHHHHHHHhc
Q 030234 153 YSKKGIVAQLHAEK-PPQEVTSEVQKALS 180 (181)
Q Consensus 153 y~~~~~l~~Ida~~-~~~~v~~~i~~~l~ 180 (181)
|... --+.||++. +++++.+.|.+.+.
T Consensus 146 y~~~-ad~~Idt~~~~~~e~~~~I~~~l~ 173 (185)
T 3trf_A 146 YQAM-ADLVYPTDDLNPRQLATQILVDIK 173 (185)
T ss_dssp HHHH-CSEEEECTTCCHHHHHHHHHHHSC
T ss_pred Hhhc-CCEEEECCCCCHHHHHHHHHHHHH
Confidence 3221 126788887 89999999998775
No 65
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.60 E-value=0.0013 Score=49.44 Aligned_cols=95 Identities=14% Similarity=0.082 Sum_probs=54.0
Q ss_pred CCeEecCCCCC-HHHHHHHHHHHHh-----cCCCccEEEEeecChHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCC
Q 030234 46 KGFILDGFPRT-EVQAQKLDEMLEK-----QGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDV 119 (181)
Q Consensus 46 ~G~iLdGfPrt-~~Qa~~l~~~l~~-----~~~~p~~vi~L~~~~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~ 119 (181)
..+|+| |+.. ....+.+..+... ....|+.+|+|++|.+++.+|+ +|..
T Consensus 99 ~~VI~d-~~~~~~~~~~~l~~l~~~~~~~~~~~~p~~vi~Ld~~~e~~~~R~-~r~~----------------------- 153 (211)
T 1m7g_A 99 SIAITS-FISPYRKDRDTARQLHEVATPGEETGLPFVEVYVDVPVEVAEQRD-PKGL----------------------- 153 (211)
T ss_dssp CEEEEE-CCCCCHHHHHHHHHHHHCCCTTCSCCCCEEEEEEECCHHHHHTSC-TTCH-----------------------
T ss_pred CEEEEe-cCCccHHHHHHHHHHhhhcccccccCCCeEEEEEeCCHHHHHHhh-hHHH-----------------------
Confidence 457778 7631 1223344433321 1126799999999999999885 2210
Q ss_pred CCCCcccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhc-CCEEEEeCCC-ChHHHHHHHHHHhc
Q 030234 120 TGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKK-GIVAQLHAEK-PPQEVTSEVQKALS 180 (181)
Q Consensus 120 ~~~~l~~r~dd~~~~i~~Rl~~y~~~~~~l~~~y~~~-~~l~~Ida~~-~~~~v~~~i~~~l~ 180 (181)
..+.-..|......+..+|... ...+.||++. ++++++++|.+.|.
T Consensus 154 ---------------~~~~r~~~~~~~~~~~~~y~~~~~~~~~IDt~~~s~eev~~~I~~~l~ 201 (211)
T 1m7g_A 154 ---------------YKKAREGVIKEFTGISAPYEAPANPEVHVKNYELPVQDAVKQIIDYLD 201 (211)
T ss_dssp ---------------HHHHHHTSSSSCBTTTBCCCCCSSCSEEEECSSSCHHHHHHHHHHHHH
T ss_pred ---------------HHHHHhcchhhhhhhhhhccCCCCCeEEEECCCCCHHHHHHHHHHHHH
Confidence 0000111222222333345421 2347899999 99999999998764
No 66
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.54 E-value=0.014 Score=42.72 Aligned_cols=55 Identities=20% Similarity=0.283 Sum_probs=36.1
Q ss_pred CHHHHHHHHHHHHcCCCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCccEEEEeecChHHHHHHHhCCC
Q 030234 27 SDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 95 (181)
Q Consensus 27 pd~~v~~ll~~~l~~~~~~~G~iLdGfPrt~~Qa~~l~~~l~~~~~~p~~vi~L~~~~~~~~~Rl~~r~ 95 (181)
+++.+.+.+...+.. ..|+|+|+..+. .|+. ..++.||+|++|.+++.+|+.+|.
T Consensus 68 ~~~~~~~~l~~~~~~---~g~~vi~~~~~~-----~~~~------~~~~~vi~l~~~~e~~~~Rl~~R~ 122 (184)
T 1y63_A 68 DEDRLLDFMEPIMVS---RGNHVVDYHSSE-----LFPE------RWFHMVVVLHTSTEVLFERLTKRQ 122 (184)
T ss_dssp HHHHHHHHHHHHHTS---SSEEEEECSCCT-----TSCG------GGCSEEEEEECCHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHhc---cCCEEEeCchHh-----hhhh------ccCCEEEEEECCHHHHHHHHHhCC
Confidence 344445555544422 358999987442 1211 136789999999999999999874
No 67
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.52 E-value=0.0078 Score=44.45 Aligned_cols=84 Identities=12% Similarity=-0.010 Sum_probs=55.0
Q ss_pred CCeEecCCCCCHHHHHHHHHHHHhcCCCccEEEEeecChHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCCCcc
Q 030234 46 KGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLI 125 (181)
Q Consensus 46 ~G~iLdGfPrt~~Qa~~l~~~l~~~~~~p~~vi~L~~~~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~ 125 (181)
.++|+||.... . . ..-.++.+|+|++|.++..+|+.+|..
T Consensus 119 ~~~vi~g~~~~--~-~--------~~~~~d~~i~l~a~~e~~~~R~~~r~~----------------------------- 158 (208)
T 3ake_A 119 PPFVAEGRDMG--T-A--------VFPEAAHKFYLTASPEVRAWRRARERP----------------------------- 158 (208)
T ss_dssp SCEEEEESSCC--C-C--------CCTTCSEEEEEECCHHHHHHHHHHTSS-----------------------------
T ss_pred CCEEEEcccee--E-E--------EecCCcEEEEEECCHHHHHHHHHhhcc-----------------------------
Confidence 68999998543 0 1 112478999999999999999987631
Q ss_pred cCCCCcHHHHHHHHH----HHHHhcHHHHHHHhhcCCEEEEeCCC-ChHHHHHHHHHHhc
Q 030234 126 QRKDDTAAVLKSRLE----AFHKQTEPVIDYYSKKGIVAQLHAEK-PPQEVTSEVQKALS 180 (181)
Q Consensus 126 ~r~dd~~~~i~~Rl~----~y~~~~~~l~~~y~~~~~l~~Ida~~-~~~~v~~~i~~~l~ 180 (181)
.+.+.+.+++. .|.... ......+.||.+. +++++.++|.+.++
T Consensus 159 ----~~~~~~~~~~~~R~~~~~~~~-------~~~ad~~~Id~~~~~~ee~~~~I~~~~~ 207 (208)
T 3ake_A 159 ----QAYEEVLRDLLRRDERDKAQS-------APAPDALVLDTGGMTLDEVVAWVLAHIR 207 (208)
T ss_dssp ----SCHHHHHHHHHHHHHTC--CC-------CCCTTCEEEETTTSCHHHHHHHHHHHHH
T ss_pred ----cCHHHHHHHHHHHHHHHhhcc-------cCCCCEEEEECCCCCHHHHHHHHHHHHh
Confidence 11233444443 232211 2222357899996 99999999998875
No 68
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.47 E-value=0.002 Score=49.84 Aligned_cols=95 Identities=14% Similarity=0.097 Sum_probs=57.7
Q ss_pred CCCeEecCCCCCHHHHHHHHHHHHhcCCCccEEEEeecChHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCCCc
Q 030234 45 QKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPL 124 (181)
Q Consensus 45 ~~G~iLdGfPrt~~Qa~~l~~~l~~~~~~p~~vi~L~~~~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l 124 (181)
..++|+||++--... . +.. .++.+|+|++|.+++++|+..|..
T Consensus 131 ~~~vIveG~~~~~~~-~-~~~-------~~d~vi~l~~~~e~~~~R~~~R~~---------------------------- 173 (252)
T 1uj2_A 131 ADVVLFEGILAFYSQ-E-VRD-------LFQMKLFVDTDADTRLSRRVLRDI---------------------------- 173 (252)
T ss_dssp CSEEEEECTTTTSSH-H-HHH-------HCSEEEEEECCHHHHHHHHHHHHH----------------------------
T ss_pred CcEEEEeeeccccCH-H-HHH-------hcCeeEEEeCCHHHHHHHHHHHHH----------------------------
Confidence 357999997753111 1 111 258999999999999999987631
Q ss_pred ccCCCCcHHHHHHHHHH-----HHHhcHHHHHHHhhcCCEE--EEeCCCChHHHHHHHHHHhc
Q 030234 125 IQRKDDTAAVLKSRLEA-----FHKQTEPVIDYYSKKGIVA--QLHAEKPPQEVTSEVQKALS 180 (181)
Q Consensus 125 ~~r~dd~~~~i~~Rl~~-----y~~~~~~l~~~y~~~~~l~--~Ida~~~~~~v~~~i~~~l~ 180 (181)
..| ..+.+.+.+++.. |.+.+.+. +.....++ .||++.++++++++|.+.+.
T Consensus 174 ~~r-g~~~e~i~~~~~~~~~~~~~~~i~~~---~~~ad~vI~~~id~~~s~e~v~~~I~~~l~ 232 (252)
T 1uj2_A 174 SER-GRDLEQILSQYITFVKPAFEEFCLPT---KKYADVIIPRGADNLVAINLIVQHIQDILN 232 (252)
T ss_dssp HHS-CCCHHHHHHHHHHTHHHHHHHHTGGG---GGGCSEEEETGGGCHHHHHHHHHHHHHHHH
T ss_pred hhh-CCCHHHHHHHHHHhccHHHHHHhhhh---hhcCcEEEecCCCChhHHHHHHHHHHHHHc
Confidence 001 1245556655543 22222121 22222333 35888899999999998774
No 69
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.44 E-value=0.0067 Score=43.54 Aligned_cols=71 Identities=14% Similarity=0.095 Sum_probs=42.3
Q ss_pred CccEEEEeecChHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCCCcccCCCCc-HHHHHHHHHHHHHhcHHHHH
Q 030234 73 KVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDT-AAVLKSRLEAFHKQTEPVID 151 (181)
Q Consensus 73 ~p~~vi~L~~~~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~~r~dd~-~~~i~~Rl~~y~~~~~~l~~ 151 (181)
.++.+|+|++|.+++++|+..|... + |+... .+.+...+.. . ..
T Consensus 96 ~~~~vi~l~~~~e~~~~Rl~~r~~~---~-------------------------r~~~~~~~~~~~~~~~----r---~~ 140 (168)
T 1zuh_A 96 GLGTTFYLKMDFETLIKRLNQKERE---K-------------------------RPLLNNLTQAKELFEK----R---QA 140 (168)
T ss_dssp TSEEEEEEECCHHHHHHHHCC------------------------------------CCTTHHHHHHHHH----H---HH
T ss_pred cCCEEEEEECCHHHHHHHHhccCCC---C-------------------------CCCccCHHHHHHHHHH----H---HH
Confidence 3789999999999999999877310 0 11111 2334333322 1 12
Q ss_pred HHhhcCCEEEEeCCCChHHHHHHHHHHh
Q 030234 152 YYSKKGIVAQLHAEKPPQEVTSEVQKAL 179 (181)
Q Consensus 152 ~y~~~~~l~~Ida~~~~~~v~~~i~~~l 179 (181)
+|... .-+.||++.+++++.++|.+.|
T Consensus 141 ~~~~~-a~~~Id~~~~~e~~~~~I~~~l 167 (168)
T 1zuh_A 141 LYEKN-ASFIIDARGGLNNSLKQVLQFI 167 (168)
T ss_dssp HHHHT-CSEEEEGGGCHHHHHHHHHHC-
T ss_pred HHHHH-CCEEEECCCCHHHHHHHHHHHh
Confidence 34332 2356888889999999998765
No 70
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.43 E-value=0.0086 Score=43.55 Aligned_cols=73 Identities=19% Similarity=0.309 Sum_probs=46.1
Q ss_pred ccEEEEeecChHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHHhcHHHHHHH
Q 030234 74 VDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYY 153 (181)
Q Consensus 74 p~~vi~L~~~~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~~r~dd~~~~i~~Rl~~y~~~~~~l~~~y 153 (181)
.+.+|+|++|.+++.+|+..|...+ +.. .++.. .++..+..... .+|
T Consensus 94 ~~~vV~L~~~~e~~~~Rl~~r~~r~-------------------------~~~-~~~~~----~~i~~~~~~r~---~~~ 140 (184)
T 2iyv_A 94 GHTVVYLEISAAEGVRRTGGNTVRP-------------------------LLA-GPDRA----EKYRALMAKRA---PLY 140 (184)
T ss_dssp TSCEEEEECCHHHHHHHTTCCCCCS-------------------------STT-SCCHH----HHHHHHHHHHH---HHH
T ss_pred CCeEEEEeCCHHHHHHHHhCCCCCC-------------------------Ccc-CCCHH----HHHHHHHHHHH---HHH
Confidence 4689999999999999998874211 111 11222 23333322222 345
Q ss_pred hhcCCEEEEeCC-CChHHHHHHHHHHhc
Q 030234 154 SKKGIVAQLHAE-KPPQEVTSEVQKALS 180 (181)
Q Consensus 154 ~~~~~l~~Ida~-~~~~~v~~~i~~~l~ 180 (181)
... ..+.||++ .++++++++|.+.+.
T Consensus 141 ~~~-~~~~Idt~~~s~ee~~~~I~~~l~ 167 (184)
T 2iyv_A 141 RRV-ATMRVDTNRRNPGAVVRHILSRLQ 167 (184)
T ss_dssp HHH-CSEEEECSSSCHHHHHHHHHTTSC
T ss_pred hcc-CCEEEECCCCCHHHHHHHHHHHHh
Confidence 432 23689998 799999999998774
No 71
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.39 E-value=0.019 Score=41.58 Aligned_cols=22 Identities=32% Similarity=0.336 Sum_probs=20.4
Q ss_pred ccEEEEeecChHHHHHHHhCCC
Q 030234 74 VDKVLNFAIDDAVLEERITGRW 95 (181)
Q Consensus 74 p~~vi~L~~~~~~~~~Rl~~r~ 95 (181)
++.+|+|++|.+++.+|+.+|.
T Consensus 97 ~~~vi~L~~~~e~l~~R~~~r~ 118 (180)
T 3iij_A 97 FHIVFVLRTDTNVLYERLETRG 118 (180)
T ss_dssp CSEEEEEECCHHHHHHHHHHTT
T ss_pred CCEEEEEECCHHHHHHHHHHcC
Confidence 7899999999999999999874
No 72
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.30 E-value=0.0073 Score=44.70 Aligned_cols=68 Identities=16% Similarity=0.164 Sum_probs=48.0
Q ss_pred CccEEEEeecChHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHHhcHHHHHH
Q 030234 73 KVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDY 152 (181)
Q Consensus 73 ~p~~vi~L~~~~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~~r~dd~~~~i~~Rl~~y~~~~~~l~~~ 152 (181)
.++.+|+|++|.+++.+|+..|.. +.+.+.+|+..+. +...+
T Consensus 123 ~~~~~i~l~~~~e~~~~Rl~~R~~----------------------------------~~~~~~~~~~~~~----~~~~~ 164 (204)
T 2if2_A 123 NYDKLIVVYAPYEVCKERAIKRGM----------------------------------SEEDFERRWKKQM----PIEEK 164 (204)
T ss_dssp GSSEEEEECCCHHHHHHHHHHTCC----------------------------------CHHHHHHHHTTSC----CHHHH
T ss_pred hCCEEEEEECCHHHHHHHHHHcCC----------------------------------CHHHHHHHHHhCC----ChhHH
Confidence 378999999999999999987621 1244555555431 22344
Q ss_pred HhhcCCEEEEeCCCChHHHHHHHHHHhc
Q 030234 153 YSKKGIVAQLHAEKPPQEVTSEVQKALS 180 (181)
Q Consensus 153 y~~~~~l~~Ida~~~~~~v~~~i~~~l~ 180 (181)
+.... +.||++.++++++++|.+.+.
T Consensus 165 ~~~ad--~vId~~~~~~~~~~~i~~~l~ 190 (204)
T 2if2_A 165 VKYAD--YVIDNSGSIEETYKQVKKVYE 190 (204)
T ss_dssp GGGCS--EECCCSSCHHHHHHHHHHHHH
T ss_pred HhcCC--EEEECCCCHHHHHHHHHHHHH
Confidence 44332 568999999999999998774
No 73
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.26 E-value=0.019 Score=42.57 Aligned_cols=86 Identities=9% Similarity=0.046 Sum_probs=55.5
Q ss_pred CCeEecCCCCCHHHHHHHHHHHHhcCCCccEEEEeecChHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCCCcc
Q 030234 46 KGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLI 125 (181)
Q Consensus 46 ~G~iLdGfPrt~~Qa~~l~~~l~~~~~~p~~vi~L~~~~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~ 125 (181)
.++|+|| |-..+.. +. ...|.+|+|++|.++..+|+..|. |
T Consensus 106 ~~vv~~~-~~l~e~~--~~-------~~~d~vi~l~~~~e~~~~Rl~~R~-----~------------------------ 146 (206)
T 1jjv_A 106 PYTLFVV-PLLIENK--LT-------ALCDRILVVDVSPQTQLARSAQRD-----N------------------------ 146 (206)
T ss_dssp SEEEEEC-TTTTTTT--CG-------GGCSEEEEEECCHHHHHHHHC---------------------------------
T ss_pred CEEEEEe-chhhhcC--cH-------hhCCEEEEEECCHHHHHHHHHHcC-----C------------------------
Confidence 4688888 6432211 11 235899999999999999998763 1
Q ss_pred cCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCCEEEEeCCCChH----HHHHHHHHHhc
Q 030234 126 QRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQ----EVTSEVQKALS 180 (181)
Q Consensus 126 ~r~dd~~~~i~~Rl~~y~~~~~~l~~~y~~~~~l~~Ida~~~~~----~v~~~i~~~l~ 180 (181)
.+.+.+.+|+.. . .+...+|.... +.||.+++++ ++.++|.+.+.
T Consensus 147 ----~~~e~~~~r~~~---q-~~~~~~~~~ad--~vIdn~~~~~~~~~~~~~~i~~~~~ 195 (206)
T 1jjv_A 147 ----NNFEQIQRIMNS---Q-VSQQERLKWAD--DVINNDAELAQNLPHLQQKVLELHQ 195 (206)
T ss_dssp -----CHHHHHHHHHH---S-CCHHHHHHHCS--EEEECCSCHHHHHHHHHHHHHHHHH
T ss_pred ----CCHHHHHHHHHh---c-CChHHHHHhCC--EEEECCCCccccHHHHHHHHHHHHH
Confidence 135667777764 1 23344554333 5788888999 99999987763
No 74
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.15 E-value=0.013 Score=45.16 Aligned_cols=49 Identities=18% Similarity=0.234 Sum_probs=40.4
Q ss_pred CCeEecCCCCCHHHHHHHHHHHHhcCCCccEEEEeecChHHHHHHHhCCC
Q 030234 46 KGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 95 (181)
Q Consensus 46 ~G~iLdGfPrt~~Qa~~l~~~l~~~~~~p~~vi~L~~~~~~~~~Rl~~r~ 95 (181)
.+|||||+|++..|...+...+...|..+ .++++.+|.+++.+|..+|.
T Consensus 110 ~~vVid~~~~~~~~~~~~~~~l~~~g~~v-~lv~l~~~~e~~~~R~~~R~ 158 (253)
T 2p5t_B 110 YNLLIEGTLRTVDVPKKTAQLLKNKGYEV-QLALIATKPELSYLSTLIRY 158 (253)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHTTCEE-EEEEECCCHHHHHHHHHHHH
T ss_pred CCEEEeCCCCCHHHHHHHHHHHHHCCCcE-EEEEEeCCHHHHHHHHHHHH
Confidence 58999999999999888777777666654 46688999999999998874
No 75
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.83 E-value=0.012 Score=43.27 Aligned_cols=88 Identities=15% Similarity=0.144 Sum_probs=57.0
Q ss_pred CCeEecCCCCCHHHHHHHHHHHHhcCCCccEEEEeecChHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCCCcc
Q 030234 46 KGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLI 125 (181)
Q Consensus 46 ~G~iLdGfPrt~~Qa~~l~~~l~~~~~~p~~vi~L~~~~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~ 125 (181)
..+|+|+.|....++... ...+..|+++..+.+++.+|+..|..
T Consensus 98 ~~vi~d~~~~~~~~~~~~-------~~~~~~v~~~~~~~e~l~~Rl~~R~~----------------------------- 141 (205)
T 3tr0_A 98 RDVLLEIDWQGARQIREL-------FPPALSIFILPPSIEALRERLIKRRQ----------------------------- 141 (205)
T ss_dssp CEEEEECCHHHHHHHHHH-------CTTCEEEEEECSCHHHHHHHHHTCTT-----------------------------
T ss_pred CeEEEEECHHHHHHHHHh-------CCCcEEEEEECcCHHHHHHHHHHhCC-----------------------------
Confidence 468899988777666532 13444455555578999999998742
Q ss_pred cCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCCEEEEeCCCChHHHHHHHHHHhc
Q 030234 126 QRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 180 (181)
Q Consensus 126 ~r~dd~~~~i~~Rl~~y~~~~~~l~~~y~~~~~l~~Ida~~~~~~v~~~i~~~l~ 180 (181)
++++.+.+|+..+... ..++... .++.+|. +.+++++++.++|.
T Consensus 142 ----~~~~~i~~rl~~~~~~----~~~~~~~-d~vi~n~--~~~~~~~~l~~~i~ 185 (205)
T 3tr0_A 142 ----DDTAIIEQRLALAREE----MAHYKEF-DYLVVND--NFDQAVQNLIHIIS 185 (205)
T ss_dssp ----SCSSTHHHHHHHHHHH----HTTGGGC-SEEEECS--SHHHHHHHHHHHHH
T ss_pred ----CCHHHHHHHHHHHHHH----HhcccCC-CEEEECC--CHHHHHHHHHHHHH
Confidence 2234577888877443 3344332 3444444 89999999988874
No 76
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.77 E-value=0.012 Score=42.16 Aligned_cols=93 Identities=14% Similarity=0.240 Sum_probs=50.1
Q ss_pred CCeEec---CCCCCHHHHHHHHHHHHhcCCCccEEEEeecChHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCC
Q 030234 46 KGFILD---GFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGE 122 (181)
Q Consensus 46 ~G~iLd---GfPrt~~Qa~~l~~~l~~~~~~p~~vi~L~~~~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~ 122 (181)
.++++. |.+......+.|. ..+.+++|+++.+++.+|+..|...|
T Consensus 74 ~~~v~~~~~~~~~~~~~~~~l~--------~~~~~i~l~~~~~~l~~R~~~r~~r~------------------------ 121 (173)
T 1kag_A 74 QGIVLATGGGSVKSRETRNRLS--------ARGVVVYLETTIEKQLARTQRDKKRP------------------------ 121 (173)
T ss_dssp SSEEEECCTTGGGSHHHHHHHH--------HHSEEEECCCCHHHHHSCC------C------------------------
T ss_pred CCeEEECCCeEEecHHHHHHHH--------hCCEEEEEeCCHHHHHHHHhCCCCCC------------------------
Confidence 466663 5666555555443 24679999999999999988763211
Q ss_pred CcccCCCCc-HHHHHHHHHHHHHhcHHHHHHHhhcCCEEEEeCC-CChHHHHHHHHHHhc
Q 030234 123 PLIQRKDDT-AAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAE-KPPQEVTSEVQKALS 180 (181)
Q Consensus 123 ~l~~r~dd~-~~~i~~Rl~~y~~~~~~l~~~y~~~~~l~~Ida~-~~~~~v~~~i~~~l~ 180 (181)
+. ..++. .+.+...+. ... .+|.... .+.||.+ .++++++++|.+.+.
T Consensus 122 -~~-~~~~~~~~~~~~~~~----~r~---~~~~~~a-~~~id~~~~~~~~~~~~i~~~l~ 171 (173)
T 1kag_A 122 -LL-HVETPPREVLEALAN----ERN---PLYEEIA-DVTIRTDDQSAKVVANQIIHMLE 171 (173)
T ss_dssp -CS-SSSCCCHHHHHHHHH----HHH---HHHHHHC-SEEC-----CHHHHHHHHHHHHC
T ss_pred -CC-CCCCchHHHHHHHHH----HHH---HHHHhhC-CEEEECCCCCHHHHHHHHHHHHH
Confidence 11 11222 444443322 222 2443322 4678988 799999999998875
No 77
>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}
Probab=95.66 E-value=0.063 Score=43.01 Aligned_cols=95 Identities=14% Similarity=0.178 Sum_probs=59.4
Q ss_pred HHHHHHHHHHhcCCCccEEEEeecChHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCCCcccCCCCcHHHHH--
Q 030234 59 QAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLK-- 136 (181)
Q Consensus 59 Qa~~l~~~l~~~~~~p~~vi~L~~~~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~~r~dd~~~~i~-- 136 (181)
|...||.++...| .|++.++|++|.++-.+|+..|..+|.+. + .-++.-+.
T Consensus 177 ~In~FE~~L~~~G-~~~lKf~L~Is~eeq~kR~~~R~~dp~k~----------------------W----k~s~~D~~~~ 229 (304)
T 3czq_A 177 EAPRFEEMIANEG-IHLFKFWINIGREMQLKRFHDRRHDPLKI----------------------W----KLSPMDIAAL 229 (304)
T ss_dssp HHHHHHHHHHHHT-CEEEEEEEECCHHHHHHHHHHHHHCTTTG----------------------G----GCCHHHHHGG
T ss_pred HHHHHHHHHHhCC-CeeEEEEEECCHHHHHHHHHHhhcCcccc----------------------c----CCCHHHHHHH
Confidence 5555666666666 68999999999999999998887655421 0 00111121
Q ss_pred HHHHHHHHhcHHHHHHHhh-cCCEEEEeCCCCh---HHHHHHHHHHhc
Q 030234 137 SRLEAFHKQTEPVIDYYSK-KGIVAQLHAEKPP---QEVTSEVQKALS 180 (181)
Q Consensus 137 ~Rl~~y~~~~~~l~~~y~~-~~~l~~Ida~~~~---~~v~~~i~~~l~ 180 (181)
.....|.+....+...-.. ...++.|||+... -.|.+.|.+.|.
T Consensus 230 ~~~~~y~~a~~~ml~~T~t~~apW~vIda~dk~~arl~v~~~Il~~l~ 277 (304)
T 3czq_A 230 SKWDDYTGKRDRMLKETHTEHGPWAVIRGNDKRRSRINVIRHMLTKLD 277 (304)
T ss_dssp GGHHHHHHHHHHHHHHHCCSSSCEEEEECSSHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHhhccCCCCEEEEECCCcchHHHHHHHHHHHHHh
Confidence 3345555555555544332 2479999999855 456666666553
No 78
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.61 E-value=0.022 Score=44.88 Aligned_cols=86 Identities=21% Similarity=0.148 Sum_probs=57.1
Q ss_pred CCeEecCCCCCHHHHHHHHHHHHhcCCCccEEEEeecChHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCCCcc
Q 030234 46 KGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLI 125 (181)
Q Consensus 46 ~G~iLdGfPrt~~Qa~~l~~~l~~~~~~p~~vi~L~~~~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~ 125 (181)
..+|+||..-. +.. +...+|.+|+|++|.+++++|+..|. |
T Consensus 182 ~~vIveg~~l~--~~~--------~~~~~d~vI~l~a~~ev~~~Rl~~R~-----g------------------------ 222 (281)
T 2f6r_A 182 TLCVIDAAMLL--EAG--------WQSMVHEVWTVVIPETEAVRRIVERD-----G------------------------ 222 (281)
T ss_dssp CEEEEECTTTT--TTT--------GGGGCSEEEEEECCHHHHHHHHHHHH-----C------------------------
T ss_pred CEEEEEechhh--ccc--------hHHhCCEEEEEcCCHHHHHHHHHHcC-----C------------------------
Confidence 57999996321 111 11247899999999999999998763 1
Q ss_pred cCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCCEEEEeCCCChHHHHHHHHHHhc
Q 030234 126 QRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 180 (181)
Q Consensus 126 ~r~dd~~~~i~~Rl~~y~~~~~~l~~~y~~~~~l~~Ida~~~~~~v~~~i~~~l~ 180 (181)
.+.+.+.+|+... .+..+++.... +.||++.++++++++|.+++.
T Consensus 223 ----~s~e~~~~ri~~q----~~~~~~~~~AD--~vIdn~~s~eel~~~I~~~l~ 267 (281)
T 2f6r_A 223 ----LSEAAAQSRLQSQ----MSGQQLVEQSN--VVLSTLWESHVTQSQVEKAWN 267 (281)
T ss_dssp ----CCHHHHHHHHHTS----CCHHHHHHTCS--EEEECSSCHHHHHHHHHHHHH
T ss_pred ----CCHHHHHHHHHHc----CChHhhHhhCC--EEEECCCCHHHHHHHHHHHHH
Confidence 1345566666544 22334443222 568999999999999988764
No 79
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.55 E-value=0.027 Score=41.44 Aligned_cols=86 Identities=16% Similarity=0.186 Sum_probs=33.4
Q ss_pred CCeEecCCCCCHHHHHHHHHHHHhcCCCccEEEEee--cChHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCCC
Q 030234 46 KGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFA--IDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEP 123 (181)
Q Consensus 46 ~G~iLdGfPrt~~Qa~~l~~~l~~~~~~p~~vi~L~--~~~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~ 123 (181)
..+|+|+.+....+... . .|+.++++. ++.+++.+|+..|.
T Consensus 98 ~~vv~d~~~~~~~~~~~---~------~~~~~~i~~~~~~~~~~~~Rl~~R~---------------------------- 140 (207)
T 2j41_A 98 HDVFLEIEVEGAKQVRK---K------FPDALFIFLAPPSLEHLRERLVGRG---------------------------- 140 (207)
T ss_dssp CEEEEECCGGGHHHHHH---H------CTTSEEEEEECCC----------------------------------------
T ss_pred CeEEEEECHHHHHHHHH---h------cCCeEEEEEECCCHHHHHHHHHhcC----------------------------
Confidence 56888887665544331 1 245333333 44667777776552
Q ss_pred cccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCCEEEEeCCCChHHHHHHHHHHhc
Q 030234 124 LIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 180 (181)
Q Consensus 124 l~~r~dd~~~~i~~Rl~~y~~~~~~l~~~y~~~~~l~~Ida~~~~~~v~~~i~~~l~ 180 (181)
+++.+.+.+|+..+.... .+|...+ ++.+| + ++++++++|.+.|.
T Consensus 141 -----~~~~~~~~~rl~~~~~~~----~~~~~~d-~vI~n-~-~~e~~~~~i~~~l~ 185 (207)
T 2j41_A 141 -----TESDEKIQSRINEARKEV----EMMNLYD-YVVVN-D-EVELAKNRIQCIVE 185 (207)
T ss_dssp --------------------CGG----GGGGGCS-EEEEC-S-SHHHHHHHHHHHHH
T ss_pred -----CCCHHHHHHHHHHHHHHH----hccccCC-EEEEC-C-CHHHHHHHHHHHHH
Confidence 234556778888776543 2343333 44444 4 89999999988774
No 80
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.43 E-value=0.025 Score=40.74 Aligned_cols=71 Identities=23% Similarity=0.188 Sum_probs=45.7
Q ss_pred ccEEEEeecChHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCCCcccCCCCc-HHHHHHHHHHHHHhcHHHHHH
Q 030234 74 VDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDT-AAVLKSRLEAFHKQTEPVIDY 152 (181)
Q Consensus 74 p~~vi~L~~~~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~~r~dd~-~~~i~~Rl~~y~~~~~~l~~~ 152 (181)
.+.+|+|++|.+++.+|+..|.. . .|+... .+.+...+. ....+
T Consensus 93 ~~~~i~l~~~~e~~~~R~~~r~~---~-------------------------~r~~~~~~~~i~~~~~-------~r~~~ 137 (175)
T 1via_A 93 AGFCIYLKADFEYLKKRLDKDEI---S-------------------------KRPLFYDEIKAKKLYN-------ERLSK 137 (175)
T ss_dssp GCEEEEEECCHHHHTTCCCGGGT---T-------------------------TSCTTCCHHHHHHHHH-------HHHHH
T ss_pred CCEEEEEeCCHHHHHHHHhcccC---C-------------------------CCCCcccHHHHHHHHH-------HHHHH
Confidence 46899999999999998876631 0 022221 333332222 22245
Q ss_pred HhhcCCEEEEeCC-CChHHHHHHHHHHhc
Q 030234 153 YSKKGIVAQLHAE-KPPQEVTSEVQKALS 180 (181)
Q Consensus 153 y~~~~~l~~Ida~-~~~~~v~~~i~~~l~ 180 (181)
|... ..+.||++ .+++++.+.|.+.+.
T Consensus 138 y~~~-~~~~Idt~~~~~eev~~~I~~~l~ 165 (175)
T 1via_A 138 YEQK-ANFILNIENKNIDELLSEIKKVIK 165 (175)
T ss_dssp HHHH-CSEEEECTTCCHHHHHHHHHHHHC
T ss_pred HHhc-CCEEEECCCCCHHHHHHHHHHHHH
Confidence 5432 25789999 799999999998875
No 81
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.30 E-value=0.042 Score=40.21 Aligned_cols=69 Identities=14% Similarity=0.109 Sum_probs=45.5
Q ss_pred CccEEEEeecChHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHHhcHHHHHH
Q 030234 73 KVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDY 152 (181)
Q Consensus 73 ~p~~vi~L~~~~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~~r~dd~~~~i~~Rl~~y~~~~~~l~~~ 152 (181)
.++.+|+|++|.+++++|+..|. | -+.+.+..|+... . +...+
T Consensus 124 ~~d~~i~l~~~~e~~~~R~~~R~-----~----------------------------~~~~~~~~~i~~~---~-~~~~~ 166 (203)
T 1uf9_A 124 RLHGTLLVAAPLEERVRRVMARS-----G----------------------------LSREEVLARERAQ---M-PEEEK 166 (203)
T ss_dssp GSSEEEEECCCHHHHHHHHHTTT-----C----------------------------CTTHHHHHHHTTS---C-CHHHH
T ss_pred hCCEEEEEECCHHHHHHHHHHcC-----C----------------------------CCHHHHHHHHHHC---C-ChhHH
Confidence 47899999999999999998762 1 0112344444431 1 11222
Q ss_pred HhhcCCEEEEeCCCChHHHHHHHHHHhc
Q 030234 153 YSKKGIVAQLHAEKPPQEVTSEVQKALS 180 (181)
Q Consensus 153 y~~~~~l~~Ida~~~~~~v~~~i~~~l~ 180 (181)
+.... +.||++.+++++.++|.+.+.
T Consensus 167 ~~~ad--~vId~~~~~~~~~~~i~~~~~ 192 (203)
T 1uf9_A 167 RKRAT--WVLENTGSLEDLERALKAVLA 192 (203)
T ss_dssp HHHCS--EEECCSSHHHHHHHHHHHHHH
T ss_pred HHhCC--EEEECCCCHHHHHHHHHHHHH
Confidence 33222 478999999999999988764
No 82
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=94.73 E-value=0.12 Score=42.82 Aligned_cols=61 Identities=13% Similarity=0.116 Sum_probs=46.4
Q ss_pred HHHHHHHHcCCCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCccEEEEeecChHHHHHHHhCCCc
Q 030234 32 VGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWI 96 (181)
Q Consensus 32 ~~ll~~~l~~~~~~~G~iLdGfPrt~~Qa~~l~~~l~~~~~~p~~vi~L~~~~~~~~~Rl~~r~~ 96 (181)
...+...+.. ...+|+|+.+.+..+...+..++...+.. -.+|+|++|.+++.+|+..|..
T Consensus 299 ~~~~~~~l~~---g~~vIiD~~~~~~~~r~~~~~~~~~~~~~-~~~v~l~~~~e~l~~R~~~R~~ 359 (416)
T 3zvl_A 299 VSSCQAALRQ---GKRVVIDNTNPDVPSRARYIQCAKDAGVP-CRCFNFCATIEQARHNNRFREM 359 (416)
T ss_dssp HHHHHHHHHT---TCCEEEESCCCSHHHHHHHHHHHHHHTCC-EEEEEECCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc---CCcEEEeCCCCCHHHHHHHHHHHHHcCCe-EEEEEEeCCHHHHHHHHHhhcc
Confidence 3444444433 36799999999999888887666666554 4689999999999999998864
No 83
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=94.32 E-value=0.05 Score=40.52 Aligned_cols=78 Identities=18% Similarity=0.087 Sum_probs=49.3
Q ss_pred CccEEEEeecChHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCCCcccCC-CCcHHHHHHHHHH--HHHhcHHH
Q 030234 73 KVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRK-DDTAAVLKSRLEA--FHKQTEPV 149 (181)
Q Consensus 73 ~p~~vi~L~~~~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~~r~-dd~~~~i~~Rl~~--y~~~~~~l 149 (181)
..+.+|+|++|.+++.+|+..+.. .|. +++.+.+.+++.. |......+
T Consensus 135 ~~~~vi~l~a~~e~~~~R~~~~~~-----------------------------~r~~~~~~e~~~~~~~~r~~~d~~r~~ 185 (219)
T 2h92_A 135 DADLKVYMIASVEERAERRYKDNQ-----------------------------LRGIESNFEDLKRDIEARDQYDMNREI 185 (219)
T ss_dssp TCSEEEEEECCHHHHHHHHHHHHH-----------------------------HTTCCCCHHHHHHHHHHHHHHHHHCSS
T ss_pred CCCEEEEEECCHHHHHHHHHHHHH-----------------------------hcCcccCHHHHHHHHHHHHHhhhhhhc
Confidence 357899999999999999753210 011 1245667777742 22222222
Q ss_pred HHHHhhcCCEEEEeCCC-ChHHHHHHHHHHhc
Q 030234 150 IDYYSKKGIVAQLHAEK-PPQEVTSEVQKALS 180 (181)
Q Consensus 150 ~~~y~~~~~l~~Ida~~-~~~~v~~~i~~~l~ 180 (181)
..+|.. ...+.||.+. +++++.++|.+.+.
T Consensus 186 ~~~~~~-~d~~~Id~~~~~~ee~~~~I~~~l~ 216 (219)
T 2h92_A 186 SPLRKA-DDAVTLDTTGKSIEEVTDEILAMVS 216 (219)
T ss_dssp SCSCCC-TTCEEEECTTCCHHHHHHHHHHHHH
T ss_pred cccccC-CCeEEEECCCCCHHHHHHHHHHHHh
Confidence 233432 2347899885 99999999998875
No 84
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=93.90 E-value=0.17 Score=36.43 Aligned_cols=46 Identities=11% Similarity=-0.035 Sum_probs=28.6
Q ss_pred eEecCCCCC-HHHHHHHHHHHHhcCCCccEEEEeecChHHHHHHHhCC
Q 030234 48 FILDGFPRT-EVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGR 94 (181)
Q Consensus 48 ~iLdGfPrt-~~Qa~~l~~~l~~~~~~p~~vi~L~~~~~~~~~Rl~~r 94 (181)
+++.|+... ..+...+..++...+ .|+.+|+|++|.+++.+|+..|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~l~~~~e~~~~R~~~~ 125 (179)
T 2pez_A 79 VCITSFISPYTQDRNNARQIHEGAS-LPFFEVFVDAPLHVCEQRDVKG 125 (179)
T ss_dssp EEEEECCCCCHHHHHHHHHHHHHTT-CCEEEEEEECCHHHHHHHCTTS
T ss_pred EEEEecCCcchHHHHHHHHHhhccC-CCeEEEEEeCCHHHHHHHHhhh
Confidence 555565432 222233333333333 6889999999999999998654
No 85
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=93.69 E-value=0.43 Score=36.56 Aligned_cols=51 Identities=10% Similarity=-0.078 Sum_probs=31.1
Q ss_pred HHHHHHHHcCCCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCccEEEEeecChHHHHHHHhC
Q 030234 32 VGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITG 93 (181)
Q Consensus 32 ~~ll~~~l~~~~~~~G~iLdGfPrt~~Qa~~l~~~l~~~~~~p~~vi~L~~~~~~~~~Rl~~ 93 (181)
.+.+...........|+|+||--... . . -...+++|+|++|.++..+|...
T Consensus 132 r~~l~~~~~~~a~~~~~V~~gr~~~~--~-v--------~~~~~~~ifl~A~~e~r~~R~~~ 182 (252)
T 4e22_A 132 REALLRRQRAFREAPGLIADGRDMGT--I-V--------FPDAPVKIFLDASSQERAHRRML 182 (252)
T ss_dssp HHHHHHHHHTTCCSSCEEEEESSCCC--C-C--------STTCSEEEEEECCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCCEEEEeceece--e-e--------cCCCCEEEEEECCHHHHHHHHHH
Confidence 34444443344445789999932110 0 0 01247899999999999998754
No 86
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=93.09 E-value=0.37 Score=35.59 Aligned_cols=92 Identities=15% Similarity=0.074 Sum_probs=55.4
Q ss_pred CCeEecCCCCCHHHHHHHHHHHHhcCCCccEEEEeecChHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCCCcc
Q 030234 46 KGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLI 125 (181)
Q Consensus 46 ~G~iLdGfPrt~~Qa~~l~~~l~~~~~~p~~vi~L~~~~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~ 125 (181)
+-.|||+=+....|.+.. .+..+-.|+++-.+.+++.+|+.+|.
T Consensus 93 ~~vil~id~~g~~~~k~~------~~~~~~~Ifi~pps~e~L~~RL~~Rg------------------------------ 136 (186)
T 1ex7_A 93 KTCILDIDMQGVKSVKAI------PELNARFLFIAPPSVEDLKKRLEGRG------------------------------ 136 (186)
T ss_dssp SEEEEECCHHHHHHHHTC------GGGCCEEEEEECSCHHHHHHHHHHHC------------------------------
T ss_pred CEEEecCCHHHHHHHHHh------cccCceEEEEeCCCHHHHHHHHHhcC------------------------------
Confidence 346777665555554421 11234344444455678888887664
Q ss_pred cCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCCEEEEeCCCChHHHHHHHHHHhcC
Q 030234 126 QRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALSA 181 (181)
Q Consensus 126 ~r~dd~~~~i~~Rl~~y~~~~~~l~~~y~~~~~l~~Ida~~~~~~v~~~i~~~l~~ 181 (181)
.++++.+++||......... .+...--.+.|| .+.++.++++.++|.|
T Consensus 137 ---~e~~e~i~~Rl~~a~~e~~~---~~~~~fD~vIvN--ddle~a~~~l~~iI~a 184 (186)
T 1ex7_A 137 ---TETEESINKRLSAAQAELAY---AETGAHDKVIVN--DDLDKAYKELKDFIFA 184 (186)
T ss_dssp ---CSCHHHHHHHHHHHHHHHHH---HTTTCSSEEEEC--SSHHHHHHHHHHHHTT
T ss_pred ---CCCHHHHHHHHHHHHHHHhh---ccccCCcEEEEC--cCHHHHHHHHHHHHHh
Confidence 35688999999977655331 111111245555 4799999999998864
No 87
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=92.87 E-value=0.35 Score=38.00 Aligned_cols=50 Identities=20% Similarity=0.261 Sum_probs=38.2
Q ss_pred CCCeEecCCCCCHHHHHHHHHHHHhcCCCccEEEEeecChHHH----HHHHhCCC
Q 030234 45 QKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVL----EERITGRW 95 (181)
Q Consensus 45 ~~G~iLdGfPrt~~Qa~~l~~~l~~~~~~p~~vi~L~~~~~~~----~~Rl~~r~ 95 (181)
...+||||.+++..|...+.+.+...|.. ..+++|.+|.+.+ .+|+..|.
T Consensus 110 g~~vIld~~~~~~~~~~~~~~~~~~~g~~-~~~i~~~~p~~~~~l~~~~Rl~~R~ 163 (287)
T 1gvn_B 110 GYNLVIEGTGRTTDVPIQTATMLQAKGYE-TKMYVMAVPKINSYLGTIERYETMY 163 (287)
T ss_dssp TCCEEECCCCCCSHHHHHHHHHHHTTTCE-EEEEEECCCHHHHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCHHHHHHHHHHHHhCCCc-EEEEEEECCHHHHHHHHHHHHHHHH
Confidence 36799999999988777665555555543 4578999999999 88887654
No 88
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=92.76 E-value=0.39 Score=36.24 Aligned_cols=69 Identities=12% Similarity=0.091 Sum_probs=49.7
Q ss_pred CccEEEEeecChHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHHhcHHHHHH
Q 030234 73 KVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDY 152 (181)
Q Consensus 73 ~p~~vi~L~~~~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~~r~dd~~~~i~~Rl~~y~~~~~~l~~~ 152 (181)
..|.+|++++|.++.++|+..|. .-+.+.+.+|+... + +..+.
T Consensus 131 ~~D~vi~V~ap~e~r~~Rl~~Rd---------------------------------g~s~eea~~ri~~Q---~-~~eek 173 (210)
T 4i1u_A 131 RCDRVLVVDCPVDTQIARVMQRN---------------------------------GFTREQVEAIIARQ---A-TREAR 173 (210)
T ss_dssp HCSEEEEEECCHHHHHHHHHHHH---------------------------------CCCHHHHHHHHHHS---C-CHHHH
T ss_pred cCCeEEEEECCHHHHHHHHHhcC---------------------------------CCCHHHHHHHHHHc---C-ChHHH
Confidence 37999999999999999999763 23467777777642 2 33344
Q ss_pred HhhcCCEEEEeCC-CChHHHHHHHHHHhc
Q 030234 153 YSKKGIVAQLHAE-KPPQEVTSEVQKALS 180 (181)
Q Consensus 153 y~~~~~l~~Ida~-~~~~~v~~~i~~~l~ 180 (181)
+..-. +.||.+ ++.+++..+|.+++.
T Consensus 174 ~~~AD--~VIdN~~gsle~l~~qV~~l~~ 200 (210)
T 4i1u_A 174 LAAAD--DVIVNDAATPDALAVQVDALHQ 200 (210)
T ss_dssp HHTCS--EEEECSSCCHHHHHHHHHHHHH
T ss_pred HHhCC--EEEECCCCCHHHHHHHHHHHHH
Confidence 43222 567888 899999999987653
No 89
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=92.20 E-value=0.11 Score=38.75 Aligned_cols=51 Identities=14% Similarity=0.239 Sum_probs=30.0
Q ss_pred CcccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCCEEEEeCCCChHHHHHHHHHHhc
Q 030234 123 PLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 180 (181)
Q Consensus 123 ~l~~r~dd~~~~i~~Rl~~y~~~~~~l~~~y~~~~~l~~Ida~~~~~~v~~~i~~~l~ 180 (181)
||..|..++++.+.+||....... .++... -++.+|. +.++++++|.++|.
T Consensus 137 Rl~~R~~~~~e~i~~Rl~~~~~e~----~~~~~~-d~vivN~--~~~~~~~~l~~~i~ 187 (208)
T 3tau_A 137 RIIGRGTESMEVVEERMETAKKEI----EMMASY-DYAVVND--VVANAVQKIKGIVE 187 (208)
T ss_dssp C-------CCHHHHHHHHHHHHHH----HHGGGS-SEEEECS--SHHHHHHHHHHHHH
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHH----HhhccC-CEEEECc--CHHHHHHHHHHHHH
Confidence 344454566788999998876543 333322 3555654 69999999988874
No 90
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=92.19 E-value=0.72 Score=39.38 Aligned_cols=98 Identities=16% Similarity=0.128 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHhcCCCccEEEEeecChHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCCCcccCCCCcHHHHH
Q 030234 57 EVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLK 136 (181)
Q Consensus 57 ~~Qa~~l~~~l~~~~~~p~~vi~L~~~~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~~r~dd~~~~i~ 136 (181)
..|...||.+|...|. |.+.++|++|.++..+|+..|..+|.+. +.--+.|-. -.
T Consensus 132 ~~~i~~FE~~L~~~g~-~i~KffL~is~eeq~kRl~~R~~~p~k~----------------------Wk~s~~D~~--~~ 186 (500)
T 3czp_A 132 IDAAERFERMLCDEGA-LLFKFWFHLSKKQLKERLKALEKDPQHS----------------------WKLSPLDWK--QS 186 (500)
T ss_dssp HHHHHHHHHHHHHTTC-EEEEEEEECCHHHHHHCC-----------------------------------CSSCTT--SH
T ss_pred HHHHHHHHHHHhcCCC-eEEEEEEECCHHHHHHHHHHHhcCCccc----------------------CCCCHHHHH--HH
Confidence 3355666776776654 7899999999999999999998766431 000111110 11
Q ss_pred HHHHHHHHhcHHHHHHHhhc-CCEEEEeCCC---ChHHHHHHHHHHh
Q 030234 137 SRLEAFHKQTEPVIDYYSKK-GIVAQLHAEK---PPQEVTSEVQKAL 179 (181)
Q Consensus 137 ~Rl~~y~~~~~~l~~~y~~~-~~l~~Ida~~---~~~~v~~~i~~~l 179 (181)
.+...|.+....++..-... -.++.|+|+. ..-.|.+.|.+.|
T Consensus 187 ~~~~~Y~~a~e~~l~~T~t~~APW~vI~a~dk~~arl~v~~~il~~l 233 (500)
T 3czp_A 187 EVYDRFVHYGERVLRRTSRDYAPWYVVEGADERYRALTVGRILLEGL 233 (500)
T ss_dssp HHHHHHHHHHHHHHHHHCBTTBCEEEEECSCHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhhcCCCCCEEEEECCCcchhHHHHHHHHHHHH
Confidence 33445555544444433222 3699999997 3355666665554
No 91
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=90.88 E-value=0.49 Score=40.49 Aligned_cols=82 Identities=12% Similarity=0.157 Sum_probs=51.9
Q ss_pred CCCeEecCCCCCHHHHHHHHHHHHhcCCCccEEEEeecC-hHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCCC
Q 030234 45 QKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAID-DAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEP 123 (181)
Q Consensus 45 ~~G~iLdGfPrt~~Qa~~l~~~l~~~~~~p~~vi~L~~~-~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~ 123 (181)
...+|+|+...+..+.+.+.+.+...+.. -++|.+.|+ ++++.+|+..|... +-.|+
T Consensus 119 g~~VIvDat~~~~~~R~~~~~~a~~~g~~-v~~l~~~~~d~e~i~~ri~~r~~~---rPdl~------------------ 176 (520)
T 2axn_A 119 GQIAVFDATNTTRERRHMILHFAKENDFK-AFFIESVCDDPTVVASNIMEVKIS---SPDYK------------------ 176 (520)
T ss_dssp CCEEEEESCCCSHHHHHHHHHHHHHHTCE-EEEEEEECCCHHHHHHHHHHHTTT---SGGGT------------------
T ss_pred CceEEecCCCCCHHHHHHHHHHHHHcCCe-EEEEEEeCChHHHHHHHHHhhhhc---CCccc------------------
Confidence 46799999999999888877666555542 356677777 56667777655421 11110
Q ss_pred cccC-CCCcHHHHHHHHHHHHHhcHHHH
Q 030234 124 LIQR-KDDTAAVLKSRLEAFHKQTEPVI 150 (181)
Q Consensus 124 l~~r-~dd~~~~i~~Rl~~y~~~~~~l~ 150 (181)
.. .++..+.+.+|+..|.....|+.
T Consensus 177 --~~d~e~~~~~~~~Ri~~y~~~Yepi~ 202 (520)
T 2axn_A 177 --DCNSAEAMDDFMKRISCYEASYQPLD 202 (520)
T ss_dssp --TSCHHHHHHHHHHHHHHHHTTCCCCC
T ss_pred --cCCHHHHHHHHHHHHHhhhhhhcccC
Confidence 00 01123456889999988877765
No 92
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=90.52 E-value=1.4 Score=31.09 Aligned_cols=47 Identities=19% Similarity=0.119 Sum_probs=29.1
Q ss_pred CCeEecCCCC-CHHHHHHHHHHHHhcCCCccEEEEeecChHHHHHHHhCCC
Q 030234 46 KGFILDGFPR-TEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 95 (181)
Q Consensus 46 ~G~iLdGfPr-t~~Qa~~l~~~l~~~~~~p~~vi~L~~~~~~~~~Rl~~r~ 95 (181)
..+|+|+-.- .......+.+.+. ..+-.+|+|++|.+++.+|+..|.
T Consensus 87 ~~vi~~~~~~~~~~~~~~~~~~~~---~~~~~~v~l~~~~e~l~~R~~~r~ 134 (178)
T 1qhx_A 87 ARIIIDDVFLGGAAAQERWRSFVG---DLDVLWVGVRCDGAVAEGRETARG 134 (178)
T ss_dssp CEEEEEECCTTTHHHHHHHHHHHT---TCCEEEEEEECCHHHHHHHHHHTS
T ss_pred CeEEEEeccccChHHHHHHHHHhc---CCcEEEEEEECCHHHHHHHHHhhC
Confidence 3589998542 2222222222221 234468889999999999998774
No 93
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=89.75 E-value=0.79 Score=39.13 Aligned_cols=96 Identities=17% Similarity=0.207 Sum_probs=58.6
Q ss_pred HHHHHHHHHHhcCCCccEEEEeecChHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCCCcccCCCCcHHHHHHH
Q 030234 59 QAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSR 138 (181)
Q Consensus 59 Qa~~l~~~l~~~~~~p~~vi~L~~~~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~~r~dd~~~~i~~R 138 (181)
+...||.+|...|. |.+.++|++|.++-.+|+..|..+|.+.= .--+.|-. -..+
T Consensus 391 ~i~~FE~~L~~~g~-~i~Kf~L~is~eeQ~~R~~~R~~~p~k~W----------------------k~s~~D~~--~~~~ 445 (500)
T 3czp_A 391 EINDFEEQLSEYGI-IVVKFWLAIDKQTQMERFKEREKTPYKRY----------------------KITEEDWR--NRDK 445 (500)
T ss_dssp HHHHHHHHHHHHTE-EEEEEEEECCHHHHHHHHHHHHHSSCTTS----------------------CCCSSTTT--GGGG
T ss_pred HHHHHHHHHhhCCC-eEEEEEEECCHHHHHHHHHHHhcCCcccC----------------------CCCHHHHH--HHHh
Confidence 55666666776664 77999999999999999999987765310 00011100 0122
Q ss_pred HHHHHHhcHHHHHHHhhc-CCEEEEeCCC---ChHHHHHHHHHHh
Q 030234 139 LEAFHKQTEPVIDYYSKK-GIVAQLHAEK---PPQEVTSEVQKAL 179 (181)
Q Consensus 139 l~~y~~~~~~l~~~y~~~-~~l~~Ida~~---~~~~v~~~i~~~l 179 (181)
...|.+....+...-... -.++.|+|+. ..-.|.+.|.+.|
T Consensus 446 w~~y~~a~~~~l~~T~t~~APW~vI~a~dk~~arl~v~~~i~~~l 490 (500)
T 3czp_A 446 WDQYVDAVGDMVDRTSTEIAPWTLVEANDKRFARVKVLRTINDAI 490 (500)
T ss_dssp HHHHHHHHHHHHHHHCCSSSCEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCCEEEEECCCccchHHHHHHHHHHHH
Confidence 344555555444443322 3699999997 3355666666554
No 94
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=88.58 E-value=0.57 Score=33.92 Aligned_cols=54 Identities=15% Similarity=0.076 Sum_probs=16.9
Q ss_pred CcccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCCEEEEeCCCChHHHHHHHHHHhcC
Q 030234 123 PLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALSA 181 (181)
Q Consensus 123 ~l~~r~dd~~~~i~~Rl~~y~~~~~~l~~~y~~~~~l~~Ida~~~~~~v~~~i~~~l~~ 181 (181)
||..|..++++.+++||......... .+...--++.+|. +.++.++++.++|.+
T Consensus 131 Rl~~Rg~~~~~~i~~rl~~~~~~~~~---~~~~~~d~vi~nd--~~~~a~~~l~~~i~~ 184 (186)
T 3a00_A 131 RLEGRGTETEESINKRLSAAQAELAY---AETGAHDKVIVND--DLDKAYKELKDFIFA 184 (186)
T ss_dssp -------------------------------CCCCSEEEECS--SHHHHHHHHHHHHTT
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHh---hcccCCcEEEECc--CHHHHHHHHHHHHHh
Confidence 45556566778899999877654321 2212112455554 789999999988864
No 95
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=85.33 E-value=3.8 Score=30.15 Aligned_cols=73 Identities=11% Similarity=0.074 Sum_probs=44.1
Q ss_pred cEEEEeecChHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHHhcHHHHHHHh
Q 030234 75 DKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYS 154 (181)
Q Consensus 75 ~~vi~L~~~~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~~r~dd~~~~i~~Rl~~y~~~~~~l~~~y~ 154 (181)
.++|+|.+|.++..+|+..+. | + +.+.+.+++..-.+.-.+.-++|.
T Consensus 118 ~~~V~L~A~~e~r~~R~~~~~-----~-------------------------~---~~~~~~~~i~~~d~~R~~~y~~~~ 164 (201)
T 3fdi_A 118 MISAFILGDKDTKTKRVMERE-----G-------------------------V---DEKTALNMMKKMDKMRKVYHNFYC 164 (201)
T ss_dssp EEEEEEEECHHHHHHHHHHHH-----T-------------------------C---CHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred eEEEEEECCHHHHHHHHHHHh-----C-------------------------C---CHHHHHHHHHHHHHHHHHHHHHHh
Confidence 379999999999999997542 1 1 123344444333333333323331
Q ss_pred h------cCCEEEEeCC-CChHHHHHHHHHHhc
Q 030234 155 K------KGIVAQLHAE-KPPQEVTSEVQKALS 180 (181)
Q Consensus 155 ~------~~~l~~Ida~-~~~~~v~~~i~~~l~ 180 (181)
. ..-=+.||.+ .+++++.+.|.+.++
T Consensus 165 ~~~~~~~~~~dl~Idt~~l~~eevv~~I~~~i~ 197 (201)
T 3fdi_A 165 ESKWGDSRTYDICIKIGKVDVDTATDMIIKYID 197 (201)
T ss_dssp SSCTTBGGGCSEEEEESSSCHHHHHHHHHHHHH
T ss_pred CCCCCCcccCCEEEECCCCCHHHHHHHHHHHHH
Confidence 1 1122578866 499999999998775
No 96
>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A
Probab=85.15 E-value=10 Score=29.69 Aligned_cols=111 Identities=13% Similarity=0.050 Sum_probs=64.7
Q ss_pred HHHHHHHHCCCCC------------CHHHHHHHHHHHHcCCCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCccEEEEee
Q 030234 14 IKAKEAMDKGELV------------SDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFA 81 (181)
Q Consensus 14 ~~i~~~l~~G~~v------------pd~~v~~ll~~~l~~~~~~~G~iLdGfPrt~~Qa~~l~~~l~~~~~~p~~vi~L~ 81 (181)
..+++.+.+|..+ |-+-|.+++.. .+-.|||.=+..+.|+.. ....| .+|++.
T Consensus 158 eef~~~i~~g~flE~~~~~g~~YGt~~~~V~~~~~~-------G~~vildid~~g~~~l~~-------~~~~p-i~IfI~ 222 (295)
T 1kjw_A 158 EKMEKDIQAHKFIEAGQYNSHLYGTSVQSVREVAEQ-------GKHCILDVSANAVRRLQA-------AHLHP-IAIFIR 222 (295)
T ss_dssp HHHHHHHHTTCEEEEEEETTEEEEEEHHHHHHHHHT-------TCEEEECCCTTHHHHHHH-------TTCCC-EEEEEC
T ss_pred HHHHHHHHCCCcEEEEEEcCcEeeeeHHHHHHHHhc-------CCeEEEEeCHHHHHHHHh-------cccCC-eEEEEE
Confidence 3556666667665 44444444431 256889987765555442 23456 788888
Q ss_pred cChHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCCEEE
Q 030234 82 IDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQ 161 (181)
Q Consensus 82 ~~~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~~r~dd~~~~i~~Rl~~y~~~~~~l~~~y~~~~~l~~ 161 (181)
.|.-..++++.+|. +.+.+++||....+. ..-|...--++.
T Consensus 223 pps~~~L~~L~~R~-----------------------------------t~~~i~~rl~~a~~~----e~~~~~~fd~vi 263 (295)
T 1kjw_A 223 PRSLENVLEINKRI-----------------------------------TEEQARKAFDRATKL----EQEFTECFSAIV 263 (295)
T ss_dssp CSSHHHHHHHCTTS-----------------------------------CHHHHHHHHHHHHHH----HHHHGGGCSEEE
T ss_pred CCCHHHHHHHHhcC-----------------------------------CHHHHHHHHHHHHHH----HHhccccCeEEE
Confidence 87655555565443 125688898876431 111222212333
Q ss_pred EeCCCChHHHHHHHHHHhc
Q 030234 162 LHAEKPPQEVTSEVQKALS 180 (181)
Q Consensus 162 Ida~~~~~~v~~~i~~~l~ 180 (181)
+| .+.++.+.++.++|.
T Consensus 264 vN--d~le~a~~~l~~ii~ 280 (295)
T 1kjw_A 264 EG--DSFEEIYHKVKRVIE 280 (295)
T ss_dssp CC--SSHHHHHHHHHHHHH
T ss_pred EC--cCHHHHHHHHHHHHH
Confidence 43 389999999988774
No 97
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=84.70 E-value=1.8 Score=34.97 Aligned_cols=47 Identities=13% Similarity=0.205 Sum_probs=32.4
Q ss_pred eEecCCCCCHH--HHH-----------HHHHHHHh--cCCCccEEEEeecChHHHHHHHhCC
Q 030234 48 FILDGFPRTEV--QAQ-----------KLDEMLEK--QGKKVDKVLNFAIDDAVLEERITGR 94 (181)
Q Consensus 48 ~iLdGfPrt~~--Qa~-----------~l~~~l~~--~~~~p~~vi~L~~~~~~~~~Rl~~r 94 (181)
+|.|-|+-... |.. .+..+... .+..||++|+|++|.+++++|+.+|
T Consensus 117 VI~DR~~~Ss~a~f~~~~yq~g~l~~~~i~~l~~~~~~~~~PDLtIyLd~~pe~~l~RI~~R 178 (334)
T 1p6x_A 117 LVFDRHPVASTVCFPAARYLLGDMSMCALMAMVATLPREPQGGNIVVTTLNVEEHIRRLRTR 178 (334)
T ss_dssp EEEESCTHHHHTHHHHHHHHTTSSCHHHHHHHHTTCCCCCTTEEEEEEECCHHHHHHHHHHH
T ss_pred EEEeCChHHHHHHHHHHHHhcCCCCHHHHHHHHHHccCCCCCCEEEEEECCHHHHHHHHHhc
Confidence 89999997422 222 12222211 1357999999999999999999766
No 98
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=84.54 E-value=1.3 Score=38.05 Aligned_cols=44 Identities=14% Similarity=0.017 Sum_probs=27.2
Q ss_pred CCCeEecCCCCCHHHHHHHHHHHHhcCCCcc-EEEEeecChHHHHHHHh
Q 030234 45 QKGFILDGFPRTEVQAQKLDEMLEKQGKKVD-KVLNFAIDDAVLEERIT 92 (181)
Q Consensus 45 ~~G~iLdGfPrt~~Qa~~l~~~l~~~~~~p~-~vi~L~~~~~~~~~Rl~ 92 (181)
..++|+|+-.-.......+.+.+ ..++ .+|+|++|.+++.+|+.
T Consensus 444 G~~VI~d~~~~~~~~r~~~~~~l----~~~d~~vV~L~~~~e~~~~Rl~ 488 (546)
T 2gks_A 444 NGVVICALVSPYRSARNQVRNMM----EEGKFIEVFVDAPVEVCEERDV 488 (546)
T ss_dssp TCEEEEECCCCCHHHHHHHHTTS----CTTCEEEEEEECCGGGHHHHCC
T ss_pred CCEEEEEcCCCCHHHHHHHHHHh----hcCCEEEEEEeCCHHHHHHHhh
Confidence 35799996332222222222111 1256 89999999999999975
No 99
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=83.29 E-value=6.1 Score=29.69 Aligned_cols=73 Identities=11% Similarity=0.090 Sum_probs=45.7
Q ss_pred cEEEEeecChHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHHhcHHHHHHHh
Q 030234 75 DKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYS 154 (181)
Q Consensus 75 ~~vi~L~~~~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~~r~dd~~~~i~~Rl~~y~~~~~~l~~~y~ 154 (181)
.++|+|.+|.++..+|+..+. | ++ .+...+++..-.+.-.+.-++|.
T Consensus 138 ~~~VfL~A~~e~r~~Ri~~~~-----~-------------------------~~---~~~a~~~I~~~d~~R~~~Y~~yt 184 (223)
T 3hdt_A 138 LIRIFVYTDKVKKVQRVMEVD-----C-------------------------ID---EERAKRRIKKIEKERKEYYKYFT 184 (223)
T ss_dssp EEEEEEECCHHHHHHHHHHHH-----T-------------------------CC---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEECCHHHHHHHHHHhc-----C-------------------------CC---HHHHHHHHHHHHHHHHHHHHHHc
Confidence 379999999999999997642 1 11 23344445443334444444332
Q ss_pred h------cCCEEEEeCC-CChHHHHHHHHHHhc
Q 030234 155 K------KGIVAQLHAE-KPPQEVTSEVQKALS 180 (181)
Q Consensus 155 ~------~~~l~~Ida~-~~~~~v~~~i~~~l~ 180 (181)
. ...=+.||.+ .+++++.+.|.+.++
T Consensus 185 g~~~~~~~~~dl~IdT~~l~~eevv~~I~~~i~ 217 (223)
T 3hdt_A 185 GSEWHSMKNYDLPINTTKLTLEETAELIKAYIR 217 (223)
T ss_dssp SSCTTCGGGCSEEEECTTCCHHHHHHHHHHHHH
T ss_pred CCCCCCcccCeEEEECCCCCHHHHHHHHHHHHH
Confidence 1 1123578866 599999999988764
No 100
>3rhf_A Putative polyphosphate kinase 2 family protein; PSI-biology, MCSG, structural genomics, midwest center for S genomics; HET: PGE FLC PG4; 2.45A {Arthrobacter aurescens}
Probab=80.84 E-value=5 Score=31.69 Aligned_cols=97 Identities=15% Similarity=0.121 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHhcCCCccEEEEeecChHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCCCcccCCCCcHHHH-
Q 030234 57 EVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVL- 135 (181)
Q Consensus 57 ~~Qa~~l~~~l~~~~~~p~~vi~L~~~~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~~r~dd~~~~i- 135 (181)
..|...||.+|...|+. -+=+.|++|.+.-.+|+..|.-+|.+. + .-++.-+
T Consensus 164 ~~~I~~FE~~L~~~G~~-ilKf~LhIskeEQ~kR~~~R~~dP~k~----------------------W----K~s~~D~~ 216 (289)
T 3rhf_A 164 YAAINDFESRLTEQGTT-IVKVMLNISKDEQKKRLIARLDDPSKH----------------------W----KYSRGDLA 216 (289)
T ss_dssp HHHHHHHHHHHHHTTEE-EEEEEEECCHHHHHHHHHHHHHCGGGG----------------------G----GCCHHHHH
T ss_pred HHHHHHHHHHHHhCCCE-EEEEEEECCHHHHHHHHHHHhcCCccc----------------------c----cCCHHHHH
Confidence 34677888888777654 467999999999999999988666431 1 0112222
Q ss_pred -HHHHHHHHHhcHHHHHHHhh-cCCEEEEeCCCChHH---HHHHHHHHhc
Q 030234 136 -KSRLEAFHKQTEPVIDYYSK-KGIVAQLHAEKPPQE---VTSEVQKALS 180 (181)
Q Consensus 136 -~~Rl~~y~~~~~~l~~~y~~-~~~l~~Ida~~~~~~---v~~~i~~~l~ 180 (181)
.++...|.+....++..-.. .-.++.|+|+...-- |.+.|.+.|+
T Consensus 217 ~r~~wd~Y~~a~e~ml~~T~t~~APW~VV~addK~~arl~v~~~ll~~Le 266 (289)
T 3rhf_A 217 ERAYWDDYMDAYSVAFEKTSTEIAPWHVVPANKKWYARIAVQQLLLDALG 266 (289)
T ss_dssp HHTTHHHHHHHHHHHHHHHCCSSSCEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCCCHHHHHHHHHHHHHHHHH
Confidence 23346666666655555432 247999999866443 4555555443
No 101
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=78.29 E-value=7.7 Score=34.04 Aligned_cols=21 Identities=14% Similarity=-0.225 Sum_probs=18.7
Q ss_pred CccEEEEeecChHHHHHHHhC
Q 030234 73 KVDKVLNFAIDDAVLEERITG 93 (181)
Q Consensus 73 ~p~~vi~L~~~~~~~~~Rl~~ 93 (181)
.|..+|+|++|.+++.+|+..
T Consensus 151 ~p~~vV~Ldap~Evl~~Rl~r 171 (630)
T 1x6v_B 151 LPFFEVFVDAPLHVCEQRDVK 171 (630)
T ss_dssp CCEEEEEEECCHHHHHHHCTT
T ss_pred CCeEEEEEECCHHHHHHHhcc
Confidence 578999999999999999863
No 102
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=77.60 E-value=3.5 Score=30.63 Aligned_cols=44 Identities=14% Similarity=0.160 Sum_probs=21.3
Q ss_pred CcHHHHHHHHHHHHHhcHHHHHHHhhcCCEEEEeCCCChHHHHHHHHHHhc
Q 030234 130 DTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 180 (181)
Q Consensus 130 d~~~~i~~Rl~~y~~~~~~l~~~y~~~~~l~~Ida~~~~~~v~~~i~~~l~ 180 (181)
++++.+.+|+....... +++... -++.++. +.+++++++.++|.
T Consensus 164 ~~~~~i~~rl~~~~~~~----~~~~~~-d~vI~n~--~~e~~~~~l~~~i~ 207 (231)
T 3lnc_A 164 DDSEVVEARLKGAAFEI----SHCEAY-DYVIVNE--DIEETADRISNILR 207 (231)
T ss_dssp --------CHHHHHHHH----TTGGGS-SEEEECS--SHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH----hhhcCC-eEEEECc--CHHHHHHHHHHHHH
Confidence 34566777777655432 222222 3444443 79999999988764
No 103
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=73.81 E-value=25 Score=26.06 Aligned_cols=45 Identities=9% Similarity=0.170 Sum_probs=29.1
Q ss_pred CCcHHHHHHHHHHHHHhcHHHHHHHhhcCCEEEEeCCCChHHHHHHHHHHhc
Q 030234 129 DDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 180 (181)
Q Consensus 129 dd~~~~i~~Rl~~y~~~~~~l~~~y~~~~~l~~Ida~~~~~~v~~~i~~~l~ 180 (181)
.++++.+.+|+........ ++... -++.+| .+.++.+.++.++|.
T Consensus 152 ~~~~e~i~~rl~~a~~e~~----~~~~~-d~~i~N--d~l~~a~~~l~~ii~ 196 (219)
T 1s96_A 152 QDSEEVIAKRMAQAVAEMS----HYAEY-DYLIVN--DDFDTALTDLKTIIR 196 (219)
T ss_dssp CSCHHHHHHHHHHHHHHHT----TGGGS-SEEEEC--SSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHh----hccCC-CEEEEC--cCHHHHHHHHHHHHH
Confidence 3567889999986654332 22221 345555 478899999888774
No 104
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}
Probab=71.63 E-value=35 Score=30.19 Aligned_cols=86 Identities=13% Similarity=0.099 Sum_probs=48.9
Q ss_pred CCeEecCCCCCHHHHHHHHHHHHhcCCCccEEEEeecChHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCCCcc
Q 030234 46 KGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLI 125 (181)
Q Consensus 46 ~G~iLdGfPrt~~Qa~~l~~~l~~~~~~p~~vi~L~~~~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~ 125 (181)
+-.|||.=|..+.|++ .....| ++|++..|.-..++++.+|.
T Consensus 621 ~~~ildi~~~~~~~l~-------~~~~~p-~~ifi~pps~~~L~~l~~R~------------------------------ 662 (721)
T 2xkx_A 621 KHCILDVSANAVRRLQ-------AAHLHP-IAIFIRPRSLENVLEINKRI------------------------------ 662 (721)
T ss_pred CcEEEeCCHHHHHHHH-------hcccCC-EEEEEeCCcHHHHHHHhccC------------------------------
Confidence 5678887443333332 123456 78888877655555665543
Q ss_pred cCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCCEEEEeCCCChHHHHHHHHHHhc
Q 030234 126 QRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 180 (181)
Q Consensus 126 ~r~dd~~~~i~~Rl~~y~~~~~~l~~~y~~~~~l~~Ida~~~~~~v~~~i~~~l~ 180 (181)
+.+.+++||....+.-..-..+| -++ |+-+ +.++.++++.++|.
T Consensus 663 -----t~~~~~~rl~~a~~~e~~~~~~f----d~v-i~Nd-~l~~a~~~l~~~i~ 706 (721)
T 2xkx_A 663 -----TEEQARKAFDRATKLEQEFTECF----SAI-VEGD-SFEEIYHKVKRVIE 706 (721)
T ss_pred -----CHHHHHHHHHHHHHHHHhccccC----cEE-EECc-CHHHHHHHHHHHHH
Confidence 12457888887643211111122 233 4333 88999999988875
No 105
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=70.93 E-value=2.1 Score=24.18 Aligned_cols=31 Identities=16% Similarity=0.201 Sum_probs=22.2
Q ss_pred CCCcCCCCCCccccC------CCCCCCCCCCCCCCCC
Q 030234 93 GRWIHPSSGRTYHTK------FAPPKVPGVDDVTGEP 123 (181)
Q Consensus 93 ~r~~~~~tg~~y~~~------~~pp~~~~~~~~~~~~ 123 (181)
.+.+|+.||-+|... |...++...|+.||..
T Consensus 3 ~~y~C~vCGyvyd~~~Gd~t~f~~lP~dw~CP~Cg~~ 39 (46)
T 6rxn_A 3 QKYVCNVCGYEYDPAEHDNVPFDQLPDDWCCPVCGVS 39 (46)
T ss_dssp CCEEETTTCCEECGGGGTTCCGGGSCTTCBCTTTCCB
T ss_pred CEEECCCCCeEEeCCcCCCcchhhCCCCCcCcCCCCc
Confidence 457899999999843 3344556789999853
No 106
>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1
Probab=69.95 E-value=8.8 Score=30.95 Aligned_cols=24 Identities=8% Similarity=0.058 Sum_probs=20.3
Q ss_pred CCCccEEEEeecChHHHHHHHhCC
Q 030234 71 GKKVDKVLNFAIDDAVLEERITGR 94 (181)
Q Consensus 71 ~~~p~~vi~L~~~~~~~~~Rl~~r 94 (181)
+..||.+|+|+++.+++++|+.+|
T Consensus 164 ~~~PDltI~Ld~~pe~~l~RI~~R 187 (341)
T 1osn_A 164 EPPGTNLVVCTVSLPSHLSRVSKR 187 (341)
T ss_dssp CCSCCEEEEEECCHHHHHHHCC--
T ss_pred CCCCCeEEEEeCCHHHHHHHHHhh
Confidence 457999999999999999999766
No 107
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=63.97 E-value=19 Score=25.75 Aligned_cols=17 Identities=18% Similarity=-0.040 Sum_probs=15.0
Q ss_pred cEEEEeecChHHHHHHH
Q 030234 75 DKVLNFAIDDAVLEERI 91 (181)
Q Consensus 75 ~~vi~L~~~~~~~~~Rl 91 (181)
-.+|+|++|.+++.+|+
T Consensus 124 ~~~v~L~a~~e~~~~R~ 140 (200)
T 3uie_A 124 FVEVFMDVPLSVCEARD 140 (200)
T ss_dssp EEEEEECCCHHHHHHHC
T ss_pred EEEEEEeCCHHHHHHhc
Confidence 35799999999999997
No 108
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Probab=63.53 E-value=20 Score=28.71 Aligned_cols=50 Identities=16% Similarity=0.117 Sum_probs=32.2
Q ss_pred CCeEecCCCCCH---HHH----------HHHHHHHHhc--CCCccEEEEeecChHHHHHHHhCCC
Q 030234 46 KGFILDGFPRTE---VQA----------QKLDEMLEKQ--GKKVDKVLNFAIDDAVLEERITGRW 95 (181)
Q Consensus 46 ~G~iLdGfPrt~---~Qa----------~~l~~~l~~~--~~~p~~vi~L~~~~~~~~~Rl~~r~ 95 (181)
+.+|.|-|+-.. -|. ..+..+.... +..|++++++++|.+++++|+.+|.
T Consensus 112 ~~VI~DR~~~Ss~~~yq~~~~~~g~l~~~~~~~l~~~~~~~~ppdlt~lldl~pe~~l~RI~~Rg 176 (331)
T 1e2k_A 112 LTLIFDRHPIAALLCYPAARYLMGSMTPQAVLAFVALIPPTLPGTNIVLGALPEDRHIDRLAKRQ 176 (331)
T ss_dssp EEEEEECCHHHHHTHHHHHHHHTTSSCHHHHHHHHHTCCCCCTTCEEEEEECCHHHHHHHHHHSC
T ss_pred CEEEEecCchHhHHHHHHHHHhcCCCCHHHHHHHHHhcccCCCCeEEEEEcCCHHHHHHHHHhcC
Confidence 347999999743 232 1122222111 2456889999999999999998763
No 109
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=62.01 E-value=3.6 Score=29.84 Aligned_cols=25 Identities=32% Similarity=0.441 Sum_probs=18.8
Q ss_pred CCcCCCCCCccccCCCCCCCCCCCCCCCCC
Q 030234 94 RWIHPSSGRTYHTKFAPPKVPGVDDVTGEP 123 (181)
Q Consensus 94 r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~ 123 (181)
.++|+.||-+|.. .+ +.+|+.||.+
T Consensus 138 ~~~C~~CG~i~~~--~~---p~~CP~Cg~~ 162 (170)
T 3pwf_A 138 VYICPICGYTAVD--EA---PEYCPVCGAP 162 (170)
T ss_dssp EEECTTTCCEEES--CC---CSBCTTTCCB
T ss_pred eeEeCCCCCeeCC--CC---CCCCCCCCCC
Confidence 5889999999983 23 3489999953
No 110
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=60.16 E-value=24 Score=28.81 Aligned_cols=24 Identities=13% Similarity=0.051 Sum_probs=20.1
Q ss_pred CCccEEEEeecChHHHHHHHhCCC
Q 030234 72 KKVDKVLNFAIDDAVLEERITGRW 95 (181)
Q Consensus 72 ~~p~~vi~L~~~~~~~~~Rl~~r~ 95 (181)
..|++++++++|.+++++|+.+|.
T Consensus 198 ~ppdlt~Lldl~pe~~l~RI~~Rg 221 (376)
T 1of1_A 198 LPGTNIVLGALPEDRHIDRLAKRQ 221 (376)
T ss_dssp CTTCEEEEEECCHHHHHHHHHHSC
T ss_pred CCCeEEEEecCCHHHHHHHHHhcC
Confidence 356788889999999999998663
No 111
>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC, cell junction, cell membrane, membrane, SH3 domain; 2.80A {Homo sapiens}
Probab=55.85 E-value=15 Score=29.24 Aligned_cols=17 Identities=12% Similarity=0.186 Sum_probs=11.5
Q ss_pred EeCCCChHHHHHHHHHHhc
Q 030234 162 LHAEKPPQEVTSEVQKALS 180 (181)
Q Consensus 162 Ida~~~~~~v~~~i~~~l~ 180 (181)
|| .+.++.+.++.++|.
T Consensus 272 VN--Ddle~A~~~L~~iI~ 288 (308)
T 3kfv_A 272 LN--GTSDTWYQELKAIIR 288 (308)
T ss_dssp EC--SSSTHHHHHHHHHHH
T ss_pred cC--CCHHHHHHHHHHHHH
Confidence 55 446777888877764
No 112
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=53.67 E-value=13 Score=21.28 Aligned_cols=30 Identities=13% Similarity=0.081 Sum_probs=20.0
Q ss_pred CCCcCCCCCCccccCCCC-------------CCCCCCCCCCCC
Q 030234 93 GRWIHPSSGRTYHTKFAP-------------PKVPGVDDVTGE 122 (181)
Q Consensus 93 ~r~~~~~tg~~y~~~~~p-------------p~~~~~~~~~~~ 122 (181)
.+..|..||-+|....-. -++...|+.||.
T Consensus 2 ~~y~C~~CGyvYd~~~Gdp~~gi~pGt~f~~lP~dw~CP~Cg~ 44 (52)
T 1e8j_A 2 DIYVCTVCGYEYDPAKGDPDSGIKPGTKFEDLPDDWACPVCGA 44 (52)
T ss_dssp CCEECSSSCCCCCTTTCCTTTTCCSSCCTTSSCTTCCCSSSCC
T ss_pred CcEEeCCCCeEEcCCcCCcccCcCCCCchHHCCCCCcCCCCCC
Confidence 356788999999854321 234457888885
No 113
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=52.71 E-value=7.7 Score=24.57 Aligned_cols=30 Identities=10% Similarity=-0.066 Sum_probs=21.8
Q ss_pred CCCcCCCCCCccccCC-------------CCCCCCCCCCCCCC
Q 030234 93 GRWIHPSSGRTYHTKF-------------APPKVPGVDDVTGE 122 (181)
Q Consensus 93 ~r~~~~~tg~~y~~~~-------------~pp~~~~~~~~~~~ 122 (181)
.+.+|+.||-+|.... ...++..+|+.||.
T Consensus 26 ~~y~C~vCGyvYD~~~Gdp~~gI~pGT~fedlPddW~CPvCga 68 (81)
T 2kn9_A 26 KLFRCIQCGFEYDEALGWPEDGIAAGTRWDDIPDDWSCPDCGA 68 (81)
T ss_dssp CEEEETTTCCEEETTTCBTTTTBCTTCCTTTSCTTCCCTTTCC
T ss_pred ceEEeCCCCEEEcCCcCCcccCcCCCCChhHCCCCCcCCCCCC
Confidence 4688999999998642 22344568999985
No 114
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=51.52 E-value=13 Score=27.73 Aligned_cols=41 Identities=15% Similarity=0.027 Sum_probs=25.3
Q ss_pred CCeEecCCCCCHHHHHHHHHHHHhcCCCccEEEEeecChHHHHHHHhCCC
Q 030234 46 KGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 95 (181)
Q Consensus 46 ~G~iLdGfPrt~~Qa~~l~~~l~~~~~~p~~vi~L~~~~~~~~~Rl~~r~ 95 (181)
..+|+|| |-...+.. + .. ..+.+|++.++++.-+.|...|.
T Consensus 135 ~~lilDg-~~~~~~~~-l----~~---~~~~~i~v~th~~~~~~r~~~r~ 175 (245)
T 2jeo_A 135 DVVLFEG-ILVFYSQE-I----RD---MFHLRLFVDTDSDVRLSRRVLRD 175 (245)
T ss_dssp SEEEEEC-TTTTTSHH-H----HT---TCSEEEEEECCHHHHHHHHHHHH
T ss_pred CEEEEeC-ccccccHH-H----HH---hcCeEEEEECCHHHHHHHHHHHH
Confidence 4789999 43221222 1 11 14789999999877666665554
No 115
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=50.33 E-value=6.8 Score=29.13 Aligned_cols=25 Identities=12% Similarity=-0.005 Sum_probs=19.7
Q ss_pred CCcCCCCCCccccCCCCCCCCCCCCCCCCC
Q 030234 94 RWIHPSSGRTYHTKFAPPKVPGVDDVTGEP 123 (181)
Q Consensus 94 r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~ 123 (181)
.++|+.||.+|.. .+| +.|+.||.+
T Consensus 171 ~~~C~~CG~i~~g--~~p---~~CP~C~~~ 195 (202)
T 1yuz_A 171 FHLCPICGYIHKG--EDF---EKCPICFRP 195 (202)
T ss_dssp EEECSSSCCEEES--SCC---SBCTTTCCB
T ss_pred EEEECCCCCEEcC--cCC---CCCCCCCCC
Confidence 5799999999874 344 789999853
No 116
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=49.06 E-value=9.7 Score=32.87 Aligned_cols=18 Identities=11% Similarity=-0.164 Sum_probs=16.2
Q ss_pred ccEEEEeecChHHHHHHH
Q 030234 74 VDKVLNFAIDDAVLEERI 91 (181)
Q Consensus 74 p~~vi~L~~~~~~~~~Rl 91 (181)
+..+|+|++|.+++.+|.
T Consensus 496 ~~~~V~Lda~~ev~~~R~ 513 (573)
T 1m8p_A 496 SFFLVHVATPLEHCEQSD 513 (573)
T ss_dssp EEEEEEECCCHHHHHHHC
T ss_pred CeEEEEEeCCHHHHHHHh
Confidence 568999999999999995
No 117
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=47.22 E-value=6.2 Score=25.38 Aligned_cols=31 Identities=19% Similarity=0.232 Sum_probs=22.3
Q ss_pred hCCCcCCCCCCccccC-------------CCCCCCCCCCCCCCC
Q 030234 92 TGRWIHPSSGRTYHTK-------------FAPPKVPGVDDVTGE 122 (181)
Q Consensus 92 ~~r~~~~~tg~~y~~~-------------~~pp~~~~~~~~~~~ 122 (181)
..+.+|..||-+|... |...++...|+.||.
T Consensus 33 m~~y~C~vCGyvYD~~~Gdp~~gI~pGT~fedlPddW~CPvCga 76 (87)
T 1s24_A 33 YLKWICITCGHIYDEALGDEAEGFTPGTRFEDIPDDWCCPDCGA 76 (87)
T ss_dssp CCEEEETTTTEEEETTSCCTTTTCCSCCCGGGCCTTCCCSSSCC
T ss_pred CceEECCCCCeEecCCcCCcccCcCCCCChhHCCCCCCCCCCCC
Confidence 4578999999999864 222344568999885
No 118
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=47.12 E-value=55 Score=22.83 Aligned_cols=50 Identities=14% Similarity=0.061 Sum_probs=30.8
Q ss_pred CCeEecCCCCCHHHHHHHHHHHHhcCCC-ccEEEEeecChHHHHHHHhCCCc
Q 030234 46 KGFILDGFPRTEVQAQKLDEMLEKQGKK-VDKVLNFAIDDAVLEERITGRWI 96 (181)
Q Consensus 46 ~G~iLdGfPrt~~Qa~~l~~~l~~~~~~-p~~vi~L~~~~~~~~~Rl~~r~~ 96 (181)
..+|+|++ ......+.+.+.+.+.+.. .-.+++|.++.+.+.+|...|..
T Consensus 74 ~~~ild~~-~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~ 124 (189)
T 2bdt_A 74 NDVVLDYI-AFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKK 124 (189)
T ss_dssp CEEEEESC-CCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC
T ss_pred CcEEEeec-cCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccc
Confidence 46899995 2333333333333222222 33568899999999999988754
No 119
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=47.09 E-value=9.3 Score=23.42 Aligned_cols=30 Identities=10% Similarity=0.074 Sum_probs=21.0
Q ss_pred CCCcCCCCCCccccCC-------------CCCCCCCCCCCCCC
Q 030234 93 GRWIHPSSGRTYHTKF-------------APPKVPGVDDVTGE 122 (181)
Q Consensus 93 ~r~~~~~tg~~y~~~~-------------~pp~~~~~~~~~~~ 122 (181)
.+.+|..||-+|.... ...++...|+.|+.
T Consensus 6 ~~y~C~vCGyiYd~~~Gdp~~gi~pGT~f~~lPddw~CP~Cga 48 (70)
T 1dx8_A 6 GKYECEACGYIYEPEKGDKFAGIPPGTPFVDLSDSFMCPACRS 48 (70)
T ss_dssp SCEEETTTCCEECTTTCCTTTTCCSSCCGGGSCTTCBCTTTCC
T ss_pred ceEEeCCCCEEEcCCCCCcccCcCCCCchhhCCCCCcCCCCCC
Confidence 4678999999998643 22334568888885
No 120
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=43.91 E-value=11 Score=21.82 Aligned_cols=31 Identities=13% Similarity=0.047 Sum_probs=20.7
Q ss_pred CCCcCCCCCCccccCC-------------CCCCCCCCCCCCCCC
Q 030234 93 GRWIHPSSGRTYHTKF-------------APPKVPGVDDVTGEP 123 (181)
Q Consensus 93 ~r~~~~~tg~~y~~~~-------------~pp~~~~~~~~~~~~ 123 (181)
.+.+|+.||-+|.... ..-++..+|+.||..
T Consensus 2 ~~y~C~vCGyvYd~~~Gdp~~gi~pGt~fe~lP~dw~CP~Cg~~ 45 (54)
T 4rxn_A 2 KKYTCTVCGYIYDPEDGDPDDGVNPGTDFKDIPDDWVCPLCGVG 45 (54)
T ss_dssp CCEEETTTCCEECTTTCBGGGTBCTTCCGGGSCTTCBCTTTCCB
T ss_pred CceECCCCCeEECCCcCCcccCcCCCCChhHCCCCCcCcCCCCc
Confidence 3567889999998642 112345688888863
No 121
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=43.88 E-value=9 Score=27.71 Aligned_cols=22 Identities=14% Similarity=0.043 Sum_probs=9.7
Q ss_pred CccEEEEeecChHHHHHHHhCC
Q 030234 73 KVDKVLNFAIDDAVLEERITGR 94 (181)
Q Consensus 73 ~p~~vi~L~~~~~~~~~Rl~~r 94 (181)
..|.+|++++|.++.++|+..|
T Consensus 143 ~~d~~i~v~~~~~~~~~R~~~R 164 (201)
T 1rz3_A 143 FFDFVVYLDCPREIRFARENDQ 164 (201)
T ss_dssp GCSEEEEECCC-----------
T ss_pred hcCEEEEEeCCHHHHHHHHhcC
Confidence 3689999999999999988766
No 122
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=41.61 E-value=7 Score=28.70 Aligned_cols=26 Identities=15% Similarity=0.397 Sum_probs=19.3
Q ss_pred CCcCCCCCCccccCCCCCCCCCCCCCCCCC
Q 030234 94 RWIHPSSGRTYHTKFAPPKVPGVDDVTGEP 123 (181)
Q Consensus 94 r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~ 123 (181)
.++|+.||.+|... .+|. .|+.||.+
T Consensus 155 ~~~C~~CG~~~~g~-~~p~---~CP~C~~~ 180 (191)
T 1lko_A 155 KWRCRNCGYVHEGT-GAPE---LCPACAHP 180 (191)
T ss_dssp EEEETTTCCEEEEE-ECCS---BCTTTCCB
T ss_pred eEEECCCCCEeeCC-CCCC---CCCCCcCC
Confidence 57899999998733 3443 89999964
No 123
>3mb2_B 4-oxalocrotonate tautomerase family enzyme - beta; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, hydrolase; 2.41A {Chloroflexus aurantiacus}
Probab=41.56 E-value=49 Score=20.22 Aligned_cols=38 Identities=8% Similarity=0.043 Sum_probs=26.1
Q ss_pred CCCCCHHHHHHHHHHHH-----hcCCCccE--EEEeecChHHHHH
Q 030234 52 GFPRTEVQAQKLDEMLE-----KQGKKVDK--VLNFAIDDAVLEE 89 (181)
Q Consensus 52 GfPrt~~Qa~~l~~~l~-----~~~~~p~~--vi~L~~~~~~~~~ 89 (181)
--|||.+|-+.|-+.+. -.|..|+. +|+-+++.+..+.
T Consensus 10 ~~pRT~EQKralaeE~T~if~evLGcpPgsV~IVi~EV~~en~l~ 54 (72)
T 3mb2_B 10 DRPPDRTRKQAFAAEASAIFQRVIGTPPGRLQLIIQIVSPENTLA 54 (72)
T ss_dssp SSCCCHHHHHHHHHHHHHHHHHHHCCCTTCCEEEEEECCGGGSGG
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEecCccccee
Confidence 34999999998865553 24666663 6777777765543
No 124
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=40.12 E-value=31 Score=22.89 Aligned_cols=31 Identities=13% Similarity=0.048 Sum_probs=21.3
Q ss_pred CcCCCCCCccccCCCCCCCCCCCCCCCCCcccCC
Q 030234 95 WIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRK 128 (181)
Q Consensus 95 ~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~~r~ 128 (181)
..|..||..| ......+..|+.|++..+..+
T Consensus 68 ~~C~~CG~~F---~~~~~kPsrCP~CkSe~Ie~P 98 (105)
T 2gmg_A 68 AQCRKCGFVF---KAEINIPSRCPKCKSEWIEEP 98 (105)
T ss_dssp CBBTTTCCBC---CCCSSCCSSCSSSCCCCBCCC
T ss_pred cChhhCcCee---cccCCCCCCCcCCCCCccCCc
Confidence 4577888777 234455678999998766543
No 125
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=39.48 E-value=70 Score=24.00 Aligned_cols=76 Identities=8% Similarity=0.027 Sum_probs=43.2
Q ss_pred cEEEEeecChHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHHhcHHHHHHHh
Q 030234 75 DKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYS 154 (181)
Q Consensus 75 ~~vi~L~~~~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~~r~dd~~~~i~~Rl~~y~~~~~~l~~~y~ 154 (181)
++-|+|.+|.++..+|...+.. .++..-+.+.+.+.+......-. ..|..
T Consensus 147 ~lkifl~A~~e~Ra~Rr~~~l~----------------------------~~~~~~~~~~~~~~i~~rD~~d~--~r~~~ 196 (233)
T 3r20_A 147 DVKIFLTASAEERARRRNAQNV----------------------------ANGLPDDYATVLADVQRRDHLDS--TRPVS 196 (233)
T ss_dssp SEEEEEECCHHHHHHHHHHHHH----------------------------HTTCCCCHHHHHHHHHHHHHHHH--HSCSS
T ss_pred CEEEEEECCHHHHHHHHHHHHH----------------------------hccCCCCHHHHHHHHHHHHHhhh--hcccc
Confidence 4788999999998888764211 00122244555555544322111 01111
Q ss_pred hcCC---EEEEeCCC-ChHHHHHHHHHHhc
Q 030234 155 KKGI---VAQLHAEK-PPQEVTSEVQKALS 180 (181)
Q Consensus 155 ~~~~---l~~Ida~~-~~~~v~~~i~~~l~ 180 (181)
.... .+.||.+. +++++.+.|.+.+.
T Consensus 197 pl~~~~dal~IDTs~l~iee~v~~I~~~i~ 226 (233)
T 3r20_A 197 PLRAADDALVVDTSDMDQAQVIAHLLDLVT 226 (233)
T ss_dssp CCSCCTTSEEEECTTSCHHHHHHHHHHHC-
T ss_pred ccccccCcEEEECCCCCHHHHHHHHHHHHH
Confidence 1112 27888654 99999999988764
No 126
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=36.45 E-value=12 Score=21.39 Aligned_cols=29 Identities=14% Similarity=0.022 Sum_probs=18.9
Q ss_pred CCcCCCCCCccccCC-------------CCCCCCCCCCCCCC
Q 030234 94 RWIHPSSGRTYHTKF-------------APPKVPGVDDVTGE 122 (181)
Q Consensus 94 r~~~~~tg~~y~~~~-------------~pp~~~~~~~~~~~ 122 (181)
+.+|..||-+|.... ...++...|+.||.
T Consensus 2 ~~~C~~CGyvYd~~~Gdp~~gi~pGt~f~~lP~dw~CP~Cg~ 43 (52)
T 1yk4_A 2 KLSCKICGYIYDEDEGDPDNGISPGTKFEDLPDDWVCPLCGA 43 (52)
T ss_dssp EEEESSSSCEEETTTCBGGGTBCTTCCGGGSCTTCBCTTTCC
T ss_pred cEEeCCCCeEECCCcCCcccCcCCCCCHhHCCCCCcCCCCCC
Confidence 356788999988642 22234557888885
No 127
>2oxl_A Hypothetical protein YMGB; bacterial protein, biofilm, acid resistance, DNA binding Pro dimer, gene regulation; HET: BOG; 1.80A {Escherichia coli}
Probab=35.24 E-value=72 Score=19.01 Aligned_cols=33 Identities=18% Similarity=0.244 Sum_probs=28.3
Q ss_pred hHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCC
Q 030234 11 PLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPS 43 (181)
Q Consensus 11 ~lg~~i~~~l~~G~~vpd~~v~~ll~~~l~~~~ 43 (181)
-+|.-+.+.+..|..|...-++--+-.+|....
T Consensus 9 ~Lg~iv~eil~~g~~vsnKaIi~~LI~rLE~~~ 41 (64)
T 2oxl_A 9 VLGQAVTNLMLSGDNVNNKNIILSLIHSLETTS 41 (64)
T ss_dssp HHHHHHHHHHHTTCCCSHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCC
Confidence 489999999999999999988887777887653
No 128
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=33.71 E-value=51 Score=27.27 Aligned_cols=46 Identities=15% Similarity=0.104 Sum_probs=31.4
Q ss_pred CCeEecCCCCCHHHHHHHHHHHHhcCCCccEEEEee--cC-hHHHHHHHhCC
Q 030234 46 KGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFA--ID-DAVLEERITGR 94 (181)
Q Consensus 46 ~G~iLdGfPrt~~Qa~~l~~~l~~~~~~p~~vi~L~--~~-~~~~~~Rl~~r 94 (181)
.++|+|+--.+.++.+.+.+.+.+.+. .+++|+ |+ .+.+..|+..+
T Consensus 124 ~~vV~D~tn~~~~~R~~~~~~~~~~~~---~vv~l~~~~~~~~~i~~r~~~~ 172 (469)
T 1bif_A 124 HVAVFDATNTTRERRAMIFNFGEQNGY---KTFFVESICVDPEVIAANIVQV 172 (469)
T ss_dssp SEEEEESCCCSHHHHHHHHHHHHHHTC---EEEEEEECCCCHHHHHHHHHHH
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHhcCC---cEEEEEEECCCHHHHHHHHHHh
Confidence 569999999999888877666555443 245555 35 56777776643
No 129
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=32.75 E-value=16 Score=25.89 Aligned_cols=28 Identities=25% Similarity=0.356 Sum_probs=19.7
Q ss_pred CCcCCCCCCccccCCCCCCCCCCCCCCCCCcc
Q 030234 94 RWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLI 125 (181)
Q Consensus 94 r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~ 125 (181)
...|..||+.|... .....|+.||+++.
T Consensus 132 ~y~C~~Cg~~~~~~----~~~~~Cp~CG~~~~ 159 (165)
T 2lcq_A 132 RYVCIGCGRKFSTL----PPGGVCPDCGSKVK 159 (165)
T ss_dssp CEEESSSCCEESSC----CGGGBCTTTCCBEE
T ss_pred EEECCCCCCcccCC----CCCCcCCCCCCcce
Confidence 45788899888753 22247999998853
No 130
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=31.21 E-value=1e+02 Score=21.78 Aligned_cols=22 Identities=18% Similarity=-0.056 Sum_probs=17.6
Q ss_pred CccEEEEeecChHHHHHHHhCC
Q 030234 73 KVDKVLNFAIDDAVLEERITGR 94 (181)
Q Consensus 73 ~p~~vi~L~~~~~~~~~Rl~~r 94 (181)
..|.+|+|+++.+..+.|+..|
T Consensus 124 ~~d~~i~ld~~~~~~~~r~l~r 145 (211)
T 3asz_A 124 LMDLKVFVDADADERFIRRLKR 145 (211)
T ss_dssp TCSEEEEEECCHHHHHHHHHHH
T ss_pred hcCEEEEEeCCHHHHHHHHHHH
Confidence 4689999999998877776654
No 131
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=31.16 E-value=18 Score=20.95 Aligned_cols=29 Identities=17% Similarity=0.184 Sum_probs=19.4
Q ss_pred CCcCCCCCCccccCC-------------CCCCCCCCCCCCCC
Q 030234 94 RWIHPSSGRTYHTKF-------------APPKVPGVDDVTGE 122 (181)
Q Consensus 94 r~~~~~tg~~y~~~~-------------~pp~~~~~~~~~~~ 122 (181)
+.+|..||-+|.... ...++...|+.||.
T Consensus 3 ~y~C~~CGyvYd~~~Gdp~~gi~pGt~f~~lP~dw~CP~Cga 44 (55)
T 2v3b_B 3 KWQCVVCGFIYDEALGLPEEGIPAGTRWEDIPADWVCPDCGV 44 (55)
T ss_dssp EEEETTTCCEEETTTCBTTTTBCTTCCGGGSCTTCCCTTTCC
T ss_pred cEEeCCCCeEECCCcCCcccCcCCCCChhHCCCCCcCCCCCC
Confidence 467888999988643 11234458888885
No 132
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=28.64 E-value=1.3 Score=36.30 Aligned_cols=59 Identities=15% Similarity=0.064 Sum_probs=37.2
Q ss_pred CCccEEEEeecChHHHHHHHhCCCcCCCCCCccccCCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHHhcHHHH
Q 030234 72 KKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVI 150 (181)
Q Consensus 72 ~~p~~vi~L~~~~~~~~~Rl~~r~~~~~tg~~y~~~~~pp~~~~~~~~~~~~l~~r~dd~~~~i~~Rl~~y~~~~~~l~ 150 (181)
..|+++++|++|.+++.+|+..|.....-. .. +..+.+|..+.++.|+..|.+.+....
T Consensus 299 ~~pDLliyLd~~~~~l~~RL~~Rg~t~~~~----l~----------------~~~~~~dy~~~l~~~~~~w~~~l~~~~ 357 (377)
T 1svm_A 299 PKDYLKHCLERSEFLLEKRIIQSGIALLLM----LI----------------WYRPVAEFAQSIQSRIVEWKERLDKEF 357 (377)
T ss_dssp CCHHHHHHHHTCTHHHHTTCTTCHHHHHHH----HH----------------HHSCGGGSCGGGHHHHHHHHHHHHHHC
T ss_pred CCCCeEEEEeCCHHHHHHHHHHcCccHHHh----hh----------------ccCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 357888999999999999998875311000 00 001344555667888888877655443
No 133
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=27.69 E-value=23 Score=28.70 Aligned_cols=20 Identities=35% Similarity=0.433 Sum_probs=18.8
Q ss_pred EEEEeecChHHHHHHHhCCC
Q 030234 76 KVLNFAIDDAVLEERITGRW 95 (181)
Q Consensus 76 ~vi~L~~~~~~~~~Rl~~r~ 95 (181)
++|++++|.++..+|+..|.
T Consensus 291 ~~i~Vdad~ev~~~Rli~R~ 310 (359)
T 2ga8_A 291 LVYKIDIDYEATEERVAKRH 310 (359)
T ss_dssp EEEEEECCHHHHHHHHHHHH
T ss_pred EEEEEECCHHHHHHHHHHhh
Confidence 89999999999999999885
No 134
>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.46 E-value=31 Score=19.46 Aligned_cols=14 Identities=29% Similarity=0.560 Sum_probs=11.5
Q ss_pred CCCcCCCCCCcccc
Q 030234 93 GRWIHPSSGRTYHT 106 (181)
Q Consensus 93 ~r~~~~~tg~~y~~ 106 (181)
+|+.||.||..|+.
T Consensus 11 ~~~~CPrCn~~f~~ 24 (49)
T 2e72_A 11 GRKICPRCNAQFRV 24 (49)
T ss_dssp SCCCCTTTCCCCSS
T ss_pred CceeCCcccccccc
Confidence 67889999988874
No 135
>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage dependent calcium channel, transport protein; 1.95A {Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A 1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A
Probab=25.79 E-value=1.4e+02 Score=23.87 Aligned_cols=20 Identities=10% Similarity=0.076 Sum_probs=14.0
Q ss_pred EEEEeCCCChHHHHHHHHHHhc
Q 030234 159 VAQLHAEKPPQEVTSEVQKALS 180 (181)
Q Consensus 159 l~~Ida~~~~~~v~~~i~~~l~ 180 (181)
++.|| .+.++.+.++.++|.
T Consensus 300 yvIVN--DdLe~A~~~L~~iI~ 319 (337)
T 4dey_A 300 VILDE--NQLEDACEHLADYLE 319 (337)
T ss_dssp EEECC--SSHHHHHHHHHHHHH
T ss_pred EEEEC--CCHHHHHHHHHHHHH
Confidence 45554 467888888888764
No 136
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=25.10 E-value=42 Score=25.95 Aligned_cols=23 Identities=9% Similarity=-0.263 Sum_probs=19.6
Q ss_pred CccEEEEeecChHHHHHHHhCCC
Q 030234 73 KVDKVLNFAIDDAVLEERITGRW 95 (181)
Q Consensus 73 ~p~~vi~L~~~~~~~~~Rl~~r~ 95 (181)
..|.+|++++|.++.++|...|.
T Consensus 147 ~~D~~IfV~a~~~~rl~Rrl~Rd 169 (290)
T 1a7j_A 147 LADLKIGVVPVINLEWIQKIHRD 169 (290)
T ss_dssp GCSEEEEEEECHHHHHHHHHHHT
T ss_pred hCCEEEEEECCHHHHHHHHhhhh
Confidence 36899999999999999987664
No 137
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A
Probab=24.87 E-value=79 Score=25.66 Aligned_cols=46 Identities=7% Similarity=-0.040 Sum_probs=22.6
Q ss_pred CcHHHHHHHHHHHHHhcHHHHHHHhhcCCEEEEeCCCChHHHHHHHHHHhc
Q 030234 130 DTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 180 (181)
Q Consensus 130 d~~~~i~~Rl~~y~~~~~~l~~~y~~~~~l~~Ida~~~~~~v~~~i~~~l~ 180 (181)
++++.+++|++.-. .+...|.+.--++.||-+-+ +..++++.++|.
T Consensus 334 ~s~e~~~~~~~~a~----~~e~~~~~~fd~vivNd~l~-~~a~~~l~~ii~ 379 (391)
T 3tsz_A 334 ESRKSARKLYERSH----KLRKNNHHLFTTTINLNSMN-DGWYGALKEAIQ 379 (391)
T ss_dssp SCCCCHHHHHHHHH----HHHHHHGGGCSEEEECCTTC-CHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH----HHHHhccccCcEEEECCCcH-HHHHHHHHHHHH
Confidence 34445677765442 23333443323556654332 246666666653
No 138
>3t0y_B NEPR; sigma factor, anti-sigma factor, receiver domain, gene regul signal transduction, transcription regulator-protein bindin; 2.10A {Caulobacter vibrioides}
Probab=23.96 E-value=45 Score=20.19 Aligned_cols=29 Identities=24% Similarity=0.461 Sum_probs=20.1
Q ss_pred HHHhcCChHHHHHHHHHH--CCCCCCHHHHH
Q 030234 4 AAVAAKTPLGIKAKEAMD--KGELVSDDLVV 32 (181)
Q Consensus 4 ~~i~~~t~lg~~i~~~l~--~G~~vpd~~v~ 32 (181)
++-..+..+|..++.+.+ ..+.|||+++.
T Consensus 26 e~~~rQ~~IG~~LR~~Yd~vv~EpVPDrFld 56 (68)
T 3t0y_B 26 EARLRQQAIGVKLRQMFDEVVNEPVPDEFLA 56 (68)
T ss_dssp ----CCCHHHHHHHHHTHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCHHHHH
Confidence 333456889999998865 46889999863
No 139
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=22.41 E-value=1.4e+02 Score=22.22 Aligned_cols=20 Identities=20% Similarity=0.255 Sum_probs=17.9
Q ss_pred EEEEeecCh-HHHHHHHhCCC
Q 030234 76 KVLNFAIDD-AVLEERITGRW 95 (181)
Q Consensus 76 ~vi~L~~~~-~~~~~Rl~~r~ 95 (181)
.+|+|++|. +++.+|+..|.
T Consensus 119 ~~i~l~~~~~e~l~~Rl~~R~ 139 (253)
T 2ze6_A 119 HVKRLRLGDSDAFLTRAKQRV 139 (253)
T ss_dssp EEEECCCCCHHHHHHHHHHHH
T ss_pred EEEEecchhHHHHHHHHHHHH
Confidence 689999998 99999998874
No 140
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=21.84 E-value=42 Score=26.01 Aligned_cols=23 Identities=17% Similarity=0.231 Sum_probs=20.2
Q ss_pred CccEEEEeecChHHHHHHHhCCC
Q 030234 73 KVDKVLNFAIDDAVLEERITGRW 95 (181)
Q Consensus 73 ~p~~vi~L~~~~~~~~~Rl~~r~ 95 (181)
..|.+|++++|.++..+|+..|.
T Consensus 214 ~~D~~i~V~~~~~~~~~R~~~R~ 236 (308)
T 1sq5_A 214 FVDFSIYVDAPEDLLQTWYINRF 236 (308)
T ss_dssp GCSEEEEEECCHHHHHHHHHHHH
T ss_pred hCCEEEEEECCHHHHHHHHHHHH
Confidence 37899999999999999998773
No 141
>1o7d_A Lysosomal alpha-mannosidase; hydrolase, glycosyl hydrolase family 38; HET: NAG BMA MAN NDG; 2.70A {Bos taurus} SCOP: c.6.2.1
Probab=21.78 E-value=2.8e+02 Score=21.47 Aligned_cols=147 Identities=15% Similarity=0.196 Sum_probs=79.7
Q ss_pred ChHHHHHHHHHHCCCCCC---------------HHHHHHHH------HHHHcCC-CCCCCeEecCCCCCHHHHHHHHHHH
Q 030234 10 TPLGIKAKEAMDKGELVS---------------DDLVVGII------DEAMKKP-SCQKGFILDGFPRTEVQAQKLDEML 67 (181)
Q Consensus 10 t~lg~~i~~~l~~G~~vp---------------d~~v~~ll------~~~l~~~-~~~~G~iLdGfPrt~~Qa~~l~~~l 67 (181)
.+.-..+++++++|++.+ ..++-+++ ++.+... ...-||..|-|=.+..++..|..
T Consensus 84 Pe~~~~vk~lV~~Grle~vgG~wve~D~~~~~~eslirQl~~G~~~~~~~fG~~~~~~~~W~pD~FG~s~~lP~il~~-- 161 (298)
T 1o7d_A 84 NATQKIVRELVRQGRLEFANGGWVMNDEATTHYGAIIDQMTLGLRFLEETFGSDGRPRVAWHIDPFGHSREQASLFAQ-- 161 (298)
T ss_dssp HHHHHHHHHHHHTTSEEESSCSSSCBCSSSCCHHHHHHHHHHHHHHHHHHHGGGGCCSEEEESSSSSCCHHHHHHHHH--
T ss_pred HHHHHHHHHHHHCCCEEEECceeeccccCCCCHHHHHHHHHHHHHHHHHHcCCCCCCceeEeCCCCCccHHHHHHHHH--
Confidence 456778999999999832 44555554 2334332 14579999999888888886643
Q ss_pred HhcCCCccEEEEeecChHHHHHHHhCC-----CcCCC----CCC-cc-c---cCCCCCCCCCCCCCCCC-CcccCCCCcH
Q 030234 68 EKQGKKVDKVLNFAIDDAVLEERITGR-----WIHPS----SGR-TY-H---TKFAPPKVPGVDDVTGE-PLIQRKDDTA 132 (181)
Q Consensus 68 ~~~~~~p~~vi~L~~~~~~~~~Rl~~r-----~~~~~----tg~-~y-~---~~~~pp~~~~~~~~~~~-~l~~r~dd~~ 132 (181)
. .++.++.=.++...--.|...+ +.-+. .|. ++ | ..+++|+.-.-+..|+. ++...++...
T Consensus 162 --~--Gi~~~~~~R~~~~~~~~~~~~~~~eF~W~g~~~~~~dgs~i~t~~~~~~Y~~~~g~~fd~~~~~~p~~~~~~~~~ 237 (298)
T 1o7d_A 162 --M--GFDGFFFGRLDYQDKKVRKKTLQMEQVWRASTSLKPPTADLFTSVLPNMYNPPEGLCWDMLCADKPVVEDTRSPE 237 (298)
T ss_dssp --H--TCCEEEESCCCHHHHHHHHHTTCSEEEEECCSSSCTTTTEEEEEECSSTTSCCTTCCCSTTCCCCCCCCCTTSTT
T ss_pred --c--CCCeEEEEecccccccccccCCCceEEEECCCCCCCCCCeEEEEEeCCCCCCCCCcccccccCCcCccCCccchH
Confidence 3 4667777777766544444332 11110 121 11 1 12344432111112221 1111111234
Q ss_pred HHHHHHHHHHHHhcHHHHHHHhhcCCEEEE
Q 030234 133 AVLKSRLEAFHKQTEPVIDYYSKKGIVAQL 162 (181)
Q Consensus 133 ~~i~~Rl~~y~~~~~~l~~~y~~~~~l~~I 162 (181)
+.++.|+..|-+.......+|.....++..
T Consensus 238 ~nv~~r~~~~~~~~~~~a~~~~t~~vl~p~ 267 (298)
T 1o7d_A 238 YNAKELVRYFLKLATDQGKLYRTKHTVMTM 267 (298)
T ss_dssp CCHHHHHHHHHHHHHHHHTTSSSSEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCcEEecc
Confidence 568888888888887777778654444433
No 142
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=21.16 E-value=1.3e+02 Score=25.67 Aligned_cols=26 Identities=23% Similarity=0.110 Sum_probs=10.3
Q ss_pred HHHHhcCCCccEEEEeecChHHHHHHHh
Q 030234 65 EMLEKQGKKVDKVLNFAIDDAVLEERIT 92 (181)
Q Consensus 65 ~~l~~~~~~p~~vi~L~~~~~~~~~Rl~ 92 (181)
+++...+ .-.+|+|++|.+++.+|..
T Consensus 462 ~lL~~~g--~f~~V~L~~~~e~~~~R~~ 487 (552)
T 3cr8_A 462 AMIEAVG--GFVEIHVATPIETCESRDR 487 (552)
T ss_dssp HHHHTTS--EEEEEEECC----------
T ss_pred HHHHHcC--CEEEEEEcCCHHHHHHhcc
Confidence 3454433 3478999999999999853
No 143
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}
Probab=20.74 E-value=95 Score=26.02 Aligned_cols=44 Identities=9% Similarity=-0.034 Sum_probs=23.1
Q ss_pred cHHHHHHHHHHHHHhcHHHHHHHhhcCCEEEEeCCCCh-HHHHHHHHHHhc
Q 030234 131 TAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPP-QEVTSEVQKALS 180 (181)
Q Consensus 131 ~~~~i~~Rl~~y~~~~~~l~~~y~~~~~l~~Ida~~~~-~~v~~~i~~~l~ 180 (181)
+++.+++|++.-.+ +...|.+.--++.||-+ . ++.+.++.++|.
T Consensus 327 see~~~r~~~~a~~----~e~~~~~~fD~vIvNdd--l~d~a~~~L~~ii~ 371 (468)
T 3shw_A 327 SRKSARKLYERSHK----LRKNNHHLFTTTINLNS--MNDGWYGALKEAIQ 371 (468)
T ss_dssp CCCCHHHHHHHHHH----HHHHHGGGCSEEEECBT--TBCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH----HHHhhhccCCEEEECCC--cHHHHHHHHHHHHH
Confidence 34467777665432 33334433235566533 4 367777776664
No 144
>1e91_A Paired amphipathic helix protein SIN3B; eukaryotic transcriptional regulation, SIN3, PAH domains, protein-protein interactions; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1pd7_A
Probab=20.58 E-value=1.6e+02 Score=18.26 Aligned_cols=43 Identities=26% Similarity=0.396 Sum_probs=26.9
Q ss_pred HHHHHHH----HHHHHhcHHHHHHHhhcCCEEEEeC------CCChHHHHHHHHHHhc
Q 030234 133 AVLKSRL----EAFHKQTEPVIDYYSKKGIVAQLHA------EKPPQEVTSEVQKALS 180 (181)
Q Consensus 133 ~~i~~Rl----~~y~~~~~~l~~~y~~~~~l~~Ida------~~~~~~v~~~i~~~l~ 180 (181)
..|+.|+ ..|++...-+..|-..+ +|. +.++.+|+++|...+.
T Consensus 15 ~kVK~rF~~~p~~Y~~FL~il~~yk~~~-----~d~~~~~~~~~s~~eV~~~V~~Lf~ 67 (85)
T 1e91_A 15 NKIKTRFLDHPEIYRSFLEILHTYQKEQ-----LHTKGRPFRGMSEEEVFTEVANLFR 67 (85)
T ss_dssp HHHHHHTSSCHHHHHHHHHHHHHHHHTT-----CSSSCCCSSCCCHHHHHHHHHHHTS
T ss_pred HHHHHHHhcChHHHHHHHHHHHHHHHcc-----ccccccccccCcHHHHHHHHHHHHc
Confidence 3455554 56776666555444332 222 4588999999988764
No 145
>2i8d_A Uncharacterized conserved protein of COG5646; ZP_00384875.1, structural genomics, PSI-2, protein structure initiative; HET: MSE UNL; 1.69A {Lactobacillus casei} SCOP: d.198.4.1
Probab=20.44 E-value=99 Score=20.51 Aligned_cols=28 Identities=7% Similarity=0.147 Sum_probs=21.6
Q ss_pred HCCCCCCHHHHHHHHHHHHcCC-CCCCCe
Q 030234 21 DKGELVSDDLVVGIIDEAMKKP-SCQKGF 48 (181)
Q Consensus 21 ~~G~~vpd~~v~~ll~~~l~~~-~~~~G~ 48 (181)
..++.+|.+++.++|+-++.+. +|+.-|
T Consensus 93 ~~~~~ip~~li~~ii~~~~~~k~~~~~f~ 121 (123)
T 2i8d_A 93 PWHKPLDEQLIHDLIAYTIDQKKDATTFW 121 (123)
T ss_dssp ETTSCCCHHHHHHHHHHHHHHTTTCCSSS
T ss_pred CCCCCCCHHHHHHHHHHHHHHhcCccccc
Confidence 4678999999999999999654 455433
Done!