BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 030235
         (181 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q5KY94|AROD_GEOKA 3-dehydroquinate dehydratase OS=Geobacillus kaustophilus (strain
           HTA426) GN=aroD PE=1 SV=1
          Length = 257

 Score = 31.2 bits (69), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 8/77 (10%)

Query: 53  FNGMRVLRSSEEETLITEQETEAVEETVAADEQQPVAVPVSPSDKLTMYFQADGAMNETA 112
           F+G     +  +ETL+ +       E   AD  +   +P SP D L +    + A  E A
Sbjct: 149 FDG-----TPRKETLLADMRQA---ERYGADIAKVAVMPKSPEDVLVLLQATEEARRELA 200

Query: 113 IPAVTQALQGTEGISDL 129
           IP +T A+ G   I+ L
Sbjct: 201 IPLITMAMGGLGAITRL 217


>sp|Q8GYL7|PP361_ARATH Pentatricopeptide repeat-containing protein At5g02830,
           chloroplastic OS=Arabidopsis thaliana GN=At5g02830 PE=2
           SV=3
          Length = 852

 Score = 30.8 bits (68), Expect = 5.0,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 6/110 (5%)

Query: 71  QETEAVEETVAADEQQPVAVPVSPSDKLTMYFQADGAMNETAIPAVTQALQGTE--GISD 128
           ++   + ET+AA+    VA   S  D   +       + +  I +V   L+  E  GI+ 
Sbjct: 98  EDVALIAETLAAESGANVARFASMVDYDLLSKGISSNLRQGKIESVVYTLKRIEKVGIAP 157

Query: 129 LKVQVIEGIATVEKQTTVQATGV----AANLVEIIQGSGFKLQTLNLSFD 174
           L +     +  + KQ    A  V    A +L+EI+ G GFK++ L   FD
Sbjct: 158 LDLVDDSSVKLMRKQFRAMANSVQVEKAIDLMEILAGLGFKIKELVDPFD 207


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.311    0.125    0.332 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,871,968
Number of Sequences: 539616
Number of extensions: 2077187
Number of successful extensions: 5951
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 5947
Number of HSP's gapped (non-prelim): 23
length of query: 181
length of database: 191,569,459
effective HSP length: 110
effective length of query: 71
effective length of database: 132,211,699
effective search space: 9387030629
effective search space used: 9387030629
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (26.6 bits)