Your job contains 1 sequence.
>030236
MKQSKDPFEAALEESPGDSPDELEIETQPQTGTAAGSATAAVTGELEDEFDNLESQAPMS
VSAGPAAKMTMSKNKDEYDEEDDENVDVELGKFPSSSDPAKMAKMQAILNQFTEDQMNRY
ESFRRSALQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMFVGELVETGFCVNVTQILFA
N
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 030236
(181 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2120422 - symbol:TAF11 "TBP-associated factor ... 357 1.1e-32 1
TAIR|locus:2198671 - symbol:TAF11b "TBP-associated factor... 215 1.0e-23 2
ZFIN|ZDB-GENE-040718-283 - symbol:taf11 "TAF11 RNA polyme... 172 4.4e-13 1
UNIPROTKB|E1C6Y5 - symbol:TAF11 "Uncharacterized protein"... 168 1.2e-12 1
UNIPROTKB|Q3ZBP7 - symbol:TAF11 "TAF11 RNA polymerase II,... 168 1.2e-12 1
UNIPROTKB|E2RFN3 - symbol:TAF11 "Uncharacterized protein"... 168 1.2e-12 1
UNIPROTKB|Q15544 - symbol:TAF11 "Transcription initiation... 168 1.2e-12 1
UNIPROTKB|F1RZ14 - symbol:TAF11 "Uncharacterized protein"... 168 1.2e-12 1
MGI|MGI:1916026 - symbol:Taf11 "TAF11 RNA polymerase II, ... 168 1.2e-12 1
RGD|1305626 - symbol:Taf11 "TAF11 RNA polymerase II, TATA... 168 1.2e-12 1
RGD|1562272 - symbol:RGD1562272 "similar to TAF11 RNA pol... 168 1.2e-12 1
WB|WBGene00006393 - symbol:taf-11.1 species:6239 "Caenorh... 167 5.2e-12 1
FB|FBgn0011291 - symbol:Taf11 "TBP-associated factor 11" ... 160 8.2e-12 1
POMBASE|SPAC1002.04c - symbol:taf11 "transcription factor... 141 8.4e-10 1
UNIPROTKB|F1N372 - symbol:F1N372 "Uncharacterized protein... 139 1.4e-09 1
UNIPROTKB|A6NLC8 - symbol:A6NLC8 "Putative TAF11-like pro... 135 3.6e-09 1
WB|WBGene00006394 - symbol:taf-11.2 species:6239 "Caenorh... 136 1.2e-08 1
DICTYBASE|DDB_G0278843 - symbol:taf11 "TFIID subunit" spe... 136 2.3e-08 1
WB|WBGene00006395 - symbol:taf-11.3 species:6239 "Caenorh... 121 2.1e-07 1
CGD|CAL0000201 - symbol:orf19.6923 species:5476 "Candida ... 117 1.6e-06 1
UNIPROTKB|I3LCD0 - symbol:I3LCD0 "Uncharacterized protein... 84 0.0010 1
>TAIR|locus:2120422 [details] [associations]
symbol:TAF11 "TBP-associated factor 11" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=ISS] [GO:0006367 "transcription initiation
from RNA polymerase II promoter" evidence=IEA] [GO:0000394 "RNA
splicing, via endonucleolytic cleavage and ligation" evidence=RCA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=RCA] [GO:0009086 "methionine biosynthetic process"
evidence=RCA] InterPro:IPR006809 InterPro:IPR009072 Pfam:PF04719
GO:GO:0005634 EMBL:CP002687 Gene3D:1.10.20.10 SUPFAM:SSF47113
GO:GO:0003743 GO:GO:0006367 HSSP:Q15544 KO:K03135 PANTHER:PTHR13218
HOGENOM:HOG000006355 OMA:MAKMQTI EMBL:AF238326 EMBL:AF370141
EMBL:AY051084 EMBL:AY463612 IPI:IPI00532915 RefSeq:NP_193761.1
UniGene:At.2189 ProteinModelPortal:Q9M565 SMR:Q9M565 IntAct:Q9M565
STRING:Q9M565 PRIDE:Q9M565 EnsemblPlants:AT4G20280.1 GeneID:827775
KEGG:ath:AT4G20280 TAIR:At4g20280 InParanoid:Q9M565
PhylomeDB:Q9M565 ProtClustDB:CLSN2682938 Genevestigator:Q9M565
Uniprot:Q9M565
Length = 210
Score = 357 (130.7 bits), Expect = 1.1e-32, P = 1.1e-32
Identities = 83/170 (48%), Positives = 103/170 (60%)
Query: 1 MKQSKDPFEAALEESPGDSPDELEIETQPQXXXXXXXXXXXXXXELEDEFDNLESQAPMS 60
MK SKDPFEAA+EE +SP E + + EDE ++ + PM
Sbjct: 1 MKHSKDPFEAAIEEEQEESPPESPVGGGGGGDGSEDGRIEIDQTQDEDERP-VDVRRPMK 59
Query: 61 VSAGPAAKMT--MSXXXXXXXXXXXXXXXXXLGKFPSSSDPAKMAKMQAILNQFTEDQMN 118
A + +T + L K+P+SSDPAKMAKMQ IL+QFTEDQM+
Sbjct: 60 -KAKTSVVVTEAKNKDKDEDDEEEEENMDVELTKYPTSSDPAKMAKMQTILSQFTEDQMS 118
Query: 119 RYESFRRSALQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMFVGELVET 168
RYESFRRSALQ+ M++LL+ +TGSQKI +PM IV CGIAKMFVGELVET
Sbjct: 119 RYESFRRSALQRPQMKKLLIGVTGSQKIGMPMIIVACGIAKMFVGELVET 168
>TAIR|locus:2198671 [details] [associations]
symbol:TAF11b "TBP-associated factor 11B" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=ISS] [GO:0006367 "transcription initiation
from RNA polymerase II promoter" evidence=IEA] InterPro:IPR006809
InterPro:IPR009072 Pfam:PF04719 EMBL:CP002684 GO:GO:0005634
Gene3D:1.10.20.10 SUPFAM:SSF47113 GO:GO:0006367 KO:K03135
PANTHER:PTHR13218 IPI:IPI00529133 RefSeq:NP_173429.1
UniGene:At.51686 ProteinModelPortal:F4HR03 SMR:F4HR03
EnsemblPlants:AT1G20000.1 GeneID:838589 KEGG:ath:AT1G20000
OMA:RVVMRER Uniprot:F4HR03
Length = 204
Score = 215 (80.7 bits), Expect = 1.0e-23, Sum P(2) = 1.0e-23
Identities = 46/75 (61%), Positives = 57/75 (76%)
Query: 95 SSSDPAKMA-KMQAILNQFTEDQMNRYESFRRSALQKSNMRRLLVSITGSQKISLPMTIV 153
+ +DP A KMQ IL+QFTE+QM+RYESFRRS +KS+M +L+ ITG K+ M IV
Sbjct: 88 TGADPVTRANKMQKILSQFTEEQMSRYESFRRSGFKKSDMEKLVQRITGGPKMDDTMNIV 147
Query: 154 VCGIAKMFVGELVET 168
V GIAKMFVG+LVET
Sbjct: 148 VRGIAKMFVGDLVET 162
Score = 72 (30.4 bits), Expect = 1.0e-23, Sum P(2) = 1.0e-23
Identities = 16/24 (66%), Positives = 18/24 (75%)
Query: 1 MKQSKDPFEAALEESPGDSPDELE 24
MK SKDPFEAA+EE +SP E E
Sbjct: 32 MKHSKDPFEAAMEEQE-ESPVETE 54
>ZFIN|ZDB-GENE-040718-283 [details] [associations]
symbol:taf11 "TAF11 RNA polymerase II, TATA box
binding protein (TBP)-associated factor" species:7955 "Danio rerio"
[GO:0046982 "protein heterodimerization activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006367 "transcription
initiation from RNA polymerase II promoter" evidence=IEA]
InterPro:IPR006809 InterPro:IPR009072 Pfam:PF04719
ZFIN:ZDB-GENE-040718-283 GO:GO:0005634 Gene3D:1.10.20.10
SUPFAM:SSF47113 GO:GO:0006367 KO:K03135 PANTHER:PTHR13218 CTD:6882
HOVERGEN:HBG079228 EMBL:BC076258 IPI:IPI00488284
RefSeq:NP_001002548.1 UniGene:Dr.83629 ProteinModelPortal:Q6DGT1
SMR:Q6DGT1 STRING:Q6DGT1 PRIDE:Q6DGT1 GeneID:436821 KEGG:dre:436821
InParanoid:Q6DGT1 NextBio:20831253 ArrayExpress:Q6DGT1 Bgee:Q6DGT1
Uniprot:Q6DGT1
Length = 206
Score = 172 (65.6 bits), Expect = 4.4e-13, P = 4.4e-13
Identities = 34/70 (48%), Positives = 52/70 (74%)
Query: 98 DPAKMAKMQAILNQFTEDQMNRYESFRRSALQKSNMRRLLVSITGSQKISLPMTIVVCGI 157
D ++ KMQ +++ F+E+Q+NRYE +RRSA K+ ++RL+ SITGS +S + I + GI
Sbjct: 94 DEDEIQKMQVLVSSFSEEQLNRYEMYRRSAFPKAAIKRLIQSITGSS-VSQNVVIAMSGI 152
Query: 158 AKMFVGELVE 167
AK+F GE+VE
Sbjct: 153 AKVFAGEIVE 162
>UNIPROTKB|E1C6Y5 [details] [associations]
symbol:TAF11 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0006367 "transcription initiation from RNA polymerase
II promoter" evidence=IEA] [GO:0046982 "protein heterodimerization
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003713 "transcription coactivator activity" evidence=IEA]
[GO:0005669 "transcription factor TFIID complex" evidence=IEA]
[GO:0042809 "vitamin D receptor binding" evidence=IEA] [GO:0043923
"positive regulation by host of viral transcription" evidence=IEA]
[GO:0046966 "thyroid hormone receptor binding" evidence=IEA]
[GO:0047485 "protein N-terminus binding" evidence=IEA]
InterPro:IPR006809 InterPro:IPR009072 Pfam:PF04719 GO:GO:0003677
GO:GO:0003713 Gene3D:1.10.20.10 SUPFAM:SSF47113 GO:GO:0006367
GO:GO:0005669 KO:K03135 PANTHER:PTHR13218 CTD:6882
GeneTree:ENSGT00390000013228 EMBL:AADN02045038 IPI:IPI00604168
RefSeq:NP_001231834.1 UniGene:Gga.41847 Ensembl:ENSGALT00000004314
GeneID:419899 KEGG:gga:419899 OMA:ENKAIAM NextBio:20822889
Uniprot:E1C6Y5
Length = 217
Score = 168 (64.2 bits), Expect = 1.2e-12, P = 1.2e-12
Identities = 33/70 (47%), Positives = 53/70 (75%)
Query: 98 DPAKMAKMQAILNQFTEDQMNRYESFRRSALQKSNMRRLLVSITGSQKISLPMTIVVCGI 157
D ++ KMQ +++ F+E+Q+NRYE +RRSA K+ ++RL+ SITG+ +S + I + GI
Sbjct: 105 DEDEIQKMQILVSSFSEEQLNRYEMYRRSAFPKAAIKRLIQSITGTS-VSQNVVIAMSGI 163
Query: 158 AKMFVGELVE 167
+K+FVGE+VE
Sbjct: 164 SKVFVGEVVE 173
>UNIPROTKB|Q3ZBP7 [details] [associations]
symbol:TAF11 "TAF11 RNA polymerase II, TATA box binding
protein (TBP)-associated factor, 28kDa" species:9913 "Bos taurus"
[GO:0047485 "protein N-terminus binding" evidence=IEA] [GO:0046966
"thyroid hormone receptor binding" evidence=IEA] [GO:0043923
"positive regulation by host of viral transcription" evidence=IEA]
[GO:0042809 "vitamin D receptor binding" evidence=IEA] [GO:0005669
"transcription factor TFIID complex" evidence=IEA] [GO:0003713
"transcription coactivator activity" evidence=IEA] [GO:0046982
"protein heterodimerization activity" evidence=IEA] [GO:0006367
"transcription initiation from RNA polymerase II promoter"
evidence=IEA] InterPro:IPR006809 InterPro:IPR009072 Pfam:PF04719
GO:GO:0003713 Gene3D:1.10.20.10 SUPFAM:SSF47113 GO:GO:0006367
GO:GO:0005669 GO:GO:0043923 eggNOG:COG5251 KO:K03135
PANTHER:PTHR13218 CTD:6882 GeneTree:ENSGT00390000013228
HOGENOM:HOG000006355 HOVERGEN:HBG079228 OMA:DDAHESP
OrthoDB:EOG4B8JFB EMBL:DAAA02054932 EMBL:BC103180 IPI:IPI00694509
RefSeq:NP_001029448.1 UniGene:Bt.49380 SMR:Q3ZBP7 STRING:Q3ZBP7
Ensembl:ENSBTAT00000022463 GeneID:507047 KEGG:bta:507047
InParanoid:Q3ZBP7 NextBio:20867874 Uniprot:Q3ZBP7
Length = 210
Score = 168 (64.2 bits), Expect = 1.2e-12, P = 1.2e-12
Identities = 33/70 (47%), Positives = 53/70 (75%)
Query: 98 DPAKMAKMQAILNQFTEDQMNRYESFRRSALQKSNMRRLLVSITGSQKISLPMTIVVCGI 157
D ++ KMQ +++ F+E+Q+NRYE +RRSA K+ ++RL+ SITG+ +S + I + GI
Sbjct: 98 DEDEIQKMQILVSSFSEEQLNRYEMYRRSAFPKAAIKRLIQSITGTS-VSQNVVIAMSGI 156
Query: 158 AKMFVGELVE 167
+K+FVGE+VE
Sbjct: 157 SKVFVGEVVE 166
>UNIPROTKB|E2RFN3 [details] [associations]
symbol:TAF11 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0047485 "protein N-terminus binding"
evidence=IEA] [GO:0046966 "thyroid hormone receptor binding"
evidence=IEA] [GO:0043923 "positive regulation by host of viral
transcription" evidence=IEA] [GO:0042809 "vitamin D receptor
binding" evidence=IEA] [GO:0005669 "transcription factor TFIID
complex" evidence=IEA] [GO:0003713 "transcription coactivator
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0046982 "protein heterodimerization activity" evidence=IEA]
[GO:0006367 "transcription initiation from RNA polymerase II
promoter" evidence=IEA] InterPro:IPR006809 InterPro:IPR009072
Pfam:PF04719 GO:GO:0003677 GO:GO:0003713 Gene3D:1.10.20.10
SUPFAM:SSF47113 GO:GO:0006367 GO:GO:0005669 GO:GO:0043923 KO:K03135
PANTHER:PTHR13218 CTD:6882 GeneTree:ENSGT00390000013228 OMA:DDAHESP
EMBL:AAEX03008259 RefSeq:XP_532116.1 Ensembl:ENSCAFT00000001929
GeneID:474881 KEGG:cfa:474881 NextBio:20850821 Uniprot:E2RFN3
Length = 211
Score = 168 (64.2 bits), Expect = 1.2e-12, P = 1.2e-12
Identities = 33/70 (47%), Positives = 53/70 (75%)
Query: 98 DPAKMAKMQAILNQFTEDQMNRYESFRRSALQKSNMRRLLVSITGSQKISLPMTIVVCGI 157
D ++ KMQ +++ F+E+Q+NRYE +RRSA K+ ++RL+ SITG+ +S + I + GI
Sbjct: 99 DEDEIQKMQILVSSFSEEQLNRYEMYRRSAFPKAAIKRLIQSITGTS-VSQNVVIAMSGI 157
Query: 158 AKMFVGELVE 167
+K+FVGE+VE
Sbjct: 158 SKVFVGEVVE 167
>UNIPROTKB|Q15544 [details] [associations]
symbol:TAF11 "Transcription initiation factor TFIID subunit
11" species:9606 "Homo sapiens" [GO:0046982 "protein
heterodimerization activity" evidence=IEA] [GO:0006355 "regulation
of transcription, DNA-dependent" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0006367 "transcription initiation from
RNA polymerase II promoter" evidence=IC;TAS] [GO:0042809 "vitamin D
receptor binding" evidence=IPI] [GO:0046966 "thyroid hormone
receptor binding" evidence=IPI] [GO:0043923 "positive regulation by
host of viral transcription" evidence=IDA] [GO:0003713
"transcription coactivator activity" evidence=IDA] [GO:0005669
"transcription factor TFIID complex" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IC;TAS] [GO:0047485 "protein
N-terminus binding" evidence=IPI] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016032 "viral reproduction" evidence=TAS]
Reactome:REACT_71 InterPro:IPR006809 InterPro:IPR009072
Pfam:PF04719 GO:GO:0005634 Reactome:REACT_116125 GO:GO:0016032
GO:GO:0006355 GO:GO:0003677 GO:GO:0003713 Gene3D:1.10.20.10
SUPFAM:SSF47113 GO:GO:0006368 GO:GO:0003743 GO:GO:0006367
EMBL:AL033520 Reactome:REACT_1788 GO:GO:0005669 GO:GO:0043923
eggNOG:COG5251 KO:K03135 PANTHER:PTHR13218 CTD:6882 EMBL:X83928
EMBL:D63705 EMBL:AK302226 EMBL:AK313475 EMBL:CR542068 EMBL:BT019404
EMBL:BT019405 EMBL:AY217767 EMBL:BC021972 EMBL:AF118094
IPI:IPI00018110 IPI:IPI00910537 PIR:JC4540 RefSeq:NP_001257417.1
RefSeq:NP_005634.1 UniGene:Hs.112444 PDB:1BH8 PDB:1BH9 PDBsum:1BH8
PDBsum:1BH9 ProteinModelPortal:Q15544 SMR:Q15544 DIP:DIP-495N
IntAct:Q15544 STRING:Q15544 PhosphoSite:Q15544 DMDM:3024707
PRIDE:Q15544 DNASU:6882 Ensembl:ENST00000361288
Ensembl:ENST00000420584 GeneID:6882 KEGG:hsa:6882 UCSC:uc003ojw.1
GeneCards:GC06M034892 HGNC:HGNC:11544 MIM:600772 neXtProt:NX_Q15544
PharmGKB:PA36319 HOGENOM:HOG000006355 HOVERGEN:HBG079228
InParanoid:Q15544 OMA:DDAHESP OrthoDB:EOG4B8JFB PhylomeDB:Q15544
EvolutionaryTrace:Q15544 GenomeRNAi:6882 NextBio:26887
ArrayExpress:Q15544 Bgee:Q15544 CleanEx:HS_TAF11
Genevestigator:Q15544 GermOnline:ENSG00000064995 Uniprot:Q15544
Length = 211
Score = 168 (64.2 bits), Expect = 1.2e-12, P = 1.2e-12
Identities = 33/70 (47%), Positives = 53/70 (75%)
Query: 98 DPAKMAKMQAILNQFTEDQMNRYESFRRSALQKSNMRRLLVSITGSQKISLPMTIVVCGI 157
D ++ KMQ +++ F+E+Q+NRYE +RRSA K+ ++RL+ SITG+ +S + I + GI
Sbjct: 99 DEDEIQKMQILVSSFSEEQLNRYEMYRRSAFPKAAIKRLIQSITGTS-VSQNVVIAMSGI 157
Query: 158 AKMFVGELVE 167
+K+FVGE+VE
Sbjct: 158 SKVFVGEVVE 167
>UNIPROTKB|F1RZ14 [details] [associations]
symbol:TAF11 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0047485 "protein N-terminus binding" evidence=IEA]
[GO:0046966 "thyroid hormone receptor binding" evidence=IEA]
[GO:0043923 "positive regulation by host of viral transcription"
evidence=IEA] [GO:0042809 "vitamin D receptor binding"
evidence=IEA] [GO:0005669 "transcription factor TFIID complex"
evidence=IEA] [GO:0003713 "transcription coactivator activity"
evidence=IEA] [GO:0046982 "protein heterodimerization activity"
evidence=IEA] [GO:0006367 "transcription initiation from RNA
polymerase II promoter" evidence=IEA] InterPro:IPR006809
InterPro:IPR009072 Pfam:PF04719 GO:GO:0003713 Gene3D:1.10.20.10
SUPFAM:SSF47113 GO:GO:0006367 GO:GO:0005669 GO:GO:0043923 KO:K03135
PANTHER:PTHR13218 CTD:6882 GeneTree:ENSGT00390000013228 OMA:DDAHESP
EMBL:CT797453 RefSeq:NP_001171823.1 UniGene:Ssc.3726
Ensembl:ENSSSCT00000001708 GeneID:100151814 KEGG:ssc:100151814
Uniprot:F1RZ14
Length = 211
Score = 168 (64.2 bits), Expect = 1.2e-12, P = 1.2e-12
Identities = 33/70 (47%), Positives = 53/70 (75%)
Query: 98 DPAKMAKMQAILNQFTEDQMNRYESFRRSALQKSNMRRLLVSITGSQKISLPMTIVVCGI 157
D ++ KMQ +++ F+E+Q+NRYE +RRSA K+ ++RL+ SITG+ +S + I + GI
Sbjct: 99 DEDEIQKMQILVSSFSEEQLNRYEMYRRSAFPKAAIKRLIQSITGTS-VSQNVVIAMSGI 157
Query: 158 AKMFVGELVE 167
+K+FVGE+VE
Sbjct: 158 SKVFVGEVVE 167
>MGI|MGI:1916026 [details] [associations]
symbol:Taf11 "TAF11 RNA polymerase II, TATA box binding
protein (TBP)-associated factor" species:10090 "Mus musculus"
[GO:0003677 "DNA binding" evidence=IDA] [GO:0003713 "transcription
coactivator activity" evidence=ISO] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005669 "transcription factor TFIID complex"
evidence=ISO] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006367 "transcription initiation
from RNA polymerase II promoter" evidence=IEA] [GO:0042809 "vitamin
D receptor binding" evidence=ISO] [GO:0043923 "positive regulation
by host of viral transcription" evidence=ISO] [GO:0046966 "thyroid
hormone receptor binding" evidence=ISO] [GO:0046982 "protein
heterodimerization activity" evidence=IEA] [GO:0047485 "protein
N-terminus binding" evidence=ISO] InterPro:IPR006809
InterPro:IPR009072 Pfam:PF04719 MGI:MGI:1916026 GO:GO:0006355
GO:GO:0003677 GO:GO:0003713 Gene3D:1.10.20.10 SUPFAM:SSF47113
GO:GO:0006367 GO:GO:0005669 GO:GO:0043923 eggNOG:COG5251 KO:K03135
PANTHER:PTHR13218 CTD:6882 GeneTree:ENSGT00390000013228
HOGENOM:HOG000006355 HOVERGEN:HBG079228 OrthoDB:EOG4B8JFB
EMBL:AK004168 EMBL:AK050689 EMBL:AK133851 EMBL:BC005603
IPI:IPI00165715 RefSeq:NP_081112.1 UniGene:Mm.267998
ProteinModelPortal:Q99JX1 SMR:Q99JX1 IntAct:Q99JX1 STRING:Q99JX1
PhosphoSite:Q99JX1 PRIDE:Q99JX1 Ensembl:ENSMUST00000025057
Ensembl:ENSMUST00000114848 GeneID:68776 KEGG:mmu:68776
InParanoid:Q99JX1 OMA:MDNLGES ChiTaRS:Taf11 NextBio:327906
Bgee:Q99JX1 Genevestigator:Q99JX1 GermOnline:ENSMUSG00000024218
Uniprot:Q99JX1
Length = 211
Score = 168 (64.2 bits), Expect = 1.2e-12, P = 1.2e-12
Identities = 33/70 (47%), Positives = 53/70 (75%)
Query: 98 DPAKMAKMQAILNQFTEDQMNRYESFRRSALQKSNMRRLLVSITGSQKISLPMTIVVCGI 157
D ++ KMQ +++ F+E+Q+NRYE +RRSA K+ ++RL+ SITG+ +S + I + GI
Sbjct: 99 DEDEIQKMQILVSSFSEEQLNRYEMYRRSAFPKAAIKRLIQSITGTS-VSQNVVIAMSGI 157
Query: 158 AKMFVGELVE 167
+K+FVGE+VE
Sbjct: 158 SKVFVGEVVE 167
>RGD|1305626 [details] [associations]
symbol:Taf11 "TAF11 RNA polymerase II, TATA box binding protein
(TBP)-associated factor" species:10116 "Rattus norvegicus"
[GO:0003674 "molecular_function" evidence=ND] [GO:0003677 "DNA
binding" evidence=IEA;ISO] [GO:0003713 "transcription coactivator
activity" evidence=IEA;ISO] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=ISO] [GO:0005669
"transcription factor TFIID complex" evidence=IEA;ISO] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006367 "transcription initiation from RNA polymerase II
promoter" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0042809 "vitamin D receptor binding"
evidence=IEA;ISO] [GO:0043923 "positive regulation by host of viral
transcription" evidence=IEA;ISO] [GO:0046966 "thyroid hormone
receptor binding" evidence=IEA;ISO] [GO:0046982 "protein
heterodimerization activity" evidence=IEA] [GO:0047485 "protein
N-terminus binding" evidence=IEA;ISO] InterPro:IPR006809
InterPro:IPR009072 Pfam:PF04719 RGD:1305626 GO:GO:0006355
GO:GO:0003677 GO:GO:0003713 Gene3D:1.10.20.10 SUPFAM:SSF47113
GO:GO:0006367 GO:GO:0005669 GO:GO:0043923 eggNOG:COG5251 KO:K03135
PANTHER:PTHR13218 CTD:6882 GeneTree:ENSGT00390000013228
HOGENOM:HOG000006355 HOVERGEN:HBG079228 OrthoDB:EOG4B8JFB
OMA:MDNLGES EMBL:BC086421 IPI:IPI00360451 RefSeq:NP_001008351.1
UniGene:Rn.11920 ProteinModelPortal:Q5U1X0 SMR:Q5U1X0 STRING:Q5U1X0
Ensembl:ENSRNOT00000038195 GeneID:309638 KEGG:rno:309638
UCSC:RGD:1305626 InParanoid:Q5U1X0 NextBio:661097
Genevestigator:Q5U1X0 GermOnline:ENSRNOG00000024601 Uniprot:Q5U1X0
Length = 211
Score = 168 (64.2 bits), Expect = 1.2e-12, P = 1.2e-12
Identities = 33/70 (47%), Positives = 53/70 (75%)
Query: 98 DPAKMAKMQAILNQFTEDQMNRYESFRRSALQKSNMRRLLVSITGSQKISLPMTIVVCGI 157
D ++ KMQ +++ F+E+Q+NRYE +RRSA K+ ++RL+ SITG+ +S + I + GI
Sbjct: 99 DEDEIQKMQILVSSFSEEQLNRYEMYRRSAFPKAAIKRLIQSITGTS-VSQNVVIAMSGI 157
Query: 158 AKMFVGELVE 167
+K+FVGE+VE
Sbjct: 158 SKVFVGEVVE 167
>RGD|1562272 [details] [associations]
symbol:RGD1562272 "similar to TAF11 RNA polymerase II, TATA box
binding protein (TBP)-associated factor" species:10116 "Rattus
norvegicus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] REFSEQ:XM_001081219
Ncbi:XP_001081219
Length = 207
Score = 168 (64.2 bits), Expect = 1.2e-12, P = 1.2e-12
Identities = 33/70 (47%), Positives = 53/70 (75%)
Query: 98 DPAKMAKMQAILNQFTEDQMNRYESFRRSALQKSNMRRLLVSITGSQKISLPMTIVVCGI 157
D ++ KMQ +++ F+E+Q+NRYE +RRSA K+ ++RL+ SITG+ +S + I + GI
Sbjct: 95 DEDEIQKMQILVSSFSEEQLNRYEMYRRSAFPKAAIKRLIQSITGTS-VSQNVVIAMSGI 153
Query: 158 AKMFVGELVE 167
+K+FVGE+VE
Sbjct: 154 SKVFVGEVVE 163
>WB|WBGene00006393 [details] [associations]
symbol:taf-11.1 species:6239 "Caenorhabditis elegans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0006367 "transcription
initiation from RNA polymerase II promoter" evidence=IEA]
InterPro:IPR006809 InterPro:IPR009072 Pfam:PF04719 GO:GO:0005634
Gene3D:1.10.20.10 SUPFAM:SSF47113 GO:GO:0006367 EMBL:FO080925
HSSP:Q15544 eggNOG:COG5251 KO:K03135 PANTHER:PTHR13218
GeneTree:ENSGT00390000013228 PIR:T29243 RefSeq:NP_508727.1
ProteinModelPortal:Q20563 SMR:Q20563 STRING:Q20563 PaxDb:Q20563
EnsemblMetazoa:F48D6.1.1 EnsemblMetazoa:F48D6.1.2 GeneID:180698
KEGG:cel:CELE_F48D6.1 UCSC:F48D6.1 CTD:180698 WormBase:F48D6.1
HOGENOM:HOG000015927 InParanoid:Q20563 OMA:YRRSSFQ NextBio:910512
Uniprot:Q20563
Length = 345
Score = 167 (63.8 bits), Expect = 5.2e-12, P = 5.2e-12
Identities = 30/64 (46%), Positives = 46/64 (71%)
Query: 104 KMQAILNQFTEDQMNRYESFRRSALQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMFVG 163
K Q +L+ F+++Q+ RYES+RRS+ QKS +RRL+ TG + + I + G+AK+FVG
Sbjct: 235 KTQVLLSNFSQEQLERYESYRRSSFQKSTIRRLISQYTGGVNVGQSVVIAIAGLAKVFVG 294
Query: 164 ELVE 167
E+VE
Sbjct: 295 EVVE 298
>FB|FBgn0011291 [details] [associations]
symbol:Taf11 "TBP-associated factor 11" species:7227
"Drosophila melanogaster" [GO:0005669 "transcription factor TFIID
complex" evidence=ISS;IDA] [GO:0001075 "RNA polymerase II core
promoter sequence-specific DNA binding transcription factor
activity involved in preinitiation complex assembly" evidence=IDA]
[GO:0008134 "transcription factor binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=NAS;IDA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=NAS] [GO:0006367
"transcription initiation from RNA polymerase II promoter"
evidence=ISS] [GO:0046982 "protein heterodimerization activity"
evidence=IEA] InterPro:IPR006809 InterPro:IPR009072 Pfam:PF04719
EMBL:AE014134 GO:GO:0006355 Gene3D:1.10.20.10 SUPFAM:SSF47113
GO:GO:0005669 GO:GO:0051123 eggNOG:COG5251 KO:K03135
PANTHER:PTHR13218 EMBL:S67660 EMBL:U06457 PIR:B49453
RefSeq:NP_723484.1 UniGene:Dm.19807 ProteinModelPortal:P49906
SMR:P49906 DIP:DIP-18832N IntAct:P49906 MINT:MINT-783316
STRING:P49906 PaxDb:P49906 PRIDE:P49906 EnsemblMetazoa:FBtr0079924
GeneID:34293 KEGG:dme:Dmel_CG4079 CTD:6882 FlyBase:FBgn0011291
GeneTree:ENSGT00390000013228 InParanoid:P49906 OMA:QPYFRLN
OrthoDB:EOG4KD53D PhylomeDB:P49906 GenomeRNAi:34293 NextBio:787786
Bgee:P49906 GermOnline:CG4079 Uniprot:P49906
Length = 196
Score = 160 (61.4 bits), Expect = 8.2e-12, P = 8.2e-12
Identities = 33/73 (45%), Positives = 51/73 (69%)
Query: 104 KMQAILNQFTEDQMNRYESFRRSALQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMFVG 163
+MQ +++ FTE+Q++RYE +RRSA K+ ++RL+ +ITG +S + I + GIAK+FVG
Sbjct: 88 RMQVLVSNFTEEQLDRYEMYRRSAFPKAAVKRLMQTITGCS-VSQNVVIAMSGIAKVFVG 146
Query: 164 ELVETGFCVNVTQ 176
E+VE V Q
Sbjct: 147 EVVEEALDVMEAQ 159
>POMBASE|SPAC1002.04c [details] [associations]
symbol:taf11 "transcription factor TFIID complex
subunit Taf11 (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0000785 "chromatin" evidence=NAS] [GO:0000991 "core RNA
polymerase II binding transcription factor activity" evidence=ISO]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005669 "transcription
factor TFIID complex" evidence=ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006367 "transcription initiation
from RNA polymerase II promoter" evidence=ISO] [GO:0046982 "protein
heterodimerization activity" evidence=IEA] InterPro:IPR006809
InterPro:IPR009072 Pfam:PF04719 PomBase:SPAC1002.04c GO:GO:0005829
EMBL:CU329670 GO:GO:0006355 GenomeReviews:CU329670_GR GO:GO:0000785
Gene3D:1.10.20.10 SUPFAM:SSF47113 GO:GO:0006367 GO:GO:0000991
GO:GO:0005669 HSSP:Q15544 eggNOG:COG5251 KO:K03135
PANTHER:PTHR13218 RefSeq:NP_593491.1 ProteinModelPortal:Q9US54
STRING:Q9US54 EnsemblFungi:SPAC1002.04c.1 GeneID:2543276
KEGG:spo:SPAC1002.04c OMA:MAKMQTI OrthoDB:EOG4Z0FFX
NextBio:20804297 Uniprot:Q9US54
Length = 199
Score = 141 (54.7 bits), Expect = 8.4e-10, P = 8.4e-10
Identities = 32/79 (40%), Positives = 50/79 (63%)
Query: 91 GKFPSSSDPAKMAKMQA--ILNQFTEDQMNRYESFRRSALQKSNMRRLLVSITGSQKISL 148
GK P +D K++ +L F E+QM RYE FRR+ L K+N+++L I +Q ++
Sbjct: 78 GK-PGETDDEANEKLRTKYLLESFDEEQMQRYEVFRRANLNKTNVKKLANQIL-NQSVTP 135
Query: 149 PMTIVVCGIAKMFVGELVE 167
+ IV+ G +K+FVGE+VE
Sbjct: 136 NVAIVISGFSKVFVGEIVE 154
>UNIPROTKB|F1N372 [details] [associations]
symbol:F1N372 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0046982 "protein heterodimerization activity"
evidence=IEA] [GO:0006367 "transcription initiation from RNA
polymerase II promoter" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR006809 InterPro:IPR009072 Pfam:PF04719
GO:GO:0005634 GO:GO:0003677 Gene3D:1.10.20.10 SUPFAM:SSF47113
GO:GO:0006367 PANTHER:PTHR13218 GeneTree:ENSGT00390000013228
EMBL:DAAA02051046 IPI:IPI00704785 Ensembl:ENSBTAT00000007219
OMA:VFRRSAF NextBio:20899522 Uniprot:F1N372
Length = 208
Score = 139 (54.0 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 27/64 (42%), Positives = 46/64 (71%)
Query: 104 KMQAILNQFTEDQMNRYESFRRSALQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMFVG 163
KM+ ++ +++Q+NRYE FRRSA KS ++ L+ ++ G+ +S + I + G+AK+FVG
Sbjct: 103 KMRTLVAAMSKEQLNRYEVFRRSAFPKSTIKHLIQAVAGTP-VSQNVVIAMSGMAKVFVG 161
Query: 164 ELVE 167
E+VE
Sbjct: 162 EVVE 165
>UNIPROTKB|A6NLC8 [details] [associations]
symbol:A6NLC8 "Putative TAF11-like protein ENSP00000332601"
species:9606 "Homo sapiens" [GO:0005634 "nucleus" evidence=IEA]
[GO:0006367 "transcription initiation from RNA polymerase II
promoter" evidence=IEA] [GO:0046982 "protein heterodimerization
activity" evidence=IEA] InterPro:IPR006809 InterPro:IPR009072
Pfam:PF04719 GO:GO:0005634 Gene3D:1.10.20.10 SUPFAM:SSF47113
GO:GO:0006367 EMBL:CH471102 eggNOG:COG5251 PANTHER:PTHR13218
HOVERGEN:HBG079228 EMBL:AC106774 IPI:IPI00178311
ProteinModelPortal:A6NLC8 SMR:A6NLC8 PRIDE:A6NLC8
neXtProt:NX_A6NLC8 InParanoid:A6NLC8 Genevestigator:A6NLC8
Uniprot:A6NLC8
Length = 198
Score = 135 (52.6 bits), Expect = 3.6e-09, P = 3.6e-09
Identities = 30/70 (42%), Positives = 47/70 (67%)
Query: 98 DPAKMAKMQAILNQFTEDQMNRYESFRRSALQKSNMRRLLVSITGSQKISLPMTIVVCGI 157
D + +M +L+ +E+Q++RYE RRSA K+ + L+ SITG + +S + I + GI
Sbjct: 87 DAEEAQRMTTLLSAMSEEQLSRYEVCRRSAFPKACIAGLMRSITG-RSVSENVAIAMAGI 145
Query: 158 AKMFVGELVE 167
AK+FVGE+VE
Sbjct: 146 AKVFVGEVVE 155
>WB|WBGene00006394 [details] [associations]
symbol:taf-11.2 species:6239 "Caenorhabditis elegans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0006367 "transcription
initiation from RNA polymerase II promoter" evidence=IEA]
InterPro:IPR006809 InterPro:IPR009072 Pfam:PF04719 GO:GO:0005634
Gene3D:1.10.20.10 SUPFAM:SSF47113 GO:GO:0006367 HSSP:Q15544
eggNOG:COG5251 KO:K03135 PANTHER:PTHR13218
GeneTree:ENSGT00390000013228 EMBL:Z75545 PIR:T23572
RefSeq:NP_492019.1 ProteinModelPortal:Q21417 SMR:Q21417
STRING:Q21417 EnsemblMetazoa:K10D3.3 GeneID:172451
KEGG:cel:CELE_K10D3.3 UCSC:K10D3.3 CTD:172451 WormBase:K10D3.3
InParanoid:Q21417 NextBio:875569 Uniprot:Q21417
Length = 327
Score = 136 (52.9 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 25/66 (37%), Positives = 44/66 (66%)
Query: 102 MAKMQAILNQFTEDQMNRYESFRRSALQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMF 161
+ K Q ++ F+++Q+ RYE +R+S+ +KS ++RL+ TG + + I V G+AK+
Sbjct: 218 LLKNQVLVANFSQEQIERYEVYRKSSFKKSTIKRLINEFTGGIDLGKKVDIAVAGLAKVL 277
Query: 162 VGELVE 167
VGE+VE
Sbjct: 278 VGEIVE 283
>DICTYBASE|DDB_G0278843 [details] [associations]
symbol:taf11 "TFIID subunit" species:44689
"Dictyostelium discoideum" [GO:0046982 "protein heterodimerization
activity" evidence=IEA] [GO:0006367 "transcription initiation from
RNA polymerase II promoter" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005669 "transcription factor TFIID complex"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR006809 InterPro:IPR009072 Pfam:PF04719
dictyBase:DDB_G0278843 GO:GO:0006355 GenomeReviews:CM000152_GR
Gene3D:1.10.20.10 SUPFAM:SSF47113 EMBL:AAFI02000024 GO:GO:0006367
GO:GO:0005669 RefSeq:XP_642001.1 HSSP:Q15544
ProteinModelPortal:Q54XM9 SMR:Q54XM9 STRING:Q54XM9
EnsemblProtists:DDB0231000 GeneID:8621733 KEGG:ddi:DDB_G0278843
eggNOG:COG5251 KO:K03135 OMA:LARSIME PANTHER:PTHR13218
Uniprot:Q54XM9
Length = 450
Score = 136 (52.9 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 25/64 (39%), Positives = 46/64 (71%)
Query: 104 KMQAILNQFTEDQMNRYESFRRSALQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMFVG 163
+M ++ F+EDQ R+E ++RS+ Q++N+++++ S+ S ++ IV+ GIAK+FVG
Sbjct: 343 QMNTLIKHFSEDQQTRFEYYKRSSFQRANIKKVMQSVL-SAPVNQTSAIVMGGIAKVFVG 401
Query: 164 ELVE 167
E+VE
Sbjct: 402 EIVE 405
>WB|WBGene00006395 [details] [associations]
symbol:taf-11.3 species:6239 "Caenorhabditis elegans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0006367 "transcription
initiation from RNA polymerase II promoter" evidence=IEA]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
InterPro:IPR006809 InterPro:IPR009072 Pfam:PF04719 GO:GO:0005634
GO:GO:0040010 Gene3D:1.10.20.10 SUPFAM:SSF47113 GO:GO:0006367
EMBL:Z35640 eggNOG:COG5251 PANTHER:PTHR13218
GeneTree:ENSGT00390000013228 RefSeq:NP_499315.3
ProteinModelPortal:Q20361 SMR:Q20361 STRING:Q20361
EnsemblMetazoa:F43D9.5 GeneID:260198 KEGG:cel:CELE_F43D9.5
UCSC:F43D9.5 CTD:260198 WormBase:F43D9.5 InParanoid:Q20361
OMA:MEIDANA NextBio:952952 Uniprot:Q20361
Length = 228
Score = 121 (47.7 bits), Expect = 2.1e-07, P = 2.1e-07
Identities = 24/73 (32%), Positives = 43/73 (58%)
Query: 95 SSSDPAKMAKMQAILNQFTEDQMNRYESFRRSALQKSNMRRLLVSITGSQKISLPMTIVV 154
+ SD K ++ F+ +Q++RY +F+RS + ++ ++ TG Q S P+ + V
Sbjct: 115 NKSDEEKSIAESLLIANFSNEQLDRYTAFKRSRFNRRIIKNVITRTTG-QIPSDPLALAV 173
Query: 155 CGIAKMFVGELVE 167
G+ KMF+G+LVE
Sbjct: 174 AGLTKMFIGDLVE 186
>CGD|CAL0000201 [details] [associations]
symbol:orf19.6923 species:5476 "Candida albicans" [GO:0005669
"transcription factor TFIID complex" evidence=IEA] [GO:0051123 "RNA
polymerase II transcriptional preinitiation complex assembly"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
InterPro:IPR006809 InterPro:IPR009072 Pfam:PF04719 CGD:CAL0000201
GO:GO:0005634 Gene3D:1.10.20.10 SUPFAM:SSF47113 GO:GO:0006367
EMBL:AACQ01000148 EMBL:AACQ01000147 eggNOG:COG5251 KO:K03135
PANTHER:PTHR13218 RefSeq:XP_712687.1 RefSeq:XP_712724.1
ProteinModelPortal:Q59SU6 GeneID:3645657 GeneID:3645694
KEGG:cal:CaO19.14185 KEGG:cal:CaO19.6923 HOGENOM:HOG000246714
Uniprot:Q59SU6
Length = 343
Score = 117 (46.2 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 20/63 (31%), Positives = 40/63 (63%)
Query: 108 ILNQFTEDQMNRYESFRRSALQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMFVGELVE 167
+++ FT+DQM R+E++RR + K ++++ I G I + +V+ G++K F+GE++
Sbjct: 195 LISNFTDDQMERFEAYRRMTVNKPGVKKICNGIVG-HTIPQIIAVVMAGVSKSFLGEIIS 253
Query: 168 TGF 170
F
Sbjct: 254 KAF 256
>UNIPROTKB|I3LCD0 [details] [associations]
symbol:I3LCD0 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0046982 "protein heterodimerization activity"
evidence=IEA] [GO:0006367 "transcription initiation from RNA
polymerase II promoter" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR006809 InterPro:IPR009072 Pfam:PF04719
GO:GO:0005634 GO:GO:0003677 Gene3D:1.10.20.10 SUPFAM:SSF47113
GO:GO:0006367 PANTHER:PTHR13218 GeneTree:ENSGT00390000013228
EMBL:CU467007 Ensembl:ENSSSCT00000029373 Uniprot:I3LCD0
Length = 102
Score = 84 (34.6 bits), Expect = 0.0010, P = 0.0010
Identities = 21/59 (35%), Positives = 37/59 (62%)
Query: 112 FTEDQM-NRYESFRRSALQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMFVGELV-ET 168
FT ++ + YE + + A ++N R L+ S+ GS I+ + I + +AK+F+GE+V ET
Sbjct: 3 FTSQELLDCYEVYHQPAFPRANQRHLIQSMAGSL-IAQNIVIAMSCVAKIFIGEVVAET 60
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.313 0.127 0.345 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 181 150 0.00087 104 3 11 23 0.37 32
30 0.39 34
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 21
No. of states in DFA: 523 (56 KB)
Total size of DFA: 112 KB (2076 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 11.91u 0.12s 12.03t Elapsed: 00:00:01
Total cpu time: 11.91u 0.12s 12.03t Elapsed: 00:00:01
Start: Fri May 10 15:21:25 2013 End: Fri May 10 15:21:26 2013