BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030236
(181 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5RA91|TAF11_PONAB Transcription initiation factor TFIID subunit 11 OS=Pongo abelii
GN=TAF11 PE=2 SV=1
Length = 211
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 54/75 (72%), Gaps = 1/75 (1%)
Query: 98 DPAKMAKMQAILNQFTEDQMNRYESFRRSALQKSNMRRLLVSITGSQKISLPMTIVVCGI 157
D ++ KMQ +++ F+E+Q+NRYE +RRSA K+ ++RL+ SITG+ +S + I + GI
Sbjct: 99 DEDEIQKMQILVSSFSEEQLNRYEMYRRSAFPKAAIKRLIQSITGTS-VSQNVVIAMSGI 157
Query: 158 AKMFVGELVETGFCV 172
+K+FVGE+VE V
Sbjct: 158 SKVFVGEVVEEALDV 172
>sp|Q15544|TAF11_HUMAN Transcription initiation factor TFIID subunit 11 OS=Homo sapiens
GN=TAF11 PE=1 SV=1
Length = 211
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 54/75 (72%), Gaps = 1/75 (1%)
Query: 98 DPAKMAKMQAILNQFTEDQMNRYESFRRSALQKSNMRRLLVSITGSQKISLPMTIVVCGI 157
D ++ KMQ +++ F+E+Q+NRYE +RRSA K+ ++RL+ SITG+ +S + I + GI
Sbjct: 99 DEDEIQKMQILVSSFSEEQLNRYEMYRRSAFPKAAIKRLIQSITGTS-VSQNVVIAMSGI 157
Query: 158 AKMFVGELVETGFCV 172
+K+FVGE+VE V
Sbjct: 158 SKVFVGEVVEEALDV 172
>sp|Q5U1X0|TAF11_RAT Transcription initiation factor TFIID subunit 11 OS=Rattus
norvegicus GN=Taf11 PE=2 SV=1
Length = 211
Score = 72.4 bits (176), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 53/72 (73%), Gaps = 1/72 (1%)
Query: 101 KMAKMQAILNQFTEDQMNRYESFRRSALQKSNMRRLLVSITGSQKISLPMTIVVCGIAKM 160
++ KMQ +++ F+E+Q+NRYE +RRSA K+ ++RL+ SITG+ +S + I + GI+K+
Sbjct: 102 EIQKMQILVSSFSEEQLNRYEMYRRSAFPKAAIKRLIQSITGTS-VSQNVVIAMSGISKV 160
Query: 161 FVGELVETGFCV 172
FVGE+VE V
Sbjct: 161 FVGEVVEEALDV 172
>sp|Q99JX1|TAF11_MOUSE Transcription initiation factor TFIID subunit 11 OS=Mus musculus
GN=Taf11 PE=2 SV=1
Length = 211
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 53/72 (73%), Gaps = 1/72 (1%)
Query: 101 KMAKMQAILNQFTEDQMNRYESFRRSALQKSNMRRLLVSITGSQKISLPMTIVVCGIAKM 160
++ KMQ +++ F+E+Q+NRYE +RRSA K+ ++RL+ SITG+ +S + I + GI+K+
Sbjct: 102 EIQKMQILVSSFSEEQLNRYEMYRRSAFPKAAIKRLIQSITGTS-VSQNVVIAMSGISKV 160
Query: 161 FVGELVETGFCV 172
FVGE+VE V
Sbjct: 161 FVGEVVEEALDV 172
>sp|P49906|TAF11_DROME Transcription initiation factor TFIID subunit 11 OS=Drosophila
melanogaster GN=Taf11 PE=1 SV=1
Length = 196
Score = 67.8 bits (164), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 49/68 (72%), Gaps = 1/68 (1%)
Query: 105 MQAILNQFTEDQMNRYESFRRSALQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMFVGE 164
MQ +++ FTE+Q++RYE +RRSA K+ ++RL+ +ITG +S + I + GIAK+FVGE
Sbjct: 89 MQVLVSNFTEEQLDRYEMYRRSAFPKAAVKRLMQTITGC-SVSQNVVIAMSGIAKVFVGE 147
Query: 165 LVETGFCV 172
+VE V
Sbjct: 148 VVEEALDV 155
>sp|Q54XM9|TAF11_DICDI Transcription initiation factor TFIID subunit 11 OS=Dictyostelium
discoideum GN=taf11 PE=3 SV=1
Length = 450
Score = 60.5 bits (145), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 47/72 (65%), Gaps = 9/72 (12%)
Query: 105 MQAILNQFTEDQMNRYESFRRSALQKSNMRRLLVSITGSQKISLPMT----IVVCGIAKM 160
M ++ F+EDQ R+E ++RS+ Q++N+++++ S+ +S P+ IV+ GIAK+
Sbjct: 344 MNTLIKHFSEDQQTRFEYYKRSSFQRANIKKVMQSV-----LSAPVNQTSAIVMGGIAKV 398
Query: 161 FVGELVETGFCV 172
FVGE+VE +
Sbjct: 399 FVGEIVELARSI 410
>sp|Q9US54|TAF11_SCHPO Transcription initiation factor TFIID subunit 11
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=taf11 PE=3 SV=1
Length = 199
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 65/114 (57%), Gaps = 12/114 (10%)
Query: 64 GPAAKMTMSKNKDEYD--EEDDEN------VDVELGKFPSSSDPAKMAKMQA--ILNQFT 113
P++K + N+ E + EEDD + + GK P +D K++ +L F
Sbjct: 43 APSSKEKENWNRQEENDLEEDDRDDFGTAAISKVAGK-PGETDDEANEKLRTKYLLESFD 101
Query: 114 EDQMNRYESFRRSALQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMFVGELVE 167
E+QM RYE FRR+ L K+N+++L I +Q ++ + IV+ G +K+FVGE+VE
Sbjct: 102 EEQMQRYEVFRRANLNKTNVKKLANQIL-NQSVTPNVAIVISGFSKVFVGEIVE 154
>sp|A6NLC8|YE016_HUMAN Putative TAF11-like protein ENSP00000332601 OS=Homo sapiens PE=3
SV=2
Length = 198
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 46/69 (66%), Gaps = 1/69 (1%)
Query: 104 KMQAILNQFTEDQMNRYESFRRSALQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMFVG 163
+M +L+ +E+Q++RYE RRSA K+ + L+ SITG + +S + I + GIAK+FVG
Sbjct: 93 RMTTLLSAMSEEQLSRYEVCRRSAFPKACIAGLMRSITG-RSVSENVAIAMAGIAKVFVG 151
Query: 164 ELVETGFCV 172
E+VE V
Sbjct: 152 EVVEEALDV 160
>sp|Q04226|TAF11_YEAST Transcription initiation factor TFIID subunit 11 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=TAF11 PE=1
SV=1
Length = 346
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 100 AKMAKMQAILNQFTEDQMNRYESFRRSALQKSNMRRLLVSITGSQKISLPMTIVVCGIAK 159
A+ + + ++ +DQ NR+E F R++L K+ +++ L S +Q IS + + + + K
Sbjct: 119 AQDEQFKLLVTNLDKDQTNRFEVFHRTSLNKTQVKK-LASTVANQTISENIRVFLQAVGK 177
Query: 160 MFVGELVETGFCV 172
++ GE++E V
Sbjct: 178 IYAGEIIELAMIV 190
>sp|Q02725|VTC3_YEAST Vacuolar transporter chaperone 3 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=VTC3 PE=1 SV=1
Length = 835
Score = 36.6 bits (83), Expect = 0.088, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 9/65 (13%)
Query: 40 AAVTGELEDEFDNLESQAPMSVSAGPAAKMTMSKNKDEYDEEDDENVDVELGK-----FP 94
A+V E +D DNLES V P A++ + + + + N DVE+GK FP
Sbjct: 234 ASVPNENDDFVDNLES----DVRVQPEARLNIGSKSNSLSSDGNSNQDVEIGKSKSVIFP 289
Query: 95 SSSDP 99
S DP
Sbjct: 290 QSYDP 294
>sp|P26039|TLN1_MOUSE Talin-1 OS=Mus musculus GN=Tln1 PE=1 SV=2
Length = 2541
Score = 35.0 bits (79), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 44/102 (43%), Gaps = 12/102 (11%)
Query: 36 GSATAAVTGELEDEFDNLESQAPMSVSAGPAAKMTMSKNKDEYDEEDDENVDVELGKFPS 95
G+A AVT L + ++++ A AGPA + YD+ D + V F S
Sbjct: 768 GAAATAVTQALNELLQHVKAHA---TGAGPAGR---------YDQATDTILTVTENIFSS 815
Query: 96 SSDPAKMAKMQAILNQFTEDQMNRYESFRRSALQKSNMRRLL 137
D +M + IL Q T D +N ++ N R+LL
Sbjct: 816 MGDAGEMVRQARILAQATSDLVNAIKADAEGESDLENSRKLL 857
>sp|Q9Y490|TLN1_HUMAN Talin-1 OS=Homo sapiens GN=TLN1 PE=1 SV=3
Length = 2541
Score = 35.0 bits (79), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 44/102 (43%), Gaps = 12/102 (11%)
Query: 36 GSATAAVTGELEDEFDNLESQAPMSVSAGPAAKMTMSKNKDEYDEEDDENVDVELGKFPS 95
G+A AVT L + ++++ A AGPA + YD+ D + V F S
Sbjct: 768 GAAATAVTQALNELLQHVKAHA---TGAGPAGR---------YDQATDTILTVTENIFSS 815
Query: 96 SSDPAKMAKMQAILNQFTEDQMNRYESFRRSALQKSNMRRLL 137
D +M + IL Q T D +N ++ N R+LL
Sbjct: 816 MGDAGEMVRQARILAQATSDLVNAIKADAEGESDLENSRKLL 857
>sp|Q6PEE2|CTIF_MOUSE CBP80/20-dependent translation initiation factor OS=Mus musculus
GN=Ctif PE=1 SV=2
Length = 600
Score = 31.2 bits (69), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 47/105 (44%), Gaps = 10/105 (9%)
Query: 12 LEESPGDSPDE-LEIETQPQTGTAAGS--ATAAVTGELEDEFDNLESQAPMSVSAGPAAK 68
LE+ PGD+ LE P T T A S T + G E E + ++ P + P
Sbjct: 282 LEDGPGDTGHSGLEPPCSPDTLTPAASERPTPQLPGGPEAEIKHKDTVLPERLRERPKIT 341
Query: 69 MTMS---KNKDEYDEEDDENVDVELGKFPSSSDPAKMAKMQAILN 110
+ S + + E+D + V VE SS P+KM ++ ILN
Sbjct: 342 LLQSSKDRLRRRLKEKDRDEVAVET----SSPQPSKMDRLMEILN 382
>sp|P54939|TLN1_CHICK Talin-1 OS=Gallus gallus GN=TLN1 PE=1 SV=2
Length = 2541
Score = 30.8 bits (68), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 39/102 (38%), Gaps = 12/102 (11%)
Query: 36 GSATAAVTGELEDEFDNLESQAPMSVSAGPAAKMTMSKNKDEYDEEDDENVDVELGKFPS 95
G A AVT L D +++ A G YD+ D ++V F S
Sbjct: 768 GVAATAVTQALNDLLQHIKQHATGGQPIG------------RYDQATDTILNVTENIFSS 815
Query: 96 SSDPAKMAKMQAILNQFTEDQMNRYESFRRSALQKSNMRRLL 137
D +M + IL Q T D +N ++ N R+LL
Sbjct: 816 MGDAGEMVRQARILAQATSDLVNAIKADAEGETDLENSRKLL 857
>sp|A8F4G0|RPOB_THELT DNA-directed RNA polymerase subunit beta OS=Thermotoga lettingae
(strain ATCC BAA-301 / DSM 14385 / TMO) GN=rpoB PE=3
SV=1
Length = 1172
Score = 30.4 bits (67), Expect = 7.2, Method: Composition-based stats.
Identities = 27/97 (27%), Positives = 41/97 (42%), Gaps = 10/97 (10%)
Query: 53 LESQAPMSVSAGPAAKMTMSKNKDEYDEEDDENVDVEL------GKFPS-SSDPAKMAKM 105
LES+ V A PAA+ T+ K D Y E D VE+ G+ P ++ A + +
Sbjct: 267 LESKIATVVRAHPAAQKTLEKMVDTYGEVDSSKAYVEIFRKLKPGEIPRVNTAKAYLTSL 326
Query: 106 QAILNQFTEDQMNRYESFRRSALQKSNMRRLLVSITG 142
+F + RY+ +R RR L + G
Sbjct: 327 YFSTERFELSDVGRYKINKRLT---QAYRRYLAQVKG 360
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.310 0.125 0.337
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,181,029
Number of Sequences: 539616
Number of extensions: 2346882
Number of successful extensions: 9982
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 109
Number of HSP's that attempted gapping in prelim test: 9798
Number of HSP's gapped (non-prelim): 262
length of query: 181
length of database: 191,569,459
effective HSP length: 110
effective length of query: 71
effective length of database: 132,211,699
effective search space: 9387030629
effective search space used: 9387030629
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 57 (26.6 bits)