Query 030236
Match_columns 181
No_of_seqs 110 out of 159
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 17:10:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030236.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030236hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1bh9_B TAFII28; histone fold, 100.0 8E-29 2.7E-33 184.0 8.3 65 112-177 1-65 (89)
2 1n1j_B NF-YC; histone-like PAI 95.7 0.018 6.3E-07 42.1 5.4 55 120-174 12-66 (97)
3 3b0c_W CENP-W, centromere prot 95.5 0.034 1.2E-06 38.9 6.0 49 126-174 3-51 (76)
4 1b67_A Protein (histone HMFA); 94.7 0.067 2.3E-06 36.1 5.6 47 126-173 1-47 (68)
5 4g92_C HAPE; transcription fac 94.7 0.042 1.4E-06 41.7 4.9 53 122-174 36-88 (119)
6 1ku5_A HPHA, archaeal histon; 94.7 0.065 2.2E-06 36.6 5.4 47 126-173 5-51 (70)
7 2hue_C Histone H4; mini beta s 93.6 0.16 5.4E-06 36.2 5.8 48 126-174 9-56 (84)
8 1tzy_D Histone H4-VI; histone- 93.3 0.17 6E-06 37.2 5.8 47 127-174 29-75 (103)
9 2yfw_B Histone H4, H4; cell cy 93.2 0.18 6.1E-06 37.3 5.7 46 128-174 30-75 (103)
10 1id3_B Histone H4; nucleosome 92.5 0.25 8.6E-06 36.6 5.7 47 127-174 28-74 (102)
11 1n1j_A NF-YB; histone-like PAI 91.9 0.3 1E-05 35.0 5.4 49 126-174 7-56 (93)
12 1jfi_A Transcription regulator 91.2 0.44 1.5E-05 34.8 5.7 49 125-173 9-57 (98)
13 3b0c_T CENP-T, centromere prot 91.1 0.33 1.1E-05 36.5 5.1 49 124-173 4-52 (111)
14 1taf_B TFIID TBP associated fa 90.6 0.67 2.3E-05 32.6 5.9 48 126-174 5-52 (70)
15 2byk_B Chrac-14; nucleosome sl 87.9 0.73 2.5E-05 35.4 4.9 49 126-174 8-57 (128)
16 1jfi_B DR1 protein, transcript 86.5 1.3 4.5E-05 36.2 5.9 48 127-174 15-62 (179)
17 1f1e_A Histone fold protein; a 85.2 1.2 4.2E-05 35.5 5.0 48 126-173 3-50 (154)
18 2byk_A Chrac-16; nucleosome sl 85.0 0.47 1.6E-05 37.2 2.4 50 124-173 16-65 (140)
19 1f1e_A Histone fold protein; a 84.7 1.5 5E-05 35.0 5.2 46 127-173 82-127 (154)
20 3b0b_C CENP-X, centromere prot 82.7 2.9 9.9E-05 30.1 5.7 49 125-173 6-56 (81)
21 1h3o_B Transcription initiatio 79.9 4.8 0.00016 28.7 5.9 50 127-176 5-54 (76)
22 2nqb_C Histone H2A; nucleosome 75.0 5.8 0.0002 30.3 5.5 47 127-173 23-69 (123)
23 1tzy_A Histone H2A-IV; histone 74.9 5.8 0.0002 30.6 5.6 47 127-173 25-71 (129)
24 2f8n_K Histone H2A type 1; nuc 73.4 6.8 0.00023 31.1 5.7 47 127-173 44-90 (149)
25 1id3_C Histone H2A.1; nucleoso 71.9 6.8 0.00023 30.2 5.3 47 127-173 25-71 (131)
26 4dra_E Centromere protein X; D 70.3 9 0.00031 27.8 5.3 48 126-173 11-60 (84)
27 2f8n_G Core histone macro-H2A. 65.9 12 0.00043 28.3 5.6 47 127-173 22-68 (120)
28 1f66_C Histone H2A.Z; nucleoso 57.2 22 0.00077 27.2 5.7 47 127-173 27-74 (128)
29 2jss_A Chimera of histone H2B. 46.1 44 0.0015 26.7 6.0 47 127-173 105-152 (192)
30 3v9r_B MHF2, uncharacterized p 35.5 54 0.0019 24.2 4.5 43 128-170 2-46 (88)
31 1dum_A Magainin 2; antibiotic, 32.2 20 0.00068 21.0 1.4 13 155-167 10-22 (26)
32 1f8v_D Mature capsid protein g 28.7 26 0.00089 22.6 1.6 26 132-157 6-32 (40)
33 1nov_D Nodamura virus coat pro 28.2 37 0.0013 22.3 2.3 28 132-159 6-34 (44)
34 2beq_D E2 glycoprotein; viral 27.6 45 0.0015 22.1 2.7 24 101-124 18-46 (48)
35 3zed_D Capsid protein VP3; vir 26.5 66 0.0023 27.6 4.2 45 119-163 137-185 (242)
36 1ojh_A NBLA; degradation prote 24.4 64 0.0022 22.5 3.1 41 103-143 16-58 (65)
37 1mfq_C SRP54, signal recogniti 24.0 1.1E+02 0.0037 23.6 4.7 38 99-139 57-97 (129)
38 3nrw_A Phage integrase/site-sp 23.7 1.2E+02 0.0041 20.5 4.5 31 109-139 51-82 (117)
39 3iz5_t 60S acidic ribosomal pr 21.5 20 0.00067 27.0 0.0 13 77-89 95-107 (110)
40 3izc_t 60S acidic ribosomal pr 21.4 20 0.00068 26.8 0.0 12 77-88 91-102 (106)
41 2qxf_A Exodeoxyribonuclease I; 20.2 74 0.0025 28.8 3.5 31 110-140 417-447 (482)
42 3izc_v 60S acidic ribosomal pr 20.1 22 0.00075 26.6 0.0 12 77-88 91-102 (106)
No 1
>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*
Probab=99.95 E-value=8e-29 Score=184.00 Aligned_cols=65 Identities=46% Similarity=0.729 Sum_probs=62.9
Q ss_pred CCHHHHHHHHHHHhcCCChHHHHHHHHHhhcCccCCccHHHHhhhhhHHHHHHHHHHHHHHHHHhh
Q 030236 112 FTEDQMNRYESFRRSALQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMFVGELVETGFCVNVTQI 177 (181)
Q Consensus 112 fdeEQldRYE~fRRS~f~K~~IKKLi~svtgsQsVs~nv~IavaGiAKvFVGEIVE~Ar~Vq~ewl 177 (181)
||+||++|||.||||+|+|++|||||++++| |+||+|++|+|+||||+|||||||+|++||.+|.
T Consensus 1 ft~eQ~~Rye~~Rrs~f~k~~vKrl~~~~~~-~~v~~~v~i~v~glaKvfVgelVE~A~~V~~~~~ 65 (89)
T 1bh9_B 1 FSEEQLNRYEMYRRSAFPKAAIKRLIQSITG-TSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWG 65 (89)
T ss_dssp CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHS-SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHcC-CCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8999999999999999999999999999985 6899999999999999999999999999999995
No 2
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=95.69 E-value=0.018 Score=42.05 Aligned_cols=55 Identities=16% Similarity=0.279 Sum_probs=40.9
Q ss_pred HHHHHhcCCChHHHHHHHHHhhcCccCCccHHHHhhhhhHHHHHHHHHHHHHHHH
Q 030236 120 YESFRRSALQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMFVGELVETGFCVNV 174 (181)
Q Consensus 120 YE~fRRS~f~K~~IKKLi~svtgsQsVs~nv~IavaGiAKvFVGEIVE~Ar~Vq~ 174 (181)
-..|+...||-+.|||||...-....|+....++++-.+-+||-+|++.|.....
T Consensus 12 ~~~~~~~~lP~arIkrImK~~~~~~~is~eA~~~laka~E~Fi~~l~~~A~~~a~ 66 (97)
T 1n1j_B 12 VKDFRVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTE 66 (97)
T ss_dssp --------CCHHHHHHHHTTSTTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCcCCCcCCHHHHHHHHccCccccccChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568999999999999998864435689999999999999999999999977653
No 3
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=95.51 E-value=0.034 Score=38.90 Aligned_cols=49 Identities=10% Similarity=0.185 Sum_probs=43.8
Q ss_pred cCCChHHHHHHHHHhhcCccCCccHHHHhhhhhHHHHHHHHHHHHHHHH
Q 030236 126 SALQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMFVGELVETGFCVNV 174 (181)
Q Consensus 126 S~f~K~~IKKLi~svtgsQsVs~nv~IavaGiAKvFVGEIVE~Ar~Vq~ 174 (181)
..||++.|+|||.++.+...|+.....+|.-..-.||-.|..+|.++..
T Consensus 3 ~~LP~A~V~rI~K~~~p~~~is~~A~~~i~~~~~~Fi~~la~eA~~~a~ 51 (76)
T 3b0c_W 3 RTVPRGTLRKIIKKHKPHLRLAANTDLLVHLSFLLFLHRLAEEARTNAF 51 (76)
T ss_dssp -CCCHHHHHHHHHHHCTTCEECTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccccHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4799999999999887777899999999999999999999999988854
No 4
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=94.74 E-value=0.067 Score=36.13 Aligned_cols=47 Identities=13% Similarity=0.244 Sum_probs=41.8
Q ss_pred cCCChHHHHHHHHHhhcCccCCccHHHHhhhhhHHHHHHHHHHHHHHH
Q 030236 126 SALQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMFVGELVETGFCVN 173 (181)
Q Consensus 126 S~f~K~~IKKLi~svtgsQsVs~nv~IavaGiAKvFVGEIVE~Ar~Vq 173 (181)
+.||++.|+|||.++ +...++.....++...+..|+-+|.+.|-.+.
T Consensus 1 ~~lP~a~v~Ri~k~~-~~~ris~~A~~~l~~a~e~fi~~l~~~A~~~a 47 (68)
T 1b67_A 1 GELPIAPIGRIIKNA-GAERVSDDARIALAKVLEEMGEEIASEAVKLA 47 (68)
T ss_dssp CCSCHHHHHHHHHHT-TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccHHHHHHhcC-CcccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 469999999999998 66678999999999999999999999987664
No 5
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=94.69 E-value=0.042 Score=41.71 Aligned_cols=53 Identities=13% Similarity=0.226 Sum_probs=44.8
Q ss_pred HHHhcCCChHHHHHHHHHhhcCccCCccHHHHhhhhhHHHHHHHHHHHHHHHH
Q 030236 122 SFRRSALQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMFVGELVETGFCVNV 174 (181)
Q Consensus 122 ~fRRS~f~K~~IKKLi~svtgsQsVs~nv~IavaGiAKvFVGEIVE~Ar~Vq~ 174 (181)
.|+-..||-+.|||||...-....|+....++++..+-+||.+|++.|-.+..
T Consensus 36 d~k~~~lPvaRIkrImK~d~~~~~is~eA~v~la~a~E~Fi~~L~~~A~~~a~ 88 (119)
T 4g92_C 36 DYKIHQLPLARIKKVMKADPEVKMISAEAPILFAKGCDVFITELTMRAWIHAE 88 (119)
T ss_dssp CSSCCSSCHHHHHHHHHTSTTCCEECTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCCHHHHHHHHhhCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37778899999999998654445688889999999999999999999977653
No 6
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=94.67 E-value=0.065 Score=36.65 Aligned_cols=47 Identities=15% Similarity=0.234 Sum_probs=42.1
Q ss_pred cCCChHHHHHHHHHhhcCccCCccHHHHhhhhhHHHHHHHHHHHHHHH
Q 030236 126 SALQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMFVGELVETGFCVN 173 (181)
Q Consensus 126 S~f~K~~IKKLi~svtgsQsVs~nv~IavaGiAKvFVGEIVE~Ar~Vq 173 (181)
+.||++.|+||+... |...++..+..++..+.+.|+-+|.+.|....
T Consensus 5 ~~lp~a~v~Rl~r~~-g~~ris~~a~~~l~e~~~~~~~~v~~dA~~~a 51 (70)
T 1ku5_A 5 GELPIAPVDRLIRKA-GAERVSEQAAKVLAEYLEEYAIEIAKKAVEFA 51 (70)
T ss_dssp CCSCHHHHHHHHHHT-TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCChHHHHHHHHHc-CcceeCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 579999999999986 66789999999999999999999999887654
No 7
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=93.60 E-value=0.16 Score=36.20 Aligned_cols=48 Identities=21% Similarity=0.300 Sum_probs=42.3
Q ss_pred cCCChHHHHHHHHHhhcCccCCccHHHHhhhhhHHHHHHHHHHHHHHHH
Q 030236 126 SALQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMFVGELVETGFCVNV 174 (181)
Q Consensus 126 S~f~K~~IKKLi~svtgsQsVs~nv~IavaGiAKvFVGEIVE~Ar~Vq~ 174 (181)
..||++.|+||+.+. |-..+|..+.-.++.+.+.|+-+|+..|...+.
T Consensus 9 ~~ip~~~I~Riar~~-Gv~rIs~da~~~l~~~l~~~~~~I~~dA~~~a~ 56 (84)
T 2hue_C 9 QGITKPAIRRLARRG-GVKRISGLIYEETRGVLKVFLENVIRDAVTYTE 56 (84)
T ss_dssp CSSCHHHHHHHHHHT-TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHc-CchhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 469999999999886 555699999999999999999999999988764
No 8
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=93.30 E-value=0.17 Score=37.24 Aligned_cols=47 Identities=21% Similarity=0.305 Sum_probs=41.4
Q ss_pred CCChHHHHHHHHHhhcCccCCccHHHHhhhhhHHHHHHHHHHHHHHHH
Q 030236 127 ALQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMFVGELVETGFCVNV 174 (181)
Q Consensus 127 ~f~K~~IKKLi~svtgsQsVs~nv~IavaGiAKvFVGEIVE~Ar~Vq~ 174 (181)
.||++.|+||+.+. |-..|+..+...++.+.+.|+-+|++.|...+.
T Consensus 29 gip~~~I~Rlar~~-G~~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~ 75 (103)
T 1tzy_D 29 GITKPAIRRLARRG-GVKRISGLIYEETRGVLKVFLENVIRDAVTYTE 75 (103)
T ss_dssp GSCHHHHHHHHHHT-TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHc-CccccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 39999999999886 445799999999999999999999999987753
No 9
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=93.20 E-value=0.18 Score=37.26 Aligned_cols=46 Identities=22% Similarity=0.267 Sum_probs=41.0
Q ss_pred CChHHHHHHHHHhhcCccCCccHHHHhhhhhHHHHHHHHHHHHHHHH
Q 030236 128 LQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMFVGELVETGFCVNV 174 (181)
Q Consensus 128 f~K~~IKKLi~svtgsQsVs~nv~IavaGiAKvFVGEIVE~Ar~Vq~ 174 (181)
||++.|+||+.+. |-..|+..+...++.+.+.|+-+|++.|...+.
T Consensus 30 ip~~~I~Rlar~~-G~~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~ 75 (103)
T 2yfw_B 30 ITKPAIRRLARRG-GVKRISGLIYEEVRNVLKTFLESVIRDAVTYTE 75 (103)
T ss_dssp CCHHHHHHHHHHT-TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHc-CccccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999886 445799999999999999999999999987653
No 10
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=92.46 E-value=0.25 Score=36.63 Aligned_cols=47 Identities=21% Similarity=0.259 Sum_probs=41.6
Q ss_pred CCChHHHHHHHHHhhcCccCCccHHHHhhhhhHHHHHHHHHHHHHHHH
Q 030236 127 ALQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMFVGELVETGFCVNV 174 (181)
Q Consensus 127 ~f~K~~IKKLi~svtgsQsVs~nv~IavaGiAKvFVGEIVE~Ar~Vq~ 174 (181)
.||++.|+||+.+. |-..||..+.-.++.+.+.|+-+|+..|...+.
T Consensus 28 ~ip~~~I~Rlar~~-Gv~rIS~da~~~l~~~le~fi~~I~~dA~~~a~ 74 (102)
T 1id3_B 28 GITKPAIRRLARRG-GVKRISGLIYEEVRAVLKSFLESVIRDSVTYTE 74 (102)
T ss_dssp GSCHHHHHHHHHHT-TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHc-CchhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 49999999999886 555699999999999999999999999988764
No 11
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=91.93 E-value=0.3 Score=35.01 Aligned_cols=49 Identities=14% Similarity=0.060 Sum_probs=41.5
Q ss_pred cCCChHHHHHHHHHhhc-CccCCccHHHHhhhhhHHHHHHHHHHHHHHHH
Q 030236 126 SALQKSNMRRLLVSITG-SQKISLPMTIVVCGIAKMFVGELVETGFCVNV 174 (181)
Q Consensus 126 S~f~K~~IKKLi~svtg-sQsVs~nv~IavaGiAKvFVGEIVE~Ar~Vq~ 174 (181)
..||++.|+|||...+. ...|+.....++.-.+.+||-.|.+.|..+..
T Consensus 7 ~~LP~a~i~ri~K~~~~~~~~is~dA~~~l~~a~e~Fi~~l~~~A~~~a~ 56 (93)
T 1n1j_A 7 IYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCH 56 (93)
T ss_dssp CCCCHHHHHHHHHHTSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCChhHHHHHHHHhCCccceeCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46999999999999853 23588888999999999999999999987653
No 12
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=91.17 E-value=0.44 Score=34.81 Aligned_cols=49 Identities=8% Similarity=0.304 Sum_probs=41.4
Q ss_pred hcCCChHHHHHHHHHhhcCccCCccHHHHhhhhhHHHHHHHHHHHHHHH
Q 030236 125 RSALQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMFVGELVETGFCVN 173 (181)
Q Consensus 125 RS~f~K~~IKKLi~svtgsQsVs~nv~IavaGiAKvFVGEIVE~Ar~Vq 173 (181)
...||=+.|||||..---...|+....+.++...-+|+-+|++.|-.+.
T Consensus 9 ~~~fPvaRIkrimK~~~~~~~vs~~A~v~la~a~E~Fi~el~~~A~~~a 57 (98)
T 1jfi_A 9 NARFPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVT 57 (98)
T ss_dssp -CCCCHHHHHHHHTTSTTCCCBCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHcCccccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4679999999999875433568999999999999999999999997764
No 13
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=91.12 E-value=0.33 Score=36.47 Aligned_cols=49 Identities=6% Similarity=0.083 Sum_probs=38.1
Q ss_pred HhcCCChHHHHHHHHHhhcCccCCccHHHHhhhhhHHHHHHHHHHHHHHH
Q 030236 124 RRSALQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMFVGELVETGFCVN 173 (181)
Q Consensus 124 RRS~f~K~~IKKLi~svtgsQsVs~nv~IavaGiAKvFVGEIVE~Ar~Vq 173 (181)
|-..||++.|+||+... |...|+..+.-++..+.+.|+-.|...|....
T Consensus 4 ~d~~lP~a~I~Ri~r~~-g~~rIS~~a~~~l~e~l~~f~~~v~~da~~~A 52 (111)
T 3b0c_T 4 REPEIASSLIKQIFSHY-VKTPVTRDAYKIVEKCSERYFKQISSDLEAYS 52 (111)
T ss_dssp ------CHHHHHHHHHH-HCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHC-CCCccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34579999999999887 55679999999999999999999998887654
No 14
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=90.57 E-value=0.67 Score=32.65 Aligned_cols=48 Identities=15% Similarity=0.113 Sum_probs=43.2
Q ss_pred cCCChHHHHHHHHHhhcCccCCccHHHHhhhhhHHHHHHHHHHHHHHHH
Q 030236 126 SALQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMFVGELVETGFCVNV 174 (181)
Q Consensus 126 S~f~K~~IKKLi~svtgsQsVs~nv~IavaGiAKvFVGEIVE~Ar~Vq~ 174 (181)
+.||...||+++.++ |-..+|+.++.+++--.-..+.||+..|..+++
T Consensus 5 s~lp~~~v~~iaes~-Gi~~lsddaa~~LA~dvEyr~~eI~qeA~kfmr 52 (70)
T 1taf_B 5 SSISAESMKVIAESI-GVGSLSDDAAKELAEDVSIKLKRIVQDAAKFMN 52 (70)
T ss_dssp CCCCHHHHHHHHHHT-TCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 579999999998775 666899999999999999999999999999875
No 15
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B
Probab=87.90 E-value=0.73 Score=35.40 Aligned_cols=49 Identities=14% Similarity=0.127 Sum_probs=39.2
Q ss_pred cCCChHHHHHHHHHhhc-CccCCccHHHHhhhhhHHHHHHHHHHHHHHHH
Q 030236 126 SALQKSNMRRLLVSITG-SQKISLPMTIVVCGIAKMFVGELVETGFCVNV 174 (181)
Q Consensus 126 S~f~K~~IKKLi~svtg-sQsVs~nv~IavaGiAKvFVGEIVE~Ar~Vq~ 174 (181)
..||++.|+|||..+.. ...|+.....+|+=.+-+||-.|...|.++..
T Consensus 8 ~~LP~A~I~rImK~~~pd~~~iS~dA~~~l~ka~e~FI~~lt~~A~~~a~ 57 (128)
T 2byk_B 8 LNLPNAVIGRLIKEALPESASVSKEARAAIARAASVFAIFVTSSSTALAH 57 (128)
T ss_dssp ---CCSHHHHHHHHHSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHhCcccceECHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46999999999997653 34588888999999999999999999987754
No 16
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=86.51 E-value=1.3 Score=36.18 Aligned_cols=48 Identities=4% Similarity=0.115 Sum_probs=42.3
Q ss_pred CCChHHHHHHHHHhhcCccCCccHHHHhhhhhHHHHHHHHHHHHHHHH
Q 030236 127 ALQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMFVGELVETGFCVNV 174 (181)
Q Consensus 127 ~f~K~~IKKLi~svtgsQsVs~nv~IavaGiAKvFVGEIVE~Ar~Vq~ 174 (181)
.||+++|+|||.+++.+..|+.-...+|.=.+-+||-.|--.|.++..
T Consensus 15 ~LP~A~V~RImK~alp~~rISkDA~~al~ec~~eFI~~LtseA~e~a~ 62 (179)
T 1jfi_B 15 TIPRAAINKMIKETLPNVRVANDARELVVNCCTEFIHLISSEANEICN 62 (179)
T ss_dssp CCCHHHHHHHHHHHSTTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHhCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 599999999999987555789889999999999999999999988754
No 17
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=85.20 E-value=1.2 Score=35.48 Aligned_cols=48 Identities=13% Similarity=0.165 Sum_probs=43.2
Q ss_pred cCCChHHHHHHHHHhhcCccCCccHHHHhhhhhHHHHHHHHHHHHHHH
Q 030236 126 SALQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMFVGELVETGFCVN 173 (181)
Q Consensus 126 S~f~K~~IKKLi~svtgsQsVs~nv~IavaGiAKvFVGEIVE~Ar~Vq 173 (181)
+.||++.|+|||...+|...||.-....++-..+.|+-.|...|.+..
T Consensus 3 ~~LP~a~V~Riik~~lg~~rVS~dA~~~l~~~l~~f~~~i~~~A~~~a 50 (154)
T 1f1e_A 3 VELPKAAIERIFRQGIGERRLSQDAKDTIYDFVPTMAEYVANAAKSVL 50 (154)
T ss_dssp -CCCHHHHHHHHHTTSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCccHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 479999999999998887789999999999999999999999998765
No 18
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=84.98 E-value=0.47 Score=37.17 Aligned_cols=50 Identities=16% Similarity=0.254 Sum_probs=30.6
Q ss_pred HhcCCChHHHHHHHHHhhcCccCCccHHHHhhhhhHHHHHHHHHHHHHHH
Q 030236 124 RRSALQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMFVGELVETGFCVN 173 (181)
Q Consensus 124 RRS~f~K~~IKKLi~svtgsQsVs~nv~IavaGiAKvFVGEIVE~Ar~Vq 173 (181)
....||-+.|||||..---...|+....++|+-.+-+||-+|++.|..+.
T Consensus 16 ~~~~LPlaRIKrIMK~dpdv~~Is~eA~vliakA~ElFI~~Lt~~A~~~a 65 (140)
T 2byk_A 16 AETFLPLSRVRTIMKSSMDTGLITNEVLFLMTKCTELFVRHLAGAAYTEE 65 (140)
T ss_dssp -------------CCSSSSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHhcCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45679999999999875433458888889999999999999999998775
No 19
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=84.74 E-value=1.5 Score=35.04 Aligned_cols=46 Identities=17% Similarity=0.122 Sum_probs=42.3
Q ss_pred CCChHHHHHHHHHhhcCccCCccHHHHhhhhhHHHHHHHHHHHHHHH
Q 030236 127 ALQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMFVGELVETGFCVN 173 (181)
Q Consensus 127 ~f~K~~IKKLi~svtgsQsVs~nv~IavaGiAKvFVGEIVE~Ar~Vq 173 (181)
.||++.|+||+... |...||......++.+.+.|+-+|...|.+..
T Consensus 82 ~lP~a~V~Ri~k~~-g~~RVS~~A~~~l~~~le~f~~~I~~~A~~~a 127 (154)
T 1f1e_A 82 LFGRATVRRILKRA-GIERASSDAVDLYNKLICRATEELGEKAAEYA 127 (154)
T ss_dssp CCCHHHHHHHHHHT-TCCEECHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCccHHHHHHHHc-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 59999999999998 77889999999999999999999999998765
No 20
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=82.73 E-value=2.9 Score=30.11 Aligned_cols=49 Identities=16% Similarity=0.221 Sum_probs=40.7
Q ss_pred hcCCChHHHHHHHHHhhcC--ccCCccHHHHhhhhhHHHHHHHHHHHHHHH
Q 030236 125 RSALQKSNMRRLLVSITGS--QKISLPMTIVVCGIAKMFVGELVETGFCVN 173 (181)
Q Consensus 125 RS~f~K~~IKKLi~svtgs--QsVs~nv~IavaGiAKvFVGEIVE~Ar~Vq 173 (181)
...|++..|.||+...... .+++...+-+++-+-++||=|-|.+|....
T Consensus 6 ~~~~~~~lI~ril~~~f~~~ktrI~~dAl~l~aeyl~iFV~EAv~RA~~~a 56 (81)
T 3b0b_C 6 EGGFRKETVERLLRLHFRDGRTRVNGDALLLMAELLKVFVREAAARAARQA 56 (81)
T ss_dssp -CCCCHHHHHHHHHHHCCSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999886653 347888899999999999999999887653
No 21
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=79.95 E-value=4.8 Score=28.73 Aligned_cols=50 Identities=14% Similarity=0.258 Sum_probs=44.6
Q ss_pred CCChHHHHHHHHHhhcCccCCccHHHHhhhhhHHHHHHHHHHHHHHHHHh
Q 030236 127 ALQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMFVGELVETGFCVNVTQ 176 (181)
Q Consensus 127 ~f~K~~IKKLi~svtgsQsVs~nv~IavaGiAKvFVGEIVE~Ar~Vq~ew 176 (181)
-|+|..+..|+.++-++..+.+.+-=++.-||=-||-.+++.|..+.+.+
T Consensus 5 vl~k~~L~~Lv~~idp~~~ld~~vee~ll~lADdFV~~V~~~ac~lAKhR 54 (76)
T 1h3o_B 5 VLTKKKLQDLVREVDPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHR 54 (76)
T ss_dssp SSCHHHHHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 37899999999999998888888999999999999999999998877643
No 22
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*
Probab=75.03 E-value=5.8 Score=30.28 Aligned_cols=47 Identities=11% Similarity=0.184 Sum_probs=41.9
Q ss_pred CCChHHHHHHHHHhhcCccCCccHHHHhhhhhHHHHHHHHHHHHHHH
Q 030236 127 ALQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMFVGELVETGFCVN 173 (181)
Q Consensus 127 ~f~K~~IKKLi~svtgsQsVs~nv~IavaGiAKvFVGEIVE~Ar~Vq 173 (181)
.||-+.|.|+|....+...|+....+.++++--.|+-||.|.|....
T Consensus 23 ~fPV~ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A 69 (123)
T 2nqb_C 23 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAA 69 (123)
T ss_dssp SSCHHHHHHHHHHTTSCSEECTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eccHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48999999999998777789999999999999999999999987654
No 23
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...
Probab=74.92 E-value=5.8 Score=30.56 Aligned_cols=47 Identities=11% Similarity=0.181 Sum_probs=42.1
Q ss_pred CCChHHHHHHHHHhhcCccCCccHHHHhhhhhHHHHHHHHHHHHHHH
Q 030236 127 ALQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMFVGELVETGFCVN 173 (181)
Q Consensus 127 ~f~K~~IKKLi~svtgsQsVs~nv~IavaGiAKvFVGEIVE~Ar~Vq 173 (181)
.||-+.|.|+|....+...|+....+.++++--.|+-||+|.|....
T Consensus 25 qfPV~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A 71 (129)
T 1tzy_A 25 QFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAA 71 (129)
T ss_dssp SSCHHHHHHHHHHTTSSSEECTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eccHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999997777789999999999999999999999987654
No 24
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1
Probab=73.40 E-value=6.8 Score=31.13 Aligned_cols=47 Identities=13% Similarity=0.188 Sum_probs=41.8
Q ss_pred CCChHHHHHHHHHhhcCccCCccHHHHhhhhhHHHHHHHHHHHHHHH
Q 030236 127 ALQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMFVGELVETGFCVN 173 (181)
Q Consensus 127 ~f~K~~IKKLi~svtgsQsVs~nv~IavaGiAKvFVGEIVE~Ar~Vq 173 (181)
.||=+.|.|+|....+.+.|+....+.++++--.|+-||+|.|....
T Consensus 44 qFPVgrI~R~LK~~~~a~RVs~~A~VyLAAVLEYL~aEILelAgn~A 90 (149)
T 2f8n_K 44 QFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAA 90 (149)
T ss_dssp SSCHHHHHHHHHHTTSCSEECTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eccHHHHHHHHHccccccccCcCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47889999999998777789999999999999999999999987654
No 25
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=71.95 E-value=6.8 Score=30.22 Aligned_cols=47 Identities=15% Similarity=0.185 Sum_probs=41.7
Q ss_pred CCChHHHHHHHHHhhcCccCCccHHHHhhhhhHHHHHHHHHHHHHHH
Q 030236 127 ALQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMFVGELVETGFCVN 173 (181)
Q Consensus 127 ~f~K~~IKKLi~svtgsQsVs~nv~IavaGiAKvFVGEIVE~Ar~Vq 173 (181)
.||-+.|+|+|....+...|+....+.++++--.|+-||.|.|....
T Consensus 25 qfPV~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A 71 (131)
T 1id3_C 25 TFPVGRVHRLLRRGNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAA 71 (131)
T ss_dssp SSCHHHHHHHHHTTCSCSEECSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecCHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48999999999987677789999999999999999999999987654
No 26
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=70.26 E-value=9 Score=27.85 Aligned_cols=48 Identities=25% Similarity=0.212 Sum_probs=39.5
Q ss_pred cCCChHHHHHHHHHhhcC--ccCCccHHHHhhhhhHHHHHHHHHHHHHHH
Q 030236 126 SALQKSNMRRLLVSITGS--QKISLPMTIVVCGIAKMFVGELVETGFCVN 173 (181)
Q Consensus 126 S~f~K~~IKKLi~svtgs--QsVs~nv~IavaGiAKvFVGEIVE~Ar~Vq 173 (181)
..||+..|.||+...... .+++.....+++-+-++||=|-|.+|....
T Consensus 11 ~~i~~~li~ril~~~F~~~kTkIs~dAl~l~aeyl~iFV~EAv~RA~~~a 60 (84)
T 4dra_E 11 SGFRKELVSRLLHLHFKDDKTKVSGDALQLMVELLKVFVVEAAVRGVRQA 60 (84)
T ss_dssp CCCCHHHHHHHHHTTCSSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 479999999999865532 347888999999999999999999887643
No 27
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C
Probab=65.85 E-value=12 Score=28.28 Aligned_cols=47 Identities=11% Similarity=0.185 Sum_probs=40.6
Q ss_pred CCChHHHHHHHHHhhcCccCCccHHHHhhhhhHHHHHHHHHHHHHHH
Q 030236 127 ALQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMFVGELVETGFCVN 173 (181)
Q Consensus 127 ~f~K~~IKKLi~svtgsQsVs~nv~IavaGiAKvFVGEIVE~Ar~Vq 173 (181)
.||=+.|.|++......+.|+....+.++++--.|.-||.|.|....
T Consensus 22 qfPV~ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A 68 (120)
T 2f8n_G 22 IFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAVNAA 68 (120)
T ss_dssp SSCHHHHHHHHHHHSSSCEECTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHcCccccccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48889999999987545679999999999999999999999987654
No 28
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1
Probab=57.17 E-value=22 Score=27.19 Aligned_cols=47 Identities=17% Similarity=0.204 Sum_probs=39.6
Q ss_pred CCChHHHHHHHHHhhcC-ccCCccHHHHhhhhhHHHHHHHHHHHHHHH
Q 030236 127 ALQKSNMRRLLVSITGS-QKISLPMTIVVCGIAKMFVGELVETGFCVN 173 (181)
Q Consensus 127 ~f~K~~IKKLi~svtgs-QsVs~nv~IavaGiAKvFVGEIVE~Ar~Vq 173 (181)
.||-+.|.|+|...... ..|+....+.++++--.|.-||+|.|-...
T Consensus 27 qfPV~ri~R~Lk~~~~a~~RV~~~A~VyLaAvLEyL~aEIlelAgn~A 74 (128)
T 1f66_C 27 QFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNAS 74 (128)
T ss_dssp SSCHHHHHHHHHHTSCSSCEECTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHcccchhhccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999886433 378999999999999999999999987654
No 29
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=46.13 E-value=44 Score=26.73 Aligned_cols=47 Identities=11% Similarity=0.191 Sum_probs=40.3
Q ss_pred CCChHHHHHHHHHhhcC-ccCCccHHHHhhhhhHHHHHHHHHHHHHHH
Q 030236 127 ALQKSNMRRLLVSITGS-QKISLPMTIVVCGIAKMFVGELVETGFCVN 173 (181)
Q Consensus 127 ~f~K~~IKKLi~svtgs-QsVs~nv~IavaGiAKvFVGEIVE~Ar~Vq 173 (181)
.||=+.|+|++....+. ..|+....+.++++--.|+.||.|.|-...
T Consensus 105 ~fPv~ri~R~lk~~~~a~~Rv~~~A~vyLaavLEyl~~eIlelA~n~a 152 (192)
T 2jss_A 105 QFPVGRIKRYLKRHATGRTRVGSKAAIYLTAVLEYLTAEVLELAGNAA 152 (192)
T ss_dssp CSCHHHHHHHHHHTTCSSCCCCTTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHhcCccccccccChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48889999999986554 479999999999999999999999886653
No 30
>3v9r_B MHF2, uncharacterized protein YDL160C-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=35.50 E-value=54 Score=24.18 Aligned_cols=43 Identities=21% Similarity=0.325 Sum_probs=33.4
Q ss_pred CChHHHHHHHHHhhcCc--cCCccHHHHhhhhhHHHHHHHHHHHH
Q 030236 128 LQKSNMRRLLVSITGSQ--KISLPMTIVVCGIAKMFVGELVETGF 170 (181)
Q Consensus 128 f~K~~IKKLi~svtgsQ--sVs~nv~IavaGiAKvFVGEIVE~Ar 170 (181)
+|+..|-||+....... +|+...+.+++-+-++||-|-|-+|.
T Consensus 2 ip~~llaRIL~~~F~~~kTrIt~da~~lv~kY~diFVrEAv~Rs~ 46 (88)
T 3v9r_B 2 LSKEALIKILSQNEGGNDMKIADEVVPMIQKYLDIFIDEAVLRSL 46 (88)
T ss_dssp CCSHHHHHHHTTTSCSSCCEECTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCCceecHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888999887443322 36777888899999999999998774
No 31
>1dum_A Magainin 2; antibiotic, dimer, amphipathic helix, membrane, vesicle, bilayer, antimicrobial protein; NMR {Synthetic} SCOP: j.4.1.1 PDB: 2mag_A
Probab=32.17 E-value=20 Score=21.00 Aligned_cols=13 Identities=31% Similarity=0.580 Sum_probs=10.6
Q ss_pred hhhhHHHHHHHHH
Q 030236 155 CGIAKMFVGELVE 167 (181)
Q Consensus 155 aGiAKvFVGEIVE 167 (181)
.-|+|-|||||..
T Consensus 10 kkfgkawvgeimn 22 (26)
T 1dum_A 10 KKFGKAWVGEIMN 22 (26)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHhHHHHHHHHh
Confidence 4689999999864
No 32
>1f8v_D Mature capsid protein gamma; nodavirus, coat protein, nucleoprotein, protein-RNA interactions, RNA duplex, RNA CAGE, gamma polypeptide; 3.00A {Pariacato virus} SCOP: b.121.4.4
Probab=28.70 E-value=26 Score=22.61 Aligned_cols=26 Identities=27% Similarity=0.516 Sum_probs=9.8
Q ss_pred HHHHHHHHhhcCcc-CCccHHHHhhhh
Q 030236 132 NMRRLLVSITGSQK-ISLPMTIVVCGI 157 (181)
Q Consensus 132 ~IKKLi~svtgsQs-Vs~nv~IavaGi 157 (181)
.||+|+++.++..| ||-||-++-+|+
T Consensus 6 rVk~ilks~l~~aS~iPGPVG~~asGi 32 (40)
T 1f8v_D 6 GVLRVLNQISGTLSVIPGPVGTISAGV 32 (40)
T ss_dssp HHHHHHHHTCCC---------------
T ss_pred HHHHHHHHHHHHHhcCCCchhHHHHhH
Confidence 58999999877554 677887776665
No 33
>1nov_D Nodamura virus coat proteins; insect virus, icosahedral VIRU; 3.50A {Nodamura virus}
Probab=28.23 E-value=37 Score=22.30 Aligned_cols=28 Identities=25% Similarity=0.304 Sum_probs=19.6
Q ss_pred HHHHHHHHhhcCcc-CCccHHHHhhhhhH
Q 030236 132 NMRRLLVSITGSQK-ISLPMTIVVCGIAK 159 (181)
Q Consensus 132 ~IKKLi~svtgsQs-Vs~nv~IavaGiAK 159 (181)
.||+|+++.++..| ||-||-++-+|+.-
T Consensus 6 rVk~ilks~l~~aS~iPGPVG~~asGi~g 34 (44)
T 1nov_D 6 RVRSILKSGLNFASTIPGPVGVAATGIKG 34 (44)
T ss_pred HHHHHHHHHHHHHhcCCCchhHHHHhHHH
Confidence 47888888766443 78888777666643
No 34
>2beq_D E2 glycoprotein; viral protein, coiled coil, membrane fusion, viral entry, envelope protein, signal, transmembrane, virulence; 1.6A {Sars coronavirus PUMC03} SCOP: h.3.3.1 PDB: 1zv7_A
Probab=27.58 E-value=45 Score=22.11 Aligned_cols=24 Identities=8% Similarity=0.494 Sum_probs=18.6
Q ss_pred HHHHHHHHHhcCC-----HHHHHHHHHHH
Q 030236 101 KMAKMQAILNQFT-----EDQMNRYESFR 124 (181)
Q Consensus 101 ~~~km~~Ll~~fd-----eEQldRYE~fR 124 (181)
+..+++.++++++ =++++|||.|=
T Consensus 18 Ei~~Lq~~I~~LN~slIDLe~Ln~~E~yi 46 (48)
T 2beq_D 18 EIDRLNEVAKNLNESLIDLQELGKYEQYI 46 (48)
T ss_dssp HHHHHHHHHTTGGGGEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHccHHHhchhheee
Confidence 4567788887764 58999999983
No 35
>3zed_D Capsid protein VP3; viral protein, virus morphogenesis; 2.20A {Infectious pancreatic necrosis virus}
Probab=26.47 E-value=66 Score=27.55 Aligned_cols=45 Identities=20% Similarity=0.353 Sum_probs=27.3
Q ss_pred HHHHHHhcCCChH----HHHHHHHHhhcCccCCccHHHHhhhhhHHHHH
Q 030236 119 RYESFRRSALQKS----NMRRLLVSITGSQKISLPMTIVVCGIAKMFVG 163 (181)
Q Consensus 119 RYE~fRRS~f~K~----~IKKLi~svtgsQsVs~nv~IavaGiAKvFVG 163 (181)
-|+-|-+.-..|. .|+||.+++.|+..--+..--.+-.|++||+-
T Consensus 137 ~y~dyv~~~~~~p~~~~kirRla~svyg~p~Q~papeef~~ava~v~~e 185 (242)
T 3zed_D 137 EYEDYVRKPITRPTDMDKIRRLANSVYGLPHQEPAPDDFYQAVVEVFAE 185 (242)
T ss_pred cHHHhhccccCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHH
Confidence 3444655555554 79999999998643111122234567788863
No 36
>1ojh_A NBLA; degradation protein, phycobilisome degradation, protein BIND; HET: MSE; 1.80A {Anabaena SP} SCOP: a.214.1.1
Probab=24.38 E-value=64 Score=22.54 Aligned_cols=41 Identities=12% Similarity=0.298 Sum_probs=34.4
Q ss_pred HHHHHHHhcCCHHHHHHH--HHHHhcCCChHHHHHHHHHhhcC
Q 030236 103 AKMQAILNQFTEDQMNRY--ESFRRSALQKSNMRRLLVSITGS 143 (181)
Q Consensus 103 ~km~~Ll~~fdeEQldRY--E~fRRS~f~K~~IKKLi~svtgs 143 (181)
+.++--+..||.||...| +.||..=+..+.+|.||.+..|-
T Consensus 16 ~~~~~qv~~ls~EQaqe~Lve~~rQmMikeN~~k~liK~~w~l 58 (65)
T 1ojh_A 16 RSFATQVQNMSHDQAKDFLVKLYEQMVVREATYQELLKHQWGL 58 (65)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 456667999999999998 78999999999999999887663
No 37
>1mfq_C SRP54, signal recognition particle 54KDA protein; RNA-protein complex, A-minor motif, 3-helix junction, signaling protein/RNA complex; HET: CCC; 3.10A {Homo sapiens} SCOP: a.36.1.1
Probab=23.98 E-value=1.1e+02 Score=23.60 Aligned_cols=38 Identities=16% Similarity=0.440 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHH---HHHHHhcCCChHHHHHHHHH
Q 030236 99 PAKMAKMQAILNQFTEDQMNR---YESFRRSALQKSNMRRLLVS 139 (181)
Q Consensus 99 ~~~~~km~~Ll~~fdeEQldR---YE~fRRS~f~K~~IKKLi~s 139 (181)
+.+..++.+++.+||+++++. -+.+.. +-+.+|||...
T Consensus 57 e~~lkr~eaII~SMT~~Er~n~~~P~ii~~---~~SRk~RIA~G 97 (129)
T 1mfq_C 57 MARLKKLMTIMDSMNDQELDSTDGAKVFSK---QPGRIQRVARG 97 (129)
T ss_dssp HHHHHHHHHHHTTSCHHHHTCTTHHHHHHH---CTHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHhcCCCcccccC---ChHHHHHHHcc
Confidence 445678999999999999987 777732 33556776543
No 38
>3nrw_A Phage integrase/site-specific recombinase; alpha-helical domain, structural genomics, PSI-2, protein ST initiative; 1.70A {Haloarcula marismortui}
Probab=23.66 E-value=1.2e+02 Score=20.49 Aligned_cols=31 Identities=19% Similarity=0.482 Sum_probs=21.9
Q ss_pred HhcCCHHHHHHHHHHHhc-CCChHHHHHHHHH
Q 030236 109 LNQFTEDQMNRYESFRRS-ALQKSNMRRLLVS 139 (181)
Q Consensus 109 l~~fdeEQldRYE~fRRS-~f~K~~IKKLi~s 139 (181)
+..++.+.+.+|-.|++. ++..+.|++.+..
T Consensus 51 l~~it~~~i~~y~~~l~~~~~s~~Ti~~~ls~ 82 (117)
T 3nrw_A 51 MRELTGWKLDEYETFRRGSDVSPATLNGEMQT 82 (117)
T ss_dssp GGGCCHHHHHHHHHHHHTSSCCHHHHHHHHHH
T ss_pred hHHCCHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 346788888888888764 5777777766543
No 39
>3iz5_t 60S acidic ribosomal protein P11 - P1 (L12P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_t
Probab=21.47 E-value=20 Score=27.01 Aligned_cols=13 Identities=31% Similarity=0.544 Sum_probs=0.0
Q ss_pred ccccccccccccc
Q 030236 77 EYDEEDDENVDVE 89 (181)
Q Consensus 77 eedeeeed~~d~~ 89 (181)
|+.||.||+|-+.
T Consensus 95 ee~EEsddDmGfg 107 (110)
T 3iz5_t 95 EAKEESDDDMGFS 107 (110)
T ss_dssp -------------
T ss_pred ccccccccccccc
Confidence 4445555555543
No 40
>3izc_t 60S acidic ribosomal protein RPP11 (P1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_t
Probab=21.45 E-value=20 Score=26.80 Aligned_cols=12 Identities=33% Similarity=0.584 Sum_probs=0.0
Q ss_pred cccccccccccc
Q 030236 77 EYDEEDDENVDV 88 (181)
Q Consensus 77 eedeeeed~~d~ 88 (181)
++.||.||+|-+
T Consensus 91 e~~EEsddDmGf 102 (106)
T 3izc_t 91 EAKEESDDDMGF 102 (106)
T ss_dssp ------------
T ss_pred cccccccccccc
Confidence 344455555544
No 41
>2qxf_A Exodeoxyribonuclease I; alpha-beta domain, DNAQ superfamily, SH3-like domain, produc structure, DNA damage, DNA repair, exonuclease; HET: TMP; 1.50A {Escherichia coli} SCOP: c.55.3.5 PDB: 1fxx_A* 3c94_A 3c95_A 3hl8_A* 3hp9_A*
Probab=20.20 E-value=74 Score=28.81 Aligned_cols=31 Identities=10% Similarity=0.188 Sum_probs=26.2
Q ss_pred hcCCHHHHHHHHHHHhcCCChHHHHHHHHHh
Q 030236 110 NQFTEDQMNRYESFRRSALQKSNMRRLLVSI 140 (181)
Q Consensus 110 ~~fdeEQldRYE~fRRS~f~K~~IKKLi~sv 140 (181)
..|++++..|+..||+..|...++....+.+
T Consensus 417 ~~l~~~e~~~w~~~~~~~l~~~~~~~~~~~~ 447 (482)
T 2qxf_A 417 GTLDYAEQQRWLEHRRQVFTPEFLQGYADEL 447 (482)
T ss_dssp GGCCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 5799999999999999999988777766554
No 42
>3izc_v 60S acidic ribosomal protein (P2); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_v
Probab=20.14 E-value=22 Score=26.56 Aligned_cols=12 Identities=33% Similarity=0.562 Sum_probs=0.0
Q ss_pred cccccccccccc
Q 030236 77 EYDEEDDENVDV 88 (181)
Q Consensus 77 eedeeeed~~d~ 88 (181)
|+.||.||+|-+
T Consensus 91 e~~EEsdddmGf 102 (106)
T 3izc_v 91 EAAEESDDDMGF 102 (106)
T ss_dssp ------------
T ss_pred ccccccccccCC
Confidence 344444555544
Done!