Query 030237
Match_columns 181
No_of_seqs 203 out of 832
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 17:12:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030237.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030237hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dfx_A Trans-acting T-cell-spe 99.8 1E-19 3.5E-24 125.9 5.4 57 87-146 5-61 (63)
2 2vut_I AREA, nitrogen regulato 99.8 2.1E-19 7.1E-24 115.7 3.8 42 90-134 2-43 (43)
3 1gnf_A Transcription factor GA 99.8 3.8E-19 1.3E-23 116.0 4.9 44 88-134 3-46 (46)
4 4gat_A Nitrogen regulatory pro 99.8 4.5E-19 1.5E-23 123.6 4.8 55 88-145 8-62 (66)
5 2kae_A GATA-type transcription 99.7 2.3E-18 7.9E-23 121.6 -0.7 50 87-138 6-55 (71)
6 4hc9_A Trans-acting T-cell-spe 99.6 1E-16 3.6E-21 122.3 5.2 55 88-145 58-112 (115)
7 4hc9_A Trans-acting T-cell-spe 99.5 7.1E-15 2.4E-19 112.2 6.7 66 88-160 4-69 (115)
8 3ogl_Q JAZ1 incomplete degron 95.0 0.012 4.1E-07 32.0 1.9 17 21-37 4-20 (21)
9 3ogk_Q JAZ1 incomplete degron 94.7 0.011 3.7E-07 32.6 1.2 18 23-40 1-18 (22)
10 3cw2_K Translation initiation 61.4 3.1 0.00011 32.1 1.5 30 89-121 103-132 (139)
11 1dl6_A Transcription factor II 61.3 5.8 0.0002 25.8 2.6 33 88-125 10-42 (58)
12 2d74_B Translation initiation 56.4 3.4 0.00012 32.2 1.0 38 90-137 105-142 (148)
13 1nee_A EIF-2-beta, probable tr 53.7 3.2 0.00011 31.9 0.4 29 90-121 103-131 (138)
14 1k81_A EIF-2-beta, probable tr 53.1 1.4 4.8E-05 26.4 -1.4 29 91-122 2-30 (36)
15 2crw_A ARF GAP 3, ADP-ribosyla 52.8 9.5 0.00033 29.6 3.0 39 87-129 27-65 (149)
16 2owa_A Arfgap-like finger doma 51.9 8.6 0.0003 29.4 2.6 38 88-129 35-72 (138)
17 2iqj_A Stromal membrane-associ 51.6 8.4 0.00029 29.3 2.5 37 88-128 26-62 (134)
18 2crr_A Stromal membrane-associ 50.6 9.3 0.00032 29.3 2.6 37 88-128 28-64 (141)
19 2b0o_E UPLC1; arfgap, structur 47.2 13 0.00044 30.5 3.1 38 87-128 40-77 (301)
20 2zjr_Z 50S ribosomal protein L 47.1 4.5 0.00015 26.8 0.2 26 86-122 27-52 (60)
21 2olm_A Nucleoporin-like protei 46.3 11 0.00036 28.9 2.3 37 88-128 24-60 (140)
22 3k7a_M Transcription initiatio 45.9 7.8 0.00027 33.2 1.7 32 88-123 20-52 (345)
23 1pft_A TFIIB, PFTFIIBN; N-term 45.8 4 0.00014 25.3 -0.2 31 89-124 5-35 (50)
24 3dwd_A ADP-ribosylation factor 42.5 17 0.00058 28.2 3.0 38 88-129 37-74 (147)
25 2p57_A GTPase-activating prote 42.0 10 0.00036 29.3 1.6 38 88-129 36-73 (144)
26 2yrk_A Zinc finger homeobox pr 39.0 6.6 0.00023 25.9 0.1 18 108-125 8-25 (55)
27 3sub_A ADP-ribosylation factor 39.0 18 0.00063 28.6 2.6 36 89-128 22-57 (163)
28 3v2d_5 50S ribosomal protein L 38.1 7 0.00024 25.9 0.1 25 87-122 28-52 (60)
29 3h0g_L DNA-directed RNA polyme 37.1 11 0.00036 25.4 0.9 36 86-128 18-53 (63)
30 2g2k_A EIF-5, eukaryotic trans 35.7 5.6 0.00019 31.7 -0.8 29 90-121 97-127 (170)
31 1twf_L ABC10-alpha, DNA-direct 35.2 8.2 0.00028 26.3 0.1 30 86-122 25-54 (70)
32 3o47_A ADP-ribosylation factor 34.3 18 0.00063 30.2 2.1 38 88-129 36-73 (329)
33 2cr8_A MDM4 protein; ZF-ranbp 32.3 21 0.00073 23.2 1.7 21 83-105 5-25 (53)
34 1ovx_A ATP-dependent CLP prote 30.6 29 0.00099 23.5 2.2 32 90-123 19-50 (67)
35 3cng_A Nudix hydrolase; struct 29.1 16 0.00054 27.8 0.7 31 89-121 3-33 (189)
36 2ds5_A CLPX, ATP-dependent CLP 28.7 38 0.0013 21.6 2.5 31 90-122 12-42 (51)
37 2e9h_A EIF-5, eukaryotic trans 28.6 8.7 0.0003 30.2 -0.8 29 90-121 104-134 (157)
38 4g92_A HAPB protein; transcrip 28.4 22 0.00077 24.0 1.3 25 41-65 37-62 (64)
39 1dcq_A PYK2-associated protein 27.7 36 0.0012 27.3 2.8 38 88-129 16-53 (278)
40 3k1f_M Transcription initiatio 27.2 17 0.00058 29.5 0.6 34 87-123 19-52 (197)
41 2ebq_A Nuclear pore complex pr 27.0 21 0.00073 22.5 1.0 27 85-121 7-33 (47)
42 4bbr_M Transcription initiatio 26.4 12 0.00042 32.2 -0.3 33 88-123 20-52 (345)
43 3jue_A Arfgap with coiled-coil 26.1 41 0.0014 28.7 3.0 37 87-127 43-79 (368)
44 2csy_A Zinc finger protein 183 24.5 1.4E+02 0.0047 19.2 4.8 39 85-127 11-49 (81)
45 3pwf_A Rubrerythrin; non heme 24.3 17 0.00057 28.4 0.1 26 88-122 137-162 (170)
46 3lju_X ARF-GAP with dual PH do 24.0 27 0.00094 30.3 1.4 33 89-125 34-66 (386)
47 1lko_A Rubrerythrin all-iron(I 23.8 10 0.00034 30.0 -1.3 27 88-122 154-180 (191)
48 2k1p_A Zinc finger RAN-binding 23.8 36 0.0012 19.5 1.5 25 87-121 4-28 (33)
49 2d9g_A YY1-associated factor 2 21.8 1.1E+02 0.0036 19.4 3.6 25 87-121 9-33 (53)
50 2e5r_A Dystrobrevin alpha; ZZ 21.3 1.1E+02 0.0038 19.8 3.7 35 87-121 9-43 (63)
No 1
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=99.78 E-value=1e-19 Score=125.86 Aligned_cols=57 Identities=32% Similarity=0.601 Sum_probs=50.1
Q ss_pred CCCccccccccCCCCCCccccCCCCCCccchhhhHHHHhcCCCCCCCccccCCCCCCCcC
Q 030237 87 PSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGALRDLGKKMEDQPLTPAEQ 146 (181)
Q Consensus 87 ~~~~~C~nC~~~~~~Tp~wRrgp~G~~~LCNaCGl~~~~~~~~r~~~~~~~~~~~~~~~~ 146 (181)
.....|+||+++ .||+||+||+|+ +|||||||||++|+++||+.++++.++....+.
T Consensus 5 ~~~~~C~~C~tt--~Tp~WR~gp~G~-~LCNACGl~~~~~~~~RP~~~~~~~i~~R~Rk~ 61 (63)
T 3dfx_A 5 RAGTSCANCQTT--TTTLWRRNANGD-PVCNACGLYYKLHNINRPLTMKKEGIQTRNRKM 61 (63)
T ss_dssp CTTCCCTTTCCS--CCSSCCCCTTSC-CCCHHHHHHHHHHSSCCCGGGCCSSCCCCC---
T ss_pred CCCCcCCCcCCC--CCCccCCCCCCC-chhhHHHHHHHHcCCCCCcCcCCCccccccCCC
Confidence 456789999998 999999999998 999999999999999999999998888766544
No 2
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=99.76 E-value=2.1e-19 Score=115.70 Aligned_cols=42 Identities=50% Similarity=0.991 Sum_probs=40.0
Q ss_pred ccccccccCCCCCCccccCCCCCCccchhhhHHHHhcCCCCCCCc
Q 030237 90 TSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGALRDLGK 134 (181)
Q Consensus 90 ~~C~nC~~~~~~Tp~wRrgp~G~~~LCNaCGl~~~~~~~~r~~~~ 134 (181)
..|+||+++ .||+||+||+|+ +|||||||||++|+++||+++
T Consensus 2 ~~C~~C~tt--~Tp~WR~gp~G~-~LCNaCGl~~k~~~~~RP~~l 43 (43)
T 2vut_I 2 TTCTNCFTQ--TTPLWRRNPEGQ-PLCNACGLFLKLHGVVRPLSL 43 (43)
T ss_dssp CCCSSSCCC--CCSCCEECTTSC-EECHHHHHHHHHHSSCCCCCC
T ss_pred CcCCccCCC--CCCccccCCCCC-cccHHHHHHHHHhCCCCCCCC
Confidence 579999998 999999999998 999999999999999999975
No 3
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=99.76 E-value=3.8e-19 Score=116.01 Aligned_cols=44 Identities=41% Similarity=0.866 Sum_probs=41.1
Q ss_pred CCccccccccCCCCCCccccCCCCCCccchhhhHHHHhcCCCCCCCc
Q 030237 88 SETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGALRDLGK 134 (181)
Q Consensus 88 ~~~~C~nC~~~~~~Tp~wRrgp~G~~~LCNaCGl~~~~~~~~r~~~~ 134 (181)
....|+||+++ .||+||+||+|+ +|||||||||++|+++||+++
T Consensus 3 ~~~~C~~C~tt--~Tp~WR~gp~G~-~LCNaCGl~~k~~~~~RP~~~ 46 (46)
T 1gnf_A 3 EARECVNCGAT--ATPLWRRDRTGH-YLCNACGLYHKMNGQNRPLIR 46 (46)
T ss_dssp CSCCCTTTCCC--CCSSCBCCTTCC-CBCSHHHHHHHHTCSCCCCCC
T ss_pred CCCCCCCcCCC--CCCcCccCCCCC-ccchHHHHHHHHcCCCCCCCC
Confidence 46789999998 999999999997 999999999999999999875
No 4
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=99.76 E-value=4.5e-19 Score=123.63 Aligned_cols=55 Identities=40% Similarity=0.739 Sum_probs=49.0
Q ss_pred CCccccccccCCCCCCccccCCCCCCccchhhhHHHHhcCCCCCCCccccCCCCCCCc
Q 030237 88 SETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGALRDLGKKMEDQPLTPAE 145 (181)
Q Consensus 88 ~~~~C~nC~~~~~~Tp~wRrgp~G~~~LCNaCGl~~~~~~~~r~~~~~~~~~~~~~~~ 145 (181)
....|+||+++ .||+||+||+|. +|||||||||++|+++||++++++.+......
T Consensus 8 ~~~~C~~C~t~--~Tp~WR~gp~G~-~LCNaCGl~~~~~~~~RP~~~k~~~ik~R~R~ 62 (66)
T 4gat_A 8 GPTTCTNCFTQ--TTPLWRRNPEGQ-PLCNACGLFLKLHGVVRPLSLKTDVIKKRNRN 62 (66)
T ss_dssp SSCCCTTTCCC--CCSSCEEETTTE-EECHHHHHHHHHHCSCCCGGGCCSCCCCCCCS
T ss_pred CCCCCCCCCCC--CCCcCCcCCCCC-CccHHHHHHHHHcCCCCchhhccccccccccC
Confidence 46899999998 999999999997 99999999999999999999998776654433
No 5
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=99.67 E-value=2.3e-18 Score=121.59 Aligned_cols=50 Identities=20% Similarity=0.311 Sum_probs=42.2
Q ss_pred CCCccccccccCCCCCCccccCCCCCCccchhhhHHHHhcCCCCCCCccccC
Q 030237 87 PSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGALRDLGKKMED 138 (181)
Q Consensus 87 ~~~~~C~nC~~~~~~Tp~wRrgp~G~~~LCNaCGl~~~~~~~~r~~~~~~~~ 138 (181)
.....|+||+++ .||+||+||.+..+|||||||||++|+++||++++.+.
T Consensus 6 ~~~~~C~nC~tt--~Tp~WRrg~~~~g~LCNACGl~~~~~~~~RP~~~~~~~ 55 (71)
T 2kae_A 6 KKSFQCSNCSVT--ETIRWRNIRSKEGIQCNACFIYQRKYNKTRPVTAVNKY 55 (71)
T ss_dssp --CCCCSSSCCS--CCSSCCCCSSSSCCCSSHHHHHHHHHHSCCCTHHHHHH
T ss_pred CCCCcCCccCCC--CCCccccCCCCCCccchHHHHHHHHhCCCCCcccchhh
Confidence 356899999998 99999995444449999999999999999999998754
No 6
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=99.64 E-value=1e-16 Score=122.34 Aligned_cols=55 Identities=33% Similarity=0.637 Sum_probs=49.1
Q ss_pred CCccccccccCCCCCCccccCCCCCCccchhhhHHHHhcCCCCCCCccccCCCCCCCc
Q 030237 88 SETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGALRDLGKKMEDQPLTPAE 145 (181)
Q Consensus 88 ~~~~C~nC~~~~~~Tp~wRrgp~G~~~LCNaCGl~~~~~~~~r~~~~~~~~~~~~~~~ 145 (181)
....|+||+++ .||+||+||+| .+|||||||||++|++.||++++++.++....+
T Consensus 58 ~~~~C~~C~t~--~tp~WRr~~~g-~~lCNaCgl~~~~~~~~rp~~~~~~~i~~r~r~ 112 (115)
T 4hc9_A 58 AGTSCANCQTT--TTTLWRRNANG-DPVCNACGLYYKLHNINRPLTMKKEGIQTRNRK 112 (115)
T ss_dssp TTCCCTTTCCS--CCSSCEECTTS-CEECHHHHHHHHHHSSCCCGGGCCSSCCCCC--
T ss_pred ccccCCCcCCC--CcceeEECCCC-CCcchHHHHHHHHhCCCCCccccccchhhcccc
Confidence 45899999998 99999999999 699999999999999999999999888766544
No 7
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=99.54 E-value=7.1e-15 Score=112.17 Aligned_cols=66 Identities=33% Similarity=0.624 Sum_probs=52.4
Q ss_pred CCccccccccCCCCCCccccCCCCCCccchhhhHHHHhcCCCCCCCccccCCCCCCCcCCCCCCCCCCCCCCC
Q 030237 88 SETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGALRDLGKKMEDQPLTPAEQGEGEVNDSDCGTAA 160 (181)
Q Consensus 88 ~~~~C~nC~~~~~~Tp~wRrgp~G~~~LCNaCGl~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (181)
....|+||+++ .||+||+||+|. +|||||||||++|+.+||+.+.+...... ........+|+++.
T Consensus 4 ~~~~C~~Cg~~--~Tp~WRr~~~g~-~lCnaCgl~~Kl~G~nRP~~KpKKR~~~~----~~~~~~C~~C~t~~ 69 (115)
T 4hc9_A 4 MGRECVNCGAT--STPLWRRDGTGH-YLCNACGLYHKMNGQNRPLIKPKRRLSAA----RRAGTSCANCQTTT 69 (115)
T ss_dssp --CCCTTTCCS--CCSSCEECTTSC-EECHHHHHHHHHHSSCCCCSSCCCCCCCC----CCTTCCCTTTCCSC
T ss_pred CCCCCCCCCCc--cCCcceECCCCC-CcCcchhhhhhhccccccccccccccccc----ccccccCCCcCCCC
Confidence 46889999997 999999999994 99999999999999999998766443321 22346788888766
No 8
>3ogl_Q JAZ1 incomplete degron peptide; leucine-rich repeats, ubiquitin ligase, SCF, protein binding; HET: 7JA; 3.18A {Arabidopsis thaliana} PDB: 3ogm_Q*
Probab=95.00 E-value=0.012 Score=31.99 Aligned_cols=17 Identities=59% Similarity=0.784 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHhhhhhh
Q 030237 21 PQRAASLDRFRQKRKER 37 (181)
Q Consensus 21 ~~r~a~~~r~rekr~~r 37 (181)
-.|.+||.||.||||+|
T Consensus 4 ~aRk~SLqRFleKRk~R 20 (21)
T 3ogl_Q 4 IARRASLHRFLEKRKDR 20 (26)
T ss_pred hhHHHHHHHHHHHhhcc
Confidence 46899999999999987
No 9
>3ogk_Q JAZ1 incomplete degron peptide; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana}
Probab=94.70 E-value=0.011 Score=32.57 Aligned_cols=18 Identities=56% Similarity=0.761 Sum_probs=15.4
Q ss_pred HHHHHHHHHhhhhhhccc
Q 030237 23 RAASLDRFRQKRKERCFD 40 (181)
Q Consensus 23 r~a~~~r~rekr~~r~f~ 40 (181)
|.+||.||.||||+|...
T Consensus 1 Rk~SLqRFleKRk~R~~~ 18 (22)
T 3ogk_Q 1 RRASLHRFLEKRKDRVTS 18 (26)
T ss_pred CchhHHHHHHHHHHHhhc
Confidence 568999999999999653
No 10
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C*
Probab=61.43 E-value=3.1 Score=32.06 Aligned_cols=30 Identities=27% Similarity=0.491 Sum_probs=21.3
Q ss_pred CccccccccCCCCCCccccCCCCCCccchhhhH
Q 030237 89 ETSCTHCGISSKSTPMMRRGPSGPRSLCNACGL 121 (181)
Q Consensus 89 ~~~C~nC~~~~~~Tp~wRrgp~G~~~LCNaCGl 121 (181)
-..|..|+.+ .|-+-+.+..- -.-|+|||-
T Consensus 103 yVlC~~C~sP--dT~l~k~~r~~-~l~C~ACGa 132 (139)
T 3cw2_K 103 YVECSTCKSL--DTILKKEKKSW-YIVCLACGA 132 (139)
T ss_dssp CSSCCSSSSS--CCCSCSSCSTT-TSSCCC---
T ss_pred eeECCCCCCc--CcEEEEeCCeE-EEEecCCCC
Confidence 3689999998 88888865443 478999996
No 11
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=61.28 E-value=5.8 Score=25.83 Aligned_cols=33 Identities=18% Similarity=0.484 Sum_probs=23.3
Q ss_pred CCccccccccCCCCCCccccCCCCCCccchhhhHHHHh
Q 030237 88 SETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWAN 125 (181)
Q Consensus 88 ~~~~C~nC~~~~~~Tp~wRrgp~G~~~LCNaCGl~~~~ 125 (181)
....|.+|+.. ++......|. ..|..|||-+.-
T Consensus 10 ~~~~Cp~C~~~----~lv~D~~~ge-~vC~~CGlVl~e 42 (58)
T 1dl6_A 10 PRVTCPNHPDA----ILVEDYRAGD-MICPECGLVVGD 42 (58)
T ss_dssp SCCSBTTBSSS----CCEECSSSCC-EECTTTCCEECC
T ss_pred ccccCcCCCCC----ceeEeCCCCe-EEeCCCCCEEec
Confidence 34579999863 3555556675 999999996643
No 12
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=56.44 E-value=3.4 Score=32.19 Aligned_cols=38 Identities=26% Similarity=0.541 Sum_probs=26.3
Q ss_pred ccccccccCCCCCCccccCCCCCCccchhhhHHHHhcCCCCCCCcccc
Q 030237 90 TSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGALRDLGKKME 137 (181)
Q Consensus 90 ~~C~nC~~~~~~Tp~wRrgp~G~~~LCNaCGl~~~~~~~~r~~~~~~~ 137 (181)
..|..|+.+ .|-+-+.+..- -.-|+|||- .+++.+.++
T Consensus 105 VlC~~C~sP--dT~L~k~~r~~-~l~C~ACGa-------~~~V~~~k~ 142 (148)
T 2d74_B 105 VICPVCGSP--DTKIIKRDRFH-FLKCEACGA-------ETPIQHLLE 142 (148)
T ss_dssp SSCSSSCCT--TCCCCBSSSSB-CCCCSSSCC-------CCCCCC---
T ss_pred EECCCCCCc--CcEEEEeCCEE-EEEecCCCC-------Cccccchhh
Confidence 579999998 88888765433 478999985 455655543
No 13
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=53.75 E-value=3.2 Score=31.93 Aligned_cols=29 Identities=31% Similarity=0.707 Sum_probs=23.2
Q ss_pred ccccccccCCCCCCccccCCCCCCccchhhhH
Q 030237 90 TSCTHCGISSKSTPMMRRGPSGPRSLCNACGL 121 (181)
Q Consensus 90 ~~C~nC~~~~~~Tp~wRrgp~G~~~LCNaCGl 121 (181)
..|..|+.+ .|-+-+.+..- -.-|+|||-
T Consensus 103 VlC~~C~sP--dT~l~k~~r~~-~l~C~ACGa 131 (138)
T 1nee_A 103 VICHECNRP--DTRIIREGRIS-LLKCEACGA 131 (138)
T ss_dssp HHHTCCSSC--SSCCEEETTTT-EEECSTTSC
T ss_pred EECCCCCCc--CcEEEEcCCeE-EEEccCCCC
Confidence 579999998 88888875433 478999985
No 14
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=53.06 E-value=1.4 Score=26.36 Aligned_cols=29 Identities=31% Similarity=0.728 Sum_probs=20.5
Q ss_pred cccccccCCCCCCccccCCCCCCccchhhhHH
Q 030237 91 SCTHCGISSKSTPMMRRGPSGPRSLCNACGLF 122 (181)
Q Consensus 91 ~C~nC~~~~~~Tp~wRrgp~G~~~LCNaCGl~ 122 (181)
.|..|+.+ .|-+-+.+..- -.-|+|||-.
T Consensus 2 lC~~C~~p--eT~l~~~~~~~-~l~C~aCG~~ 30 (36)
T 1k81_A 2 ICRECGKP--DTKIIKEGRVH-LLKCMACGAI 30 (36)
T ss_dssp CCSSSCSC--EEEEEEETTEE-EEEEETTTEE
T ss_pred CCcCCCCC--CcEEEEeCCcE-EEEhhcCCCc
Confidence 48899998 78787754322 2459999963
No 15
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=52.82 E-value=9.5 Score=29.63 Aligned_cols=39 Identities=26% Similarity=0.479 Sum_probs=32.4
Q ss_pred CCCccccccccCCCCCCccccCCCCCCccchhhhHHHHhcCCC
Q 030237 87 PSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGAL 129 (181)
Q Consensus 87 ~~~~~C~nC~~~~~~Tp~wRrgp~G~~~LCNaCGl~~~~~~~~ 129 (181)
+....|.+|+. .-|.|-.-.-| ..+|-.|.-..+.-|++
T Consensus 27 p~N~~CaDCga---~~P~WaS~n~G-vfiC~~CsgiHR~LG~h 65 (149)
T 2crw_A 27 PTNKVCFDCGA---KNPSWASITYG-VFLCIDCSGSHRSLGVH 65 (149)
T ss_dssp TTTSBCSSSCC---BSCCCEETTTT-EECCHHHHHHHHHHCTT
T ss_pred cCCCcCCCCcC---CCCCcEEeccC-EEEchhcchhhccCCCC
Confidence 35689999998 57999999899 49999998877777754
No 16
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}
Probab=51.90 E-value=8.6 Score=29.45 Aligned_cols=38 Identities=16% Similarity=0.290 Sum_probs=31.6
Q ss_pred CCccccccccCCCCCCccccCCCCCCccchhhhHHHHhcCCC
Q 030237 88 SETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGAL 129 (181)
Q Consensus 88 ~~~~C~nC~~~~~~Tp~wRrgp~G~~~LCNaCGl~~~~~~~~ 129 (181)
....|+.|+. .-|.|-.-.-| ..+|-.|.-..+.-|++
T Consensus 35 ~N~~CaDCga---~~P~WaS~n~G-vfiC~~CsgiHR~LG~h 72 (138)
T 2owa_A 35 ENRTCFDCES---RNPTWLSLSFA-VFICLNCSSDHRKMGVH 72 (138)
T ss_dssp GGGBCTTTCC---BSCCEEETTTT-EEECHHHHHHHHTTCTT
T ss_pred CCCcCCCCcC---CCCCeEEecCC-EEEhHhhhHHHhCCCCC
Confidence 4688999998 56999999999 49999998877776654
No 17
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}
Probab=51.62 E-value=8.4 Score=29.29 Aligned_cols=37 Identities=22% Similarity=0.403 Sum_probs=31.3
Q ss_pred CCccccccccCCCCCCccccCCCCCCccchhhhHHHHhcCC
Q 030237 88 SETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGA 128 (181)
Q Consensus 88 ~~~~C~nC~~~~~~Tp~wRrgp~G~~~LCNaCGl~~~~~~~ 128 (181)
....|++|+. .-|.|-.-.-| ..+|-.|.-..+.-|+
T Consensus 26 ~N~~CaDCg~---~~P~WaS~n~G-vfiC~~CsgiHR~lG~ 62 (134)
T 2iqj_A 26 DNKFCADCQS---KGPRWASWNIG-VFICIRCAGIHRNLGV 62 (134)
T ss_dssp GGGBCTTTCC---BSCCEEETTTT-EEECHHHHHHHHHHCT
T ss_pred CCCcCCcCcC---CCCCeEEecCC-EEEhHhhhHHHhcCCC
Confidence 4689999998 56999999999 4999999887777775
No 18
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=50.56 E-value=9.3 Score=29.29 Aligned_cols=37 Identities=22% Similarity=0.422 Sum_probs=31.0
Q ss_pred CCccccccccCCCCCCccccCCCCCCccchhhhHHHHhcCC
Q 030237 88 SETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGA 128 (181)
Q Consensus 88 ~~~~C~nC~~~~~~Tp~wRrgp~G~~~LCNaCGl~~~~~~~ 128 (181)
....|+.|+. .-|.|-.-.-| ..+|-.|.-..+.-|+
T Consensus 28 ~N~~CaDCga---~~P~WaS~n~G-vfiC~~CsgiHR~LG~ 64 (141)
T 2crr_A 28 DNKYCADCEA---KGPRWASWNIG-VFICIRCAGIHRNLGV 64 (141)
T ss_dssp GGSSCSSSCC---SSCCSEETTTT-EECCHHHHHHHHHHCT
T ss_pred cCCcCCCCCC---CCCCeEEeccC-eEEhhhhhHhHhcCCC
Confidence 4678999998 57999999899 4999999887777664
No 19
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=47.15 E-value=13 Score=30.46 Aligned_cols=38 Identities=24% Similarity=0.538 Sum_probs=30.8
Q ss_pred CCCccccccccCCCCCCccccCCCCCCccchhhhHHHHhcCC
Q 030237 87 PSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGA 128 (181)
Q Consensus 87 ~~~~~C~nC~~~~~~Tp~wRrgp~G~~~LCNaCGl~~~~~~~ 128 (181)
+....|..|+. .-|.|-.-.-| ..+|-.|--..+.-|+
T Consensus 40 ~~n~~c~dc~~---~~p~w~s~~~g-~~~c~~cs~~hr~lg~ 77 (301)
T 2b0o_E 40 PGNSQCCDCGA---ADPTWLSTNLG-VLTCIQCSGVHRELGV 77 (301)
T ss_dssp TTTTBCTTTCC---BSCCEEETTTT-EEECHHHHHHHHHHCT
T ss_pred CCCCcCCCCCC---CCCCeEEeecC-eEEcHHHHHHHHhhCC
Confidence 56789999998 46999999999 4999999665555554
No 20
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=47.13 E-value=4.5 Score=26.85 Aligned_cols=26 Identities=27% Similarity=0.779 Sum_probs=19.4
Q ss_pred CCCCccccccccCCCCCCccccCCCCCCccchhhhHH
Q 030237 86 SPSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLF 122 (181)
Q Consensus 86 ~~~~~~C~nC~~~~~~Tp~wRrgp~G~~~LCNaCGl~ 122 (181)
.+....|.+||.. --++.+|-.||.|
T Consensus 27 ~p~l~~c~~cG~~-----------~~pH~vc~~CG~Y 52 (60)
T 2zjr_Z 27 APNLTECPQCHGK-----------KLSHHICPNCGYY 52 (60)
T ss_dssp CCCCEECTTTCCE-----------ECTTBCCTTTCBS
T ss_pred CCCceECCCCCCE-----------eCCceEcCCCCcC
Confidence 4567899999974 2345899999954
No 21
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=46.33 E-value=11 Score=28.91 Aligned_cols=37 Identities=16% Similarity=0.364 Sum_probs=30.3
Q ss_pred CCccccccccCCCCCCccccCCCCCCccchhhhHHHHhcCC
Q 030237 88 SETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGA 128 (181)
Q Consensus 88 ~~~~C~nC~~~~~~Tp~wRrgp~G~~~LCNaCGl~~~~~~~ 128 (181)
....|++|+. .-|.|-.-.-| ..+|-.|.-..+.-|+
T Consensus 24 ~N~~CaDCg~---~~P~WaS~n~G-vfiC~~CsgiHR~LG~ 60 (140)
T 2olm_A 24 HNRKCFDCDQ---RGPTYVNMTVG-SFVCTSCSGSLRGLNP 60 (140)
T ss_dssp GGGSCTTTCS---SCCCEEETTTT-EEECHHHHHHHTTSSS
T ss_pred CCCcCCCCCC---CCCCceeeccC-EEEchhccchhccCCC
Confidence 3678999998 57999999999 4999999876666554
No 22
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=45.92 E-value=7.8 Score=33.22 Aligned_cols=32 Identities=28% Similarity=0.735 Sum_probs=21.9
Q ss_pred CCccccccccCCCCCC-ccccCCCCCCccchhhhHHH
Q 030237 88 SETSCTHCGISSKSTP-MMRRGPSGPRSLCNACGLFW 123 (181)
Q Consensus 88 ~~~~C~nC~~~~~~Tp-~wRrgp~G~~~LCNaCGl~~ 123 (181)
....|.+|+.+ +| .-..-..|. .+|..||+-+
T Consensus 20 ~~~~Cp~Cg~~---~~~iv~D~~~G~-~vC~~CG~Vl 52 (345)
T 3k7a_M 20 IVLTCPECKVY---PPKIVERFSEGD-VVCALCGLVL 52 (345)
T ss_dssp CCCCCSTTCCS---CCCCCCCSSSCS-CCCSSSCCCC
T ss_pred CCCcCcCCCCC---CCceEEECCCCC-EecCCCCeEc
Confidence 35679999983 33 334445675 8999999944
No 23
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=45.76 E-value=4 Score=25.33 Aligned_cols=31 Identities=19% Similarity=0.599 Sum_probs=20.0
Q ss_pred CccccccccCCCCCCccccCCCCCCccchhhhHHHH
Q 030237 89 ETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWA 124 (181)
Q Consensus 89 ~~~C~nC~~~~~~Tp~wRrgp~G~~~LCNaCGl~~~ 124 (181)
...|.+|+. +++-.....| ...|..||+-|.
T Consensus 5 ~~~CP~C~~----~~l~~d~~~g-elvC~~CG~v~~ 35 (50)
T 1pft_A 5 QKVCPACES----AELIYDPERG-EIVCAKCGYVIE 35 (50)
T ss_dssp CCSCTTTSC----CCEEEETTTT-EEEESSSCCBCC
T ss_pred cEeCcCCCC----cceEEcCCCC-eEECcccCCccc
Confidence 457999976 2343333445 489999998553
No 24
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens}
Probab=42.52 E-value=17 Score=28.23 Aligned_cols=38 Identities=21% Similarity=0.368 Sum_probs=31.6
Q ss_pred CCccccccccCCCCCCccccCCCCCCccchhhhHHHHhcCCC
Q 030237 88 SETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGAL 129 (181)
Q Consensus 88 ~~~~C~nC~~~~~~Tp~wRrgp~G~~~LCNaCGl~~~~~~~~ 129 (181)
....|..|+. .-|.|-.-.-| ..||-.|.-..+.-|+.
T Consensus 37 ~N~~CaDCga---~~P~WaS~nlG-vfiC~~CSgiHR~LG~h 74 (147)
T 3dwd_A 37 ENNVCFECGA---FNPQWVSVTYG-IWICLECSGRHRGLGVH 74 (147)
T ss_dssp TTTBCTTTCC---BSCCEEETTTT-EEECHHHHHHHHHHCTT
T ss_pred CCCccCCCCC---CCCCeEEeccc-EeEhHhhChHHhcCCCC
Confidence 4678999998 56999999899 59999999877776653
No 25
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens}
Probab=41.97 E-value=10 Score=29.31 Aligned_cols=38 Identities=24% Similarity=0.468 Sum_probs=31.6
Q ss_pred CCccccccccCCCCCCccccCCCCCCccchhhhHHHHhcCCC
Q 030237 88 SETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGAL 129 (181)
Q Consensus 88 ~~~~C~nC~~~~~~Tp~wRrgp~G~~~LCNaCGl~~~~~~~~ 129 (181)
....|.+|+. .-|.|-.-.-| ..+|-.|.-..+.-|+.
T Consensus 36 ~N~~CaDCga---~~P~WaS~n~G-vfiC~~CsgiHR~LG~h 73 (144)
T 2p57_A 36 TNKACFDCGA---KNPSWASITYG-VFLCIDCSGVHRSLGVH 73 (144)
T ss_dssp GGGBCTTTCC---BSCCEEEGGGT-EEECHHHHHHHHHHCTT
T ss_pred CCCcCCCCcC---CCCCeEEeccC-EEEhhhchHHHcCCCCC
Confidence 4688999998 56999998889 49999998877777753
No 26
>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4
Probab=39.00 E-value=6.6 Score=25.87 Aligned_cols=18 Identities=28% Similarity=0.861 Sum_probs=12.2
Q ss_pred CCCCCCccchhhhHHHHh
Q 030237 108 GPSGPRSLCNACGLFWAN 125 (181)
Q Consensus 108 gp~G~~~LCNaCGl~~~~ 125 (181)
+|+||++-|.-||..|..
T Consensus 8 ~~~~P~~eC~lC~vkYs~ 25 (55)
T 2yrk_A 8 GTDGTKPECTLCGVKYSA 25 (55)
T ss_dssp CCCCCCSCCTTTTCCCCS
T ss_pred CCCCCCccccccCccccc
Confidence 666777777777775543
No 27
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7}
Probab=38.96 E-value=18 Score=28.56 Aligned_cols=36 Identities=31% Similarity=0.542 Sum_probs=30.1
Q ss_pred CccccccccCCCCCCccccCCCCCCccchhhhHHHHhcCC
Q 030237 89 ETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGA 128 (181)
Q Consensus 89 ~~~C~nC~~~~~~Tp~wRrgp~G~~~LCNaCGl~~~~~~~ 128 (181)
...|+.|+. .-|.|-.-.-| ..||-.|.-..+..|+
T Consensus 22 N~~CaDCga---~~P~WaS~nlG-vflCi~CSGiHR~LG~ 57 (163)
T 3sub_A 22 NNKCFDCGI---SNPDWVSVNHG-IFLCINCSGVHRSLGV 57 (163)
T ss_dssp GGBCTTTCC---BSCCEEETTTT-EEECHHHHHHHHHTCT
T ss_pred CCccccCCC---CCCCeEEecCC-eeEHHhhhHHhcCCCC
Confidence 678999998 57999999899 5999999776666665
No 28
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=38.07 E-value=7 Score=25.91 Aligned_cols=25 Identities=28% Similarity=0.942 Sum_probs=18.3
Q ss_pred CCCccccccccCCCCCCccccCCCCCCccchhhhHH
Q 030237 87 PSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLF 122 (181)
Q Consensus 87 ~~~~~C~nC~~~~~~Tp~wRrgp~G~~~LCNaCGl~ 122 (181)
+....|.+||.. --++.+|-.||.|
T Consensus 28 p~l~~c~~cGe~-----------~~~H~vc~~CG~Y 52 (60)
T 3v2d_5 28 PTLVPCPECKAM-----------KPPHTVCPECGYY 52 (60)
T ss_dssp CCCEECTTTCCE-----------ECTTSCCTTTCEE
T ss_pred CceeECCCCCCe-----------ecceEEcCCCCcC
Confidence 357889999974 2235799999943
No 29
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=37.11 E-value=11 Score=25.39 Aligned_cols=36 Identities=22% Similarity=0.320 Sum_probs=23.9
Q ss_pred CCCCccccccccCCCCCCccccCCCCCCccchhhhHHHHhcCC
Q 030237 86 SPSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGA 128 (181)
Q Consensus 86 ~~~~~~C~nC~~~~~~Tp~wRrgp~G~~~LCNaCGl~~~~~~~ 128 (181)
....-.|..||.. .... + +...-|..||-+.-.+.+
T Consensus 18 ~~v~Y~C~~Cg~~--~~l~----~-~~~iRC~~CG~RILyK~R 53 (63)
T 3h0g_L 18 ATMIYLCADCGAR--NTIQ----A-KEVIRCRECGHRVMYKMR 53 (63)
T ss_dssp -CCCCBCSSSCCB--CCCC----S-SSCCCCSSSCCCCCBCCC
T ss_pred CCeEEECCCCCCe--eecC----C-CCceECCCCCcEEEEEec
Confidence 3567899999995 3322 2 334789999986655543
No 30
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=35.75 E-value=5.6 Score=31.68 Aligned_cols=29 Identities=24% Similarity=0.560 Sum_probs=22.0
Q ss_pred ccccccccCCCCCCccc--cCCCCCCccchhhhH
Q 030237 90 TSCTHCGISSKSTPMMR--RGPSGPRSLCNACGL 121 (181)
Q Consensus 90 ~~C~nC~~~~~~Tp~wR--rgp~G~~~LCNaCGl 121 (181)
-.|..|+.+ .|-+-+ .+..- -.-|+|||-
T Consensus 97 VlC~~C~sP--dT~L~k~~~~r~~-~l~C~ACGa 127 (170)
T 2g2k_A 97 VLCPECENP--ETDLHVNPKKQTI-GNSCKACGY 127 (170)
T ss_dssp HSCTTTSSS--CEEEEEETTTTEE-EEEETTTCC
T ss_pred EECCCCCCC--ccEEEEecCCCEE-EEEccccCC
Confidence 579999998 888888 33222 367999996
No 31
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=35.21 E-value=8.2 Score=26.32 Aligned_cols=30 Identities=17% Similarity=0.374 Sum_probs=20.3
Q ss_pred CCCCccccccccCCCCCCccccCCCCCCccchhhhHH
Q 030237 86 SPSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLF 122 (181)
Q Consensus 86 ~~~~~~C~nC~~~~~~Tp~wRrgp~G~~~LCNaCGl~ 122 (181)
....-.|.+||.. .... + +...-|-.||-+
T Consensus 25 ~~v~Y~C~~CG~~--~e~~----~-~d~irCp~CG~R 54 (70)
T 1twf_L 25 ATLKYICAECSSK--LSLS----R-TDAVRCKDCGHR 54 (70)
T ss_dssp CCCCEECSSSCCE--ECCC----T-TSTTCCSSSCCC
T ss_pred ceEEEECCCCCCc--ceeC----C-CCCccCCCCCce
Confidence 4567899999985 3332 2 223689999983
No 32
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=34.34 E-value=18 Score=30.17 Aligned_cols=38 Identities=21% Similarity=0.368 Sum_probs=31.0
Q ss_pred CCccccccccCCCCCCccccCCCCCCccchhhhHHHHhcCCC
Q 030237 88 SETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGAL 129 (181)
Q Consensus 88 ~~~~C~nC~~~~~~Tp~wRrgp~G~~~LCNaCGl~~~~~~~~ 129 (181)
....|+.|+. .-|.|-.-.-| ..+|-.|.-..+.-|++
T Consensus 36 ~n~~c~dc~~---~~~~~~~~~~~-~~~c~~c~~~hr~~~~~ 73 (329)
T 3o47_A 36 ENNVCFECGA---FNPQWVSVTYG-IWICLECSGRHRGLGVH 73 (329)
T ss_dssp TTTBCTTTCC---BSCCEEEGGGT-EEECHHHHHHHHHHCTT
T ss_pred CCCcCCCCCC---CCCCeEEecCC-EEEChhhhhhhcccCCC
Confidence 3578999998 68899998889 49999998777776643
No 33
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=32.26 E-value=21 Score=23.19 Aligned_cols=21 Identities=29% Similarity=0.483 Sum_probs=15.5
Q ss_pred CCCCCCCccccccccCCCCCCcc
Q 030237 83 QDDSPSETSCTHCGISSKSTPMM 105 (181)
Q Consensus 83 ~~~~~~~~~C~nC~~~~~~Tp~w 105 (181)
+......|.|..|..- .+|+-
T Consensus 5 ~~~~eD~WkC~~C~k~--N~Pl~ 25 (53)
T 2cr8_A 5 SSGSEDEWQCTECKKF--NSPSK 25 (53)
T ss_dssp SSCCSCCEECSSSCCE--ECSSC
T ss_pred cCCCcceeeccccccc--CCCcc
Confidence 3345578999999985 77773
No 34
>1ovx_A ATP-dependent CLP protease ATP-binding subunit CL; treble CLEF zinc finger, homodimer, metal binding protein; NMR {Escherichia coli} SCOP: g.39.1.11
Probab=30.60 E-value=29 Score=23.54 Aligned_cols=32 Identities=25% Similarity=0.613 Sum_probs=22.1
Q ss_pred ccccccccCCCCCCccccCCCCCCccchhhhHHH
Q 030237 90 TSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFW 123 (181)
Q Consensus 90 ~~C~nC~~~~~~Tp~wRrgp~G~~~LCNaCGl~~ 123 (181)
..|+-||-+.......=.|| | ...|+.|--.-
T Consensus 19 ~~CSFCGK~e~eV~~LIaGp-g-vyICdeCI~~c 50 (67)
T 1ovx_A 19 LYCSFCGKSQHEVRKLIAGP-S-VYICDECVDLC 50 (67)
T ss_dssp CCCTTTCCCTTTSSSEEECS-S-CEEEHHHHHHH
T ss_pred cEecCCCCCHHHHcccCCCC-C-CChhHHHHHHH
Confidence 57999998644444444565 4 48999997543
No 35
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=29.08 E-value=16 Score=27.76 Aligned_cols=31 Identities=26% Similarity=0.591 Sum_probs=23.1
Q ss_pred CccccccccCCCCCCccccCCCCCCccchhhhH
Q 030237 89 ETSCTHCGISSKSTPMMRRGPSGPRSLCNACGL 121 (181)
Q Consensus 89 ~~~C~nC~~~~~~Tp~wRrgp~G~~~LCNaCGl 121 (181)
.+.|..||.. .+...-.|..+....|-.||.
T Consensus 3 ~~~C~~CG~~--~~~~~~~G~~~~~~~~~~~~~ 33 (189)
T 3cng_A 3 MKFCSQCGGE--VILRIPEGDTLPRYICPKCHT 33 (189)
T ss_dssp CCBCTTTCCB--CEEECCTTCSSCEEEETTTTE
T ss_pred cccCchhCCc--cccccccCCCCcceECCCCCC
Confidence 4689999995 555555566666789999993
No 36
>2ds5_A CLPX, ATP-dependent CLP protease ATP-binding subunit CLPX; treble cleft zinc finger, metal binding protein, protein binding; HET: PG4; 1.50A {Escherichia coli} SCOP: g.39.1.11 PDB: 2ds6_A 2ds8_A 2ds7_A
Probab=28.72 E-value=38 Score=21.57 Aligned_cols=31 Identities=26% Similarity=0.643 Sum_probs=21.5
Q ss_pred ccccccccCCCCCCccccCCCCCCccchhhhHH
Q 030237 90 TSCTHCGISSKSTPMMRRGPSGPRSLCNACGLF 122 (181)
Q Consensus 90 ~~C~nC~~~~~~Tp~wRrgp~G~~~LCNaCGl~ 122 (181)
..|+-||-+.......=.|| | ...|+.|--.
T Consensus 12 ~~CSFCGk~~~ev~~LIaGp-g-v~IC~eCi~~ 42 (51)
T 2ds5_A 12 LYCSFCGKSQHEVRKLIAGP-S-VYICDECVDL 42 (51)
T ss_dssp CBCTTTCCBTTTSSCEEECS-S-CEEEHHHHHH
T ss_pred cEecCCCCCHHHhcccCCCC-C-CEehHHHHHH
Confidence 58999998644444444565 3 3899999753
No 37
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.57 E-value=8.7 Score=30.16 Aligned_cols=29 Identities=24% Similarity=0.560 Sum_probs=21.5
Q ss_pred ccccccccCCCCCCccc--cCCCCCCccchhhhH
Q 030237 90 TSCTHCGISSKSTPMMR--RGPSGPRSLCNACGL 121 (181)
Q Consensus 90 ~~C~nC~~~~~~Tp~wR--rgp~G~~~LCNaCGl 121 (181)
-.|..|+.+ .|-+-+ .+..- -.-|+|||-
T Consensus 104 VlC~~C~sP--dT~L~~~~~~r~~-~l~C~ACGa 134 (157)
T 2e9h_A 104 VLCPECENP--ETDLHVNPKKQTI-GNSCKACGY 134 (157)
T ss_dssp TSCTTTCCS--CCEEEEETTTTEE-EEECSSSCC
T ss_pred EECCCCCCC--ccEEEEecCCCEE-EEEccCCCC
Confidence 579999998 888876 32222 367999996
No 38
>4g92_A HAPB protein; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Emericella nidulans} PDB: 4g91_A*
Probab=28.38 E-value=22 Score=23.98 Aligned_cols=25 Identities=32% Similarity=0.395 Sum_probs=20.7
Q ss_pred ceeeehhhHHHHHHhhh-hhcccccc
Q 030237 41 KKVRYSVRQEVALRMQR-NKGQFTSA 65 (181)
Q Consensus 41 K~~rY~~Rqe~A~r~~R-ekGqfss~ 65 (181)
|.+-+++|+..|++++| ..|+|.+.
T Consensus 37 k~YlhESRH~HAm~R~Rg~gGRFl~~ 62 (64)
T 4g92_A 37 KPYLHESRHNHAMRRPRGPGGRFLTA 62 (64)
T ss_dssp CSCSCHHHHHHHHHSCBCTTSCBCCC
T ss_pred cCcchhHHHHHHhcCCcCCCCccccC
Confidence 56889999999999998 56788754
No 39
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=27.74 E-value=36 Score=27.28 Aligned_cols=38 Identities=21% Similarity=0.430 Sum_probs=30.7
Q ss_pred CCccccccccCCCCCCccccCCCCCCccchhhhHHHHhcCCC
Q 030237 88 SETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGAL 129 (181)
Q Consensus 88 ~~~~C~nC~~~~~~Tp~wRrgp~G~~~LCNaCGl~~~~~~~~ 129 (181)
....|..||. .-|.|-.-.-|- .+|-.|--..+..|++
T Consensus 16 ~n~~c~dc~~---~~p~w~s~~~g~-~~c~~c~~~hr~lg~~ 53 (278)
T 1dcq_A 16 GNDVCCDCGA---PDPTWLSTNLGI-LTCIECSGIHRELGVH 53 (278)
T ss_dssp TTTBCTTTCC---BSCCEEETTTTE-EECHHHHHHHHHHCTT
T ss_pred CCCcCCCCCC---CCCCeEEecCCe-EEcHHHHHHHhhcCCC
Confidence 3678999998 578999999995 9999997766666653
No 40
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=27.15 E-value=17 Score=29.54 Aligned_cols=34 Identities=24% Similarity=0.607 Sum_probs=22.4
Q ss_pred CCCccccccccCCCCCCccccCCCCCCccchhhhHHH
Q 030237 87 PSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFW 123 (181)
Q Consensus 87 ~~~~~C~nC~~~~~~Tp~wRrgp~G~~~LCNaCGl~~ 123 (181)
.....|..|+.. .+-+.-.-..|. .+|..|||-+
T Consensus 19 n~~~~CPECGs~--~t~IV~D~erGE-~VCsdCGLVL 52 (197)
T 3k1f_M 19 NIVLTCPECKVY--PPKIVERFSEGD-VVCALCGLVL 52 (197)
T ss_dssp CCCCCCTTTCCS--SCCEEEEGGGTE-EEETTTCBBC
T ss_pred ccCeECcCCCCc--CCeEEEeCCCCE-EEEcCCCCCc
Confidence 345689999973 233433344564 9999999943
No 41
>2ebq_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.96 E-value=21 Score=22.53 Aligned_cols=27 Identities=19% Similarity=0.389 Sum_probs=19.1
Q ss_pred CCCCCccccccccCCCCCCccccCCCCCCccchhhhH
Q 030237 85 DSPSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGL 121 (181)
Q Consensus 85 ~~~~~~~C~nC~~~~~~Tp~wRrgp~G~~~LCNaCGl 121 (181)
.....|.|..|.+. .... ..-|-||+-
T Consensus 7 ~~~g~W~C~~C~v~---------N~a~-~~kC~aCet 33 (47)
T 2ebq_A 7 GVIGTWDCDTCLVQ---------NKPE-AIKCVACET 33 (47)
T ss_dssp CCSSSEECSSSCCE---------ECSS-CSBCSSSCC
T ss_pred CCCCceECCeeecc---------CccC-CceecCcCC
Confidence 34567999999995 2223 478988875
No 42
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=26.42 E-value=12 Score=32.20 Aligned_cols=33 Identities=24% Similarity=0.635 Sum_probs=20.5
Q ss_pred CCccccccccCCCCCCccccCCCCCCccchhhhHHH
Q 030237 88 SETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFW 123 (181)
Q Consensus 88 ~~~~C~nC~~~~~~Tp~wRrgp~G~~~LCNaCGl~~ 123 (181)
....|.+|+.. .+-+.-.-..|. .+|..|||-+
T Consensus 20 ~~~~Cp~C~~~--~~~lv~D~~~G~-~vC~~CGlVl 52 (345)
T 4bbr_M 20 IVLTCPECKVY--PPKIVERFSEGD-VVCALCGLVL 52 (345)
T ss_dssp --CCCSSCCCS--SCCEEEEGGGTE-EEETTTCBEE
T ss_pred cCCcCCCCCCC--CCceeEECCCCc-EEeCCCCCCc
Confidence 34579999962 222333345564 8999999844
No 43
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=26.09 E-value=41 Score=28.67 Aligned_cols=37 Identities=22% Similarity=0.443 Sum_probs=30.4
Q ss_pred CCCccccccccCCCCCCccccCCCCCCccchhhhHHHHhcC
Q 030237 87 PSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKG 127 (181)
Q Consensus 87 ~~~~~C~nC~~~~~~Tp~wRrgp~G~~~LCNaCGl~~~~~~ 127 (181)
+....|..|+. .-|.|-.-.-| ..+|-.|.-..+.-|
T Consensus 43 ~~n~~c~dc~~---~~p~w~s~~~g-~~~c~~c~~~hr~lg 79 (368)
T 3jue_A 43 DGNAQCCDCRE---PAPEWASINLG-VTLCIQCSGIHRSLG 79 (368)
T ss_dssp TTTTBCTTTCC---BSCCEEETTTT-EEECHHHHHHHHHHC
T ss_pred CCcCcCCCCCC---CCCCeEEecCC-eEEcHhHHHHHhccC
Confidence 56789999998 57999999999 599999976555555
No 44
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.46 E-value=1.4e+02 Score=19.20 Aligned_cols=39 Identities=15% Similarity=0.347 Sum_probs=28.0
Q ss_pred CCCCCccccccccCCCCCCccccCCCCCCccchhhhHHHHhcC
Q 030237 85 DSPSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKG 127 (181)
Q Consensus 85 ~~~~~~~C~nC~~~~~~Tp~wRrgp~G~~~LCNaCGl~~~~~~ 127 (181)
.......|.-|... -..|.. -|-|+ .+|-.|-..|....
T Consensus 11 ~~~~~~~C~IC~~~-~~~p~~--~~CgH-~fC~~Ci~~~~~~~ 49 (81)
T 2csy_A 11 EEEIPFRCFICRQA-FQNPVV--TKCRH-YFCESCALEHFRAT 49 (81)
T ss_dssp CCCCCSBCSSSCSB-CCSEEE--CTTSC-EEEHHHHHHHHHHC
T ss_pred cCCCCCCCcCCCch-hcCeeE--ccCCC-HhHHHHHHHHHHCC
Confidence 34456789999875 334442 57785 99999999998753
No 45
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=24.25 E-value=17 Score=28.41 Aligned_cols=26 Identities=27% Similarity=0.712 Sum_probs=18.2
Q ss_pred CCccccccccCCCCCCccccCCCCCCccchhhhHH
Q 030237 88 SETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLF 122 (181)
Q Consensus 88 ~~~~C~nC~~~~~~Tp~wRrgp~G~~~LCNaCGl~ 122 (181)
..|+|.+||.. ... .-| ..|-.||-.
T Consensus 137 ~~~~C~~CG~i--~~~------~~p-~~CP~Cg~~ 162 (170)
T 3pwf_A 137 KVYICPICGYT--AVD------EAP-EYCPVCGAP 162 (170)
T ss_dssp CEEECTTTCCE--EES------CCC-SBCTTTCCB
T ss_pred CeeEeCCCCCe--eCC------CCC-CCCCCCCCC
Confidence 57999999985 321 222 489999953
No 46
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*
Probab=24.02 E-value=27 Score=30.28 Aligned_cols=33 Identities=24% Similarity=0.540 Sum_probs=27.2
Q ss_pred CccccccccCCCCCCccccCCCCCCccchhhhHHHHh
Q 030237 89 ETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWAN 125 (181)
Q Consensus 89 ~~~C~nC~~~~~~Tp~wRrgp~G~~~LCNaCGl~~~~ 125 (181)
...|+.|+. .-|.|-.=.-| ..||-.|.-..+.
T Consensus 34 N~~C~dC~~---~~p~w~s~~~g-~~~C~~Csg~hr~ 66 (386)
T 3lju_X 34 NARCADCGA---PDPDWASYTLG-VFICLSCSGIHRN 66 (386)
T ss_dssp GSBCTTTCC---BSCCEEETTTT-EEECHHHHHHHHT
T ss_pred CCcCccCCC---CCCCeEEeccc-EEEhhhhchHhhC
Confidence 578999998 58999999899 4999999864443
No 47
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=23.84 E-value=10 Score=30.00 Aligned_cols=27 Identities=33% Similarity=0.818 Sum_probs=18.5
Q ss_pred CCccccccccCCCCCCccccCCCCCCccchhhhHH
Q 030237 88 SETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLF 122 (181)
Q Consensus 88 ~~~~C~nC~~~~~~Tp~wRrgp~G~~~LCNaCGl~ 122 (181)
..|+|.+||.. .. |..-| ..|-.||-.
T Consensus 154 ~~~~C~~CG~~--~~-----g~~~p-~~CP~C~~~ 180 (191)
T 1lko_A 154 TKWRCRNCGYV--HE-----GTGAP-ELCPACAHP 180 (191)
T ss_dssp EEEEETTTCCE--EE-----EEECC-SBCTTTCCB
T ss_pred ceEEECCCCCE--ee-----CCCCC-CCCCCCcCC
Confidence 36999999985 22 33333 389999874
No 48
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=23.77 E-value=36 Score=19.51 Aligned_cols=25 Identities=28% Similarity=0.566 Sum_probs=17.0
Q ss_pred CCCccccccccCCCCCCccccCCCCCCccchhhhH
Q 030237 87 PSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGL 121 (181)
Q Consensus 87 ~~~~~C~nC~~~~~~Tp~wRrgp~G~~~LCNaCGl 121 (181)
...|.|..|+.. .-.| +..|+.||.
T Consensus 4 ~gDW~C~~C~~~---Nfa~-------R~~C~~C~~ 28 (33)
T 2k1p_A 4 ANDWQCKTCSNV---NWAR-------RSECNMCNT 28 (33)
T ss_dssp SSSCBCSSSCCB---CCTT-------CSBCSSSCC
T ss_pred CCCcccCCCCCc---cccc-------cccccccCC
Confidence 346999999983 3332 367888875
No 49
>2d9g_A YY1-associated factor 2; ZF-ranbp domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.75 E-value=1.1e+02 Score=19.45 Aligned_cols=25 Identities=16% Similarity=0.454 Sum_probs=18.2
Q ss_pred CCCccccccccCCCCCCccccCCCCCCccchhhhH
Q 030237 87 PSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGL 121 (181)
Q Consensus 87 ~~~~~C~nC~~~~~~Tp~wRrgp~G~~~LCNaCGl 121 (181)
...|.|..|..- .... .+-|.+|+.
T Consensus 9 ~~~W~C~~CT~~---------N~~~-~~~C~~C~~ 33 (53)
T 2d9g_A 9 EGYWDCSVCTFR---------NSAE-AFKCMMCDV 33 (53)
T ss_dssp CCCEECSSSCCE---------ECSS-CSSCSSSCC
T ss_pred CCCcCCCCCccC---------CCCC-CCccCCCCC
Confidence 357999999984 2223 378999987
No 50
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.29 E-value=1.1e+02 Score=19.83 Aligned_cols=35 Identities=20% Similarity=0.255 Sum_probs=21.9
Q ss_pred CCCccccccccCCCCCCccccCCCCCCccchhhhH
Q 030237 87 PSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGL 121 (181)
Q Consensus 87 ~~~~~C~nC~~~~~~Tp~wRrgp~G~~~LCNaCGl 121 (181)
.....|..|+........|+=-.=-.-.||..|=.
T Consensus 9 ~H~~~Cd~C~~~pi~G~RykC~~C~d~DLC~~C~~ 43 (63)
T 2e5r_A 9 FHPVECSYCHSESMMGFRYRCQQCHNYQLCQDCFW 43 (63)
T ss_dssp CSCSCCSSSCCCSSCSCEEEESSCSSCEECHHHHH
T ss_pred eeCCCCcCCCCcceecceEEecCCCCchhHHHHHh
Confidence 34478999996434555565433333479999955
Done!