BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030240
(181 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WS7|A Chain A, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (Zucchini)
pdb|1WS7|B Chain B, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (Zucchini)
pdb|1WS7|C Chain C, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (Zucchini)
pdb|1WS7|D Chain D, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (Zucchini)
pdb|1WS8|A Chain A, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (zucchini)
pdb|1WS8|B Chain B, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (zucchini)
pdb|1WS8|C Chain C, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (zucchini)
pdb|1WS8|D Chain D, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (zucchini)
Length = 109
Score = 79.7 bits (195), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 50/80 (62%)
Query: 52 QWAEKTRFQVGDSLVWKYDATRDSVLQVTKEAYLSCNTSSPVAEYRDGNTKVKLNKSGPF 111
+WA +F VGDSL++ Y+ +VLQV +E + SCN+SSP A Y G + L + G F
Sbjct: 23 KWASSNKFHVGDSLLFNYNNKFHNVLQVDQEQFKSCNSSSPAASYTSGADSIPLKRPGTF 82
Query: 112 YFISGTKGSCEKGQKLIVVV 131
YF+ G G C+ GQK+ + V
Sbjct: 83 YFLCGIPGHCQLGQKVEIKV 102
>pdb|1X9R|A Chain A, Umecyanin From Horse Raddish- Crystal Structure Of The
Oxidised Form
pdb|1X9R|B Chain B, Umecyanin From Horse Raddish- Crystal Structure Of The
Oxidised Form
pdb|1X9U|A Chain A, Umecyanin From Horse Raddish- Crystal Structure Of The
Reduced Form
pdb|1X9U|B Chain B, Umecyanin From Horse Raddish- Crystal Structure Of The
Reduced Form
Length = 116
Score = 60.8 bits (146), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 52/104 (50%), Gaps = 2/104 (1%)
Query: 29 RDILVGGKTDSWKIPSSQSDSLNQWAEKTRFQVGDSLVWKYDATRDSVLQVTKEAYLSCN 88
D VGG + WK PS + WA F+VGD L + + A V VTK+A+ +C
Sbjct: 2 EDYDVGGDME-WKRPSDPKFYIT-WATGKTFRVGDELEFDFAAGMHDVAVVTKDAFDNCK 59
Query: 89 TSSPVAEYRDGNTKVKLNKSGPFYFISGTKGSCEKGQKLIVVVM 132
+P++ K+ LN +GP Y+I C GQKL + V+
Sbjct: 60 KENPISHMTTPPVKIMLNTTGPQYYICTVGDHCRVGQKLSINVV 103
>pdb|2CBP|A Chain A, Cucumber Basic Protein, A Blue Copper Protein
Length = 96
Score = 53.5 bits (127), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 53 WAEKTRFQVGDSLVWKYDATRDSVLQVTKEAYLSCNTSSPVAEYRDGNTKVKLNKSGPFY 112
W + RF+ GD L++ Y+ + +V+ V + + +CNT + Y G ++KL K G Y
Sbjct: 18 WPKGKRFRAGDILLFNYNPSMHNVVVVNQGGFSTCNTPAGAKVYTSGRDQIKLPK-GQSY 76
Query: 113 FISGTKGSCEKGQKLIV 129
FI G C+ G K+ V
Sbjct: 77 FICNFPGHCQSGMKIAV 93
>pdb|1JER|A Chain A, Cucumber Stellacyanin, Cu2+, Ph 7.0
Length = 138
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 58/115 (50%), Gaps = 19/115 (16%)
Query: 31 ILVGGKTDSWKIPSSQSDSLNQWAEKTRFQVGDSLVWKYDATRDSVLQV-TKEAYLSCN- 88
+ + G W +PSS + +QWA F+VGDSL + + A +V ++ TK+++ +CN
Sbjct: 5 VHIVGDNTGWSVPSS-PNFYSQWAAGKTFRVGDSLQFNFPANAHNVHEMETKQSFDACNF 63
Query: 89 --------TSSPVAEYRDGNTKVKLNKSGPFYFISGTKGSCEKGQKLIVVVMSSR 135
+SPV E +L++ G YF+ C GQKL + V+++
Sbjct: 64 VNSDNDVERTSPVIE--------RLDELGMHYFVCTVGTHCSNGQKLSINVVAAN 110
>pdb|1F56|A Chain A, Spinach Plantacyanin
pdb|1F56|B Chain B, Spinach Plantacyanin
pdb|1F56|C Chain C, Spinach Plantacyanin
Length = 91
Score = 46.6 bits (109), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Query: 54 AEKTRFQVGDSLVWKYDATRDSVLQVTKEAYLSCNTSSPVAEYRDGNTKVKLNKSGPFYF 113
A F+ GD LV+KY + +V+ V Y SC+ Y G ++KL + G YF
Sbjct: 14 ARGKSFRAGDVLVFKYIKGQHNVVAVNGRGYASCSAPRGARTYSSGQDRIKLTR-GQNYF 72
Query: 114 ISGTKGSCEKGQKLIV 129
I G C G K+ +
Sbjct: 73 ICSFPGHCGGGMKIAI 88
>pdb|1JPU|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Glycerol
Dehydrogenase
pdb|1JQA|A Chain A, Bacillus Stearothermophilus Glycerol Dehydrogenase Complex
With Glycerol
pdb|1JQ5|A Chain A, Bacillus Stearothermophilus Glycerol Dehydrogenase Complex
With Nad+
Length = 370
Score = 30.8 bits (68), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Query: 26 CEARDIL-VGGKTDSWKIPSSQSDSLNQWAEKTRFQVGDSLVWKYDATRDSVLQVTKEAY 84
EAR ++ GGKT + IP+ ++++ + E+T F+ G Y++ + V+ EA
Sbjct: 179 VEARSVIKSGGKTMAGGIPTIAAEAIAEKCEQTLFKYGK---LAYESVKAKVVTPALEAV 235
Query: 85 LSCNT 89
+ NT
Sbjct: 236 VEANT 240
>pdb|1UPS|A Chain A, Glcnac[alpha]1-4gal Releasing Endo-[beta]-Galactosidase
From Clostridium Perfringens
pdb|1UPS|B Chain B, Glcnac[alpha]1-4gal Releasing Endo-[beta]-Galactosidase
From Clostridium Perfringens
Length = 420
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Query: 46 QSDSLNQWAEKTRFQVGDSLVWKYDATRDSVLQVTKEAYLSCNTSSPVAEYRDGNTKVKL 105
+S+SLN + + R Q G L + + + S +T + + S EYRDG T +K
Sbjct: 285 ESESLNNYLIRNR-QTGKFLYIEENNDKVSYGDITLKNEKNAKWSK---EYRDGYTLLKN 340
Query: 106 NKSGPFYFISGTKGSCEKGQ 125
N++G + I G E G+
Sbjct: 341 NETGEYLNIENQTGYIEHGK 360
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.128 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,456,876
Number of Sequences: 62578
Number of extensions: 166912
Number of successful extensions: 374
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 364
Number of HSP's gapped (non-prelim): 14
length of query: 181
length of database: 14,973,337
effective HSP length: 93
effective length of query: 88
effective length of database: 9,153,583
effective search space: 805515304
effective search space used: 805515304
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 48 (23.1 bits)