BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030240
(181 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SK27|ENL1_ARATH Early nodulin-like protein 1 OS=Arabidopsis thaliana GN=At2g25060
PE=1 SV=2
Length = 182
Score = 179 bits (453), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 90/165 (54%), Positives = 120/165 (72%), Gaps = 7/165 (4%)
Query: 19 VLFSISFCEARDILVGGKTDSWKIPSSQSDSLNQWAEKTRFQVGDSLVWKYDATRDSVLQ 78
++F S A ++ VGGK+ WKIP S S S +WA+K RF+VGD +V++Y++ +DSVL+
Sbjct: 19 LIFLFSLAAANEVTVGGKSGDWKIPPSSSYSFTEWAQKARFKVGDFIVFRYESGKDSVLE 78
Query: 79 VTKEAYLSCNTSSPVAEYRDGNTKVKLNKSGPFYFISGTKGSCEKGQKLIVVVMSSRRRY 138
VTKEAY SCNT++P+A Y DG TKVKL++SGPFYFISG G CEKGQKL +VV+S R+
Sbjct: 79 VTKEAYNSCNTTNPLANYTDGETKVKLDRSGPFYFISGANGHCEKGQKLSLVVISP--RH 136
Query: 139 TGISPAPAPMEF-DGPAVAPTSSAASFK-ASLVLALG---GLLAW 178
+ ISPAP+P+EF DGPA+AP + S + + LG GL AW
Sbjct: 137 SVISPAPSPVEFEDGPALAPAPISGSVRLGGCYVVLGLVLGLCAW 181
>sp|Q8LC95|ENL3_ARATH Early nodulin-like protein 3 OS=Arabidopsis thaliana GN=At5g25090
PE=1 SV=2
Length = 186
Score = 169 bits (429), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 94/186 (50%), Positives = 128/186 (68%), Gaps = 12/186 (6%)
Query: 8 LASSSLVLTSLVLFSI--SFCEARDILVGGKTDSWKIPSSQSDSLNQWAEKTRFQVGDSL 65
+A +LV T ++F + + +++I+VGGKT SWKIPSS S+SLN+WAE RF+VGD+L
Sbjct: 1 MAQRTLVATFFLIFFLLTNLVCSKEIIVGGKTSSWKIPSSPSESLNKWAESLRFRVGDTL 60
Query: 66 VWKYDATRDSVLQVTKEAYLSCNTSSPVAEYRDGNTKVKLNKSGPFYFISGTKGSCEKGQ 125
VWKYD +DSVLQVTK+AY++CNT++P A Y +G+TKVKL +SGP++FISG+K +C +G+
Sbjct: 61 VWKYDEEKDSVLQVTKDAYINCNTTNPAANYSNGDTKVKLERSGPYFFISGSKSNCVEGE 120
Query: 126 KLIVVVMSSRRRYTGISPAPAPME-------FDGPAVAPTS--SAASFKASL-VLALGGL 175
KL +VVMSSR +TG + P VAP S SA+S + VL GL
Sbjct: 121 KLHIVVMSSRGGHTGGFFTGSSPSPAPSPALLGAPTVAPASGGSASSLTRQVGVLGFVGL 180
Query: 176 LAWVLF 181
LA VL
Sbjct: 181 LAIVLL 186
>sp|P93328|NO16_MEDTR Early nodulin-16 OS=Medicago truncatula GN=ENOD16 PE=3 SV=1
Length = 180
Score = 108 bits (271), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 54/132 (40%), Positives = 82/132 (62%), Gaps = 5/132 (3%)
Query: 8 LASSSLVLTSLVLFS----ISFCEARDILVGGKTDSWKIPSSQSDSLNQWAEKTRFQVGD 63
+ASSS +L +++FS IS E+ D L+G +SWK+P + +WA F VGD
Sbjct: 1 MASSSPILL-MIIFSMWLLISHSESTDYLIGDSHNSWKVPLPSRRAFARWASAHEFTVGD 59
Query: 64 SLVWKYDATRDSVLQVTKEAYLSCNTSSPVAEYRDGNTKVKLNKSGPFYFISGTKGSCEK 123
+++++YD +SV +V + Y+ C+T+ E+ DGNTKV L+K G ++FISGTK C+
Sbjct: 60 TILFEYDNETESVHEVNEHDYIMCHTNGEHVEHHDGNTKVVLDKIGVYHFISGTKRHCKM 119
Query: 124 GQKLIVVVMSSR 135
G KL VVV +
Sbjct: 120 GLKLAVVVQNKH 131
>sp|Q9T076|ENL2_ARATH Early nodulin-like protein 2 OS=Arabidopsis thaliana GN=At4g27520
PE=1 SV=1
Length = 349
Score = 104 bits (259), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 55/132 (41%), Positives = 84/132 (63%), Gaps = 5/132 (3%)
Query: 12 SLVLTSLVLFSISFCEARDILVGGKTDSWKIPSSQSDSLNQWAEKTRFQVGDSLVWKYDA 71
+++L+ LF+IS AR VGG + +W ++ ++ W+ K RF V D+L + Y
Sbjct: 14 TILLSLSTLFTIS--NARKFNVGG-SGAWV--TNPPENYESWSGKNRFLVHDTLYFSYAK 68
Query: 72 TRDSVLQVTKEAYLSCNTSSPVAEYRDGNTKVKLNKSGPFYFISGTKGSCEKGQKLIVVV 131
DSVL+V K Y +CNT +P+ DG++++ L++ GPFYFISG + +C+KGQKL VVV
Sbjct: 69 GADSVLEVNKADYDACNTKNPIKRVDDGDSEISLDRYGPFYFISGNEDNCKKGQKLNVVV 128
Query: 132 MSSRRRYTGISP 143
+S+R T SP
Sbjct: 129 ISARIPSTAQSP 140
>sp|Q02917|NO552_SOYBN Early nodulin-55-2 OS=Glycine max GN=ENOD55-2 PE=2 SV=1
Length = 187
Score = 101 bits (252), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 57/132 (43%), Positives = 79/132 (59%), Gaps = 8/132 (6%)
Query: 9 ASSSLVLTSLVLFSISFCEARDILVGGKTDSWKIPSSQSDSLNQWAEKTRFQVGDSLVWK 68
AS LV+ ++ L IS EA +VGG SWK P S+ DSL+ WA RF++GD+L++K
Sbjct: 8 ASPFLVMLAMCLL-ISTSEAEKYVVGGSEKSWKFPLSKPDSLSHWANSHRFKIGDTLIFK 66
Query: 69 YDATRDSVLQVTKEAYLSCNTSSPVAEYR----DGNTKVKLNKSGPFYFISGTKGSCEKG 124
Y+ +SV + + Y CNT V +Y GNTKV L K G +FISG + C+ G
Sbjct: 67 YEKRTESVHEGNETDYEGCNT---VGKYHIVFNGGNTKVMLTKPGFRHFISGNQSHCQMG 123
Query: 125 QKLIVVVMSSRR 136
KL V+V+SS +
Sbjct: 124 LKLAVLVISSNK 135
>sp|Q5JNJ5|ENL1_ORYSJ Early nodulin-like protein 1 OS=Oryza sativa subsp. japonica
GN=ENODL1 PE=1 SV=1
Length = 237
Score = 96.3 bits (238), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 59/144 (40%), Positives = 85/144 (59%), Gaps = 11/144 (7%)
Query: 14 VLTSLVLFSISFCEARDILVGGKTDSWKIPSSQSDSLNQWAEKTRFQVGDSLVWKYD-AT 72
VL + +FS S EA GG+ D W + ++S N WAE+ RFQV D++V+ +D
Sbjct: 16 VLGLVAVFSSS--EAYVFYAGGR-DGWVV--DPAESFNYWAERNRFQVNDTIVFLHDDEV 70
Query: 73 RDSVLQVTKEAYLSCNTSSPVAEYRD---GNTKVKLNKSGPFYFISGTKGSCEKGQKLIV 129
SVLQVT+ + +C+T +PV D G + + ++SGPF+FISG + C+KGQKL +
Sbjct: 71 GGSVLQVTEGDFDTCSTGNPVQRLEDVAAGRSVFRFDRSGPFFFISGDEDRCQKGQKLYI 130
Query: 130 VVMSSRRRYTGISPAPAPMEFDGP 153
+VM+ R T S AP P GP
Sbjct: 131 IVMAVRP--TKPSEAPEPAGAAGP 152
>sp|P93329|NO20_MEDTR Early nodulin-20 OS=Medicago truncatula GN=ENOD20 PE=3 SV=1
Length = 268
Score = 95.9 bits (237), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 50/128 (39%), Positives = 72/128 (56%), Gaps = 3/128 (2%)
Query: 8 LASSSLVLTSLVL---FSISFCEARDILVGGKTDSWKIPSSQSDSLNQWAEKTRFQVGDS 64
++SSS +L + IS+ E+ D LVG +SWK P +L +WA +F VGD+
Sbjct: 1 MSSSSPILLMFIFSIWMLISYSESTDYLVGDSENSWKFPLPTRHALTRWASNYQFIVGDT 60
Query: 65 LVWKYDATRDSVLQVTKEAYLSCNTSSPVAEYRDGNTKVKLNKSGPFYFISGTKGSCEKG 124
+ ++Y+ +SV +V +E Y C ++ DGNT V L K+G +FISG K C G
Sbjct: 61 ITFQYNNKTESVHEVEEEDYDRCGIRGEHVDHYDGNTMVVLKKTGIHHFISGKKRHCRLG 120
Query: 125 QKLIVVVM 132
KL VVVM
Sbjct: 121 LKLAVVVM 128
>sp|P80728|MAVI_CUCPE Mavicyanin OS=Cucurbita pepo PE=1 SV=1
Length = 108
Score = 80.1 bits (196), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 50/80 (62%)
Query: 52 QWAEKTRFQVGDSLVWKYDATRDSVLQVTKEAYLSCNTSSPVAEYRDGNTKVKLNKSGPF 111
+WA +F VGDSL++ Y+ +VLQV +E + SCN+SSP A Y G + L + G F
Sbjct: 22 KWASSNKFHVGDSLLFNYNNKFHNVLQVDQEQFKSCNSSSPAASYTSGADSIPLKRPGTF 81
Query: 112 YFISGTKGSCEKGQKLIVVV 131
YF+ G G C+ GQK+ + V
Sbjct: 82 YFLCGIPGHCQLGQKVEIKV 101
>sp|P00302|STEL_TOXVR Stellacyanin OS=Toxicodendron vernicifluum PE=1 SV=1
Length = 107
Score = 74.7 bits (182), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 55/98 (56%), Gaps = 1/98 (1%)
Query: 35 GKTDSWKIPS-SQSDSLNQWAEKTRFQVGDSLVWKYDATRDSVLQVTKEAYLSCNTSSPV 93
G + WK+P D +WA F +GD LV+KYD +V +VT++ Y SCN ++P+
Sbjct: 6 GDSAGWKVPFFGDVDYDWKWASNKTFHIGDVLVFKYDRRFHNVDKVTQKNYQSCNDTTPI 65
Query: 94 AEYRDGNTKVKLNKSGPFYFISGTKGSCEKGQKLIVVV 131
A Y GB ++ L G Y+I G C+ GQK+ + V
Sbjct: 66 ASYNTGBBRINLKTVGQKYYICGVPKHCDLGQKVHINV 103
>sp|Q05544|NO551_SOYBN Early nodulin-55-1 (Fragment) OS=Glycine max GN=ENOD55-1 PE=2 SV=1
Length = 137
Score = 64.3 bits (155), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 68 KYDATRDSVLQVTKEAYLSCNT-SSPVAEYRDGNTKVKLNKSGPFYFISGTKGSCEKGQK 126
KYD +SV +V + Y CNT + DGNTKV L KSG +FISG + C+ G K
Sbjct: 1 KYDERTESVHEVNETDYEQCNTVGKEHVLFNDGNTKVMLTKSGFRHFISGNQSHCQMGLK 60
Query: 127 LIVVVMSSRRR 137
L+VVVMS+ +
Sbjct: 61 LMVVVMSNNTK 71
>sp|P42849|UMEC_ARMRU Umecyanin OS=Armoracia rusticana PE=1 SV=1
Length = 115
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 52/104 (50%), Gaps = 2/104 (1%)
Query: 29 RDILVGGKTDSWKIPSSQSDSLNQWAEKTRFQVGDSLVWKYDATRDSVLQVTKEAYLSCN 88
D VGG + WK PS + WA F+VGD L + + A V VTK+A+ +C
Sbjct: 1 EDYDVGGDME-WKRPSDPKFYIT-WATGKTFRVGDELEFDFAAGMHDVAVVTKDAFDNCK 58
Query: 89 TSSPVAEYRDGNTKVKLNKSGPFYFISGTKGSCEKGQKLIVVVM 132
+P++ K+ LN +GP Y+I C GQKL + V+
Sbjct: 59 KENPISHMTTPPVKIMLNTTGPQYYICTVGDHCRVGQKLSINVV 102
>sp|Q07488|BCB1_ARATH Blue copper protein OS=Arabidopsis thaliana GN=BCB PE=1 SV=2
Length = 196
Score = 60.8 bits (146), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 56/123 (45%), Gaps = 7/123 (5%)
Query: 29 RDILVGGKTDSWKIPSSQSDSLNQWAEKTRFQVGDSLVWKYDATRDSVLQVTKEAYLSCN 88
D VG T+ W P + WA F+VGD L + + A R V V++ A+ +C
Sbjct: 23 EDYDVGDDTE-WTRPM-DPEFYTTWATGKTFRVGDELEFDFAAGRHDVAVVSEAAFENCE 80
Query: 89 TSSPVAEYRDGNTKVKLNKSGPFYFISGTKGSCEKGQKLIVVVMSS-----RRRYTGISP 143
P++ K+ LN +GP YFI C GQKL + V+++ G +P
Sbjct: 81 KEKPISHMTVPPVKIMLNTTGPQYFICTVGDHCRFGQKLSITVVAAGATGGATPGAGATP 140
Query: 144 APA 146
AP
Sbjct: 141 APG 143
>sp|Q41001|BCP_PEA Blue copper protein OS=Pisum sativum PE=2 SV=1
Length = 189
Score = 60.5 bits (145), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 59/123 (47%), Gaps = 5/123 (4%)
Query: 10 SSSLVLTSLV-LFSISFCEARDILVGGKTDSWKIPSSQSDSLNQWAEKTRFQVGDSLVWK 68
S++LVL L+ + +++ + G T W I S WA F VGDSLV+
Sbjct: 4 SNALVLCFLLAIINMALPSLATVYTVGDTSGWVIGGDYS----TWASDKTFAVGDSLVFN 59
Query: 69 YDATRDSVLQVTKEAYLSCNTSSPVAEYRDGNTKVKLNKSGPFYFISGTKGSCEKGQKLI 128
Y A +V +V + Y SC + + ++ G T + L K+G YFI G G G KL
Sbjct: 60 YGAGAHTVDEVKESDYKSCTSGNSISTDSTGATTIPLKKAGKHYFICGVPGHSTGGMKLS 119
Query: 129 VVV 131
+ V
Sbjct: 120 IKV 122
>sp|O80517|BCB2_ARATH Uclacyanin-2 OS=Arabidopsis thaliana GN=At2g44790 PE=1 SV=1
Length = 202
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 53 WAEKTRFQVGDSLVWKYDATRDSVLQVTKEAYLSCNTSSPVAEYRDGNTKVKLNKSGPFY 112
WA F+VGD L +KY ++ +V V K Y C+ SS + DG+TK+ L G Y
Sbjct: 45 WATGKTFRVGDILEFKYGSSH-TVDVVDKAGYDGCDASSSTENHSDGDTKIDLKTVGINY 103
Query: 113 FISGTKGSC--EKGQKLIVVVMS 133
FI T G C G KL V V++
Sbjct: 104 FICSTPGHCRTNGGMKLAVNVVA 126
>sp|P00303|BABL_CUCSA Basic blue protein OS=Cucumis sativus PE=1 SV=1
Length = 96
Score = 53.5 bits (127), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 53 WAEKTRFQVGDSLVWKYDATRDSVLQVTKEAYLSCNTSSPVAEYRDGNTKVKLNKSGPFY 112
W + RF+ GD L++ Y+ +V+ V + + +CNT + Y G ++KL K G Y
Sbjct: 18 WPKGKRFRAGDILLFNYNPXMHNVVVVNQGGFSTCNTPAGAKVYTSGRDQIKLPK-GQSY 76
Query: 113 FISGTKGSCEKGQKLIV 129
FI G C+ G K+ V
Sbjct: 77 FICNFPGHCQSGMKIAV 93
>sp|P29602|CPC_CUCSA Cucumber peeling cupredoxin OS=Cucumis sativus PE=1 SV=3
Length = 137
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 58/115 (50%), Gaps = 19/115 (16%)
Query: 31 ILVGGKTDSWKIPSSQSDSLNQWAEKTRFQVGDSLVWKYDATRDSVLQV-TKEAYLSCN- 88
+ + G W +PSS + +QWA F+VGDSL + + A +V ++ TK+++ +CN
Sbjct: 4 VHIVGDNTGWSVPSS-PNFYSQWAAGKTFRVGDSLQFNFPANAHNVHEMETKQSFDACNF 62
Query: 89 --------TSSPVAEYRDGNTKVKLNKSGPFYFISGTKGSCEKGQKLIVVVMSSR 135
+SPV E +L++ G YF+ C GQKL + V+++
Sbjct: 63 VNSDNDVERTSPVIE--------RLDELGMHYFVCTVGTHCSNGQKLSINVVAAN 109
>sp|Q39131|LAML_ARATH Lamin-like protein OS=Arabidopsis thaliana GN=At5g15350 PE=1 SV=1
Length = 172
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Query: 53 WAEKTRFQVGDSLVWKYDATRDSVLQVTKEAYLSCNTSSPVAEYRDGNTK--VKLNKSGP 110
WA+ F +GD L + +D + ++L+V K Y C P+ + G + V LN++
Sbjct: 46 WAQGKHFYLGDWLYFVFDRNQHNILEVNKTDYEGCIADHPIRNWTRGAGRDIVTLNQTKH 105
Query: 111 FYFISGTKGSCEKGQKLIVVV 131
+Y + G KG C G KL V V
Sbjct: 106 YYLLDG-KGGCYGGMKLSVKV 125
>sp|P60496|BABL_LILLO Chemocyanin OS=Lilium longiflorum PE=1 SV=1
Length = 126
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Query: 53 WAEKTRFQVGDSLVWKYDATRDSVLQVTKEAYLSCNTSSPVAEYRDGNTKVKLNKSGPFY 112
W F+ GD LV+KY+ +V+ V Y SC S ++ G+ ++ L++ G Y
Sbjct: 48 WPAGKTFRAGDVLVFKYNPAVHNVVSVPAGGYKSCTASPGSRVFKSGDDRITLSR-GTNY 106
Query: 113 FISGTKGSCEKGQKLIV 129
FI G C+ G K+ V
Sbjct: 107 FICSVPGHCQGGLKIAV 123
>sp|Q8LG89|BABL_ARATH Basic blue protein OS=Arabidopsis thaliana GN=ARPN PE=1 SV=2
Length = 129
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 53 WAEKTRFQVGDSLVWKYDATRDSVLQVTKEAYLSCNTSSPVAEYRDGNTKVKLNKSGPFY 112
W + F+ GD LV+ Y+ +V++V +Y +C T + Y G ++ L+K G +
Sbjct: 51 WPKGKHFRAGDVLVFNYNPRMHNVVKVDSGSYNNCKTPTGAKPYTSGKDRITLSK-GQNF 109
Query: 113 FISGTKGSCEKGQKLIV 129
FI CE K+ V
Sbjct: 110 FICNFPNHCESDMKIAV 126
>sp|P00304|MPAA3_AMBEL Pollen allergen Amb a 3 OS=Ambrosia artemisiifolia var. elatior
PE=1 SV=2
Length = 101
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 48/105 (45%), Gaps = 16/105 (15%)
Query: 32 LVGG-KTDSWKIPSSQSDSLNQWAEKTRFQVGDSLVWKYDATRDSVLQV-TKEAYLSCNT 89
LVGG + WK+ S + W+ + +F+ D L + + DSV +V +EAY +C+
Sbjct: 5 LVGGPELGGWKL-QSDPRAYALWSARQQFKTTDVLWFNFTTGEDSVAEVWREEAYHACDI 63
Query: 90 SSPVAEYRDGNTKVKLNKSGPFYFISGTKGS---CEKGQKLIVVV 131
P ++L GP F T GS C K QK + V
Sbjct: 64 KDP----------IRLEPGGPDRFTLLTPGSHFICTKDQKFVACV 98
>sp|P25226|NO5_PEA Early nodulin-5 OS=Pisum sativum GN=ENOD5 PE=2 SV=1
Length = 135
Score = 36.2 bits (82), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 8 LASSSLVLTSLVLFSI----SFCEARDILVGGKTDSWKIPSSQSDSLNQWAEKTRFQVGD 63
+ASSS + +++FS+ S+ E+ + LV +SWK+ D+LN+W + + + D
Sbjct: 1 MASSSSPIFLMIIFSMWLLFSYSESTEYLVRDSENSWKVNFPSRDALNRWVTRHQLTIHD 60
Query: 64 SL 65
++
Sbjct: 61 TI 62
>sp|Q41705|NO5_VICSA Early nodulin-5 (Fragment) OS=Vicia sativa GN=ENOD5 PE=2 SV=1
Length = 124
Score = 31.2 bits (69), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 13 LVLTSLVLFSISFCEARDILVGGKTDSWKIPSSQSDSLNQWAEKTRFQVGDSLV 66
++ + +LFS F E+ + + G SWK+ ++L WA + +F D++V
Sbjct: 1 IIFSMWLLFS--FSESTEYIAGDSESSWKVNFPSREALIDWATRHQFTYSDTVV 52
>sp|P32816|GLDA_GEOSE Glycerol dehydrogenase OS=Geobacillus stearothermophilus GN=gldA
PE=1 SV=1
Length = 370
Score = 30.8 bits (68), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Query: 24 SFCEARDILV-GGKTDSWKIPSSQSDSLNQWAEKTRFQVGDSLVWKYDATRDSVLQVTKE 82
++ EAR ++ GGKT + IP+ ++++ + E+T F+ G Y++ + V+ E
Sbjct: 177 TWVEARSVIKSGGKTMAGGIPTIAAEAIAEKCEQTLFKYGK---LAYESVKAKVVTPALE 233
Query: 83 AYLSCNT 89
A + NT
Sbjct: 234 AVVEANT 240
>sp|A1L1C7|PAN3_XENTR PAB-dependent poly(A)-specific ribonuclease subunit 3 OS=Xenopus
tropicalis GN=pan3 PE=2 SV=1
Length = 787
Score = 30.4 bits (67), Expect = 6.0, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 23/49 (46%)
Query: 63 DSLVWKYDATRDSVLQVTKEAYLSCNTSSPVAEYRDGNTKVKLNKSGPF 111
+SL+W Y S L+ A L+C P G T++++N G F
Sbjct: 515 ESLIWAYIVQLSSALRTIHTAGLACRVMDPTKILITGKTRLRVNCVGIF 563
>sp|Q5U2S6|ASB2_RAT Ankyrin repeat and SOCS box protein 2 OS=Rattus norvegicus GN=Asb2
PE=2 SV=1
Length = 634
Score = 30.0 bits (66), Expect = 7.9, Method: Composition-based stats.
Identities = 30/93 (32%), Positives = 41/93 (44%), Gaps = 6/93 (6%)
Query: 84 YLSC-NTSSPVAEY--RDGNTKVKLNKSG--PFYFISGTKGSCEKGQKLIVVVMSSRRRY 138
Y +C N V E+ G K NK G P + ++ KG+ Q L+ V +R R
Sbjct: 309 YEACKNEHEDVVEFLLSQGADANKANKDGLLPLH-VASKKGNYRIVQMLLPVTSRTRVRR 367
Query: 139 TGISPAPAPMEFDGPAVAPTSSAASFKASLVLA 171
+GISP E + AV AA F + LA
Sbjct: 368 SGISPLHLAAERNHDAVLEALLAARFDVNTPLA 400
>sp|Q5FIN8|METK_LACAC S-adenosylmethionine synthase OS=Lactobacillus acidophilus (strain
ATCC 700396 / NCK56 / N2 / NCFM) GN=metK PE=3 SV=1
Length = 399
Score = 30.0 bits (66), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 40/82 (48%), Gaps = 7/82 (8%)
Query: 94 AEYRDGNTKVKLNKSGPFYFISGTKG-SCEKGQKLIVVVMSSRRRYTGIS-PAPAPMEFD 151
A+Y D NTK +N SG F I G KG S G+K+IV R+ G + P + D
Sbjct: 226 AKYLDENTKFLINPSGRF-VIGGPKGDSGLTGRKIIVDTYGGYARHGGGAFSGKDPTKVD 284
Query: 152 GPAVAPTSSAASFKASLVLALG 173
A S AA + A ++A G
Sbjct: 285 RSA----SYAARYVAKNIVAAG 302
>sp|Q58A45|PAN3_HUMAN PAB-dependent poly(A)-specific ribonuclease subunit 3 OS=Homo
sapiens GN=PAN3 PE=1 SV=3
Length = 887
Score = 30.0 bits (66), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 49/122 (40%), Gaps = 16/122 (13%)
Query: 6 RTLASSSLVLTSLVLFSISFCE-----ARDILVGGKTD-SWKIPSSQSDSL---NQWAEK 56
+ + S++V V + +F E A D GG+T S +D+ +W +
Sbjct: 541 KKIQHSNIVTLREVFTTKAFAEPSLVFAYDFHAGGETMMSRHFNDPNADAYFTKRKWGQH 600
Query: 57 T----RFQVG---DSLVWKYDATRDSVLQVTKEAYLSCNTSSPVAEYRDGNTKVKLNKSG 109
R G +SL+W Y S L+ A L+C P G T++++N G
Sbjct: 601 EGPLPRQHAGLLPESLIWAYIVQLSSALRTIHTAGLACRVMDPTKILITGKTRLRVNCVG 660
Query: 110 PF 111
F
Sbjct: 661 VF 662
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.130 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,719,657
Number of Sequences: 539616
Number of extensions: 2455082
Number of successful extensions: 6169
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 6127
Number of HSP's gapped (non-prelim): 36
length of query: 181
length of database: 191,569,459
effective HSP length: 110
effective length of query: 71
effective length of database: 132,211,699
effective search space: 9387030629
effective search space used: 9387030629
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)