Query 030240
Match_columns 181
No_of_seqs 122 out of 865
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 10:43:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030240.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030240hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03148 Blue copper-like prot 100.0 1.9E-42 4E-47 278.7 16.1 107 21-133 13-119 (167)
2 PF02298 Cu_bind_like: Plastoc 100.0 2E-32 4.3E-37 198.5 5.1 85 40-125 1-85 (85)
3 PRK02710 plastocyanin; Provisi 98.9 2.5E-08 5.3E-13 76.0 11.3 115 1-132 1-119 (119)
4 PF00127 Copper-bind: Copper b 98.7 5.1E-08 1.1E-12 71.6 7.0 75 56-132 18-99 (99)
5 TIGR02656 cyanin_plasto plasto 98.7 1.8E-07 3.9E-12 68.9 8.9 91 30-132 2-99 (99)
6 TIGR03102 halo_cynanin halocya 98.5 9.6E-07 2.1E-11 67.5 8.9 90 26-132 21-115 (115)
7 COG3794 PetE Plastocyanin [Ene 98.3 5.7E-06 1.2E-10 64.5 9.4 85 30-132 39-127 (128)
8 TIGR02375 pseudoazurin pseudoa 98.2 7.6E-06 1.7E-10 62.6 8.4 74 56-134 16-89 (116)
9 TIGR03095 rusti_cyanin rusticy 97.3 0.00097 2.1E-08 52.9 7.1 76 57-132 54-148 (148)
10 TIGR02657 amicyanin amicyanin. 97.3 0.0017 3.6E-08 46.2 7.5 70 56-132 12-83 (83)
11 PF06525 SoxE: Sulfocyanin (So 96.8 0.0083 1.8E-07 49.9 8.1 76 61-136 92-190 (196)
12 PF13473 Cupredoxin_1: Cupredo 96.0 0.0054 1.2E-07 45.0 2.7 63 56-131 36-104 (104)
13 PF00812 Ephrin: Ephrin; Inte 96.0 0.0051 1.1E-07 48.9 2.5 76 57-132 24-144 (145)
14 KOG3858 Ephrin, ligand for Eph 95.9 0.3 6.5E-06 41.7 12.9 78 58-136 46-164 (233)
15 TIGR03094 sulfo_cyanin sulfocy 95.1 0.14 3E-06 42.5 7.9 33 104-136 157-189 (195)
16 COG4454 Uncharacterized copper 94.5 0.061 1.3E-06 43.4 4.3 77 55-132 63-157 (158)
17 TIGR03096 nitroso_cyanin nitro 94.0 0.11 2.3E-06 41.0 4.7 57 55-122 61-123 (135)
18 PRK10378 inactive ferrous ion 90.5 1.8 3.9E-05 39.4 8.7 29 101-134 90-118 (375)
19 TIGR02695 azurin azurin. Azuri 90.4 2.7 5.9E-05 32.7 8.5 29 101-130 91-124 (125)
20 PRK02888 nitrous-oxide reducta 90.0 1.2 2.6E-05 43.2 7.4 67 56-133 556-634 (635)
21 TIGR02376 Cu_nitrite_red nitri 88.5 1.3 2.7E-05 39.0 6.1 76 57-135 61-148 (311)
22 PF07732 Cu-oxidase_3: Multico 86.1 0.55 1.2E-05 35.5 2.1 78 57-134 28-116 (117)
23 PLN02354 copper ion binding / 85.7 7.2 0.00016 37.1 9.8 79 57-135 60-148 (552)
24 PLN02604 oxidoreductase 82.0 8 0.00017 36.8 8.5 78 56-135 56-146 (566)
25 PF00116 COX2: Cytochrome C ox 79.4 3.7 8E-05 31.2 4.4 64 57-131 48-119 (120)
26 TIGR02866 CoxB cytochrome c ox 78.7 5.4 0.00012 32.7 5.5 66 57-134 119-193 (201)
27 PLN02168 copper ion binding / 78.0 12 0.00025 35.7 8.2 79 57-135 59-147 (545)
28 PF02839 CBM_5_12: Carbohydrat 74.1 2.2 4.7E-05 26.0 1.5 19 50-68 1-19 (41)
29 MTH00047 COX2 cytochrome c oxi 72.4 5.4 0.00012 33.0 3.9 32 102-135 159-193 (194)
30 COG1622 CyoA Heme/copper-type 70.1 4 8.7E-05 35.1 2.7 32 102-135 180-214 (247)
31 TIGR03388 ascorbase L-ascorbat 68.2 11 0.00024 35.5 5.5 77 56-135 33-123 (541)
32 PLN00044 multi-copper oxidase- 67.9 57 0.0012 31.6 10.2 79 58-136 436-538 (596)
33 cd06555 ASCH_PF0470_like ASC-1 58.2 10 0.00023 28.7 2.7 29 57-85 30-60 (109)
34 KOG1263 Multicopper oxidases [ 57.5 1.8E+02 0.0039 28.1 11.5 75 57-136 61-150 (563)
35 TIGR01480 copper_res_A copper- 56.8 27 0.00059 33.6 5.9 73 56-131 500-586 (587)
36 PLN02792 oxidoreductase 53.6 95 0.002 29.6 8.9 79 58-136 406-508 (536)
37 PF07172 GRP: Glycine rich pro 53.5 11 0.00023 27.9 2.0 8 1-8 1-8 (95)
38 PLN00044 multi-copper oxidase- 53.5 31 0.00067 33.4 5.7 79 57-135 62-150 (596)
39 PF05382 Amidase_5: Bacterioph 51.6 38 0.00083 26.8 5.1 35 57-91 74-113 (145)
40 MTH00140 COX2 cytochrome c oxi 49.2 24 0.00051 29.7 3.8 31 102-134 183-216 (228)
41 PLN02191 L-ascorbate oxidase 49.1 41 0.0009 32.2 5.8 75 57-134 56-144 (574)
42 PLN02835 oxidoreductase 47.6 1.9E+02 0.0042 27.5 10.0 128 3-135 4-150 (539)
43 TIGR02228 sigpep_I_arch signal 46.4 84 0.0018 25.0 6.4 17 56-72 58-74 (158)
44 PF12961 DUF3850: Domain of Un 46.1 14 0.00029 26.2 1.5 13 56-68 26-38 (72)
45 PF09451 ATG27: Autophagy-rela 45.8 19 0.00042 30.9 2.8 31 20-55 215-245 (268)
46 PF02362 B3: B3 DNA binding do 42.0 20 0.00044 25.1 2.0 19 54-72 69-87 (100)
47 MTH00154 COX2 cytochrome c oxi 41.7 37 0.0008 28.6 3.8 31 102-134 183-216 (227)
48 PF07731 Cu-oxidase_2: Multico 41.3 47 0.001 24.6 4.0 32 102-133 105-136 (138)
49 PF05283 MGC-24: Multi-glycosy 40.6 59 0.0013 27.0 4.7 20 106-125 71-90 (186)
50 MTH00168 COX2 cytochrome c oxi 39.4 40 0.00087 28.3 3.7 31 102-134 183-216 (225)
51 TIGR01480 copper_res_A copper- 39.2 71 0.0015 30.8 5.7 77 57-134 78-163 (587)
52 PTZ00047 cytochrome c oxidase 38.6 44 0.00095 27.2 3.6 30 102-133 116-148 (162)
53 PLN02792 oxidoreductase 38.2 1.2E+02 0.0025 29.0 7.0 78 57-134 49-136 (536)
54 MTH00117 COX2 cytochrome c oxi 38.0 45 0.00098 28.1 3.8 31 102-134 183-216 (227)
55 MTH00139 COX2 cytochrome c oxi 37.8 42 0.0009 28.2 3.5 31 102-134 183-216 (226)
56 MTH00129 COX2 cytochrome c oxi 37.3 41 0.00089 28.4 3.4 31 102-134 183-216 (230)
57 smart00495 ChtBD3 Chitin-bindi 37.1 24 0.00051 21.3 1.5 18 50-67 1-18 (41)
58 MTH00098 COX2 cytochrome c oxi 36.7 46 0.00099 28.1 3.6 31 102-134 183-216 (227)
59 TIGR01433 CyoA cytochrome o ub 36.2 49 0.0011 27.9 3.7 31 102-134 182-215 (226)
60 PF02157 Man-6-P_recep: Mannos 36.0 12 0.00026 32.9 0.0 40 26-71 208-247 (278)
61 PF10377 ATG11: Autophagy-rela 35.4 27 0.00058 27.0 1.9 18 57-74 41-58 (129)
62 KOG1263 Multicopper oxidases [ 35.2 62 0.0014 31.1 4.7 36 102-137 506-541 (563)
63 MTH00038 COX2 cytochrome c oxi 35.2 53 0.0011 27.7 3.8 31 102-134 183-216 (229)
64 PF08194 DIM: DIM protein; In 34.7 62 0.0014 19.9 3.0 23 13-35 8-30 (36)
65 TIGR03389 laccase laccase, pla 34.3 1.1E+02 0.0025 28.8 6.2 78 58-136 37-125 (539)
66 TIGR01432 QOXA cytochrome aa3 34.2 44 0.00095 27.8 3.1 31 102-134 173-206 (217)
67 KOG2315 Predicted translation 34.1 83 0.0018 30.3 5.2 62 55-116 211-278 (566)
68 MTH00023 COX2 cytochrome c oxi 33.5 55 0.0012 27.8 3.6 31 102-134 194-227 (240)
69 PF12195 End_beta_barrel: Beta 33.2 26 0.00056 25.2 1.3 29 56-84 25-59 (83)
70 PF10670 DUF4198: Domain of un 32.5 1.5E+02 0.0032 23.5 5.8 58 58-115 146-209 (215)
71 cd05820 CBM20_novamyl Novamyl 32.1 32 0.00069 25.1 1.7 43 29-71 20-70 (103)
72 PF11604 CusF_Ec: Copper bindi 31.9 39 0.00084 23.2 2.0 24 51-74 35-58 (70)
73 MTH00008 COX2 cytochrome c oxi 31.7 61 0.0013 27.3 3.6 31 102-134 183-216 (228)
74 PLN03148 Blue copper-like prot 30.8 66 0.0014 26.2 3.5 7 58-64 22-28 (167)
75 PF00686 CBM_20: Starch bindin 30.5 54 0.0012 23.2 2.7 43 29-71 17-68 (96)
76 PF06376 DUF1070: Protein of u 30.3 95 0.0021 18.9 3.3 24 156-179 6-32 (34)
77 PLN02991 oxidoreductase 29.1 3.7E+02 0.008 25.7 8.7 35 102-136 481-515 (543)
78 PLN02354 copper ion binding / 29.1 4.8E+02 0.01 24.9 9.5 35 102-136 489-523 (552)
79 MTH00051 COX2 cytochrome c oxi 28.3 68 0.0015 27.2 3.3 31 102-134 187-220 (234)
80 MTH00076 COX2 cytochrome c oxi 28.0 72 0.0016 26.9 3.4 31 102-134 183-216 (228)
81 PF08980 DUF1883: Domain of un 26.5 15 0.00032 27.3 -0.9 73 57-132 9-86 (94)
82 PF14326 DUF4384: Domain of un 26.0 58 0.0013 22.6 2.2 17 58-74 2-18 (83)
83 cd05808 CBM20_alpha_amylase Al 25.9 61 0.0013 22.6 2.3 41 30-70 17-62 (95)
84 PF11766 Candida_ALS_N: Cell-w 25.8 44 0.00096 28.8 1.8 36 56-91 6-48 (249)
85 cd05810 CBM20_alpha_MTH Glucan 25.8 48 0.001 24.0 1.7 41 30-70 18-63 (97)
86 MTH00027 COX2 cytochrome c oxi 25.6 93 0.002 27.0 3.7 31 102-134 217-250 (262)
87 PF06462 Hyd_WA: Propeller; I 25.3 1.3E+02 0.0029 17.4 3.3 25 102-126 3-27 (32)
88 PLN02991 oxidoreductase 25.2 2.6E+02 0.0056 26.8 6.9 79 57-135 61-149 (543)
89 PRK10861 signal peptidase I; P 24.9 1.5E+02 0.0032 26.6 5.0 15 57-71 124-138 (324)
90 PF09792 But2: Ubiquitin 3 bin 24.7 1.1E+02 0.0024 24.0 3.7 32 102-136 100-131 (143)
91 PF12124 Nsp3_PL2pro: Coronavi 24.3 64 0.0014 21.8 1.9 21 49-69 14-42 (66)
92 COG3627 PhnJ Uncharacterized e 23.8 49 0.0011 28.4 1.6 25 101-125 257-281 (291)
93 PF01345 DUF11: Domain of unkn 22.4 66 0.0014 21.6 1.8 21 50-70 28-48 (76)
94 PF11153 DUF2931: Protein of u 22.3 75 0.0016 26.1 2.4 31 40-70 30-60 (216)
95 MTH00185 COX2 cytochrome c oxi 21.8 1.2E+02 0.0026 25.6 3.6 30 102-133 183-215 (230)
96 COG1430 Uncharacterized conser 21.4 56 0.0012 25.4 1.4 20 52-71 104-123 (126)
97 MTH00080 COX2 cytochrome c oxi 20.8 1.4E+02 0.003 25.3 3.8 31 102-134 186-219 (231)
98 cd05813 CBM20_genethonin_1 Gen 20.8 82 0.0018 22.2 2.1 40 31-70 19-61 (95)
99 PF05324 Sperm_Ag_HE2: Sperm a 20.3 94 0.002 21.9 2.2 32 5-38 2-34 (73)
100 KOG3416 Predicted nucleic acid 20.3 1.2E+02 0.0026 23.9 3.0 37 30-76 40-77 (134)
No 1
>PLN03148 Blue copper-like protein; Provisional
Probab=100.00 E-value=1.9e-42 Score=278.66 Aligned_cols=107 Identities=32% Similarity=0.653 Sum_probs=100.1
Q ss_pred HhhhcccceEEEEeCCCCCccCCCCCCccchhcccCCceecCCEEEeeeeCCCCeEEEEccccCCCCCCCCCcccccCCC
Q 030240 21 FSISFCEARDILVGGKTDSWKIPSSQSDSLNQWAEKTRFQVGDSLVWKYDATRDSVLQVTKEAYLSCNTSSPVAEYRDGN 100 (181)
Q Consensus 21 ll~~~a~a~~~~VGg~~G~W~~~~~~~~~Y~~WA~~~~f~vGD~LvF~y~~~~HsV~~V~~~~y~~C~~~~~~~~~s~G~ 100 (181)
++...++|++|+|||+.| |+...+ |++||++++|++||+|+|+|+++.|||+||++++|++|+..+++..+++|+
T Consensus 13 ~~~~~~~a~~~~VGd~~G-W~~~~~----Y~~WA~~k~F~VGD~LvF~Y~~~~hnV~~V~~~~Y~~C~~~~pi~~~tsG~ 87 (167)
T PLN03148 13 FSASATTATDHIVGANKG-WNPGIN----YTLWANNQTFYVGDLISFRYQKTQYNVFEVNQTGYDNCTTEGAAGNWTSGK 87 (167)
T ss_pred HhhhhccceEEEeCCCCC-cCCCCC----hhHhhcCCCCccCCEEEEEecCCCceEEEEChHHcCcccCCCCcceecCCC
Confidence 455678899999999999 996554 999999999999999999999999999999999999999999999999999
Q ss_pred cEEEecccccEEEEeCCCCCCcCCCeEEEEeec
Q 030240 101 TKVKLNKSGPFYFISGTKGSCEKGQKLIVVVMS 133 (181)
Q Consensus 101 ~~v~L~~~G~~YFic~v~~HC~~GmKl~I~V~~ 133 (181)
+.|+|+++|+|||||+ .+||++|||+.|+|.+
T Consensus 88 d~v~L~~~G~~YFIcg-~ghC~~GmKl~I~V~~ 119 (167)
T PLN03148 88 DFIPLNKAKRYYFICG-NGQCFNGMKVTILVHP 119 (167)
T ss_pred cEEEecCCccEEEEcC-CCccccCCEEEEEEcC
Confidence 9999999999999999 6999999999999964
No 2
>PF02298 Cu_bind_like: Plastocyanin-like domain; InterPro: IPR003245 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved. This domain is found in a variety of plant cyanins and pollern allergen. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 3.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1JER_A 1WS7_A 1WS8_D 1F56_B 1X9R_B 1X9U_A 2CBP_A.
Probab=99.97 E-value=2e-32 Score=198.51 Aligned_cols=85 Identities=47% Similarity=0.990 Sum_probs=70.5
Q ss_pred ccCCCCCCccchhcccCCceecCCEEEeeeeCCCCeEEEEccccCCCCCCCCCcccccCCCcEEEecccccEEEEeCCCC
Q 030240 40 WKIPSSQSDSLNQWAEKTRFQVGDSLVWKYDATRDSVLQVTKEAYLSCNTSSPVAEYRDGNTKVKLNKSGPFYFISGTKG 119 (181)
Q Consensus 40 W~~~~~~~~~Y~~WA~~~~f~vGD~LvF~y~~~~HsV~~V~~~~y~~C~~~~~~~~~s~G~~~v~L~~~G~~YFic~v~~ 119 (181)
|++++++ .+|++||++++|++||+|+|+|+++.|+|+||++++|++|+.++++..+++|++.|+|+++|++||||++++
T Consensus 1 W~~~~~~-~~Y~~Wa~~~~F~vGD~LvF~y~~~~h~V~~V~~~~y~~C~~~~~~~~~~~G~~~v~L~~~G~~YFic~~~~ 79 (85)
T PF02298_consen 1 WTIPTNA-SNYTDWASGKTFRVGDTLVFNYDSGQHSVVEVSKADYDSCNSSNPISTYSTGNDTVTLTKPGPHYFICGVPG 79 (85)
T ss_dssp SSSSSST-THHHHHHCTS-BETTEEEEEE--TTTB-EEEESHHHHHHT--STTSEEE-SSEEEEEE-SSEEEEEE--STT
T ss_pred CccCCCc-cchhHhhcCCcEeCCCEEEEEecCCCCeEEecChhhCccCCCCCceecccCCCEEEEeCCCcCeEEEeCCCC
Confidence 8888764 579999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCCC
Q 030240 120 SCEKGQ 125 (181)
Q Consensus 120 HC~~Gm 125 (181)
||++||
T Consensus 80 HC~~Gq 85 (85)
T PF02298_consen 80 HCQKGQ 85 (85)
T ss_dssp TTTTT-
T ss_pred cccccC
Confidence 999998
No 3
>PRK02710 plastocyanin; Provisional
Probab=98.91 E-value=2.5e-08 Score=76.04 Aligned_cols=115 Identities=14% Similarity=0.210 Sum_probs=69.2
Q ss_pred CcchhhHHHHHHHHHHHHHHHhhhcccceEEE--EeCCCCCccCCCCCCccchhcccCCceecCCEEEeeee-CCCCeEE
Q 030240 1 MAGFSRTLASSSLVLTSLVLFSISFCEARDIL--VGGKTDSWKIPSSQSDSLNQWAEKTRFQVGDSLVWKYD-ATRDSVL 77 (181)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~ll~~~a~a~~~~--VGg~~G~W~~~~~~~~~Y~~WA~~~~f~vGD~LvF~y~-~~~HsV~ 77 (181)
|+.+.|-++-.+|++++.+.+....+.+++++ +|.+.|+-.+.|+ ..++++||+|.|... ...||+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~a~a~~~~V~~~~~~~~~~F~P~----------~i~v~~Gd~V~~~N~~~~~H~v~ 70 (119)
T PRK02710 1 MAKRLRSIAAALVAVVSSFGLGVSSASAETVEVKMGSDAGMLAFEPS----------TLTIKAGDTVKWVNNKLAPHNAV 70 (119)
T ss_pred CchhHHHHHHHHHHHHHHHHhcccccccceEEEEEccCCCeeEEeCC----------EEEEcCCCEEEEEECCCCCceEE
Confidence 44455555433344444333333445566555 4554441344443 678999999998764 3579986
Q ss_pred EEccccCCCCCCCCCcccccCCC-cEEEecccccEEEEeCCCCCCcCCCeEEEEee
Q 030240 78 QVTKEAYLSCNTSSPVAEYRDGN-TKVKLNKSGPFYFISGTKGSCEKGQKLIVVVM 132 (181)
Q Consensus 78 ~V~~~~y~~C~~~~~~~~~s~G~-~~v~L~~~G~~YFic~v~~HC~~GmKl~I~V~ 132 (181)
--.. +....++ .....|. .+++++++|.|-|+|. .|=+.|||..|.|.
T Consensus 71 ~~~~---~~~~~~~--~~~~pg~t~~~tF~~~G~y~y~C~--~H~~~gM~G~I~V~ 119 (119)
T PRK02710 71 FDGA---KELSHKD--LAFAPGESWEETFSEAGTYTYYCE--PHRGAGMVGKITVE 119 (119)
T ss_pred ecCC---ccccccc--cccCCCCEEEEEecCCEEEEEEcC--CCccCCcEEEEEEC
Confidence 3211 1111111 1123443 5789999999999999 89999999999983
No 4
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=98.70 E-value=5.1e-08 Score=71.64 Aligned_cols=75 Identities=17% Similarity=0.282 Sum_probs=53.1
Q ss_pred CCceecCCEEEeeee-CCCCeEEEEccc--cCCCCCCCCC---cccccCCC-cEEEecccccEEEEeCCCCCCcCCCeEE
Q 030240 56 KTRFQVGDSLVWKYD-ATRDSVLQVTKE--AYLSCNTSSP---VAEYRDGN-TKVKLNKSGPFYFISGTKGSCEKGQKLI 128 (181)
Q Consensus 56 ~~~f~vGD~LvF~y~-~~~HsV~~V~~~--~y~~C~~~~~---~~~~s~G~-~~v~L~~~G~~YFic~v~~HC~~GmKl~ 128 (181)
..++++||+|.|... ...|++...+.. .-..++.... ......|. ..++++++|.|.|+|. + |...||+..
T Consensus 18 ~i~V~~G~tV~~~n~~~~~Hnv~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~tF~~~G~y~y~C~-P-H~~~GM~G~ 95 (99)
T PF00127_consen 18 EITVKAGDTVTFVNNDSMPHNVVFVADGMPAGADSDYVPPGDSSPLLAPGETYSVTFTKPGTYEYYCT-P-HYEAGMVGT 95 (99)
T ss_dssp EEEEETTEEEEEEEESSSSBEEEEETTSSHTTGGHCHHSTTCEEEEBSTTEEEEEEEESSEEEEEEET-T-TGGTTSEEE
T ss_pred EEEECCCCEEEEEECCCCCceEEEecccccccccccccCccccceecCCCCEEEEEeCCCeEEEEEcC-C-CcccCCEEE
Confidence 568899999999994 678999987521 0011211111 11123444 4788889999999999 8 999999999
Q ss_pred EEee
Q 030240 129 VVVM 132 (181)
Q Consensus 129 I~V~ 132 (181)
|.|.
T Consensus 96 i~V~ 99 (99)
T PF00127_consen 96 IIVE 99 (99)
T ss_dssp EEEE
T ss_pred EEEC
Confidence 9984
No 5
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=98.67 E-value=1.8e-07 Score=68.92 Aligned_cols=91 Identities=15% Similarity=0.210 Sum_probs=61.1
Q ss_pred EEEEeCCCCCccCCCCCCccchhcccCCceecCCEEEeeeeC-CCCeEEEEcccc-----CCCCCCCCCcccccCCC-cE
Q 030240 30 DILVGGKTDSWKIPSSQSDSLNQWAEKTRFQVGDSLVWKYDA-TRDSVLQVTKEA-----YLSCNTSSPVAEYRDGN-TK 102 (181)
Q Consensus 30 ~~~VGg~~G~W~~~~~~~~~Y~~WA~~~~f~vGD~LvF~y~~-~~HsV~~V~~~~-----y~~C~~~~~~~~~s~G~-~~ 102 (181)
++.||.++|+-.+.|+ ..++++||+|+|..+. ..|+++..+... ........-......|. .+
T Consensus 2 ~v~~g~~~g~~~F~P~----------~i~v~~G~~V~~~N~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~pG~t~~ 71 (99)
T TIGR02656 2 TVKMGADKGALVFEPA----------KISIAAGDTVEWVNNKGGPHNVVFDEDAVPAGVKELAKSLSHKDLLNSPGESYE 71 (99)
T ss_pred EEEEecCCCceeEeCC----------EEEECCCCEEEEEECCCCCceEEECCCCCccchhhhcccccccccccCCCCEEE
Confidence 5678876665677666 6689999999998643 579997542210 00011100001123344 47
Q ss_pred EEecccccEEEEeCCCCCCcCCCeEEEEee
Q 030240 103 VKLNKSGPFYFISGTKGSCEKGQKLIVVVM 132 (181)
Q Consensus 103 v~L~~~G~~YFic~v~~HC~~GmKl~I~V~ 132 (181)
++++.+|+|-|+|. .|++.||+..|.|.
T Consensus 72 ~tF~~~G~y~y~C~--~H~~aGM~G~I~V~ 99 (99)
T TIGR02656 72 VTFSTPGTYTFYCE--PHRGAGMVGKITVE 99 (99)
T ss_pred EEeCCCEEEEEEcC--CccccCCEEEEEEC
Confidence 88999999999999 89999999999884
No 6
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=98.49 E-value=9.6e-07 Score=67.53 Aligned_cols=90 Identities=17% Similarity=0.268 Sum_probs=62.2
Q ss_pred ccceEEEEe--CCCCCccCCCCCCccchhcccCCceecCCEEEeeeeC--CCCeEEEEccccCCCCCCCCCcccccCC-C
Q 030240 26 CEARDILVG--GKTDSWKIPSSQSDSLNQWAEKTRFQVGDSLVWKYDA--TRDSVLQVTKEAYLSCNTSSPVAEYRDG-N 100 (181)
Q Consensus 26 a~a~~~~VG--g~~G~W~~~~~~~~~Y~~WA~~~~f~vGD~LvF~y~~--~~HsV~~V~~~~y~~C~~~~~~~~~s~G-~ 100 (181)
+...++.|| ++.|+..+.|. ..++++||+|.|+++. ..|+|.-.....|+. ... ....| .
T Consensus 21 ~~~~~v~~G~~~~~g~~~F~P~----------~ltV~~GdTVtw~~~~d~~~HnV~s~~~~~f~s----~~~-~~~~G~t 85 (115)
T TIGR03102 21 QDEVTVDVGAEANGGGFAFDPP----------AIRVDPGTTVVWEWTGEGGGHNVVSDGDGDLDE----SER-VSEEGTT 85 (115)
T ss_pred CceEEEEecccCCCCceeEeCC----------EEEECCCCEEEEEECCCCCCEEEEECCCCCccc----ccc-ccCCCCE
Confidence 345678888 33333666555 5689999999999864 579997532233331 111 12333 4
Q ss_pred cEEEecccccEEEEeCCCCCCcCCCeEEEEee
Q 030240 101 TKVKLNKSGPFYFISGTKGSCEKGQKLIVVVM 132 (181)
Q Consensus 101 ~~v~L~~~G~~YFic~v~~HC~~GmKl~I~V~ 132 (181)
..++++++|.|-|+|. -|=..|||..|.|.
T Consensus 86 ~s~Tf~~~G~Y~Y~C~--pH~~~gM~G~I~V~ 115 (115)
T TIGR03102 86 YEHTFEEPGIYLYVCV--PHEALGMKGAVVVE 115 (115)
T ss_pred EEEEecCCcEEEEEcc--CCCCCCCEEEEEEC
Confidence 5899999999999999 58778999999984
No 7
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=98.31 E-value=5.7e-06 Score=64.48 Aligned_cols=85 Identities=14% Similarity=0.220 Sum_probs=60.3
Q ss_pred EEEEeCCCCCccCCCCCCccchhcccCCceecCCEEEeeeeCC-CCeEEEEccccCCCCCCCCCcccccCC---CcEEEe
Q 030240 30 DILVGGKTDSWKIPSSQSDSLNQWAEKTRFQVGDSLVWKYDAT-RDSVLQVTKEAYLSCNTSSPVAEYRDG---NTKVKL 105 (181)
Q Consensus 30 ~~~VGg~~G~W~~~~~~~~~Y~~WA~~~~f~vGD~LvF~y~~~-~HsV~~V~~~~y~~C~~~~~~~~~s~G---~~~v~L 105 (181)
...++.+.+.-.|.|. ..++.+||++.|.+... .|||.-.... ++ .....+..+ ..+.++
T Consensus 39 ~~~~~~~~~~~vF~PA----------~v~v~pGDTVtw~~~d~~~Hnv~~~~~~-----~~-~g~~~~~~~~~~s~~~Tf 102 (128)
T COG3794 39 SVNKGVDIGAMVFEPA----------EVTVKPGDTVTWVNTDSVGHNVTAVGGM-----DP-EGSGTLKAGINESFTHTF 102 (128)
T ss_pred eeeeeccCcceeEcCc----------EEEECCCCEEEEEECCCCCceEEEeCCC-----Cc-ccccccccCCCcceEEEe
Confidence 4445555442555555 66899999999999876 8999876433 11 111122222 247899
Q ss_pred cccccEEEEeCCCCCCcCCCeEEEEee
Q 030240 106 NKSGPFYFISGTKGSCEKGQKLIVVVM 132 (181)
Q Consensus 106 ~~~G~~YFic~v~~HC~~GmKl~I~V~ 132 (181)
+++|.|.|+|. -|=..|||..|.|.
T Consensus 103 e~~G~Y~Y~C~--PH~~~gM~G~IvV~ 127 (128)
T COG3794 103 ETPGEYTYYCT--PHPGMGMKGKIVVG 127 (128)
T ss_pred cccceEEEEec--cCCCCCcEEEEEeC
Confidence 99999999999 59899999999985
No 8
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=98.23 E-value=7.6e-06 Score=62.63 Aligned_cols=74 Identities=11% Similarity=0.077 Sum_probs=53.2
Q ss_pred CCceecCCEEEeeeeCCCCeEEEEccccCCCCCCCCCcccccCCCcEEEecccccEEEEeCCCCCCcCCCeEEEEeecC
Q 030240 56 KTRFQVGDSLVWKYDATRDSVLQVTKEAYLSCNTSSPVAEYRDGNTKVKLNKSGPFYFISGTKGSCEKGQKLIVVVMSS 134 (181)
Q Consensus 56 ~~~f~vGD~LvF~y~~~~HsV~~V~~~~y~~C~~~~~~~~~s~G~~~v~L~~~G~~YFic~v~~HC~~GmKl~I~V~~~ 134 (181)
..++++||+|.|.+....|+|........+. .+....-.+....++++++|.|-|+|. .|=..||+..|.|..+
T Consensus 16 ~v~V~~GdTV~f~n~d~~Hnv~~~~~~~p~g---~~~~~s~~g~~~~~tF~~~G~Y~Y~C~--pH~~~GM~G~V~Vg~~ 89 (116)
T TIGR02375 16 YIRAAPGDTVTFVPTDKGHNVETIKGMIPEG---AEAFKSKINEEYTVTVTEEGVYGVKCT--PHYGMGMVALIQVGDP 89 (116)
T ss_pred EEEECCCCEEEEEECCCCeeEEEccCCCcCC---cccccCCCCCEEEEEeCCCEEEEEEcC--CCccCCCEEEEEECCC
Confidence 5789999999999987789987642211111 011111112335889999999999999 7999999999999774
No 9
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=97.29 E-value=0.00097 Score=52.89 Aligned_cols=76 Identities=13% Similarity=0.166 Sum_probs=48.7
Q ss_pred CceecCCEEEeeeeCC----CCeEEEEccc-cCC------------CCCCCCCcccc--cCCCcEEEecccccEEEEeCC
Q 030240 57 TRFQVGDSLVWKYDAT----RDSVLQVTKE-AYL------------SCNTSSPVAEY--RDGNTKVKLNKSGPFYFISGT 117 (181)
Q Consensus 57 ~~f~vGD~LvF~y~~~----~HsV~~V~~~-~y~------------~C~~~~~~~~~--s~G~~~v~L~~~G~~YFic~v 117 (181)
.+++.||+++|...+. .|.....++. .+. .|....+.... ..+..+++++++|+|||.|.+
T Consensus 54 I~v~~Gd~V~v~v~N~~~~~~H~~~I~~~g~~~~~~p~mdG~~~~~~~~i~p~~~~g~~~~~~~tf~f~~aGtywyhC~~ 133 (148)
T TIGR03095 54 IVIPEGVTVHFTVINTDTDSGHNFDISKRGPPYPYMPGMDGLGFVAGTGFLPPPKSGKFGYTDFTYHFSTAGTYWYLCTY 133 (148)
T ss_pred EEEcCCCEEEEEEEeCCCCccccEEeecCCCccccccccCCCCccccCcccCCCCCCccceeEEEEECCCCeEEEEEcCC
Confidence 3568999999999764 5666554321 110 12111111000 002347778899999999999
Q ss_pred CCCCcCCCeEEEEee
Q 030240 118 KGSCEKGQKLIVVVM 132 (181)
Q Consensus 118 ~~HC~~GmKl~I~V~ 132 (181)
++|=+.||+-.|.|.
T Consensus 134 pgH~~~GM~G~iiV~ 148 (148)
T TIGR03095 134 PGHAENGMYGKIVVK 148 (148)
T ss_pred hhHHHCCCEEEEEEC
Confidence 999999999888773
No 10
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=97.28 E-value=0.0017 Score=46.19 Aligned_cols=70 Identities=16% Similarity=0.237 Sum_probs=47.0
Q ss_pred CCceecCCEEEeeeeC-CCCeEEEEccccCCCCCCCCCcccccCCC-cEEEecccccEEEEeCCCCCCcCCCeEEEEee
Q 030240 56 KTRFQVGDSLVWKYDA-TRDSVLQVTKEAYLSCNTSSPVAEYRDGN-TKVKLNKSGPFYFISGTKGSCEKGQKLIVVVM 132 (181)
Q Consensus 56 ~~~f~vGD~LvF~y~~-~~HsV~~V~~~~y~~C~~~~~~~~~s~G~-~~v~L~~~G~~YFic~v~~HC~~GmKl~I~V~ 132 (181)
..++++||+|.|+... ..|||...+... ..=+...+. ...|. .+++++++|+|-|.|.... .||..|.|.
T Consensus 12 ~i~v~~GdtVt~~N~d~~~Hnv~~~~g~~-~~~~~~~~~--~~~g~~~~~tf~~~G~y~y~C~~Hp----~M~G~v~V~ 83 (83)
T TIGR02657 12 ELHVKVGDTVTWINREAMPHNVHFVAGVL-GEAALKGPM--MKKEQAYSLTFTEAGTYDYHCTPHP----FMRGKVVVE 83 (83)
T ss_pred EEEECCCCEEEEEECCCCCccEEecCCCC-ccccccccc--cCCCCEEEEECCCCEEEEEEcCCCC----CCeEEEEEC
Confidence 4688999999998864 479997543221 110111111 23343 4889999999999999754 599998874
No 11
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=96.75 E-value=0.0083 Score=49.94 Aligned_cols=76 Identities=13% Similarity=0.210 Sum_probs=49.5
Q ss_pred cCCEEEeeeeCC---CCeEEEE-ccccCCCCCCC---CCccc-------------ccCCCcE---EEecccccEEEEeCC
Q 030240 61 VGDSLVWKYDAT---RDSVLQV-TKEAYLSCNTS---SPVAE-------------YRDGNTK---VKLNKSGPFYFISGT 117 (181)
Q Consensus 61 vGD~LvF~y~~~---~HsV~~V-~~~~y~~C~~~---~~~~~-------------~s~G~~~---v~L~~~G~~YFic~v 117 (181)
.|-++.|+|.+. .|++..+ +...+..+..- +.+.. ...|... +.-..+|.||+.|++
T Consensus 92 AGw~V~i~f~N~~~l~Hnl~iv~~~~~~p~~~~i~~DgkIl~~~G~s~~~~~~~GI~~G~s~~~~~~~l~aG~YwlvC~i 171 (196)
T PF06525_consen 92 AGWNVQITFTNQESLPHNLVIVQNDTPTPNNPPISSDGKILLYVGASPGNYTSNGISSGQSASGVYNDLPAGYYWLVCGI 171 (196)
T ss_pred CCCEEEEEEEcCCCCCeeEEEEeCCCCCCCccccCCCCceeeeccCCCCccccCCccCCceeeEEEccCCCceEEEEccC
Confidence 688999999754 7998877 33333333221 11110 0123222 212258999999999
Q ss_pred CCCCcCCCeEEEEeecCCC
Q 030240 118 KGSCEKGQKLIVVVMSSRR 136 (181)
Q Consensus 118 ~~HC~~GmKl~I~V~~~~~ 136 (181)
++|=+.||-..+.|.+...
T Consensus 172 pGHA~sGMw~~LiVs~~vt 190 (196)
T PF06525_consen 172 PGHAESGMWGVLIVSSNVT 190 (196)
T ss_pred CChhhcCCEEEEEEecCcc
Confidence 9999999999999987654
No 12
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=96.03 E-value=0.0054 Score=44.99 Aligned_cols=63 Identities=14% Similarity=0.217 Sum_probs=29.8
Q ss_pred CCceecCCEEEeeeeC---CCCeEEEEccccCCCCCCCCCcccccCCCc-EEEe--cccccEEEEeCCCCCCcCCCeEEE
Q 030240 56 KTRFQVGDSLVWKYDA---TRDSVLQVTKEAYLSCNTSSPVAEYRDGNT-KVKL--NKSGPFYFISGTKGSCEKGQKLIV 129 (181)
Q Consensus 56 ~~~f~vGD~LvF~y~~---~~HsV~~V~~~~y~~C~~~~~~~~~s~G~~-~v~L--~~~G~~YFic~v~~HC~~GmKl~I 129 (181)
..+++.|+.+.+.+.+ ..|++.. .+ .+.......|.+ ++++ .++|.|=|+|+...+ ||..|
T Consensus 36 ~i~v~~G~~v~l~~~N~~~~~h~~~i-~~--------~~~~~~l~~g~~~~~~f~~~~~G~y~~~C~~~~~----m~G~l 102 (104)
T PF13473_consen 36 TITVKAGQPVTLTFTNNDSRPHEFVI-PD--------LGISKVLPPGETATVTFTPLKPGEYEFYCTMHPN----MKGTL 102 (104)
T ss_dssp EEEEETTCEEEEEEEE-SSS-EEEEE-GG--------GTEEEEE-TT-EEEEEEEE-S-EEEEEB-SSS-T----TB---
T ss_pred EEEEcCCCeEEEEEEECCCCcEEEEE-CC--------CceEEEECCCCEEEEEEcCCCCEEEEEEcCCCCc----ceecc
Confidence 5689999966666653 3455533 11 111122334433 4554 899999999997663 66555
Q ss_pred Ee
Q 030240 130 VV 131 (181)
Q Consensus 130 ~V 131 (181)
.|
T Consensus 103 iV 104 (104)
T PF13473_consen 103 IV 104 (104)
T ss_dssp --
T ss_pred cC
Confidence 44
No 13
>PF00812 Ephrin: Ephrin; InterPro: IPR001799 Ephrins are a family of proteins [] that are ligands of class V (EPH-related) receptor protein-tyrosine kinases (see IPR001426 from INTERPRO). These receptors and their ligands have been implicated in regulating neuronal axon guidance and in patterning of the developing nervous system and may also serve a patterning and compartmentalisation role outside of the nervous system as well. Ephrins are membrane-attached proteins of 205 to 340 residues. Attachment appears to be crucial for their normal function. Type-A ephrins are linked to the membrane via a glycosylphosphatidylinositol (GPI)-linkage, while type-B ephrins are type-I membrane proteins.; GO: 0016020 membrane; PDB: 3HEI_P 3CZU_B 3MBW_B 1KGY_E 1IKO_P 2WO3_B 2I85_A 2VSK_B 3GXU_B 2VSM_B ....
Probab=95.97 E-value=0.0051 Score=48.91 Aligned_cols=76 Identities=28% Similarity=0.453 Sum_probs=45.0
Q ss_pred CceecCCEEEeeeeC---C--------CCeEEEEccccCCCCCCCC-Ccccc------c-CCCcEEEec-----------
Q 030240 57 TRFQVGDSLVWKYDA---T--------RDSVLQVTKEAYLSCNTSS-PVAEY------R-DGNTKVKLN----------- 106 (181)
Q Consensus 57 ~~f~vGD~LvF~y~~---~--------~HsV~~V~~~~y~~C~~~~-~~~~~------s-~G~~~v~L~----------- 106 (181)
...++||.|.+-=.. . ...+++|++++|+.|+... +...+ . .|+.++++.
T Consensus 24 i~V~i~D~ldIiCP~~~~~~~~~~~~E~~~lY~Vs~~~y~~C~~~~~~~~l~~C~~P~~~~~~~kft~kFq~fSP~p~G~ 103 (145)
T PF00812_consen 24 IEVRIGDYLDIICPHYEPGGPPPEEYEYYILYMVSEEGYESCSLTSRPRLLWECDRPEAPHGPKKFTIKFQEFSPFPLGL 103 (145)
T ss_dssp EEE-TTEEEEEEE--SSSSSSSCSSS-BEEEEEE-HHHHHHTBSSTSEEEEEEE-TTTSTTSSEEEEEESSSS-SSTTSS
T ss_pred EEecCCCEEEEECCCCCCCCCCCCCceEEEEEEEcHHHhcccCCCCCCcEEEEeCCCCCCCCCcEEEEEEEECCCCCCCe
Confidence 357799999885432 2 3457899999999999642 22111 1 233333321
Q ss_pred --ccc-cEEEEeCC-----------CCCCcC-CCeEEEEee
Q 030240 107 --KSG-PFYFISGT-----------KGSCEK-GQKLIVVVM 132 (181)
Q Consensus 107 --~~G-~~YFic~v-----------~~HC~~-GmKl~I~V~ 132 (181)
++| .||||++- +|-|.. .||+.|.|.
T Consensus 104 EF~pG~~YY~ISts~g~~~g~~~~~gG~C~~~~mkl~~~v~ 144 (145)
T PF00812_consen 104 EFQPGHDYYYISTSTGTQEGLDNRRGGLCLSHNMKLRIKVG 144 (145)
T ss_dssp S--TTEEEEEEEEESSSSTTTTSSBSCHHHEEEEEEEEECT
T ss_pred eecCCCeEEEEEccCCCCCCcccccccccCcCeeEEEEecC
Confidence 356 68999862 233874 789998874
No 14
>KOG3858 consensus Ephrin, ligand for Eph receptor tyrosine kinase [Signal transduction mechanisms]
Probab=95.86 E-value=0.3 Score=41.75 Aligned_cols=78 Identities=28% Similarity=0.455 Sum_probs=46.8
Q ss_pred ceecCCEEEee---eeCC-C-----CeEEEEccccCCCCCC-CCCcccc------------------cCCCcEEEecccc
Q 030240 58 RFQVGDSLVWK---YDAT-R-----DSVLQVTKEAYLSCNT-SSPVAEY------------------RDGNTKVKLNKSG 109 (181)
Q Consensus 58 ~f~vGD~LvF~---y~~~-~-----HsV~~V~~~~y~~C~~-~~~~~~~------------------s~G~~~v~L~~~G 109 (181)
-.++||.|-+- |+.+ . .-+++|++++|+.|+. +.+...+ +.-...+.+. +|
T Consensus 46 ~v~igD~ldIiCP~~e~~~~~~~E~yilYmV~~~~y~~C~~~s~~~~~~~C~rP~~~~kfsikFq~ftP~p~G~EF~-pG 124 (233)
T KOG3858|consen 46 YVQIGDYLDIICPHYEEGGPEGYEYYILYMVSEEEYDLCELRSKPFKRWECNRPSTPLKFSIKFQRFTPFPLGFEFQ-PG 124 (233)
T ss_pred EeccCCEEEEECCCCCCCCCCcceEEEEEEeChHHhhhhhccCCCcEEEEecCCCcchhhhhhheecCCCCCCcccc-CC
Confidence 45579999774 4322 1 2357899999999997 3332111 1111122333 55
Q ss_pred -cEEEEeC-----------CCCCCcC-CCeEEEEeecCCC
Q 030240 110 -PFYFISG-----------TKGSCEK-GQKLIVVVMSSRR 136 (181)
Q Consensus 110 -~~YFic~-----------v~~HC~~-GmKl~I~V~~~~~ 136 (181)
+||||++ .++-|.. .||+.+.|.....
T Consensus 125 ~~YY~IStStg~~~g~~~~~ggvc~~~~mk~~~~V~~~~~ 164 (233)
T KOG3858|consen 125 HTYYYISTSTGDAEGLCNLRGGVCVTRNMKLLMKVGQSPR 164 (233)
T ss_pred CeEEEEeCCCccccccchhhCCEeccCCceEEEEecccCC
Confidence 7888886 2345664 6999999887543
No 15
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=95.07 E-value=0.14 Score=42.48 Aligned_cols=33 Identities=24% Similarity=0.496 Sum_probs=28.0
Q ss_pred EecccccEEEEeCCCCCCcCCCeEEEEeecCCC
Q 030240 104 KLNKSGPFYFISGTKGSCEKGQKLIVVVMSSRR 136 (181)
Q Consensus 104 ~L~~~G~~YFic~v~~HC~~GmKl~I~V~~~~~ 136 (181)
+-..+|.||+.|++++|-+.||=..+.|.+...
T Consensus 157 ~~~~~G~YwlvCgipGHAesGMw~~lIVSs~vt 189 (195)
T TIGR03094 157 NDTSAGKYWLVCGITGHAESGMWAVVIVSSNVT 189 (195)
T ss_pred ccCCCeeEEEEcccCChhhcCcEEEEEEecCcc
Confidence 334789999999999999999988888877644
No 16
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=94.46 E-value=0.061 Score=43.37 Aligned_cols=77 Identities=14% Similarity=0.208 Sum_probs=49.7
Q ss_pred cCCceecCCEEEeeeeCC---CCeEEEEcccc-----CCC--------CCCCCCc--ccccCCCcEEEecccccEEEEeC
Q 030240 55 EKTRFQVGDSLVWKYDAT---RDSVLQVTKEA-----YLS--------CNTSSPV--AEYRDGNTKVKLNKSGPFYFISG 116 (181)
Q Consensus 55 ~~~~f~vGD~LvF~y~~~---~HsV~~V~~~~-----y~~--------C~~~~~~--~~~s~G~~~v~L~~~G~~YFic~ 116 (181)
++..++-|-+++|.-.+. .|....- +.+ +.. =+..+.+ ....+|...+.++++|.|=|+|.
T Consensus 63 ~~~~v~aG~tv~~v~~n~~el~hef~~~-~~~~~~~~~~~~~~~~Dme~d~~~~v~L~PG~s~elvv~ft~~g~ye~~C~ 141 (158)
T COG4454 63 SSFEVKAGETVRFVLKNEGELKHEFTMD-APDKNLEHVTHMILADDMEHDDPNTVTLAPGKSGELVVVFTGAGKYEFACN 141 (158)
T ss_pred CcccccCCcEEeeeecCcccceEEEecc-CccccchhHHHhhhCCccccCCcceeEeCCCCcEEEEEEecCCccEEEEec
Confidence 456788999998887654 3444321 111 000 1111111 11233445788899999999999
Q ss_pred CCCCCcCCCeEEEEee
Q 030240 117 TKGSCEKGQKLIVVVM 132 (181)
Q Consensus 117 v~~HC~~GmKl~I~V~ 132 (181)
+++|-+.||...|+|.
T Consensus 142 iPGHy~AGM~g~itV~ 157 (158)
T COG4454 142 IPGHYEAGMVGEITVS 157 (158)
T ss_pred CCCcccCCcEEEEEeC
Confidence 9999999999999985
No 17
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=93.99 E-value=0.11 Score=41.03 Aligned_cols=57 Identities=19% Similarity=0.237 Sum_probs=35.9
Q ss_pred cCCceecCCEEEeeeeCC---CCeEEEEccccCCCCCCCCCcccccCCCc---EEEecccccEEEEeCCCCCCc
Q 030240 55 EKTRFQVGDSLVWKYDAT---RDSVLQVTKEAYLSCNTSSPVAEYRDGNT---KVKLNKSGPFYFISGTKGSCE 122 (181)
Q Consensus 55 ~~~~f~vGD~LvF~y~~~---~HsV~~V~~~~y~~C~~~~~~~~~s~G~~---~v~L~~~G~~YFic~v~~HC~ 122 (181)
+..+++.||.+.+.+.+. .|++.. .+|. .+ .....|.+ +++.+++|+|.|+|+. ||.
T Consensus 61 ~~I~VkaGD~Vtl~vtN~d~~~H~f~i---~~~g---is---~~I~pGet~TitF~adKpG~Y~y~C~~--HP~ 123 (135)
T TIGR03096 61 EALVVKKGTPVKVTVENKSPISEGFSI---DAYG---IS---EVIKAGETKTISFKADKAGAFTIWCQL--HPK 123 (135)
T ss_pred CEEEECCCCEEEEEEEeCCCCccceEE---CCCC---cc---eEECCCCeEEEEEECCCCEEEEEeCCC--CCh
Confidence 456789999999988642 354432 2221 11 12233433 5777999999999996 664
No 18
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=90.49 E-value=1.8 Score=39.43 Aligned_cols=29 Identities=17% Similarity=0.272 Sum_probs=20.4
Q ss_pred cEEEecccccEEEEeCCCCCCcCCCeEEEEeecC
Q 030240 101 TKVKLNKSGPFYFISGTKGSCEKGQKLIVVVMSS 134 (181)
Q Consensus 101 ~~v~L~~~G~~YFic~v~~HC~~GmKl~I~V~~~ 134 (181)
..++| ++|+|-|+|+. | ..||-.|.|..+
T Consensus 90 l~~~L-~pGtY~~~C~~--~--~~~~g~l~Vtg~ 118 (375)
T PRK10378 90 MTANL-QPGEYDMTCGL--L--TNPKGKLIVKGE 118 (375)
T ss_pred EEEec-CCceEEeecCc--C--CCCCceEEEeCC
Confidence 34556 69999999975 4 335777888653
No 19
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=90.42 E-value=2.7 Score=32.73 Aligned_cols=29 Identities=21% Similarity=0.309 Sum_probs=22.0
Q ss_pred cEEEec----cccc-EEEEeCCCCCCcCCCeEEEE
Q 030240 101 TKVKLN----KSGP-FYFISGTKGSCEKGQKLIVV 130 (181)
Q Consensus 101 ~~v~L~----~~G~-~YFic~v~~HC~~GmKl~I~ 130 (181)
++|+++ ++|. |=|+|++++|=. .||..+.
T Consensus 91 ~svtF~~~~l~~g~~Y~f~CSFPGH~~-~MkG~l~ 124 (125)
T TIGR02695 91 TSVTFDVSKLSAGEDYTFFCSFPGHWA-MMRGTVK 124 (125)
T ss_pred EEEEEECCCCCCCCcceEEEcCCCcHH-hceEEEe
Confidence 456665 3675 999999999986 6887664
No 20
>PRK02888 nitrous-oxide reductase; Validated
Probab=89.95 E-value=1.2 Score=43.17 Aligned_cols=67 Identities=12% Similarity=0.149 Sum_probs=42.9
Q ss_pred CCceecCCEEEeeeeCC------CCeEEEEccccCCCCCCCCCcccccCCC---cEEEecccccEEEEeCCCCCCc---C
Q 030240 56 KTRFQVGDSLVWKYDAT------RDSVLQVTKEAYLSCNTSSPVAEYRDGN---TKVKLNKSGPFYFISGTKGSCE---K 123 (181)
Q Consensus 56 ~~~f~vGD~LvF~y~~~------~HsV~~V~~~~y~~C~~~~~~~~~s~G~---~~v~L~~~G~~YFic~v~~HC~---~ 123 (181)
..+++.||.+.|..++- .|..... .| +.......|. ..|+.++||.|||+|+. .|- .
T Consensus 556 ~i~Vk~GDeVt~~lTN~d~~~DViHGF~Ip---~~------nI~~dv~PG~t~svtF~adkPGvy~~~Cte--fCGa~H~ 624 (635)
T PRK02888 556 EFTVKQGDEVTVIVTNLDKVEDLTHGFAIP---NY------GVNMEVAPQATASVTFTADKPGVYWYYCTW--FCHALHM 624 (635)
T ss_pred eEEecCCCEEEEEEEeCCcccccccceeec---cc------CccEEEcCCceEEEEEEcCCCEEEEEECCc--ccccCcc
Confidence 45789999999999862 2333221 11 1111223343 35778999999999996 344 3
Q ss_pred CCeEEEEeec
Q 030240 124 GQKLIVVVMS 133 (181)
Q Consensus 124 GmKl~I~V~~ 133 (181)
+|+..|.|.+
T Consensus 625 ~M~G~~iVep 634 (635)
T PRK02888 625 EMRGRMLVEP 634 (635)
T ss_pred cceEEEEEEe
Confidence 6888888864
No 21
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=88.52 E-value=1.3 Score=39.03 Aligned_cols=76 Identities=13% Similarity=0.174 Sum_probs=48.4
Q ss_pred CceecCCEEEeeeeCC-----CCeEEEEccccCCCCCCCCCcccccCCC---cEEEecccccEEEEeCC----CCCCcCC
Q 030240 57 TRFQVGDSLVWKYDAT-----RDSVLQVTKEAYLSCNTSSPVAEYRDGN---TKVKLNKSGPFYFISGT----KGSCEKG 124 (181)
Q Consensus 57 ~~f~vGD~LvF~y~~~-----~HsV~~V~~~~y~~C~~~~~~~~~s~G~---~~v~L~~~G~~YFic~v----~~HC~~G 124 (181)
.+++.||+++.++.+. .|++..=-.... +..........|. ..|+++.+|+|||-|.. ..|=..|
T Consensus 61 irv~~Gd~v~v~v~N~~~~~~~h~~h~H~~~~~---dg~~~~~~I~PG~t~ty~F~~~~~Gty~YH~H~~~~~~~q~~~G 137 (311)
T TIGR02376 61 IRVHEGDYVELTLINPPTNTMPHNVDFHAATGA---LGGAALTQVNPGETATLRFKATRPGAFVYHCAPPGMVPWHVVSG 137 (311)
T ss_pred EEEECCCEEEEEEEeCCCCCCceeeeecCCCcc---CCCCcceeECCCCeEEEEEEcCCCEEEEEEcCCCCchhHHhhcC
Confidence 4688999999988764 466543100000 0001111234444 26778899999999995 4587889
Q ss_pred CeEEEEeecCC
Q 030240 125 QKLIVVVMSSR 135 (181)
Q Consensus 125 mKl~I~V~~~~ 135 (181)
|...+.|....
T Consensus 138 l~G~liV~~~~ 148 (311)
T TIGR02376 138 MNGAIMVLPRE 148 (311)
T ss_pred cceEEEeeccC
Confidence 99999998643
No 22
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=86.13 E-value=0.55 Score=35.47 Aligned_cols=78 Identities=17% Similarity=0.187 Sum_probs=46.5
Q ss_pred CceecCCEEEeeeeCC---CCeEEEE----cccc-CCC--CCCCCCcccccCCCcEEEecc-cccEEEEeCCCCCCcCCC
Q 030240 57 TRFQVGDSLVWKYDAT---RDSVLQV----TKEA-YLS--CNTSSPVAEYRDGNTKVKLNK-SGPFYFISGTKGSCEKGQ 125 (181)
Q Consensus 57 ~~f~vGD~LvF~y~~~---~HsV~~V----~~~~-y~~--C~~~~~~~~~s~G~~~v~L~~-~G~~YFic~v~~HC~~Gm 125 (181)
..++.||+|..++.+. .+++..= +... .|. .....++....+-...+++++ +|+|||-|-..+|=..||
T Consensus 28 I~v~~Gd~v~i~~~N~l~~~~siH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~Y~~~~~~~~Gt~wYH~H~~~~~~~GL 107 (117)
T PF07732_consen 28 IRVREGDTVRITVTNNLDEPTSIHWHGLHQPPSPWMDGVPGVTQCPIAPGESFTYEFTANQQAGTYWYHSHVHGQQVMGL 107 (117)
T ss_dssp EEEETTEEEEEEEEEESSSGBSEEEETSBSTTGGGGSGGTTTSGSSBSTTEEEEEEEEESSCSEEEEEEECSTTHHHTTE
T ss_pred EEEEcCCeeEEEEEeccccccccccceeeeeeeeecCCcccccceeEEeecceeeeEeeeccccceeEeeCCCchhcCcC
Confidence 5688999999999753 4455321 1110 111 111112211111123678888 999999999988544899
Q ss_pred eEEEEeecC
Q 030240 126 KLIVVVMSS 134 (181)
Q Consensus 126 Kl~I~V~~~ 134 (181)
--.|.|...
T Consensus 108 ~G~~iV~~~ 116 (117)
T PF07732_consen 108 YGAIIVEPP 116 (117)
T ss_dssp EEEEEEE-T
T ss_pred EEEEEEcCC
Confidence 988888754
No 23
>PLN02354 copper ion binding / oxidoreductase
Probab=85.74 E-value=7.2 Score=37.14 Aligned_cols=79 Identities=11% Similarity=0.041 Sum_probs=47.9
Q ss_pred CceecCCEEEeeeeCC--------CCeEEEEccccCCC-CCCCCCcccccCCCcEEEe-cccccEEEEeCCCCCCcCCCe
Q 030240 57 TRFQVGDSLVWKYDAT--------RDSVLQVTKEAYLS-CNTSSPVAEYRDGNTKVKL-NKSGPFYFISGTKGSCEKGQK 126 (181)
Q Consensus 57 ~~f~vGD~LvF~y~~~--------~HsV~~V~~~~y~~-C~~~~~~~~~s~G~~~v~L-~~~G~~YFic~v~~HC~~GmK 126 (181)
..++.||+|+.+..+. -|-+.+-.....|. -...-|+....+=..+|++ ++.|+|||=+-...+-..|+.
T Consensus 60 I~~~~GD~v~V~v~N~l~~~ttiHWHGi~q~~~~~~DGv~~TQcpI~PG~sf~Y~F~~~~q~GT~WYHsH~~~Q~~~Gl~ 139 (552)
T PLN02354 60 INSTSNNNIVINVFNNLDEPFLLTWSGIQQRKNSWQDGVPGTNCPIPPGTNFTYHFQPKDQIGSYFYYPSTGMHRAAGGF 139 (552)
T ss_pred EEEeCCCEEEEEEEECCCCCcccccccccCCCCcccCCCcCCcCCCCCCCcEEEEEEeCCCCcceEEecCccceecCCcc
Confidence 5678999999988654 24444331111121 0001133221111236776 478999999988888889999
Q ss_pred EEEEeecCC
Q 030240 127 LIVVVMSSR 135 (181)
Q Consensus 127 l~I~V~~~~ 135 (181)
..|.|....
T Consensus 140 G~lII~~~~ 148 (552)
T PLN02354 140 GGLRVNSRL 148 (552)
T ss_pred ceEEEcCCc
Confidence 999987653
No 24
>PLN02604 oxidoreductase
Probab=82.05 E-value=8 Score=36.79 Aligned_cols=78 Identities=13% Similarity=0.160 Sum_probs=49.2
Q ss_pred CCceecCCEEEeeeeCC----CCeEEE--Ec--ccc-CCCCCCCC-CcccccCCC---cEEEecccccEEEEeCCCCCCc
Q 030240 56 KTRFQVGDSLVWKYDAT----RDSVLQ--VT--KEA-YLSCNTSS-PVAEYRDGN---TKVKLNKSGPFYFISGTKGSCE 122 (181)
Q Consensus 56 ~~~f~vGD~LvF~y~~~----~HsV~~--V~--~~~-y~~C~~~~-~~~~~s~G~---~~v~L~~~G~~YFic~v~~HC~ 122 (181)
...++.||+++++..+. .|++.. +. ... +|. ... .......|. .+|+++++|++||=|-...|-.
T Consensus 56 ~i~~~~Gd~v~v~v~N~l~~~~~~iH~HG~~~~~~~~~DG--~~~~tq~~i~pg~s~~y~f~~~~~Gt~wyH~H~~~q~~ 133 (566)
T PLN02604 56 TILAQQGDTVIVELKNSLLTENVAIHWHGIRQIGTPWFDG--TEGVTQCPILPGETFTYEFVVDRPGTYLYHAHYGMQRE 133 (566)
T ss_pred cEEEECCCEEEEEEEeCCCCCCCCEEeCCCCCCCCccccC--CCccccCccCCCCeEEEEEEcCCCEEEEEeeCcHHHHh
Confidence 46788999999998754 234421 10 001 111 000 000123343 3677889999999999999999
Q ss_pred CCCeEEEEeecCC
Q 030240 123 KGQKLIVVVMSSR 135 (181)
Q Consensus 123 ~GmKl~I~V~~~~ 135 (181)
.||.-.|.|....
T Consensus 134 ~Gl~G~liV~~~~ 146 (566)
T PLN02604 134 AGLYGSIRVSLPR 146 (566)
T ss_pred CCCeEEEEEEecC
Confidence 9999999988653
No 25
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=79.36 E-value=3.7 Score=31.18 Aligned_cols=64 Identities=16% Similarity=0.213 Sum_probs=39.5
Q ss_pred CceecCCEEEeeeeCC--CCeEEEEccccCCCCCCCCCcccccCCC---cEEEecccccEEEEeCCCCCCcCC---CeEE
Q 030240 57 TRFQVGDSLVWKYDAT--RDSVLQVTKEAYLSCNTSSPVAEYRDGN---TKVKLNKSGPFYFISGTKGSCEKG---QKLI 128 (181)
Q Consensus 57 ~~f~vGD~LvF~y~~~--~HsV~~V~~~~y~~C~~~~~~~~~s~G~---~~v~L~~~G~~YFic~v~~HC~~G---mKl~ 128 (181)
..+..|+.+.|+.++. -|+...-. + +....--.|. ..++.+++|.|++.|+. .|-.| |+..
T Consensus 48 l~lp~g~~v~~~ltS~DViHsf~ip~---~------~~k~d~~PG~~~~~~~~~~~~G~y~~~C~e--~CG~gH~~M~~~ 116 (120)
T PF00116_consen 48 LVLPAGQPVRFHLTSEDVIHSFWIPE---L------GIKMDAIPGRTNSVTFTPDKPGTYYGQCAE--YCGAGHSFMPGK 116 (120)
T ss_dssp EEEETTSEEEEEEEESSS-EEEEETT---C------TEEEEEBTTCEEEEEEEESSSEEEEEEE-S--SSSTTGGG-EEE
T ss_pred ecccccceEeEEEEcCCccccccccc---c------CcccccccccceeeeeeeccCCcEEEcCcc--ccCcCcCCCeEE
Confidence 4567899999988752 45554311 0 0011112343 36788999999999994 78876 8888
Q ss_pred EEe
Q 030240 129 VVV 131 (181)
Q Consensus 129 I~V 131 (181)
|.|
T Consensus 117 v~V 119 (120)
T PF00116_consen 117 VIV 119 (120)
T ss_dssp EEE
T ss_pred EEE
Confidence 776
No 26
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=78.69 E-value=5.4 Score=32.71 Aligned_cols=66 Identities=14% Similarity=0.085 Sum_probs=41.3
Q ss_pred CceecCCEEEeeeeCC--CCeEEEEccccCCCCCCCCCccc-ccCCC---cEEEecccccEEEEeCCCCCCc---CCCeE
Q 030240 57 TRFQVGDSLVWKYDAT--RDSVLQVTKEAYLSCNTSSPVAE-YRDGN---TKVKLNKSGPFYFISGTKGSCE---KGQKL 127 (181)
Q Consensus 57 ~~f~vGD~LvF~y~~~--~HsV~~V~~~~y~~C~~~~~~~~-~s~G~---~~v~L~~~G~~YFic~v~~HC~---~GmKl 127 (181)
..+.+|+.++|+-++. .|+....+ -..+. --.|. ..++.+++|.|+..|+. .|- ..|++
T Consensus 119 l~vp~g~~v~~~~ts~DV~Hsf~ip~----------~~~k~da~PG~~~~~~~~~~~~G~y~~~c~e--~cG~~h~~M~~ 186 (201)
T TIGR02866 119 LVVPAGTPVRLQVTSKDVIHSFWVPE----------LGGKIDAIPGQYNALWFNADEPGVYYGYCAE--LCGAGHSLMLF 186 (201)
T ss_pred EEEEcCCEEEEEEEeCchhhcccccc----------cCceEEecCCcEEEEEEEeCCCEEEEEEehh--hCCcCccCCeE
Confidence 3567889998888652 23332211 11111 12332 35688999999999996 454 45999
Q ss_pred EEEeecC
Q 030240 128 IVVVMSS 134 (181)
Q Consensus 128 ~I~V~~~ 134 (181)
.|.|.+.
T Consensus 187 ~v~v~~~ 193 (201)
T TIGR02866 187 KVVVVER 193 (201)
T ss_pred EEEEECH
Confidence 9998764
No 27
>PLN02168 copper ion binding / pectinesterase
Probab=78.03 E-value=12 Score=35.74 Aligned_cols=79 Identities=6% Similarity=0.055 Sum_probs=48.3
Q ss_pred CceecCCEEEeeeeCC---C-----CeEEEEccccCCC-CCCCCCcccccCCCcEEEec-ccccEEEEeCCCCCCcCCCe
Q 030240 57 TRFQVGDSLVWKYDAT---R-----DSVLQVTKEAYLS-CNTSSPVAEYRDGNTKVKLN-KSGPFYFISGTKGSCEKGQK 126 (181)
Q Consensus 57 ~~f~vGD~LvF~y~~~---~-----HsV~~V~~~~y~~-C~~~~~~~~~s~G~~~v~L~-~~G~~YFic~v~~HC~~GmK 126 (181)
..++.||+|+.+..+. . |.+.+......|. ....-++....+=..+|+++ ++|+|||=+-...+=..|+.
T Consensus 59 I~~~~GD~v~V~v~N~L~~~ttiHWHGl~~~~~~~~DGv~gtQcpI~PG~sftY~F~~~~q~GT~WYHsH~~~Q~~~GL~ 138 (545)
T PLN02168 59 LNATANDVINVNIFNNLTEPFLMTWNGLQLRKNSWQDGVRGTNCPILPGTNWTYRFQVKDQIGSYFYFPSLLLQKAAGGY 138 (545)
T ss_pred EEEECCCEEEEEEEeCCCCCccEeeCCccCCCCCCcCCCCCCcCCCCCCCcEEEEEEeCCCCceEEEecChhhhhhCcce
Confidence 5788999999999764 1 4444332211121 01111332222222367774 79999999987776678999
Q ss_pred EEEEeecCC
Q 030240 127 LIVVVMSSR 135 (181)
Q Consensus 127 l~I~V~~~~ 135 (181)
..|.|....
T Consensus 139 G~lII~~~~ 147 (545)
T PLN02168 139 GAIRIYNPE 147 (545)
T ss_pred eEEEEcCCc
Confidence 999987654
No 28
>PF02839 CBM_5_12: Carbohydrate binding domain; InterPro: IPR003610 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM5 from CAZY and CBM12 from CAZY. These modules have a core structure consisting of a 3-stranded meander beta-sheet, which contain six aromatic groups that may be important for binding. CBM5/12 is found in proteins such as chitinase A1, chitinase B [], and endoglucanase Z []. The overall topology of the CBM is structurally similar to the C-terminal chitin-binding domains (ChBD) of chitinase A1 and chitinase B, however the binding mechanism for the ChBD may be different from that of the CBM [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0005576 extracellular region; PDB: 1ED7_A 1W1V_A 1E15_B 1UR8_A 1E6Z_B 1E6P_A 1W1T_A 1W1P_B 1UR9_A 1E6R_A ....
Probab=74.09 E-value=2.2 Score=26.04 Aligned_cols=19 Identities=21% Similarity=0.636 Sum_probs=11.2
Q ss_pred chhcccCCceecCCEEEee
Q 030240 50 LNQWAEKTRFQVGDSLVWK 68 (181)
Q Consensus 50 Y~~WA~~~~f~vGD~LvF~ 68 (181)
|.+|..+++...||++.|+
T Consensus 1 ~p~W~~~~~Y~~Gd~V~~~ 19 (41)
T PF02839_consen 1 YPAWDPGTTYNAGDRVSYN 19 (41)
T ss_dssp --B--TTCEE-TT-EEEET
T ss_pred CCCcCCCCEEcCCCEEEEC
Confidence 5689999999999999754
No 29
>MTH00047 COX2 cytochrome c oxidase subunit II; Provisional
Probab=72.44 E-value=5.4 Score=33.04 Aligned_cols=32 Identities=16% Similarity=0.253 Sum_probs=26.3
Q ss_pred EEEecccccEEEEeCCCCCCcCC---CeEEEEeecCC
Q 030240 102 KVKLNKSGPFYFISGTKGSCEKG---QKLIVVVMSSR 135 (181)
Q Consensus 102 ~v~L~~~G~~YFic~v~~HC~~G---mKl~I~V~~~~ 135 (181)
.++.+++|.|+..|+ ..|..| |++.|.|.++.
T Consensus 159 ~~~~~~~G~y~g~C~--e~CG~~H~~M~~~v~v~~~~ 193 (194)
T MTH00047 159 FFCPDRHGVFVGYCS--ELCGVGHSYMPIVIEVVDVD 193 (194)
T ss_pred EEEcCCCEEEEEEee--hhhCcCcccCcEEEEEEcCC
Confidence 567789999999999 478764 99999998754
No 30
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=70.08 E-value=4 Score=35.10 Aligned_cols=32 Identities=28% Similarity=0.465 Sum_probs=27.0
Q ss_pred EEEecccccEEEEeCCCCCCcCC---CeEEEEeecCC
Q 030240 102 KVKLNKSGPFYFISGTKGSCEKG---QKLIVVVMSSR 135 (181)
Q Consensus 102 ~v~L~~~G~~YFic~v~~HC~~G---mKl~I~V~~~~ 135 (181)
.++.+++|.|+.+|.. .|..| |++.|.|.+.+
T Consensus 180 ~~~~~~~G~Y~g~Cae--~CG~gH~~M~~~v~vvs~~ 214 (247)
T COG1622 180 WLTANKPGTYRGICAE--YCGPGHSFMRFKVIVVSQE 214 (247)
T ss_pred EEecCCCeEEEEEcHh--hcCCCcccceEEEEEEcHH
Confidence 5788999999999994 77764 99999999864
No 31
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=68.17 E-value=11 Score=35.53 Aligned_cols=77 Identities=13% Similarity=0.183 Sum_probs=49.3
Q ss_pred CCceecCCEEEeeeeCCC----CeEEE----EccccC-CC-CC-CCCCcccccCCC---cEEEecccccEEEEeCCCCCC
Q 030240 56 KTRFQVGDSLVWKYDATR----DSVLQ----VTKEAY-LS-CN-TSSPVAEYRDGN---TKVKLNKSGPFYFISGTKGSC 121 (181)
Q Consensus 56 ~~~f~vGD~LvF~y~~~~----HsV~~----V~~~~y-~~-C~-~~~~~~~~s~G~---~~v~L~~~G~~YFic~v~~HC 121 (181)
...++.||.|+++..+.- +++.. +....| |. -. ..-++ ..|. .+|+++.+|+|||-|-...|-
T Consensus 33 ~i~~~~Gd~v~v~v~N~l~~~~t~iHwHGl~~~~~~~~DG~~~vtq~~I---~PG~s~~y~f~~~~~Gt~wyH~H~~~q~ 109 (541)
T TIGR03388 33 TIRAQAGDTIVVELTNKLHTEGVVIHWHGIRQIGTPWADGTAGVTQCAI---NPGETFIYNFVVDRPGTYFYHGHYGMQR 109 (541)
T ss_pred eEEEEcCCEEEEEEEECCCCCCccEEecCcCCcCCcccCCCCccccCCc---CCCCEEEEEEEcCCCEEEEEEecchHHh
Confidence 357889999999887641 23321 111111 11 00 00122 2333 367889999999999999999
Q ss_pred cCCCeEEEEeecCC
Q 030240 122 EKGQKLIVVVMSSR 135 (181)
Q Consensus 122 ~~GmKl~I~V~~~~ 135 (181)
..||...|.|....
T Consensus 110 ~~Gl~G~liV~~~~ 123 (541)
T TIGR03388 110 SAGLYGSLIVDVPD 123 (541)
T ss_pred hccceEEEEEecCC
Confidence 99999999998653
No 32
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=67.86 E-value=57 Score=31.58 Aligned_cols=79 Identities=14% Similarity=0.100 Sum_probs=49.8
Q ss_pred ceecCCEEEeeeeCC----------CCeEEEE--ccccCCC-----CCCCCCcc-----cccCCCc--EEEecccccEEE
Q 030240 58 RFQVGDSLVWKYDAT----------RDSVLQV--TKEAYLS-----CNTSSPVA-----EYRDGNT--KVKLNKSGPFYF 113 (181)
Q Consensus 58 ~f~vGD~LvF~y~~~----------~HsV~~V--~~~~y~~-----C~~~~~~~-----~~s~G~~--~v~L~~~G~~YF 113 (181)
.+.-|+++..-+.+. .|+.+.| ....|+. =|..+|.. ...+|-. +|..|+||..+|
T Consensus 436 ~~~~n~~VeiV~qn~~~~~HP~HLHGh~F~Vvg~G~G~~~~~~~~~~Nl~nPp~RdTv~vp~~gW~aIRF~aDNPG~W~l 515 (596)
T PLN00044 436 NGTYKGFMEIIFQNNATNVQSYHLDGYAFFVVGMDYGLWTDNSRGTYNKWDGVARSTIQVFPGAWTAILVFLDNAGIWNL 515 (596)
T ss_pred EcCCCCEEEEEEeCCCCCCCCeeEcCccEEEEeecCCCCCCCcccccccCCCCccceEEeCCCCeEEEEEecCCCEEehh
Confidence 344577766666532 2466666 3345542 23333431 2234443 678899999999
Q ss_pred EeCCCCCCcCCCeEEEEeecCCC
Q 030240 114 ISGTKGSCEKGQKLIVVVMSSRR 136 (181)
Q Consensus 114 ic~v~~HC~~GmKl~I~V~~~~~ 136 (181)
=|-...|=-.||.+.+.|.+...
T Consensus 516 HCH~~~h~~~Gm~~~~~v~~~~~ 538 (596)
T PLN00044 516 RVENLDAWYLGQEVYINVVNPED 538 (596)
T ss_pred hccCchhhcccCcEEEEEecCCC
Confidence 99988887789999998886653
No 33
>cd06555 ASCH_PF0470_like ASC-1 homology domain, subfamily similar to Pyrococcus furiosus Pf0470. The ASCH domain, a small beta-barrel domain found in all three kingdoms of life, resembles the RNA-binding PUA domain and may also interact with RNA. ASCH has been proposed to function as an RNA-binding domain during coactivation, RNA-processing and the regulation of prokaryotic translation.
Probab=58.20 E-value=10 Score=28.68 Aligned_cols=29 Identities=21% Similarity=0.386 Sum_probs=17.6
Q ss_pred CceecCCEEEeeeeCCCCe-EEEE-ccccCC
Q 030240 57 TRFQVGDSLVWKYDATRDS-VLQV-TKEAYL 85 (181)
Q Consensus 57 ~~f~vGD~LvF~y~~~~Hs-V~~V-~~~~y~ 85 (181)
+.|++||.|+|+=-.+... +++| .-..|+
T Consensus 30 ~~ikvGD~I~f~~~~~~~~l~v~V~~i~~Y~ 60 (109)
T cd06555 30 QQIKVGDKILFNDLDTGQQLLVKVVDIRKYD 60 (109)
T ss_pred hcCCCCCEEEEEEcCCCcEEEEEEEEEEecC
Confidence 5799999999965432222 3444 334444
No 34
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=57.52 E-value=1.8e+02 Score=28.06 Aligned_cols=75 Identities=15% Similarity=0.212 Sum_probs=49.5
Q ss_pred CceecCCEEEeeeeCC--------CCeEEEEccccC-CCCCC-CC-CcccccCCC---cEEEec-ccccEEEEeCCCCCC
Q 030240 57 TRFQVGDSLVWKYDAT--------RDSVLQVTKEAY-LSCNT-SS-PVAEYRDGN---TKVKLN-KSGPFYFISGTKGSC 121 (181)
Q Consensus 57 ~~f~vGD~LvF~y~~~--------~HsV~~V~~~~y-~~C~~-~~-~~~~~s~G~---~~v~L~-~~G~~YFic~v~~HC 121 (181)
.....||+|+.+..+. -|.|.|- +..| |. .. ++ |+ ..|. -+++++ +.|++||.....-|-
T Consensus 61 I~~~~gD~ivV~v~N~~~~~~sihWhGv~q~-kn~w~DG-~~~TqCPI---~Pg~~~tY~F~v~~q~GT~~yh~h~~~~R 135 (563)
T KOG1263|consen 61 INAEEGDTIVVNVVNRLDEPFSIHWHGVRQR-KNPWQDG-VYITQCPI---QPGENFTYRFTVKDQIGTLWYHSHVSWQR 135 (563)
T ss_pred EEEEeCCEEEEEEEeCCCCceEEEecccccc-CCccccC-CccccCCc---CCCCeEEEEEEeCCcceeEEEeecccccc
Confidence 5688999999888643 2333332 1222 11 00 00 22 2333 267777 889999999999999
Q ss_pred cCCCeEEEEeecCCC
Q 030240 122 EKGQKLIVVVMSSRR 136 (181)
Q Consensus 122 ~~GmKl~I~V~~~~~ 136 (181)
..|+...+.|.....
T Consensus 136 a~G~~G~liI~~~~~ 150 (563)
T KOG1263|consen 136 ATGVFGALIINPRPG 150 (563)
T ss_pred ccCceeEEEEcCCcc
Confidence 999999999988664
No 35
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=56.75 E-value=27 Score=33.59 Aligned_cols=73 Identities=16% Similarity=0.185 Sum_probs=47.2
Q ss_pred CCceecCCEEEeeeeCC---CCeE------EEEcccc--CCCCCCCCCcccccCCC---cEEEecccccEEEEeCCCCCC
Q 030240 56 KTRFQVGDSLVWKYDAT---RDSV------LQVTKEA--YLSCNTSSPVAEYRDGN---TKVKLNKSGPFYFISGTKGSC 121 (181)
Q Consensus 56 ~~~f~vGD~LvF~y~~~---~HsV------~~V~~~~--y~~C~~~~~~~~~s~G~---~~v~L~~~G~~YFic~v~~HC 121 (181)
...++.||.+++.+.+. .|.+ +++...+ |.. ..+.+ ....|. ..|..+++|+++|=|-+..|=
T Consensus 500 pl~v~~Gervri~l~N~t~~~HpmHlHG~~f~v~~~~G~~~~--~~dTv-~V~Pg~t~~~~f~ad~pG~w~~HCH~l~H~ 576 (587)
T TIGR01480 500 PLRFNYGERLRVVLVNDTMMAHPIHLHGMWSELEDGQGEFQV--RKHTV-DVPPGGKRSFRVTADALGRWAYHCHMLLHM 576 (587)
T ss_pred ceEecCCCEEEEEEECCCCCCcceeEcCceeeeecCCCcccc--cCCce-eeCCCCEEEEEEECCCCeEEEEcCCCHHHH
Confidence 56799999999999864 3444 2331111 110 00111 123333 256788999999999999999
Q ss_pred cCCCeEEEEe
Q 030240 122 EKGQKLIVVV 131 (181)
Q Consensus 122 ~~GmKl~I~V 131 (181)
+.||--.+.|
T Consensus 577 ~~GM~~~~~v 586 (587)
T TIGR01480 577 EAGMFREVTV 586 (587)
T ss_pred hCcCcEEEEe
Confidence 9999777766
No 36
>PLN02792 oxidoreductase
Probab=53.60 E-value=95 Score=29.57 Aligned_cols=79 Identities=18% Similarity=0.141 Sum_probs=51.8
Q ss_pred ceecCCEEEeeeeCC----------CCeEEEE--ccccCCC-----CCCCCCcc-----cccCCCc--EEEecccccEEE
Q 030240 58 RFQVGDSLVWKYDAT----------RDSVLQV--TKEAYLS-----CNTSSPVA-----EYRDGNT--KVKLNKSGPFYF 113 (181)
Q Consensus 58 ~f~vGD~LvF~y~~~----------~HsV~~V--~~~~y~~-----C~~~~~~~-----~~s~G~~--~v~L~~~G~~YF 113 (181)
.+.-|+++..-+.+. .|+.+.| ....|+. =|..+|.. ....|-. +|..+.||..+|
T Consensus 406 ~~~~~~~VeiViqn~~~~~HP~HLHGh~F~Vvg~G~G~~~~~~~~~~Nl~nP~~RdTv~v~~~gw~aIRf~aDNPGvW~~ 485 (536)
T PLN02792 406 GAHHNAFLEIIFQNREKIVQSYHLDGYNFWVVGINKGIWSRASRREYNLKDAISRSTTQVYPESWTAVYVALDNVGMWNL 485 (536)
T ss_pred EcCCCCEEEEEEECCCCCCCCeeeCCCceEEEeecCCCCCcccccccCcCCCCccceEEECCCCEEEEEEEeeCCEEEee
Confidence 355677776666542 3466666 3345542 23344432 1233433 678899999999
Q ss_pred EeCCCCCCcCCCeEEEEeecCCC
Q 030240 114 ISGTKGSCEKGQKLIVVVMSSRR 136 (181)
Q Consensus 114 ic~v~~HC~~GmKl~I~V~~~~~ 136 (181)
=|-...|=..||.+.+.|.....
T Consensus 486 HCh~~~h~~~Gm~~~~~v~~~~~ 508 (536)
T PLN02792 486 RSQFWARQYLGQQFYLRVYSPTH 508 (536)
T ss_pred eEcchhccccceEEEEEEccCCC
Confidence 99988999999999999986554
No 37
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=53.54 E-value=11 Score=27.91 Aligned_cols=8 Identities=38% Similarity=0.185 Sum_probs=4.1
Q ss_pred CcchhhHH
Q 030240 1 MAGFSRTL 8 (181)
Q Consensus 1 m~~~~~~~ 8 (181)
|||-.++|
T Consensus 1 MaSK~~ll 8 (95)
T PF07172_consen 1 MASKAFLL 8 (95)
T ss_pred CchhHHHH
Confidence 78444333
No 38
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=53.50 E-value=31 Score=33.36 Aligned_cols=79 Identities=11% Similarity=0.082 Sum_probs=48.4
Q ss_pred CceecCCEEEeeeeCC--------CCeEEEEccccCCC-CCCCCCcccccCCCcEEEe-cccccEEEEeCCCCCCcCCCe
Q 030240 57 TRFQVGDSLVWKYDAT--------RDSVLQVTKEAYLS-CNTSSPVAEYRDGNTKVKL-NKSGPFYFISGTKGSCEKGQK 126 (181)
Q Consensus 57 ~~f~vGD~LvF~y~~~--------~HsV~~V~~~~y~~-C~~~~~~~~~s~G~~~v~L-~~~G~~YFic~v~~HC~~GmK 126 (181)
..++.||+|+.+..+. -|-+.|......|. .-..-|+....+=..+|++ ++.|+|||=+-...+-..|+.
T Consensus 62 I~~~~GD~v~V~V~N~L~~~ttIHWHGl~q~~t~w~DGv~~TQcPI~PG~sftY~F~~~dq~GT~WYHsH~~~Q~~~Gl~ 141 (596)
T PLN00044 62 LNVTTNWNLVVNVRNALDEPLLLTWHGVQQRKSAWQDGVGGTNCAIPAGWNWTYQFQVKDQVGSFFYAPSTALHRAAGGY 141 (596)
T ss_pred EEEECCCEEEEEEEeCCCCCccEEECCccCCCCccccCCCCCcCCcCCCCcEEEEEEeCCCCceeEeeccchhhhhCcCe
Confidence 4688999999988653 23343321111121 0001133221221236777 479999999998888889999
Q ss_pred EEEEeecCC
Q 030240 127 LIVVVMSSR 135 (181)
Q Consensus 127 l~I~V~~~~ 135 (181)
..|.|....
T Consensus 142 GalII~~~~ 150 (596)
T PLN00044 142 GAITINNRD 150 (596)
T ss_pred eEEEEcCcc
Confidence 999998654
No 39
>PF05382 Amidase_5: Bacteriophage peptidoglycan hydrolase ; InterPro: IPR008044 This entry is represented by Bacteriophage SFi21, lysin (Cell wall hydrolase; 3.5.1.28 from EC). At least one of proteins in this entry, the Pal protein from the pneumococcal bacteriophage Dp-1 (O03979 from SWISSPROT) has been shown to be an N-acetylmuramoyl-L-alanine amidase []. According to the known modular structure of this and other peptidoglycan hydrolases from the pneumococcal system, the active site should reside within this domain while a C-terminal domain binds to the choline residues of the cell wall teichoic acids [, ].
Probab=51.58 E-value=38 Score=26.84 Aligned_cols=35 Identities=20% Similarity=0.446 Sum_probs=27.4
Q ss_pred CceecCCEEEeeee-----CCCCeEEEEccccCCCCCCCC
Q 030240 57 TRFQVGDSLVWKYD-----ATRDSVLQVTKEAYLSCNTSS 91 (181)
Q Consensus 57 ~~f~vGD~LvF~y~-----~~~HsV~~V~~~~y~~C~~~~ 91 (181)
...+.||++++.-. ...|+.+-++....-+|+...
T Consensus 74 ~~~q~GDI~I~g~~g~S~G~~GHtgif~~~~~iIhc~y~~ 113 (145)
T PF05382_consen 74 WNLQRGDIFIWGRRGNSAGAGGHTGIFMDNDTIIHCNYGA 113 (145)
T ss_pred ccccCCCEEEEcCCCCCCCCCCeEEEEeCCCcEEEecCCC
Confidence 46899999998664 246999888888888899844
No 40
>MTH00140 COX2 cytochrome c oxidase subunit II; Provisional
Probab=49.15 E-value=24 Score=29.69 Aligned_cols=31 Identities=16% Similarity=0.330 Sum_probs=25.2
Q ss_pred EEEecccccEEEEeCCCCCCcCC---CeEEEEeecC
Q 030240 102 KVKLNKSGPFYFISGTKGSCEKG---QKLIVVVMSS 134 (181)
Q Consensus 102 ~v~L~~~G~~YFic~v~~HC~~G---mKl~I~V~~~ 134 (181)
.++.+++|.||..|+. -|..| |++.|.|.+.
T Consensus 183 ~~~~~~~g~y~~~C~e--~CG~~H~~M~~~v~v~~~ 216 (228)
T MTH00140 183 SFEPKRPGVFYGQCSE--ICGANHSFMPIVVEAVPL 216 (228)
T ss_pred EEEeCCCEEEEEECcc--ccCcCcCCCeEEEEEECH
Confidence 5677899999999995 78765 8998888763
No 41
>PLN02191 L-ascorbate oxidase
Probab=49.06 E-value=41 Score=32.16 Aligned_cols=75 Identities=13% Similarity=0.113 Sum_probs=46.8
Q ss_pred CceecCCEEEeeeeCC----CCeE-----EEEccccCCC-CCCC-CCcccccCCC---cEEEecccccEEEEeCCCCCCc
Q 030240 57 TRFQVGDSLVWKYDAT----RDSV-----LQVTKEAYLS-CNTS-SPVAEYRDGN---TKVKLNKSGPFYFISGTKGSCE 122 (181)
Q Consensus 57 ~~f~vGD~LvF~y~~~----~HsV-----~~V~~~~y~~-C~~~-~~~~~~s~G~---~~v~L~~~G~~YFic~v~~HC~ 122 (181)
..++.||+|+.+..+. .+++ .+....-+|. -..+ -++ ..|. .+|+++++|+|||=|-...+-.
T Consensus 56 i~~~~Gd~v~v~v~N~l~~~~tsiHwHGl~~~~~~~~DGv~gvtq~pI---~PG~s~~Y~f~~~~~GT~wYHsH~~~q~~ 132 (574)
T PLN02191 56 IDAVAGDTIVVHLTNKLTTEGLVIHWHGIRQKGSPWADGAAGVTQCAI---NPGETFTYKFTVEKPGTHFYHGHYGMQRS 132 (574)
T ss_pred EEEEcCCEEEEEEEECCCCCCccEECCCCCCCCCccccCCCccccCCc---CCCCeEEEEEECCCCeEEEEeeCcHHHHh
Confidence 5688999999988753 1222 2211100111 0000 122 2333 3678889999999999988889
Q ss_pred CCCeEEEEeecC
Q 030240 123 KGQKLIVVVMSS 134 (181)
Q Consensus 123 ~GmKl~I~V~~~ 134 (181)
.||.-.|.|...
T Consensus 133 ~Gl~G~liV~~~ 144 (574)
T PLN02191 133 AGLYGSLIVDVA 144 (574)
T ss_pred CCCEEEEEEccC
Confidence 999999999743
No 42
>PLN02835 oxidoreductase
Probab=47.63 E-value=1.9e+02 Score=27.49 Aligned_cols=128 Identities=13% Similarity=0.014 Sum_probs=0.0
Q ss_pred chhhHHHHHHHHHHHHHHHhhhcccceEEEEeCCCCCccCCCCCCccchh--cccC-------CceecCCEEEeeeeCC-
Q 030240 3 GFSRTLASSSLVLTSLVLFSISFCEARDILVGGKTDSWKIPSSQSDSLNQ--WAEK-------TRFQVGDSLVWKYDAT- 72 (181)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~ll~~~a~a~~~~VGg~~G~W~~~~~~~~~Y~~--WA~~-------~~f~vGD~LvF~y~~~- 72 (181)
..+.+|..=+|-+++.+.+....+.-++|..-=..+ +..+.. +.. |.=+ ..++.||+|+.+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~v~~~-~~~~dg----~~~~~~~~NG~~PGP~I~~~~GD~v~v~v~N~L 78 (539)
T PLN02835 4 AVNLHLLLGVLAVLSSVSLVNGEDPYKYYTWTVTYG-TISPLG----VPQQVILINGQFPGPRLDVVTNDNIILNLINKL 78 (539)
T ss_pred HHHHHHHHHHHHHHHHHhhhhccCcEEEEEEEEEEE-EeccCC----eEEEEEEECCcCCCCCEEEECCCEEEEEEEeCC
Q ss_pred -------CCeEEEEccccCCC-CCCCCCcccccCCCcEEEe-cccccEEEEeCCCCCCcCCCeEEEEeecCC
Q 030240 73 -------RDSVLQVTKEAYLS-CNTSSPVAEYRDGNTKVKL-NKSGPFYFISGTKGSCEKGQKLIVVVMSSR 135 (181)
Q Consensus 73 -------~HsV~~V~~~~y~~-C~~~~~~~~~s~G~~~v~L-~~~G~~YFic~v~~HC~~GmKl~I~V~~~~ 135 (181)
-|-+.+......|. ....-++....+=..+|++ +++|+|||=|-...+-..|+.-.+.|....
T Consensus 79 ~~~ttiHWHGl~~~~~~~~DGv~~tQ~pI~PG~sf~Y~F~~~~q~GT~WYHsH~~~q~~~Gl~G~lIV~~~~ 150 (539)
T PLN02835 79 DQPFLLTWNGIKQRKNSWQDGVLGTNCPIPPNSNYTYKFQTKDQIGTFTYFPSTLFHKAAGGFGAINVYERP 150 (539)
T ss_pred CCCCcEEeCCcccCCCCCCCCCccCcCCCCCCCcEEEEEEECCCCEeEEEEeCccchhcCcccceeEEeCCC
No 43
>TIGR02228 sigpep_I_arch signal peptidase I, archaeal type. This model represents signal peptidase I from most archaea, a subunit of the eukaryotic endoplasmic reticulum signal peptidase I complex, and an apparent signal peptidase I from a small number of bacteria. It is related to but does not overlap in hits with TIGR02227, the bacterial and mitochondrial signal peptidase I.
Probab=46.37 E-value=84 Score=24.98 Aligned_cols=17 Identities=29% Similarity=0.448 Sum_probs=13.5
Q ss_pred CCceecCCEEEeeeeCC
Q 030240 56 KTRFQVGDSLVWKYDAT 72 (181)
Q Consensus 56 ~~~f~vGD~LvF~y~~~ 72 (181)
...++.||.++|+.+.+
T Consensus 58 ~~~~~~GDIVvf~~~~~ 74 (158)
T TIGR02228 58 PNDIQVGDVITYKSPGF 74 (158)
T ss_pred cCCCCCCCEEEEEECCC
Confidence 35789999999998653
No 44
>PF12961 DUF3850: Domain of Unknown Function with PDB structure (DUF3850)
Probab=46.12 E-value=14 Score=26.19 Aligned_cols=13 Identities=54% Similarity=0.820 Sum_probs=11.2
Q ss_pred CCceecCCEEEee
Q 030240 56 KTRFQVGDSLVWK 68 (181)
Q Consensus 56 ~~~f~vGD~LvF~ 68 (181)
++.|+|||.|+++
T Consensus 26 DRdf~VGD~L~L~ 38 (72)
T PF12961_consen 26 DRDFQVGDILVLR 38 (72)
T ss_pred CCCCCCCCEEEEE
Confidence 6789999999875
No 45
>PF09451 ATG27: Autophagy-related protein 27; InterPro: IPR018939 Autophagy is a degradative transport pathway that delivers cytosolic proteins to the lysosome (vacuole) [] and is induced by starvation []. Cytosolic proteins appear inside the vacuole enclosed in autophagic vesicles. Autophagy significantly differs from other transport pathways by using double membrane layered transport intermediates, called autophagosomes [, ]. The breakdown of vesicular transport intermediates is a unique feature of autophagy []. Autophagy can also function in the elimination of invading bacteria and antigens []. There are more than 25 AuTophaGy-related (ATG) genes that are essential for autophagy, although it is still not known how the autophagosome is made. Atg9 is a potential membrane carrier to deliver lipids that are used to form the vesicle. Atg27 is another transmembrane protein, and is a cycling protein []. It acts as an effector of VPS34 phosphatidylinositol 3-phosphate kinase signalling and regulates the cytoplasm to vacuole transport (Cvt) vesicle formation. It is also required for autophagy-dependent cycling of ATG9.
Probab=45.82 E-value=19 Score=30.86 Aligned_cols=31 Identities=10% Similarity=0.159 Sum_probs=24.8
Q ss_pred HHhhhcccceEEEEeCCCCCccCCCCCCccchhccc
Q 030240 20 LFSISFCEARDILVGGKTDSWKIPSSQSDSLNQWAE 55 (181)
Q Consensus 20 ~ll~~~a~a~~~~VGg~~G~W~~~~~~~~~Y~~WA~ 55 (181)
++-+...+..+|..++..| |.+-|+ +.-|.+
T Consensus 215 ~~Y~i~g~~~n~~~~g~~g-~e~iP~----~dfw~~ 245 (268)
T PF09451_consen 215 AAYLIFGSWYNYNRYGARG-FELIPH----FDFWRS 245 (268)
T ss_pred HHHhhhhhheeeccCCCCC-ceeccc----HhHHHh
Confidence 3455567888999999999 999888 777865
No 46
>PF02362 B3: B3 DNA binding domain; InterPro: IPR003340 Two DNA binding proteins, RAV1 and RAV2 from Arabidopsis thaliana contain two distinct amino acid sequence domains found only in higher plant species. The N-terminal regions of RAV1 and RAV2 are homologous to the AP2 DNA-binding domain (see IPR001471 from INTERPRO) present in a family of transcription factors, while the C-terminal region exhibits homology to the highly conserved C-terminal domain, designated B3, of VP1/ABI3 transcription factors []. The AP2 and B3-like domains of RAV1 bind autonomously to the CAACA and CACCTG motifs, respectively, and together achieve a high affinity and specificity of binding. It has been suggested that the AP2 and B3-like domains of RAV1 are connected by a highly flexible structure enabling the two domains to bind to the CAACA and CACCTG motifs in various spacings and orientations [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1WID_A 1YEL_A.
Probab=42.05 E-value=20 Score=25.12 Aligned_cols=19 Identities=16% Similarity=0.288 Sum_probs=12.3
Q ss_pred ccCCceecCCEEEeeeeCC
Q 030240 54 AEKTRFQVGDSLVWKYDAT 72 (181)
Q Consensus 54 A~~~~f~vGD~LvF~y~~~ 72 (181)
+..+.+++||.++|++...
T Consensus 69 v~~n~L~~GD~~~F~~~~~ 87 (100)
T PF02362_consen 69 VRDNGLKEGDVCVFELIGN 87 (100)
T ss_dssp HHHCT--TT-EEEEEE-SS
T ss_pred HHHcCCCCCCEEEEEEecC
Confidence 3668899999999999853
No 47
>MTH00154 COX2 cytochrome c oxidase subunit II; Provisional
Probab=41.75 E-value=37 Score=28.62 Aligned_cols=31 Identities=16% Similarity=0.371 Sum_probs=24.5
Q ss_pred EEEecccccEEEEeCCCCCCcCC---CeEEEEeecC
Q 030240 102 KVKLNKSGPFYFISGTKGSCEKG---QKLIVVVMSS 134 (181)
Q Consensus 102 ~v~L~~~G~~YFic~v~~HC~~G---mKl~I~V~~~ 134 (181)
.++.+++|.||..|+. -|..| |++.|.|.+.
T Consensus 183 ~~~~~~~G~y~g~Cse--~CG~~H~~M~~~v~vv~~ 216 (227)
T MTH00154 183 NFLINRPGLFFGQCSE--ICGANHSFMPIVIESVSV 216 (227)
T ss_pred EEEEcCceEEEEEeec--hhCcCccCCeEEEEEeCH
Confidence 5678899999999994 67655 8888887653
No 48
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=41.25 E-value=47 Score=24.61 Aligned_cols=32 Identities=19% Similarity=0.373 Sum_probs=27.5
Q ss_pred EEEecccccEEEEeCCCCCCcCCCeEEEEeec
Q 030240 102 KVKLNKSGPFYFISGTKGSCEKGQKLIVVVMS 133 (181)
Q Consensus 102 ~v~L~~~G~~YFic~v~~HC~~GmKl~I~V~~ 133 (181)
++..+.+|.+.|=|-+-.|=..||-..+.|..
T Consensus 105 ~~~~~~~G~w~~HCHi~~H~~~GM~~~~~v~~ 136 (138)
T PF07731_consen 105 RFRADNPGPWLFHCHILEHEDNGMMAVFVVGP 136 (138)
T ss_dssp EEEETSTEEEEEEESSHHHHHTT-EEEEEECH
T ss_pred EEEeecceEEEEEEchHHHHhCCCeEEEEEcC
Confidence 56778999999999999999999999998864
No 49
>PF05283 MGC-24: Multi-glycosylated core protein 24 (MGC-24); InterPro: IPR007947 CD164 is a mucin-like receptor, or sialomucin, with specificity in receptor/ ligand interactions that depends on the structural characteristics of the mucin-like receptor. Its functions include mediating, or regulating, haematopoietic progenitor cell adhesion and the negative regulation of their growth and/or-differentiation. It exists in the native state as a disulphide- linked homodimer of two 80-85kDa subunits. It is usually expressed by CD34+ and CD341o/- haematopoietic stem cells and associated microenvironmental cells. It contains, in its extracellular region, two mucin domains (I and II) linked by a non-mucin domain, which has been predicted to contain intra- disulphide bridges. This receptor may play a key role in haematopoiesis by facilitating the adhesion of human CD34+ cells to bone marrow stroma and by negatively regulating CD34+ CD341o/- haematopoietic progenitor cell proliferation. These effects involve the CD164 class I and/or II epitopes recognised by the monoclonal antibodies (mAbs) 105A5 and 103B2/9E10. These epitopes are carbohydrate-dependent and are located on the N-terminal mucin domain I [, ]. It has been found that murine MGC-24v and rat endolyn share significant sequence similarities with human CD164. However, CD164 lacks the consensus glycosaminoglycan (GAG)-attachment site found in MGC-24; it is possible that GAG-association is responsible for the high molecular weight of the epithelial-derived MGC-24 glycoprotein []. Genomic structure studies have placed CD164 within the mucin-subgroup that comprises multiple exons, and demonstrate the diverse chromosomal distribution of this family of molecules. Molecules with such multiple exons may have sophisticated regulatory mechanisms that involve not only post-translational modifications of the oligosaccharide side chains, but also differential exon usage. Although differences in the intron and exon sizes are seen between the mouse and human genes, the predicted proteins are similar in size and structure, maintaining functionally important motifs that regulate cell proliferation or subcellular distribution []. CD164 is a gene whose expression depends on differential usage of poly- adenylation sites within the 3'-UTR. The conserved distribution of the 3.2- and 1.2-kb CD164 transcripts between mouse and human suggests that (i) a mechanism may exist to regulate tissue-specific polyadenylation, and (ii) differences in polyadenylation are important for the expression and function of CD164 in different tissues. Two other aspects of the structure of CD164 are of particular interest. First, it shares one of several conserved features of a cytokine-binding pocket - in this respect, it is notable that evidence exists for a class of cell-surface sialomucin modulators that directly interact with growth factor receptors to regulate their response to physiological ligands. Second, its cytoplasmic tail contains a C-terminal YHTL motif found in many endocytic membrane proteins or receptors. These Tyr-based motifs bind to adaptor proteins, which mediate the sorting of membrane proteins into transport vesicles from the plasma membrane to the endosomes, and between intracellular compartments.
Probab=40.63 E-value=59 Score=26.96 Aligned_cols=20 Identities=15% Similarity=0.240 Sum_probs=14.5
Q ss_pred cccccEEEEeCCCCCCcCCC
Q 030240 106 NKSGPFYFISGTKGSCEKGQ 125 (181)
Q Consensus 106 ~~~G~~YFic~v~~HC~~Gm 125 (181)
+..+-.|..|.-.+||-+.-
T Consensus 71 n~s~C~W~~C~~~~~Cv~~s 90 (186)
T PF05283_consen 71 NNSTCVWMECKGESYCVNNS 90 (186)
T ss_pred ccCceEeeecCCCCcccCCc
Confidence 45677888888778888643
No 50
>MTH00168 COX2 cytochrome c oxidase subunit II; Provisional
Probab=39.41 E-value=40 Score=28.31 Aligned_cols=31 Identities=16% Similarity=0.304 Sum_probs=24.5
Q ss_pred EEEecccccEEEEeCCCCCCcCC---CeEEEEeecC
Q 030240 102 KVKLNKSGPFYFISGTKGSCEKG---QKLIVVVMSS 134 (181)
Q Consensus 102 ~v~L~~~G~~YFic~v~~HC~~G---mKl~I~V~~~ 134 (181)
.++.+++|.||..|+. -|..| |++.|.|.+.
T Consensus 183 ~~~~~~~G~~~g~CsE--~CG~~Hs~M~~~v~vv~~ 216 (225)
T MTH00168 183 AFLSSRPGSFYGQCSE--ICGANHSFMPIVVEFVPW 216 (225)
T ss_pred EEEcCCCEEEEEEccc--ccCcCcCCCeEEEEEeCH
Confidence 5677899999999994 67765 8888887653
No 51
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=39.22 E-value=71 Score=30.81 Aligned_cols=77 Identities=14% Similarity=0.157 Sum_probs=45.0
Q ss_pred CceecCCEEEeeeeCC---CCeEE----EEccccCCC-CCCC-CCcccccCCCcEEEecccccEEEEeCCCCCCcCCCeE
Q 030240 57 TRFQVGDSLVWKYDAT---RDSVL----QVTKEAYLS-CNTS-SPVAEYRDGNTKVKLNKSGPFYFISGTKGSCEKGQKL 127 (181)
Q Consensus 57 ~~f~vGD~LvF~y~~~---~HsV~----~V~~~~y~~-C~~~-~~~~~~s~G~~~v~L~~~G~~YFic~v~~HC~~GmKl 127 (181)
..++.||.++.++.+. .+++. .+.. ..|. ...+ .++....+-..+|++..+|+|||=|-...+=+.|+.-
T Consensus 78 ir~~~Gd~v~v~v~N~l~~~tsiHwHGl~~~~-~~DGvP~vt~~~I~PG~s~~Y~f~~~~~GTyWYHsH~~~q~~~GL~G 156 (587)
T TIGR01480 78 LRWREGDTVRLRVTNTLPEDTSIHWHGILLPF-QMDGVPGVSFAGIAPGETFTYRFPVRQSGTYWYHSHSGFQEQAGLYG 156 (587)
T ss_pred EEEECCCEEEEEEEcCCCCCceEEcCCCcCCc-cccCCCcccccccCCCCeEEEEEECCCCeeEEEecCchhHhhccceE
Confidence 5688999999999764 22221 1110 0110 1111 1121111112367788999999999877777789988
Q ss_pred EEEeecC
Q 030240 128 IVVVMSS 134 (181)
Q Consensus 128 ~I~V~~~ 134 (181)
.|.|...
T Consensus 157 ~lIV~~~ 163 (587)
T TIGR01480 157 PLIIDPA 163 (587)
T ss_pred EEEECCC
Confidence 8888653
No 52
>PTZ00047 cytochrome c oxidase subunit II; Provisional
Probab=38.58 E-value=44 Score=27.15 Aligned_cols=30 Identities=20% Similarity=0.301 Sum_probs=22.9
Q ss_pred EEEecccccEEEEeCCCCCCcC---CCeEEEEeec
Q 030240 102 KVKLNKSGPFYFISGTKGSCEK---GQKLIVVVMS 133 (181)
Q Consensus 102 ~v~L~~~G~~YFic~v~~HC~~---GmKl~I~V~~ 133 (181)
.+..+++|.||..|+. -|.. .|.+.|.|.+
T Consensus 116 ~~~~~~~G~y~gqCsE--lCG~gHs~M~~~V~vvs 148 (162)
T PTZ00047 116 NTFILREGVFYGQCSE--MCGTLHGFMPIVVEAVS 148 (162)
T ss_pred EEecCCCeEEEEEcch--hcCcCccCceEEEEEeC
Confidence 4567889999999994 5664 4888888765
No 53
>PLN02792 oxidoreductase
Probab=38.22 E-value=1.2e+02 Score=28.96 Aligned_cols=78 Identities=13% Similarity=0.160 Sum_probs=46.1
Q ss_pred CceecCCEEEeeeeCC--------CCeEEEEccccCCC-CCCCCCcccccCCCcEEEe-cccccEEEEeCCCCCCcCCCe
Q 030240 57 TRFQVGDSLVWKYDAT--------RDSVLQVTKEAYLS-CNTSSPVAEYRDGNTKVKL-NKSGPFYFISGTKGSCEKGQK 126 (181)
Q Consensus 57 ~~f~vGD~LvF~y~~~--------~HsV~~V~~~~y~~-C~~~~~~~~~s~G~~~v~L-~~~G~~YFic~v~~HC~~GmK 126 (181)
..++.||+|+.+..+. -|.+.+......|. --..-|+....+=..+|++ +++|+|||=+-...+-..|+.
T Consensus 49 I~~~~GD~v~V~v~N~L~~~ttiHWHGl~q~~~~~~DGv~~tqcPI~PG~sftY~F~~~~q~GT~WYHsH~~~q~~~Gl~ 128 (536)
T PLN02792 49 IRSLTNDNLVINVHNDLDEPFLLSWNGVHMRKNSYQDGVYGTTCPIPPGKNYTYDFQVKDQVGSYFYFPSLAVQKAAGGY 128 (536)
T ss_pred EEEECCCEEEEEEEeCCCCCcCEeCCCcccCCCCccCCCCCCcCccCCCCcEEEEEEeCCCccceEEecCcchhhhcccc
Confidence 5688999999999764 23444431111111 0001133221221236777 479999999988777778888
Q ss_pred EEEEeecC
Q 030240 127 LIVVVMSS 134 (181)
Q Consensus 127 l~I~V~~~ 134 (181)
..+.|...
T Consensus 129 G~liI~~~ 136 (536)
T PLN02792 129 GSLRIYSL 136 (536)
T ss_pred cceEEeCC
Confidence 77776653
No 54
>MTH00117 COX2 cytochrome c oxidase subunit II; Provisional
Probab=37.98 E-value=45 Score=28.07 Aligned_cols=31 Identities=16% Similarity=0.291 Sum_probs=24.3
Q ss_pred EEEecccccEEEEeCCCCCCcCC---CeEEEEeecC
Q 030240 102 KVKLNKSGPFYFISGTKGSCEKG---QKLIVVVMSS 134 (181)
Q Consensus 102 ~v~L~~~G~~YFic~v~~HC~~G---mKl~I~V~~~ 134 (181)
.++.+++|.||-.|+. -|..| |.+.|.|.+.
T Consensus 183 ~~~~~~~G~y~g~CsE--~CG~~Hs~M~~~v~vv~~ 216 (227)
T MTH00117 183 SFITTRPGVFYGQCSE--ICGANHSFMPIVVESVPL 216 (227)
T ss_pred EEEEcccceEEEEecc--ccccCccCCeEEEEEcCH
Confidence 5678899999999995 67654 8888887653
No 55
>MTH00139 COX2 cytochrome c oxidase subunit II; Provisional
Probab=37.78 E-value=42 Score=28.16 Aligned_cols=31 Identities=23% Similarity=0.412 Sum_probs=24.7
Q ss_pred EEEecccccEEEEeCCCCCCcCC---CeEEEEeecC
Q 030240 102 KVKLNKSGPFYFISGTKGSCEKG---QKLIVVVMSS 134 (181)
Q Consensus 102 ~v~L~~~G~~YFic~v~~HC~~G---mKl~I~V~~~ 134 (181)
.++.+++|.||..|+. -|..| |++.|.|.+.
T Consensus 183 ~~~~~~~G~y~g~CsE--~CG~~Hs~M~~~v~vv~~ 216 (226)
T MTH00139 183 GFFINRPGVFYGQCSE--ICGANHSFMPIVVEAISP 216 (226)
T ss_pred EEEcCCCEEEEEEChh--hcCcCcCCCeEEEEEeCH
Confidence 5678899999999994 67765 8888887653
No 56
>MTH00129 COX2 cytochrome c oxidase subunit II; Provisional
Probab=37.30 E-value=41 Score=28.42 Aligned_cols=31 Identities=16% Similarity=0.242 Sum_probs=24.0
Q ss_pred EEEecccccEEEEeCCCCCCcC---CCeEEEEeecC
Q 030240 102 KVKLNKSGPFYFISGTKGSCEK---GQKLIVVVMSS 134 (181)
Q Consensus 102 ~v~L~~~G~~YFic~v~~HC~~---GmKl~I~V~~~ 134 (181)
.++.+++|.||..|+. -|.. .|++.|.|.+.
T Consensus 183 ~~~~~~~G~~~g~C~e--~CG~~H~~M~~~v~vv~~ 216 (230)
T MTH00129 183 AFIASRPGVFYGQCSE--ICGANHSFMPIVVEAVPL 216 (230)
T ss_pred EEEeCCceEEEEEChh--hccccccCCcEEEEEECH
Confidence 4567899999999995 6665 48888887653
No 57
>smart00495 ChtBD3 Chitin-binding domain type 3.
Probab=37.08 E-value=24 Score=21.32 Aligned_cols=18 Identities=22% Similarity=0.584 Sum_probs=13.4
Q ss_pred chhcccCCceecCCEEEe
Q 030240 50 LNQWAEKTRFQVGDSLVW 67 (181)
Q Consensus 50 Y~~WA~~~~f~vGD~LvF 67 (181)
|..|..++.-..||.+.+
T Consensus 1 ~~~W~~~~~Y~~Gd~V~~ 18 (41)
T smart00495 1 APAWQAGTVYTAGDVVSY 18 (41)
T ss_pred CCccCCCCcCcCCCEEEE
Confidence 457877777778998865
No 58
>MTH00098 COX2 cytochrome c oxidase subunit II; Validated
Probab=36.73 E-value=46 Score=28.11 Aligned_cols=31 Identities=10% Similarity=0.300 Sum_probs=24.0
Q ss_pred EEEecccccEEEEeCCCCCCcCC---CeEEEEeecC
Q 030240 102 KVKLNKSGPFYFISGTKGSCEKG---QKLIVVVMSS 134 (181)
Q Consensus 102 ~v~L~~~G~~YFic~v~~HC~~G---mKl~I~V~~~ 134 (181)
.++.+++|.||..|+. -|..| |.+.|.|.+.
T Consensus 183 ~~~~~~~G~~~g~Cse--~CG~~H~~M~~~v~v~~~ 216 (227)
T MTH00098 183 TLMSTRPGLYYGQCSE--ICGSNHSFMPIVLELVPL 216 (227)
T ss_pred EEecCCcEEEEEECcc--ccCcCcCCceEEEEEeCH
Confidence 5677899999999995 66654 8888877653
No 59
>TIGR01433 CyoA cytochrome o ubiquinol oxidase subunit II. This enzyme catalyzes the oxidation of ubiquinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. Subunit II is responsible for binding and oxidation of the ubiquinone substrate. This sequence is closely related to QoxA, which oxidizes quinol in gram positive bacteria but which is in complex with subunits which utilize cytochromes a in the reduction of molecular oxygen. Slightly more distantly related is subunit II of cytochrome c oxidase which uses cyt. c as the oxidant.
Probab=36.16 E-value=49 Score=27.92 Aligned_cols=31 Identities=19% Similarity=0.239 Sum_probs=24.9
Q ss_pred EEEecccccEEEEeCCCCCCcCC---CeEEEEeecC
Q 030240 102 KVKLNKSGPFYFISGTKGSCEKG---QKLIVVVMSS 134 (181)
Q Consensus 102 ~v~L~~~G~~YFic~v~~HC~~G---mKl~I~V~~~ 134 (181)
.++.+++|.|+-.|.. .|-.| |++.|.|.+.
T Consensus 182 ~~~~~~~G~y~g~CaE--~CG~~Ha~M~~~V~v~~~ 215 (226)
T TIGR01433 182 HLIANEPGVYDGISAN--YSGPGFSGMKFKAIATDR 215 (226)
T ss_pred EEEeCCCEEEEEEchh--hcCcCccCCeEEEEEECH
Confidence 5678999999999994 67654 8988888653
No 60
>PF02157 Man-6-P_recep: Mannose-6-phosphate receptor; PDB: 2RLB_A 3K42_A 2RL9_A 3K43_A 1C39_A 1M6P_A 3CY4_A 1KEO_B 2RL7_D 2RL8_B ....
Probab=35.98 E-value=12 Score=32.90 Aligned_cols=40 Identities=15% Similarity=0.225 Sum_probs=0.0
Q ss_pred ccceEEEEeCCCCCccCCCCCCccchhcccCCceecCCEEEeeeeC
Q 030240 26 CEARDILVGGKTDSWKIPSSQSDSLNQWAEKTRFQVGDSLVWKYDA 71 (181)
Q Consensus 26 a~a~~~~VGg~~G~W~~~~~~~~~Y~~WA~~~~f~vGD~LvF~y~~ 71 (181)
.-..+..|-+.+| |..-|| |.-|+.=-.|. -|-..|-...
T Consensus 208 G~lYqR~v~garG-~eqiPN----~~fW~~l~~l~-~Dg~~f~crs 247 (278)
T PF02157_consen 208 GILYQRFVMGARG-WEQIPN----YSFWAGLPSLV-ADGCDFVCRS 247 (278)
T ss_dssp ----------------------------------------------
T ss_pred HHHHHHHHhcCch-hhhCcC----HHHHHhhHHHH-HHHHhheecc
Confidence 3344555666788 999999 99998665544 5777776543
No 61
>PF10377 ATG11: Autophagy-related protein 11; InterPro: IPR019460 This family consists of proteins involved in telomere maintenance. In Schizosaccharomyces pombe (fission yeast) this protein is called Taf1 (taz1 interacting factor) and is part of the telomere cap complex. In Saccharomyces cerevisiae (baker's yeast) this protein is called ATG11 and is known to be involved in vacuolar targeting and peroxisome degradation [, ].
Probab=35.36 E-value=27 Score=26.99 Aligned_cols=18 Identities=28% Similarity=0.503 Sum_probs=15.5
Q ss_pred CceecCCEEEeeeeCCCC
Q 030240 57 TRFQVGDSLVWKYDATRD 74 (181)
Q Consensus 57 ~~f~vGD~LvF~y~~~~H 74 (181)
++|++||.+.|-++...|
T Consensus 41 ~~f~~GDlvLflpt~~~~ 58 (129)
T PF10377_consen 41 RNFQVGDLVLFLPTRNHN 58 (129)
T ss_pred ecCCCCCEEEEEecCCCC
Confidence 479999999999997655
No 62
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=35.23 E-value=62 Score=31.13 Aligned_cols=36 Identities=8% Similarity=0.165 Sum_probs=32.9
Q ss_pred EEEecccccEEEEeCCCCCCcCCCeEEEEeecCCCC
Q 030240 102 KVKLNKSGPFYFISGTKGSCEKGQKLIVVVMSSRRR 137 (181)
Q Consensus 102 ~v~L~~~G~~YFic~v~~HC~~GmKl~I~V~~~~~~ 137 (181)
+|.++.||..+|=|-+..|=..||.+...|.....+
T Consensus 506 rf~adNPG~W~~HCHie~H~~~G~~~~f~V~~~~~~ 541 (563)
T KOG1263|consen 506 RFVADNPGVWLMHCHIEDHLYLGMETVFIVGNGEES 541 (563)
T ss_pred EEEcCCCcEEEEEEecHHHHhccCeEEEEEeCCCcc
Confidence 678899999999999999999999999999987764
No 63
>MTH00038 COX2 cytochrome c oxidase subunit II; Provisional
Probab=35.16 E-value=53 Score=27.69 Aligned_cols=31 Identities=13% Similarity=0.322 Sum_probs=24.4
Q ss_pred EEEecccccEEEEeCCCCCCcCC---CeEEEEeecC
Q 030240 102 KVKLNKSGPFYFISGTKGSCEKG---QKLIVVVMSS 134 (181)
Q Consensus 102 ~v~L~~~G~~YFic~v~~HC~~G---mKl~I~V~~~ 134 (181)
.++.+++|.||..|+. -|..| |++.|.|.+.
T Consensus 183 ~~~~~~~G~~~g~Cse--~CG~~Hs~M~~~v~vv~~ 216 (229)
T MTH00038 183 TFFISRTGLFYGQCSE--ICGANHSFMPIVIESVPF 216 (229)
T ss_pred EEEcCCCEEEEEEccc--ccCcCcCCCeEEEEEeCH
Confidence 5677899999999994 67665 8888887653
No 64
>PF08194 DIM: DIM protein; InterPro: IPR013172 Drosophila immune-induced molecules (DIMs) are short proteins induced during the immune response of Drosophila []. This entry includes DIMs 1 to 4 and DIM23.
Probab=34.72 E-value=62 Score=19.91 Aligned_cols=23 Identities=17% Similarity=0.319 Sum_probs=11.2
Q ss_pred HHHHHHHHHhhhcccceEEEEeC
Q 030240 13 LVLTSLVLFSISFCEARDILVGG 35 (181)
Q Consensus 13 ~~~~~~~~ll~~~a~a~~~~VGg 35 (181)
|++.++.++.+..+.+-++++.|
T Consensus 8 ~~l~lLal~~a~~~~pG~ViING 30 (36)
T PF08194_consen 8 FALLLLALAAAVPATPGNVIING 30 (36)
T ss_pred HHHHHHHHHhcccCCCCeEEECc
Confidence 44444333344445566666655
No 65
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=34.31 E-value=1.1e+02 Score=28.78 Aligned_cols=78 Identities=10% Similarity=0.075 Sum_probs=0.0
Q ss_pred ceecCCEEEeeeeCC--------CCeEEEEccccCCC--CCCCCCcccccCCCcEEEec-ccccEEEEeCCCCCCcCCCe
Q 030240 58 RFQVGDSLVWKYDAT--------RDSVLQVTKEAYLS--CNTSSPVAEYRDGNTKVKLN-KSGPFYFISGTKGSCEKGQK 126 (181)
Q Consensus 58 ~f~vGD~LvF~y~~~--------~HsV~~V~~~~y~~--C~~~~~~~~~s~G~~~v~L~-~~G~~YFic~v~~HC~~GmK 126 (181)
.++.||+|+.+..+. -|.+.+......|. ....-++....+-..+|+++ ++|+|||=|-...... |+.
T Consensus 37 ~~~~GD~v~v~v~N~l~~~tsiHwHGl~q~~~~~~DGv~~vTq~pI~PG~s~~Y~f~~~~~~GT~WYHsH~~~~~~-Gl~ 115 (539)
T TIGR03389 37 YAREGDTVIVNVTNNVQYNVTIHWHGVRQLRNGWADGPAYITQCPIQPGQSYVYNFTITGQRGTLWWHAHISWLRA-TVY 115 (539)
T ss_pred EEEcCCEEEEEEEeCCCCCeeEecCCCCCCCCCCCCCCcccccCCcCCCCeEEEEEEecCCCeeEEEecCchhhhc-cce
Q ss_pred EEEEeecCCC
Q 030240 127 LIVVVMSSRR 136 (181)
Q Consensus 127 l~I~V~~~~~ 136 (181)
..|.|.....
T Consensus 116 G~lIV~~~~~ 125 (539)
T TIGR03389 116 GAIVILPKPG 125 (539)
T ss_pred EEEEEcCCCC
No 66
>TIGR01432 QOXA cytochrome aa3 quinol oxidase, subunit II. This enzyme catalyzes the oxidation of quinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. This subunit contains two transmembrane helices and a large external domain responsible for the binding and oxidation of quinol. QuoX is (presently) only found in gram positive bacteria of the Bacillus/Staphylococcus group. Like CyoA, the ubiquinol oxidase found in proteobacteria, the residues responsible for the ligation of Cu(a) and cytochrome c (found in the related cyt. c oxidases) are absent. Unlike CyoA, QoxA is in complex with a subunit I which contains cytochromes a similar to the cyt. c oxidases (as opposed to cytochromes b).
Probab=34.23 E-value=44 Score=27.76 Aligned_cols=31 Identities=16% Similarity=0.171 Sum_probs=25.6
Q ss_pred EEEecccccEEEEeCCCCCCcCC---CeEEEEeecC
Q 030240 102 KVKLNKSGPFYFISGTKGSCEKG---QKLIVVVMSS 134 (181)
Q Consensus 102 ~v~L~~~G~~YFic~v~~HC~~G---mKl~I~V~~~ 134 (181)
.++.+++|.||-.|+. .|-.| |++.|.|.+.
T Consensus 173 ~~~~~~~G~y~g~Cae--~CG~~Hs~M~~~v~v~~~ 206 (217)
T TIGR01432 173 YLQADQVGTYRGRNAN--FNGEGFADQTFDVNAVSE 206 (217)
T ss_pred EEEeCCCEEEEEEehh--hcCccccCCeEEEEEeCH
Confidence 6788899999999994 67764 8999998764
No 67
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=34.07 E-value=83 Score=30.31 Aligned_cols=62 Identities=19% Similarity=0.205 Sum_probs=43.3
Q ss_pred cCCceecCCEEEeeeeCCCCeEEEEccccCCCCCCCCC--ccc---ccCCCc-EEEecccccEEEEeC
Q 030240 55 EKTRFQVGDSLVWKYDATRDSVLQVTKEAYLSCNTSSP--VAE---YRDGNT-KVKLNKSGPFYFISG 116 (181)
Q Consensus 55 ~~~~f~vGD~LvF~y~~~~HsV~~V~~~~y~~C~~~~~--~~~---~s~G~~-~v~L~~~G~~YFic~ 116 (181)
+.++|..-|.+.|+|+.....++.+...+.|.-+.+-- ... -..|.+ .|.|.+.|+.|=+|=
T Consensus 211 a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W 278 (566)
T KOG2315|consen 211 ANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTW 278 (566)
T ss_pred hhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEEE
Confidence 56899999999999998888887776666666544421 111 123554 789999998776653
No 68
>MTH00023 COX2 cytochrome c oxidase subunit II; Validated
Probab=33.50 E-value=55 Score=27.81 Aligned_cols=31 Identities=16% Similarity=0.333 Sum_probs=24.7
Q ss_pred EEEecccccEEEEeCCCCCCcCC---CeEEEEeecC
Q 030240 102 KVKLNKSGPFYFISGTKGSCEKG---QKLIVVVMSS 134 (181)
Q Consensus 102 ~v~L~~~G~~YFic~v~~HC~~G---mKl~I~V~~~ 134 (181)
.++.+++|.||-.|+ ..|..| |++.|.|.+.
T Consensus 194 ~~~~~~~G~y~g~C~--e~CG~~Hs~M~~~v~vv~~ 227 (240)
T MTH00023 194 GFFIKRPGVFYGQCS--EICGANHSFMPIVIEAVSL 227 (240)
T ss_pred EEEcCCCEEEEEEch--hhcCcCccCCeEEEEEECH
Confidence 567789999999999 477765 8888887653
No 69
>PF12195 End_beta_barrel: Beta barrel domain of bacteriophage endosialidase; InterPro: IPR024427 This entry represents the beta barrel domain of endosialidases which is nested in a beta propeller domain. This beta barrel domain is approximately 80 amino acids in length and represents one of the two sialic acid binding sites of the enzyme [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=33.18 E-value=26 Score=25.24 Aligned_cols=29 Identities=21% Similarity=0.299 Sum_probs=15.0
Q ss_pred CCceecCCEEEeeeeCC-----CCeEEEE-ccccC
Q 030240 56 KTRFQVGDSLVWKYDAT-----RDSVLQV-TKEAY 84 (181)
Q Consensus 56 ~~~f~vGD~LvF~y~~~-----~HsV~~V-~~~~y 84 (181)
++-+.+||.+.|.-... +-+|..| ++..|
T Consensus 25 ~HGl~vGD~VnFsnsa~tGvSG~mTVatVid~ntF 59 (83)
T PF12195_consen 25 DHGLFVGDFVNFSNSAVTGVSGNMTVATVIDANTF 59 (83)
T ss_dssp T----TT-EEEEES-SSTT--EEEEEEEEEETTEE
T ss_pred cCceeecceEEEeccccccccccEEEEEEecCCcE
Confidence 45688999999988642 4556555 55444
No 70
>PF10670 DUF4198: Domain of unknown function (DUF4198)
Probab=32.53 E-value=1.5e+02 Score=23.48 Aligned_cols=58 Identities=10% Similarity=0.166 Sum_probs=30.8
Q ss_pred ceecCCEEEeeeeCCC----CeEEEEccccCCCCCC--CCCcccccCCCcEEEecccccEEEEe
Q 030240 58 RFQVGDSLVWKYDATR----DSVLQVTKEAYLSCNT--SSPVAEYRDGNTKVKLNKSGPFYFIS 115 (181)
Q Consensus 58 ~f~vGD~LvF~y~~~~----HsV~~V~~~~y~~C~~--~~~~~~~s~G~~~v~L~~~G~~YFic 115 (181)
.+++||.|.|+.--.. ..-+.+.......=+. .....+-..|...|.+.++|.+.+..
T Consensus 146 ~l~~g~~~~~~vl~~GkPl~~a~V~~~~~~~~~~~~~~~~~~~TD~~G~~~~~~~~~G~wli~a 209 (215)
T PF10670_consen 146 KLKAGDPLPFQVLFDGKPLAGAEVEAFSPGGWYDVEHEAKTLKTDANGRATFTLPRPGLWLIRA 209 (215)
T ss_pred cccCCCEEEEEEEECCeEcccEEEEEEECCCccccccceEEEEECCCCEEEEecCCCEEEEEEE
Confidence 5689999988775332 2223332111111000 11112335677788999999887654
No 71
>cd05820 CBM20_novamyl Novamyl (also known as acarviose transferase, ATase, maltogenic alpha-amylase, glucan 1,4-alpha-maltohydrolase, and AcbD), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Novamyl has a five-domain structure similar to that of cyclodextrin glucanotransferase (CGTase). Novamyl has a substrate-binding surface with an open groove which can accommodate both cyclodextrins and linear substrates. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific reco
Probab=32.08 E-value=32 Score=25.08 Aligned_cols=43 Identities=14% Similarity=0.288 Sum_probs=29.8
Q ss_pred eEEEEeCC--CCCccCCCC------CCccchhcccCCceecCCEEEeeeeC
Q 030240 29 RDILVGGK--TDSWKIPSS------QSDSLNQWAEKTRFQVGDSLVWKYDA 71 (181)
Q Consensus 29 ~~~~VGg~--~G~W~~~~~------~~~~Y~~WA~~~~f~vGD~LvF~y~~ 71 (181)
.-|+||+. .|.|+.... ....|..|.....+..|..+.|||-.
T Consensus 20 ~l~vvGs~~~LG~W~~~~~~a~~~l~~~~~~~W~~~~~lp~~~~veyK~v~ 70 (103)
T cd05820 20 FLYLTGSVPELGNWSTSTDQAVGPLLCPNWPDWFVVASVPAGTYIEFKFLK 70 (103)
T ss_pred EEEEEECcHHhCCCChhccccccccccCCCCCEEEEEEcCCCCcEEEEEEE
Confidence 34778874 355986211 12458889888888899999999964
No 72
>PF11604 CusF_Ec: Copper binding periplasmic protein CusF; InterPro: IPR021647 CusF is a periplasmic protein involved in copper and silver resistance in Escherichia coil. CusF forms a five-stranded beta-barrel OB fold. Cu(I) binds to H36, M47 and M49 which are conserved residues in the protein []. ; PDB: 2L55_A 2VB3_X 1ZEQ_X 2QCP_X 3E6Z_X 2VB2_X.
Probab=31.89 E-value=39 Score=23.15 Aligned_cols=24 Identities=17% Similarity=0.371 Sum_probs=15.2
Q ss_pred hhcccCCceecCCEEEeeeeCCCC
Q 030240 51 NQWAEKTRFQVGDSLVWKYDATRD 74 (181)
Q Consensus 51 ~~WA~~~~f~vGD~LvF~y~~~~H 74 (181)
.+-+.-..+++||.|.|.+.....
T Consensus 35 ~~~~~l~~l~~Gd~V~F~~~~~~~ 58 (70)
T PF11604_consen 35 ADPVDLAGLKPGDKVRFTFERTDD 58 (70)
T ss_dssp -TTSEESS-STT-EEEEEEEEETT
T ss_pred CChhhhhcCCCCCEEEEEEEECCC
Confidence 344444689999999999986433
No 73
>MTH00008 COX2 cytochrome c oxidase subunit II; Validated
Probab=31.67 E-value=61 Score=27.34 Aligned_cols=31 Identities=13% Similarity=0.380 Sum_probs=24.1
Q ss_pred EEEecccccEEEEeCCCCCCcCC---CeEEEEeecC
Q 030240 102 KVKLNKSGPFYFISGTKGSCEKG---QKLIVVVMSS 134 (181)
Q Consensus 102 ~v~L~~~G~~YFic~v~~HC~~G---mKl~I~V~~~ 134 (181)
.++.+++|.||..|+. -|..| |.+.|.|.+.
T Consensus 183 ~~~~~~~G~~~g~Cse--~CG~~Hs~M~~~v~vv~~ 216 (228)
T MTH00008 183 GFTITRPGVFYGQCSE--ICGANHSFMPIVLEAVDT 216 (228)
T ss_pred EEEeCCCEEEEEEChh--hcCcCccCceeEEEEECH
Confidence 5677899999999995 66654 8888887653
No 74
>PLN03148 Blue copper-like protein; Provisional
Probab=30.79 E-value=66 Score=26.17 Aligned_cols=7 Identities=29% Similarity=0.396 Sum_probs=3.2
Q ss_pred ceecCCE
Q 030240 58 RFQVGDS 64 (181)
Q Consensus 58 ~f~vGD~ 64 (181)
.+.|||.
T Consensus 22 ~~~VGd~ 28 (167)
T PLN03148 22 DHIVGAN 28 (167)
T ss_pred EEEeCCC
Confidence 3444444
No 75
>PF00686 CBM_20: Starch binding domain; InterPro: IPR002044 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain binds to starch, and is found often at the C terminus of a variety of glycosyl hydrolases acting on polysaccharides more rapidly than on oligosaccharides. Reations include: the hydrolysis of terminal 1,4-linked alpha-D-glucose residues successively from non-reducing ends of the chains with release of beta-D-glucose, the degradation of starch to cyclodextrins by formation of a 1,4-alpha-D-glucosidic bond, and hydrolysis of 1,4-alpha-glucosidic linkages in polysaccharides to remove successive maltose units from the non-reducing ends of the chains.; GO: 0003824 catalytic activity, 0005975 carbohydrate metabolic process; PDB: 1KUL_A 1ACZ_A 1AC0_A 1KUM_A 2Z0B_C 9CGT_A 3CGT_A 6CGT_A 4CGT_A 1CGT_A ....
Probab=30.51 E-value=54 Score=23.19 Aligned_cols=43 Identities=16% Similarity=0.427 Sum_probs=30.5
Q ss_pred eEEEEeCCC--CCccCCCC----CC---ccchhcccCCceecCCEEEeeeeC
Q 030240 29 RDILVGGKT--DSWKIPSS----QS---DSLNQWAEKTRFQVGDSLVWKYDA 71 (181)
Q Consensus 29 ~~~~VGg~~--G~W~~~~~----~~---~~Y~~WA~~~~f~vGD~LvF~y~~ 71 (181)
.-++||+.. |.|+..-. .+ ..|..|.....+..|..+.|||-.
T Consensus 17 ~v~i~Gs~~~LG~W~~~~a~~l~~~~~~~~~~~W~~~v~lp~~~~~eYKy~i 68 (96)
T PF00686_consen 17 SVYIVGSCPELGNWDPKKAVPLQWNEGTENYPIWSATVDLPAGTPFEYKYVI 68 (96)
T ss_dssp EEEEEESSGGGTTTSGGGSBESEBESSSSTTTSEEEEEEEETTSEEEEEEEE
T ss_pred EEEEEECcHHhCCCChHhccccccccCCCCCCeEEEEEECcCCCEEEEEEEE
Confidence 347888853 55986211 01 258999998888899999999963
No 76
>PF06376 DUF1070: Protein of unknown function (DUF1070); InterPro: IPR009424 This entry represents the arabinogalactan peptide family found in plants [].
Probab=30.33 E-value=95 Score=18.87 Aligned_cols=24 Identities=17% Similarity=0.459 Sum_probs=13.0
Q ss_pred CCCCCcchhhH--H-HHHHHHHHHHhh
Q 030240 156 APTSSAASFKA--S-LVLALGGLLAWV 179 (181)
Q Consensus 156 ~p~~~~~~~~~--~-~~~~~~~~~~~~ 179 (181)
+|.+....+-= + ++|.+++.+.|+
T Consensus 6 ap~~Dg~aiDqgiay~Lm~~Al~~tyl 32 (34)
T PF06376_consen 6 APTSDGKAIDQGIAYMLMLVALVVTYL 32 (34)
T ss_pred CcCCCcchhhHHHHHHHHHHHHHHHhh
Confidence 55555443322 2 677777666664
No 77
>PLN02991 oxidoreductase
Probab=29.14 E-value=3.7e+02 Score=25.71 Aligned_cols=35 Identities=20% Similarity=0.186 Sum_probs=29.4
Q ss_pred EEEecccccEEEEeCCCCCCcCCCeEEEEeecCCC
Q 030240 102 KVKLNKSGPFYFISGTKGSCEKGQKLIVVVMSSRR 136 (181)
Q Consensus 102 ~v~L~~~G~~YFic~v~~HC~~GmKl~I~V~~~~~ 136 (181)
+|..++||..+|=|-+--|=..||.+...|.....
T Consensus 481 RF~aDNPG~W~~HCHi~~h~~~gm~~~~~v~~~~~ 515 (543)
T PLN02991 481 YVSLDNVGMWNLRSELWERQYLGQQFYMRVYTTST 515 (543)
T ss_pred EEECCCCEEeeeeeCccccccccEEEEEEecCCCC
Confidence 67889999999999997677779999998886554
No 78
>PLN02354 copper ion binding / oxidoreductase
Probab=29.08 E-value=4.8e+02 Score=24.93 Aligned_cols=35 Identities=23% Similarity=0.272 Sum_probs=30.1
Q ss_pred EEEecccccEEEEeCCCCCCcCCCeEEEEeecCCC
Q 030240 102 KVKLNKSGPFYFISGTKGSCEKGQKLIVVVMSSRR 136 (181)
Q Consensus 102 ~v~L~~~G~~YFic~v~~HC~~GmKl~I~V~~~~~ 136 (181)
+|..++||..+|=|-+-.|=..||.+.+.|.+...
T Consensus 489 RF~aDNPGvW~~HCHi~~H~~~g~~l~~~v~~~~~ 523 (552)
T PLN02354 489 LLTFDNAGMWNIRSENWERRYLGQQLYASVLSPER 523 (552)
T ss_pred EEEecCCeEEeeeccccccccccceEEEEEeCCcc
Confidence 67889999999999997788899999999887544
No 79
>MTH00051 COX2 cytochrome c oxidase subunit II; Provisional
Probab=28.33 E-value=68 Score=27.16 Aligned_cols=31 Identities=16% Similarity=0.316 Sum_probs=24.4
Q ss_pred EEEecccccEEEEeCCCCCCcCC---CeEEEEeecC
Q 030240 102 KVKLNKSGPFYFISGTKGSCEKG---QKLIVVVMSS 134 (181)
Q Consensus 102 ~v~L~~~G~~YFic~v~~HC~~G---mKl~I~V~~~ 134 (181)
.++.+++|.||..|+. -|..| |.+.|.|.+.
T Consensus 187 ~~~~~~~G~y~g~Cse--~CG~~Hs~M~i~v~vv~~ 220 (234)
T MTH00051 187 SFFIKRPGVFYGQCSE--ICGANHSFMPIVIEGVSL 220 (234)
T ss_pred EEEeCCCEEEEEEChh--hcCcccccCeeEEEEECH
Confidence 4678899999999995 67654 8888887653
No 80
>MTH00076 COX2 cytochrome c oxidase subunit II; Provisional
Probab=28.02 E-value=72 Score=26.87 Aligned_cols=31 Identities=13% Similarity=0.204 Sum_probs=24.1
Q ss_pred EEEecccccEEEEeCCCCCCcC---CCeEEEEeecC
Q 030240 102 KVKLNKSGPFYFISGTKGSCEK---GQKLIVVVMSS 134 (181)
Q Consensus 102 ~v~L~~~G~~YFic~v~~HC~~---GmKl~I~V~~~ 134 (181)
.++.+++|.||..|+. -|.. .|++.|.|.+.
T Consensus 183 ~~~~~~~G~~~g~C~e--~CG~~Hs~M~~~v~vv~~ 216 (228)
T MTH00076 183 SFIASRPGVYYGQCSE--ICGANHSFMPIVVEATPL 216 (228)
T ss_pred EEEeCCcEEEEEEChh--hcCccccCCceEEEEeCH
Confidence 4677899999999995 5665 48888887653
No 81
>PF08980 DUF1883: Domain of unknown function (DUF1883); InterPro: IPR015073 This family consist of hypothetical bacterial proteins. ; PDB: 2B1Y_A.
Probab=26.48 E-value=15 Score=27.27 Aligned_cols=73 Identities=12% Similarity=0.231 Sum_probs=17.1
Q ss_pred CceecCCEEEeeeeCCCCeEEEEccccCCC-CCCCCCc---ccccCCCcEEEecccccEEEEeCCCCCCcCCC-eEEEEe
Q 030240 57 TRFQVGDSLVWKYDATRDSVLQVTKEAYLS-CNTSSPV---AEYRDGNTKVKLNKSGPFYFISGTKGSCEKGQ-KLIVVV 131 (181)
Q Consensus 57 ~~f~vGD~LvF~y~~~~HsV~~V~~~~y~~-C~~~~~~---~~~s~G~~~v~L~~~G~~YFic~v~~HC~~Gm-Kl~I~V 131 (181)
...+-||+++.+-+ ..-+|..++...|.+ ++-..-. ..++.-+..+++...|..|.+=+. |+..|- +..|+|
T Consensus 9 ~~~~~Gd~V~V~ls-~~~nV~LMd~~Nf~~y~~g~~~~y~GG~~~~~Pa~i~VP~sG~W~vvID~--~g~~~~~~~si~v 85 (94)
T PF08980_consen 9 GHLKRGDTVVVRLS-HQANVRLMDDSNFQRYKNGRRFKYIGGVAKRSPARITVPYSGHWNVVIDS--HGQSGEVEHSISV 85 (94)
T ss_dssp ----TT-------S-SS-------HHHHHHHHHHTT---S-----SSS------SSS----------TTSSS--------
T ss_pred hccCCCCEEEEEeC-CcccEEEcChhHhhhhccCCcceEEeeecccCceEEECCCCceEEEEEEC--CCCcEEEEEEEEe
Confidence 46788999999998 478888888887764 3332211 223445567888888888877664 666664 566666
Q ss_pred e
Q 030240 132 M 132 (181)
Q Consensus 132 ~ 132 (181)
.
T Consensus 86 ~ 86 (94)
T PF08980_consen 86 I 86 (94)
T ss_dssp -
T ss_pred c
Confidence 5
No 82
>PF14326 DUF4384: Domain of unknown function (DUF4384)
Probab=25.98 E-value=58 Score=22.65 Aligned_cols=17 Identities=24% Similarity=0.649 Sum_probs=13.8
Q ss_pred ceecCCEEEeeeeCCCC
Q 030240 58 RFQVGDSLVWKYDATRD 74 (181)
Q Consensus 58 ~f~vGD~LvF~y~~~~H 74 (181)
++++||.|.|.+..+.+
T Consensus 2 ~~~~Ge~v~~~~~~~~~ 18 (83)
T PF14326_consen 2 VYRVGERVRFRVTSNRD 18 (83)
T ss_pred cccCCCEEEEEEEeCCC
Confidence 57899999999986443
No 83
>cd05808 CBM20_alpha_amylase Alpha-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. This domain is found in several bacterial and fungal alpha-amylases including the maltopentaose-forming amylases (G5-amylases). Most alpha-amylases have, in addition to the C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13, which hydrolyzes internal alpha-1,4-glucosidic bonds in starch and related saccharides, yielding maltotriose and maltose. Two types of soluble substrates are used by alpha-amylases including long substrates (e.g. amylose) and short substrates (e.g. maltodextrins or maltooligosaccharides). The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. lafo
Probab=25.87 E-value=61 Score=22.63 Aligned_cols=41 Identities=17% Similarity=0.463 Sum_probs=27.4
Q ss_pred EEEEeCC--CCCccCCCC---CCccchhcccCCceecCCEEEeeee
Q 030240 30 DILVGGK--TDSWKIPSS---QSDSLNQWAEKTRFQVGDSLVWKYD 70 (181)
Q Consensus 30 ~~~VGg~--~G~W~~~~~---~~~~Y~~WA~~~~f~vGD~LvF~y~ 70 (181)
-+++|+. .|.|..... ....+..|.....+..|+.+.|+|-
T Consensus 17 l~v~G~~~~lG~W~~~~a~~l~~~~~~~W~~~v~l~~~~~~eYKy~ 62 (95)
T cd05808 17 VYVVGNVPELGNWSPANAVALSAATYPVWSGTVDLPAGTAIEYKYI 62 (95)
T ss_pred EEEEeCcHHhCCCChhhCccCCCCCCCCEEEEEEeCCCCeEEEEEE
Confidence 3677863 455974311 1234778987777888999999995
No 84
>PF11766 Candida_ALS_N: Cell-wall agglutinin N-terminal ligand-sugar binding ; InterPro: IPR024672 This N-terminal domain is likely to be the sugar or ligand binding domain of yeast alpha-agglutinin [] and agglutinin-like (ALS) proteins.; PDB: 2YLH_A 2Y7M_A 2Y7L_A 2Y7O_A 2Y7N_A.
Probab=25.85 E-value=44 Score=28.84 Aligned_cols=36 Identities=25% Similarity=0.478 Sum_probs=23.8
Q ss_pred CCceecCCEE------EeeeeCCCCeEEEE-ccccCCCCCCCC
Q 030240 56 KTRFQVGDSL------VWKYDATRDSVLQV-TKEAYLSCNTSS 91 (181)
Q Consensus 56 ~~~f~vGD~L------vF~y~~~~HsV~~V-~~~~y~~C~~~~ 91 (181)
...++.||+. ||||...+.+|... +...|..|++..
T Consensus 6 gs~v~~GDtFtL~MPcVfKf~t~~~sv~L~~~~~~yAtC~~~~ 48 (249)
T PF11766_consen 6 GSNVSPGDTFTLTMPCVFKFTTSQTSVDLTAGGTTYATCTFQS 48 (249)
T ss_dssp TTT--TT-EEEEEEETEEEESSS-SEEEEEETTEEEEEEEEE-
T ss_pred ccccCCCCEEEEecceEEEEecCCCEEEEEeCCEEEEEecccC
Confidence 3478999997 78888777777554 788888887764
No 85
>cd05810 CBM20_alpha_MTH Glucan 1,4-alpha-maltotetraohydrolase (alpha-MTH), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Alpha-MTH, also known as maltotetraose-forming exo-amylase or G4-amylase, is an exo-amylase found in bacteria that degrades starch from its non-reducing end. Most alpha-MTHs have, in addition to the C-terminal CBM20 domain, an N-terminal glycosyl hydrolase family 13 catalytic domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio
Probab=25.79 E-value=48 Score=23.95 Aligned_cols=41 Identities=15% Similarity=0.420 Sum_probs=28.2
Q ss_pred EEEEeCC--CCCccCCCC---CCccchhcccCCceecCCEEEeeee
Q 030240 30 DILVGGK--TDSWKIPSS---QSDSLNQWAEKTRFQVGDSLVWKYD 70 (181)
Q Consensus 30 ~~~VGg~--~G~W~~~~~---~~~~Y~~WA~~~~f~vGD~LvF~y~ 70 (181)
-|++|+. .|.|..... ....|..|.....+..|..+.|||-
T Consensus 18 l~v~Gs~~~LG~W~~~~a~~l~~~~~~~W~~~v~lp~~~~veyKyv 63 (97)
T cd05810 18 VYVVGNVPQLGNWSPADAVKLDPTAYPTWSGSISLPASTNVEWKCL 63 (97)
T ss_pred EEEEEChHHhCCCChhhcccccCCCCCeEEEEEEcCCCCeEEEEEE
Confidence 3778874 355874321 1134778988888889999999995
No 86
>MTH00027 COX2 cytochrome c oxidase subunit II; Provisional
Probab=25.64 E-value=93 Score=26.96 Aligned_cols=31 Identities=19% Similarity=0.336 Sum_probs=24.4
Q ss_pred EEEecccccEEEEeCCCCCCcCC---CeEEEEeecC
Q 030240 102 KVKLNKSGPFYFISGTKGSCEKG---QKLIVVVMSS 134 (181)
Q Consensus 102 ~v~L~~~G~~YFic~v~~HC~~G---mKl~I~V~~~ 134 (181)
.++.+++|.||-.|+. -|..| |.+.|.|.+.
T Consensus 217 ~~~~~~~G~y~g~CsE--~CG~~Hs~Mpi~v~vv~~ 250 (262)
T MTH00027 217 GFLIKRPGIFYGQCSE--ICGANHSFMPIVVESVSL 250 (262)
T ss_pred EEEcCCcEEEEEEcch--hcCcCcCCCeEEEEEECH
Confidence 5677899999999984 66654 8888887653
No 87
>PF06462 Hyd_WA: Propeller; InterPro: IPR006624 Tectonins I and II are two dominant proteins in the nuclei and nuclear matrix from plasmodia of Physarum polycephalum (Slime mold) which encode 217 and 353 amino acids, respectively. Tectonin I is homologous to the C-terminal two-thirds of tectonin II. Both proteins contain six tandem repeats that are each 33-37 amino acids in length and define a new consensus sequence. Homologous repeats are found in L-6, a bacterial lipopolysaccharide-binding lectin from horseshoe crab hemocytes. The repetitive sequences of the tectonins and L-6 are reminiscent of the WD repeats of the beta-subunit of G proteins, suggesting that they form beta-propeller domains. The tectonins may be lectins that function as part of a transmembrane signalling complex during phagocytosis [].
Probab=25.31 E-value=1.3e+02 Score=17.41 Aligned_cols=25 Identities=24% Similarity=0.421 Sum_probs=20.9
Q ss_pred EEEecccccEEEEeCCCCCCcCCCe
Q 030240 102 KVKLNKSGPFYFISGTKGSCEKGQK 126 (181)
Q Consensus 102 ~v~L~~~G~~YFic~v~~HC~~GmK 126 (181)
.+.++..|.-||=.++...|..|+.
T Consensus 3 VWav~~~G~v~~R~Gis~~~P~G~~ 27 (32)
T PF06462_consen 3 VWAVTSDGSVYFRTGISPSNPEGTS 27 (32)
T ss_pred EEEEcCCCCEEEECcCCCCCCCCCC
Confidence 4567788999999999999999873
No 88
>PLN02991 oxidoreductase
Probab=25.16 E-value=2.6e+02 Score=26.77 Aligned_cols=79 Identities=11% Similarity=0.112 Sum_probs=46.5
Q ss_pred CceecCCEEEeeeeCC--------CCeEEEEccccCCCC-CCCCCcccccCCCcEEEe-cccccEEEEeCCCCCCcCCCe
Q 030240 57 TRFQVGDSLVWKYDAT--------RDSVLQVTKEAYLSC-NTSSPVAEYRDGNTKVKL-NKSGPFYFISGTKGSCEKGQK 126 (181)
Q Consensus 57 ~~f~vGD~LvF~y~~~--------~HsV~~V~~~~y~~C-~~~~~~~~~s~G~~~v~L-~~~G~~YFic~v~~HC~~GmK 126 (181)
..++.||+|+.+..+. =|.+.+......|.= ...-++....+=..+|++ +++|+|||=+-...+-..|..
T Consensus 61 I~~~~GD~v~V~V~N~L~~~ttiHWHGi~q~~~~~~DGv~~tQcpI~PG~sftY~F~~~~q~GT~WYHsH~~~q~~~Gl~ 140 (543)
T PLN02991 61 IISVTNDNLIINVFNHLDEPFLISWSGIRNWRNSYQDGVYGTTCPIPPGKNYTYALQVKDQIGSFYYFPSLGFHKAAGGF 140 (543)
T ss_pred EEEECCCEEEEEecCCCCCCccEEECCcccCCCccccCCCCCCCccCCCCcEEEEEEeCCCCcceEEecCcchhhhCCCe
Confidence 5688999999988764 133333211111210 001133222222236777 479999999887777667888
Q ss_pred EEEEeecCC
Q 030240 127 LIVVVMSSR 135 (181)
Q Consensus 127 l~I~V~~~~ 135 (181)
-.|.|....
T Consensus 141 G~lIV~~~~ 149 (543)
T PLN02991 141 GAIRISSRP 149 (543)
T ss_pred eeEEEeCCc
Confidence 888887643
No 89
>PRK10861 signal peptidase I; Provisional
Probab=24.88 E-value=1.5e+02 Score=26.59 Aligned_cols=15 Identities=33% Similarity=0.530 Sum_probs=12.3
Q ss_pred CceecCCEEEeeeeC
Q 030240 57 TRFQVGDSLVWKYDA 71 (181)
Q Consensus 57 ~~f~vGD~LvF~y~~ 71 (181)
.+.+.||.++|++..
T Consensus 124 ~~p~RGDIVVF~~P~ 138 (324)
T PRK10861 124 GHPKRGDIVVFKYPE 138 (324)
T ss_pred CCCCCCCEEEEecCC
Confidence 456889999999964
No 90
>PF09792 But2: Ubiquitin 3 binding protein But2 C-terminal domain; InterPro: IPR018620 This entry represents a presumed C-terminal domain of ubiquitin 3 binding proteins (But2). But2 is conserved in yeasts. It binds to Uba3 and is involved in the NEDD8 signalling pathway [].
Probab=24.69 E-value=1.1e+02 Score=23.99 Aligned_cols=32 Identities=22% Similarity=0.323 Sum_probs=26.2
Q ss_pred EEEecccccEEEEeCCCCCCcCCCeEEEEeecCCC
Q 030240 102 KVKLNKSGPFYFISGTKGSCEKGQKLIVVVMSSRR 136 (181)
Q Consensus 102 ~v~L~~~G~~YFic~v~~HC~~GmKl~I~V~~~~~ 136 (181)
++++.. |.-|-|.+ ..|..||++...+.....
T Consensus 100 ~~~~~p-G~~y~i~~--f~Cp~g~~v~ye~~~~g~ 131 (143)
T PF09792_consen 100 TFTVSP-GNSYVINT--FPCPAGQAVSYEMSSAGD 131 (143)
T ss_pred ceEECC-CCceEeCc--EeCCCCCEEEEEEEecCC
Confidence 567775 99999986 699999999998887644
No 91
>PF12124 Nsp3_PL2pro: Coronavirus polyprotein cleavage domain; InterPro: IPR022733 This domain is found in SARS coronaviruses, and is about 70 amino acids in length. It is found associated with various other coronavirus proteins due to the polyprotein nature of most viral translation. PL2pro is a domain of the non-structural protein nsp3. The domain performs three of the cleavages required to separate the translated polyprotein into its distinct proteins. ; GO: 0004197 cysteine-type endopeptidase activity, 0008242 omega peptidase activity, 0016740 transferase activity, 0016788 hydrolase activity, acting on ester bonds, 0016817 hydrolase activity, acting on acid anhydrides; PDB: 2KAF_A 2KQW_A.
Probab=24.25 E-value=64 Score=21.81 Aligned_cols=21 Identities=29% Similarity=0.705 Sum_probs=12.3
Q ss_pred cchhcc-cCCc-------eecCCEEEeee
Q 030240 49 SLNQWA-EKTR-------FQVGDSLVWKY 69 (181)
Q Consensus 49 ~Y~~WA-~~~~-------f~vGD~LvF~y 69 (181)
.|.+|+ ++++ .+-||.|+++-
T Consensus 14 sy~dwsysgqrtelgveflkrgdkivyht 42 (66)
T PF12124_consen 14 SYRDWSYSGQRTELGVEFLKRGDKIVYHT 42 (66)
T ss_dssp EETTEE----EETTEEEEEEETTEEEEE-
T ss_pred cccccccccceehhhhHHHhcCCEEEEEe
Confidence 377887 3332 56789988765
No 92
>COG3627 PhnJ Uncharacterized enzyme of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=23.75 E-value=49 Score=28.39 Aligned_cols=25 Identities=24% Similarity=0.486 Sum_probs=21.5
Q ss_pred cEEEecccccEEEEeCCCCCCcCCC
Q 030240 101 TKVKLNKSGPFYFISGTKGSCEKGQ 125 (181)
Q Consensus 101 ~~v~L~~~G~~YFic~v~~HC~~Gm 125 (181)
+.+.++.-|-+-|+|+.-+||+.-+
T Consensus 257 DEvi~DD~G~rmfvCSDTD~C~~r~ 281 (291)
T COG3627 257 DEVVLDDKGGRMFVCSDTDFCEQRR 281 (291)
T ss_pred eeeEEcCCCceEEEecCchHHHhHH
Confidence 4778888899999999999998654
No 93
>PF01345 DUF11: Domain of unknown function DUF11; InterPro: IPR001434 This group of sequences is represented by a conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis (Streptococcus faecalis), and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydia trachomatis outer membrane proteins. In C. trachomatis, three cysteine-rich proteins (also believed to be lipoproteins), MOMP, OMP6 and OMP3, make up the extracellular matrix of the outer membrane []. They are involved in the essential structural integrity of both the elementary body (EB) and recticulate body (RB) phase. They are thought to be involved in porin formation and, as these bacteria lack the peptidoglycan layer common to most Gram-negative microbes, such proteins are highly important in the pathogenicity of the organism.; GO: 0005727 extrachromosomal circular DNA
Probab=22.36 E-value=66 Score=21.63 Aligned_cols=21 Identities=10% Similarity=0.283 Sum_probs=18.5
Q ss_pred chhcccCCceecCCEEEeeee
Q 030240 50 LNQWAEKTRFQVGDSLVWKYD 70 (181)
Q Consensus 50 Y~~WA~~~~f~vGD~LvF~y~ 70 (181)
..+|+....+++||.|+|...
T Consensus 28 ~~k~~~~~~~~~Gd~v~ytit 48 (76)
T PF01345_consen 28 ITKTVNPSTANPGDTVTYTIT 48 (76)
T ss_pred EEEecCCCcccCCCEEEEEEE
Confidence 678888999999999998885
No 94
>PF11153 DUF2931: Protein of unknown function (DUF2931); InterPro: IPR021326 Some members in this family of proteins are annotated as lipoproteins however this cannot be confirmed. Currently, there is no known function.
Probab=22.33 E-value=75 Score=26.12 Aligned_cols=31 Identities=16% Similarity=0.477 Sum_probs=22.3
Q ss_pred ccCCCCCCccchhcccCCceecCCEEEeeee
Q 030240 40 WKIPSSQSDSLNQWAEKTRFQVGDSLVWKYD 70 (181)
Q Consensus 40 W~~~~~~~~~Y~~WA~~~~f~vGD~LvF~y~ 70 (181)
|.+....+.+|..|...-.+.-+|...-.+.
T Consensus 30 W~~~~~~P~~ypv~V~~~~~~~~~~~~~~~~ 60 (216)
T PF11153_consen 30 WRFGVAAPKHYPVWVTYAYFVDGDGDWYRFP 60 (216)
T ss_pred cEEEEecCCCCEEEEEEEEEEeCCCcEEEEe
Confidence 8888776778999988777766666654443
No 95
>MTH00185 COX2 cytochrome c oxidase subunit II; Provisional
Probab=21.82 E-value=1.2e+02 Score=25.61 Aligned_cols=30 Identities=13% Similarity=0.359 Sum_probs=23.1
Q ss_pred EEEecccccEEEEeCCCCCCcCC---CeEEEEeec
Q 030240 102 KVKLNKSGPFYFISGTKGSCEKG---QKLIVVVMS 133 (181)
Q Consensus 102 ~v~L~~~G~~YFic~v~~HC~~G---mKl~I~V~~ 133 (181)
.+..+++|.||-.|+. -|..| |.+.|.|.+
T Consensus 183 ~~~~~~~G~~~g~Cse--~CG~~Hs~M~~~v~vv~ 215 (230)
T MTH00185 183 TFIISRPGLYYGQCSE--ICGANHSFMPIVVEAVP 215 (230)
T ss_pred EEEeCCcEEEEEEchh--hcCcCcCCCeEEEEEEC
Confidence 4567899999999984 56654 888887765
No 96
>COG1430 Uncharacterized conserved protein [Function unknown]
Probab=21.42 E-value=56 Score=25.40 Aligned_cols=20 Identities=25% Similarity=0.544 Sum_probs=17.2
Q ss_pred hcccCCceecCCEEEeeeeC
Q 030240 52 QWAEKTRFQVGDSLVWKYDA 71 (181)
Q Consensus 52 ~WA~~~~f~vGD~LvF~y~~ 71 (181)
.|++..++++||.|.|....
T Consensus 104 G~~~~~~i~vGd~v~~~~~~ 123 (126)
T COG1430 104 GWAARLGIKVGDRVEFRPLG 123 (126)
T ss_pred CchhhcCCccCCEEEecccC
Confidence 58889999999999998753
No 97
>MTH00080 COX2 cytochrome c oxidase subunit II; Provisional
Probab=20.85 E-value=1.4e+02 Score=25.31 Aligned_cols=31 Identities=19% Similarity=0.202 Sum_probs=24.3
Q ss_pred EEEecccccEEEEeCCCCCCcCC---CeEEEEeecC
Q 030240 102 KVKLNKSGPFYFISGTKGSCEKG---QKLIVVVMSS 134 (181)
Q Consensus 102 ~v~L~~~G~~YFic~v~~HC~~G---mKl~I~V~~~ 134 (181)
.++.+++|.||-.|+. -|..| |++.|.|.+.
T Consensus 186 ~~~~~~~G~y~g~CsE--~CG~~Hs~M~~~v~vv~~ 219 (231)
T MTH00080 186 CYSFPMPGVFYGQCSE--ICGANHSFMPIAVEVTLL 219 (231)
T ss_pred EEEEcCceEEEEEehh--hcCcCccCCEEEEEEECH
Confidence 5678899999999994 66654 8888887653
No 98
>cd05813 CBM20_genethonin_1 Genethonin-1, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Genethonin-1 is a human skeletal muscle protein with no known function. It contains a C-terminal CBM20 domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=20.82 E-value=82 Score=22.24 Aligned_cols=40 Identities=20% Similarity=0.413 Sum_probs=27.3
Q ss_pred EEEeCC--CCCccCCCC-CCccchhcccCCceecCCEEEeeee
Q 030240 31 ILVGGK--TDSWKIPSS-QSDSLNQWAEKTRFQVGDSLVWKYD 70 (181)
Q Consensus 31 ~~VGg~--~G~W~~~~~-~~~~Y~~WA~~~~f~vGD~LvF~y~ 70 (181)
+++|+. .|.|+.... ...++..|.....+..++.+.|+|-
T Consensus 19 ~v~G~~~~LG~W~~~~~l~~~~~~~W~~~v~lp~~~~ieYky~ 61 (95)
T cd05813 19 AVTGDHEELGSWHSYIPLQYVKDGFWSASVSLPVDTHVEWKFV 61 (95)
T ss_pred EEEcChHHHCCCCccccCcCCCCCCEEEEEEecCCCcEEEEEE
Confidence 577764 355885221 1234778988878888999999885
No 99
>PF05324 Sperm_Ag_HE2: Sperm antigen HE2; InterPro: IPR007988 This family consists of several variants of the human and chimpanzee (Pan troglodytes) sperm antigen proteins (HE2 and EP2 respectively). The EP2 gene codes for a family of androgen-dependent, epididymis-specific secretory proteins.The EP2 gene uses alternative promoters and differential splicing to produce a family of variant messages. The translated putative protein variants differ significantly from each other. Some of these putative proteins have similarity to beta-defensins, a family of antimicrobial peptides [].; GO: 0005576 extracellular region
Probab=20.26 E-value=94 Score=21.94 Aligned_cols=32 Identities=31% Similarity=0.308 Sum_probs=18.7
Q ss_pred hhHHHHH-HHHHHHHHHHhhhcccceEEEEeCCCC
Q 030240 5 SRTLASS-SLVLTSLVLFSISFCEARDILVGGKTD 38 (181)
Q Consensus 5 ~~~~~~~-~~~~~~~~~ll~~~a~a~~~~VGg~~G 38 (181)
||.+..| +||++ ++|+.+.+.|..+.=.+.+|
T Consensus 2 q~llP~~~sLLLv--aLLfPG~s~a~~vnh~~teg 34 (73)
T PF05324_consen 2 QRLLPSFVSLLLV--ALLFPGSSRARHVNHQGTEG 34 (73)
T ss_pred cchhHHHHHHHHH--HHHccCcccccccccccccC
Confidence 4556543 33333 34688888887766555555
No 100
>KOG3416 consensus Predicted nucleic acid binding protein [General function prediction only]
Probab=20.26 E-value=1.2e+02 Score=23.88 Aligned_cols=37 Identities=24% Similarity=0.364 Sum_probs=23.1
Q ss_pred EEEEeCCCCCccCCCCCCccchhcc-cCCceecCCEEEeeeeCCCCeE
Q 030240 30 DILVGGKTDSWKIPSSQSDSLNQWA-EKTRFQVGDSLVWKYDATRDSV 76 (181)
Q Consensus 30 ~~~VGg~~G~W~~~~~~~~~Y~~WA-~~~~f~vGD~LvF~y~~~~HsV 76 (181)
..+|||+.| .+ +..-|- ....|+.||+|.++ .+.-++
T Consensus 40 ~~kVaD~Tg--sI------~isvW~e~~~~~~PGDIirLt--~Gy~Si 77 (134)
T KOG3416|consen 40 SCKVADETG--SI------NISVWDEEGCLIQPGDIIRLT--GGYASI 77 (134)
T ss_pred EEEEecccc--eE------EEEEecCcCcccCCccEEEec--ccchhh
Confidence 356888777 22 245564 24689999999664 344444
Done!