Query 030240
Match_columns 181
No_of_seqs 122 out of 865
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 17:16:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030240.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030240hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jer_A Cucumber stellacyanin; 100.0 9.1E-43 3.1E-47 272.2 7.6 109 27-137 2-112 (138)
2 1x9u_A Umecyanin; cupredoxin, 100.0 3.6E-40 1.2E-44 250.6 8.3 106 29-136 2-108 (116)
3 1ws8_A Mavicyanin; oxidized fo 100.0 3.6E-40 1.2E-44 248.1 6.9 106 27-135 1-106 (109)
4 2cbp_A Cucumber basic protein; 100.0 7.7E-38 2.6E-42 230.5 6.9 96 29-132 1-96 (96)
5 1f56_A Plantacyanin; cupredoxi 100.0 5E-34 1.7E-38 208.3 8.5 91 29-132 1-91 (91)
6 1qhq_A Protein (auracyanin); e 99.4 1.4E-12 4.6E-17 99.6 8.5 97 26-132 14-139 (140)
7 1bxv_A Plastocyanin; copper pr 99.3 7.3E-12 2.5E-16 87.9 6.1 86 30-132 4-91 (91)
8 2cal_A Rusticyanin; iron respi 99.1 6.4E-11 2.2E-15 92.8 7.1 76 56-132 62-154 (154)
9 1iuz_A Plastocyanin; electron 99.1 9.1E-11 3.1E-15 84.3 5.7 92 29-132 2-98 (98)
10 2aan_A Auracyanin A; cupredoxi 99.0 1.2E-09 4.2E-14 83.1 9.9 96 26-132 16-139 (139)
11 1plc_A Plastocyanin; electron 99.0 6E-10 2E-14 79.7 7.5 91 30-132 2-99 (99)
12 1pmy_A Pseudoazurin; electron 99.0 8.8E-10 3E-14 83.5 7.9 82 34-133 11-94 (123)
13 1paz_A Pseudoazurin precursor; 99.0 1E-09 3.5E-14 83.1 7.7 82 34-133 11-94 (123)
14 2gim_A Plastocyanin; beta shee 99.0 2.1E-09 7.3E-14 77.5 8.6 86 30-132 5-105 (106)
15 2plt_A Plastocyanin; electron 99.0 4.3E-10 1.5E-14 80.1 4.9 92 29-132 2-98 (98)
16 3erx_A Pseudoazurin; copper pr 99.0 8.7E-10 3E-14 83.7 6.8 85 31-133 5-94 (123)
17 1kdj_A Plastocyanin; electron 99.0 1.3E-09 4.4E-14 78.2 7.3 91 30-132 2-102 (102)
18 1byp_A Protein (plastocyanin); 98.9 2.4E-09 8.3E-14 76.4 7.1 91 30-132 2-99 (99)
19 1b3i_A PETE protein, protein ( 98.9 4.4E-09 1.5E-13 74.7 8.0 89 30-132 4-97 (97)
20 3tu6_A Pseudoazurin (blue copp 98.9 4.5E-09 1.5E-13 80.1 7.4 84 34-134 12-97 (127)
21 3ef4_A Pseudoazurin, blue copp 98.9 7.6E-09 2.6E-13 78.7 8.2 83 34-133 10-95 (124)
22 1pcs_A Plastocyanin; electron 98.8 5.5E-09 1.9E-13 74.4 4.3 92 29-132 3-98 (98)
23 4hci_A Cupredoxin 1; structura 98.4 8.7E-08 3E-12 68.8 2.6 84 26-132 11-100 (100)
24 1cuo_A Protein (azurin ISO-2); 98.4 3.7E-06 1.3E-10 64.0 10.6 92 29-132 3-128 (129)
25 3ay2_A Lipid modified azurin p 98.3 1.5E-06 5.1E-11 69.2 8.4 92 29-132 43-166 (167)
26 3c75_A Amicyanin; copper prote 98.3 1E-06 3.4E-11 66.9 5.9 70 56-132 61-132 (132)
27 3cvb_A Plastocyanin; cupredoxi 98.3 3.2E-06 1.1E-10 60.2 8.0 89 30-132 4-104 (105)
28 2ux6_A Pseudoazurin; type-1 co 98.2 1.8E-06 6.2E-11 64.9 6.2 69 56-133 22-92 (122)
29 2ov0_A Amicyanin; beta-sandwic 98.1 5.4E-06 1.8E-10 60.0 6.3 84 26-132 16-105 (105)
30 1id2_A Amicyanin; beta barrel, 98.1 6.3E-06 2.2E-10 59.9 6.5 87 27-132 18-106 (106)
31 2iaa_C Azurin; quinoprotein, t 98.1 1.7E-05 5.7E-10 60.3 9.1 91 30-132 3-127 (128)
32 2ccw_A Azurin II, AZN-2; elect 98.1 1.6E-05 5.5E-10 60.4 8.4 92 29-132 3-128 (129)
33 1nwp_A Azurin; electron transp 98.1 1.6E-05 5.4E-10 60.5 8.2 92 29-132 3-128 (128)
34 1iko_P Ephrin-B2; greek KEY, g 97.5 3.9E-05 1.3E-09 61.7 2.9 77 59-135 26-142 (178)
35 2cua_A Protein (CUA); CUA cent 97.3 0.00063 2.1E-08 51.9 7.2 82 29-133 46-135 (135)
36 1iby_A Nitrosocyanin; RED copp 97.3 0.00036 1.2E-08 50.4 5.4 66 56-132 39-111 (112)
37 3fsa_A Azurin; copper, cupredo 96.8 0.017 5.7E-07 43.8 10.5 88 30-132 4-125 (125)
38 2vsm_B Ephrin-B2; developmenta 96.7 0.0019 6.4E-08 50.0 4.8 75 59-133 25-139 (140)
39 3czu_B Ephrin-A1; ATP-binding, 96.6 0.0044 1.5E-07 49.9 6.4 101 25-136 26-163 (182)
40 3d12_B Ephrin-B3; beta propell 96.4 0.0046 1.6E-07 47.9 5.1 74 58-132 23-140 (141)
41 2x11_B Ephrin-A5; receptor-sig 96.3 0.0057 1.9E-07 49.0 5.7 77 57-136 52-165 (177)
42 1shx_A Ephrin-A5; ephrin signa 96.1 0.011 3.8E-07 45.5 6.0 76 57-135 23-135 (138)
43 2dv6_A Nitrite reductase; elec 95.3 0.02 6.8E-07 50.3 5.3 75 55-136 55-135 (447)
44 1fwx_A Nitrous oxide reductase 94.9 0.022 7.6E-07 53.1 4.7 68 56-134 514-593 (595)
45 3s8f_B Cytochrome C oxidase su 94.9 0.047 1.6E-06 43.1 5.8 69 55-132 93-167 (168)
46 3sbq_A Nitrous-oxide reductase 94.5 0.043 1.5E-06 51.5 5.4 67 56-133 559-637 (638)
47 2wo3_B Ephrin-A2; transferase- 94.3 0.089 3E-06 41.3 6.1 76 57-135 32-145 (157)
48 3hei_B Ephrin-A1; EPH receptor 91.9 0.2 6.8E-06 38.2 4.6 35 57-91 22-67 (132)
49 1mzy_A Copper-containing nitri 85.0 1.1 3.9E-05 37.7 5.1 75 57-134 66-153 (333)
50 1oe1_A Dissimilatory copper-co 84.2 1.3 4.5E-05 37.2 5.1 76 57-135 67-154 (336)
51 1kbv_A ANIA, major outer membr 81.2 1.4 4.9E-05 37.1 4.2 75 57-134 72-157 (327)
52 2zoo_A Probable nitrite reduct 79.7 1.1 3.9E-05 39.0 3.2 75 57-134 62-147 (442)
53 3kw8_A Laccase, putative coppe 79.1 2.7 9.4E-05 34.5 5.2 81 57-137 170-269 (276)
54 2bw4_A Copper-containing nitri 73.6 4 0.00014 34.2 4.9 76 57-135 73-160 (340)
55 1oe1_A Dissimilatory copper-co 72.9 3.3 0.00011 34.7 4.2 36 102-137 286-322 (336)
56 1fft_B Ubiquinol oxidase; elec 68.0 14 0.00049 31.5 7.1 65 56-132 152-225 (315)
57 3cg8_A Laccase; oxidoreductase 67.8 6.8 0.00023 33.3 5.0 79 57-137 211-310 (343)
58 3gdc_A Multicopper oxidase; be 67.8 8.4 0.00029 31.7 5.5 79 57-136 68-157 (288)
59 3iuw_A Activating signal coint 66.2 2.9 0.0001 29.3 2.0 17 56-72 35-52 (83)
60 1mzy_A Copper-containing nitri 58.9 8.2 0.00028 32.2 3.9 35 102-136 286-321 (333)
61 1cyx_A CYOA; electron transpor 56.1 11 0.00036 30.6 3.9 64 57-132 43-115 (205)
62 3l6w_A Hemocyanin 1; cupredoxi 55.1 8.2 0.00028 35.2 3.3 74 57-132 413-491 (491)
63 4i1k_A B3 domain-containing tr 54.6 3 0.0001 31.6 0.4 28 52-79 110-137 (146)
64 3hb3_B Cytochrome C oxidase su 54.2 9.9 0.00034 32.3 3.6 31 102-134 232-265 (298)
65 2zwn_A Two-domain type laccase 52.7 13 0.00045 31.3 4.1 77 56-134 36-127 (339)
66 3gdc_A Multicopper oxidase; be 52.2 5.4 0.00019 32.9 1.6 75 56-133 196-288 (288)
67 2gsm_B Cytochrome C oxidase su 51.9 12 0.0004 31.1 3.6 31 102-134 214-247 (262)
68 1v54_B Cytochrome C oxidase po 51.1 11 0.00036 30.7 3.1 31 102-134 183-216 (227)
69 2q9o_A Laccase-1; multicopper 50.6 21 0.00071 32.3 5.4 76 57-135 69-159 (559)
70 1sdd_A Coagulation factor V; c 50.6 2.3 8E-05 35.5 -0.9 77 56-134 216-301 (306)
71 1yel_A AT1G16640; CESG, protei 49.1 6.6 0.00023 27.6 1.4 18 54-71 73-90 (104)
72 1zpu_A Iron transport multicop 45.2 36 0.0012 30.5 6.0 77 56-135 35-126 (534)
73 3sqr_A Laccase; multicopper ox 45.0 37 0.0013 31.2 6.1 34 102-135 156-189 (580)
74 1aoz_A Ascorbate oxidase; oxid 44.7 36 0.0012 30.5 6.0 78 56-135 35-125 (552)
75 3g5w_A Multicopper oxidase typ 44.3 27 0.00094 29.1 4.8 34 102-135 239-278 (318)
76 3g5w_A Multicopper oxidase typ 43.8 19 0.00066 30.1 3.8 76 57-134 36-126 (318)
77 3t6v_A Laccase; beta barrel, o 43.7 37 0.0013 30.3 5.8 78 57-136 37-132 (495)
78 1kbv_A ANIA, major outer membr 42.7 16 0.00056 30.5 3.2 35 102-136 275-310 (327)
79 3pxl_A Laccase; 4-copper prote 42.1 41 0.0014 30.1 5.8 79 56-136 35-131 (499)
80 3tas_A Small laccase, multi-co 36.7 38 0.0013 28.1 4.5 32 106-137 244-275 (313)
81 2hzs_I RNA polymerase II media 35.3 0.75 2.6E-05 25.2 -4.1 19 56-74 4-22 (27)
82 1v10_A Laccase; multicopper bl 33.2 69 0.0024 28.5 5.9 34 102-135 117-151 (521)
83 2uxt_A Protein SUFI, SUFI; oxi 33.1 26 0.0009 30.7 3.0 74 57-135 52-140 (451)
84 2z0t_A Putative uncharacterize 32.7 21 0.00071 26.0 1.9 11 57-67 32-42 (109)
85 1xne_A Hypothetical protein PF 32.6 15 0.00052 26.8 1.2 13 57-69 33-45 (113)
86 3t9w_A Small laccase, multi-co 32.0 21 0.0007 29.6 2.0 32 106-137 260-291 (299)
87 2l55_A SILB,silver efflux prot 31.3 24 0.00083 24.1 2.0 21 52-72 41-61 (82)
88 2bw4_A Copper-containing nitri 31.2 46 0.0016 27.6 4.1 35 102-136 292-327 (340)
89 2zoo_A Probable nitrite reduct 29.7 35 0.0012 29.4 3.2 35 102-136 265-300 (442)
90 2xu9_A Laccase; oxidoreductase 29.5 83 0.0029 27.2 5.6 77 58-134 50-136 (439)
91 2qcp_X Cation efflux system pr 29.4 34 0.0012 23.1 2.5 16 56-71 51-66 (80)
92 2vb2_X Copper protein, cation 28.4 36 0.0012 23.4 2.5 20 52-71 55-74 (88)
93 3t9w_A Small laccase, multi-co 28.0 2.4E+02 0.0081 23.0 8.0 29 107-135 130-164 (299)
94 2k75_A Uncharacterized protein 27.9 31 0.001 24.3 2.1 29 30-68 41-69 (106)
95 1sdd_B Coagulation factor V; c 27.7 28 0.00097 31.8 2.4 33 102-134 296-328 (647)
96 2l8d_A Lamin-B receptor; DNA b 27.4 78 0.0027 21.1 3.9 46 56-106 7-54 (66)
97 1hfu_A Laccase 1; oxidoreducta 26.8 80 0.0027 27.9 5.1 34 102-135 96-130 (503)
98 2j5w_A Ceruloplasmin, ferroxid 26.7 42 0.0014 32.9 3.4 76 56-135 633-719 (1065)
99 4dny_A Metalloprotease STCE; m 25.8 23 0.00077 26.6 1.1 19 61-79 77-95 (126)
100 2r7e_B Coagulation factor VIII 25.5 35 0.0012 32.4 2.6 77 57-135 201-299 (770)
101 2dv6_A Nitrite reductase; elec 25.4 42 0.0014 28.8 2.9 35 102-136 402-436 (447)
102 3tas_A Small laccase, multi-co 25.3 1.3E+02 0.0043 24.8 5.8 29 107-135 114-148 (313)
103 2r7e_B Coagulation factor VIII 25.2 8.3 0.00028 36.7 -1.8 73 57-133 370-456 (770)
104 2y7l_A NT_ALS9-2, agglutinin-l 25.1 31 0.0011 29.6 2.0 34 57-90 43-83 (312)
105 3rrq_A Protein PD-1, programme 24.8 30 0.001 24.3 1.6 11 124-134 106-116 (129)
106 3kw8_A Laccase, putative coppe 24.7 99 0.0034 24.9 4.9 78 57-136 38-143 (276)
107 1wjj_A Hypothetical protein F2 24.2 24 0.00083 26.7 1.0 34 29-70 64-98 (145)
108 2dig_A Lamin-B receptor; tudor 23.3 1E+02 0.0036 20.5 3.9 46 56-106 10-57 (68)
109 3aw5_A Multicopper oxidase; be 23.1 25 0.00087 30.8 1.1 73 57-136 40-129 (448)
110 1sdd_A Coagulation factor V; c 23.0 1.1E+02 0.0036 25.1 4.9 78 57-135 62-168 (306)
111 2j5w_A Ceruloplasmin, ferroxid 22.1 60 0.0021 31.8 3.6 76 56-136 272-359 (1065)
112 1wid_A DNA-binding protein RAV 22.0 39 0.0013 24.7 1.8 18 54-71 87-104 (130)
113 2kbn_A Conserved protein; nucl 20.6 75 0.0026 22.3 3.0 32 29-68 37-70 (109)
No 1
>1jer_A Cucumber stellacyanin; electron transport, copper, glycoprotein, hydroxylation; 1.60A {Cucumis sativus} SCOP: b.6.1.1
Probab=100.00 E-value=9.1e-43 Score=272.19 Aligned_cols=109 Identities=28% Similarity=0.565 Sum_probs=101.4
Q ss_pred cceEEEEeCCCCCccCCCCCCccchhcccCCceecCCEEEeeeeCCCCeEEEE-ccccCCCCCCCCCcccccCCCcEEEe
Q 030240 27 EARDILVGGKTDSWKIPSSQSDSLNQWAEKTRFQVGDSLVWKYDATRDSVLQV-TKEAYLSCNTSSPVAEYRDGNTKVKL 105 (181)
Q Consensus 27 ~a~~~~VGg~~G~W~~~~~~~~~Y~~WA~~~~f~vGD~LvF~y~~~~HsV~~V-~~~~y~~C~~~~~~~~~s~G~~~v~L 105 (181)
+|++|+|||+.| |+++++ ..+|++||++++|++||+|+|+|++++|+|+|| ++++|+.|+.++++..+++|+++|+|
T Consensus 2 ~a~~~~VGg~~G-W~~~~~-~~~Y~~Wa~~~~F~vGD~LvF~y~~~~HsV~~V~~~~~y~~C~~s~p~~~~~~G~~~v~L 79 (138)
T 1jer_A 2 QSTVHIVGDNTG-WSVPSS-PNFYSQWAAGKTFRVGDSLQFNFPANAHNVHEMETKQSFDACNFVNSDNDVERTSPVIER 79 (138)
T ss_dssp CCCEEETTGGGC-SSCCSS-TTHHHHHHHTCCEETTCEEEECCCTTTCCCEEESCHHHHHHTCCTTSCCCCCCCSCEEEE
T ss_pred CceEEEECCcCc-CcCCCC-ccchhhhhcCCcCcCCCEEEEeecCCCceEEEeCchhhcCccCCCCccccccCCCeEEEe
Confidence 578999999999 999854 356999999999999999999999999999999 99999999999999999999999999
Q ss_pred -cccccEEEEeCCCCCCcCCCeEEEEeecCCCC
Q 030240 106 -NKSGPFYFISGTKGSCEKGQKLIVVVMSSRRR 137 (181)
Q Consensus 106 -~~~G~~YFic~v~~HC~~GmKl~I~V~~~~~~ 137 (181)
+++|++||||++++||++||||+|+|....++
T Consensus 80 ~~~~G~~YFicg~~gHC~~GmKl~I~V~~~~~~ 112 (138)
T 1jer_A 80 LDELGMHYFVCTVGTHCSNGQKLSINVVAANAT 112 (138)
T ss_dssp CCSSEEEEEECCSTTTGGGTCEEEEEEECCC--
T ss_pred ccCCcCEEEEcCCCCccccCCEEEEEEcCCCCC
Confidence 99999999999999999999999999987764
No 2
>1x9u_A Umecyanin; cupredoxin, phytocyanin, copper binding site, beta barrel, electron transport; 1.80A {Armoracia rusticana} PDB: 1x9r_A
Probab=100.00 E-value=3.6e-40 Score=250.63 Aligned_cols=106 Identities=35% Similarity=0.637 Sum_probs=96.5
Q ss_pred eEEEEeCCCCCccCCCCCCccchhcccCCceecCCEEEeeeeCCCCeEEEEccccCCCCCCCCCcccccCCCcEEEeccc
Q 030240 29 RDILVGGKTDSWKIPSSQSDSLNQWAEKTRFQVGDSLVWKYDATRDSVLQVTKEAYLSCNTSSPVAEYRDGNTKVKLNKS 108 (181)
Q Consensus 29 ~~~~VGg~~G~W~~~~~~~~~Y~~WA~~~~f~vGD~LvF~y~~~~HsV~~V~~~~y~~C~~~~~~~~~s~G~~~v~L~~~ 108 (181)
++|+|||+.| |+++. ...+|++||++++|++||+|+|+|.+++|+|+||++++|+.|+.++++..+++|++.|+|+++
T Consensus 2 ~~~~VG~~~G-W~~~~-~~~~Y~~Wa~~~~f~vGD~L~F~y~~~~HsV~~V~~~~y~~C~~~~~~~~~~~G~~~v~l~~~ 79 (116)
T 1x9u_A 2 EDYDVGGDME-WKRPS-DPKFYITWATGKTFRVGDELEFDFAAGMHDVAVVTKDAFDNCKKENPISHMTTPPVKIMLNTT 79 (116)
T ss_dssp CEEETTGGGC-SSCCS-STTHHHHHHTTCCEETTCEEEECCCTTTCCEEEECHHHHHTTCCSSCSEEECSSSEEEECCSC
T ss_pred eEEEECCcCc-CcCCC-CCcchhhccccccCcCCCEEEEEecCCCCeEEEEChhhcCccCCCCCccccCCCCeEEEECCC
Confidence 5799999999 99973 245699999999999999999999999999999999999999999999889999999999999
Q ss_pred ccEEEEeCCCCCCcCCCeEEE-EeecCCC
Q 030240 109 GPFYFISGTKGSCEKGQKLIV-VVMSSRR 136 (181)
Q Consensus 109 G~~YFic~v~~HC~~GmKl~I-~V~~~~~ 136 (181)
|++||||++++||++||||+| +|.++.+
T Consensus 80 G~~yFic~~~~HC~~Gmkl~In~V~~~~~ 108 (116)
T 1x9u_A 80 GPQYYICTVGDHCRVGQKLSINVVGAGGA 108 (116)
T ss_dssp EEEEEECCSTTTTTTTCEEEEEEECC---
T ss_pred CCEEEECCCCCccccCCEEEEEEECCCCC
Confidence 999999999999999999999 7766544
No 3
>1ws8_A Mavicyanin; oxidized form, phytocyanin, cupredoxin, electron transport; 1.60A {Cucurbita pepo} SCOP: b.6.1.1 PDB: 1ws7_A
Probab=100.00 E-value=3.6e-40 Score=248.15 Aligned_cols=106 Identities=38% Similarity=0.714 Sum_probs=98.1
Q ss_pred cceEEEEeCCCCCccCCCCCCccchhcccCCceecCCEEEeeeeCCCCeEEEEccccCCCCCCCCCcccccCCCcEEEec
Q 030240 27 EARDILVGGKTDSWKIPSSQSDSLNQWAEKTRFQVGDSLVWKYDATRDSVLQVTKEAYLSCNTSSPVAEYRDGNTKVKLN 106 (181)
Q Consensus 27 ~a~~~~VGg~~G~W~~~~~~~~~Y~~WA~~~~f~vGD~LvF~y~~~~HsV~~V~~~~y~~C~~~~~~~~~s~G~~~v~L~ 106 (181)
+|++|+|||+.| |+++++ .+|++||++++|++||+|+|+|.+++|+|+||++++|+.|+.++++..+++|++.|+|+
T Consensus 1 ~a~~~~VG~~~G-W~~~~~--~~Y~~Wa~~~~F~vGD~LvF~y~~~~hsV~~V~~~~y~~C~~~~p~~~~~~G~~~v~L~ 77 (109)
T 1ws8_A 1 MATVHKVGDSTG-WTTLVP--YDYAKWASSNKFHVGDSLLFNYNNKFHNVLQVDQEQFKSCNSSSPAASYTSGADSIPLK 77 (109)
T ss_dssp CCCEEETTGGGC-SCSSSC--CCHHHHHHTSCBCTTCEEEEECCTTTCCEEEECHHHHHHTCCSSCSEEECSSEEEEECC
T ss_pred CCcEEEeCCCCC-ccCCCC--cChhHhhcCCcCcCCCEEEEeecCCCceEEEEChHHCCcccCCCcccccCCCCEEEEEC
Confidence 478999999999 999842 34999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccEEEEeCCCCCCcCCCeEEEEeecCC
Q 030240 107 KSGPFYFISGTKGSCEKGQKLIVVVMSSR 135 (181)
Q Consensus 107 ~~G~~YFic~v~~HC~~GmKl~I~V~~~~ 135 (181)
++|++||||++++||++||||+|+|.++.
T Consensus 78 ~~G~~yFic~~~gHC~~GmKl~I~V~~~~ 106 (109)
T 1ws8_A 78 RPGTFYFLCGIPGHCQLGQKVEIKVDPGS 106 (109)
T ss_dssp SSEEEEEECCSTTTTTTTCEEEEEECC--
T ss_pred CCcCEEEECCCCCcccCCCEEEEEEcCCC
Confidence 99999999999999999999999997654
No 4
>2cbp_A Cucumber basic protein; electron transport, phytocyanin, type 1 copper protein; 1.80A {Cucumis sativus} SCOP: b.6.1.1
Probab=100.00 E-value=7.7e-38 Score=230.47 Aligned_cols=96 Identities=30% Similarity=0.688 Sum_probs=91.6
Q ss_pred eEEEEeCCCCCccCCCCCCccchhcccCCceecCCEEEeeeeCCCCeEEEEccccCCCCCCCCCcccccCCCcEEEeccc
Q 030240 29 RDILVGGKTDSWKIPSSQSDSLNQWAEKTRFQVGDSLVWKYDATRDSVLQVTKEAYLSCNTSSPVAEYRDGNTKVKLNKS 108 (181)
Q Consensus 29 ~~~~VGg~~G~W~~~~~~~~~Y~~WA~~~~f~vGD~LvF~y~~~~HsV~~V~~~~y~~C~~~~~~~~~s~G~~~v~L~~~ 108 (181)
++|+|||+.| |++ + |++||++++|++||+|+|+|.+++|+|+||++++|+.|+.++|+..+++|++.|+| ++
T Consensus 1 ~~~~VG~~~G-W~~--~----y~~Wa~~~~f~vGD~L~F~y~~~~hsV~~v~~~~y~~C~~~~~~~~~~~G~~~v~L-~~ 72 (96)
T 2cbp_A 1 AVYVVGGSGG-WTF--N----TESWPKGKRFRAGDILLFNYNPSMHNVVVVNQGGFSTCNTPAGAKVYTSGRDQIKL-PK 72 (96)
T ss_dssp CEEETTGGGC-SCS--S----CTTTTTTCCBCTTCEEEEECCTTTCCEEEECHHHHHHTCCCTTCEEECSSEEEEEC-CS
T ss_pred CEEEECCcCC-Ccc--C----hhhhccCceEcCCCEEEEEecCCCCEEEEECHHHCCccCCCCCcccccCCCeEEEe-cC
Confidence 4799999999 997 3 99999999999999999999999999999999999999999999889999999999 89
Q ss_pred ccEEEEeCCCCCCcCCCeEEEEee
Q 030240 109 GPFYFISGTKGSCEKGQKLIVVVM 132 (181)
Q Consensus 109 G~~YFic~v~~HC~~GmKl~I~V~ 132 (181)
|++||||++++||++|||++|+|+
T Consensus 73 g~~yFic~~~~HC~~Gmkl~I~Vl 96 (96)
T 2cbp_A 73 GQSYFICNFPGHCQSGMKIAVNAL 96 (96)
T ss_dssp EEEEEECCSTTTGGGTCEEEEEEC
T ss_pred CCEEEEcCCCCccccCCEEEEEEC
Confidence 999999999999999999999984
No 5
>1f56_A Plantacyanin; cupredoxin, copper protein, beta barrel, plant protein; 2.05A {Spinacia oleracea} SCOP: b.6.1.1
Probab=100.00 E-value=5e-34 Score=208.29 Aligned_cols=91 Identities=29% Similarity=0.544 Sum_probs=85.7
Q ss_pred eEEEEeCCCCCccCCCCCCccchhcccCCceecCCEEEeeeeCCCCeEEEEccccCCCCCCCCCcccccCCCcEEEeccc
Q 030240 29 RDILVGGKTDSWKIPSSQSDSLNQWAEKTRFQVGDSLVWKYDATRDSVLQVTKEAYLSCNTSSPVAEYRDGNTKVKLNKS 108 (181)
Q Consensus 29 ~~~~VGg~~G~W~~~~~~~~~Y~~WA~~~~f~vGD~LvF~y~~~~HsV~~V~~~~y~~C~~~~~~~~~s~G~~~v~L~~~ 108 (181)
++|+| | |+++ ++||++++|++||+|+|+|.+++|+|+||++++|+.|+.++++..+++|++.|+|+ +
T Consensus 1 ~~y~V----g-W~~~-------~~Wa~~~~f~vGD~L~F~y~~~~hsV~~v~~~~y~~C~~~~~~~~~~~G~~~v~L~-~ 67 (91)
T 1f56_A 1 AVYNI----G-WSFN-------VNGARGKSFRAGDVLVFKYIKGQHNVVAVNGRGYASCSAPRGARTYSSGQDRIKLT-R 67 (91)
T ss_dssp CEEEE----E-CSSS-------CBSCTTCCBCTTCEEEEECCBTTBCEEEECHHHHHTTCCCTTCEEECSSEEEEECC-S
T ss_pred CEEEE----e-CCCC-------CcCcCCccEeCCCEEEEEccCCCCeEEEECHHHcCCcCCCCCcccccCCCcEEEeC-C
Confidence 46899 6 9985 69999999999999999999999999999999999999999998899999999996 8
Q ss_pred ccEEEEeCCCCCCcCCCeEEEEee
Q 030240 109 GPFYFISGTKGSCEKGQKLIVVVM 132 (181)
Q Consensus 109 G~~YFic~v~~HC~~GmKl~I~V~ 132 (181)
|++||||++++||++|||++|+|.
T Consensus 68 g~~yFic~~~~HC~~Gmkl~I~v~ 91 (91)
T 1f56_A 68 GQNYFICSFPGHCGGGMKIAINAK 91 (91)
T ss_dssp EEEEEECCSTTTTTTTCEEEEEEC
T ss_pred CCeEEEcCCCCccccCCEEEEEEC
Confidence 999999999999999999999984
No 6
>1qhq_A Protein (auracyanin); electron transfer, cupredoxin, blue copper protein, azurin-L thermophIle; 1.55A {Chloroflexus aurantiacus} SCOP: b.6.1.1 PDB: 1ov8_A
Probab=99.37 E-value=1.4e-12 Score=99.59 Aligned_cols=97 Identities=12% Similarity=0.188 Sum_probs=66.9
Q ss_pred ccceEEEEeCCCCCccCCCCCCccchhcccCCceecCCEEEeeeeC-----CCCeEEEEccc-cCCC-------------
Q 030240 26 CEARDILVGGKTDSWKIPSSQSDSLNQWAEKTRFQVGDSLVWKYDA-----TRDSVLQVTKE-AYLS------------- 86 (181)
Q Consensus 26 a~a~~~~VGg~~G~W~~~~~~~~~Y~~WA~~~~f~vGD~LvF~y~~-----~~HsV~~V~~~-~y~~------------- 86 (181)
+..+++.|+-..++|.+.++ ..+++.||+++|+|.+ ..|+++..+.. ++..
T Consensus 14 ~~~~~v~V~~~~~~~~F~P~----------~i~v~~G~tV~~~~~N~~~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (140)
T 1qhq_A 14 TPAQTVEVRAAPDALAFAQT----------SLSLPANTVVRLDFVNQNNLGVQHNWVLVNGGDDVAAAVNTAAQNNADAL 83 (140)
T ss_dssp CCSEEEEEEBCSSSSSBSCS----------EEEEETTCEEEEEEEECCSSCCCBCCEEESSSHHHHHHHHHHHHTCGGGT
T ss_pred CCCEEEEEEEeCCCceEeCC----------eEEECCCCEEEEEEECCCCCCCceeEEEeccCcchhhhhhhhhhhccccc
Confidence 44567888764333888766 5689999999999976 47999877321 1111
Q ss_pred -C---CCCC------CcccccCCCcEEEecccccEEEEeCCCCCCcCCCeEEEEee
Q 030240 87 -C---NTSS------PVAEYRDGNTKVKLNKSGPFYFISGTKGSCEKGQKLIVVVM 132 (181)
Q Consensus 87 -C---~~~~------~~~~~s~G~~~v~L~~~G~~YFic~v~~HC~~GmKl~I~V~ 132 (181)
. +..+ .+....++..+|+++++|.|||+|++++||+.|||..|+|.
T Consensus 84 ~~~~~~~~~~~~~t~~l~pG~~~~~~~~~~~~G~y~f~C~~~~H~~~GM~g~i~V~ 139 (140)
T 1qhq_A 84 FVPPPDTPNALAWTAMLNAGESGSVTFRTPAPGTYLYICTFPGHYLAGMKGTLTVT 139 (140)
T ss_dssp TCCCTTCTTEEEECCCBCTTEEEEEEEECCSSEEEEEECCSTTTTTTTCEEEEEEE
T ss_pred ccCccccccccccceeeCCCceeEEEEEeCCCeeEEEEeCCcCHhhcCCEEEEEEc
Confidence 0 0000 11112233346788899999999999999999999999995
No 7
>1bxv_A Plastocyanin; copper protein, electron transfer; 1.80A {Synechococcus elongatus} SCOP: b.6.1.1 PDB: 1bxu_A
Probab=99.26 E-value=7.3e-12 Score=87.94 Aligned_cols=86 Identities=15% Similarity=0.262 Sum_probs=62.0
Q ss_pred EEEEeCCCCCccCCCCCCccchhcccCCceecCCEEEeeeeC-CCCeEEEEccccCCCCCCCCCcccccCC-CcEEEecc
Q 030240 30 DILVGGKTDSWKIPSSQSDSLNQWAEKTRFQVGDSLVWKYDA-TRDSVLQVTKEAYLSCNTSSPVAEYRDG-NTKVKLNK 107 (181)
Q Consensus 30 ~~~VGg~~G~W~~~~~~~~~Y~~WA~~~~f~vGD~LvF~y~~-~~HsV~~V~~~~y~~C~~~~~~~~~s~G-~~~v~L~~ 107 (181)
++.||++.++|.+.|+ ..++++||+|+|++.. ..|+|...+...+. ........| ..++++++
T Consensus 4 ~v~~~~~~~~~~f~P~----------~i~v~~Gd~V~~~n~~~~~H~v~~~~~~~~~-----~~~~~~~~g~~~~~~f~~ 68 (91)
T 1bxv_A 4 AIKMGADNGMLAFEPS----------TIEIQAGDTVQWVNNKLAPHNVVVEGQPELS-----HKDLAFSPGETFEATFSE 68 (91)
T ss_dssp EEEESCTTSCSSEESS----------EEEECTTCEEEEEECSSCCEEEEETTCGGGC-----EEEEECSTTCEEEEECCS
T ss_pred EEEEecCCCccEEeCC----------EEEECCCCEEEEEECCCCCcEEEEeCCCccC-----cccceeCCCCEEEEEeCC
Confidence 4667764333777666 5689999999999874 58999875432221 011123444 35788999
Q ss_pred cccEEEEeCCCCCCcCCCeEEEEee
Q 030240 108 SGPFYFISGTKGSCEKGQKLIVVVM 132 (181)
Q Consensus 108 ~G~~YFic~v~~HC~~GmKl~I~V~ 132 (181)
+|.|+|+|. .||..||+..|.|.
T Consensus 69 ~G~y~~~C~--~H~~~gM~g~i~V~ 91 (91)
T 1bxv_A 69 PGTYTYYCE--PHRGAGMVGKIVVQ 91 (91)
T ss_dssp CEEEEEECT--TTGGGTCEEEEEEC
T ss_pred CEEEEEEeC--CCccCCCEEEEEEC
Confidence 999999999 89999999999984
No 8
>2cal_A Rusticyanin; iron respiratory electron transport chain, blue protein, electron transport, metal- binding, periplasmic; 1.10A {Thiobacillus ferrooxidans} PDB: 1cur_A 1gy2_A 1a3z_A 1e30_A 1gy1_A 1rcy_A 1a8z_A 2cak_A
Probab=99.15 E-value=6.4e-11 Score=92.79 Aligned_cols=76 Identities=18% Similarity=0.268 Sum_probs=58.4
Q ss_pred CCceecCCEEEeeeeCC----CCeEEEE-ccccCCCCCCCCCcc-------cccCCC---c--EEEecccccEEEEeCCC
Q 030240 56 KTRFQVGDSLVWKYDAT----RDSVLQV-TKEAYLSCNTSSPVA-------EYRDGN---T--KVKLNKSGPFYFISGTK 118 (181)
Q Consensus 56 ~~~f~vGD~LvF~y~~~----~HsV~~V-~~~~y~~C~~~~~~~-------~~s~G~---~--~v~L~~~G~~YFic~v~ 118 (181)
..++++||+|+|++.+. .|++..+ ....|+.|.....+. ....|. . +|++ ++|+|||+|+++
T Consensus 62 ~i~V~~GD~V~~~~tN~~~~~~H~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~PG~sgt~t~tft~-~pGtY~y~C~~~ 140 (154)
T 2cal_A 62 TLEIPAGATVDVTFINTNKGFGHSFDITKKGPPYAVMPVIDPIVAGTGFSPVPKDGKFGYTDFTWHP-TAGTYYYVCQIP 140 (154)
T ss_dssp EEEECTTCEEEEEEEECCTTCCCCCEEESCCSCCCSSCCCCSEEEEBCCCCCCBTTBEEEEEEEECC-CSEEEEEECCST
T ss_pred EEEEeCCCEEEEEEEcCCCCeeeEEEEeecCcchhccccccccccccccccccCCCCceEEEEEEEE-CCceEEEECCCC
Confidence 46789999999999763 5999988 445777787654331 112333 3 5678 999999999999
Q ss_pred CCCcCCCeEEEEee
Q 030240 119 GSCEKGQKLIVVVM 132 (181)
Q Consensus 119 ~HC~~GmKl~I~V~ 132 (181)
+||+.|||..|.|.
T Consensus 141 gH~~~GM~G~IiV~ 154 (154)
T 2cal_A 141 GMAATGMFGKIVVK 154 (154)
T ss_dssp TTGGGTCEEEEEEC
T ss_pred CHHHCCCEEEEEEC
Confidence 99999999999883
No 9
>1iuz_A Plastocyanin; electron transport; 1.60A {Ulva pertusa} SCOP: b.6.1.1 PDB: 7pcy_A
Probab=99.10 E-value=9.1e-11 Score=84.26 Aligned_cols=92 Identities=16% Similarity=0.182 Sum_probs=62.5
Q ss_pred eEEEEeCCCCCccCCCCCCccchhcccCCceecCCEEEeeeeC-CCCeEEEEccc---cCCCCCCCCCcccccCCC-cEE
Q 030240 29 RDILVGGKTDSWKIPSSQSDSLNQWAEKTRFQVGDSLVWKYDA-TRDSVLQVTKE---AYLSCNTSSPVAEYRDGN-TKV 103 (181)
Q Consensus 29 ~~~~VGg~~G~W~~~~~~~~~Y~~WA~~~~f~vGD~LvF~y~~-~~HsV~~V~~~---~y~~C~~~~~~~~~s~G~-~~v 103 (181)
.++.+|++.+++.+.|+ ..++++||+|.|.+.. ..|+|...+.. .++.+...........|. .++
T Consensus 2 ~~V~m~~~~~~~~F~P~----------~i~v~~GdtV~~~n~~~~~H~v~~~~~~~p~g~~~~~~~~~~~~~~~g~~~~~ 71 (98)
T 1iuz_A 2 QIVKLGGDDGSLAFVPS----------KISVAAGEAIEFVNNAGFPHNIVFDEDAVPAGVDADAISYDDYLNSKGETVVR 71 (98)
T ss_dssp EEEEESCTTSCCSEESS----------EEEECTTCEEEEEECSSCCEEEEECTTSSCTTCCHHHHCEEEEECSTTCEEEE
T ss_pred EEEEEecCCCCcEEeCC----------EEEECCCCEEEEEECCCCCEEEEEeCCCCccccccccccccccccCCCCEEEE
Confidence 46677765443777666 5689999999999875 48999765311 112111110001234454 378
Q ss_pred EecccccEEEEeCCCCCCcCCCeEEEEee
Q 030240 104 KLNKSGPFYFISGTKGSCEKGQKLIVVVM 132 (181)
Q Consensus 104 ~L~~~G~~YFic~v~~HC~~GmKl~I~V~ 132 (181)
+++++|.|+|+|.. ||+.||+..|.|.
T Consensus 72 tf~~~G~y~y~C~~--H~~~gM~G~I~V~ 98 (98)
T 1iuz_A 72 KLSTPGVYGVYCEP--HAGAGMKMTITVQ 98 (98)
T ss_dssp ECCSCEEEEEECTT--TGGGTCEEEEEEC
T ss_pred EcCCCEEEEEEchh--hccCCCEEEEEEC
Confidence 89999999999995 9999999999884
No 10
>2aan_A Auracyanin A; cupredoxin fold, electron transport; 1.85A {Chloroflexus aurantiacus}
Probab=99.04 E-value=1.2e-09 Score=83.06 Aligned_cols=96 Identities=16% Similarity=0.269 Sum_probs=65.3
Q ss_pred ccceEEEEeCCCCCccCCCCCCccchhcccCCceecCCEEEeeeeCC----CCeEEEEccc------------------c
Q 030240 26 CEARDILVGGKTDSWKIPSSQSDSLNQWAEKTRFQVGDSLVWKYDAT----RDSVLQVTKE------------------A 83 (181)
Q Consensus 26 a~a~~~~VGg~~G~W~~~~~~~~~Y~~WA~~~~f~vGD~LvF~y~~~----~HsV~~V~~~------------------~ 83 (181)
++..++.||....++.+.++ ..+++.||+++|+|.+. .|++...... +
T Consensus 16 ~~~~~V~v~~~~~~~~F~p~----------~i~v~~G~~V~~~~~N~~~~~~H~~~i~~~~~~~~~~~~~~~~~~g~~~~ 85 (139)
T 2aan_A 16 SGPVTIEIGSKGEELAFDKT----------ELTVSAGQTVTIRFKNNSAVQQHNWILVKGGEAEAANIANAGLSAGPAAN 85 (139)
T ss_dssp -CCEEEEEEBCTTSSSBSCS----------EEEECTTCEEEEEEECCCSSCCBCCEEESSCHHHHHHHHHHHHHHCGGGT
T ss_pred CcCEEEEEEecCCccEEcCC----------eEEECCCCEEEEEEEeCCCCCCeeEEEeccccccchhhhhhhhccccccc
Confidence 34456778533222777766 56889999999998754 7999887432 4
Q ss_pred CCCCCCCCCc---ccccCCCc-EE--EecccccEEEEeCCCCCCcCCCeEEEEee
Q 030240 84 YLSCNTSSPV---AEYRDGNT-KV--KLNKSGPFYFISGTKGSCEKGQKLIVVVM 132 (181)
Q Consensus 84 y~~C~~~~~~---~~~s~G~~-~v--~L~~~G~~YFic~v~~HC~~GmKl~I~V~ 132 (181)
|..|+..+.+ .....|.+ ++ +++++|.|+|+|.+++||+ ||+..|.|.
T Consensus 86 ~~p~~~~~~~~~t~~l~pGet~~v~f~~~~pG~y~f~C~~~~H~~-GM~G~i~V~ 139 (139)
T 2aan_A 86 YLPADKSNIIAESPLANGNETVEVTFTAPAAGTYLYICTVPGHYP-LMQGKLVVN 139 (139)
T ss_dssp TCCSCCTTEEEECCCBCTTCEEEEEEECCSSEEEEEECCSTTTTT-TSEEEEEEC
T ss_pred ccCcccccccccccccCCCCEEEEEEECCCCeEEEEEcCCCChHH-cCEEEEEEC
Confidence 5556532211 11344432 44 4458999999999999999 999999883
No 11
>1plc_A Plastocyanin; electron transport; 1.33A {Populus nigra} SCOP: b.6.1.1 PDB: 1pnc_A 1pnd_A 1tkw_A* 2pcy_A 3pcy_A 4pcy_A 5pcy_A 6pcy_A 1jxg_A 1ag6_A 1ylb_B 2pcf_A* 1oow_A 1tef_A 9pcy_A 1teg_A 1byo_A
Probab=99.04 E-value=6e-10 Score=79.72 Aligned_cols=91 Identities=20% Similarity=0.242 Sum_probs=61.7
Q ss_pred EEEEeCCCCCccCCCCCCccchhcccCCceecCCEEEeeeeCC-CCeEEEEccc---cCCCCCCC--CCcccccCCC-cE
Q 030240 30 DILVGGKTDSWKIPSSQSDSLNQWAEKTRFQVGDSLVWKYDAT-RDSVLQVTKE---AYLSCNTS--SPVAEYRDGN-TK 102 (181)
Q Consensus 30 ~~~VGg~~G~W~~~~~~~~~Y~~WA~~~~f~vGD~LvF~y~~~-~HsV~~V~~~---~y~~C~~~--~~~~~~s~G~-~~ 102 (181)
++.+|++.|++.+.|+ ..++++||+|+|++..+ .|++...+.. ..+.+... ........|. .+
T Consensus 2 ~v~m~~~~~~~~F~P~----------~i~v~~G~tV~~~n~~~~~H~v~~~~~~~p~~~~~~~~~~~~~~~~~~~G~~~~ 71 (99)
T 1plc_A 2 DVLLGADDGSLAFVPS----------EFSISPGEKIVFKNNAGFPHNIVFDEDSIPSGVDASKISMSEEDLLNAKGETFE 71 (99)
T ss_dssp EEEESCTTCCSCEESS----------EEEECTTCEEEEEECSSCCBCCEECTTSSCTTCCHHHHCCCTTCCBCSTTCEEE
T ss_pred EEEEecCCCcceEeCC----------EEEECCCCEEEEEECCCCceEEEEeCCCCcccccccccccccCccccCCCCEEE
Confidence 4667765444776665 56899999999988753 7999865421 11111100 0001123443 47
Q ss_pred EEecccccEEEEeCCCCCCcCCCeEEEEee
Q 030240 103 VKLNKSGPFYFISGTKGSCEKGQKLIVVVM 132 (181)
Q Consensus 103 v~L~~~G~~YFic~v~~HC~~GmKl~I~V~ 132 (181)
++++++|+|+|+|. .||+.||+..|.|.
T Consensus 72 ~tf~~~G~y~~~C~--~H~~~gM~G~i~V~ 99 (99)
T 1plc_A 72 VALSNKGEYSFYCS--PHQGAGMVGKVTVN 99 (99)
T ss_dssp EECCSCEEEEEECG--GGTTTTCEEEEEEC
T ss_pred EEECCCceEEEEcC--CCcccCCEEEEEEC
Confidence 89999999999999 89999999999983
No 12
>1pmy_A Pseudoazurin; electron transfer(cuproprotein); 1.50A {Methylobacterium extorquens} SCOP: b.6.1.1
Probab=99.01 E-value=8.8e-10 Score=83.45 Aligned_cols=82 Identities=20% Similarity=0.207 Sum_probs=59.1
Q ss_pred eCCCCCccCCCCCCccchhcccCCceecCCEEEeeeeCCCCeEEEEccccCCCCCCCCCcc-cccCCC-cEEEecccccE
Q 030240 34 GGKTDSWKIPSSQSDSLNQWAEKTRFQVGDSLVWKYDATRDSVLQVTKEAYLSCNTSSPVA-EYRDGN-TKVKLNKSGPF 111 (181)
Q Consensus 34 Gg~~G~W~~~~~~~~~Y~~WA~~~~f~vGD~LvF~y~~~~HsV~~V~~~~y~~C~~~~~~~-~~s~G~-~~v~L~~~G~~ 111 (181)
|++.+ +.+.|+ ..++++||+|+|.+....|+|+... .|.+.+... ....|. .+++++++|.|
T Consensus 11 g~~g~-~~F~P~----------~i~V~~GdtV~f~n~~~~H~v~~~~-----~~~p~~~~~~~~~pG~t~~~tF~~~G~y 74 (123)
T 1pmy_A 11 GPGGM-MVFDPA----------LVRLKPGDSIKFLPTDKGHNVETIK-----GMAPDGADYVKTTVGQEAVVKFDKEGVY 74 (123)
T ss_dssp ETTEE-EEEESS----------EEEECTTCEEEEECSSSSCCCEECT-----TSSCTTCCCCBCCTTSCEEEECCSCEEE
T ss_pred cCCCC-ceEeCC----------EEEECCCCEEEEEECCCCcEEEEec-----ccCCCCccceecCCCCEEEEEeCCCeEE
Confidence 44333 777666 5689999999999987789998642 232222111 112233 47899999999
Q ss_pred EEEeCCCCCCcCCCeEEEEeec
Q 030240 112 YFISGTKGSCEKGQKLIVVVMS 133 (181)
Q Consensus 112 YFic~v~~HC~~GmKl~I~V~~ 133 (181)
+|+|+ .||..||+..|+|..
T Consensus 75 ~y~C~--~H~~~gM~G~I~V~~ 94 (123)
T 1pmy_A 75 GFKCA--PHYMMGMVALVVVGD 94 (123)
T ss_dssp EEECS--TTTTTTCEEEEEESS
T ss_pred EEEeC--CccccCCEEEEEEcC
Confidence 99998 599999999999975
No 13
>1paz_A Pseudoazurin precursor; electron transfer(cuproprotein); 1.55A {Alcaligenes faecalis} SCOP: b.6.1.1 PDB: 1pza_A 1pzb_A 1pzc_A 2p80_D 3nyk_A 3paz_A 8paz_A 4paz_A 5paz_A 6paz_A 7paz_A 1py0_A*
Probab=98.99 E-value=1e-09 Score=83.10 Aligned_cols=82 Identities=9% Similarity=0.109 Sum_probs=58.8
Q ss_pred eCCCCCccCCCCCCccchhcccCCceecCCEEEeeeeCCCCeEEEEccccCCCCCCCCCcc-cccCCC-cEEEecccccE
Q 030240 34 GGKTDSWKIPSSQSDSLNQWAEKTRFQVGDSLVWKYDATRDSVLQVTKEAYLSCNTSSPVA-EYRDGN-TKVKLNKSGPF 111 (181)
Q Consensus 34 Gg~~G~W~~~~~~~~~Y~~WA~~~~f~vGD~LvF~y~~~~HsV~~V~~~~y~~C~~~~~~~-~~s~G~-~~v~L~~~G~~ 111 (181)
|++.+ +.+.|+ ..++++||+|+|.+....|+|+.. +.|...+... ....|. .+++++++|.|
T Consensus 11 g~~g~-~~F~P~----------~i~V~~GdtV~f~~~~~~H~v~~~-----~~~~p~~~~~~~~~pG~t~~~tF~~~G~y 74 (123)
T 1paz_A 11 GAEGA-MVFEPA----------YIKANPGDTVTFIPVDKGHNVESI-----KDMIPEGAEKFKSKINENYVLTVTQPGAY 74 (123)
T ss_dssp ETTEE-EEEESS----------EEEECTTCEEEEEESSSSCCCEEC-----TTCSCTTCCCCBCCTTCCEEEECCSCEEE
T ss_pred cCCCC-ceEeCC----------EEEECCCCEEEEEECCCCeEEEEe-----cccCCCCccceecCCCCEEEEEeCCCEEE
Confidence 54333 777666 568999999999998778999763 1232222111 111233 47899999999
Q ss_pred EEEeCCCCCCcCCCeEEEEeec
Q 030240 112 YFISGTKGSCEKGQKLIVVVMS 133 (181)
Q Consensus 112 YFic~v~~HC~~GmKl~I~V~~ 133 (181)
+|+|+ .||+.||+..|+|..
T Consensus 75 ~y~C~--~H~~~gM~G~I~V~~ 94 (123)
T 1paz_A 75 LVKCT--PHYAMGMIALIAVGD 94 (123)
T ss_dssp EEECT--TTGGGTCEEEEEESS
T ss_pred EEEeC--CcccCCCEEEEEEcC
Confidence 99998 599999999999965
No 14
>2gim_A Plastocyanin; beta sheet, Cu, helix, electron transport; 1.60A {Anabaena variabilis} SCOP: b.6.1.1 PDB: 1fa4_A 1nin_A 1tu2_A* 2cj3_A
Probab=98.98 E-value=2.1e-09 Score=77.45 Aligned_cols=86 Identities=14% Similarity=0.183 Sum_probs=60.2
Q ss_pred EEEEeCCCCCccCCCCCCccchhcccCCceecCCEEEeeeeC-CCCeEEEEccccCCCCCCC----------CCcccccC
Q 030240 30 DILVGGKTDSWKIPSSQSDSLNQWAEKTRFQVGDSLVWKYDA-TRDSVLQVTKEAYLSCNTS----------SPVAEYRD 98 (181)
Q Consensus 30 ~~~VGg~~G~W~~~~~~~~~Y~~WA~~~~f~vGD~LvF~y~~-~~HsV~~V~~~~y~~C~~~----------~~~~~~s~ 98 (181)
++.||.+.+++.+.|+ ..++++||+|+|.+.. ..|++...+. |... ........
T Consensus 5 ~V~~~~~~~~~~F~P~----------~i~v~~Gd~V~~~n~~~~~H~~~~~~~-----~~~~~~g~~~~~~~~~~~~~~p 69 (106)
T 2gim_A 5 TVKLGSDKGLLVFEPA----------KLTIKPGDTVEFLNNKVPPHNVVFDAA-----LNPAKSADLAKSLSHKQLLMSP 69 (106)
T ss_dssp EEEESCTTCCSSEESS----------EEEECTTCEEEEEECSSSCCCBEECSS-----SSTTCCHHHHHHHCBCSCCCST
T ss_pred EEEEEecCCcceEcCC----------EEEECCCCEEEEEECCCCCceEEEeCC-----CCcccccccchhccccceeeCC
Confidence 5667654233887666 5688999999999764 4799976432 2211 00111233
Q ss_pred CC-cEEEe---cccccEEEEeCCCCCCcCCCeEEEEee
Q 030240 99 GN-TKVKL---NKSGPFYFISGTKGSCEKGQKLIVVVM 132 (181)
Q Consensus 99 G~-~~v~L---~~~G~~YFic~v~~HC~~GmKl~I~V~ 132 (181)
|. .++++ +++|.|+|+|. .||+.||+..|.|.
T Consensus 70 G~~~~~~f~~~~~~G~y~y~C~--~H~~~GM~G~i~V~ 105 (106)
T 2gim_A 70 GQSTSTTFPADAPAGEYTFYCE--PHRGAGMVGKITVA 105 (106)
T ss_dssp TCEEEEECCTTCCSEEEEEECT--TTGGGTCEEEEEEC
T ss_pred CCEEEEEEecCCCCceEEEEeC--ChhhcCcEEEEEEc
Confidence 43 47788 89999999999 89999999999985
No 15
>2plt_A Plastocyanin; electron transport; 1.50A {Chlamydomonas reinhardtii} SCOP: b.6.1.1
Probab=98.98 E-value=4.3e-10 Score=80.07 Aligned_cols=92 Identities=12% Similarity=0.149 Sum_probs=62.0
Q ss_pred eEEEEeCCCCCccCCCCCCccchhcccCCceecCCEEEeeeeCC-CCeEEEEccc---cCCCCCCCCCcccccCCC-cEE
Q 030240 29 RDILVGGKTDSWKIPSSQSDSLNQWAEKTRFQVGDSLVWKYDAT-RDSVLQVTKE---AYLSCNTSSPVAEYRDGN-TKV 103 (181)
Q Consensus 29 ~~~~VGg~~G~W~~~~~~~~~Y~~WA~~~~f~vGD~LvF~y~~~-~HsV~~V~~~---~y~~C~~~~~~~~~s~G~-~~v 103 (181)
.++.+|++.|++.+.|+ ..++++||+|+|++..+ .|++...+.. +++.+...........|. .++
T Consensus 2 ~~V~m~~~~~~~~F~P~----------~i~v~~G~~V~~~n~~~~~H~~~~~~~~~p~~~~~~~~~~~~~~~~pG~~~~~ 71 (98)
T 2plt_A 2 ATVKLGADSGALEFVPK----------TLTIKSGETVNFVNNAGFPHNIVFDEDAIPSGVNADAISRDDYLNAPGETYSV 71 (98)
T ss_dssp EEEEESCTTCCSSEESS----------EEEECTTCEEEEEECSSCCEEEEECGGGSCTTCCHHHHCEEEEECSTTCEEEE
T ss_pred EEEEEecCCCCceEeCC----------EEEECCCCEEEEEECCCCceEEEEeCCCCCCccccccccccceecCCCCEEEE
Confidence 46777755444777665 46889999999988753 7999765321 111111000011234444 478
Q ss_pred EecccccEEEEeCCCCCCcCCCeEEEEee
Q 030240 104 KLNKSGPFYFISGTKGSCEKGQKLIVVVM 132 (181)
Q Consensus 104 ~L~~~G~~YFic~v~~HC~~GmKl~I~V~ 132 (181)
+++++|+|.|+|. .||+.||+..|.|.
T Consensus 72 tf~~~G~y~y~C~--~H~~~gM~G~i~V~ 98 (98)
T 2plt_A 72 KLTAAGEYGYYCE--PHQGAGMVGKIIVQ 98 (98)
T ss_dssp ECCSCEEEEEECG--GGGGGTCEEEEEEC
T ss_pred EeCCCeEEEEEcC--CccccCCeEEEEEC
Confidence 8999999999999 79999999999883
No 16
>3erx_A Pseudoazurin; copper protein, high-resolution, E transport, metal-binding, transport; 1.25A {Paracoccus pantotrophus} SCOP: b.6.1.1 PDB: 1adw_A
Probab=98.98 E-value=8.7e-10 Score=83.66 Aligned_cols=85 Identities=11% Similarity=0.109 Sum_probs=61.2
Q ss_pred EEEe--CCCCCccCCCCCCccchhcccCCceecCCEEEeeeeCCCCeEEEEccccCCCCCCCCCcccc--cCC-CcEEEe
Q 030240 31 ILVG--GKTDSWKIPSSQSDSLNQWAEKTRFQVGDSLVWKYDATRDSVLQVTKEAYLSCNTSSPVAEY--RDG-NTKVKL 105 (181)
Q Consensus 31 ~~VG--g~~G~W~~~~~~~~~Y~~WA~~~~f~vGD~LvF~y~~~~HsV~~V~~~~y~~C~~~~~~~~~--s~G-~~~v~L 105 (181)
+.++ |+.|...+.|+ ..++++||+|+|.+....|+|...+. |.+.+.. .+ ..| ..++++
T Consensus 5 V~m~~~g~~G~~~F~P~----------~i~V~~GdtV~f~~~~~~H~v~~~~~-----~~P~g~~-~f~~~pg~t~s~TF 68 (123)
T 3erx_A 5 VHMLNKGESGAMVFEPA----------FVRAEPGDVINFVPTDKSHNVEAIKE-----ILPEGVE-SFKSKINESYTLTV 68 (123)
T ss_dssp EEEEEEETTEEEEEESS----------EEEECTTEEEEEEESSTTCCCEECTT-----SSCTTCC-CCBCCTTCCEEEEE
T ss_pred EEEEecCCCCcEeEeCC----------EEEECCCCEEEEEECCCCceEEEcCC-----cCCCCcc-ceecCCCCEEEEEe
Confidence 4444 33443777666 56899999999999877899976421 2222211 11 223 358899
Q ss_pred cccccEEEEeCCCCCCcCCCeEEEEeec
Q 030240 106 NKSGPFYFISGTKGSCEKGQKLIVVVMS 133 (181)
Q Consensus 106 ~~~G~~YFic~v~~HC~~GmKl~I~V~~ 133 (181)
+++|.|+|+|. .||..||+..|.|..
T Consensus 69 ~~pG~y~y~C~--~H~~~GM~G~I~V~~ 94 (123)
T 3erx_A 69 TEPGLYGVKCT--PHFGMGMVGLVQVGD 94 (123)
T ss_dssp CSCEEEEEECG--GGTTTTCEEEEEESS
T ss_pred CCCeEEEEEeC--CCCcCCcEEEEEECC
Confidence 99999999999 799999999999975
No 17
>1kdj_A Plastocyanin; electron transfer, photosystem, PAI-PAI stacking; 1.70A {Adiantum capillus-veneris} SCOP: b.6.1.1 PDB: 1kdi_A 2bz7_A 2bzc_A
Probab=98.97 E-value=1.3e-09 Score=78.23 Aligned_cols=91 Identities=14% Similarity=0.135 Sum_probs=61.2
Q ss_pred EEEEeCCCCCccCCCCCCccchhcccCCceecCCEEEeeeeC-CCCeEEEEccccCC----CCC----CCCCcccccCCC
Q 030240 30 DILVGGKTDSWKIPSSQSDSLNQWAEKTRFQVGDSLVWKYDA-TRDSVLQVTKEAYL----SCN----TSSPVAEYRDGN 100 (181)
Q Consensus 30 ~~~VGg~~G~W~~~~~~~~~Y~~WA~~~~f~vGD~LvF~y~~-~~HsV~~V~~~~y~----~C~----~~~~~~~~s~G~ 100 (181)
++.||.+.+++.+.|+ ..++++||+++|.+.. ..|++...+.+.++ .|+ ..........|.
T Consensus 2 ~V~~g~~~~~~~F~P~----------~i~v~~G~tV~~~n~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pG~ 71 (102)
T 1kdj_A 2 KVEVGDEVGNFKFYPD----------SITVSAGEAVEFTLVGETGHNIVFDIPAGAPGTVASELKAASMDENDLLSEDEP 71 (102)
T ss_dssp EEEESCTTCCCCEESS----------EEEECTTCCEEEEECSSSCBCCEECCCTTCCHHHHHHHHHTSCCTTCCBBTTBC
T ss_pred EEEEecCCCccEEeCC----------EEEECCCCEEEEEECCCCCeEEEEeCcccccccccchhhcccccccceecCCCC
Confidence 4667765433676665 5689999999999764 47999865322221 111 000011123443
Q ss_pred -cEEEecccccEEEEeCCCCCCcCCCeEEEEee
Q 030240 101 -TKVKLNKSGPFYFISGTKGSCEKGQKLIVVVM 132 (181)
Q Consensus 101 -~~v~L~~~G~~YFic~v~~HC~~GmKl~I~V~ 132 (181)
.+++++++|.|+|+|. .||+.||+..|.|.
T Consensus 72 ~~~~tf~~~G~y~y~C~--~H~~~gM~G~i~V~ 102 (102)
T 1kdj_A 72 SFKAKVSTPGTYTFYCT--PHKSANMKGTLTVK 102 (102)
T ss_dssp EEEECCCSCEEEEEECS--TTGGGTCEEEEEEC
T ss_pred EEEEEeCCCeEEEEEeC--CCcccCCeEEEEEC
Confidence 4788899999999999 99999999999883
No 18
>1byp_A Protein (plastocyanin); electron transfer, photosynthesis, acidic patch, double mutant, electron transport; 1.75A {Silene latifolia subsp} SCOP: b.6.1.1 PDB: 1pla_A 1plb_A
Probab=98.92 E-value=2.4e-09 Score=76.38 Aligned_cols=91 Identities=20% Similarity=0.222 Sum_probs=61.0
Q ss_pred EEEEeCCCCCccCCCCCCccchhcccCCceecCCEEEeeeeCC-CCeEEEEccc---cCCCCCCC--CCcccccCCC-cE
Q 030240 30 DILVGGKTDSWKIPSSQSDSLNQWAEKTRFQVGDSLVWKYDAT-RDSVLQVTKE---AYLSCNTS--SPVAEYRDGN-TK 102 (181)
Q Consensus 30 ~~~VGg~~G~W~~~~~~~~~Y~~WA~~~~f~vGD~LvF~y~~~-~HsV~~V~~~---~y~~C~~~--~~~~~~s~G~-~~ 102 (181)
++.||++.++..+.|+ ..++++||+|+|++... .|++...+.. .++.+... ........|. .+
T Consensus 2 ~V~~~~~~~~~~F~P~----------~i~v~~G~tV~~~n~~~~~H~~~~~~~~~p~g~~~~~~~~~~~~~~~~~G~~~~ 71 (99)
T 1byp_A 2 EVLLGSSDGGLAFVPS----------DLSIASGEKITFKNNAGFPHNDLFDKKEVPAGVDVTKISMPEEDLLNAPGEEYS 71 (99)
T ss_dssp EEEESCTTSCCSEESS----------EEEECTTEEEEEEECSSCCBCCEECTTSSCTTCCHHHHSCCTTCCBCSTTCEEE
T ss_pred EEEEecCCCcceEeCC----------EEEECCCCEEEEEECCCCcceEEEeCCCCccccccccccccccceeeCCCCEEE
Confidence 4667755443776665 45889999999988753 7998765321 11211100 0001123443 47
Q ss_pred EEecccccEEEEeCCCCCCcCCCeEEEEee
Q 030240 103 VKLNKSGPFYFISGTKGSCEKGQKLIVVVM 132 (181)
Q Consensus 103 v~L~~~G~~YFic~v~~HC~~GmKl~I~V~ 132 (181)
++++++|.|.|+|. .||+.||+..|.|.
T Consensus 72 ~~f~~~G~y~~~C~--~H~~~gM~G~i~V~ 99 (99)
T 1byp_A 72 VTLTEKGTYKFYCA--PHAGAGMVGKVTVN 99 (99)
T ss_dssp EEECSCEEEEEECG--GGTTTTCEEEEEEC
T ss_pred EEeCCCcEEEEEcC--CccccCCEEEEEEC
Confidence 88999999999999 89999999999883
No 19
>1b3i_A PETE protein, protein (plastocyanin); electron transport, type I copper protein, photosynthesis; NMR {Prochlorothrix hollandica} SCOP: b.6.1.1 PDB: 2b3i_A 2jxm_A*
Probab=98.91 E-value=4.4e-09 Score=74.73 Aligned_cols=89 Identities=15% Similarity=0.130 Sum_probs=60.5
Q ss_pred EEEEeCCCCCccCCCCCCccchhcccCCceecCCEEEeeeeC-CCCeEEEEcccc---CCCCCCCCCcccccCC-CcEEE
Q 030240 30 DILVGGKTDSWKIPSSQSDSLNQWAEKTRFQVGDSLVWKYDA-TRDSVLQVTKEA---YLSCNTSSPVAEYRDG-NTKVK 104 (181)
Q Consensus 30 ~~~VGg~~G~W~~~~~~~~~Y~~WA~~~~f~vGD~LvF~y~~-~~HsV~~V~~~~---y~~C~~~~~~~~~s~G-~~~v~ 104 (181)
++.+|++.+++.+.|+ ..++++||+|+|.+.. ..|++...+... .+.+..... ....| ..+++
T Consensus 4 ~V~~~~~~~~~~F~P~----------~i~v~~G~~V~~~n~~~~~H~~~~~~~~~~~~~~~~~~~~~--~~~~g~~~~~t 71 (97)
T 1b3i_A 4 QIKMGTDKYAPLYEPK----------ALSISAGDTVEFVMNKVGPHNVIFDKVPAGESAPALSNTKL--AIAPGSFYSVT 71 (97)
T ss_dssp EEEEEETTTEEEEESS----------EEEECTTCEEEEEECSSCCCCBEEEECCTTSCHHHHCBCCC--CCSCSCCEEEE
T ss_pred EEEEeccCCccEEeCC----------EEEECCCCEEEEEECCCCCeEEEEeCCCCccccccccccce--ecCCCCEEEEE
Confidence 5667754333777665 5689999999999865 379997753221 000111111 12333 35788
Q ss_pred ecccccEEEEeCCCCCCcCCCeEEEEee
Q 030240 105 LNKSGPFYFISGTKGSCEKGQKLIVVVM 132 (181)
Q Consensus 105 L~~~G~~YFic~v~~HC~~GmKl~I~V~ 132 (181)
++++|.|+|+|. .||+.||+..|.|.
T Consensus 72 f~~~G~y~y~C~--~H~~~gM~G~i~V~ 97 (97)
T 1b3i_A 72 LGTPGTYSFYCT--PHRGAGMVGTITVE 97 (97)
T ss_dssp CCSCSEEEEECS--STTTTTCEEEEEEC
T ss_pred eCCCeEEEEEcc--ChhhcCCEEEEEEC
Confidence 999999999999 89999999999883
No 20
>3tu6_A Pseudoazurin (blue copper protein); cupredoxins, beta barrel, electron transfer, redox, electron transport; 2.00A {Sinorhizobium meliloti}
Probab=98.87 E-value=4.5e-09 Score=80.15 Aligned_cols=84 Identities=13% Similarity=0.135 Sum_probs=59.8
Q ss_pred eCCCCCccCCCCCCccchhcccCCceecCCEEEeeeeCCCCeEEEEccccCCCCCCCCCcc-cccCC-CcEEEecccccE
Q 030240 34 GGKTDSWKIPSSQSDSLNQWAEKTRFQVGDSLVWKYDATRDSVLQVTKEAYLSCNTSSPVA-EYRDG-NTKVKLNKSGPF 111 (181)
Q Consensus 34 Gg~~G~W~~~~~~~~~Y~~WA~~~~f~vGD~LvF~y~~~~HsV~~V~~~~y~~C~~~~~~~-~~s~G-~~~v~L~~~G~~ 111 (181)
|.+.++..+.|+ ..++++||+|+|.+....|+|...+. +.+..... ....| ..+++++++|.|
T Consensus 12 g~~g~~~~F~P~----------~i~V~~GDtVtf~n~~~~H~v~~~~~-----~~P~g~~~f~s~pGet~s~TF~~pG~y 76 (127)
T 3tu6_A 12 AADGRVMAFEPA----------VIRAQPGDTVTFVAKDKGHNSALMKG-----GAPEGAETWKGKINEEITVTLSKPGVY 76 (127)
T ss_dssp CTTSCEEEEESS----------EEEECTTCEEEEECSSSSCCCEECTT-----CSCTTCCCCBCCTTCCCEEECCSCEEE
T ss_pred CCCCcccEEeCC----------EEEECCCCEEEEEECCCCceEEEccC-----cCCCCccceecCCCCEEEEEeCCCeEE
Confidence 543312677666 56899999999999877899976432 21211110 11223 358999999999
Q ss_pred EEEeCCCCCCcCCCeEEEEeecC
Q 030240 112 YFISGTKGSCEKGQKLIVVVMSS 134 (181)
Q Consensus 112 YFic~v~~HC~~GmKl~I~V~~~ 134 (181)
+|+|. .||..||+..|.|..+
T Consensus 77 ~y~C~--~H~~~GM~G~I~V~~~ 97 (127)
T 3tu6_A 77 MYQCA--PHVGMGMIGAIVVGEP 97 (127)
T ss_dssp EEECT--TTGGGTCEEEEEESSC
T ss_pred EEEeC--CCCcCCcEEEEEECcC
Confidence 99999 6999999999999763
No 21
>3ef4_A Pseudoazurin, blue copper protein; electron transfer, electron transport; HET: PO4; 1.18A {Hyphomicrobium denitrificans} SCOP: b.6.1.0
Probab=98.86 E-value=7.6e-09 Score=78.74 Aligned_cols=83 Identities=10% Similarity=0.087 Sum_probs=61.1
Q ss_pred eCCCC-CccCCCCCCccchhcccCCceecCCEEEeeeeCCCCeEEEEccccCCCCCCCCCcc-cccCCC-cEEEeccccc
Q 030240 34 GGKTD-SWKIPSSQSDSLNQWAEKTRFQVGDSLVWKYDATRDSVLQVTKEAYLSCNTSSPVA-EYRDGN-TKVKLNKSGP 110 (181)
Q Consensus 34 Gg~~G-~W~~~~~~~~~Y~~WA~~~~f~vGD~LvF~y~~~~HsV~~V~~~~y~~C~~~~~~~-~~s~G~-~~v~L~~~G~ 110 (181)
+|+.| ++.+.|+ ..++++||+|+|.+....|+|...+ .+.+.+... ....|. .+++++++|.
T Consensus 10 ~g~~G~~~~F~P~----------~i~V~~GDTV~f~n~~~~Hnv~~~~-----~~~p~g~~~~~~~pg~t~s~TF~~~G~ 74 (124)
T 3ef4_A 10 KDDAGNTMVFQPG----------FVKVEAGDTVKFVPTDKSHNAESVR-----EVWPEGVAPVKGGFSKEVVFNAEKEGL 74 (124)
T ss_dssp ECTTSCEEEEESS----------EEEECTTCEEEEECSSSSCCCEECT-----TTSCTTSCCCBCCTTCCEEEECCSSEE
T ss_pred cCCCCceeEEeCC----------EEEECCCCEEEEEECCCCccEEEeC-----CcCCCCccccccCCCCEEEEEeCCCeE
Confidence 44444 4888776 5689999999999987899997642 122222111 112333 5889999999
Q ss_pred EEEEeCCCCCCcCCCeEEEEeec
Q 030240 111 FYFISGTKGSCEKGQKLIVVVMS 133 (181)
Q Consensus 111 ~YFic~v~~HC~~GmKl~I~V~~ 133 (181)
|.|+|. .||..||+..|+|..
T Consensus 75 y~Y~C~--~H~~~GM~G~I~V~~ 95 (124)
T 3ef4_A 75 YVLKCA--PHYGMGMVVLVQVGK 95 (124)
T ss_dssp EEEECT--TTGGGTCEEEEEESS
T ss_pred EEEEcC--CCCcCCCEEEEEECC
Confidence 999998 799999999999976
No 22
>1pcs_A Plastocyanin; electron transport; 2.15A {Synechocystis SP} SCOP: b.6.1.1 PDB: 1m9w_A 1j5c_A 1j5d_A 1jxd_A 1jxf_A
Probab=98.76 E-value=5.5e-09 Score=74.37 Aligned_cols=92 Identities=12% Similarity=0.210 Sum_probs=59.8
Q ss_pred eEEEEeCCCCCccCCCCCCccchhcccCCceecCCEEEeeeeC-CCCeEEEEcccc--CCCCCCCCCcccccCCC-cEEE
Q 030240 29 RDILVGGKTDSWKIPSSQSDSLNQWAEKTRFQVGDSLVWKYDA-TRDSVLQVTKEA--YLSCNTSSPVAEYRDGN-TKVK 104 (181)
Q Consensus 29 ~~~~VGg~~G~W~~~~~~~~~Y~~WA~~~~f~vGD~LvF~y~~-~~HsV~~V~~~~--y~~C~~~~~~~~~s~G~-~~v~ 104 (181)
.++.+|.+.+++.+.|+ ..++++||+++|.+.. ..|++...+... -+..+..........|. .+++
T Consensus 3 ~~V~~~~~~~~~~F~P~----------~i~v~~G~~V~~~n~~~~~H~~~~~~~~~pg~~~~~~~~~~~~~~pG~~~~~t 72 (98)
T 1pcs_A 3 ATVKMGSDSGALVFEPS----------TVTIKAGEEVKWVNNKLSPHNIVFDADGVPADTAAKLSHKGLLFAAGESFTST 72 (98)
T ss_dssp EEEEESCTTSCSSEESS----------EEEECTTCEEEEEECSSCCEEEEECCSSSCHHHHHHHCEEEEECSTTCEEEEE
T ss_pred EEEEEecCCCccEEeCC----------EEEECCCCEEEEEECCCCCcEEEEeCCCCCccccccccccccccCCCCEEEEE
Confidence 35667654332777665 4689999999999764 479987643210 00000000011123443 4788
Q ss_pred ecccccEEEEeCCCCCCcCCCeEEEEee
Q 030240 105 LNKSGPFYFISGTKGSCEKGQKLIVVVM 132 (181)
Q Consensus 105 L~~~G~~YFic~v~~HC~~GmKl~I~V~ 132 (181)
++++|+|.|+|. .||..||+..|.|.
T Consensus 73 f~~~G~y~~~C~--~H~~~gM~G~i~V~ 98 (98)
T 1pcs_A 73 FTEPGTYTYYCE--PHRGAGMVGKVVVE 98 (98)
T ss_dssp CCSCEEEEEECG--GGTTTTCEEEEEEC
T ss_pred cCCCeEEEEEcC--CccccCCeEEEEEC
Confidence 899999999999 79999999999883
No 23
>4hci_A Cupredoxin 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.63A {Bacillus anthracis} PDB: 4hcg_A 4hcf_A
Probab=98.42 E-value=8.7e-08 Score=68.84 Aligned_cols=84 Identities=17% Similarity=0.103 Sum_probs=54.0
Q ss_pred ccceEEEEeCCCCCccCCCCCCccchhcccCCceecCCEEEeeeeCC---CCeEEEEccccCCCCCCCCCcccccCCC--
Q 030240 26 CEARDILVGGKTDSWKIPSSQSDSLNQWAEKTRFQVGDSLVWKYDAT---RDSVLQVTKEAYLSCNTSSPVAEYRDGN-- 100 (181)
Q Consensus 26 a~a~~~~VGg~~G~W~~~~~~~~~Y~~WA~~~~f~vGD~LvF~y~~~---~HsV~~V~~~~y~~C~~~~~~~~~s~G~-- 100 (181)
++++++.|--+ + +.+.|+ ..++++||++.|.+.+. .|++..-+ ... ......|.
T Consensus 11 a~~~~v~V~~~-~-~~F~P~----------~i~v~~G~tV~~~~~n~d~~~H~~~~~~-~~~--------~~~~~pg~~~ 69 (100)
T 4hci_A 11 ASAKVIEVELN-D-DYFNPN----------VITIPINESTTLLLKNKGKSEHTFTIKK-LGI--------DVVVESGKEK 69 (100)
T ss_dssp ---CCEEEEEE-T-TEEESS----------EEEECTTSCEEEEEEECSSSCEEEEEGG-GTE--------EEEECTTCEE
T ss_pred CCCcEEEEEEE-C-CEEeCC----------EEEECCCCEEEEEEEcCCCceEEEEEec-CCc--------ceeecCCcce
Confidence 45555655433 2 566665 56899999999998643 36665321 110 01123333
Q ss_pred -cEEEecccccEEEEeCCCCCCcCCCeEEEEee
Q 030240 101 -TKVKLNKSGPFYFISGTKGSCEKGQKLIVVVM 132 (181)
Q Consensus 101 -~~v~L~~~G~~YFic~v~~HC~~GmKl~I~V~ 132 (181)
..++.+++|.|.|+|. .||..||+..|.|.
T Consensus 70 ~~~~t~~~~G~Y~y~C~--~H~~~gM~G~i~Ve 100 (100)
T 4hci_A 70 NITVKPKSAGTYELICR--YHLLKGMEGKVIVK 100 (100)
T ss_dssp EEEECCCSCEEEEEECT--TTGGGTCEEEEEEC
T ss_pred eEEEecccCceEEEECc--cccCCCCEEEEEEC
Confidence 2567789999999997 69999999999884
No 24
>1cuo_A Protein (azurin ISO-2); beta barrel, periplasmic, electron transport; 1.60A {Methylomonas SP} SCOP: b.6.1.1 PDB: 1uat_A
Probab=98.36 E-value=3.7e-06 Score=64.00 Aligned_cols=92 Identities=7% Similarity=0.123 Sum_probs=60.2
Q ss_pred eEEEEeCCCCCccCCCCCCccchhcccCCceecC-CEEEeeeeC-C-------CCeEEEEcccc----------------
Q 030240 29 RDILVGGKTDSWKIPSSQSDSLNQWAEKTRFQVG-DSLVWKYDA-T-------RDSVLQVTKEA---------------- 83 (181)
Q Consensus 29 ~~~~VGg~~G~W~~~~~~~~~Y~~WA~~~~f~vG-D~LvF~y~~-~-------~HsV~~V~~~~---------------- 83 (181)
-++.|+.+.. ..+.++ ..+++.| |.+.|.+.+ + .|+++..+..+
T Consensus 3 ~~v~i~~~d~-m~F~p~----------~i~V~~G~~~vtv~~~N~g~~~~~~m~H~~vi~~~~~~~~~~~~~m~~~~~~~ 71 (129)
T 1cuo_A 3 CETTVTSGDT-MTYSTR----------SISVPASCAEFTVNFEHKGHMPKTGMGHNWVLAKSADVGDVAKEGAHAGADNN 71 (129)
T ss_dssp CEEEEEECSS-SCCSCS----------EEEEETTCSEEEEEEEECSSSCHHHHCBCCEEEEGGGHHHHHHHHHTTCGGGT
T ss_pred EEEEEEeCCC-ceEccC----------eEEEcCCCeEEEEEEEECCCCcccccccceEEecCcchhhhHHHhhhcccccc
Confidence 3566665555 788766 5688999 988888864 3 39988764332
Q ss_pred CCCCCCCCCc---ccccCCCc-EEEec-----ccccEEEEeCCCCCCcCCCeEEEEee
Q 030240 84 YLSCNTSSPV---AEYRDGNT-KVKLN-----KSGPFYFISGTKGSCEKGQKLIVVVM 132 (181)
Q Consensus 84 y~~C~~~~~~---~~~s~G~~-~v~L~-----~~G~~YFic~v~~HC~~GmKl~I~V~ 132 (181)
|..=+-.+.+ .....|.+ +++++ ++|+|+|+|++++|=+ |||-.|.|.
T Consensus 72 ~v~~~~~~~~~~t~~l~pGet~svtf~~~~~~~~G~Y~f~C~~pgH~~-~M~G~i~V~ 128 (129)
T 1cuo_A 72 FVTPGDKRVIAFTPIIGGGEKTSVKFKVSALSKDEAYTYFCSYPGHFS-MMRGTLKLE 128 (129)
T ss_dssp TSCTTCTTCSEECCCBCTTCEEEEEEEGGGCCTTSCEEEECCSTTCTT-TSEEEEEEE
T ss_pred ccccccccceeeeeEECCCCEEEEEEeccccCCCceEEEEeCCCCchH-cCEEEEEEe
Confidence 2110111111 12344443 45443 7999999999999999 999999985
No 25
>3ay2_A Lipid modified azurin protein; beta sandwich, bacterial protein, anticancer, anti-HIV/AIDS, antiparasitic activity, antitumor protein; 1.90A {Neisseria gonorrhoeae}
Probab=98.35 E-value=1.5e-06 Score=69.19 Aligned_cols=92 Identities=11% Similarity=0.158 Sum_probs=60.8
Q ss_pred eEEEEeCCCCCccCCCCCCccchhcccCCce-ecCCEEEeeeeC-C-------CCeEEEEcccc---------------C
Q 030240 29 RDILVGGKTDSWKIPSSQSDSLNQWAEKTRF-QVGDSLVWKYDA-T-------RDSVLQVTKEA---------------Y 84 (181)
Q Consensus 29 ~~~~VGg~~G~W~~~~~~~~~Y~~WA~~~~f-~vGD~LvF~y~~-~-------~HsV~~V~~~~---------------y 84 (181)
.++.|+.+++ +.|.++ ..++ +.||++.|.+.+ + .|+++..+..+ |
T Consensus 43 ~~V~I~~~d~-m~F~P~----------~itV~kaG~~Vtv~~~N~g~~p~~~m~Hn~vi~~~~~~~~v~~~~m~~~~~~~ 111 (167)
T 3ay2_A 43 CAATVESNDN-MQFNTK----------DIQVSKACKEFTITLKHTGTQPKASMGHNLVIAKAEDMDGVFKDGVGAADTDY 111 (167)
T ss_dssp CEEEEEECTT-SCBSCS----------EEEEETTCSSEEEEEEECSCSCHHHHCBCCEEEEGGGHHHHHHHHGGGGGGTT
T ss_pred eEEEEEeCCC-ceEecc----------eEEEecCCCEEEEEEEECCCCccccccceEEeccCcchhhhHHHhhhcccccc
Confidence 4677876667 888776 4566 779988887754 2 29988764432 2
Q ss_pred CCCCCCCCc---ccccCCCc-EEEec----ccccEEEEeCCCCCCcCCCeEEEEee
Q 030240 85 LSCNTSSPV---AEYRDGNT-KVKLN----KSGPFYFISGTKGSCEKGQKLIVVVM 132 (181)
Q Consensus 85 ~~C~~~~~~---~~~s~G~~-~v~L~----~~G~~YFic~v~~HC~~GmKl~I~V~ 132 (181)
..=+-.+.+ .....|.+ .++++ ++|+|+|+|++++|=+ |||..|.|.
T Consensus 112 v~~~d~~vl~~t~~l~pGet~svtf~~~~lkpG~Y~f~Ct~PgH~~-gM~G~i~V~ 166 (167)
T 3ay2_A 112 VKPDDARVVAHTKLIGGGEESSLTLDPAKLADGDYKFACTFPGHGA-LMNGKVTLV 166 (167)
T ss_dssp SCTTCTTEEEECCCBCTTCEEEEEECGGGGTTSCEEEECCSTTGGG-TSEEEEEEE
T ss_pred ccccccchhccceeeCCCCEEEEEEecCCCCCcEEEEEcCCCCchh-cCEEEEEEe
Confidence 110111101 12244443 56654 7999999999999999 999999985
No 26
>3c75_A Amicyanin; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.29 E-value=1e-06 Score=66.90 Aligned_cols=70 Identities=10% Similarity=0.139 Sum_probs=46.9
Q ss_pred CCceecCCEEEeeeeCC-CCeEEEEccccCCCCCCCCCcccccCCC-cEEEecccccEEEEeCCCCCCcCCCeEEEEee
Q 030240 56 KTRFQVGDSLVWKYDAT-RDSVLQVTKEAYLSCNTSSPVAEYRDGN-TKVKLNKSGPFYFISGTKGSCEKGQKLIVVVM 132 (181)
Q Consensus 56 ~~~f~vGD~LvF~y~~~-~HsV~~V~~~~y~~C~~~~~~~~~s~G~-~~v~L~~~G~~YFic~v~~HC~~GmKl~I~V~ 132 (181)
..++++||+|.|..... .|++...+...- .=.+.. .....|. .+++++++|+|.|+|+. |. ||+..|.|.
T Consensus 61 ~i~V~~GdtV~~~N~d~~~H~v~~~~~~~g-~~~~~s--~~l~pG~t~~~tF~~~G~y~y~C~~--H~--gM~G~I~V~ 132 (132)
T 3c75_A 61 EVTIKAGETVYWVNGEVMPHNVAFKKGIVG-EDAFRG--EMMTKDQAYAITFNEAGSYDYFCTP--HP--FMRGKVIVE 132 (132)
T ss_dssp EEEECTTCEEEEEECSSSCBCCEECTTTSS-SSCEEC--CCBCTTEEEEEEECSCEEEEEECSS--CT--TCEEEEEEC
T ss_pred EEEECCCCEEEEEECCCCceEEEEeCCCCC-cccccc--cccCCCCEEEEEcCCCEEEEEEeCC--Cc--CCEEEEEEC
Confidence 56889999999986543 699876532210 000001 1123343 47888999999999997 76 999999884
No 27
>3cvb_A Plastocyanin; cupredoxin, SELF assembly, copper, electron transport, metal-binding, transport; 1.40A {Phormidium laminosum} PDB: 3cvc_A 3cvd_A 2w8c_A 2w88_A 2q5b_A 1baw_A 3bqv_A
Probab=98.28 E-value=3.2e-06 Score=60.24 Aligned_cols=89 Identities=12% Similarity=0.279 Sum_probs=57.8
Q ss_pred EEEEeCCCCCccCCCCCCccchhcccCCceecCCEEEeeeeC-CCCeEEEEccccCCCCCC-------CCCcccccCCC-
Q 030240 30 DILVGGKTDSWKIPSSQSDSLNQWAEKTRFQVGDSLVWKYDA-TRDSVLQVTKEAYLSCNT-------SSPVAEYRDGN- 100 (181)
Q Consensus 30 ~~~VGg~~G~W~~~~~~~~~Y~~WA~~~~f~vGD~LvF~y~~-~~HsV~~V~~~~y~~C~~-------~~~~~~~s~G~- 100 (181)
++.||.+.++..+.++ ..+++.||+|+|.... ..|++..-... ..+.. .........|.
T Consensus 4 ~V~~~~~~~~~~f~p~----------~i~v~~Gd~V~~~N~~~~~H~v~~~~~~--~~~~~g~~~~~~~~~~~~i~pG~~ 71 (105)
T 3cvb_A 4 TVKMGADSGLFQFEPA----------NVTVHPGDTVKWVNNKLPPHNILFDDKQ--VPGASKELADKLSHSQLMFSPGES 71 (105)
T ss_dssp EEEESCTTCCSCEESS----------EEEECTTEEEEEEECSSCCEEEEECTTS--SGGGCHHHHHHHCEEEEECSTTCE
T ss_pred EEEEeecCCccEEeCC----------EEEEcCCCEEEEEECCCCCCeEEEeCCC--CCcccccccccccccccccCCCCe
Confidence 5667654222777665 4588999999998653 47998764211 11100 00001123343
Q ss_pred cEEEe---cccccEEEEeCCCCCCcCCCeEEEEee
Q 030240 101 TKVKL---NKSGPFYFISGTKGSCEKGQKLIVVVM 132 (181)
Q Consensus 101 ~~v~L---~~~G~~YFic~v~~HC~~GmKl~I~V~ 132 (181)
.++++ +++|+|+|.|. .|+..||+..|.|.
T Consensus 72 ~~~~f~~~~~~G~y~y~C~--~H~~~GM~G~i~V~ 104 (105)
T 3cvb_A 72 YEITFSSDFPAGTYTYYCA--PHRGAGMVGKITVE 104 (105)
T ss_dssp EEEEECTTSCSEEEEEECT--TTGGGTCEEEEEEC
T ss_pred EEEEEecCCCCeeEEEEeC--CchhcCCEEEEEEc
Confidence 36677 78999999999 79999999999985
No 28
>2ux6_A Pseudoazurin; type-1 copper, metal-binding, redox potential, copper, transport, cupredoxin, periplasmic, electron transport; 1.3A {Achromobacter cycloclastes} PDB: 2ux7_A 2uxf_A 2uxg_A 1bqk_A 1bqr_A 1zia_A 1zib_A 2jkw_A
Probab=98.23 E-value=1.8e-06 Score=64.89 Aligned_cols=69 Identities=14% Similarity=0.093 Sum_probs=49.6
Q ss_pred CCceecCCEEEeeeeCCCCeEEEEccccCCCCCCCCCcc-cccCC-CcEEEecccccEEEEeCCCCCCcCCCeEEEEeec
Q 030240 56 KTRFQVGDSLVWKYDATRDSVLQVTKEAYLSCNTSSPVA-EYRDG-NTKVKLNKSGPFYFISGTKGSCEKGQKLIVVVMS 133 (181)
Q Consensus 56 ~~~f~vGD~LvF~y~~~~HsV~~V~~~~y~~C~~~~~~~-~~s~G-~~~v~L~~~G~~YFic~v~~HC~~GmKl~I~V~~ 133 (181)
..++++||+|.|.+....|+|...+ .+-..+... ....| ..+++++++|.|.|+|.. |+. |+..|.|..
T Consensus 22 ~i~V~~GdtV~f~n~d~~H~v~~~~-----~~~p~~~~~~~~~~g~t~~~tF~~~G~y~y~C~~--H~~--M~G~I~V~~ 92 (122)
T 2ux6_A 22 SLKVAPGDTVTFIPTDKGHNVETIK-----GMIPDGAEAFKSKINENYKVTFTAPGVYGVKCTP--HPF--MVGVVQVGD 92 (122)
T ss_dssp EEEECTTEEEEEEESSSSCCCEECT-----TCSCTTCCCCBCCTTCCEEEEECSCEEEEEEETT--EEE--EEEEEEESS
T ss_pred EEEECCCCEEEEEECCCCcEEEEcc-----cccCCCcceeecCCCCEEEEEeCCCEEEEEEeCC--Ccc--CEEEEEEeC
Confidence 5688999999999976689997643 121211111 11123 357899999999999997 887 999999965
No 29
>2ov0_A Amicyanin; beta-sandwich, electron transport; 0.75A {Paracoccus denitrificans} SCOP: b.6.1.1 PDB: 1aaj_A 1aan_A 1aac_A 1mg2_C* 1mg3_C* 1t5k_A 2gc4_C* 2gc7_C* 2j55_A* 2j56_A* 2j57_A* 2mta_A* 1bxa_A 2rac_A 3l45_A 3ie9_A 3iea_A 2idq_A 2ids_A 1sf3_A ...
Probab=98.11 E-value=5.4e-06 Score=60.01 Aligned_cols=84 Identities=15% Similarity=0.178 Sum_probs=56.5
Q ss_pred ccceEEEEeCCCCCccCCCCCCccchhcccCCceecCCEEEeeeeCC-CCeEEEEcccc----CCCCCCCCCcccccCCC
Q 030240 26 CEARDILVGGKTDSWKIPSSQSDSLNQWAEKTRFQVGDSLVWKYDAT-RDSVLQVTKEA----YLSCNTSSPVAEYRDGN 100 (181)
Q Consensus 26 a~a~~~~VGg~~G~W~~~~~~~~~Y~~WA~~~~f~vGD~LvF~y~~~-~HsV~~V~~~~----y~~C~~~~~~~~~s~G~ 100 (181)
+.+.++.|.- .+ |.+.++ ..++++||+|.|..... .|+|...+..+ |+.. ....|.
T Consensus 16 ~~a~~~~V~~-~~-~~F~P~----------~i~v~~Gd~V~~~N~d~~~H~v~~~~~~~g~~~~~~~-------~~~pG~ 76 (105)
T 2ov0_A 16 VADGAIVVDI-AK-MKYETP----------ELHVKVGDTVTWINREAMPHNVHFVAGVLGEAALKGP-------MMKKEQ 76 (105)
T ss_dssp CCTTCEEEEE-ET-TEESSS----------EEEECTTCEEEEEECSSSCBCCEECTTTSSSSCEECC-------CBCTTE
T ss_pred CCCcCEEEEE-ee-cEEcCC----------EEEECCCCEEEEEECCCCCEEEEEcCCCCCccccccc-------ccCCCC
Confidence 3455666654 34 777766 56889999999987543 79987543210 1111 123333
Q ss_pred -cEEEecccccEEEEeCCCCCCcCCCeEEEEee
Q 030240 101 -TKVKLNKSGPFYFISGTKGSCEKGQKLIVVVM 132 (181)
Q Consensus 101 -~~v~L~~~G~~YFic~v~~HC~~GmKl~I~V~ 132 (181)
..++++++|.|+|.|.. |. ||+..|.|.
T Consensus 77 ~~~~tf~~~G~y~y~C~~--H~--gM~G~i~V~ 105 (105)
T 2ov0_A 77 AYSLTFTEAGTYDYHCTP--HP--FMRGKVVVE 105 (105)
T ss_dssp EEEEEECSCEEEEEECSS--CT--TCEEEEEEC
T ss_pred EEEEEeCCCEEEEEEeCC--CC--CCEEEEEEC
Confidence 47888999999999997 54 999999873
No 30
>1id2_A Amicyanin; beta barrel, type-1 blue copper protein, electron transfer protein, electron transport; 2.15A {Paracoccus versutus} SCOP: b.6.1.1
Probab=98.10 E-value=6.3e-06 Score=59.89 Aligned_cols=87 Identities=13% Similarity=0.166 Sum_probs=55.9
Q ss_pred cceEEEEeCCCCCccCCCCCCccchhcccCCceecCCEEEeeeeCC-CCeEEEEccccCCCCCCCCCcccccCCC-cEEE
Q 030240 27 EARDILVGGKTDSWKIPSSQSDSLNQWAEKTRFQVGDSLVWKYDAT-RDSVLQVTKEAYLSCNTSSPVAEYRDGN-TKVK 104 (181)
Q Consensus 27 ~a~~~~VGg~~G~W~~~~~~~~~Y~~WA~~~~f~vGD~LvF~y~~~-~HsV~~V~~~~y~~C~~~~~~~~~s~G~-~~v~ 104 (181)
.+.++.|.-. + +.+.|+ ..++++||+|.|..... .|++...+... ..-.+.. .....|. .+++
T Consensus 18 ~~~~~~V~~~-~-~~F~P~----------~i~V~~G~tV~~~N~d~~~H~v~~~~~~~-~~~~~~s--~~l~~g~~~~~t 82 (106)
T 1id2_A 18 PADAVVVGIE-K-MKYLTP----------EVTIKAGETVYWVNGEVMPHNVAFKKGIV-GEDAFRG--EMMTKDQAYAIT 82 (106)
T ss_dssp CTTCEEEEEE-T-TEESSS----------EEEECTTCEEEEEECSSSCBCCEECTTTS-SSSCEEC--CCBCTTEEEEEE
T ss_pred CCccEEEEEE-e-cEEeCC----------EEEECCCCEEEEEECCCCcEEEEEeCCCC-Ccccccc--cccCCCCEEEEE
Confidence 3445555542 3 677665 56889999999986543 69987543210 0000000 1123343 4788
Q ss_pred ecccccEEEEeCCCCCCcCCCeEEEEee
Q 030240 105 LNKSGPFYFISGTKGSCEKGQKLIVVVM 132 (181)
Q Consensus 105 L~~~G~~YFic~v~~HC~~GmKl~I~V~ 132 (181)
++++|.|.|+|.. |. ||+..|.|.
T Consensus 83 f~~~G~y~~~C~~--H~--~M~G~I~V~ 106 (106)
T 1id2_A 83 FNEAGSYDYFCTP--HP--FMRGKVIVE 106 (106)
T ss_dssp ECSCEEEEEECSS--CT--TCEEEEEEC
T ss_pred eCCCEEEEEEeCC--CC--CCEEEEEEC
Confidence 8999999999997 77 999999883
No 31
>2iaa_C Azurin; quinoprotein, tryptophan tryptophylquinone, cupredoxin, electron transfer, oxidoreductase/electron transport comple; HET: TRQ; 1.95A {Alcaligenes faecalis} PDB: 2h47_C* 2h3x_C*
Probab=98.10 E-value=1.7e-05 Score=60.29 Aligned_cols=91 Identities=15% Similarity=0.252 Sum_probs=57.2
Q ss_pred EEEEeCCCCCccCCCCCCccchhcccCCce-ecCCEEEeeeeCC--------CCeEEEEccc----------------cC
Q 030240 30 DILVGGKTDSWKIPSSQSDSLNQWAEKTRF-QVGDSLVWKYDAT--------RDSVLQVTKE----------------AY 84 (181)
Q Consensus 30 ~~~VGg~~G~W~~~~~~~~~Y~~WA~~~~f-~vGD~LvF~y~~~--------~HsV~~V~~~----------------~y 84 (181)
++.|+.+.+ +.+.++ ..++ +.||++.|.|.+. .|+++..+.. +|
T Consensus 3 ~v~v~~~d~-m~F~p~----------~i~V~k~G~~vtv~~~N~g~~p~~~m~Hn~vi~~~~~~~~~~~~~m~~~~~~~~ 71 (128)
T 2iaa_C 3 DVSIEGNDS-MQFNTK----------SIVVDKTCKEFTINLKHTGKLPKAAMGHNVVVSKKSDESAVATDGMKAGLNNDY 71 (128)
T ss_dssp EEEEEECTT-SCBSCS----------EEEECTTCSEEEEEEEECSCSCHHHHCBCCEEEETTHHHHHHHHHHHHCGGGTT
T ss_pred EEEEEeCCC-ceEecC----------EEEEecCCcEEEEEEEECCCCcccCCCceEEEccccchhhHHHhhhhccccccc
Confidence 455666666 888766 3355 5699888888643 3998766432 22
Q ss_pred CCCCCCCCc---ccccCCCc-EEEec----ccc-cEEEEeCCCCCCcCCCeEEEEee
Q 030240 85 LSCNTSSPV---AEYRDGNT-KVKLN----KSG-PFYFISGTKGSCEKGQKLIVVVM 132 (181)
Q Consensus 85 ~~C~~~~~~---~~~s~G~~-~v~L~----~~G-~~YFic~v~~HC~~GmKl~I~V~ 132 (181)
..=+-.+.+ .....|.+ +++++ ++| .|.|+|++++|=+ |||-.|.|.
T Consensus 72 ~~~~~~~~~~~t~~l~pGes~~vtf~~~~l~~G~~Y~f~C~~PgH~~-gM~G~i~V~ 127 (128)
T 2iaa_C 72 VKAGDERVIAHTSVIGGGETDSVTFDVSKLKEGEDYAFFCSFPGHWS-IMKGTIELG 127 (128)
T ss_dssp SCTTCTTEEEECCCBCTTCEEEEEEESSCCCTTCCEEEECCSTTCTT-TSEEEEEEC
T ss_pred cccccchhhccceeeCCCCEEEEEEeccccCCCceEEEEECCCChhH-CCEEEEEEe
Confidence 110111101 12244443 55554 678 5999999999999 999999985
No 32
>2ccw_A Azurin II, AZN-2; electron transport (cuproprotein), alcaligenes xylosoxidans, electron transfer, cupredoxin, electron transport; 1.13A {Alcaligenes xylosoxydans} SCOP: b.6.1.1 PDB: 1dz0_A 1dyz_A 1aiz_A 1azb_A 1azc_A 1uri_A 2aza_A 1a4a_A 1a4b_A 1a4c_A
Probab=98.06 E-value=1.6e-05 Score=60.42 Aligned_cols=92 Identities=8% Similarity=0.143 Sum_probs=57.3
Q ss_pred eEEEEeCCCCCccCCCCCCccchhcccCCce-ecCCEEEeeeeCC--------CCeEEEEccc----------------c
Q 030240 29 RDILVGGKTDSWKIPSSQSDSLNQWAEKTRF-QVGDSLVWKYDAT--------RDSVLQVTKE----------------A 83 (181)
Q Consensus 29 ~~~~VGg~~G~W~~~~~~~~~Y~~WA~~~~f-~vGD~LvF~y~~~--------~HsV~~V~~~----------------~ 83 (181)
-++.|+.+.+ ..+.++ ..++ +.||++.|.+.+. .|+++..+.. +
T Consensus 3 ~~v~v~~~d~-m~F~p~----------~i~V~k~G~~vtv~~~N~g~~p~~~m~H~~vi~~~~~~~~~~~~~~~~~~~~~ 71 (129)
T 2ccw_A 3 CEATVESNDA-MQYNVK----------EIVVDKSCKQFTMHLKHVGKMAKVAMGHNLVLTKDADKQAVATDGMGAGLAQD 71 (129)
T ss_dssp SEEEEEECTT-SCBSCS----------EEEECTTCSEEEEEEEECSCCCHHHHCBCCEEEEGGGHHHHHHHHHHHCGGGT
T ss_pred EEEEEEeCCC-ccEecc----------eEEEecCCCEEEEEEEECCCcccccCcceEEEcCccchhhhHHHhhhhccccc
Confidence 3566766666 787766 3345 5599888888643 3998876433 2
Q ss_pred CCCCCCCCCc---ccccCCCc-EEEec----cccc-EEEEeCCCCCCcCCCeEEEEee
Q 030240 84 YLSCNTSSPV---AEYRDGNT-KVKLN----KSGP-FYFISGTKGSCEKGQKLIVVVM 132 (181)
Q Consensus 84 y~~C~~~~~~---~~~s~G~~-~v~L~----~~G~-~YFic~v~~HC~~GmKl~I~V~ 132 (181)
|..=+-.+.+ .....|.+ +++++ ++|. |.|+|++++|=+ |||-.|.|.
T Consensus 72 ~~~~~~~~~~~~t~~l~pGet~svtf~~~~l~~G~~Y~f~C~~pgH~~-gM~G~i~V~ 128 (129)
T 2ccw_A 72 YVKAGDTRVIAHTKVIGGGESDSVTFDVSKIAAGENYAYFCSFPGHWA-MMKGTLKLG 128 (129)
T ss_dssp TSCTTCTTEEEECCCBCTTCEEEEEEEGGGSCTTCCEEEECCSTTGGG-TSEEEEEEC
T ss_pred ccccccccceeeeeEECCCCEEEEEEeccccCCCceEEEEeCCCChhH-cCEEEEEEe
Confidence 2110111101 12244443 45544 5665 999999999999 999999985
No 33
>1nwp_A Azurin; electron transport, cupredoxin, electron transfer; 1.60A {Pseudomonas putida} SCOP: b.6.1.1 PDB: 1nwo_A 1joi_A
Probab=98.06 E-value=1.6e-05 Score=60.46 Aligned_cols=92 Identities=9% Similarity=0.130 Sum_probs=58.5
Q ss_pred eEEEEeCCCCCccCCCCCCccchhcccCCce-ecCCEEEeeeeCC--------CCeEEEEccccCC--------------
Q 030240 29 RDILVGGKTDSWKIPSSQSDSLNQWAEKTRF-QVGDSLVWKYDAT--------RDSVLQVTKEAYL-------------- 85 (181)
Q Consensus 29 ~~~~VGg~~G~W~~~~~~~~~Y~~WA~~~~f-~vGD~LvF~y~~~--------~HsV~~V~~~~y~-------------- 85 (181)
-++.|+.+.+ +.+.++ ..++ +.||++.|.+.+. .|+++..+..+.+
T Consensus 3 ~~v~v~~~d~-m~F~p~----------~i~V~k~G~~vtv~~~N~g~~p~~~m~H~~vi~~~~~~~~~~~~~m~~~~~~~ 71 (128)
T 1nwp_A 3 CKVTVDSTDQ-MSFNTK----------DIAIDKSCKTFTVELTHSGSLPKNVMGHNLVISKEADMQPIATDGLSAGIDKQ 71 (128)
T ss_dssp CEEEEEECTT-SCBSCS----------EEEECTTCSEEEEEEEECSSCCHHHHCBCCEEEEGGGHHHHHHHHTTTCGGGT
T ss_pred EEEEEEeCCC-ccEecC----------EEEEecCCCEEEEEEEECCCCcccCCCceEEEccccchhhHHHHHhhcccccc
Confidence 3566776666 888776 4567 7899888888643 3998876432211
Q ss_pred --CCCCCCCc---ccccCCCc-EEEec----cccc-EEEEeCCCCCCcCCCeEEEEee
Q 030240 86 --SCNTSSPV---AEYRDGNT-KVKLN----KSGP-FYFISGTKGSCEKGQKLIVVVM 132 (181)
Q Consensus 86 --~C~~~~~~---~~~s~G~~-~v~L~----~~G~-~YFic~v~~HC~~GmKl~I~V~ 132 (181)
.=+-.+.+ .....|.+ +++++ ++|. |.|+|++++|=+ |||..|.|.
T Consensus 72 ~~~~~~~~~~~~t~~l~pGet~svtf~~~~l~~G~~Y~f~C~~PgH~~-gM~G~i~V~ 128 (128)
T 1nwp_A 72 YLKDGDARVIAHTKVIGAGEKDSVTFDVSKLAAGEKYGFFCSFPGHIS-MMKGTVTLK 128 (128)
T ss_dssp TSCTTCTTEEEECCCBCTTCEEEEEEEGGGSCTTSCEEEECCSTTCGG-GSEEEEEEC
T ss_pred ccccccchhheeeeeeCCCCEEEEEEeccccCCCceEEEEECCCChhH-CCEEEEEEC
Confidence 00100001 12344543 55554 4676 999999999999 999999883
No 34
>1iko_P Ephrin-B2; greek KEY, glycosylation, signaling protein; HET: NAG MAN; 1.92A {Mus musculus} SCOP: b.6.1.5
Probab=97.53 E-value=3.9e-05 Score=61.73 Aligned_cols=77 Identities=22% Similarity=0.359 Sum_probs=51.2
Q ss_pred eecCCEEEee---eeC------CCCeEEEEccccCCCCCCCC-Cc--ccccC--CCcEEEec-------------ccc-c
Q 030240 59 FQVGDSLVWK---YDA------TRDSVLQVTKEAYLSCNTSS-PV--AEYRD--GNTKVKLN-------------KSG-P 110 (181)
Q Consensus 59 f~vGD~LvF~---y~~------~~HsV~~V~~~~y~~C~~~~-~~--~~~s~--G~~~v~L~-------------~~G-~ 110 (181)
.++||.|.+- |+. ..+.|++|++++|+.|+... +. ..-+. +...+++. ++| .
T Consensus 26 v~igD~LdIiCP~~~~~~~~~~E~~~LY~Vs~~~y~~C~~~~~~~~l~~C~~P~~~~kftikFq~fsP~p~GlEF~pg~~ 105 (178)
T 1iko_P 26 PQIGDKLDIICPKVDSKTVGQYEYYKVYMVDKDQADRCTIKKENTPLLNCARPDQDVKFTIKFQEFSPNLWGLEFQKNKD 105 (178)
T ss_dssp CCTTCEEEEECCCCCSSSCSCCCBEEEEEECHHHHHHTBCCTTCCCSEEECCTTSCCEEEEECCSSCSSTTCCCCCTTEE
T ss_pred ecCCCEEEEECCCCCCCCCCCceEEEEEEECHHHhhhcccCCCCcEEEEecCCCCCEEEEEEEEecCCCCCcccccCCCc
Confidence 4569999875 322 24788999999999998873 21 11111 22233321 356 8
Q ss_pred EEEEeCCC-----------CCCcC-CCeEEEEeecCC
Q 030240 111 FYFISGTK-----------GSCEK-GQKLIVVVMSSR 135 (181)
Q Consensus 111 ~YFic~v~-----------~HC~~-GmKl~I~V~~~~ 135 (181)
|||||+-. ++|.. +|||.|.|....
T Consensus 106 YY~IstS~G~~~gl~~~~gG~C~t~~Mkl~ikV~~~~ 142 (178)
T 1iko_P 106 YYIISTSNGSLEGLDNQEGGVCQTRAMKILMKVGQDA 142 (178)
T ss_dssp EEEECCCCBSGGGTTCCBSHHHHHSCCEEEEEETCC-
T ss_pred eEEEecCCcccccccccCCCccccceeEEEEEeecCC
Confidence 99999853 78996 999999997654
No 35
>2cua_A Protein (CUA); CUA center, electron transport; 1.60A {Thermus thermophilus} SCOP: b.6.1.2 PDB: 2fwl_B*
Probab=97.32 E-value=0.00063 Score=51.86 Aligned_cols=82 Identities=13% Similarity=0.188 Sum_probs=52.8
Q ss_pred eEEEEeCCCCCccCCCCCCccchhcccCCceecCCEEEeeeeCC--CCeEEEEccccCCCCCCCCCcccccCC---CcEE
Q 030240 29 RDILVGGKTDSWKIPSSQSDSLNQWAEKTRFQVGDSLVWKYDAT--RDSVLQVTKEAYLSCNTSSPVAEYRDG---NTKV 103 (181)
Q Consensus 29 ~~~~VGg~~G~W~~~~~~~~~Y~~WA~~~~f~vGD~LvF~y~~~--~HsV~~V~~~~y~~C~~~~~~~~~s~G---~~~v 103 (181)
.++.|.+. . |.+.++ ..++.+||.+.|..++. .|++..-+ ... ......| ...+
T Consensus 46 ~~V~v~~~-~-~~f~P~----------~l~Vp~G~~V~~~vts~DV~Hsf~ip~-~~~--------k~d~~PG~~~~~~~ 104 (135)
T 2cua_A 46 YTVYVLAF-A-FGYQPN----------PIEVPQGAEIVFKITSPDVIHGFHVEG-TNI--------NVEVLPGEVSTVRY 104 (135)
T ss_dssp EEEEEEEE-T-TEEESS----------SEEEETTSEEEEEEEBSSSCEEEEETT-SSC--------EEEECBTBCEEEEE
T ss_pred EEEEEEEE-e-CEEECC----------EEEEcCCCEEEEEEEeCCccceEEecC-CCc--------eeEeCCCCcEEEEE
Confidence 34555443 3 665555 56899999999999753 46654321 110 1112233 2478
Q ss_pred EecccccEEEEeCCCCCCc---CCCeEEEEeec
Q 030240 104 KLNKSGPFYFISGTKGSCE---KGQKLIVVVMS 133 (181)
Q Consensus 104 ~L~~~G~~YFic~v~~HC~---~GmKl~I~V~~ 133 (181)
+++++|.|+|.|.. +|- .+|+..|.|.+
T Consensus 105 ~~~~~G~y~~~C~e--~CG~~H~~M~g~v~V~~ 135 (135)
T 2cua_A 105 TFKRPGEYRIICNQ--YCGLGHQNMFGTIVVKE 135 (135)
T ss_dssp ECCSCEEEEEECCS--CCSTTSTTCEEEEEEEC
T ss_pred EcCCCEEEEEECcc--cCCCCcCCCEEEEEEEC
Confidence 89999999999986 343 68999999863
No 36
>1iby_A Nitrosocyanin; RED copper, cupredoxin, beta hairpin, metal binding protein; 1.65A {Nitrosomonas europaea} SCOP: b.6.1.4 PDB: 1ibz_A 1ic0_A
Probab=97.30 E-value=0.00036 Score=50.44 Aligned_cols=66 Identities=12% Similarity=0.098 Sum_probs=44.0
Q ss_pred CCceecCCEEEeeeeCC---CCeEEEEccccCCCCCCCCCcccccCCCc-EE--EecccccEEEEeCCCCCCcC-CCeEE
Q 030240 56 KTRFQVGDSLVWKYDAT---RDSVLQVTKEAYLSCNTSSPVAEYRDGNT-KV--KLNKSGPFYFISGTKGSCEK-GQKLI 128 (181)
Q Consensus 56 ~~~f~vGD~LvF~y~~~---~HsV~~V~~~~y~~C~~~~~~~~~s~G~~-~v--~L~~~G~~YFic~v~~HC~~-GmKl~ 128 (181)
..+++.||.+.|.+.+. .|++..-+. . .......|.. .+ +.+++|.|+|.|.. ||.. +|+..
T Consensus 39 ~i~v~~G~~V~~~~~n~d~~~H~~~i~~~-~--------~~~~i~pG~~~~~~f~~~~~G~y~~~C~~--~~~~~~M~g~ 107 (112)
T 1iby_A 39 TLVVKKGDAVKVVVENKSPISEGFSIDAF-G--------VQEVIKAGETKTISFTADKAGAFTIWCQL--HPKNIHLPGT 107 (112)
T ss_dssp EEEEETTCEEEEEEEECSSSCEEEEEGGG-T--------EEEEECTTCEEEEEEECCSCEEEEEBCSS--SCTTTBCCEE
T ss_pred EEEEeCCCEEEEEEEECCCCeEEEEEcCC-C--------ceeEeCCCCEEEEEEECCCCEEEEEECCC--CCchHHCEEE
Confidence 46889999999988643 577653221 1 0112234432 44 44899999999996 6753 49999
Q ss_pred EEee
Q 030240 129 VVVM 132 (181)
Q Consensus 129 I~V~ 132 (181)
|.|.
T Consensus 108 i~V~ 111 (112)
T 1iby_A 108 LNVV 111 (112)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9885
No 37
>3fsa_A Azurin; copper, cupredoxin fold, metal-binding, protein-protein interaction, metal binding protein; 0.98A {Pseudomonas aeruginosa} SCOP: b.6.1.1 PDB: 2xv2_A 2xv0_A 3fs9_A 2fta_A* 2hx7_A 2hx8_A 2hx9_A 2hxa_A 1cc3_A 2ft6_A 2ft7_A 2ft8_A 1azn_A 3n2j_A 2iwe_A 2ghz_A 2gi0_A 1jzg_A* 1azu_A* 1bex_A ...
Probab=96.75 E-value=0.017 Score=43.77 Aligned_cols=88 Identities=10% Similarity=0.181 Sum_probs=52.7
Q ss_pred EEEEeCCCCCccCCCCCCccchhcccCCceec-CCEEEeeeeC-C-------CCeEEEEccc----------------cC
Q 030240 30 DILVGGKTDSWKIPSSQSDSLNQWAEKTRFQV-GDSLVWKYDA-T-------RDSVLQVTKE----------------AY 84 (181)
Q Consensus 30 ~~~VGg~~G~W~~~~~~~~~Y~~WA~~~~f~v-GD~LvF~y~~-~-------~HsV~~V~~~----------------~y 84 (181)
++.|..++. ..+.++ ..++.. |+++.|.+.+ + .||++..+.. +|
T Consensus 4 ~v~i~~~d~-M~F~p~----------~i~V~~~Ge~V~~~l~N~G~~p~~~M~Hn~Vl~~~~~~~~~~~~~m~~~~~~~y 72 (125)
T 3fsa_A 4 SVDIQGNDQ-MQFNTN----------AITVDKSCKQFTVNLSHPGNLPKNVMGHNWVLSTAADMQGVVTDGMASGLDKDY 72 (125)
T ss_dssp EEEEEBCTT-SCBSCS----------EEEECTTCSEEEEEEECCSSCCHHHHCBCCEEEEHHHHHHHHHHHHHHCGGGTT
T ss_pred EEEEEccCC-cEEecC----------EEEEecCCCEEEEEEEECCcccccccCceEEEcccchHHHHHHHHHhcChhhcc
Confidence 455555566 777666 344543 9999998875 3 3999876322 22
Q ss_pred CCCCCCCCc---ccccCCCc-EEEec-----ccccEEEEeCCCCCCcCCCeEEEEee
Q 030240 85 LSCNTSSPV---AEYRDGNT-KVKLN-----KSGPFYFISGTKGSCEKGQKLIVVVM 132 (181)
Q Consensus 85 ~~C~~~~~~---~~~s~G~~-~v~L~-----~~G~~YFic~v~~HC~~GmKl~I~V~ 132 (181)
..=+-.+.+ .....|.+ +++++ ++|.|-|+|+ +|= |||..|.|.
T Consensus 73 ~~~~d~~via~t~~l~pGes~~vtf~~~~l~~~G~y~f~C~--gH~--~M~G~v~V~ 125 (125)
T 3fsa_A 73 LKPDDSRVIAHTKLIGSGEKDSVTFDVSKLKEGEQYMFFCA--AHA--AMKGTLTLK 125 (125)
T ss_dssp SCTTCTTCCEECCCBCTTCEEEEEEEGGGC---CCEEEECS--SST--TCEEEEEEC
T ss_pred CCCCCccceeccceeCCCcEEEEEEeCcCcCCCccEEEEcC--CCC--CcEEEEEEC
Confidence 111111111 12344543 55554 5699999999 887 999999873
No 38
>2vsm_B Ephrin-B2; developmental protein, henipavirus, neurogenesis, glycoprotein, paramyxovirus, envelope protein, cell surface receptor, hendra, virion; HET: NAG; 1.80A {Homo sapiens} PDB: 2wo2_B* 2i85_A 3gxu_B 2vsk_B 2hle_B 1kgy_E
Probab=96.69 E-value=0.0019 Score=49.99 Aligned_cols=75 Identities=24% Similarity=0.379 Sum_probs=47.6
Q ss_pred eecCCEEEee---eeC------CCCeEEEEccccCCCCCCCC-Ccccc--c--CCCcEEEec-------------ccc-c
Q 030240 59 FQVGDSLVWK---YDA------TRDSVLQVTKEAYLSCNTSS-PVAEY--R--DGNTKVKLN-------------KSG-P 110 (181)
Q Consensus 59 f~vGD~LvF~---y~~------~~HsV~~V~~~~y~~C~~~~-~~~~~--s--~G~~~v~L~-------------~~G-~ 110 (181)
.++||.|.+- |+. ....+++|++++|+.|+... +...+ + .++.++++. ++| .
T Consensus 25 v~i~D~ldIiCP~~~~~~~~~~E~~~lY~Vs~~~y~~C~~~~~~~~~~~C~~P~~~~kft~kFq~fsP~~~G~eF~~g~~ 104 (140)
T 2vsm_B 25 PQIGDKLDIICPKVDSKTVGQYEYYKVYMVDKDQADRCTIKKENTPLLNCAKPDQDIKFTIKFQEFSPNLWGLEFQKNKD 104 (140)
T ss_dssp CCTTCEEEEEECCCC---CCCCCBEEEEEECHHHHHHTBCCTTCCCSEEECCTTSCEEEEEESSSCCSCSSCCCCCTTEE
T ss_pred ecCCCEEEEECCCCCCCCCCCceEEEEEEECHHHhhhcccCCCCcEEEEecCCCCCEEEEEEEEecCCCCCcccccCCCc
Confidence 4579999875 321 14668899999999998863 22111 1 122222221 356 6
Q ss_pred EEEEeCCC-----------CCCcC-CCeEEEEeec
Q 030240 111 FYFISGTK-----------GSCEK-GQKLIVVVMS 133 (181)
Q Consensus 111 ~YFic~v~-----------~HC~~-GmKl~I~V~~ 133 (181)
||||++-. |-|.. .||+.|.|..
T Consensus 105 YY~Ists~g~~~gl~~~~gG~C~t~~mkl~i~V~~ 139 (140)
T 2vsm_B 105 YYIISTSNGSLEGLDNQEGGVCQTRAMKILMKVGH 139 (140)
T ss_dssp EEEECCCCBSGGGTTCCBSHHHHHSCCEEEEEETC
T ss_pred eEEEecCCCCccccccccCCccccceEEEEEEecC
Confidence 88888732 47885 8999999853
No 39
>3czu_B Ephrin-A1; ATP-binding, kinase, nucleotide-binding, receptor, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG MAN; 2.65A {Homo sapiens} PDB: 3mbw_B*
Probab=96.57 E-value=0.0044 Score=49.87 Aligned_cols=101 Identities=23% Similarity=0.355 Sum_probs=56.2
Q ss_pred cccceEEEEeCCCCCccCCCCCCccchhcccCCceecCCEEEee---eeC--------CCCeEEEEccccCCCCCCCC-C
Q 030240 25 FCEARDILVGGKTDSWKIPSSQSDSLNQWAEKTRFQVGDSLVWK---YDA--------TRDSVLQVTKEAYLSCNTSS-P 92 (181)
Q Consensus 25 ~a~a~~~~VGg~~G~W~~~~~~~~~Y~~WA~~~~f~vGD~LvF~---y~~--------~~HsV~~V~~~~y~~C~~~~-~ 92 (181)
.+++..+.|= |... | ..+... --...+++||.|-+- |+. ....+++|++++|+.|+... +
T Consensus 26 ~~sa~rh~Vy-----WNSs-N-p~F~~~-~y~i~V~i~D~LDIiCP~y~~~~~~~~~~E~y~LY~Vs~e~y~sC~~~~~~ 97 (182)
T 3czu_B 26 MDAADRHTVF-----WNSS-N-PKFRNE-DYTIHVQLNDYVDIICPHYEDHSVADAAMEQYILYLVEHEEYQLCQPQSKD 97 (182)
T ss_dssp ---CCEEEEE-----CSTT-C-GGGTTS-CCEEEECTTCEEEEECCCCC--CCCGGGSCCEEEEEECHHHHHHTCCCCGG
T ss_pred hhhccccceE-----EcCC-C-ccccCC-CceEEeccCCEEEEECCCCCCCCCCCCCceEEEEEEECHHHhhhccCCCCC
Confidence 4556667663 8763 3 111111 113467899999774 332 13567899999999998764 2
Q ss_pred cccc------c-CCCcEEEec-------------ccc-cEEEEeC----CCCCCcCCCeEEEEeecCCC
Q 030240 93 VAEY------R-DGNTKVKLN-------------KSG-PFYFISG----TKGSCEKGQKLIVVVMSSRR 136 (181)
Q Consensus 93 ~~~~------s-~G~~~v~L~-------------~~G-~~YFic~----v~~HC~~GmKl~I~V~~~~~ 136 (181)
...+ . .|+.++++. ++| .||||++ .++.| ||+.|.|.....
T Consensus 98 ~~~~~C~~P~~~~~p~kftikFQ~FSP~p~GlEF~pG~dYY~ISts~~~~gg~C---mrL~v~V~~k~~ 163 (182)
T 3czu_B 98 QVRWQCNRPSAKHGPEKLSEKFQRFTPFTLGKEFKEGHSYYYISKPIHQHEDRC---LRLKVTVSGKIT 163 (182)
T ss_dssp GEEEEECCTTCTTSCCEEEEECCSCCSCTTSCCCCTTCEEEEEEEESSSCCCSC---CEEEEEECC---
T ss_pred cEEEEeCCCCCCCCCcEEEEEEEEcCCCCCCeeEeCCCeEEEEEccCCCCCCcc---eEEEEEEecCCC
Confidence 1111 1 122222211 356 6899986 34566 899999986554
No 40
>3d12_B Ephrin-B3; beta propeller, protein-receptor complex, envelope protein, glycoprotein, hemagglutinin, hydrolase, membrane, signal-AN transmembrane; HET: NAG BMA MAN BGC LXZ NGA GL0 GLC LXB NGZ GXL; 3.00A {Mus musculus}
Probab=96.35 E-value=0.0046 Score=47.87 Aligned_cols=74 Identities=22% Similarity=0.307 Sum_probs=48.3
Q ss_pred ceecCCEEEee---eeC---------CCCeEEEEccccCCCCCCCC-Ccccc--c--CCCcEE--------------Eec
Q 030240 58 RFQVGDSLVWK---YDA---------TRDSVLQVTKEAYLSCNTSS-PVAEY--R--DGNTKV--------------KLN 106 (181)
Q Consensus 58 ~f~vGD~LvF~---y~~---------~~HsV~~V~~~~y~~C~~~~-~~~~~--s--~G~~~v--------------~L~ 106 (181)
..++||.|.+- |+. ....+++|++++|+.|+... +...+ + .++.++ .+
T Consensus 23 ~V~i~D~ldIiCP~~~~~~~~~~~~~E~~~lY~Vs~~~y~~C~~~~~~~~~~~C~~P~~~~kft~kFq~fsP~p~G~EF- 101 (141)
T 3d12_B 23 YPQIGDRLDLLCPRARPPGPHSSPSYEFYKLYLVEGAQGRRCEAPPAPNLLLTCDRPDLDLRFTIKFQEYSPNLWGHEF- 101 (141)
T ss_dssp CCCTTCEEEEEECCCSSCCTTCCSSCCCCEEEEECSHHHHTTBCCSSCEEEEECCCSSSCEEEEEESSSCCSCCSCCCC-
T ss_pred EecCCCEEEEECCCCCCCCCCCCCCceEEEEEEECHHHhccccCCCCCeEEEEeCCCCCCeEEEEEEEEcCCCCCceee-
Confidence 56789999775 332 24567899999999998862 22111 1 122222 22
Q ss_pred ccc-cEEEEeCC-----------CCCCcC-CCeEEEEee
Q 030240 107 KSG-PFYFISGT-----------KGSCEK-GQKLIVVVM 132 (181)
Q Consensus 107 ~~G-~~YFic~v-----------~~HC~~-GmKl~I~V~ 132 (181)
++| .||||++- +|-|.. +||+.|.|.
T Consensus 102 ~pG~~YY~ISts~G~~~gl~~~~gG~C~t~~Mkl~i~V~ 140 (141)
T 3d12_B 102 RSHHDYYIIATSDGTREGLESLQGGVCLTRGMKVLLRVG 140 (141)
T ss_dssp CTTCEEEEEECSCSSTTTTTCCBCSHHHHTCCEEEEECC
T ss_pred eCCCeEEEEecCCCCcccccccCCCccccceEEEEEEec
Confidence 356 79999863 357985 899999985
No 41
>2x11_B Ephrin-A5; receptor-signaling protein complex, developmental protein, signaling platform, kinase, transferase, neurogenesis, receptor, cataract; 4.83A {Homo sapiens}
Probab=96.35 E-value=0.0057 Score=49.04 Aligned_cols=77 Identities=25% Similarity=0.441 Sum_probs=49.3
Q ss_pred CceecCCEEEee---eeC-------CCCeEEEEccccCCCCCCCCCcc-cc------c-CCCcEEEec------------
Q 030240 57 TRFQVGDSLVWK---YDA-------TRDSVLQVTKEAYLSCNTSSPVA-EY------R-DGNTKVKLN------------ 106 (181)
Q Consensus 57 ~~f~vGD~LvF~---y~~-------~~HsV~~V~~~~y~~C~~~~~~~-~~------s-~G~~~v~L~------------ 106 (181)
..+++||.|.+- |+. ....+++|++++|++|+...... .+ . .|+.++++.
T Consensus 52 i~V~i~D~LDIiCP~y~~~~~~~~~E~y~LY~Vs~e~y~~C~~~~~~~~~~~C~~P~~p~~~~kftikFQ~FSP~p~G~E 131 (177)
T 2x11_B 52 IDVCINDYLDVFCPHYEDSVPEDKTERYVLYMVNFDGYSACDHTSKGFKRWECNRPHSPNGPLKFSEKFQLFTPFSLGFE 131 (177)
T ss_dssp EEECTTCEEEEECCCCCSSSCSSSCCCEEEEEECHHHHHHTCCTTTEEEEEEECCTTCSSSSCEEEEECCSSCSSTTCCC
T ss_pred EEecCCCEEEEECCCCCCCCCCCCceEEEEEEECHHHhccccCCCCCcEEEEeCCCCCCCCCeEEEEEEEEcCCCCCCcc
Confidence 457799999774 331 24567899999999998865321 11 1 133333221
Q ss_pred -ccc-cEEEEeCC-----CCCCcCCCeEEEEeecCCC
Q 030240 107 -KSG-PFYFISGT-----KGSCEKGQKLIVVVMSSRR 136 (181)
Q Consensus 107 -~~G-~~YFic~v-----~~HC~~GmKl~I~V~~~~~ 136 (181)
++| .||||++- ++-| ||+.|.|.....
T Consensus 132 F~pG~~YYyISTS~~~~~g~~C---lrLkV~V~p~~~ 165 (177)
T 2x11_B 132 FRPGREYFYISSAIPDNGRRSC---LKLKVFVRPTNS 165 (177)
T ss_dssp CCTTEEEEEEEEESSCCCSSSC---CEEEEEECCTTT
T ss_pred ccCCCeEEEEecCCCCCCCCcc---eEEEEEEEcCCC
Confidence 356 68999752 2346 999999987654
No 42
>1shx_A Ephrin-A5; ephrin signaling, hormone-growth factor complex; HET: NAG; 2.10A {Mus musculus} SCOP: b.6.1.5 PDB: 1shw_A* 3mx0_B*
Probab=96.09 E-value=0.011 Score=45.52 Aligned_cols=76 Identities=25% Similarity=0.458 Sum_probs=48.3
Q ss_pred CceecCCEEEee---eeC-------CCCeEEEEccccCCCCCCCCCc-ccc--c-----CCCcEEEec------------
Q 030240 57 TRFQVGDSLVWK---YDA-------TRDSVLQVTKEAYLSCNTSSPV-AEY--R-----DGNTKVKLN------------ 106 (181)
Q Consensus 57 ~~f~vGD~LvF~---y~~-------~~HsV~~V~~~~y~~C~~~~~~-~~~--s-----~G~~~v~L~------------ 106 (181)
..+++||.|-+- |+. ....+++|++++|+.|+..... ..+ + .++.++++.
T Consensus 23 i~V~i~D~lDIiCP~~~~~~~~~~~E~~~lY~Vs~~~y~~C~~~~~~~~~~~C~~P~~p~~~~kftikFq~fsP~p~G~E 102 (138)
T 1shx_A 23 IDVCINDYLDVFCPHYEDSVPEDKTERYVLYMVNFDGYSACDHTSKGFKRWECNRPHSPNGPLKFSEKFQLFTPFSLGFE 102 (138)
T ss_dssp EEECTTCEEEEECCCCCTTCCSTTCCCEEEEEECHHHHHTTCSSSSEEEEEEECCTTCTTSSCEEEEECCSCCSSTTCCC
T ss_pred EEecCCCEEEEECCCCCCCCCCCCceEEEEEEECHHHhccccCCCCCCEEEEeCCCCCCCCCeEEEEEEEEcCCCCCcee
Confidence 457799999774 331 2456789999999999876432 111 1 133333221
Q ss_pred -ccc-cEEEEeCC-----CCCCcCCCeEEEEeecCC
Q 030240 107 -KSG-PFYFISGT-----KGSCEKGQKLIVVVMSSR 135 (181)
Q Consensus 107 -~~G-~~YFic~v-----~~HC~~GmKl~I~V~~~~ 135 (181)
++| .||||++- ++-| |||.|.|....
T Consensus 103 F~pG~~YY~ISts~~~~~g~~C---lrL~V~V~p~~ 135 (138)
T 1shx_A 103 FRPGREYFYISSAIPDNGRRSC---LKLKVFVRPTN 135 (138)
T ss_dssp CCTTEEEEEEEEESSCCSCSCC---CEEEEEECCTT
T ss_pred ecCCCeEEEEEcCCCCCCCCce---eEEEEEEEccc
Confidence 356 68999752 2446 99999997654
No 43
>2dv6_A Nitrite reductase; electron transfer, reduction, denitrification, oxidoreductase; 2.20A {Hyphomicrobium denitrificans}
Probab=95.30 E-value=0.02 Score=50.32 Aligned_cols=75 Identities=13% Similarity=0.130 Sum_probs=51.9
Q ss_pred cCCceecCCEEEeeeeCC---CCeEEEEccccCCCCCCCCCcccccCCC---cEEEecccccEEEEeCCCCCCcCCCeEE
Q 030240 55 EKTRFQVGDSLVWKYDAT---RDSVLQVTKEAYLSCNTSSPVAEYRDGN---TKVKLNKSGPFYFISGTKGSCEKGQKLI 128 (181)
Q Consensus 55 ~~~~f~vGD~LvF~y~~~---~HsV~~V~~~~y~~C~~~~~~~~~s~G~---~~v~L~~~G~~YFic~v~~HC~~GmKl~ 128 (181)
...+++.||+|+|++.+. .|++..-.......|- ...|. ..|+++++|+|+|.|.+.+|=..||+..
T Consensus 55 p~i~v~~Gd~v~~~~~N~~~~~h~~~~~g~~~~~~~~-------i~pG~~~~~~f~~~~~Gt~~y~~~~~~h~~~Gm~G~ 127 (447)
T 2dv6_A 55 PTLVVHEGETVQVNLVNGEGAQHDVVVDQYAARSAIV-------NGKNASSTFSFVASKVGEFNYYCSIAGHRQAGMEGN 127 (447)
T ss_dssp CCEEEETTCEEEEEEECSSSSCBCCEETTTTEECCCB-------CSTTBEEEEEEECCSCEEEEEECCSTTHHHHTCEEE
T ss_pred CeEEEcCCCEEEEEEEcCCCCceEEEEccCCccccee-------cCCCCeEEEEEEcCCCEEEEEEeCCCChhhCCCEEE
Confidence 356889999999999753 3776432222112222 12332 3566688999999999999988899999
Q ss_pred EEeecCCC
Q 030240 129 VVVMSSRR 136 (181)
Q Consensus 129 I~V~~~~~ 136 (181)
|.|.....
T Consensus 128 i~V~~~~~ 135 (447)
T 2dv6_A 128 IQVLPGNR 135 (447)
T ss_dssp EEEESSCC
T ss_pred EEEeCCcc
Confidence 99987543
No 44
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=94.92 E-value=0.022 Score=53.13 Aligned_cols=68 Identities=7% Similarity=-0.007 Sum_probs=45.9
Q ss_pred CCceecCCEEEeeeeCC------CCeEEEEccccCCCCCCCCCcccccCCC---cEEEecccccEEEEeCC---CCCCcC
Q 030240 56 KTRFQVGDSLVWKYDAT------RDSVLQVTKEAYLSCNTSSPVAEYRDGN---TKVKLNKSGPFYFISGT---KGSCEK 123 (181)
Q Consensus 56 ~~~f~vGD~LvF~y~~~------~HsV~~V~~~~y~~C~~~~~~~~~s~G~---~~v~L~~~G~~YFic~v---~~HC~~ 123 (181)
..++..||++.|...+. .|++..-+. . .......|. ..|+.+++|.|||.|.. ..| .
T Consensus 514 ~I~V~~Gd~V~~~ltN~d~~~Dv~Hgf~ip~~-g--------v~~~i~PG~t~t~~Fta~~pGtY~yhC~e~Cg~~H--~ 582 (595)
T 1fwx_A 514 SFTVKEGDEVTVIVTNLDEIDDLTHGFTMGNY-G--------VAMEIGPQMTSSVTFVAANPGVYWYYCQWFCHALH--M 582 (595)
T ss_dssp EEEEETTCEEEEEEEECCCSTTCCEEEEETTT-T--------EEEEECTTCEEEEEEECCSCEEEEEECCSCCSTTC--T
T ss_pred EEEEECCCEEEEEEEeCCCCCCceeeEEecCC-C--------cceeeCCCCeEEEEEECCCCEEEEEECCCCCCCCc--c
Confidence 45788999999998752 466654221 1 001123343 36788999999999984 245 4
Q ss_pred CCeEEEEeecC
Q 030240 124 GQKLIVVVMSS 134 (181)
Q Consensus 124 GmKl~I~V~~~ 134 (181)
||+..|.|...
T Consensus 583 gM~G~IiV~p~ 593 (595)
T 1fwx_A 583 EMRGRMLVEPK 593 (595)
T ss_dssp TCEEEEEEECC
T ss_pred CCEEEEEEEcC
Confidence 99999999764
No 45
>3s8f_B Cytochrome C oxidase subunit 2; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 1ehk_B* 2qpd_B* 3qjq_B* 3qjr_B* 3qju_B* 3qjv_B* 1xme_B* 3s8g_B* 4esl_B* 4ev3_B* 4f05_B* 4fa7_B* 4faa_B* 3qjs_B* 3bvd_B* 2qpe_B* 3qjt_B* 3s3b_B* 3s33_B* 3s39_B* ...
Probab=94.86 E-value=0.047 Score=43.09 Aligned_cols=69 Identities=14% Similarity=0.174 Sum_probs=43.7
Q ss_pred cCCceecCCEEEeeeeCC--CCeEEEEccccCCCCCCCCCcccccCCC---cEEEecccccEEEEeCC-CCCCcCCCeEE
Q 030240 55 EKTRFQVGDSLVWKYDAT--RDSVLQVTKEAYLSCNTSSPVAEYRDGN---TKVKLNKSGPFYFISGT-KGSCEKGQKLI 128 (181)
Q Consensus 55 ~~~~f~vGD~LvF~y~~~--~HsV~~V~~~~y~~C~~~~~~~~~s~G~---~~v~L~~~G~~YFic~v-~~HC~~GmKl~ 128 (181)
+...+.+|+.++|..++. .|+...-+ + +-......|. ..++.+++|.||+.|+. -|+--.+|+..
T Consensus 93 n~l~VP~G~~Vr~~vTS~DViHsf~IP~---l------gik~da~PG~~n~~~~~~~kpG~y~g~Cse~CG~~Hs~M~g~ 163 (168)
T 3s8f_B 93 NPIEVPQGAEIVFKITSPDVIHGFHVEG---T------NINVEVLPGEVSTVRYTFKRPGEYRIICNQYCGLGHQNMFGT 163 (168)
T ss_dssp SSEEEETTSEEEEEEECSSSCEEEEETT---S------SCEEEECTTBCEEEEEECCSCEEEEEECCSCCSTTGGGCEEE
T ss_pred CEEEEeCCCeEEEEEecCCceEEEEECC---C------CeEEEecCCceeEEEEEeCCCEEEEEECCcCCCCCcCCCEEE
Confidence 345788899999988753 35543311 1 0111112333 46788999999999995 23333569999
Q ss_pred EEee
Q 030240 129 VVVM 132 (181)
Q Consensus 129 I~V~ 132 (181)
|.|.
T Consensus 164 V~V~ 167 (168)
T 3s8f_B 164 IVVK 167 (168)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9986
No 46
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=94.49 E-value=0.043 Score=51.49 Aligned_cols=67 Identities=12% Similarity=0.103 Sum_probs=45.8
Q ss_pred CCceecCCEEEeeeeCC------CCeEEEEccccCCCCCCCCCcccccCCC---cEEEecccccEEEEeCCCCCCcC---
Q 030240 56 KTRFQVGDSLVWKYDAT------RDSVLQVTKEAYLSCNTSSPVAEYRDGN---TKVKLNKSGPFYFISGTKGSCEK--- 123 (181)
Q Consensus 56 ~~~f~vGD~LvF~y~~~------~HsV~~V~~~~y~~C~~~~~~~~~s~G~---~~v~L~~~G~~YFic~v~~HC~~--- 123 (181)
..++.+||.+.|..++. .|++..-+ +. .......|. ..++.+++|.|||+|+. +|-.
T Consensus 559 eI~VP~GdtVrfiLTN~D~veDViHSF~IPs---lG------IK~DaiPGrtnsvtFtadkPGvY~y~CSE--~CGa~Hs 627 (638)
T 3sbq_A 559 EFTVKQGDEVTVTITNIDQIEDVSHGFVVVN---HG------VSMEISPQQTSSITFVADKPGLHWYYCSW--FCHALHM 627 (638)
T ss_dssp EEEEETTCEEEEEEEECCCSTTCCEEEEETT---TT------EEEEECTTCEEEEEEECCSCEEEEEECCS--CCSTTCT
T ss_pred EEEEecCceeEEEEecCCcCCCceeeeEecC---CC------ceeeeCCCCeEEEEEEcCCCEEEEEECCC--cCCCCcc
Confidence 56889999999998762 46665421 10 011123343 36788999999999996 5655
Q ss_pred CCeEEEEeec
Q 030240 124 GQKLIVVVMS 133 (181)
Q Consensus 124 GmKl~I~V~~ 133 (181)
+|+..|.|.+
T Consensus 628 ~M~G~ViVEP 637 (638)
T 3sbq_A 628 EMVGRMMVEP 637 (638)
T ss_dssp TCEEEEEEEC
T ss_pred cceEEEEEec
Confidence 4999999864
No 47
>2wo3_B Ephrin-A2; transferase-signaling protein complex, EFN, EPHA4, KINA ephrin, complex, membrane, cell surface receptor, tyrosine- kinase, glycoprotein; HET: NAG; 2.35A {Homo sapiens}
Probab=94.29 E-value=0.089 Score=41.30 Aligned_cols=76 Identities=25% Similarity=0.407 Sum_probs=46.3
Q ss_pred CceecCCEEEee---eeC--------CCCeEEEEccccCCCCCCCCCcc-cc------c-CCCcEEEec-----------
Q 030240 57 TRFQVGDSLVWK---YDA--------TRDSVLQVTKEAYLSCNTSSPVA-EY------R-DGNTKVKLN----------- 106 (181)
Q Consensus 57 ~~f~vGD~LvF~---y~~--------~~HsV~~V~~~~y~~C~~~~~~~-~~------s-~G~~~v~L~----------- 106 (181)
..+++||.|.+- |+. ....+++|++++|+.|+...... .+ . .++.++++.
T Consensus 32 i~V~i~D~LDIiCP~y~~~~~~~~~~E~y~LY~Vs~~~y~~C~~~~~~~~~~~C~~P~~p~~~~kftikFQ~fSP~p~G~ 111 (157)
T 2wo3_B 32 VEVSINDYLDIYCPHYGAPLPPAERMEHYVLYMVNGEGHASCDHRQRGFKRWECNRPAAPGGPLKFSEKFQLFTPFSLGF 111 (157)
T ss_dssp EEECTTCEEEEECCCCCSSCCCGGGSCCEEEEEECHHHHHHTCCTTSEEEEEEECCTTCTTSSCEEEEECCSSCSSTTSC
T ss_pred EEeccCCEEEEECCCCCCCCCCCCCceEEEEEEECHHHhccccCCCCCCEEEEeCCCCCCCCCeEEEEEEEECCCCCCCe
Confidence 457799999775 321 12347899999999998865321 11 1 122222211
Q ss_pred --ccc-cEEEEeCC-----CCCCcCCCeEEEEeecCC
Q 030240 107 --KSG-PFYFISGT-----KGSCEKGQKLIVVVMSSR 135 (181)
Q Consensus 107 --~~G-~~YFic~v-----~~HC~~GmKl~I~V~~~~ 135 (181)
++| .||||++- ++-| |||.|.|....
T Consensus 112 EF~pG~~YY~ISTS~g~~~gg~C---~rlkV~V~~~~ 145 (157)
T 2wo3_B 112 EFRPGHEYYYISATPPNAVDRPC---LRLKVYVRPTQ 145 (157)
T ss_dssp CCCTTCEEEEEEECTTCSCCTTC---CEEEEEECCCC
T ss_pred eeeCCCeEEEEEecCCCCCCCcc---eeEEEEEEcCC
Confidence 356 69999863 2456 57888876654
No 48
>3hei_B Ephrin-A1; EPH receptor tyrosine kinase, cell membrane, disulfi glycoprotein, GPI-anchor, lipoprotein, membrane, ATP-bindin kinase; 2.00A {Homo sapiens} SCOP: b.6.1.0
Probab=91.90 E-value=0.2 Score=38.22 Aligned_cols=35 Identities=23% Similarity=0.347 Sum_probs=25.7
Q ss_pred CceecCCEEEee---eeC--------CCCeEEEEccccCCCCCCCC
Q 030240 57 TRFQVGDSLVWK---YDA--------TRDSVLQVTKEAYLSCNTSS 91 (181)
Q Consensus 57 ~~f~vGD~LvF~---y~~--------~~HsV~~V~~~~y~~C~~~~ 91 (181)
..+++||.|-+- |+. ....++.|++++|++|+...
T Consensus 22 v~V~i~D~LDIiCP~y~~~~~~~~~~E~y~LY~Vs~~~y~~C~~~~ 67 (132)
T 3hei_B 22 IHVQLNDYVDIICPHYEDHSVADAAMEQYILYLVEHEEYQLCQPQS 67 (132)
T ss_dssp EEECTTCEEEEECCCCCTTSSCGGGCCCEEEEEECHHHHHHTCCSC
T ss_pred EEeCCCCeEEEECCCCCCCCCCCCCccEEEEEEeCHHHhccccCCC
Confidence 456799999763 322 23567899999999998765
No 49
>1mzy_A Copper-containing nitrite reductase; mutant M182T, gating mechanism, electron oxidoreductase; 1.46A {Rhodobacter sphaeroides} SCOP: b.6.1.3 b.6.1.3 PDB: 1mzz_A 1n70_A 1zv2_A 2a3t_A 2dws_A 2dwt_A 2dy2_A
Probab=85.04 E-value=1.1 Score=37.65 Aligned_cols=75 Identities=13% Similarity=0.180 Sum_probs=47.3
Q ss_pred CceecCCEEEeeeeCC-----CCeEEEEccccCCCCCCCCCcccccCCC---cEEEecccccEEEEeCCCC-----CCcC
Q 030240 57 TRFQVGDSLVWKYDAT-----RDSVLQVTKEAYLSCNTSSPVAEYRDGN---TKVKLNKSGPFYFISGTKG-----SCEK 123 (181)
Q Consensus 57 ~~f~vGD~LvF~y~~~-----~HsV~~V~~~~y~~C~~~~~~~~~s~G~---~~v~L~~~G~~YFic~v~~-----HC~~ 123 (181)
.+++.||+|++++.+. -|.+..-.....+.- ........|. ..|+.+++|++||-|...+ |=..
T Consensus 66 i~~~~Gd~v~v~~~N~~~~~h~Hg~~~~~~~~~~~~---~~~~~i~PG~~~~y~f~~~~~Gt~~yH~h~~~~~~~~~~~~ 142 (333)
T 1mzy_A 66 MIVHEGDYVELTLINPPENTMPHNIDFHAATGALGG---GGLTLINPGEKVVLRFKATRAGAFVYHCAPGGPMIPWHVVS 142 (333)
T ss_dssp EEEETTCEEEEEEEECTTCCSCBCCEETTSCSGGGG---GGGCCBCTTEEEEEEEECCSCEEEEEECCCSTTHHHHHHHT
T ss_pred EEecCCCEEEEEEEECCCCcccccceecCCCCCCCC---CceeEeCCCCEEEEEEECCCCEEEEEeecCCcccchhhhhC
Confidence 4678999999998764 366543211111100 0111123443 2677789999999998864 6678
Q ss_pred CCeEEEEeecC
Q 030240 124 GQKLIVVVMSS 134 (181)
Q Consensus 124 GmKl~I~V~~~ 134 (181)
||...+.|...
T Consensus 143 Gl~G~~iV~~~ 153 (333)
T 1mzy_A 143 GMAGCIMVLPR 153 (333)
T ss_dssp TCEEEEEEECT
T ss_pred CCEEEEEEccC
Confidence 99998888754
No 50
>1oe1_A Dissimilatory copper-containing nitrite reductase; denitrification; HET: PG4; 1.04A {Alcaligenes xylosoxidans} SCOP: b.6.1.3 b.6.1.3 PDB: 1oe3_A* 2xwz_A* 2vn3_A 2zon_A* 1haw_A 1hau_A* 2vm4_A* 2vw4_A* 2vw6_A* 2vw7_A* 2vm3_A* 1oe2_A* 2jl0_A* 2xx1_A 2xxg_A* 2xxf_A* 1gs8_A 1wa1_X* 1wa2_X* 2jl3_A* ...
Probab=84.17 E-value=1.3 Score=37.22 Aligned_cols=76 Identities=16% Similarity=0.227 Sum_probs=47.2
Q ss_pred CceecCCEEEeeeeCC-----CCeEEEEccccCCCCCCCCCcccccCCC---cEEEecccccEEEEeCCCC----CCcCC
Q 030240 57 TRFQVGDSLVWKYDAT-----RDSVLQVTKEAYLSCNTSSPVAEYRDGN---TKVKLNKSGPFYFISGTKG----SCEKG 124 (181)
Q Consensus 57 ~~f~vGD~LvF~y~~~-----~HsV~~V~~~~y~~C~~~~~~~~~s~G~---~~v~L~~~G~~YFic~v~~----HC~~G 124 (181)
.+++.||+|++++.+. .|++..-.....+ + ..+......|. ..++.+++|++||-|...+ |=..|
T Consensus 67 i~v~~Gd~v~v~~~N~~~~~~~h~~~~h~~~~~~--~-~~~~~~i~pG~~~~y~f~~~~~Gt~~yH~h~~~~~~~~~~~G 143 (336)
T 1oe1_A 67 LVVHEGDYVQLTLVNPATNAMPHNVDFHGATGAL--G-GAKLTNVNPGEQATLRFKADRSGTFVYHCAPEGMVPWHVVSG 143 (336)
T ss_dssp EEEETTCEEEEEEEECTTCCSCBCCEETTSCSGG--G-GGGGCCBCTTEEEEEEEECCSCEEEEEECCCTTCHHHHHHTT
T ss_pred EEEcCCCEEEEEEEcCCCCCccccceECCCCCCC--C-CcceEEeCCCCEEEEEEECCCCeEEEEecCCCCchhHHHhCC
Confidence 4678999999998763 4665432110000 0 01111133443 2567789999999999754 45689
Q ss_pred CeEEEEeecCC
Q 030240 125 QKLIVVVMSSR 135 (181)
Q Consensus 125 mKl~I~V~~~~ 135 (181)
|...+.|....
T Consensus 144 l~G~liV~~~~ 154 (336)
T 1oe1_A 144 MSGTLMVLPRD 154 (336)
T ss_dssp CEEEEEEECTT
T ss_pred CeEEEEEecCc
Confidence 99999887643
No 51
>1kbv_A ANIA, major outer membrane protein PAN 1; ANIA[NO2-], oxidoreductase; 1.95A {Neisseria gonorrhoeae} SCOP: b.6.1.3 b.6.1.3 PDB: 1kbw_A
Probab=81.16 E-value=1.4 Score=37.11 Aligned_cols=75 Identities=12% Similarity=0.131 Sum_probs=45.3
Q ss_pred CceecCCEEEeeeeCC-----CCeEEEEccccCCCCCCCCCcccccCCC---cEEEecccccEEEEeCCC---CCCcCCC
Q 030240 57 TRFQVGDSLVWKYDAT-----RDSVLQVTKEAYLSCNTSSPVAEYRDGN---TKVKLNKSGPFYFISGTK---GSCEKGQ 125 (181)
Q Consensus 57 ~~f~vGD~LvF~y~~~-----~HsV~~V~~~~y~~C~~~~~~~~~s~G~---~~v~L~~~G~~YFic~v~---~HC~~Gm 125 (181)
.+++.||++++++.+. .|++..=-....+. .. . ......|. ..++.+++|++||-|... .|=..||
T Consensus 72 i~v~~Gd~v~v~~~N~~~~~~~~~ih~HG~~~~dG-~~-~-~~~i~PG~~~~y~f~~~~~Gt~wyH~h~~~~~~~~~~Gl 148 (327)
T 1kbv_A 72 IRVREGDTVEVEFSNNPSSTVPHNVDFHAATGQGG-GA-A-ATFTAPGRTSTFSFKALQPGLYIYHCAVAPVGMHIANGM 148 (327)
T ss_dssp EEEETTCEEEEEEEECTTCSSCBCCEETTCCSGGG-GT-T-TTCBCTTEEEEEEEECCSCEEEEEECCCSSHHHHHHTTC
T ss_pred EEEeCCCEEEEEEEECCCCCCceeeEeCccccCCC-CC-c-ceeecCCCEEEEEEECCCCeEEEEEeCCCChhhhhhcce
Confidence 5688999999998754 35553210000010 00 0 01123343 256678899999999763 3556799
Q ss_pred eEEEEeecC
Q 030240 126 KLIVVVMSS 134 (181)
Q Consensus 126 Kl~I~V~~~ 134 (181)
...|.|...
T Consensus 149 ~G~~iV~~~ 157 (327)
T 1kbv_A 149 YGLILVEPK 157 (327)
T ss_dssp EEEEEEECT
T ss_pred EEEEEEecC
Confidence 999998764
No 52
>2zoo_A Probable nitrite reductase; electron transfer, electron transport, heme, iron, binding, oxidoreductase, transport; HET: SUC HEM; 1.95A {Pseudoalteromonas haloplanktis}
Probab=79.66 E-value=1.1 Score=39.02 Aligned_cols=75 Identities=11% Similarity=0.114 Sum_probs=45.3
Q ss_pred CceecCCEEEeeeeCC-----CCeEEEEccccCCCCCCCCCcccccCCC---cEEEecccccEEEEeC---CCCCCcCCC
Q 030240 57 TRFQVGDSLVWKYDAT-----RDSVLQVTKEAYLSCNTSSPVAEYRDGN---TKVKLNKSGPFYFISG---TKGSCEKGQ 125 (181)
Q Consensus 57 ~~f~vGD~LvF~y~~~-----~HsV~~V~~~~y~~C~~~~~~~~~s~G~---~~v~L~~~G~~YFic~---v~~HC~~Gm 125 (181)
.+++.||++++++.+. .|++..=-....+. .........|. .+|+.+++|++||-|- ...|=..||
T Consensus 62 i~v~~Gd~v~v~~~N~l~~~~~~~iH~HG~~~~dG---~~~~~~i~pg~~~~y~f~~~~~Gt~~yH~H~~~~~~~~~~Gl 138 (442)
T 2zoo_A 62 IRVREGDEIEFNLSNHPSSKMPHNIDLHAVTGPGG---GAESSFTAPGHTSTFNFKALNPGLYIYHCATAPVGMHIANGM 138 (442)
T ss_dssp EEEETTCEEEEEEEECTTCSSCBCCEETTCCSGGG---GGGGCCBCTTCEEEEEEECCSCEEEEEECCCSSHHHHHHTTC
T ss_pred EEEeCCCEEEEEEEECCCCCCCCCEEecCCcCCCC---CCccEEECCCCEEEEEEEcCCCeEEEEecCCCChHHHHhCcc
Confidence 4678999999998764 45554210000000 00001123343 2567788999999994 345667899
Q ss_pred eEEEEeecC
Q 030240 126 KLIVVVMSS 134 (181)
Q Consensus 126 Kl~I~V~~~ 134 (181)
...+.|...
T Consensus 139 ~G~~iv~~~ 147 (442)
T 2zoo_A 139 YGLILVEPK 147 (442)
T ss_dssp EEEEEEECT
T ss_pred EEEEEEeCC
Confidence 988888754
No 53
>3kw8_A Laccase, putative copper oxidase; two-domain laccase, oxidoreductase, multicopper blue protein; HET: PG4 PGE; 2.29A {Streptomyces coelicolor} PDB: 4gxf_A* 4gy4_A*
Probab=79.09 E-value=2.7 Score=34.50 Aligned_cols=81 Identities=9% Similarity=0.072 Sum_probs=48.8
Q ss_pred CceecCCEEEeeeeC---CCCeEEE------Eccc-cCCCCCCCCC-cc--cccCCC-c--EEEec---ccccEEEEeCC
Q 030240 57 TRFQVGDSLVWKYDA---TRDSVLQ------VTKE-AYLSCNTSSP-VA--EYRDGN-T--KVKLN---KSGPFYFISGT 117 (181)
Q Consensus 57 ~~f~vGD~LvF~y~~---~~HsV~~------V~~~-~y~~C~~~~~-~~--~~s~G~-~--~v~L~---~~G~~YFic~v 117 (181)
.+++.||++++.+.+ ..|.+.. +... .++.-..... .. ....|. . .+..+ ++|.++|-|-+
T Consensus 170 i~v~~G~~vri~l~N~~~~~Hp~HlHG~~f~v~~~G~~~~p~~~~~~~Dtv~v~pg~~~~~~~~~~~~~npG~w~~HCH~ 249 (276)
T 3kw8_A 170 FEATVGDRVEIVMITHGEYYHTFHMHGHRWADNRTGILTGPDDPSRVIDNKITGPADSFGFQIIAGEGVGAGAWMYHCHV 249 (276)
T ss_dssp EEEETTCEEEEEEEEESSCCEEEEETTCCEESSSSSSCCSTTCCCCEESEEEECTTCEEEEEEETTTTTCSEEEEEEECS
T ss_pred EEEecCCEEEEEEecCCCcceeEEEccceeEEeccCccCCCcccccCCccEEeCCCceEEEEEEeccCCCCCeEEEECCC
Confidence 578899999998864 2455532 2111 1110000000 00 012232 2 34444 58999999999
Q ss_pred CCCCcCCCeEEEEeecCCCC
Q 030240 118 KGSCEKGQKLIVVVMSSRRR 137 (181)
Q Consensus 118 ~~HC~~GmKl~I~V~~~~~~ 137 (181)
..|=+.||...+.|.....+
T Consensus 250 ~~H~~~GM~g~~~V~~~~~~ 269 (276)
T 3kw8_A 250 QSHSDMGMVGLFLVKKPDGT 269 (276)
T ss_dssp HHHHHTTCEEEEEEECTTSC
T ss_pred chHhhCCCeEEEEEeCCCCC
Confidence 99999999999999887653
No 54
>2bw4_A Copper-containing nitrite reductase; oxidoreductase, denitrification, catalysis, enzyme mechanism, nitrate assimilation; 0.90A {Achromobacter cycloclastes} SCOP: b.6.1.3 b.6.1.3 PDB: 1nib_A 1nia_A 1nid_A 1nie_A 1nic_A 1nif_A 2bw5_A 2bwd_A 2bwi_A 2nrd_A 2y1a_A 1kcb_A 1rzp_A* 1rzq_A 2avf_A 1as6_A 1aq8_A 1as7_A 1as8_A 2afn_A ...
Probab=73.59 E-value=4 Score=34.23 Aligned_cols=76 Identities=13% Similarity=0.201 Sum_probs=46.9
Q ss_pred CceecCCEEEeeeeCC-----CCeEEEEccccCCCCCCCCCcccccCCC---cEEEecccccEEEEeCCCC----CCcCC
Q 030240 57 TRFQVGDSLVWKYDAT-----RDSVLQVTKEAYLSCNTSSPVAEYRDGN---TKVKLNKSGPFYFISGTKG----SCEKG 124 (181)
Q Consensus 57 ~~f~vGD~LvF~y~~~-----~HsV~~V~~~~y~~C~~~~~~~~~s~G~---~~v~L~~~G~~YFic~v~~----HC~~G 124 (181)
.+++.||++++++.+. .|.+..-.....+ +. .+......|. ..++++++|++||-|...+ |=..|
T Consensus 73 i~v~~Gd~v~v~~~N~~~~~~~hg~~~~~~~~~~--~~-~~~~~i~PG~~~~y~~~~~~~Gt~wyH~h~~~~~~~~~~~G 149 (340)
T 2bw4_A 73 MVVHENDYVELRLINPDTNTLLHNIDFHAATGAL--GG-GALTQVNPGEETTLRFKATKPGVFVYHCAPEGMVPWHVTSG 149 (340)
T ss_dssp EEEETTCEEEEEEEECTTCCSCBCCEETTSCSGG--GG-GGGCCBCTTEEEEEEEECCSCEEEEEECCCTTCHHHHHHTT
T ss_pred EEEcCCCEEEEEEEeCCCCCccCcceeCCcCCCC--CC-ccceEeCCCCEEEEEEECCCCeEEEEEcCCCCchhhHHhCc
Confidence 4578999999999764 3555432110000 00 1111123443 2577788999999999764 56689
Q ss_pred CeEEEEeecCC
Q 030240 125 QKLIVVVMSSR 135 (181)
Q Consensus 125 mKl~I~V~~~~ 135 (181)
|...+.|....
T Consensus 150 l~G~~iV~~~~ 160 (340)
T 2bw4_A 150 MNGAIMVLPRD 160 (340)
T ss_dssp CEEEEEEECTB
T ss_pred CEEEEEEccCc
Confidence 98888887643
No 55
>1oe1_A Dissimilatory copper-containing nitrite reductase; denitrification; HET: PG4; 1.04A {Alcaligenes xylosoxidans} SCOP: b.6.1.3 b.6.1.3 PDB: 1oe3_A* 2xwz_A* 2vn3_A 2zon_A* 1haw_A 1hau_A* 2vm4_A* 2vw4_A* 2vw6_A* 2vw7_A* 2vm3_A* 1oe2_A* 2jl0_A* 2xx1_A 2xxg_A* 2xxf_A* 1gs8_A 1wa1_X* 1wa2_X* 2jl3_A* ...
Probab=72.85 E-value=3.3 Score=34.69 Aligned_cols=36 Identities=11% Similarity=0.131 Sum_probs=30.7
Q ss_pred EEEecccccEEEEeCCCCCC-cCCCeEEEEeecCCCC
Q 030240 102 KVKLNKSGPFYFISGTKGSC-EKGQKLIVVVMSSRRR 137 (181)
Q Consensus 102 ~v~L~~~G~~YFic~v~~HC-~~GmKl~I~V~~~~~~ 137 (181)
.++.+++|.|+|.|....|+ +.||...++|.....+
T Consensus 286 lv~~~~pG~y~~~~h~~~~~~~~G~~~~~~V~~~~~~ 322 (336)
T 1oe1_A 286 LYTFKQPGVYAYLNHNLIEAFELGAAGHIKVEGKWND 322 (336)
T ss_dssp EEECCSCEEEEEEESSHHHHHTTSCEEEEEEESCCCT
T ss_pred EEEcCCCceEEEEechhhccccCCCeEEEEECCCCCh
Confidence 56778899999999988898 8999999999876543
No 56
>1fft_B Ubiquinol oxidase; electron transport, cytochrome oxidase, membrane protein, oxidoreductase; HET: HEM HEO; 3.50A {Escherichia coli} SCOP: b.6.1.2 f.17.2.1
Probab=67.99 E-value=14 Score=31.51 Aligned_cols=65 Identities=15% Similarity=0.169 Sum_probs=42.1
Q ss_pred CCceecCCEEEeeeeCC--CCeEEEEccccCCCCCCCCCcc-cccCCC---cEEEecccccEEEEeCCCCCCcC---CCe
Q 030240 56 KTRFQVGDSLVWKYDAT--RDSVLQVTKEAYLSCNTSSPVA-EYRDGN---TKVKLNKSGPFYFISGTKGSCEK---GQK 126 (181)
Q Consensus 56 ~~~f~vGD~LvF~y~~~--~HsV~~V~~~~y~~C~~~~~~~-~~s~G~---~~v~L~~~G~~YFic~v~~HC~~---GmK 126 (181)
...+-+|..++|.-++. -|+...-+. .++ .--.|. ..++.+++|.||..|+. .|-. .|+
T Consensus 152 ~l~lP~g~~V~~~lTS~DViHsf~IP~l----------g~k~DaiPGr~n~~~~~~~~~G~y~g~CsE--~CG~~Hs~M~ 219 (315)
T 1fft_B 152 EIAFPANTPVYFKVTSNSVMNSFFIPRL----------GSQIYAMAGMQTRLHLIANEPGTYDGISAS--YSGPGFSGMK 219 (315)
T ss_dssp BCCCCSSSEEEEEECBSSSCEEEEEGGG----------TEEEEECBTSCEEEEEECCSCBCCEEBCCS--CCSTTTTTCC
T ss_pred eEEEeCCCEEEEEEEeCCccceeeeccc----------CcEEeecCCcceeeEEecCCCeEEEEeccc--cchhhHHhcc
Confidence 35677899999998753 344433111 111 112232 36788999999999984 6765 489
Q ss_pred EEEEee
Q 030240 127 LIVVVM 132 (181)
Q Consensus 127 l~I~V~ 132 (181)
+.|.|.
T Consensus 220 ~~v~vv 225 (315)
T 1fft_B 220 FKAIAT 225 (315)
T ss_dssp EECCBC
T ss_pred ceEEEe
Confidence 998887
No 57
>3cg8_A Laccase; oxidoreductase, multicopper blue protein; HET: PG4; 2.68A {Streptomyces coelicolor}
Probab=67.84 E-value=6.8 Score=33.31 Aligned_cols=79 Identities=9% Similarity=0.075 Sum_probs=48.8
Q ss_pred CceecCCEEEeeeeC---CCCeEEE------Eccc-cCCCCCCCCC-c--c--cccCCC-c--EEEe---cccccEEEEe
Q 030240 57 TRFQVGDSLVWKYDA---TRDSVLQ------VTKE-AYLSCNTSSP-V--A--EYRDGN-T--KVKL---NKSGPFYFIS 115 (181)
Q Consensus 57 ~~f~vGD~LvF~y~~---~~HsV~~------V~~~-~y~~C~~~~~-~--~--~~s~G~-~--~v~L---~~~G~~YFic 115 (181)
.+++.||++++.+.+ ..|.+.. +... .+. ...++ . . ....|. . .++. +++|.++|-|
T Consensus 211 l~v~~Ge~vri~l~N~g~~~HpfHlHGh~f~v~~~G~~~--~p~~~~~~~Dtv~v~PG~~~~v~~~~~~~~~pG~w~~HC 288 (343)
T 3cg8_A 211 FEATVGDRVEIVMITHGEYYHTFHMHGHRWADNRTGILT--GPDDPSRVIDNKITGPADSFGFQIIAGEGVGAGAWMYHC 288 (343)
T ss_dssp EEEETTCEEEEEEEEESSCCEEEEETTCCEESSSSSSCC--STTCCCCEESEEEECTTCEEEEEEETTTTTCSEEEEEEE
T ss_pred EEeCCCCEEEEEEEcCCccccccEecCcEEEEeccCccc--CCCCcccceeeEEeCCCCEEEEEEEECCCCCCeeEEEeC
Confidence 578899999998864 3566532 2111 111 00000 0 0 112333 2 3442 5799999999
Q ss_pred CCCCCCcCCCeEEEEeecCCCC
Q 030240 116 GTKGSCEKGQKLIVVVMSSRRR 137 (181)
Q Consensus 116 ~v~~HC~~GmKl~I~V~~~~~~ 137 (181)
-+..|=+.||...+.|......
T Consensus 289 Hi~~H~~~GM~g~~~V~~~~~~ 310 (343)
T 3cg8_A 289 HVQSHSDMGMVGLFLVKKPDGT 310 (343)
T ss_dssp CSHHHHHTTCEEEEEEECTTSC
T ss_pred CCHHHHhccCcEEEEEecCCCC
Confidence 9999999999999999876553
No 58
>3gdc_A Multicopper oxidase; beta sandwich, plasmid, oxidoreductase; 1.80A {Arthrobacter SP}
Probab=67.82 E-value=8.4 Score=31.72 Aligned_cols=79 Identities=10% Similarity=0.067 Sum_probs=46.9
Q ss_pred CceecCCEEEeeeeCC---CCeEEEE--ccccCCCCCCCCCcccccCCC---cEEEecccccEEEEeCCC---CCCcCCC
Q 030240 57 TRFQVGDSLVWKYDAT---RDSVLQV--TKEAYLSCNTSSPVAEYRDGN---TKVKLNKSGPFYFISGTK---GSCEKGQ 125 (181)
Q Consensus 57 ~~f~vGD~LvF~y~~~---~HsV~~V--~~~~y~~C~~~~~~~~~s~G~---~~v~L~~~G~~YFic~v~---~HC~~Gm 125 (181)
.+++.||+|+.++.+. .|++..= .....|.= ..........|. .+++.+++|++||-|-.. .|=..||
T Consensus 68 i~~~~Gd~v~v~~~N~~~~~~~iH~HG~~~~~~DG~-p~~~~~~i~PG~~~~y~f~~~~~Gt~~yH~H~~~~~~~~~~Gl 146 (288)
T 3gdc_A 68 LWAREGDALRIHFTNAGAHPHTIHFHGVHRATMDGT-PGIGAGSIAPGQSFTYEFDATPFGTHLYHCHQSPLAPHIAKGL 146 (288)
T ss_dssp EEEETTCEEEEEEEECSSSCBCCEESSCCCGGGSCC-TTSTTCSBCTTCEEEEEEECCSCEEEEEECCCSSHHHHHHTTC
T ss_pred EEEeCCCEEEEEEEeCCCCcccEEeccccccccCCC-CCccceeECCCCEEEEEEEcCCCccEEEEecCcchHHHHhCcC
Confidence 4678999999998753 3444321 10111100 000001123343 267778999999999876 3566899
Q ss_pred eEEEEeecCCC
Q 030240 126 KLIVVVMSSRR 136 (181)
Q Consensus 126 Kl~I~V~~~~~ 136 (181)
.-.|.|.....
T Consensus 147 ~G~liV~~~~~ 157 (288)
T 3gdc_A 147 YGGFIVEPKEG 157 (288)
T ss_dssp EEEEEEECSSC
T ss_pred eEEEEEeCCcc
Confidence 98888876543
No 59
>3iuw_A Activating signal cointegrator; NP_814290.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative; HET: MSE; 1.58A {Enterococcus faecalis V583}
Probab=66.24 E-value=2.9 Score=29.28 Aligned_cols=17 Identities=41% Similarity=0.671 Sum_probs=12.9
Q ss_pred CCceecCCEEEee-eeCC
Q 030240 56 KTRFQVGDSLVWK-YDAT 72 (181)
Q Consensus 56 ~~~f~vGD~LvF~-y~~~ 72 (181)
++.|++||.|+|+ |+.+
T Consensus 35 Dr~~~vGD~l~l~E~~~g 52 (83)
T 3iuw_A 35 DRNFQVGDILILEEYMNG 52 (83)
T ss_dssp CSCCCTTCEEEEEEEETT
T ss_pred ccCCCCCCEEEEEEccCC
Confidence 3569999999995 6544
No 60
>1mzy_A Copper-containing nitrite reductase; mutant M182T, gating mechanism, electron oxidoreductase; 1.46A {Rhodobacter sphaeroides} SCOP: b.6.1.3 b.6.1.3 PDB: 1mzz_A 1n70_A 1zv2_A 2a3t_A 2dws_A 2dwt_A 2dy2_A
Probab=58.93 E-value=8.2 Score=32.25 Aligned_cols=35 Identities=17% Similarity=0.220 Sum_probs=30.3
Q ss_pred EEEecccccEEEEeCCCCCC-cCCCeEEEEeecCCC
Q 030240 102 KVKLNKSGPFYFISGTKGSC-EKGQKLIVVVMSSRR 136 (181)
Q Consensus 102 ~v~L~~~G~~YFic~v~~HC-~~GmKl~I~V~~~~~ 136 (181)
.++.+++|.|+|.|-...|+ +.||.-.++|.....
T Consensus 286 ~v~a~~pG~y~~~ch~~~h~~~~Gm~~~~~v~~~~~ 321 (333)
T 1mzy_A 286 LYKFLQPGVYAYVNHNLIEAVHKGATAHVLVEGEWD 321 (333)
T ss_dssp EEECCSCEEEEEEESSHHHHHTTCCEEEEEEESCCC
T ss_pred EEEcCCCEEEEEecChhhhHhhCCCEEEEEEcCCCC
Confidence 56778899999999999999 999999999987543
No 61
>1cyx_A CYOA; electron transport; 2.30A {Escherichia coli} SCOP: b.6.1.2 PDB: 1cyw_A
Probab=56.07 E-value=11 Score=30.56 Aligned_cols=64 Identities=16% Similarity=0.197 Sum_probs=40.3
Q ss_pred CceecCCEEEeeeeCC--CCeEEEEccccCCCCCCCCCccc-ccCCC---cEEEecccccEEEEeCCCCCCcC---CCeE
Q 030240 57 TRFQVGDSLVWKYDAT--RDSVLQVTKEAYLSCNTSSPVAE-YRDGN---TKVKLNKSGPFYFISGTKGSCEK---GQKL 127 (181)
Q Consensus 57 ~~f~vGD~LvF~y~~~--~HsV~~V~~~~y~~C~~~~~~~~-~s~G~---~~v~L~~~G~~YFic~v~~HC~~---GmKl 127 (181)
..+-+|+.+.|.-++. -|+...-+. .++. --.|. ..++.+++|.||..|+. -|-. .|++
T Consensus 43 l~lP~g~~V~~~lTS~DViHSF~IP~l----------gvK~daiPGr~n~l~~~~~~pG~y~g~CsE--~CG~~Hs~M~~ 110 (205)
T 1cyx_A 43 IAFPANTPVYFKVTSNSVMHSFFIPRL----------GSQIYAMAGMQTRLHLIANEPGTYDGICAE--ICGPGHSGMKF 110 (205)
T ss_dssp EEEETTSCEEEEEEESSSCEEEEEGGG----------TEEEEECTTCCEEEEECCSSSEEEEEEECS--CCSTTSTTCCE
T ss_pred EEEeCCCEEEEEEecCCceeeEEeccc----------CcEEEecCCceEEEEEEeCCCeEEEEEccc--ccccchhhceE
Confidence 4566888888888652 344433111 1111 12232 35678899999999994 6665 4999
Q ss_pred EEEee
Q 030240 128 IVVVM 132 (181)
Q Consensus 128 ~I~V~ 132 (181)
.|.|.
T Consensus 111 ~v~vv 115 (205)
T 1cyx_A 111 KAIAT 115 (205)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99988
No 62
>3l6w_A Hemocyanin 1; cupredoxin domain, copper-binding protein, metal-binding, oxygen binding; 4.00A {Megathura crenulata} PDB: 3qjo_A
Probab=55.08 E-value=8.2 Score=35.19 Aligned_cols=74 Identities=15% Similarity=0.331 Sum_probs=45.7
Q ss_pred CceecCCEEEeeeeCCC--CeEEEE-ccccCCCCCCCCCc-ccccCCCcEEEecccccEEEEeCCCCCCcCCC-eEEEEe
Q 030240 57 TRFQVGDSLVWKYDATR--DSVLQV-TKEAYLSCNTSSPV-AEYRDGNTKVKLNKSGPFYFISGTKGSCEKGQ-KLIVVV 131 (181)
Q Consensus 57 ~~f~vGD~LvF~y~~~~--HsV~~V-~~~~y~~C~~~~~~-~~~s~G~~~v~L~~~G~~YFic~v~~HC~~Gm-Kl~I~V 131 (181)
.-++.|-.|.|.=-... .-++.+ +.++...|...--. ..|.-| ....| ++|.|||..+...-|++|- |+.|.|
T Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (491)
T 3l6w_A 413 VVVKRGTKIMFMSVDEAVTTPMLNLGSYTAMFKCKVPPFSFHAFELG-KMYSV-ESGDYFMTASTTELCNDNNLRIHVHV 490 (491)
T ss_pred eEeecCCEEEEEecccchhhHHHhhhhhhhhhccccCCCccCccccc-ceEec-CCCceEecCChHHHHhCCceeEEEEe
Confidence 35677888887543221 112222 44555668875322 112222 23344 5899999999999999998 999987
Q ss_pred e
Q 030240 132 M 132 (181)
Q Consensus 132 ~ 132 (181)
.
T Consensus 491 ~ 491 (491)
T 3l6w_A 491 D 491 (491)
T ss_pred C
Confidence 4
No 63
>4i1k_A B3 domain-containing transcription factor VRN1; B3 domain beta-barrel, DNA binding protein; 1.60A {Arabidopsis thaliana}
Probab=54.60 E-value=3 Score=31.64 Aligned_cols=28 Identities=32% Similarity=0.453 Sum_probs=19.8
Q ss_pred hcccCCceecCCEEEeeeeCCCCeEEEE
Q 030240 52 QWAEKTRFQVGDSLVWKYDATRDSVLQV 79 (181)
Q Consensus 52 ~WA~~~~f~vGD~LvF~y~~~~HsV~~V 79 (181)
+-+..+.+++||.++|++.....-+++|
T Consensus 110 ~Fv~dn~L~~GD~cvFeli~~~~~~f~V 137 (146)
T 4i1k_A 110 EFTLENNLGEGDVCVFELLRTRDFVLKV 137 (146)
T ss_dssp HHHHHTTCCTTCEEEEEECSSSSCEEEE
T ss_pred HHHHHcCCCCCCEEEEEEecCCceEEEE
Confidence 3446789999999999998643224444
No 64
>3hb3_B Cytochrome C oxidase subunit 2; electron transfer, proton transfer, proton pumping, membrane protein, cell inner membrane, cell membrane, copper; HET: HEA LDA LMT; 2.25A {Paracoccus denitrificans} PDB: 1ar1_B* 3ehb_B* 1qle_B*
Probab=54.22 E-value=9.9 Score=32.32 Aligned_cols=31 Identities=13% Similarity=0.252 Sum_probs=25.6
Q ss_pred EEEecccccEEEEeCCCCCCcC---CCeEEEEeecC
Q 030240 102 KVKLNKSGPFYFISGTKGSCEK---GQKLIVVVMSS 134 (181)
Q Consensus 102 ~v~L~~~G~~YFic~v~~HC~~---GmKl~I~V~~~ 134 (181)
.++.+++|.||..|+. -|.. .|++.|.|.+.
T Consensus 232 ~~~~~~~G~y~g~CsE--~CG~~Hs~M~~~v~vvs~ 265 (298)
T 3hb3_B 232 WFSVDQEGVYFGQCSE--LCGINHAYMPIVVKAVSQ 265 (298)
T ss_dssp EEECSSSEEEEECCCS--CCSTTTTSCCEEEEEECH
T ss_pred EEEeCCCEEEEEEccc--ccCcCccCCeeEEEEEcH
Confidence 6788999999999995 5664 49999998864
No 65
>2zwn_A Two-domain type laccase; muticopper oxidase, oxidoreductase; 1.70A {Metagenomes}
Probab=52.67 E-value=13 Score=31.28 Aligned_cols=77 Identities=12% Similarity=0.150 Sum_probs=43.7
Q ss_pred CCceecCCEEEeeeeCC---CCeEEE----Eccc-cCCCC-CCCCCcccccCCC---cEEEecccccEEEEeCCCC--CC
Q 030240 56 KTRFQVGDSLVWKYDAT---RDSVLQ----VTKE-AYLSC-NTSSPVAEYRDGN---TKVKLNKSGPFYFISGTKG--SC 121 (181)
Q Consensus 56 ~~~f~vGD~LvF~y~~~---~HsV~~----V~~~-~y~~C-~~~~~~~~~s~G~---~~v~L~~~G~~YFic~v~~--HC 121 (181)
..+++.||++++++.+. .+++.. +... ..|.= ..+. .....|. ..|+++++|+|||-|.... |=
T Consensus 36 ~I~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGvp~vtq--~~I~PG~~~~y~f~~~~~Gt~wyH~H~~~~~q~ 113 (339)
T 2zwn_A 36 LIHVQEGDDVIVNVTNNTSLPHTIHWHGVHQKGTWRSDGVPGVTQ--QPIEAGDSYTYKFKADRIGTLWYHCHVNVNEHV 113 (339)
T ss_dssp EEEEETTCEEEEEEEEESSSCBCCEEETCCCTTCGGGSCCBTTTB--CCBCTTCEEEEEEECCSCEEEEEECCSSHHHHT
T ss_pred eEEEECCCEEEEEEEECCCCCccEEeCCCCcCCCcccCCCCcccc--CccCCCCeEEEEEECCCCEEEEEEecCCchhhh
Confidence 35688999999998753 233321 1110 01110 0000 0123343 3677888999999998654 44
Q ss_pred c-CCCeEEEEeecC
Q 030240 122 E-KGQKLIVVVMSS 134 (181)
Q Consensus 122 ~-~GmKl~I~V~~~ 134 (181)
. .||...+.|...
T Consensus 114 ~~~Gl~G~liV~p~ 127 (339)
T 2zwn_A 114 GVRGMWGPLIVDPK 127 (339)
T ss_dssp TTSCCEEEEEEECS
T ss_pred hcCCceEeEEecCC
Confidence 4 799888888654
No 66
>3gdc_A Multicopper oxidase; beta sandwich, plasmid, oxidoreductase; 1.80A {Arthrobacter SP}
Probab=52.15 E-value=5.4 Score=32.89 Aligned_cols=75 Identities=11% Similarity=0.075 Sum_probs=47.1
Q ss_pred CCceecCCEEEeeeeC-C--C--CeEEE------EccccCCCCCCCCCc--c--cccCCC---cEEEecccccEEEEeCC
Q 030240 56 KTRFQVGDSLVWKYDA-T--R--DSVLQ------VTKEAYLSCNTSSPV--A--EYRDGN---TKVKLNKSGPFYFISGT 117 (181)
Q Consensus 56 ~~~f~vGD~LvF~y~~-~--~--HsV~~------V~~~~y~~C~~~~~~--~--~~s~G~---~~v~L~~~G~~YFic~v 117 (181)
..+++.||+++|...+ + . |.+.. +-+.+.. ...+. . ....|. ..+..+++|.|.|.|-+
T Consensus 196 ~l~v~~Ge~vr~~l~N~g~~~~~H~fHlhG~~f~v~~~g~~---~~~~~~~Dtv~v~pg~~~~v~~~~~~pG~~~~hCH~ 272 (288)
T 3gdc_A 196 PVKVKQHELVRIHLINVLEYDPINSFHIHGNFFHYYPTGTM---LTPSEYTDTISQVQGQRGILELRFPYPGKFMFHAHK 272 (288)
T ss_dssp CEEEETTCCEEEEEEECCCSSSEEEEEETTCCEEEEETTCC---SSCSEEESEEEEETTCEEEEEECCCSCEEEEEECSS
T ss_pred ccccCCCCEEEEEEEeCCCCCcceeEEEcCCEEEEEcCCCc---cCCCceeeEEEeCCCceEEEEEECCCCEEEEEEecC
Confidence 4578899999998864 2 1 55532 2111100 00111 0 112333 24566899999999999
Q ss_pred CCCCcCCCeEEEEeec
Q 030240 118 KGSCEKGQKLIVVVMS 133 (181)
Q Consensus 118 ~~HC~~GmKl~I~V~~ 133 (181)
..|=++||...++|.+
T Consensus 273 ~~H~~~GM~~~~~V~~ 288 (288)
T 3gdc_A 273 TEFAELGWMGFFEVSA 288 (288)
T ss_dssp HHHHTTTCEEEEEEEC
T ss_pred hHHHhcCCCEEEEEeC
Confidence 9999999999998863
No 67
>2gsm_B Cytochrome C oxidase subunit 2; transmembrane protein complex, oxidoreductase; HET: DMU HEA TRD; 2.00A {Rhodobacter sphaeroides} SCOP: b.6.1.2 f.17.2.1 PDB: 3dtu_B* 3fye_B* 3fyi_B* 3omi_B* 3om3_B* 3oma_B* 3omn_B* 1m56_B* 1m57_B*
Probab=51.90 E-value=12 Score=31.14 Aligned_cols=31 Identities=19% Similarity=0.302 Sum_probs=25.3
Q ss_pred EEEecccccEEEEeCCCCCCcCC---CeEEEEeecC
Q 030240 102 KVKLNKSGPFYFISGTKGSCEKG---QKLIVVVMSS 134 (181)
Q Consensus 102 ~v~L~~~G~~YFic~v~~HC~~G---mKl~I~V~~~ 134 (181)
.++.+++|.||..|+. -|..| |++.|.|.+.
T Consensus 214 ~~~~~~~G~y~g~Cse--~CG~~H~~M~~~v~vv~~ 247 (262)
T 2gsm_B 214 WFRAEREGIFFGQCSE--LCGISHAYMPITVKVVSE 247 (262)
T ss_dssp EEECCSCEEEEECCCS--CCSTTGGGCCEEEEEECH
T ss_pred EEecCCcEEEEEEChH--hcccCcccCeEEEEEEcH
Confidence 6788999999999994 67765 8998888753
No 68
>1v54_B Cytochrome C oxidase polypeptide II; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: b.6.1.2 f.17.2.1 PDB: 1oco_B* 1occ_B* 1ocz_B* 1ocr_B* 1v55_B* 2dyr_B* 2dys_B* 2eij_B* 2eik_B* 2eil_B* 2eim_B* 2ein_B* 2occ_B* 2y69_B* 2ybb_M* 2zxw_B* 3abk_B* 3abl_B* 3abm_B* 3ag1_B* ...
Probab=51.07 E-value=11 Score=30.72 Aligned_cols=31 Identities=10% Similarity=0.305 Sum_probs=25.1
Q ss_pred EEEecccccEEEEeCCCCCCcCC---CeEEEEeecC
Q 030240 102 KVKLNKSGPFYFISGTKGSCEKG---QKLIVVVMSS 134 (181)
Q Consensus 102 ~v~L~~~G~~YFic~v~~HC~~G---mKl~I~V~~~ 134 (181)
.++.+++|.||..|+. -|..| |.+.|.|.+.
T Consensus 183 ~~~~~~~G~y~g~Cse--~CG~~Hs~M~~~v~vv~~ 216 (227)
T 1v54_B 183 TLMSSRPGLYYGQCSE--ICGSNHSFMPIVLELVPL 216 (227)
T ss_dssp EECCSSCEEEEECCCS--CCSTTGGGCCEEEEEECH
T ss_pred EEecCCcEEEEEEehh--hcccccccCeEEEEEEcH
Confidence 5778999999999984 67765 8888888653
No 69
>2q9o_A Laccase-1; multicopper oxidase, 2-OXOH oxidoreductase; HET: OHI NAG MAN GOL; 1.30A {Melanocarpus albomyces} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB: 3fu7_A* 3fu8_A* 3fu7_B* 1gw0_A* 2ih9_A* 2ih8_A* 3fu9_A* 3qpk_A* 3dkh_A* 3pps_A*
Probab=50.64 E-value=21 Score=32.29 Aligned_cols=76 Identities=11% Similarity=0.078 Sum_probs=47.8
Q ss_pred CceecCCEEEeeeeCC----CCeEEE----Eccc-cCCC-CCCC-CCcccccC-CC---cEEEecccccEEEEeCCCCCC
Q 030240 57 TRFQVGDSLVWKYDAT----RDSVLQ----VTKE-AYLS-CNTS-SPVAEYRD-GN---TKVKLNKSGPFYFISGTKGSC 121 (181)
Q Consensus 57 ~~f~vGD~LvF~y~~~----~HsV~~----V~~~-~y~~-C~~~-~~~~~~s~-G~---~~v~L~~~G~~YFic~v~~HC 121 (181)
..++.||+|+.++.+. .+++.. +... ..|. -..+ .++ .. |. .+++++++|+|||=|-...|=
T Consensus 69 i~~~~GD~v~v~v~N~l~~~~tsiHwHG~~~~~~~~~DG~~~~tq~~I---~P~G~~~~Y~f~~~q~GT~wYH~H~~~q~ 145 (559)
T 2q9o_A 69 IVANWGDTVEVTVINNLVTNGTSIHWHGIXQKDTNLHDGANGVTECPI---PPKGGQRTYRWRARQYGTSWYHSHFSAQY 145 (559)
T ss_dssp EEEETTCEEEEEEEEECSSCCBCEEEETCCCTTCGGGSCCBTTTBCCB---CTTTEEEEEEEECCSCEEEEEEECSTTGG
T ss_pred EEEeCCCEEEEEEEeCCCCCCceEEcCCCccCCCCCcCCCCccccCcc---CCCCCeEEEEEECCCCEEEEEEEcccchh
Confidence 4678999999999753 244422 1101 1111 0000 011 23 43 367888999999999998888
Q ss_pred cCCCeEEEEeecCC
Q 030240 122 EKGQKLIVVVMSSR 135 (181)
Q Consensus 122 ~~GmKl~I~V~~~~ 135 (181)
..||...+.|....
T Consensus 146 ~~Gl~G~liV~~~~ 159 (559)
T 2q9o_A 146 GNGVVGTIQINGPA 159 (559)
T ss_dssp GGTCEEEEEEECCC
T ss_pred cCCceEEEEecCCC
Confidence 88999999887643
No 70
>1sdd_A Coagulation factor V; copper-binding protein, cofactor, blood clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3 b.6.1.3
Probab=50.61 E-value=2.3 Score=35.46 Aligned_cols=77 Identities=9% Similarity=0.192 Sum_probs=32.1
Q ss_pred CCceecCCEEEeeeeCCC-C-eEEEE--ccccCCCCC--CCCCcccccCCC---cEEEecccccEEEEeCCCCCCcCCCe
Q 030240 56 KTRFQVGDSLVWKYDATR-D-SVLQV--TKEAYLSCN--TSSPVAEYRDGN---TKVKLNKSGPFYFISGTKGSCEKGQK 126 (181)
Q Consensus 56 ~~~f~vGD~LvF~y~~~~-H-sV~~V--~~~~y~~C~--~~~~~~~~s~G~---~~v~L~~~G~~YFic~v~~HC~~GmK 126 (181)
..+++.||+++|+.-+.. . ....+ ....++. + ..+.+. ...|. ..++.+++|.++|.|-+..|-+.||.
T Consensus 216 ~l~v~~G~~vrlrliN~g~~~~~h~~hlhG~~~~~-dG~~~dtv~-l~pger~~v~~~~~~pG~~~~hch~~~H~~~GM~ 293 (306)
T 1sdd_A 216 DITVCAHDHISWHLIGMSSGPELFSIHFNGQVLEQ-NHHKISAIT-LVSATSTTANMTVSPEGRWTIASLIPRHFQAGMQ 293 (306)
T ss_dssp CCCCCCC------BBCCCSSSCEECCBCSSTTCEE-TTEECSCCC-EETTCCBC--------CCCCCBCCSTTTGGGTCB
T ss_pred ceEEcCCCEEEEEEEeCCCCCccEEEEECCcEeee-CCEEcceEE-ECCCcEEEEEEEcCCCeEEEEEeCChHHHhcCCe
Confidence 356778999999886532 1 22211 1111110 0 011111 12222 35677889999999999999999999
Q ss_pred EEEEeecC
Q 030240 127 LIVVVMSS 134 (181)
Q Consensus 127 l~I~V~~~ 134 (181)
..+.|...
T Consensus 294 ~~~~V~~~ 301 (306)
T 1sdd_A 294 AYIDIKNC 301 (306)
T ss_dssp CCC-----
T ss_pred EEEEEecC
Confidence 88888753
No 71
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=49.05 E-value=6.6 Score=27.57 Aligned_cols=18 Identities=22% Similarity=0.455 Sum_probs=15.6
Q ss_pred ccCCceecCCEEEeeeeC
Q 030240 54 AEKTRFQVGDSLVWKYDA 71 (181)
Q Consensus 54 A~~~~f~vGD~LvF~y~~ 71 (181)
+..+..+.||.|+|++..
T Consensus 73 v~~~~L~~GD~lvF~~~~ 90 (104)
T 1yel_A 73 VKDNNLEDGKYLQFIYDR 90 (104)
T ss_dssp HHHHTCCTTCEEEEEECS
T ss_pred HHHcCCCCCCEEEEEEcC
Confidence 467889999999999975
No 72
>1zpu_A Iron transport multicopper oxidase FET3; ferroxidase, oxidoreduc; HET: NAG BMA MAN NDG; 2.80A {Saccharomyces cerevisiae}
Probab=45.20 E-value=36 Score=30.53 Aligned_cols=77 Identities=16% Similarity=0.250 Sum_probs=48.3
Q ss_pred CCceecCCEEEeeeeCCC----CeEEE----Eccc-cCCC-CCCC-CCcccccCCC---cEEEec-ccccEEEEeCCCCC
Q 030240 56 KTRFQVGDSLVWKYDATR----DSVLQ----VTKE-AYLS-CNTS-SPVAEYRDGN---TKVKLN-KSGPFYFISGTKGS 120 (181)
Q Consensus 56 ~~~f~vGD~LvF~y~~~~----HsV~~----V~~~-~y~~-C~~~-~~~~~~s~G~---~~v~L~-~~G~~YFic~v~~H 120 (181)
...++.||+|+.++.+.- +++.. +... ..|. ...+ .++ ..|. .+++++ ++|+|||-|-...|
T Consensus 35 ~i~~~~Gd~v~v~v~N~l~~~~tsiHwHG~~~~~~~~~DG~~~vtq~pI---~PG~~~~Y~f~~~~~~GT~wYH~H~~~q 111 (534)
T 1zpu_A 35 DITVNKGDRVQIYLTNGMNNTNTSMHFHGLFQNGTASMDGVPFLTQCPI---APGSTMLYNFTVDYNVGTYWYHSHTDGQ 111 (534)
T ss_dssp CEEEETTCEEEEEEECCCSSCCBCCEEETCCCTTCGGGSCCBTTTBCCB---CTTCEEEEEEECSSCCEEEEEECCSSSG
T ss_pred cEEEECCCEEEEEEEeCCCCCCeeEEcCCcccCCCCcccCCCccccCCc---CCCCeEEEEEEeCccceeEEEEEcCccc
Confidence 357889999999998642 22321 0000 0111 0000 012 3333 267777 89999999999888
Q ss_pred CcCCCeEEEEeecCC
Q 030240 121 CEKGQKLIVVVMSSR 135 (181)
Q Consensus 121 C~~GmKl~I~V~~~~ 135 (181)
=..|+...+.|....
T Consensus 112 ~~~Gl~G~liV~~~~ 126 (534)
T 1zpu_A 112 YEDGMKGLFIIKDDS 126 (534)
T ss_dssp GGGTCEEEEEEECTT
T ss_pred ccCcceeeEEeCCCC
Confidence 888999999998754
No 73
>3sqr_A Laccase; multicopper oxidase, glycosylation, oxidoreductase; HET: NAG BMA MAN; 1.67A {Botrytis aclada}
Probab=44.98 E-value=37 Score=31.17 Aligned_cols=34 Identities=12% Similarity=0.126 Sum_probs=29.1
Q ss_pred EEEecccccEEEEeCCCCCCcCCCeEEEEeecCC
Q 030240 102 KVKLNKSGPFYFISGTKGSCEKGQKLIVVVMSSR 135 (181)
Q Consensus 102 ~v~L~~~G~~YFic~v~~HC~~GmKl~I~V~~~~ 135 (181)
+|+++++|+|||=|-...+=..|+...|.|..+.
T Consensus 156 ~f~~~q~GT~WYHsH~~~q~~~GL~G~lIV~~p~ 189 (580)
T 3sqr_A 156 KFQVTQYGTTWYHSHFSLQYGDGLFGPLIINGPA 189 (580)
T ss_dssp EEECCCCEEEEEEECSTTGGGGTCEEEEEEECCC
T ss_pred EEECCCCcceEEeecccccccCcCEEEEEeeCcc
Confidence 6788899999999999888888999888887643
No 74
>1aoz_A Ascorbate oxidase; oxidoreductase(oxygen acceptor); HET: NAG; 1.90A {Cucurbita pepo var} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1aso_A* 1asp_A* 1asq_A*
Probab=44.69 E-value=36 Score=30.51 Aligned_cols=78 Identities=14% Similarity=0.157 Sum_probs=48.7
Q ss_pred CCceecCCEEEeeeeCC----CCeEEE----Ecccc-CCC-CCCCCCcccccCCC---cEEEecccccEEEEeCCCCCCc
Q 030240 56 KTRFQVGDSLVWKYDAT----RDSVLQ----VTKEA-YLS-CNTSSPVAEYRDGN---TKVKLNKSGPFYFISGTKGSCE 122 (181)
Q Consensus 56 ~~~f~vGD~LvF~y~~~----~HsV~~----V~~~~-y~~-C~~~~~~~~~s~G~---~~v~L~~~G~~YFic~v~~HC~ 122 (181)
...++.||+|+.++.+. .+++.. +.... .|. -..+. .....|. .+++++++|+|||=|-...+=.
T Consensus 35 ~I~~~~GD~v~v~v~N~l~~~~tsiHwHGl~~~~~~~~DGv~~vtq--~~I~PG~s~tY~f~~~~~GT~wYHsH~~~q~~ 112 (552)
T 1aoz_A 35 TIRANAGDSVVVELTNKLHTEGVVIHWHGILQRGTPWADGTASISQ--CAINPGETFFYNFTVDNPGTFFYHGHLGMQRS 112 (552)
T ss_dssp CEEEETTCEEEEEEEECCSSCCBCEEEETCCCTTCGGGSCCBTTTB--CCBCTTCEEEEEEECCSCEEEEEEECSTTTGG
T ss_pred cEEEeCCCEEEEEEEeCCCCCCeeEEeCCCccCCCcccCCCccccc--CCcCCCCeEEEEEECCCCEEEEEEECchhHHh
Confidence 35788999999999753 233421 11111 111 00000 0123343 2677889999999999988888
Q ss_pred CCCeEEEEeecCC
Q 030240 123 KGQKLIVVVMSSR 135 (181)
Q Consensus 123 ~GmKl~I~V~~~~ 135 (181)
.|+...+.|....
T Consensus 113 ~Gl~G~liV~~~~ 125 (552)
T 1aoz_A 113 AGLYGSLIVDPPQ 125 (552)
T ss_dssp GTCEEEEEEECCT
T ss_pred ccCeeeEEEeCCc
Confidence 8999999998764
No 75
>3g5w_A Multicopper oxidase type 1; two domain, laccase, nitrifier, metal B protein; 1.90A {Nitrosomonas europaea}
Probab=44.32 E-value=27 Score=29.10 Aligned_cols=34 Identities=6% Similarity=0.076 Sum_probs=27.1
Q ss_pred EEEecccccEEEEeCCCCCCc------CCCeEEEEeecCC
Q 030240 102 KVKLNKSGPFYFISGTKGSCE------KGQKLIVVVMSSR 135 (181)
Q Consensus 102 ~v~L~~~G~~YFic~v~~HC~------~GmKl~I~V~~~~ 135 (181)
.+..+++|.+.|-|-+..|-. .||...|.+....
T Consensus 239 ~~~a~~pG~w~~hCH~~~H~~~g~~~~~Gm~~~i~~~g~~ 278 (318)
T 3g5w_A 239 ILNMDNPGLWMIHDHVDTHTTNGDKPDGGIMTTIEYEEVG 278 (318)
T ss_dssp EEECCSCSEEEEEESSGGGSCBTTBSSCBSEEEEEETTTC
T ss_pred EEECCCCeeEEEEeccHHHhhccCcCCCCCEEEEEECCCC
Confidence 567788999999999999998 4677777776543
No 76
>3g5w_A Multicopper oxidase type 1; two domain, laccase, nitrifier, metal B protein; 1.90A {Nitrosomonas europaea}
Probab=43.83 E-value=19 Score=30.06 Aligned_cols=76 Identities=11% Similarity=0.106 Sum_probs=43.6
Q ss_pred CceecCCEEEeeeeCC---CCeEEEE--ccc---cCCC-CCCCCCcccccCCC---cEEEecccccEEEEeCCCCC-C--
Q 030240 57 TRFQVGDSLVWKYDAT---RDSVLQV--TKE---AYLS-CNTSSPVAEYRDGN---TKVKLNKSGPFYFISGTKGS-C-- 121 (181)
Q Consensus 57 ~~f~vGD~LvF~y~~~---~HsV~~V--~~~---~y~~-C~~~~~~~~~s~G~---~~v~L~~~G~~YFic~v~~H-C-- 121 (181)
.+++.||+|+.++.+. .|++..= ... ..|. -..+ ......|. ..++.+++|++||-|..... .
T Consensus 36 i~~~~Gd~v~v~~~N~l~~~~siH~HG~~~~~~~~~DG~p~~t--~~~i~PG~~~~y~f~~~~~Gt~wYH~H~~~~~~~~ 113 (318)
T 3g5w_A 36 IHVMEGDDVTVNVTNMTTLPHTIHWHGMLQRGTWQSDGVPHAT--QHAIEPGDTFTYKFKAEPAGTMWYHCHVNVNEHVT 113 (318)
T ss_dssp EEEETTCEEEEEEEECSSSCBCCEEETCCCTTCGGGSCCBTTT--BCCBCTTCEEEEEEECCSCEEEEEECCSSHHHHHH
T ss_pred EEEeCCCEEEEEEEeCCCCceeEEecCcCCCCCcccCCCcccc--cccCCCCCEEEEEEEcCCCEEEEEEccCChhhhhc
Confidence 5688999999999753 3444321 100 1111 0000 01123343 26778899999999987422 1
Q ss_pred cCCCeEEEEeecC
Q 030240 122 EKGQKLIVVVMSS 134 (181)
Q Consensus 122 ~~GmKl~I~V~~~ 134 (181)
..||...+.|...
T Consensus 114 ~~Gl~G~lIV~~~ 126 (318)
T 3g5w_A 114 MRGMWGPLIVEPK 126 (318)
T ss_dssp HSCCEEEEEEECS
T ss_pred cCCCEEEEEEcCC
Confidence 2699888888654
No 77
>3t6v_A Laccase; beta barrel, oxidoreductase; HET: CBS; 2.00A {Steccherinum ochraceum} PDB: 3t6w_A* 3t6x_A* 3t6z_A* 3t71_A*
Probab=43.68 E-value=37 Score=30.26 Aligned_cols=78 Identities=15% Similarity=0.130 Sum_probs=47.5
Q ss_pred CceecCCEEEeeeeCCC--------CeEEEE--ccccCCCCCCCCC--c--ccccCCC---cEEEe-cccccEEEEeCCC
Q 030240 57 TRFQVGDSLVWKYDATR--------DSVLQV--TKEAYLSCNTSSP--V--AEYRDGN---TKVKL-NKSGPFYFISGTK 118 (181)
Q Consensus 57 ~~f~vGD~LvF~y~~~~--------HsV~~V--~~~~y~~C~~~~~--~--~~~s~G~---~~v~L-~~~G~~YFic~v~ 118 (181)
..++.||+|+.++.+.- +++.-= .+. ......+. + .....|. .+|++ +++|+|||-|-..
T Consensus 37 I~~~~GD~v~v~v~N~l~~~~~~~~tsiHwHGl~~~--~~~~~DGv~~vtq~pI~PG~sftY~f~~~~~~GT~wYHsH~~ 114 (495)
T 3t6v_A 37 IAGNVGDNFQIVTFNQLIECSMLVDTSIHWHGEFQK--GTNWADGPAFITQCPIIVGNSFSYNFNVPGMAGTYWYHSHLT 114 (495)
T ss_dssp EEEETTCEEEEEEEECCCCGGGCSCBCEEEETCCCT--TCGGGSCCBTTTBCCBCTTCEEEEEEECTTCCEEEEEEECST
T ss_pred EEEECCcEEEEEEEECCCCccCCCceEEEeCCcccC--CCccccCCCccccCCCCCCCeEEEEEEeCCCCceeeeeccch
Confidence 46889999999997642 334221 110 00111111 0 0113343 26677 6799999999998
Q ss_pred CCCcCCCeEEEEeecCCC
Q 030240 119 GSCEKGQKLIVVVMSSRR 136 (181)
Q Consensus 119 ~HC~~GmKl~I~V~~~~~ 136 (181)
.+=..|+...+.|..+..
T Consensus 115 ~q~~~GL~G~lIV~~~~~ 132 (495)
T 3t6v_A 115 TQYCDGLRGPFVVYDPND 132 (495)
T ss_dssp TGGGGTCEEEEEEECTTC
T ss_pred hHHhcCceEEEEEcCccc
Confidence 887889999999976543
No 78
>1kbv_A ANIA, major outer membrane protein PAN 1; ANIA[NO2-], oxidoreductase; 1.95A {Neisseria gonorrhoeae} SCOP: b.6.1.3 b.6.1.3 PDB: 1kbw_A
Probab=42.70 E-value=16 Score=30.48 Aligned_cols=35 Identities=14% Similarity=0.194 Sum_probs=29.1
Q ss_pred EEEecccccEEEEeCCCCCC-cCCCeEEEEeecCCC
Q 030240 102 KVKLNKSGPFYFISGTKGSC-EKGQKLIVVVMSSRR 136 (181)
Q Consensus 102 ~v~L~~~G~~YFic~v~~HC-~~GmKl~I~V~~~~~ 136 (181)
.++.+++|.|+|.|....|| +.||...+.+.....
T Consensus 275 ~v~~~~pG~y~l~~h~~~~~~~~g~~a~l~~~g~~~ 310 (327)
T 1kbv_A 275 EFKVDIPGNYTLVDHSIFRAFNKGALGQLKVEGAEN 310 (327)
T ss_dssp EEEECSCEEEEEEESSTHHHHHSSCEEEEEEESCCC
T ss_pred EEEeCCCeEEEEEeccccccccCCcEEEEEECCCCC
Confidence 56778899999999999998 789988888876543
No 79
>3pxl_A Laccase; 4-copper protein, metal-binding, oxidoreductase, type-2 Cu-D; HET: NAG BMA MAN; 1.20A {Trametes hirsuta} PDB: 3fpx_A* 3v9c_A* 3div_A* 2h5u_A* 2xyb_A* 1kya_A* 1gyc_A* 2qt6_A* 2hrg_A* 2hrh_A* 4a2f_A* 2vdz_A* 4a2d_A* 4a2e_A* 4a2g_A* 4a2h_A* 2ve0_A* 2vds_A* 2hzh_A* 3kw7_A*
Probab=42.11 E-value=41 Score=30.08 Aligned_cols=79 Identities=14% Similarity=0.161 Sum_probs=47.9
Q ss_pred CCceecCCEEEeeeeCCC--------CeEEEE--ccccCCCCCCCCCc----ccccCCC---cEEEe-cccccEEEEeCC
Q 030240 56 KTRFQVGDSLVWKYDATR--------DSVLQV--TKEAYLSCNTSSPV----AEYRDGN---TKVKL-NKSGPFYFISGT 117 (181)
Q Consensus 56 ~~~f~vGD~LvF~y~~~~--------HsV~~V--~~~~y~~C~~~~~~----~~~s~G~---~~v~L-~~~G~~YFic~v 117 (181)
..+++.||+|+.++.+.- +++.-= .+. ......+.- .....|. .+|++ +++|+|||-|-.
T Consensus 35 ~I~~~~GD~v~V~v~N~l~~~~~~~~tsiHwHGl~~~--~~~~~DGv~~vtq~pI~PG~s~tY~f~~~~~~GT~wYHsH~ 112 (499)
T 3pxl_A 35 LVAGNIGDRFQLNVIDNLTNHTMLKSTSIHWHGFFQH--GTNWADGPAFINQCPISPGHSFLYDFQVPDQAGTFWYHSHL 112 (499)
T ss_dssp CEEEETTCEEEEEEEECCCCGGGCSCBCEEEETCCCT--TCGGGSCCBTTTBCCBCTTCEEEEEEECSSCCEEEEEEECS
T ss_pred eEEEeCCCEEEEEEEECCCCccCCCceEEEeCCcccC--CCccccCCCccccCCCCCCCeEEEEEEcCCCCceeeeeccc
Confidence 356889999999997542 344221 100 001111110 0113343 25666 679999999999
Q ss_pred CCCCcCCCeEEEEeecCCC
Q 030240 118 KGSCEKGQKLIVVVMSSRR 136 (181)
Q Consensus 118 ~~HC~~GmKl~I~V~~~~~ 136 (181)
..+=..|+...+.|..+..
T Consensus 113 ~~q~~~GL~G~lIV~~~~~ 131 (499)
T 3pxl_A 113 STQYCDGLRGPFVVYDPND 131 (499)
T ss_dssp TTGGGGTCEEEEEEECTTC
T ss_pred hhHHhccceeEEEEcCCcc
Confidence 8887889999999976543
No 80
>3tas_A Small laccase, multi-copper oxidase; two-domain laccase, oxidoreductase, secreted; HET: PG4; 2.30A {Streptomyces viridosporus} PDB: 3tbb_A 3tbc_A*
Probab=36.72 E-value=38 Score=28.06 Aligned_cols=32 Identities=9% Similarity=0.189 Sum_probs=28.4
Q ss_pred cccccEEEEeCCCCCCcCCCeEEEEeecCCCC
Q 030240 106 NKSGPFYFISGTKGSCEKGQKLIVVVMSSRRR 137 (181)
Q Consensus 106 ~~~G~~YFic~v~~HC~~GmKl~I~V~~~~~~ 137 (181)
+.||.+.|-|-+..|=++||.-.++|......
T Consensus 244 ~nPG~w~~HCHi~~H~~~GM~~~f~V~~~d~~ 275 (313)
T 3tas_A 244 VGAGAWMYHCHVQSHSDMGMVGLFLVKKPDGT 275 (313)
T ss_dssp TCSEEEEEEECSHHHHHTTCEEEEEEECTTCC
T ss_pred CCCEeEEEEeCChHHHHCCCeEEEEEECCCCC
Confidence 35899999999999999999999999987765
No 81
>2hzs_I RNA polymerase II mediator complex subunit 8; beta barrel, channel, helix, transcription; 2.70A {Saccharomyces cerevisiae}
Probab=35.28 E-value=0.75 Score=25.17 Aligned_cols=19 Identities=21% Similarity=0.506 Sum_probs=14.2
Q ss_pred CCceecCCEEEeeeeCCCC
Q 030240 56 KTRFQVGDSLVWKYDATRD 74 (181)
Q Consensus 56 ~~~f~vGD~LvF~y~~~~H 74 (181)
.+.|.|.|.|.|.|+...|
T Consensus 4 skpfnvddvlkftftgekh 22 (27)
T 2hzs_I 4 SKPFNVDDVLKFTFTGEKH 22 (27)
T ss_dssp --CCCHHHHHHHHHHCCCC
T ss_pred CCCcChhheEEEEeccccc
Confidence 4689999999999986544
No 82
>1v10_A Laccase; multicopper blue oxidase, oxidase; 1.7A {Rigidoporus lignosus} SCOP: b.6.1.3 b.6.1.3 b.6.1.3
Probab=33.22 E-value=69 Score=28.50 Aligned_cols=34 Identities=15% Similarity=0.282 Sum_probs=28.4
Q ss_pred EEEe-cccccEEEEeCCCCCCcCCCeEEEEeecCC
Q 030240 102 KVKL-NKSGPFYFISGTKGSCEKGQKLIVVVMSSR 135 (181)
Q Consensus 102 ~v~L-~~~G~~YFic~v~~HC~~GmKl~I~V~~~~ 135 (181)
++++ +++|+|||=|-...|=..|+...+.|....
T Consensus 117 ~f~~~~~~GT~wYH~H~~~q~~~Gl~G~liV~~~~ 151 (521)
T 1v10_A 117 DFVVPGQAGTYWYHSHLSTQYCDGLRGAFVVYDPN 151 (521)
T ss_dssp EEECTTCCEEEEEEECSTTGGGGTCEEEEEEECTT
T ss_pred EEecCCCCccEEEEeccCCchhcCceEEEEEcCCc
Confidence 5663 578999999999888888999999998754
No 83
>2uxt_A Protein SUFI, SUFI; oxidoreductase, periplasmic, cupredoxin-like, FTS mutant suppressor; 1.90A {Escherichia coli} PDB: 2uxv_A
Probab=33.09 E-value=26 Score=30.67 Aligned_cols=74 Identities=14% Similarity=0.193 Sum_probs=46.1
Q ss_pred CceecCCEEEeeeeCC---CCeEEE----EccccCCCCCCCCCcccccCCC---cEEEecc-cccEEEEeCC----CCCC
Q 030240 57 TRFQVGDSLVWKYDAT---RDSVLQ----VTKEAYLSCNTSSPVAEYRDGN---TKVKLNK-SGPFYFISGT----KGSC 121 (181)
Q Consensus 57 ~~f~vGD~LvF~y~~~---~HsV~~----V~~~~y~~C~~~~~~~~~s~G~---~~v~L~~-~G~~YFic~v----~~HC 121 (181)
..++.||+|+.++.+. .+++.. +..+ .|. . +......|. .++++++ +|+|||=|-. ..|=
T Consensus 52 i~~~~Gd~v~v~~~N~l~~~tsiHwHG~~~~~~-~DG-~---~~~~i~PG~~~~Y~f~~~~~~GT~wYH~H~~~~t~~q~ 126 (451)
T 2uxt_A 52 IRVWKGDDVKLIYSNRLTENVSMTVAGLQVPGP-LMG-G---PARMMSPNADWAPVLPIRQNAATLWYHANTPNRTAQQV 126 (451)
T ss_dssp EEEETTCEEEEEEEECSSSCBCEEEETCCCCGG-GSC-S---GGGCBCTTCEECCEEECCSCSEEEEEEECCTTTHHHHH
T ss_pred EEEeCCCEEEEEEEECCCCCccEEECCccCCCC-CCC-C---CcCcCCCCCeEEEEEEcCCCCcceEEecCCCCchhhhH
Confidence 4578999999999764 344421 1111 111 0 011122333 3778886 9999999987 3456
Q ss_pred cCCCeEEEEeecCC
Q 030240 122 EKGQKLIVVVMSSR 135 (181)
Q Consensus 122 ~~GmKl~I~V~~~~ 135 (181)
..||-..+.|....
T Consensus 127 ~~Gl~G~liV~~~~ 140 (451)
T 2uxt_A 127 YNGLAGMWLVEDEV 140 (451)
T ss_dssp HTTCEEEEEEECHH
T ss_pred hhcceEEEEEecCc
Confidence 68999888888654
No 84
>2z0t_A Putative uncharacterized protein PH0355; alpha/beta protein, RNA binding protein, structural genomics, NPPSFA; 1.80A {Pyrococcus horikoshii} PDB: 1s04_A
Probab=32.71 E-value=21 Score=25.95 Aligned_cols=11 Identities=18% Similarity=0.637 Sum_probs=9.7
Q ss_pred CceecCCEEEe
Q 030240 57 TRFQVGDSLVW 67 (181)
Q Consensus 57 ~~f~vGD~LvF 67 (181)
+.+++||.|+|
T Consensus 32 ~~ikvGD~I~f 42 (109)
T 2z0t_A 32 RQIKPGDIIIF 42 (109)
T ss_dssp GGCCTTCEEEE
T ss_pred hcCCCCCEEEE
Confidence 37899999999
No 85
>1xne_A Hypothetical protein PF0469; GFT structural genomics, protein structure initiative, NESG, PFR14, alpha and beta protein; NMR {Pyrococcus furiosus} SCOP: b.122.1.6
Probab=32.62 E-value=15 Score=26.83 Aligned_cols=13 Identities=15% Similarity=0.493 Sum_probs=10.5
Q ss_pred CceecCCEEEeee
Q 030240 57 TRFQVGDSLVWKY 69 (181)
Q Consensus 57 ~~f~vGD~LvF~y 69 (181)
+.+++||+|+|+=
T Consensus 33 ~~i~vGD~I~f~~ 45 (113)
T 1xne_A 33 KDIKRGDKIIFND 45 (113)
T ss_dssp TTCCTTCEEEETT
T ss_pred hccCCCCEEEEcc
Confidence 3679999999943
No 86
>3t9w_A Small laccase, multi-copper oxidase; two-domain copper oxidase, Cu-binding, oxidoreducta; 1.50A {Amycolatopsis SP}
Probab=32.01 E-value=21 Score=29.62 Aligned_cols=32 Identities=9% Similarity=0.177 Sum_probs=28.3
Q ss_pred cccccEEEEeCCCCCCcCCCeEEEEeecCCCC
Q 030240 106 NKSGPFYFISGTKGSCEKGQKLIVVVMSSRRR 137 (181)
Q Consensus 106 ~~~G~~YFic~v~~HC~~GmKl~I~V~~~~~~ 137 (181)
+.||.+.|-|-+..|=++||...+.|.....+
T Consensus 260 dnPG~w~~HCHi~~H~~~GM~~~f~V~~~~~~ 291 (299)
T 3t9w_A 260 VGPGMWMYHCHVQNHSDMGMAGMFLVRNADGT 291 (299)
T ss_dssp TCSEEEEEEECSHHHHHTTCEEEEEEECTTSC
T ss_pred CCCeeEEEEcCCHHHHhcCCeEEEEEECCCCC
Confidence 45899999999999999999999999887653
No 87
>2l55_A SILB,silver efflux protein, MFP component of the components proton antiporter metal...; APO form, AG(I)-binding site; NMR {Cupriavidus metallidurans}
Probab=31.34 E-value=24 Score=24.05 Aligned_cols=21 Identities=10% Similarity=0.259 Sum_probs=16.2
Q ss_pred hcccCCceecCCEEEeeeeCC
Q 030240 52 QWAEKTRFQVGDSLVWKYDAT 72 (181)
Q Consensus 52 ~WA~~~~f~vGD~LvF~y~~~ 72 (181)
+-+.-..+++||.|.|.+...
T Consensus 41 ~~~~l~~lk~Gd~V~F~~~~~ 61 (82)
T 2l55_A 41 PAGLPQGLKAGDRVAFSFRLD 61 (82)
T ss_dssp TTCCCSSCSTTCEEEEEEEEE
T ss_pred ChhHhhcCCCCCEEEEEEEEC
Confidence 334456899999999999853
No 88
>2bw4_A Copper-containing nitrite reductase; oxidoreductase, denitrification, catalysis, enzyme mechanism, nitrate assimilation; 0.90A {Achromobacter cycloclastes} SCOP: b.6.1.3 b.6.1.3 PDB: 1nib_A 1nia_A 1nid_A 1nie_A 1nic_A 1nif_A 2bw5_A 2bwd_A 2bwi_A 2nrd_A 2y1a_A 1kcb_A 1rzp_A* 1rzq_A 2avf_A 1as6_A 1aq8_A 1as7_A 1as8_A 2afn_A ...
Probab=31.16 E-value=46 Score=27.60 Aligned_cols=35 Identities=11% Similarity=0.106 Sum_probs=28.2
Q ss_pred EEEecccccEEEEeCCCC-CCcCCCeEEEEeecCCC
Q 030240 102 KVKLNKSGPFYFISGTKG-SCEKGQKLIVVVMSSRR 136 (181)
Q Consensus 102 ~v~L~~~G~~YFic~v~~-HC~~GmKl~I~V~~~~~ 136 (181)
.+..+++|.|+|.|.... |=+.||.-.+.|.....
T Consensus 292 ~v~~~~pG~y~~~~h~~~~h~~~Gm~~~~~V~~~~~ 327 (340)
T 2bw4_A 292 FYTFRQPGVYAYVNHNLIEAFELGAAGHFKVTGEWN 327 (340)
T ss_dssp EEECCSCEEEEEEESSHHHHHTTSCEEEEEEESCCC
T ss_pred EEECCCCeeeEEEcCchHHHHhCCCEEEEEECCCCc
Confidence 467788999999999874 55789999999987554
No 89
>2zoo_A Probable nitrite reductase; electron transfer, electron transport, heme, iron, binding, oxidoreductase, transport; HET: SUC HEM; 1.95A {Pseudoalteromonas haloplanktis}
Probab=29.71 E-value=35 Score=29.37 Aligned_cols=35 Identities=17% Similarity=0.278 Sum_probs=29.2
Q ss_pred EEEecccccEEEEeCCCCCC-cCCCeEEEEeecCCC
Q 030240 102 KVKLNKSGPFYFISGTKGSC-EKGQKLIVVVMSSRR 136 (181)
Q Consensus 102 ~v~L~~~G~~YFic~v~~HC-~~GmKl~I~V~~~~~ 136 (181)
.++.+++|.|+|.|....|+ ..||...+.|.....
T Consensus 265 ~v~~~~~G~y~~~~~~~~~~~~~g~~a~l~v~~~~~ 300 (442)
T 2zoo_A 265 EFKVEVPGTFILVDHSIFRAFNKGALAMLKVEGPDD 300 (442)
T ss_dssp EEECCSCEEEEEEESSTHHHHTTSCEEEEEEESCCC
T ss_pred EEEcCCCCeEEEEecccccccccCceEEEEecCCCC
Confidence 56778899999999988887 789988888876654
No 90
>2xu9_A Laccase; oxidoreductase, multicopper oxidases; 1.50A {Thermus thermophilus} PDB: 2xuw_A 2xvb_A 2yae_A 2yaf_A 2yah_A 2yam_A 2yao_A 2yap_A 2yaq_A 2yar_A 4ai7_A
Probab=29.51 E-value=83 Score=27.17 Aligned_cols=77 Identities=18% Similarity=0.227 Sum_probs=0.0
Q ss_pred ceecCCEEEeeeeCCCCeEEEE-ccccCCCCCCCCCcccccCCCc---EEEe--cccccEEEEeCCCC----CCcCCCeE
Q 030240 58 RFQVGDSLVWKYDATRDSVLQV-TKEAYLSCNTSSPVAEYRDGNT---KVKL--NKSGPFYFISGTKG----SCEKGQKL 127 (181)
Q Consensus 58 ~f~vGD~LvF~y~~~~HsV~~V-~~~~y~~C~~~~~~~~~s~G~~---~v~L--~~~G~~YFic~v~~----HC~~GmKl 127 (181)
.++.||+|+.++.+.-..-..+ -..-...-...+.......|.+ ++++ +.+|+|||-|-..+ |=..||..
T Consensus 50 ~~~~Gd~v~v~~~N~l~~~tsiHwHG~~~~~~~DG~~~~I~PG~~~~Y~f~~~~~~~GT~wYH~H~~~~t~~q~~~Gl~G 129 (439)
T 2xu9_A 50 RVRPRDTVRLTLENRLPEPTNLHWHGLPISPKVDDPFLEIPPGESWTYEFTVPKELAGTFWYHPHLHGRVAPQLFAGLLG 129 (439)
T ss_dssp EECTTCEEEEEEEECSSSCBCCEEETCCCCTTTSCTTCCBCTTCEEEEEEECCSSCCEEEEEECCCTTSHHHHHHTTCCE
T ss_pred EEeCCCEEEEEEEECCCCCcceEeCCCCCCccccCCcccCCCCCeEEEEEecCCCCCcceEeccCCCCchHHHHHhhCeE
Q ss_pred EEEeecC
Q 030240 128 IVVVMSS 134 (181)
Q Consensus 128 ~I~V~~~ 134 (181)
.+.|...
T Consensus 130 ~liV~~~ 136 (439)
T 2xu9_A 130 ALVVESS 136 (439)
T ss_dssp EEEECCG
T ss_pred EEEEcCc
No 91
>2qcp_X Cation efflux system protein CUSF; silver-binding, copper-binding, beta barrel, OB-fold, metall metal resistance, metal-binding; 1.00A {Escherichia coli str} PDB: 1zeq_X 3e6z_X
Probab=29.39 E-value=34 Score=23.09 Aligned_cols=16 Identities=13% Similarity=0.474 Sum_probs=13.7
Q ss_pred CCceecCCEEEeeeeC
Q 030240 56 KTRFQVGDSLVWKYDA 71 (181)
Q Consensus 56 ~~~f~vGD~LvF~y~~ 71 (181)
-..+++||.|.|.+..
T Consensus 51 l~~lk~Gd~V~F~~~~ 66 (80)
T 2qcp_X 51 MSEIKTGDKVAFNFVQ 66 (80)
T ss_dssp ECCCCTTCEEEEEEEE
T ss_pred hhcCCCCCEEEEEEEE
Confidence 3579999999999975
No 92
>2vb2_X Copper protein, cation efflux system protein CUSF; cation PI, metal-binding, metal transport, copper tolerance, transport; 1.70A {Escherichia coli} PDB: 2vb3_X
Probab=28.42 E-value=36 Score=23.45 Aligned_cols=20 Identities=10% Similarity=0.361 Sum_probs=15.5
Q ss_pred hcccCCceecCCEEEeeeeC
Q 030240 52 QWAEKTRFQVGDSLVWKYDA 71 (181)
Q Consensus 52 ~WA~~~~f~vGD~LvF~y~~ 71 (181)
+.+.-..+++||.|.|.+..
T Consensus 55 ~~~~l~~lk~Gd~V~F~~~~ 74 (88)
T 2vb2_X 55 PQTKMSEIKTGDKVAFNFVQ 74 (88)
T ss_dssp TTCEECCCCTTCEEEEEEEE
T ss_pred ChhhhhcCCCCCEEEEEEEE
Confidence 33434679999999999975
No 93
>3t9w_A Small laccase, multi-copper oxidase; two-domain copper oxidase, Cu-binding, oxidoreducta; 1.50A {Amycolatopsis SP}
Probab=28.02 E-value=2.4e+02 Score=22.99 Aligned_cols=29 Identities=21% Similarity=0.212 Sum_probs=20.2
Q ss_pred ccccEEEEeCCCC------CCcCCCeEEEEeecCC
Q 030240 107 KSGPFYFISGTKG------SCEKGQKLIVVVMSSR 135 (181)
Q Consensus 107 ~~G~~YFic~v~~------HC~~GmKl~I~V~~~~ 135 (181)
..|++||-|-..+ |=..||.-.+.|....
T Consensus 130 ~~gt~~YH~H~~~~~~~~~~~~~GL~G~liV~~~~ 164 (299)
T 3t9w_A 130 TAGYWHYHDHAMGTEHGTEGVLKGLYGALVVRRQG 164 (299)
T ss_dssp CCEEEEEECSSSSSTTCHHHHHHTCEEEEEEECTT
T ss_pred CceeEEEecCCcccccchhhhcccccceEEEeccc
Confidence 4599999886533 1235999888887654
No 94
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=27.92 E-value=31 Score=24.32 Aligned_cols=29 Identities=14% Similarity=0.267 Sum_probs=23.6
Q ss_pred EEEEeCCCCCccCCCCCCccchhcccCCceecCCEEEee
Q 030240 30 DILVGGKTDSWKIPSSQSDSLNQWAEKTRFQVGDSLVWK 68 (181)
Q Consensus 30 ~~~VGg~~G~W~~~~~~~~~Y~~WA~~~~f~vGD~LvF~ 68 (181)
+.+|||+.| .+ ..+.|-.. ++.||.+.++
T Consensus 41 ~~~l~DeTG--~I------~~tlW~~~--l~~Gdvv~i~ 69 (106)
T 2k75_A 41 QGYIEDDTA--RI------RISSFGKQ--LQDSDVVRID 69 (106)
T ss_dssp EEEEECSSC--EE------EEEEESSC--CCTTEEEEEE
T ss_pred EEEEEcCCC--eE------EEEEEcCc--cCCCCEEEEE
Confidence 578899888 33 37899876 9999999988
No 95
>1sdd_B Coagulation factor V; copper-binding protein, cofactor, blood clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3 b.6.1.3 b.18.1.2 b.18.1.2
Probab=27.75 E-value=28 Score=31.80 Aligned_cols=33 Identities=12% Similarity=0.178 Sum_probs=28.9
Q ss_pred EEEecccccEEEEeCCCCCCcCCCeEEEEeecC
Q 030240 102 KVKLNKSGPFYFISGTKGSCEKGQKLIVVVMSS 134 (181)
Q Consensus 102 ~v~L~~~G~~YFic~v~~HC~~GmKl~I~V~~~ 134 (181)
.+..+++|.+.|-|-+..|-..||...+.|...
T Consensus 296 ~~~~~~pG~w~~hch~~~h~~~Gm~~~~~V~~~ 328 (647)
T 1sdd_B 296 EMKASKPGWWLLDTEVGEIQRAGMQTPFLIVDR 328 (647)
T ss_dssp EEECCSSEEEEEECCCHHHHTTTCEEEEEEECT
T ss_pred EEEeccceEeecccCcccccccccccceeeecc
Confidence 556788999999999999999999999999643
No 96
>2l8d_A Lamin-B receptor; DNA binding protein; NMR {Gallus gallus}
Probab=27.44 E-value=78 Score=21.06 Aligned_cols=46 Identities=20% Similarity=0.404 Sum_probs=29.4
Q ss_pred CCceecCCEEEeeeeCCCCeEEEEccccCCCCCCCCCcc--cccCCCcEEEec
Q 030240 56 KTRFQVGDSLVWKYDATRDSVLQVTKEAYLSCNTSSPVA--EYRDGNTKVKLN 106 (181)
Q Consensus 56 ~~~f~vGD~LvF~y~~~~HsV~~V~~~~y~~C~~~~~~~--~~s~G~~~v~L~ 106 (181)
..+|.+||++.=+| +|.+.-+++.=.+++ ..+++. .|.+| +..+|.
T Consensus 7 ~~~~~vgd~VmaRW-~Gd~~yYparI~Si~---s~~~~Y~V~fKdg-T~e~L~ 54 (66)
T 2l8d_A 7 NRKYADGEVVMGRW-PGSVLYYEVQVTSYD---DASHLYTVKYKDG-TELALK 54 (66)
T ss_dssp SSSSCSSCEEEEEC-TTSSCEEEEEEEEEE---TTTTEEEEEETTS-CEEEEE
T ss_pred ceEeecCCEEEEEc-CCCccceEEEEEEec---cCCceEEEEecCC-CEEeec
Confidence 35889999999999 777777766333444 344542 35664 444554
No 97
>1hfu_A Laccase 1; oxidoreductase, blue multi-copper oxidase, type-2 copper depleted, signal, glycoprotein; HET: MAN NAG NDG; 1.68A {Coprinus cinereus} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1a65_A*
Probab=26.78 E-value=80 Score=27.91 Aligned_cols=34 Identities=18% Similarity=0.270 Sum_probs=28.0
Q ss_pred EEEe-cccccEEEEeCCCCCCcCCCeEEEEeecCC
Q 030240 102 KVKL-NKSGPFYFISGTKGSCEKGQKLIVVVMSSR 135 (181)
Q Consensus 102 ~v~L-~~~G~~YFic~v~~HC~~GmKl~I~V~~~~ 135 (181)
++++ +++|+|||=|-...|=..|+...+.|....
T Consensus 96 ~f~~~~~~GT~wYH~H~~~q~~~Gl~G~liV~~~~ 130 (503)
T 1hfu_A 96 KFTPAGHAGTFWYHSHFGTQYCDGLRGPMVIYDDN 130 (503)
T ss_dssp EECCTTCCEEEEEEECSTTGGGGTCEEEEEEECTT
T ss_pred EEEeCCCCccEEEEecchhhhhCcceeeEEEcCCC
Confidence 5553 568999999999888888999999998754
No 98
>2j5w_A Ceruloplasmin, ferroxidase; oxidoreductase, plasma protein, copper transport, copper, transport, polymorphism, glycoprotein, multi-copper oxidase; HET: NAG; 2.80A {Homo sapiens} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1kcw_A*
Probab=26.71 E-value=42 Score=32.92 Aligned_cols=76 Identities=18% Similarity=0.117 Sum_probs=51.0
Q ss_pred CCceecCCEEEeeeeCC-----CCeEEEEc------cccCCCCCCCCCcccccCCCcEEEecccccEEEEeCCCCCCcCC
Q 030240 56 KTRFQVGDSLVWKYDAT-----RDSVLQVT------KEAYLSCNTSSPVAEYRDGNTKVKLNKSGPFYFISGTKGSCEKG 124 (181)
Q Consensus 56 ~~~f~vGD~LvF~y~~~-----~HsV~~V~------~~~y~~C~~~~~~~~~s~G~~~v~L~~~G~~YFic~v~~HC~~G 124 (181)
...+..||.|+.+.... -|++.+-. ...++.|... ..++-...++.+.+|++++-|-+..|=..|
T Consensus 633 ~l~~~~gd~v~~~v~~~g~~~~~Hgl~~~g~t~~~dG~~~~t~~i~----pg~~~t~~~~~~~~Gt~~~h~h~~~~~~~G 708 (1065)
T 2j5w_A 633 GLTMCKGDSVVWYLFSAGNEADVHGIYFSGNTYLWRGERRDTANLF----PQTSLTLHMWPDTEGTFNVECLTTDHYTGG 708 (1065)
T ss_dssp CCEEETTCCEEEEEECCCSTTCCEEEEETTCCEEETTEEESEEEEC----TTCEEEEEECCCSCEEEEEEECSHHHHHTT
T ss_pred ceEEeCCCEEEEEEEcCCCcceEEeeEEeCCceeecCeecceEeec----CCceEEEEEecCCCeEEEEecCCCcccCCC
Confidence 56899999999887642 35664421 1122334332 111112356777899999999999999999
Q ss_pred CeEEEEeecCC
Q 030240 125 QKLIVVVMSSR 135 (181)
Q Consensus 125 mKl~I~V~~~~ 135 (181)
|+..+.|....
T Consensus 709 m~g~~~V~~~~ 719 (1065)
T 2j5w_A 709 MKQKYTVNQCR 719 (1065)
T ss_dssp CEEEEEEECCS
T ss_pred cEEEEEEcCCc
Confidence 99999997653
No 99
>4dny_A Metalloprotease STCE; metzincin, bacterial zinc metalloprotease, O-linked glycoPro hydrolase; 1.61A {Escherichia coli}
Probab=25.79 E-value=23 Score=26.60 Aligned_cols=19 Identities=16% Similarity=0.080 Sum_probs=12.1
Q ss_pred cCCEEEeeeeCCCCeEEEE
Q 030240 61 VGDSLVWKYDATRDSVLQV 79 (181)
Q Consensus 61 vGD~LvF~y~~~~HsV~~V 79 (181)
.|+.+.|+-.++.++-+..
T Consensus 77 ~gK~V~~~S~AgY~S~V~y 95 (126)
T 4dny_A 77 EGKMVRFVSSAGYSSTVFY 95 (126)
T ss_dssp TTCEEEEEEECSSCEEEEE
T ss_pred CCCEEEEEEecCccEEEEE
Confidence 5677777777666555544
No 100
>2r7e_B Coagulation factor VIII; ceruloplasmin fold, cupper protein fold, C2 domain fold, ACU blood coagulation, disease mutation, glycoprotein; HET: NAG BMA MAN; 3.70A {Homo sapiens} PDB: 3cdz_B*
Probab=25.46 E-value=35 Score=32.37 Aligned_cols=77 Identities=12% Similarity=0.100 Sum_probs=44.7
Q ss_pred CceecCCEEEeeeeCC---CCeEE----EEccccCCCCCCCCCcccccCCCc---EEEec----------ccccEEEEeC
Q 030240 57 TRFQVGDSLVWKYDAT---RDSVL----QVTKEAYLSCNTSSPVAEYRDGNT---KVKLN----------KSGPFYFISG 116 (181)
Q Consensus 57 ~~f~vGD~LvF~y~~~---~HsV~----~V~~~~y~~C~~~~~~~~~s~G~~---~v~L~----------~~G~~YFic~ 116 (181)
..+++||+|+.++.+. .+++. .+.....|.= .+.......|.+ ++++. ..|++||-|.
T Consensus 201 Ir~~~GD~v~v~~~N~l~~~~siH~HG~~~~~~~~dG~--~~~~~~I~PG~~~tY~f~~~~~~gp~~~d~~~Gt~wYHsh 278 (770)
T 2r7e_B 201 IRAEVEDNIMVTFRNQASRPYSFYSSLISYEEDQRQGA--EPRKNFVKPNETKTYFWKVQHHMAPTKDEFDCKAWAYSSD 278 (770)
T ss_dssp CCCCSSSCEEEEEECCSSSCCCCCBTTCCCCCCSSSCT--TTTSSCCCSSCEEEEECCCCSSSSCCSSCCSEEEEEECCC
T ss_pred EEEEcCCEEEEEEEECCCCCcceeecccccccccCCCC--cCccCccCCCCeEEEEEEecCccCCccCCCCCeeEEeecc
Confidence 5678999999999764 22221 1111111000 001111233432 44555 6799999998
Q ss_pred CCC--CCcCCCeEEEEeecCC
Q 030240 117 TKG--SCEKGQKLIVVVMSSR 135 (181)
Q Consensus 117 v~~--HC~~GmKl~I~V~~~~ 135 (181)
+.. |...||...|.|....
T Consensus 279 ~~~~~q~~~GL~G~liV~~~~ 299 (770)
T 2r7e_B 279 VDLEKDVHSGLIGPLLVCHTN 299 (770)
T ss_dssp SSSSHHHHTSCCEEEEEECST
T ss_pred CCcHHHHhCCceeeEEECCCc
Confidence 876 6779999888887654
No 101
>2dv6_A Nitrite reductase; electron transfer, reduction, denitrification, oxidoreductase; 2.20A {Hyphomicrobium denitrificans}
Probab=25.36 E-value=42 Score=28.82 Aligned_cols=35 Identities=14% Similarity=0.306 Sum_probs=29.4
Q ss_pred EEEecccccEEEEeCCCCCCcCCCeEEEEeecCCC
Q 030240 102 KVKLNKSGPFYFISGTKGSCEKGQKLIVVVMSSRR 136 (181)
Q Consensus 102 ~v~L~~~G~~YFic~v~~HC~~GmKl~I~V~~~~~ 136 (181)
.|..+++|.++|-|-...|=..||...+.|.....
T Consensus 402 ~~~~~~pG~~~~hch~~~h~~~Gm~~~~~v~~~~~ 436 (447)
T 2dv6_A 402 DFKIDRAGRYILVDHALSRLEHGLVGFLNVDGPKN 436 (447)
T ss_dssp EEECCSCEEEEEEESSGGGGGGTCCEEEEECSCSC
T ss_pred EEECCCCEEEEEEecCcCccccCCEEEEEEeCCCC
Confidence 56778899999999999998889999999876543
No 102
>3tas_A Small laccase, multi-copper oxidase; two-domain laccase, oxidoreductase, secreted; HET: PG4; 2.30A {Streptomyces viridosporus} PDB: 3tbb_A 3tbc_A*
Probab=25.32 E-value=1.3e+02 Score=24.80 Aligned_cols=29 Identities=17% Similarity=0.204 Sum_probs=20.9
Q ss_pred ccccEEEEeCCCCC------CcCCCeEEEEeecCC
Q 030240 107 KSGPFYFISGTKGS------CEKGQKLIVVVMSSR 135 (181)
Q Consensus 107 ~~G~~YFic~v~~H------C~~GmKl~I~V~~~~ 135 (181)
..|+|||-|-+.+. =..||...|.|....
T Consensus 114 ~~gt~~YH~h~~~~~~~~~~~~~Gl~G~liV~~~~ 148 (313)
T 3tas_A 114 SAGYWHYHDHVVGTEHGTGGIRNGLYGPVIVRRKG 148 (313)
T ss_dssp SCEEEEEECSSSSSTTCHHHHHHTCEEEEEEECTT
T ss_pred CceEEEEeecCcccccchhhhhccccCceEeeccc
Confidence 45899998876543 236998888887654
No 103
>2r7e_B Coagulation factor VIII; ceruloplasmin fold, cupper protein fold, C2 domain fold, ACU blood coagulation, disease mutation, glycoprotein; HET: NAG BMA MAN; 3.70A {Homo sapiens} PDB: 3cdz_B*
Probab=25.20 E-value=8.3 Score=36.67 Aligned_cols=73 Identities=16% Similarity=0.153 Sum_probs=45.7
Q ss_pred CceecCCEEEeeeeCC-----CCeEE------EE-ccccCCCCCCCCCcccccCCC--cEEEecccccEEEEeCCCCCCc
Q 030240 57 TRFQVGDSLVWKYDAT-----RDSVL------QV-TKEAYLSCNTSSPVAEYRDGN--TKVKLNKSGPFYFISGTKGSCE 122 (181)
Q Consensus 57 ~~f~vGD~LvF~y~~~-----~HsV~------~V-~~~~y~~C~~~~~~~~~s~G~--~~v~L~~~G~~YFic~v~~HC~ 122 (181)
.+++.||++++.+-+. .|.+. +| ....+ ..+.+...-.+. ..+..+++|.+.|-|-+..|-.
T Consensus 370 l~v~~Ge~vr~rliN~g~~~~~H~fHlhGh~f~Vv~~dg~----~~Dtv~l~Pg~~~~v~~~ad~pG~w~~hcH~~~H~~ 445 (770)
T 2r7e_B 370 LVMAQDQRIRWYLLSMGSNENIHSIHFSGHVFTVRKKEEY----KMALYNLYPGVFETVEMLPSKAGIWRVECLIGEHLH 445 (770)
T ss_dssp CCCCSSSCEEEECCCCCSSSCCCEEEBSSCCEECCSSSCC----EESEEECCTTCCCEEEECCSSCBCCCBCCCSHHHHT
T ss_pred eEEeCCCEEEEEEEeCCCCcceEEEEEcCCEEEEEecCCc----eeeEEEECCCeEEEEEEEeCCCCceEEEeccccccc
Confidence 5688999999988652 35442 22 11110 001111112222 2456678999999999999999
Q ss_pred CCCeEEEEeec
Q 030240 123 KGQKLIVVVMS 133 (181)
Q Consensus 123 ~GmKl~I~V~~ 133 (181)
.||...+.|.+
T Consensus 446 ~GM~~~~~V~s 456 (770)
T 2r7e_B 446 AGMSTLFLVYS 456 (770)
T ss_dssp TBCCCCCCBCC
T ss_pred ccccccccccc
Confidence 99998888843
No 104
>2y7l_A NT_ALS9-2, agglutinin-like ALS9 protein; cell adhesion, adhesin, peptide binding protein; 1.49A {Candida albicans} PDB: 2y7m_A 2y7n_A 2y7o_A 2ylh_A
Probab=25.11 E-value=31 Score=29.56 Aligned_cols=34 Identities=29% Similarity=0.477 Sum_probs=25.6
Q ss_pred CceecCCEE------EeeeeCCCCeEEEE-ccccCCCCCCC
Q 030240 57 TRFQVGDSL------VWKYDATRDSVLQV-TKEAYLSCNTS 90 (181)
Q Consensus 57 ~~f~vGD~L------vF~y~~~~HsV~~V-~~~~y~~C~~~ 90 (181)
..++.||+. ||||...+..|... +...|..|++.
T Consensus 43 s~v~~GDtFtL~MP~VfKf~~~~t~v~L~a~G~~yAtC~~~ 83 (312)
T 2y7l_A 43 TTADPGDTFTLILPCVFKFITTQTSVDLTADGVSYATCDFN 83 (312)
T ss_dssp TTCCTTCEEEEEEETEEEESSSCSEEEEEETTEEEEEEEEE
T ss_pred CcCCCCCEEEEecccEEEEccCCceEEEecCCeEEEEEecc
Confidence 578899997 78988777777554 76677777664
No 105
>3rrq_A Protein PD-1, programmed cell death protein 1; programmed death-1, costimulatory, immune system; 2.10A {Homo sapiens}
Probab=24.76 E-value=30 Score=24.25 Aligned_cols=11 Identities=9% Similarity=0.009 Sum_probs=5.6
Q ss_pred CCeEEEEeecC
Q 030240 124 GQKLIVVVMSS 134 (181)
Q Consensus 124 GmKl~I~V~~~ 134 (181)
+.+..++|...
T Consensus 106 s~~~~L~V~~~ 116 (129)
T 3rrq_A 106 SLRAELRVTER 116 (129)
T ss_dssp CCCEEEEEECC
T ss_pred eceEEEEEecC
Confidence 34455566543
No 106
>3kw8_A Laccase, putative copper oxidase; two-domain laccase, oxidoreductase, multicopper blue protein; HET: PG4 PGE; 2.29A {Streptomyces coelicolor} PDB: 4gxf_A* 4gy4_A*
Probab=24.72 E-value=99 Score=24.91 Aligned_cols=78 Identities=17% Similarity=0.175 Sum_probs=43.3
Q ss_pred CceecCCEEEeeeeCC---CCeEEEE--cc-ccCCCCCCCCCcccccCCC---cEEEecc-------------cccEEEE
Q 030240 57 TRFQVGDSLVWKYDAT---RDSVLQV--TK-EAYLSCNTSSPVAEYRDGN---TKVKLNK-------------SGPFYFI 114 (181)
Q Consensus 57 ~~f~vGD~LvF~y~~~---~HsV~~V--~~-~~y~~C~~~~~~~~~s~G~---~~v~L~~-------------~G~~YFi 114 (181)
.+++.||+|+.++.+. .++|..= .. ...|.-.... .....|. .++++++ .|++||-
T Consensus 38 i~~~~Gd~v~v~~~N~~~~~~siH~HG~~~~~~~DG~~~t~--~~i~pG~~~~Y~f~~~~~~~~~~g~~~~~~~gt~~YH 115 (276)
T 3kw8_A 38 IEVNEGDTLHIEFTNTMDVRASLHVHGLDYEISSDGTAMNK--SDVEPGGTRTYTWRTHKPGRRDDGTWRPGSAGYWHYH 115 (276)
T ss_dssp EEEETTCEEEEEEEECSSSCBCCEESSSBCCGGGSCCTTTT--CSBCTTCEEEEEEECCCCEECTTSCEECCSCEEEEEE
T ss_pred EEEECCCEEEEEEEECCCCCccEeecCcccCCccCCCcCCc--CCCCCCCEEEEEEEcCCccccccCccCCCCCEEEEEe
Confidence 4578999999999763 3333210 00 0111100000 0123333 2556654 4788899
Q ss_pred eCCCC------CCcCCCeEEEEeecCCC
Q 030240 115 SGTKG------SCEKGQKLIVVVMSSRR 136 (181)
Q Consensus 115 c~v~~------HC~~GmKl~I~V~~~~~ 136 (181)
|-+.+ |=..||.-.+.|.....
T Consensus 116 ~h~~~~~~~~~~~~~Gl~G~liV~~~~~ 143 (276)
T 3kw8_A 116 DHVVGTEHGTGGIRNGLYGPVIVRRKGD 143 (276)
T ss_dssp CSSSSSTTCHHHHHHTCEEEEEEECTTC
T ss_pred cCccccccchhhhhCccEEEEEEecCCC
Confidence 98754 34579999998887553
No 107
>1wjj_A Hypothetical protein F20O9.120; DNA-binding protein-related, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.40.4.3
Probab=24.15 E-value=24 Score=26.74 Aligned_cols=34 Identities=15% Similarity=0.333 Sum_probs=25.7
Q ss_pred eEEEEeCCCCCccCCCCCCccchhcccC-CceecCCEEEeeee
Q 030240 29 RDILVGGKTDSWKIPSSQSDSLNQWAEK-TRFQVGDSLVWKYD 70 (181)
Q Consensus 29 ~~~~VGg~~G~W~~~~~~~~~Y~~WA~~-~~f~vGD~LvF~y~ 70 (181)
.+.+|||+.| .+ .++.|... ..++.||++.+..-
T Consensus 64 ~~~lVgDeTG--~I------~ftlW~e~~~~l~~Gd~v~i~na 98 (145)
T 1wjj_A 64 VECLIGDETG--CI------LFTARNDQVDLMKPGATVILRNS 98 (145)
T ss_dssp EEEEEECSSC--EE------EEEECTTHHHHTCTTCEEEEEEE
T ss_pred EEEEEEcCCc--EE------EEEEecCCcCcCCCCCEEEEecc
Confidence 4578999988 43 38889864 35889999998763
No 108
>2dig_A Lamin-B receptor; tudor domain, integral nuclear envelope inner membrane protein, nuclear protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=23.30 E-value=1e+02 Score=20.53 Aligned_cols=46 Identities=20% Similarity=0.340 Sum_probs=29.4
Q ss_pred CCceecCCEEEeeeeCCCCeEEEEccccCCCCCCCCCcc--cccCCCcEEEec
Q 030240 56 KTRFQVGDSLVWKYDATRDSVLQVTKEAYLSCNTSSPVA--EYRDGNTKVKLN 106 (181)
Q Consensus 56 ~~~f~vGD~LvF~y~~~~HsV~~V~~~~y~~C~~~~~~~--~~s~G~~~v~L~ 106 (181)
..+|.+||++.=+|. |.+..+++.=.+++ ..+++. .|.+| +..+|.
T Consensus 10 ~~~f~vgd~VmaRW~-Gd~~yYparItSit---s~~~~Y~VkfKdg-T~e~L~ 57 (68)
T 2dig_A 10 SRKFADGEVVRGRWP-GSSLYYEVEILSHD---STSQLYTVKYKDG-TELELK 57 (68)
T ss_dssp CCSSCSSCEEEEECT-TTCCEEEEEEEEEE---TTTTEEEEECTTS-CEEEEE
T ss_pred ceEeecCCEEEEEcc-CCccceEEEEEEec---cCCceEEEEecCC-CEEEec
Confidence 358999999999998 77777665333444 344542 35664 445554
No 109
>3aw5_A Multicopper oxidase; beta barrel, oxidoreductase; 2.00A {Pyrobaculum aerophilum}
Probab=23.10 E-value=25 Score=30.79 Aligned_cols=73 Identities=18% Similarity=0.164 Sum_probs=45.6
Q ss_pred CceecCCEEEeeeeCC---CCeEEE----Ecc--ccCCCCCCCCCcccccCCC---cEEEec-ccccEEEEeC----CCC
Q 030240 57 TRFQVGDSLVWKYDAT---RDSVLQ----VTK--EAYLSCNTSSPVAEYRDGN---TKVKLN-KSGPFYFISG----TKG 119 (181)
Q Consensus 57 ~~f~vGD~LvF~y~~~---~HsV~~----V~~--~~y~~C~~~~~~~~~s~G~---~~v~L~-~~G~~YFic~----v~~ 119 (181)
..++.||+|+.++.+. .+++.. ++. +....|- ...|. .+++++ .+|+|||=|- ...
T Consensus 40 i~~~~Gd~v~v~~~N~l~~~tsiHwHG~~~~~~~DG~~~~~-------i~PG~~~~Y~f~~~~~~GT~wYH~H~~~~~~~ 112 (448)
T 3aw5_A 40 IILRRGQRVDMTLKNKLTEPTIVHWHGFDVNWHNDAHPSFA-------ITPGESYNYSFDVVNRAGTYLYHPHPHGLTAK 112 (448)
T ss_dssp EEEETTCEEEEEEEECSSSCBCEEEETCCCCHHHHTCGGGC-------BCTTCEEEEEEECCSCSEEEEEEECCTTTHHH
T ss_pred EEEeCCCEEEEEEEECCCCceeEEeCCccCCCccCCCCCcc-------CCCCCEEEEEEEcCCCCCceEeccCCCCchHH
Confidence 4588999999999764 344422 110 0011121 22333 267777 6899999998 334
Q ss_pred CCcCCCeEEEEeecCCC
Q 030240 120 SCEKGQKLIVVVMSSRR 136 (181)
Q Consensus 120 HC~~GmKl~I~V~~~~~ 136 (181)
|=..||...+.|.....
T Consensus 113 q~~~Gl~G~liV~~~~~ 129 (448)
T 3aw5_A 113 QFYMGQLGLVIVEDSGS 129 (448)
T ss_dssp HHHTTCCEEEEEECTTT
T ss_pred HHhccceEEEEEeCCcc
Confidence 55689999999987543
No 110
>1sdd_A Coagulation factor V; copper-binding protein, cofactor, blood clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3 b.6.1.3
Probab=23.00 E-value=1.1e+02 Score=25.14 Aligned_cols=78 Identities=10% Similarity=0.029 Sum_probs=43.5
Q ss_pred CceecCCEEEeeeeCC---CCeEEE----EccccCCC-CCCCCC------cccccCCCc---EEEeccc----------c
Q 030240 57 TRFQVGDSLVWKYDAT---RDSVLQ----VTKEAYLS-CNTSSP------VAEYRDGNT---KVKLNKS----------G 109 (181)
Q Consensus 57 ~~f~vGD~LvF~y~~~---~HsV~~----V~~~~y~~-C~~~~~------~~~~s~G~~---~v~L~~~----------G 109 (181)
.+++.||+|++++.+. .+++.. ++.+ -|. ....++ ......|.. .+++++. |
T Consensus 62 I~v~~Gd~v~v~~~N~l~~~~siH~HGl~~~~~-~dG~~~~dg~~~~~~~~~~I~PG~~~~Y~f~~~~~~gp~~~d~~~G 140 (306)
T 1sdd_A 62 LYAEVGDIMKVHFKNKAHKPLSIHAQGIKYSKF-SEGASYSDHTLPMEKMDDAVAPGQEYTYEWIISEHSGPTHDDPPCL 140 (306)
T ss_dssp EEEETTCEEEEEEEECSSSCBCCEEESSCCCTT-TSCCCSCCCCCHHHHTTTCBCTTCEEEEEEECCGGGSCCSSSCSEE
T ss_pred EEEeCCCEEEEEEEECCCCcccEeecceecccc-cCCCccCCCCcccccCCCccCCCCeEEEEEEeCCccCCCCCCCCce
Confidence 5688999999999763 233321 1110 011 111110 011233432 5666554 7
Q ss_pred cEEEEeCCCC--CCcCCCeEEEEeecCC
Q 030240 110 PFYFISGTKG--SCEKGQKLIVVVMSSR 135 (181)
Q Consensus 110 ~~YFic~v~~--HC~~GmKl~I~V~~~~ 135 (181)
++||-|-... |-..|+.-.+.|....
T Consensus 141 T~wYHsH~~~~~q~~~GL~G~liV~~~~ 168 (306)
T 1sdd_A 141 THIYYSYVNLVEDFNSGLIGPLLICKKG 168 (306)
T ss_dssp EEEEECCSSSHHHHHTTCCEEEEEECTT
T ss_pred EEEEeccCCchhhhccCceEEEEEccCC
Confidence 9999998654 5568998888887643
No 111
>2j5w_A Ceruloplasmin, ferroxidase; oxidoreductase, plasma protein, copper transport, copper, transport, polymorphism, glycoprotein, multi-copper oxidase; HET: NAG; 2.80A {Homo sapiens} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1kcw_A*
Probab=22.08 E-value=60 Score=31.78 Aligned_cols=76 Identities=8% Similarity=0.107 Sum_probs=50.5
Q ss_pred CCceecCCEEEeeeeCC-----CCeEEEEccccCCCCCCCCCcc----cccCCC---cEEEecccccEEEEeCCCCCCcC
Q 030240 56 KTRFQVGDSLVWKYDAT-----RDSVLQVTKEAYLSCNTSSPVA----EYRDGN---TKVKLNKSGPFYFISGTKGSCEK 123 (181)
Q Consensus 56 ~~~f~vGD~LvF~y~~~-----~HsV~~V~~~~y~~C~~~~~~~----~~s~G~---~~v~L~~~G~~YFic~v~~HC~~ 123 (181)
..+++.|++++|++-+. .|++. +..-.+. .++.. ....|. ..++.+++|.|+|.|-...|=+.
T Consensus 272 ~l~v~~Ge~vRlRliNag~~~~~~~~~-i~Gh~f~----v~p~~~dtv~I~pGer~dVlv~~~~pG~y~i~~h~~~h~~~ 346 (1065)
T 2j5w_A 272 GLSMCAEDRVKWYLFGMGNEVDVHAAF-FHGQALT----NKNYRIDTINLFPATLFDAYMVAQNPGEWMLSCQNLNHLKA 346 (1065)
T ss_dssp CCEEETTCEEEEEEEECSSTTCCEEEE-ETTCCEE----ETTEEESEEEECBTCEEEEEEECCSCEEEEEEECSHHHHHT
T ss_pred ceEECCCCEEEEEEEcCCcccceeEEE-EcCCEEE----ECCeeecEEEECCCcEEEEEEEeCCCeeEEEEecCcchhhC
Confidence 45789999999999653 23332 2222222 12211 122333 25677889999999999999899
Q ss_pred CCeEEEEeecCCC
Q 030240 124 GQKLIVVVMSSRR 136 (181)
Q Consensus 124 GmKl~I~V~~~~~ 136 (181)
||...+.|.....
T Consensus 347 Gm~~~~~V~~~~~ 359 (1065)
T 2j5w_A 347 GLQAFFQVQECNK 359 (1065)
T ss_dssp TCEEEEEEECSCC
T ss_pred CCEEEEEEecCCC
Confidence 9999999987654
No 112
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=22.00 E-value=39 Score=24.66 Aligned_cols=18 Identities=11% Similarity=0.366 Sum_probs=15.2
Q ss_pred ccCCceecCCEEEeeeeC
Q 030240 54 AEKTRFQVGDSLVWKYDA 71 (181)
Q Consensus 54 A~~~~f~vGD~LvF~y~~ 71 (181)
+..+..+.||.++|....
T Consensus 87 V~~~~L~~GD~~~F~~~~ 104 (130)
T 1wid_A 87 VKEKNLRAGDVVSFSRSN 104 (130)
T ss_dssp HHHTTCCTTCEEEEEECC
T ss_pred HHHcCCCCCCEEEEEEec
Confidence 356889999999999975
No 113
>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A
Probab=20.61 E-value=75 Score=22.29 Aligned_cols=32 Identities=25% Similarity=0.456 Sum_probs=24.1
Q ss_pred eEEEEeCCCCCccCCCCCCccchhcc--cCCceecCCEEEee
Q 030240 29 RDILVGGKTDSWKIPSSQSDSLNQWA--EKTRFQVGDSLVWK 68 (181)
Q Consensus 29 ~~~~VGg~~G~W~~~~~~~~~Y~~WA--~~~~f~vGD~LvF~ 68 (181)
...++||+.| ++ .++.|. ....++.||++.++
T Consensus 37 ~~~~l~DeTG--~I------~~t~W~~~~~~~~~~G~~V~i~ 70 (109)
T 2kbn_A 37 QVGLLGDETG--II------KFTIWKNAELPLLEQGESYLLR 70 (109)
T ss_dssp EEEEEECTTC--CE------EEEEEGGGCCCCCCTTCEEEEE
T ss_pred EEEEEECCCC--eE------EEEEECcccccccCCCCEEEEE
Confidence 3467888887 33 388897 33588999999988
Done!