Query 030241
Match_columns 181
No_of_seqs 135 out of 737
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 17:18:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030241.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030241hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4bbr_M Transcription initiatio 100.0 2.6E-45 9.1E-50 315.8 8.6 164 3-167 21-203 (345)
2 3k7a_M Transcription initiatio 100.0 4.5E-42 1.6E-46 295.5 3.0 162 3-167 21-203 (345)
3 3k1f_M Transcription initiatio 99.8 1.1E-21 3.6E-26 152.1 4.0 66 3-68 21-88 (197)
4 1dl6_A Transcription factor II 99.8 6.9E-20 2.4E-24 119.2 4.5 47 3-50 11-57 (58)
5 1pft_A TFIIB, PFTFIIBN; N-term 99.7 5.2E-17 1.8E-21 102.4 4.8 44 4-48 6-49 (50)
6 1ais_B TFB TFIIB, protein (tra 99.4 1E-12 3.5E-17 103.9 7.3 62 99-160 3-71 (200)
7 1c9b_A General transcription f 99.2 3.7E-11 1.3E-15 95.4 8.7 60 101-160 1-67 (207)
8 1ais_B TFB TFIIB, protein (tra 98.2 2.2E-06 7.4E-11 67.2 7.1 53 108-160 108-167 (200)
9 1c9b_A General transcription f 98.0 1.9E-05 6.5E-10 62.2 7.4 54 107-160 101-161 (207)
10 1zp2_A RNA polymerase II holoe 97.9 3.4E-05 1.2E-09 62.0 8.8 56 105-160 28-91 (235)
11 2i53_A Cyclin K; cell cycle, t 97.6 0.00016 5.5E-09 58.5 8.1 55 106-160 42-103 (258)
12 3rgf_B Cyclin-C; protein kinas 97.6 0.00021 7.2E-09 59.2 8.6 59 102-160 39-105 (285)
13 2ivx_A Cyclin-T2; transcriptio 97.6 0.00015 5.2E-09 58.7 7.6 55 106-160 32-93 (257)
14 1jkw_A Cyclin H; cell cycle, c 97.6 0.00021 7E-09 60.4 8.3 60 101-160 52-121 (323)
15 2pk2_A Cyclin-T1, protein TAT; 97.4 0.00023 7.9E-09 61.0 6.5 55 106-160 39-100 (358)
16 4bbr_M Transcription initiatio 97.2 5.4E-05 1.8E-09 64.6 0.0 54 107-160 234-294 (345)
17 1qxf_A GR2, 30S ribosomal prot 96.9 0.00034 1.2E-08 45.7 1.7 30 4-34 8-37 (66)
18 3k7a_M Transcription initiatio 96.8 0.00018 6.1E-09 61.3 0.0 52 109-160 236-294 (345)
19 2js4_A UPF0434 protein BB2007; 96.8 0.001 3.6E-08 44.1 3.6 31 2-34 7-37 (70)
20 3j20_W 30S ribosomal protein S 96.8 0.00045 1.5E-08 44.8 1.6 31 4-35 16-46 (63)
21 2jr6_A UPF0434 protein NMA0874 96.7 0.0012 4.2E-08 43.5 3.3 31 2-34 7-37 (68)
22 2jny_A Uncharacterized BCR; st 96.7 0.0014 4.7E-08 43.1 3.4 29 3-33 10-38 (67)
23 1vq8_Z 50S ribosomal protein L 96.5 0.00092 3.2E-08 45.8 2.0 31 4-36 28-58 (83)
24 2xzm_6 RPS27E; ribosome, trans 96.5 0.00077 2.6E-08 45.7 1.5 31 4-35 33-63 (81)
25 2pk7_A Uncharacterized protein 96.5 0.0013 4.4E-08 43.5 2.5 30 3-34 8-37 (69)
26 2hf1_A Tetraacyldisaccharide-1 96.5 0.0011 3.8E-08 43.7 2.0 29 4-34 9-37 (68)
27 3u5c_b RP61, YS20, 40S ribosom 96.5 0.00089 3.1E-08 45.5 1.5 31 4-35 35-65 (82)
28 3iz6_X 40S ribosomal protein S 96.2 0.0014 4.8E-08 44.9 1.1 31 4-35 37-67 (86)
29 3m03_A ORC6, origin recognitio 96.1 0.016 5.3E-07 40.6 6.3 50 111-160 5-65 (95)
30 2b9r_A Human cyclin B1; cell c 96.0 0.022 7.4E-07 46.4 7.7 52 106-157 39-97 (269)
31 2cch_B Cyclin A2, cyclin-A; co 95.7 0.03 1E-06 45.3 7.4 54 106-159 40-101 (260)
32 3j20_Y 30S ribosomal protein S 95.5 0.0093 3.2E-07 36.8 2.9 28 4-33 20-47 (50)
33 2w96_A G1/S-specific cyclin-D1 95.4 0.046 1.6E-06 44.4 7.4 55 106-160 58-120 (271)
34 2akl_A PHNA-like protein PA012 95.1 0.044 1.5E-06 40.3 5.7 28 3-33 27-54 (138)
35 1zp2_A RNA polymerase II holoe 94.4 0.05 1.7E-06 43.2 5.1 53 108-160 134-193 (235)
36 4ell_A Retinoblastoma-associat 94.4 0.14 4.7E-06 44.6 8.1 55 106-160 280-344 (411)
37 3h4c_A Transcription factor TF 94.4 0.19 6.4E-06 40.0 8.0 53 108-160 15-77 (260)
38 2r7g_A PP110, retinoblastoma-a 94.2 0.18 6E-06 43.0 8.1 58 103-160 213-280 (347)
39 2kpi_A Uncharacterized protein 94.0 0.049 1.7E-06 34.3 3.3 27 3-33 10-38 (56)
40 3g33_B CCND3 protein; Ser/Thr 93.9 0.14 4.9E-06 42.5 7.0 54 105-158 71-132 (306)
41 1g3n_C V-cyclin; cyclin-depend 93.6 0.16 5.6E-06 40.8 6.8 54 106-159 52-113 (257)
42 2ivx_A Cyclin-T2; transcriptio 93.4 0.22 7.4E-06 39.9 7.0 53 108-160 146-206 (257)
43 2k4x_A 30S ribosomal protein S 93.2 0.045 1.6E-06 34.3 2.2 28 3-32 18-45 (55)
44 4elj_A Retinoblastoma-associat 92.9 0.38 1.3E-05 44.2 8.6 57 104-160 523-589 (656)
45 1w98_B Cyclin E, G1/S-specific 92.9 0.36 1.2E-05 39.4 7.8 52 106-157 51-110 (283)
46 3rgf_B Cyclin-C; protein kinas 92.7 0.24 8.3E-06 40.5 6.5 52 108-159 157-215 (285)
47 1k81_A EIF-2-beta, probable tr 92.4 0.051 1.8E-06 31.1 1.4 28 5-32 2-30 (36)
48 2i53_A Cyclin K; cell cycle, t 92.3 0.24 8.3E-06 39.5 6.0 53 108-160 151-214 (258)
49 2k5r_A Uncharacterized protein 92.3 0.059 2E-06 37.7 2.0 31 1-33 6-63 (97)
50 2f2c_A Cyclin homolog, V-cycli 92.1 0.5 1.7E-05 37.8 7.6 54 106-159 53-114 (254)
51 1twf_I B12.6, DNA-directed RNA 92.0 0.079 2.7E-06 38.4 2.4 34 1-34 2-37 (122)
52 1qyp_A RNA polymerase II; tran 91.7 0.13 4.4E-06 32.1 2.9 31 4-35 16-55 (57)
53 1nui_A DNA primase/helicase; z 91.5 0.13 4.3E-06 41.4 3.4 28 4-32 15-42 (255)
54 3h0g_I DNA-directed RNA polyme 91.4 0.15 5.1E-06 36.4 3.3 31 2-34 3-37 (113)
55 1twf_L ABC10-alpha, DNA-direct 91.2 0.082 2.8E-06 34.8 1.6 27 4-33 29-56 (70)
56 3j21_i 50S ribosomal protein L 90.6 0.15 5.1E-06 34.6 2.5 32 3-36 35-66 (83)
57 2qdj_A Retinoblastoma-associat 90.2 0.56 1.9E-05 39.2 6.2 44 111-154 5-58 (304)
58 6rxn_A Rubredoxin; electron tr 90.0 0.083 2.8E-06 31.9 0.7 18 1-22 2-19 (46)
59 3jyw_9 60S ribosomal protein L 90.0 0.17 5.8E-06 33.4 2.3 32 3-36 26-57 (72)
60 1ffk_W Ribosomal protein L37AE 89.9 0.15 5E-06 33.9 1.9 32 3-36 27-58 (73)
61 1e8j_A Rubredoxin; iron-sulfur 89.8 0.12 4.1E-06 32.0 1.4 11 24-34 4-14 (52)
62 3cc2_Z 50S ribosomal protein L 89.6 0.15 5.1E-06 36.8 1.9 32 3-36 60-91 (116)
63 3iz5_m 60S ribosomal protein L 89.5 0.19 6.7E-06 34.7 2.4 30 3-34 36-65 (92)
64 4rxn_A Rubredoxin; electron tr 89.1 0.17 6E-06 31.5 1.7 18 1-22 1-18 (54)
65 3izc_m 60S ribosomal protein R 88.8 0.22 7.4E-06 34.5 2.2 30 3-34 36-65 (92)
66 4a17_Y RPL37A, 60S ribosomal p 87.9 0.26 8.8E-06 34.8 2.1 29 4-34 37-65 (103)
67 2pk2_A Cyclin-T1, protein TAT; 87.4 0.32 1.1E-05 41.3 2.9 52 109-160 154-213 (358)
68 1dxg_A Desulforedoxin; non-hem 86.6 0.37 1.3E-05 27.3 2.0 26 4-32 7-32 (36)
69 3j21_g 50S ribosomal protein L 85.4 0.26 8.9E-06 30.4 0.9 23 4-32 15-37 (51)
70 3qt1_I DNA-directed RNA polyme 85.4 0.5 1.7E-05 34.8 2.6 29 3-33 24-56 (133)
71 2b9r_A Human cyclin B1; cell c 85.1 1.2 4.2E-05 35.8 5.2 51 108-158 138-195 (269)
72 1jkw_A Cyclin H; cell cycle, c 85.0 1.4 4.8E-05 36.7 5.6 23 139-161 208-230 (323)
73 1gh9_A 8.3 kDa protein (gene M 84.9 0.48 1.7E-05 31.1 2.2 27 4-34 5-31 (71)
74 2v3b_B Rubredoxin 2, rubredoxi 83.7 0.39 1.3E-05 29.9 1.2 12 24-35 4-15 (55)
75 1tfi_A Transcriptional elongat 83.6 1.2 3.9E-05 27.2 3.3 29 3-32 9-46 (50)
76 1wii_A Hypothetical UPF0222 pr 82.4 0.47 1.6E-05 32.3 1.3 31 5-35 25-59 (85)
77 1gnf_A Transcription factor GA 82.0 0.5 1.7E-05 28.4 1.2 31 3-33 4-35 (46)
78 1dx8_A Rubredoxin; electron tr 81.3 0.58 2E-05 30.6 1.4 13 23-35 7-19 (70)
79 2apo_B Ribosome biogenesis pro 81.2 0.52 1.8E-05 30.0 1.1 24 2-33 5-28 (60)
80 2vut_I AREA, nitrogen regulato 80.9 0.6 2.1E-05 27.6 1.2 31 4-34 2-33 (43)
81 3ga8_A HTH-type transcriptiona 80.5 0.67 2.3E-05 30.5 1.6 30 3-33 2-46 (78)
82 3u50_C Telomerase-associated p 80.4 1 3.4E-05 34.5 2.7 25 5-32 44-68 (172)
83 2kn9_A Rubredoxin; metalloprot 80.1 0.6 2.1E-05 31.5 1.2 17 21-37 25-41 (81)
84 2ct7_A Ring finger protein 31; 78.2 1.4 4.9E-05 29.4 2.7 27 5-33 27-53 (86)
85 3o9x_A Uncharacterized HTH-typ 78.0 0.98 3.3E-05 32.1 1.9 32 3-35 2-48 (133)
86 4elj_A Retinoblastoma-associat 78.0 5.6 0.00019 36.5 7.2 47 111-157 7-64 (656)
87 2w96_A G1/S-specific cyclin-D1 77.9 5.4 0.00018 31.9 6.5 49 108-156 157-216 (271)
88 4gat_A Nitrogen regulatory pro 77.5 0.75 2.6E-05 29.8 1.0 32 3-34 9-41 (66)
89 2cch_B Cyclin A2, cyclin-A; co 76.2 3.3 0.00011 33.0 4.7 51 108-158 139-198 (260)
90 1f5q_B Gamma herpesvirus cycli 75.4 6 0.0002 31.6 6.1 51 107-157 51-108 (252)
91 1g3n_C V-cyclin; cyclin-depend 75.1 3.7 0.00013 32.6 4.8 50 108-157 151-211 (257)
92 1vk6_A NADH pyrophosphatase; 1 74.5 2.4 8.3E-05 34.3 3.6 30 3-34 107-136 (269)
93 1s24_A Rubredoxin 2; electron 74.3 0.88 3E-05 31.1 0.7 16 21-36 33-48 (87)
94 2e9h_A EIF-5, eukaryotic trans 72.0 1.7 5.8E-05 32.8 1.9 29 4-32 104-135 (157)
95 3h0g_L DNA-directed RNA polyme 71.1 1.8 6.3E-05 27.7 1.6 27 4-33 22-48 (63)
96 2f2c_A Cyclin homolog, V-cycli 71.1 10 0.00036 29.9 6.5 46 110-155 154-210 (254)
97 2kdx_A HYPA, hydrogenase/ureas 70.0 1.9 6.5E-05 30.6 1.7 22 13-34 63-84 (119)
98 4e2x_A TCAB9; kijanose, tetron 69.4 1.8 6.2E-05 36.4 1.7 16 24-39 54-69 (416)
99 1yk4_A Rubredoxin, RD; electro 68.8 2.2 7.5E-05 26.1 1.6 13 24-36 3-15 (52)
100 3dfx_A Trans-acting T-cell-spe 68.0 1.2 4E-05 28.6 0.2 31 4-34 8-39 (63)
101 2aus_D NOP10, ribosome biogene 67.6 1.6 5.5E-05 27.7 0.8 24 2-33 4-27 (60)
102 1d0q_A DNA primase; zinc-bindi 67.4 4.3 0.00015 27.9 3.1 26 5-30 39-65 (103)
103 2jrp_A Putative cytoplasmic pr 67.0 3.9 0.00014 27.4 2.7 29 1-34 1-29 (81)
104 2g2k_A EIF-5, eukaryotic trans 66.9 1.8 6E-05 33.2 1.0 29 4-32 97-128 (170)
105 3cng_A Nudix hydrolase; struct 66.7 3.9 0.00014 30.6 3.0 27 3-31 3-33 (189)
106 2con_A RUH-035 protein, NIN on 66.0 2.6 8.9E-05 28.2 1.6 11 1-11 28-38 (79)
107 2jne_A Hypothetical protein YF 65.7 5.2 0.00018 27.8 3.1 28 1-33 31-58 (101)
108 2fiy_A Protein FDHE homolog; F 65.5 5.3 0.00018 33.2 3.7 32 2-33 221-263 (309)
109 1twf_I B12.6, DNA-directed RNA 65.2 6.8 0.00023 27.9 3.9 30 4-34 73-111 (122)
110 2kae_A GATA-type transcription 63.7 1.8 6.2E-05 28.3 0.5 10 23-32 8-17 (71)
111 1l1o_C Replication protein A 7 62.5 4.3 0.00015 30.9 2.5 26 5-33 45-72 (181)
112 2fnf_X Putative RAS effector N 62.4 5.7 0.00019 25.7 2.7 29 2-36 34-62 (72)
113 3q87_A Putative uncharacterize 61.8 1.5 5.1E-05 31.9 -0.3 17 17-33 93-109 (125)
114 1rfh_A RAS association (ralgds 61.0 5.8 0.0002 24.5 2.5 26 3-34 22-47 (59)
115 4esj_A Type-2 restriction enzy 60.6 5.5 0.00019 32.1 2.8 30 4-34 35-67 (257)
116 2jmo_A Parkin; IBR, E3 ligase, 60.5 5.3 0.00018 26.3 2.4 30 2-33 24-60 (80)
117 1vzi_A Desulfoferrodoxin; ferr 60.5 4.1 0.00014 29.4 2.0 28 4-34 8-35 (126)
118 3v2d_5 50S ribosomal protein L 59.6 3 0.0001 26.3 1.0 22 4-32 31-52 (60)
119 2kv1_A Methionine-R-sulfoxide 59.4 5.2 0.00018 29.0 2.3 31 20-50 17-49 (124)
120 1sfu_A 34L protein; protein/Z- 58.7 12 0.00041 24.6 3.8 27 111-137 31-57 (75)
121 2kao_A Methionine-R-sulfoxide 58.7 6.9 0.00023 28.3 2.8 32 19-50 16-49 (124)
122 1ovx_A ATP-dependent CLP prote 58.2 4.9 0.00017 26.0 1.8 26 3-30 18-47 (67)
123 2fiy_A Protein FDHE homolog; F 58.0 6 0.0002 32.9 2.8 30 3-32 182-217 (309)
124 3p8b_A DNA-directed RNA polyme 57.0 2.6 9E-05 28.3 0.3 23 1-31 21-43 (81)
125 3g33_B CCND3 protein; Ser/Thr 56.9 16 0.00054 29.9 5.2 48 110-157 173-231 (306)
126 4hc9_A Trans-acting T-cell-spe 56.3 3.8 0.00013 29.2 1.1 32 3-34 5-37 (115)
127 2ds5_A CLPX, ATP-dependent CLP 55.8 5.8 0.0002 24.1 1.8 25 3-29 11-39 (51)
128 1u5k_A Hypothetical protein; O 55.5 7 0.00024 30.7 2.7 28 4-31 151-178 (244)
129 2zkr_2 60S ribosomal protein L 55.3 4.2 0.00014 28.2 1.1 23 4-31 17-39 (97)
130 1ryq_A DNA-directed RNA polyme 54.7 3.4 0.00012 26.9 0.6 30 4-47 12-41 (69)
131 4gop_C Putative uncharacterize 54.1 8.6 0.00029 33.1 3.2 26 5-33 310-337 (444)
132 2au3_A DNA primase; zinc ribbo 51.6 9.6 0.00033 32.5 3.1 27 5-31 36-63 (407)
133 2lk0_A RNA-binding protein 5; 51.1 5.9 0.0002 21.5 1.1 13 20-32 2-14 (32)
134 3a43_A HYPD, hydrogenase nicke 51.0 4 0.00014 29.8 0.6 22 13-34 60-81 (139)
135 3mao_A Methionine-R-sulfoxide 50.6 5.9 0.0002 27.9 1.3 32 19-50 9-42 (105)
136 2zjr_Z 50S ribosomal protein L 50.5 8.1 0.00028 24.3 1.8 24 4-34 31-54 (60)
137 2k8d_A Peptide methionine sulf 49.1 9.1 0.00031 28.6 2.2 32 19-50 57-90 (151)
138 2riq_A Poly [ADP-ribose] polym 49.0 11 0.00036 28.5 2.6 23 4-32 79-101 (160)
139 3p2a_A Thioredoxin 2, putative 48.9 7.2 0.00025 27.4 1.6 33 4-36 6-38 (148)
140 2l1u_A MSRB2, methionine-R-sul 48.2 8.9 0.00031 28.4 2.0 32 19-50 33-66 (143)
141 2k1p_A Zinc finger RAN-binding 47.5 7.6 0.00026 21.3 1.2 13 20-32 3-15 (33)
142 2j6a_A Protein TRM112; transla 47.2 3.4 0.00012 30.6 -0.4 18 16-33 102-119 (141)
143 1vfy_A Phosphatidylinositol-3- 46.9 13 0.00046 23.8 2.6 29 2-34 10-38 (73)
144 3e0o_A Peptide methionine sulf 46.8 9 0.00031 28.4 1.9 32 19-50 38-71 (144)
145 2f9i_B Acetyl-coenzyme A carbo 46.4 3.9 0.00013 33.6 -0.2 40 4-48 31-80 (285)
146 3fia_A Intersectin-1; EH 1 dom 46.1 28 0.00096 24.7 4.4 59 111-170 53-115 (121)
147 3hcj_A MSRB, peptide methionin 46.1 8.4 0.00029 28.9 1.6 33 18-50 45-79 (154)
148 3cxk_A Methionine-R-sulfoxide 46.0 8.6 0.00029 29.1 1.7 32 19-50 69-102 (164)
149 2da7_A Zinc finger homeobox pr 45.7 15 0.00051 23.9 2.6 19 110-128 33-51 (71)
150 3irb_A Uncharacterized protein 45.4 9 0.00031 28.1 1.7 23 4-32 48-70 (145)
151 3bvo_A CO-chaperone protein HS 44.6 10 0.00034 29.6 1.9 28 4-34 11-38 (207)
152 2xzm_9 RPS31E; ribosome, trans 44.2 16 0.00054 28.2 3.0 28 4-33 114-141 (189)
153 2olm_A Nucleoporin-like protei 43.7 7.6 0.00026 28.6 1.0 30 4-33 26-55 (140)
154 2iqj_A Stromal membrane-associ 42.9 7.1 0.00024 28.5 0.8 30 4-33 28-57 (134)
155 2owa_A Arfgap-like finger doma 42.9 8.4 0.00029 28.3 1.2 30 4-33 37-66 (138)
156 3dwd_A ADP-ribosylation factor 42.9 7.4 0.00025 29.0 0.9 30 4-33 39-68 (147)
157 3hcg_A Peptide methionine sulf 42.7 9 0.00031 28.5 1.3 32 19-50 39-72 (146)
158 1qbj_A Protein (double-strande 42.0 31 0.001 22.6 3.8 27 111-137 29-55 (81)
159 1qgp_A Protein (double strande 40.4 37 0.0013 21.8 4.0 27 111-137 33-59 (77)
160 2p57_A GTPase-activating prote 40.0 6.5 0.00022 29.2 0.2 30 4-33 38-67 (144)
161 2l8e_A Polyhomeotic-like prote 39.6 8.8 0.0003 23.1 0.7 21 14-34 9-29 (49)
162 2gnr_A Conserved hypothetical 39.1 14 0.00048 27.1 1.9 23 4-32 48-70 (145)
163 1wi3_A DNA-binding protein SAT 39.1 37 0.0013 22.0 3.7 17 112-128 38-54 (71)
164 1vq8_1 50S ribosomal protein L 38.8 15 0.0005 22.9 1.6 23 4-31 18-40 (57)
165 1mzb_A Ferric uptake regulatio 38.3 10 0.00034 27.0 1.0 12 23-34 91-102 (136)
166 2crr_A Stromal membrane-associ 38.2 8.2 0.00028 28.4 0.5 30 4-33 30-59 (141)
167 1ptq_A Protein kinase C delta 38.0 24 0.00081 20.4 2.5 31 2-35 10-40 (50)
168 1y07_A Desulfoferrodoxin (RBO) 37.2 12 0.00041 27.0 1.2 27 4-35 8-37 (128)
169 3j21_e 50S ribosomal protein L 37.2 15 0.00051 23.3 1.5 24 3-31 17-40 (62)
170 3c5k_A HD6, histone deacetylas 36.5 25 0.00085 24.5 2.8 25 4-36 25-49 (109)
171 2enz_A NPKC-theta, protein kin 36.3 30 0.001 21.4 2.9 34 2-38 22-55 (65)
172 1oyi_A Double-stranded RNA-bin 36.2 43 0.0015 22.2 3.8 27 111-137 32-58 (82)
173 2wb0_X E2A DNA-binding protein 36.1 52 0.0018 27.8 5.1 58 106-174 9-75 (356)
174 2fe3_A Peroxide operon regulat 35.9 12 0.00039 27.1 1.0 12 23-34 93-104 (145)
175 1kbe_A Kinase suppressor of RA 35.9 17 0.00059 21.7 1.6 24 4-34 15-38 (49)
176 2crw_A ARF GAP 3, ADP-ribosyla 35.9 10 0.00035 28.2 0.7 29 4-32 30-58 (149)
177 4ayb_P DNA-directed RNA polyme 34.6 21 0.00073 21.3 1.8 33 1-33 1-33 (48)
178 1wd2_A Ariadne-1 protein homol 34.2 17 0.00057 22.6 1.4 28 4-33 7-36 (60)
179 1rqg_A Methionyl-tRNA syntheta 33.9 22 0.00075 32.7 2.7 23 5-34 142-164 (722)
180 4glx_A DNA ligase; inhibitor, 33.8 22 0.00076 32.1 2.7 35 3-39 405-442 (586)
181 1vd4_A Transcription initiatio 33.6 14 0.00049 22.0 1.0 31 4-34 15-50 (62)
182 2xig_A Ferric uptake regulatio 33.4 13 0.00046 27.0 1.0 13 22-34 98-110 (150)
183 2yw8_A RUN and FYVE domain-con 33.3 27 0.00091 22.8 2.4 29 4-36 20-48 (82)
184 2owo_A DNA ligase; protein-DNA 33.2 27 0.00091 32.1 3.1 35 3-39 405-442 (671)
185 2w57_A Ferric uptake regulatio 33.1 14 0.00047 26.9 1.0 12 23-34 90-101 (150)
186 3eyy_A Putative iron uptake re 32.8 14 0.00049 26.6 1.1 12 23-34 90-101 (145)
187 3sub_A ADP-ribosylation factor 32.4 13 0.00044 28.1 0.8 30 4-33 23-52 (163)
188 2o03_A Probable zinc uptake re 31.9 15 0.00051 26.0 1.0 13 22-34 82-94 (131)
189 3mwm_A ZUR, putative metal upt 31.6 15 0.00051 26.3 1.0 12 23-34 87-98 (139)
190 2ctt_A DNAJ homolog subfamily 31.5 21 0.00073 24.2 1.7 9 4-12 46-54 (104)
191 2jrr_A Uncharacterized protein 31.0 20 0.0007 23.0 1.4 17 18-34 35-51 (67)
192 4ets_A Ferric uptake regulatio 30.3 16 0.00055 27.0 1.0 12 23-34 107-118 (162)
193 2f9y_B Acetyl-coenzyme A carbo 30.3 14 0.00047 30.5 0.6 41 4-48 25-74 (304)
194 2jpc_A SSRB; DNA binding prote 29.6 59 0.002 18.9 3.4 17 112-128 16-32 (61)
195 1twf_J DNA-directed RNA polyme 28.4 16 0.00056 23.7 0.6 13 24-36 5-17 (70)
196 1ufm_A COP9 complex subunit 4; 28.4 65 0.0022 21.1 3.7 27 111-137 32-58 (84)
197 3t7l_A Zinc finger FYVE domain 28.3 33 0.0011 22.9 2.2 29 4-36 21-49 (90)
198 3o47_A ADP-ribosylation factor 27.9 14 0.00048 30.2 0.3 30 4-33 38-67 (329)
199 1z2q_A LM5-1; membrane protein 27.6 39 0.0013 22.1 2.5 28 4-35 22-49 (84)
200 1x4u_A Zinc finger, FYVE domai 27.6 48 0.0017 21.6 2.9 29 4-36 15-43 (84)
201 3lcz_A YCZA, inhibitor of trap 27.5 23 0.0008 21.4 1.2 21 4-30 10-30 (53)
202 1dvp_A HRS, hepatocyte growth 27.5 37 0.0013 26.2 2.7 30 3-36 161-190 (220)
203 1joc_A EEA1, early endosomal a 27.4 34 0.0012 24.3 2.3 28 4-35 70-97 (125)
204 3uej_A NPKC-delta, protein kin 27.2 43 0.0015 20.6 2.5 30 3-35 20-49 (65)
205 2gmg_A Hypothetical protein PF 27.1 24 0.00083 24.7 1.4 10 24-33 68-77 (105)
206 2i5o_A DNA polymerase ETA; zin 26.8 12 0.00042 21.4 -0.2 14 22-35 8-21 (39)
207 2jvm_A Uncharacterized protein 26.2 29 0.00099 23.1 1.5 21 13-33 41-63 (80)
208 2g45_A Ubiquitin carboxyl-term 26.0 43 0.0015 24.0 2.6 21 5-33 36-56 (129)
209 1eh2_A EPS15; calcium binding, 25.6 1.4E+02 0.0048 19.9 5.2 51 111-162 35-89 (106)
210 3e0m_A Peptide methionine sulf 25.5 28 0.00096 29.0 1.7 32 19-50 205-238 (313)
211 1y02_A CARP2, FYVE-ring finger 24.7 32 0.0011 24.5 1.7 29 4-36 20-48 (120)
212 2eli_A Protein kinase C alpha 24.2 51 0.0017 21.6 2.5 35 2-39 27-61 (85)
213 2yuu_A NPKC-delta, protein kin 24.2 46 0.0016 21.6 2.3 34 3-39 28-61 (83)
214 2w0t_A Lethal(3)malignant brai 24.1 32 0.0011 20.1 1.3 15 19-33 2-16 (43)
215 3zyq_A Hepatocyte growth facto 24.1 44 0.0015 26.0 2.6 30 4-37 165-194 (226)
216 4a18_A RPL37, ribosomal protei 24.1 37 0.0013 23.2 1.8 23 4-31 17-39 (94)
217 1m2k_A Silent information regu 23.5 15 0.00053 29.1 -0.2 34 4-41 122-160 (249)
218 1qjt_A EH1, epidermal growth f 23.5 1.3E+02 0.0046 19.5 4.7 49 111-160 32-84 (99)
219 3h99_A Methionyl-tRNA syntheta 23.4 25 0.00086 31.0 1.1 7 5-11 157-163 (560)
220 3lju_X ARF-GAP with dual PH do 22.9 25 0.00085 29.7 0.9 31 4-34 35-65 (386)
221 1wfk_A Zinc finger, FYVE domai 22.9 53 0.0018 21.8 2.4 29 4-36 10-38 (88)
222 3sgi_A DNA ligase; HET: DNA AM 22.8 19 0.00063 32.8 0.1 35 3-39 415-453 (615)
223 2enn_A NPKC-theta, protein kin 22.6 46 0.0016 21.3 2.0 34 3-39 34-67 (77)
224 4cpa_I Metallocarboxypeptidase 22.4 20 0.00068 20.1 0.1 23 6-29 5-27 (38)
225 1y8f_A UNC-13 homolog A, MUNC1 22.3 47 0.0016 20.5 2.0 31 3-36 24-54 (66)
226 1l8d_A DNA double-strand break 21.9 27 0.00093 23.8 0.8 8 4-11 48-55 (112)
227 3ulq_B Transcriptional regulat 21.3 93 0.0032 20.3 3.4 23 111-133 46-71 (90)
228 2bx9_A Anti-trap, AT, tryptoph 21.0 46 0.0016 20.0 1.7 21 4-30 10-30 (53)
229 1n0z_A ZNF265; zinc finger, RN 20.4 34 0.0012 19.9 0.9 15 18-32 9-25 (45)
230 1faq_A RAF-1; transferase, ser 20.1 77 0.0026 18.2 2.6 30 3-39 14-43 (52)
231 3iz5_l 60S ribosomal protein L 20.0 32 0.0011 23.5 0.8 23 4-31 17-39 (94)
No 1
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=100.00 E-value=2.6e-45 Score=315.78 Aligned_cols=164 Identities=30% Similarity=0.489 Sum_probs=143.8
Q ss_pred CCCCCCCCC-CCceeEeCCCCceEeCCCccccccCCccccccccccccCC-CCCCCccccCCCCccccCCCCceEEeCCC
Q 030241 3 DAFCSDCKK-HTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANES-GDNDPVRVGGPTNPLLADGGLSTVIAKPN 80 (181)
Q Consensus 3 ~~~Cp~Cg~-~~~iv~D~~~G~~vC~~CG~Vl~e~~id~~~Ewr~F~~~~-~~~d~sr~G~p~~~~l~~~gl~T~i~~~~ 80 (181)
..+||+||+ ++++++|+.+|++||++||+||+|++||++||||+|++++ ++.|++|+|+|.|+++||.||+|.|++++
T Consensus 21 ~~~Cp~C~~~~~~lv~D~~~G~~vC~~CGlVl~e~~iD~g~EWR~f~~d~~~~~d~sRvG~~~~~~~~~~glsT~I~~~~ 100 (345)
T 4bbr_M 21 VLTCPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFSNDDHNGDDPSRVGEASNPLLDGNNLSTRIGKGE 100 (345)
T ss_dssp -CCCSSCCCSSCCEEEEGGGTEEEETTTCBEEESCCBCHHHHHTTTSCSCSSSCCSSCCEEEECHHHHCSCCCCEEECCS
T ss_pred CCcCCCCCCCCCceeEECCCCcEEeCCCCCCccCcccccCccccCCCcccccCCCcCCCCCCCCccccCCCcceeecCCC
Confidence 457999996 4689999999999999999999999999999999999874 46789999999999999999999999765
Q ss_pred CCCCccccccccccccCC--CCchHHHHHHHHHHHHHHHHhCCchHHHHH--HHHHHHHhh-h----CHHHHHHHHHHHH
Q 030241 81 GASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRIGQMRYIRRW--KIKSLVEAE-I----KTHYWLLACTLLV 151 (181)
Q Consensus 81 ~~~g~~l~~~l~~~q~~~--~~~er~l~~a~~~I~~ia~~L~Lp~~v~e~--~i~k~a~~~-l----~~~~v~AAclYiA 151 (181)
++.+ ..+.+|++||+++ +++||+|.+|+++|++||++|+||++|+|+ .||+++.++ + +.++++|||||+|
T Consensus 101 ~~~~-~~~~~L~r~q~r~~~~~~er~L~~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~a~~~~~~rGrs~e~vaAAclYiA 179 (345)
T 4bbr_M 101 TTDM-RFTKELNKAQGKNVMDKKDNEVQAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIG 179 (345)
T ss_dssp SCCH-HHHHHHHHHHHHTCCCCSSSSTTHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHHH
T ss_pred Ccch-hhHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccCCCHHHHHHHHHHHH
Confidence 3331 1234688999864 789999999999999999999999999999 999999887 4 8999999999999
Q ss_pred HHhCCCCcc--------ccChhhh
Q 030241 152 DKKTSHALL--------RVQPKIL 167 (181)
Q Consensus 152 CR~~~~p~t--------~~~~~~~ 167 (181)
||++++|.| .++++++
T Consensus 180 CR~~~~prtl~eI~~~~~v~~kei 203 (345)
T 4bbr_M 180 CRRAEVARTFKEIQSLIHVKTKEF 203 (345)
T ss_dssp HHHTCCBCCHHHHHHHHTCCTTHH
T ss_pred HHhcCCCccHHHHHHHhCCCHHHH
Confidence 999999986 4666654
No 2
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.5e-42 Score=295.47 Aligned_cols=162 Identities=31% Similarity=0.489 Sum_probs=131.3
Q ss_pred CCCCCCCCCCC-ceeEeCCCCceEeCCCccccccCCccccccccccccCC-CCCCCccccCCCCccccCCCCceEEeCC-
Q 030241 3 DAFCSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANES-GDNDPVRVGGPTNPLLADGGLSTVIAKP- 79 (181)
Q Consensus 3 ~~~Cp~Cg~~~-~iv~D~~~G~~vC~~CG~Vl~e~~id~~~Ewr~F~~~~-~~~d~sr~G~p~~~~l~~~gl~T~i~~~- 79 (181)
.++||+||+.+ ++++|+.+|++||++||+|++|++||++||||+|++++ ++.|++|+|+|.++++||.|++|.|+++
T Consensus 21 ~~~Cp~Cg~~~~~iv~D~~~G~~vC~~CG~Vl~e~~id~~~EwR~F~~~~~~~~~~srvG~~~~~~~~~~~l~T~I~~~~ 100 (345)
T 3k7a_M 21 VLTCPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFSNDDHNGDDPSRVGEASNPLLDGNNLSTRIGKGE 100 (345)
T ss_dssp CCCCSTTCCSCCCCCCCSSSCSCCCSSSCCCCCCCCCCTTCCCCCC--------------CCCCCSSSCCCCCCCCCCTT
T ss_pred CCcCcCCCCCCCceEEECCCCCEecCCCCeEcccccccCCccccccccccccCCCCCccCCCCCccccCCCCceeeccCC
Confidence 46899999832 69999999999999999999999999999999999853 3578999999999999999999999875
Q ss_pred -CCCCCccccccccccccC--CCCchHHHHHHHHHHHHHHHHhCCchHHHHH--HHHHHHHhh--h---CHHHHHHHHHH
Q 030241 80 -NGASGEFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRIGQMRYIRRW--KIKSLVEAE--I---KTHYWLLACTL 149 (181)
Q Consensus 80 -~~~~g~~l~~~l~~~q~~--~~~~er~l~~a~~~I~~ia~~L~Lp~~v~e~--~i~k~a~~~--l---~~~~v~AAclY 149 (181)
+++.| .++|++||++ .+++||+|.+|++.|++|+++|+||+.|+|+ .||+++.++ + +.+.++|||||
T Consensus 101 ~~~~~~---~r~l~~~~~~~~~~~~er~l~~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~~~~~~~~kgr~~~~vaaAcly 177 (345)
T 3k7a_M 101 TTDMRF---TKELNKAQGKNVMDKKDNEVQAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASIL 177 (345)
T ss_dssp SCCHHH---HHHHHHHHHHHTTSSCCTTHHHHHHHHHHHHHHTTCCHHHHTHHHHHHHHHSSSCSSCCCCSHHHHTTTTT
T ss_pred CCCchh---hhhhhhhcccccCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHH
Confidence 23222 1358889875 4889999999999999999999999999999 899999887 4 89999999999
Q ss_pred HHHHhCCCCcc--------ccChhhh
Q 030241 150 LVDKKTSHALL--------RVQPKIL 167 (181)
Q Consensus 150 iACR~~~~p~t--------~~~~~~~ 167 (181)
+|||+++.|.| .++++++
T Consensus 178 iAcR~e~~prtl~ei~~~~~v~~keI 203 (345)
T 3k7a_M 178 IGCRRAEVARTFKEIQSLIHVKTKEF 203 (345)
T ss_dssp TTSBTTBSSCCHHHHHHSSSCCSHHH
T ss_pred HHHHHcCCCccHHHHHHHHCCCHHHH
Confidence 99999999976 5666654
No 3
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=99.83 E-value=1.1e-21 Score=152.12 Aligned_cols=66 Identities=33% Similarity=0.623 Sum_probs=58.5
Q ss_pred CCCCCCCCC-CCceeEeCCCCceEeCCCccccccCCccccccccccccCC-CCCCCccccCCCCcccc
Q 030241 3 DAFCSDCKK-HTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANES-GDNDPVRVGGPTNPLLA 68 (181)
Q Consensus 3 ~~~Cp~Cg~-~~~iv~D~~~G~~vC~~CG~Vl~e~~id~~~Ewr~F~~~~-~~~d~sr~G~p~~~~l~ 68 (181)
..+||+||+ ++++++|+++|++||.+||+||+|++||.+||||+|++++ ++.+++|+|+|.++...
T Consensus 21 ~~~CPECGs~~t~IV~D~erGE~VCsdCGLVLEEriID~GPEWRAFsnDD~~~dDpSRVGAPs~~~~~ 88 (197)
T 3k1f_M 21 VLTCPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFSNXXXXXXXXXXXXXXXXXXXX 88 (197)
T ss_dssp CCCCTTTCCSSCCEEEEGGGTEEEETTTCBBCCCCCBCHHHHHHHHHCCCTTTTCSCCCBCCBCCHHH
T ss_pred CeECcCCCCcCCeEEEeCCCCEEEEcCCCCCcCCceeECCCCCcCcCCcccccccccccccccccccc
Confidence 468999997 2479999999999999999999999999999999999864 36789999999977664
No 4
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=99.79 E-value=6.9e-20 Score=119.20 Aligned_cols=47 Identities=45% Similarity=0.834 Sum_probs=43.8
Q ss_pred CCCCCCCCCCCceeEeCCCCceEeCCCccccccCCccccccccccccC
Q 030241 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANE 50 (181)
Q Consensus 3 ~~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~Vl~e~~id~~~Ewr~F~~~ 50 (181)
.++||+||+ .++++|+++|++||.+||+|++|++||.|||||+|+++
T Consensus 11 ~~~Cp~C~~-~~lv~D~~~ge~vC~~CGlVl~e~~iD~gpEWR~F~~~ 57 (58)
T 1dl6_A 11 RVTCPNHPD-AILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSND 57 (58)
T ss_dssp CCSBTTBSS-SCCEECSSSCCEECTTTCCEECCSCCCCCCSCCCSCCC
T ss_pred cccCcCCCC-CceeEeCCCCeEEeCCCCCEEeccccccCCcccccCCC
Confidence 357999998 67999999999999999999999999999999999865
No 5
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=99.67 E-value=5.2e-17 Score=102.43 Aligned_cols=44 Identities=39% Similarity=0.989 Sum_probs=41.9
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCccccccCCccccccccccc
Q 030241 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFA 48 (181)
Q Consensus 4 ~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~Vl~e~~id~~~Ewr~F~ 48 (181)
..||+||+ .++++|+++|++||..||+|++++.||.+||||+|+
T Consensus 6 ~~CP~C~~-~~l~~d~~~gelvC~~CG~v~~e~~id~~~ewr~f~ 49 (50)
T 1pft_A 6 KVCPACES-AELIYDPERGEIVCAKCGYVIEENIIDMGPEWRAFD 49 (50)
T ss_dssp CSCTTTSC-CCEEEETTTTEEEESSSCCBCCCCCCCCCSSSSCCC
T ss_pred EeCcCCCC-cceEEcCCCCeEECcccCCcccccccccCCcccccC
Confidence 57999997 689999999999999999999999999999999997
No 6
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=99.36 E-value=1e-12 Score=103.89 Aligned_cols=62 Identities=10% Similarity=0.153 Sum_probs=54.4
Q ss_pred CCchHHHHHHHHHHHHHHHHhCCchHHHHH--HHHHHHHhh-h----CHHHHHHHHHHHHHHhCCCCcc
Q 030241 99 SNPDRGLILAFKTIATMSDRIGQMRYIRRW--KIKSLVEAE-I----KTHYWLLACTLLVDKKTSHALL 160 (181)
Q Consensus 99 ~~~er~l~~a~~~I~~ia~~L~Lp~~v~e~--~i~k~a~~~-l----~~~~v~AAclYiACR~~~~p~t 160 (181)
+++||+|.+|++.|.++|++|+||+.++++ .+|+++.++ + +.+.++|||||+|||+++.|.+
T Consensus 3 ~~~er~l~~a~~~I~~~~~~L~L~~~v~~~A~~l~~~~~~~~~~~gr~~~~vaaAclylAcr~~~~p~~ 71 (200)
T 1ais_B 3 DAAERNLAFALSELDRITAQLKLPRHVEEEAARLYREAVRKGLIRGRSIESVMAACVYAACRLLKVPRT 71 (200)
T ss_dssp -----CHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTTTTTTCCHHHHHHHHHHHHHHHHTCCCC
T ss_pred ChHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHHHcCCCCC
Confidence 578999999999999999999999999999 899999887 3 8899999999999999999976
No 7
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=99.21 E-value=3.7e-11 Score=95.39 Aligned_cols=60 Identities=27% Similarity=0.333 Sum_probs=56.2
Q ss_pred chHHHHHHHHHHHHHHHHhCCchHHHHH--HHHHHHHhh--h---CHHHHHHHHHHHHHHhCCCCcc
Q 030241 101 PDRGLILAFKTIATMSDRIGQMRYIRRW--KIKSLVEAE--I---KTHYWLLACTLLVDKKTSHALL 160 (181)
Q Consensus 101 ~er~l~~a~~~I~~ia~~L~Lp~~v~e~--~i~k~a~~~--l---~~~~v~AAclYiACR~~~~p~t 160 (181)
+||+|.+|++.|++++.+|+||+.++++ .+|+++.++ + +.+.++|||||+|||.++.|.+
T Consensus 1 ~er~l~~a~~~I~~~~~~L~L~~~v~~~A~~~~~r~~~~~~~~~~~~~~v~aaclylAcK~ee~p~~ 67 (207)
T 1c9b_A 1 SDRAMMNAFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRT 67 (207)
T ss_dssp CGGGHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTCSTTSCHHHHHHHHHHHHHHHTTCCCC
T ss_pred CchHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHHhcCCCCC
Confidence 4899999999999999999999999999 899999776 4 8999999999999999999976
No 8
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=98.24 E-value=2.2e-06 Score=67.24 Aligned_cols=53 Identities=11% Similarity=0.109 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHhCCchHHHHH--HHHHHHHhh-h----CHHHHHHHHHHHHHHhCCCCcc
Q 030241 108 AFKTIATMSDRIGQMRYIRRW--KIKSLVEAE-I----KTHYWLLACTLLVDKKTSHALL 160 (181)
Q Consensus 108 a~~~I~~ia~~L~Lp~~v~e~--~i~k~a~~~-l----~~~~v~AAclYiACR~~~~p~t 160 (181)
....|.++++.|+||+.+.+. ++++.+.+. + ++..++|||||+|||.++.|+|
T Consensus 108 p~~~i~r~~~~L~l~~~v~~~A~~i~~~~~~~~~~~gr~P~~iAaAaly~A~~~~~~~~t 167 (200)
T 1ais_B 108 PTDYVNKFADELGLSEKVRRRAIEILDEAYKRGLTSGKSPAGLVAAALYIASLLEGEKRT 167 (200)
T ss_dssp GGGGHHHHHHHHTCCHHHHHHHHHHHHHHHHTTCCTTSCHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHhCCCCC
Confidence 456899999999999999888 899999776 3 8999999999999999999976
No 9
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=97.96 E-value=1.9e-05 Score=62.18 Aligned_cols=54 Identities=4% Similarity=-0.044 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHhCCchHHHHH--HHHHHHHhh-h----CHHHHHHHHHHHHHHhCCCCcc
Q 030241 107 LAFKTIATMSDRIGQMRYIRRW--KIKSLVEAE-I----KTHYWLLACTLLVDKKTSHALL 160 (181)
Q Consensus 107 ~a~~~I~~ia~~L~Lp~~v~e~--~i~k~a~~~-l----~~~~v~AAclYiACR~~~~p~t 160 (181)
..++.|.++++.|++|+.+.+. .+++.+.+. + ++..++|||||+|||..+.|.+
T Consensus 101 ~p~~~l~r~~~~l~l~~~~~~~A~~i~~~~~~~~l~~g~~P~~IAaAaiylA~~~~~~~~~ 161 (207)
T 1c9b_A 101 TTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRT 161 (207)
T ss_dssp CTHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTCSTTCCHHHHHHHHHHHHHHTSSSCCC
T ss_pred CHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCccCCCChHHHHHHHHHHHHHHHCCCCC
Confidence 3567899999999999998887 899988766 2 8999999999999999999876
No 10
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=97.95 E-value=3.4e-05 Score=61.96 Aligned_cols=56 Identities=14% Similarity=0.125 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHhCCchHHHHH--HHHHHHHhh--h----CHHHHHHHHHHHHHHhCCCCcc
Q 030241 105 LILAFKTIATMSDRIGQMRYIRRW--KIKSLVEAE--I----KTHYWLLACTLLVDKKTSHALL 160 (181)
Q Consensus 105 l~~a~~~I~~ia~~L~Lp~~v~e~--~i~k~a~~~--l----~~~~v~AAclYiACR~~~~p~t 160 (181)
...+.+.|.+++.+|+||+.+..+ .+|+.+..+ + +...+++||||+|||.++.|.+
T Consensus 28 R~~~~~~i~~v~~~l~L~~~t~~~A~~~~~Rf~~~~~~~~~~~~~lv~~acL~lA~K~Ee~~~~ 91 (235)
T 1zp2_A 28 TIYQWKVVQTFGDRLRLRQRVLATAIVLLRRYMLKKNEEKGFSLEALVATCIYLSCKVEECPVH 91 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCSCCCCCHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHhccccCccc
Confidence 567899999999999999999999 899988665 3 5789999999999999999875
No 11
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=97.64 E-value=0.00016 Score=58.54 Aligned_cols=55 Identities=11% Similarity=-0.098 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHhCCchHHHHH--HHHHHHHhh--h---CHHHHHHHHHHHHHHhCCCCcc
Q 030241 106 ILAFKTIATMSDRIGQMRYIRRW--KIKSLVEAE--I---KTHYWLLACTLLVDKKTSHALL 160 (181)
Q Consensus 106 ~~a~~~I~~ia~~L~Lp~~v~e~--~i~k~a~~~--l---~~~~v~AAclYiACR~~~~p~t 160 (181)
..+.+.|.+++.+|+||..+... .+|+....+ + +...+++||||+|||.+..|.+
T Consensus 42 ~~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL~lA~K~eE~~~~ 103 (258)
T 2i53_A 42 REGARFIFDVGTRLGLHYDTLATGIIYFHRFYMFHSFKQFPRYVTGACCLFLAGKVEETPKK 103 (258)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCChhhcCHHHHHHHHHHHHHcccccccc
Confidence 56889999999999999999988 899988665 4 8889999999999999998864
No 12
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=97.61 E-value=0.00021 Score=59.16 Aligned_cols=59 Identities=12% Similarity=0.116 Sum_probs=50.8
Q ss_pred hHHH-HHHHHHHHHHHHHhCCchHHHHH--HHHHHHHhh--h---CHHHHHHHHHHHHHHhCCCCcc
Q 030241 102 DRGL-ILAFKTIATMSDRIGQMRYIRRW--KIKSLVEAE--I---KTHYWLLACTLLVDKKTSHALL 160 (181)
Q Consensus 102 er~l-~~a~~~I~~ia~~L~Lp~~v~e~--~i~k~a~~~--l---~~~~v~AAclYiACR~~~~p~t 160 (181)
|+.+ ..+.+.|.+++.+|+||..+..+ .+|+..... + +...+++||||+|||.+..|..
T Consensus 39 e~~~R~~~~~~I~~v~~~l~L~~~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~~~~ 105 (285)
T 3rgf_B 39 YWKLQIFFTNVIQALGEHLKLRQQVIATATVYFKRFYARYSLKSIDPVLMAPTCVFLASKVEEFGVV 105 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhCCchhcCHHHHHHHHHHHHHhhhccccc
Confidence 4444 55899999999999999999999 889888665 4 8899999999999999999863
No 13
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=97.61 E-value=0.00015 Score=58.75 Aligned_cols=55 Identities=13% Similarity=-0.000 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHhCCchHHHHH--HHHHHHHhh--h---CHHHHHHHHHHHHHHhCCCCcc
Q 030241 106 ILAFKTIATMSDRIGQMRYIRRW--KIKSLVEAE--I---KTHYWLLACTLLVDKKTSHALL 160 (181)
Q Consensus 106 ~~a~~~I~~ia~~L~Lp~~v~e~--~i~k~a~~~--l---~~~~v~AAclYiACR~~~~p~t 160 (181)
..+.+.|.+++.+|+||..+..+ .+|+..... + +...+++||||+|||.+..|.+
T Consensus 32 ~~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL~lA~K~EE~p~~ 93 (257)
T 2ivx_A 32 QQAANLIQEMGQRLNVSQLTINTAIVYMHRFYMHHSFTKFNKNIISSTALFLAAKVEEQARK 93 (257)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhhCChhhhCHHHHHHHHHHHHhccccCCcC
Confidence 45889999999999999999998 899988665 4 8899999999999999998864
No 14
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=97.59 E-value=0.00021 Score=60.36 Aligned_cols=60 Identities=12% Similarity=0.062 Sum_probs=51.6
Q ss_pred chHHH-HHHHHHHHHHHHHhC--CchHHHHH--HHHHHHHhh--h---CHHHHHHHHHHHHHHhCCCCcc
Q 030241 101 PDRGL-ILAFKTIATMSDRIG--QMRYIRRW--KIKSLVEAE--I---KTHYWLLACTLLVDKKTSHALL 160 (181)
Q Consensus 101 ~er~l-~~a~~~I~~ia~~L~--Lp~~v~e~--~i~k~a~~~--l---~~~~v~AAclYiACR~~~~p~t 160 (181)
.|+.+ ..+.+.|.+++.+|+ ||..+..+ .+|+..... + +...+++||||+||+.+..|.+
T Consensus 52 eE~~lr~~~~~~I~ev~~~l~~~Lp~~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~~~~ 121 (323)
T 1jkw_A 52 EEMTLCKYYEKRLLEFCSVFKPAMPRSVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEFNVS 121 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhCChhhcCHHHHHHHHHHHHHhhhcCCCC
Confidence 35555 446799999999999 99999999 899988665 4 8899999999999999999865
No 15
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=97.42 E-value=0.00023 Score=60.97 Aligned_cols=55 Identities=11% Similarity=-0.051 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHhCCchHHHHH--HHHHHHHhh--h---CHHHHHHHHHHHHHHhCCCCcc
Q 030241 106 ILAFKTIATMSDRIGQMRYIRRW--KIKSLVEAE--I---KTHYWLLACTLLVDKKTSHALL 160 (181)
Q Consensus 106 ~~a~~~I~~ia~~L~Lp~~v~e~--~i~k~a~~~--l---~~~~v~AAclYiACR~~~~p~t 160 (181)
..+.+.|.+++.+|+||..+..+ .+|+..... + +...+++||||+||+.+..|.+
T Consensus 39 ~~~v~wI~ev~~~l~L~~~t~~tAv~~~dRFl~~~sv~~~~~qlva~acLfLA~K~EE~p~~ 100 (358)
T 2pk2_A 39 QQAANLLQDMGQRLNVSQLTINTAIVYMHRFYMIQSFTRFPGNSVAPAALFLAAKVEEQPKK 100 (358)
T ss_dssp HHHHHHHHHHHTTTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHhhccCCCC
Confidence 55889999999999999999998 889888665 4 8899999999999999999864
No 16
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=97.19 E-value=5.4e-05 Score=64.65 Aligned_cols=54 Identities=6% Similarity=-0.101 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhCCchHHHHH--HHHHHHHhh-h----CHHHHHHHHHHHHHHhCCCCcc
Q 030241 107 LAFKTIATMSDRIGQMRYIRRW--KIKSLVEAE-I----KTHYWLLACTLLVDKKTSHALL 160 (181)
Q Consensus 107 ~a~~~I~~ia~~L~Lp~~v~e~--~i~k~a~~~-l----~~~~v~AAclYiACR~~~~p~t 160 (181)
..-..|.++|++|+|+..+... +|.+.+.+. + ++..++|||||+||+.++.++|
T Consensus 234 ~p~~~i~Rf~s~L~l~~~v~~~A~~i~~~~~~~~i~~GR~P~~IAAAaIylAa~l~g~~~t 294 (345)
T 4bbr_M 234 QNLTYIPRFCSHLGLPMQVTTSAEYTAKKCKEIKEIAGKSPITIAVVSIYLNILLFQIPIT 294 (345)
T ss_dssp -------------------------------------------------------------
T ss_pred CHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcccccCCChHHHHHHHHHHHHHHhCCCCC
Confidence 4556789999999999988777 888888766 4 8899999999999999998876
No 17
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=96.89 E-value=0.00034 Score=45.67 Aligned_cols=30 Identities=33% Similarity=0.801 Sum_probs=27.9
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCccccc
Q 030241 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLE 34 (181)
Q Consensus 4 ~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~Vl~ 34 (181)
.+||.|+. ..+||++++-.+.|..||.+|-
T Consensus 8 VKCp~C~n-iq~VFShA~tvV~C~~Cg~~L~ 37 (66)
T 1qxf_A 8 VKCPDCEH-EQVIFDHPSTIVKCIICGRTVA 37 (66)
T ss_dssp EECTTTCC-EEEEESSCSSCEECSSSCCEEE
T ss_pred EECCCCCC-ceEEEecCceEEEcccCCCEEe
Confidence 67999997 6899999999999999999995
No 18
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=96.83 E-value=0.00018 Score=61.26 Aligned_cols=52 Identities=6% Similarity=-0.093 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhCCchHHHHH--HHHHHHHhh-h----CHHHHHHHHHHHHHHhCCCCcc
Q 030241 109 FKTIATMSDRIGQMRYIRRW--KIKSLVEAE-I----KTHYWLLACTLLVDKKTSHALL 160 (181)
Q Consensus 109 ~~~I~~ia~~L~Lp~~v~e~--~i~k~a~~~-l----~~~~v~AAclYiACR~~~~p~t 160 (181)
...|.++|+.|+|+..+... +|.+.+.+. + ++..++|||||+||+.++.++|
T Consensus 236 ~~~i~Rf~~~L~l~~~v~~~A~~i~~~~~~~~l~~Gr~P~~IAaAaIylAa~~~~~~~t 294 (345)
T 3k7a_M 236 LTYIPRFCSHLGLPMQVTTSAEYTAKKCKEIKEIAGKSPITIAVVSIYLNILLFQIPIT 294 (345)
T ss_dssp -----------------------------------------------------------
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhchhcCCCHHHHHHHHHHHHHHHHCCCCC
Confidence 44566889999999887776 788777655 3 8899999999999999998865
No 19
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=96.80 E-value=0.001 Score=44.06 Aligned_cols=31 Identities=23% Similarity=0.501 Sum_probs=26.6
Q ss_pred CCCCCCCCCCCCceeEeCCCCceEeCCCccccc
Q 030241 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLE 34 (181)
Q Consensus 2 ~~~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~Vl~ 34 (181)
+...||.|++ .+.++..+|.++|.+||.+..
T Consensus 7 ~iL~CP~ck~--~L~~~~~~~~LiC~~cg~~YP 37 (70)
T 2js4_A 7 DILVCPVCKG--RLEFQRAQAELVCNADRLAFP 37 (70)
T ss_dssp CCCBCTTTCC--BEEEETTTTEEEETTTTEEEE
T ss_pred hheECCCCCC--cCEEeCCCCEEEcCCCCceec
Confidence 3467999996 688999999999999999863
No 20
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=96.79 E-value=0.00045 Score=44.76 Aligned_cols=31 Identities=35% Similarity=0.754 Sum_probs=28.2
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCcccccc
Q 030241 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLES 35 (181)
Q Consensus 4 ~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~Vl~e 35 (181)
.+||.|+. ..+||++++-.+.|..||.+|-+
T Consensus 16 VkCp~C~~-~q~VFSha~t~V~C~~Cgt~L~~ 46 (63)
T 3j20_W 16 VKCIDCGN-EQIVFSHPATKVRCLICGATLVE 46 (63)
T ss_dssp EECSSSCC-EEEEESSCSSCEECSSSCCEEEE
T ss_pred EECCCCCC-eeEEEecCCeEEEccCcCCEEec
Confidence 57999997 68999999999999999999953
No 21
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=96.70 E-value=0.0012 Score=43.48 Aligned_cols=31 Identities=10% Similarity=0.165 Sum_probs=26.4
Q ss_pred CCCCCCCCCCCCceeEeCCCCceEeCCCccccc
Q 030241 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLE 34 (181)
Q Consensus 2 ~~~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~Vl~ 34 (181)
+...||.|++ .+.++...|.++|.+||.+..
T Consensus 7 ~iL~CP~ck~--~L~~~~~~~~LiC~~cg~~YP 37 (68)
T 2jr6_A 7 DILVCPVTKG--RLEYHQDKQELWSRQAKLAYP 37 (68)
T ss_dssp CCCBCSSSCC--BCEEETTTTEEEETTTTEEEE
T ss_pred hheECCCCCC--cCeEeCCCCEEEcCCCCcEec
Confidence 3467999996 688898999999999999863
No 22
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=96.67 E-value=0.0014 Score=43.12 Aligned_cols=29 Identities=17% Similarity=0.080 Sum_probs=25.6
Q ss_pred CCCCCCCCCCCceeEeCCCCceEeCCCcccc
Q 030241 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVL 33 (181)
Q Consensus 3 ~~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~Vl 33 (181)
...||.|++ .+.+|..+|.++|.+||...
T Consensus 10 iL~CP~ck~--~L~~~~~~g~LvC~~c~~~Y 38 (67)
T 2jny_A 10 VLACPKDKG--PLRYLESEQLLVNERLNLAY 38 (67)
T ss_dssp CCBCTTTCC--BCEEETTTTEEEETTTTEEE
T ss_pred HhCCCCCCC--cCeEeCCCCEEEcCCCCccc
Confidence 457999996 68899999999999999886
No 23
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=96.54 E-value=0.00092 Score=45.77 Aligned_cols=31 Identities=23% Similarity=0.471 Sum_probs=26.8
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCccccccC
Q 030241 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLESH 36 (181)
Q Consensus 4 ~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~Vl~e~ 36 (181)
..||.||. +.++++..|...|..||.++.-.
T Consensus 28 y~Cp~CG~--~~v~r~atGiW~C~~Cg~~~agg 58 (83)
T 1vq8_Z 28 HACPNCGE--DRVDRQGTGIWQCSYCDYKFTGG 58 (83)
T ss_dssp EECSSSCC--EEEEEEETTEEEETTTCCEEECC
T ss_pred CcCCCCCC--cceeccCCCeEECCCCCCEecCC
Confidence 46999996 58999999999999999987533
No 24
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=96.54 E-value=0.00077 Score=45.73 Aligned_cols=31 Identities=19% Similarity=0.755 Sum_probs=28.2
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCcccccc
Q 030241 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLES 35 (181)
Q Consensus 4 ~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~Vl~e 35 (181)
.+||.|+. ..+||++++-.+.|..||.||-+
T Consensus 33 VkCp~C~n-~q~VFShA~t~V~C~~Cg~~L~~ 63 (81)
T 2xzm_6 33 VKCAQCQN-IQMIFSNAQSTIICEKCSAILCK 63 (81)
T ss_dssp EECSSSCC-EEEEETTCSSCEECSSSCCEEEE
T ss_pred eECCCCCC-eeEEEecCccEEEccCCCCEEee
Confidence 57999997 68999999999999999999953
No 25
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=96.53 E-value=0.0013 Score=43.50 Aligned_cols=30 Identities=17% Similarity=0.327 Sum_probs=25.7
Q ss_pred CCCCCCCCCCCceeEeCCCCceEeCCCccccc
Q 030241 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLE 34 (181)
Q Consensus 3 ~~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~Vl~ 34 (181)
...||.|++ .+.++..+|.++|.+||.+..
T Consensus 8 iL~CP~ck~--~L~~~~~~~~LiC~~cg~~YP 37 (69)
T 2pk7_A 8 ILACPICKG--PLKLSADKTELISKGAGLAYP 37 (69)
T ss_dssp TCCCTTTCC--CCEECTTSSEEEETTTTEEEE
T ss_pred heeCCCCCC--cCeEeCCCCEEEcCCCCcEec
Confidence 457999996 588888999999999999863
No 26
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=96.49 E-value=0.0011 Score=43.69 Aligned_cols=29 Identities=31% Similarity=0.644 Sum_probs=25.4
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCccccc
Q 030241 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLE 34 (181)
Q Consensus 4 ~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~Vl~ 34 (181)
..||.|++ .+.++..+|.++|.+||.+..
T Consensus 9 L~CP~ck~--~L~~~~~~~~LiC~~cg~~YP 37 (68)
T 2hf1_A 9 LVCPLCKG--PLVFDKSKDELICKGDRLAFP 37 (68)
T ss_dssp CBCTTTCC--BCEEETTTTEEEETTTTEEEE
T ss_pred eECCCCCC--cCeEeCCCCEEEcCCCCcEec
Confidence 57999996 688898999999999999863
No 27
>3u5c_b RP61, YS20, 40S ribosomal protein S27-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_X 3u5g_b
Probab=96.48 E-value=0.00089 Score=45.47 Aligned_cols=31 Identities=26% Similarity=0.675 Sum_probs=28.3
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCcccccc
Q 030241 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLES 35 (181)
Q Consensus 4 ~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~Vl~e 35 (181)
.+||.|+. ..+||++++-.+.|..||.||-+
T Consensus 35 VkCp~C~~-~q~VFSha~t~V~C~~Cg~~L~~ 65 (82)
T 3u5c_b 35 VKCPGCLN-ITTVFSHAQTAVTCESCSTILCT 65 (82)
T ss_dssp EECTTSCS-CEEEESBCSSCCCCSSSCCCCEE
T ss_pred EECCCCCC-eeEEEecCCeEEEccccCCEEec
Confidence 57999998 78999999999999999999953
No 28
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=96.17 E-value=0.0014 Score=44.90 Aligned_cols=31 Identities=35% Similarity=0.646 Sum_probs=28.3
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCcccccc
Q 030241 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLES 35 (181)
Q Consensus 4 ~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~Vl~e 35 (181)
.+||.|+. ..+||.+++-.+.|..||.||-+
T Consensus 37 VkCp~C~~-~~~VFShA~t~V~C~~CgtvL~~ 67 (86)
T 3iz6_X 37 VKCQGCFN-ITTVFSHSQTVVVCPGCQTVLCQ 67 (86)
T ss_dssp EECTTTCC-EEEEETTCSSCCCCSSSCCCCSC
T ss_pred EECCCCCC-eeEEEecCCcEEEccCCCCEeec
Confidence 57999998 68999999999999999999953
No 29
>3m03_A ORC6, origin recognition complex subunit 6; helix turn helix, DNA binding protein, origin recognition CO DNA replication; HET: MES; 2.50A {Homo sapiens}
Probab=96.10 E-value=0.016 Score=40.58 Aligned_cols=50 Identities=10% Similarity=-0.029 Sum_probs=38.3
Q ss_pred HHHHHHHHhCCchHHHHH----HHHHHHH---hh----hCHHHHHHHHHHHHHHhCCCCcc
Q 030241 111 TIATMSDRIGQMRYIRRW----KIKSLVE---AE----IKTHYWLLACTLLVDKKTSHALL 160 (181)
Q Consensus 111 ~I~~ia~~L~Lp~~v~e~----~i~k~a~---~~----l~~~~v~AAclYiACR~~~~p~t 160 (181)
.|+++|=+||+++-+... ..|+... ++ |+.-.++||++|.|||.++..+.
T Consensus 5 ~v~dLcVqfgc~e~~~~a~~lL~~Yk~~l~~~~~~~~D~s~P~f~aaA~~~acr~~K~kVd 65 (95)
T 3m03_A 5 GIRDLAVQFSCIEAVNMASKILKSYESSLPQTQQVDLDLSRPLFTSAALLSACKILKLKVD 65 (95)
T ss_dssp CHHHHHHHHTCGGGHHHHHHHHHHHHTTSCHHHHHHCCTTSHHHHHHHHHHHHHHTTCCCC
T ss_pred CHHHHHHHhCCHHHHHHHHHHHHHHHHHhHHHhhccccccccHHHHHHHHHHHHHHccCCC
Confidence 478999999999865433 5666532 12 37889999999999999998764
No 30
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=95.98 E-value=0.022 Score=46.43 Aligned_cols=52 Identities=4% Similarity=-0.001 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHhCCchHHHHH--HHHHHHHhh--h---CHHHHHHHHHHHHHHhCCC
Q 030241 106 ILAFKTIATMSDRIGQMRYIRRW--KIKSLVEAE--I---KTHYWLLACTLLVDKKTSH 157 (181)
Q Consensus 106 ~~a~~~I~~ia~~L~Lp~~v~e~--~i~k~a~~~--l---~~~~v~AAclYiACR~~~~ 157 (181)
....+.|.+++..++|+..+... .++...... + +...+++||||+|||.+..
T Consensus 39 ~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfl~~~~v~~~~lqlv~~acL~iA~K~eE~ 97 (269)
T 2b9r_A 39 AILIDWLVQVQMKFRLLQETMYMTVSIIDRFMQNNSVPKKMLQLVGVTAMFIASKYEEM 97 (269)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTSCCCGGGHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCcHHHhhHHHHHHHHHHHhcccc
Confidence 44778899999999999888777 788887666 4 7889999999999999876
No 31
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=95.71 E-value=0.03 Score=45.26 Aligned_cols=54 Identities=9% Similarity=-0.025 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHhCCchHHHHH--HHHHHHHhh--h---CHHHHHHHHHHHHHHhCCC-Cc
Q 030241 106 ILAFKTIATMSDRIGQMRYIRRW--KIKSLVEAE--I---KTHYWLLACTLLVDKKTSH-AL 159 (181)
Q Consensus 106 ~~a~~~I~~ia~~L~Lp~~v~e~--~i~k~a~~~--l---~~~~v~AAclYiACR~~~~-p~ 159 (181)
..+.+.|-+++..++|+..+.-. .++...... + +...+++||||+|||.+.. |.
T Consensus 40 ~~lvdwl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~~~~lqlv~~acl~iA~K~ee~~~~ 101 (260)
T 2cch_B 40 AILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPP 101 (260)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCSSCC
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccCCCCHHHHhHHHHHHHHHHHHhcccCCC
Confidence 45788999999999999988777 677776555 4 7789999999999999987 53
No 32
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=95.54 E-value=0.0093 Score=36.80 Aligned_cols=28 Identities=29% Similarity=0.719 Sum_probs=21.7
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCcccc
Q 030241 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVL 33 (181)
Q Consensus 4 ~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~Vl 33 (181)
..||.||+ ..+..++ ..-..|..||.+.
T Consensus 20 k~CP~CG~-~~fm~~~-~~R~~C~kCG~t~ 47 (50)
T 3j20_Y 20 KFCPRCGP-GVFMADH-GDRWACGKCGYTE 47 (50)
T ss_dssp EECSSSCS-SCEEEEC-SSEEECSSSCCEE
T ss_pred ccCCCCCC-ceEEecC-CCeEECCCCCCEE
Confidence 56999997 5555554 5789999999874
No 33
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=95.38 E-value=0.046 Score=44.43 Aligned_cols=55 Identities=5% Similarity=0.013 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHhCCchHHHHH--HHHHHHHhh--h---CHHHHHHHHHHHHHHhCCC-Ccc
Q 030241 106 ILAFKTIATMSDRIGQMRYIRRW--KIKSLVEAE--I---KTHYWLLACTLLVDKKTSH-ALL 160 (181)
Q Consensus 106 ~~a~~~I~~ia~~L~Lp~~v~e~--~i~k~a~~~--l---~~~~v~AAclYiACR~~~~-p~t 160 (181)
..+.+.|.+++..++++..+.-. .++...... + +...+++||||+|||.+.. |.+
T Consensus 58 ~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~~~~lqlv~~acL~iAsK~EE~~p~~ 120 (271)
T 2w96_A 58 KIVATWMLEVCEEQKCEEEVFPLAMNYLDRFLSLEPVKKSRLQLLGATCMFVASKMKETIPLT 120 (271)
T ss_dssp HHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHTTSCCCTTTHHHHHHHHHHHHHHHHCSSCCC
T ss_pred HHHHHHHHHHHHHHCCchhHHHHHHHHHHHhCCcCCcCHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 45778899999999999877666 677776655 3 8899999999999999987 754
No 34
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=95.08 E-value=0.044 Score=40.33 Aligned_cols=28 Identities=25% Similarity=0.438 Sum_probs=20.8
Q ss_pred CCCCCCCCCCCceeEeCCCCceEeCCCcccc
Q 030241 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVL 33 (181)
Q Consensus 3 ~~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~Vl 33 (181)
.-.||.|++ .....| ...+||.+||.--
T Consensus 27 lP~CP~C~s-eytYeD--g~l~vCPeC~hEW 54 (138)
T 2akl_A 27 LPPCPQCNS-EYTYED--GALLVCPECAHEW 54 (138)
T ss_dssp SCCCTTTCC-CCCEEC--SSSEEETTTTEEE
T ss_pred CCCCCCCCC-cceEec--CCeEECCcccccc
Confidence 457999998 444444 5679999999754
No 35
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=94.43 E-value=0.05 Score=43.22 Aligned_cols=53 Identities=9% Similarity=0.011 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHhCCchHHHHH--HHHHHHHhh---h--CHHHHHHHHHHHHHHhCCCCcc
Q 030241 108 AFKTIATMSDRIGQMRYIRRW--KIKSLVEAE---I--KTHYWLLACTLLVDKKTSHALL 160 (181)
Q Consensus 108 a~~~I~~ia~~L~Lp~~v~e~--~i~k~a~~~---l--~~~~v~AAclYiACR~~~~p~t 160 (181)
.++.|.+++..++++..+... .+...+... + ++..+||||||+|++..+.+++
T Consensus 134 P~~~l~~~~~~~~~~~~~~~~A~~~l~~s~~~~~~l~~~Ps~IAaAai~lA~~~~~~~~~ 193 (235)
T 1zp2_A 134 PYTSLEQAFHDGIINQKQLEFAWSIVNDSYASSLCLMAHPHQLAYAALLISCCNDENTIP 193 (235)
T ss_dssp THHHHHHHHHTTSSCHHHHHHHHHHHHHHTTTTGGGTSCHHHHHHHHHHHHHTSCTTHHH
T ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCchhccCHHHHHHHHHHHHHHhcCCCCC
Confidence 456788888889998877666 555555333 2 8999999999999999887643
No 36
>4ell_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor, cell cycle; 1.98A {Homo sapiens}
Probab=94.40 E-value=0.14 Score=44.61 Aligned_cols=55 Identities=11% Similarity=0.102 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHhCCch-HHHHH--HHHHHHHhh---h----CHHHHHHHHHHHHHHhCCCCcc
Q 030241 106 ILAFKTIATMSDRIGQMR-YIRRW--KIKSLVEAE---I----KTHYWLLACTLLVDKKTSHALL 160 (181)
Q Consensus 106 ~~a~~~I~~ia~~L~Lp~-~v~e~--~i~k~a~~~---l----~~~~v~AAclYiACR~~~~p~t 160 (181)
.-|..+|+.+|++|+++. .+.+. .+|+..... | ..+.++-+|+|+.||..+..+|
T Consensus 280 ~LAa~Rl~~LC~~L~~~~~~l~~~IWt~fe~~l~~~teLm~dRHLDQiiLCsiY~i~Kv~~~~~t 344 (411)
T 4ell_A 280 RLAYLRLNTLCERLLSEHPELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYGICKVKNIDLK 344 (411)
T ss_dssp HHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHTTTCCCC
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhhhHhhccccHHHHHHHHHHHHHhhccCCCC
Confidence 458999999999999876 66666 777776544 3 7899999999999999988766
No 37
>3h4c_A Transcription factor TFIIB-like; cyclin, transcription factor TFIIB repeat; 2.30A {Trypanosoma brucei brucei}
Probab=94.36 E-value=0.19 Score=40.00 Aligned_cols=53 Identities=6% Similarity=0.114 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHhCCchHHHHH--HHHHHHHhh-------h-CHHHHHHHHHHHHHHhCCCCcc
Q 030241 108 AFKTIATMSDRIGQMRYIRRW--KIKSLVEAE-------I-KTHYWLLACTLLVDKKTSHALL 160 (181)
Q Consensus 108 a~~~I~~ia~~L~Lp~~v~e~--~i~k~a~~~-------l-~~~~v~AAclYiACR~~~~p~t 160 (181)
+...|..+-.+-.+|+.|.++ ++-|..... + +...|+|||+.+|..+.+.||.
T Consensus 15 M~nclr~L~kKs~~~eaVL~~AieLar~fvg~rR~rgqRvE~q~dVAAAc~miAae~~~~Pip 77 (260)
T 3h4c_A 15 MLNCMRGLHKKAVLPEPVLDRGIELARAFVGGRRARGQRVERQPDVAAACLMIAAEEAQQPLP 77 (260)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHhhccCcHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHHHHHHHcCCCcc
Confidence 566788899999999999888 777776443 2 8899999999999999999985
No 38
>2r7g_A PP110, retinoblastoma-associated protein, P105-RB, RB; retinoblastoma protein, E2F displacement, transcription repressor; 1.67A {Homo sapiens} SCOP: a.74.1.3 a.74.1.3 PDB: 1n4m_A 3pom_A 1gh6_B 1gux_A 1o9k_A 1ad6_A 1gux_B 1o9k_B
Probab=94.16 E-value=0.18 Score=43.00 Aligned_cols=58 Identities=10% Similarity=0.093 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHhCCch-HHHHH--HHHHHHHhh---h----CHHHHHHHHHHHHHHhCCCCcc
Q 030241 103 RGLILAFKTIATMSDRIGQMR-YIRRW--KIKSLVEAE---I----KTHYWLLACTLLVDKKTSHALL 160 (181)
Q Consensus 103 r~l~~a~~~I~~ia~~L~Lp~-~v~e~--~i~k~a~~~---l----~~~~v~AAclYiACR~~~~p~t 160 (181)
|-+.-|..+|..+|++|+++. .+.+. .+|..+... | ..+.++-+|+|+.||.++..+|
T Consensus 213 Kvy~La~~Rl~~LC~~L~~~~~~~~~~iWt~fe~~l~~~t~L~~dRHLDQiilCaiY~i~Kv~~~~~t 280 (347)
T 2r7g_A 213 KVYRLAYLRLNTLCERLLSEHPELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYGICKVKNIDLK 280 (347)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhChHhhcCCcHHHHHHHHHHHHHHhcCCCCC
Confidence 344558899999999999876 46665 777776443 3 7899999999999999998766
No 39
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=93.99 E-value=0.049 Score=34.27 Aligned_cols=27 Identities=22% Similarity=0.673 Sum_probs=22.0
Q ss_pred CCCCCCCCCCCceeEeCCCCceEeC--CCcccc
Q 030241 3 DAFCSDCKKHTEVVFDHSAGDTVCS--ECGLVL 33 (181)
Q Consensus 3 ~~~Cp~Cg~~~~iv~D~~~G~~vC~--~CG~Vl 33 (181)
...||.|++ .+..+. |+++|. +||...
T Consensus 10 iL~CP~c~~--~L~~~~--~~L~C~~~~c~~~Y 38 (56)
T 2kpi_A 10 ILACPACHA--PLEERD--AELICTGQDCGLAY 38 (56)
T ss_dssp SCCCSSSCS--CEEEET--TEEEECSSSCCCEE
T ss_pred heeCCCCCC--cceecC--CEEEcCCcCCCcEE
Confidence 357999997 466664 999999 999886
No 40
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=93.91 E-value=0.14 Score=42.46 Aligned_cols=54 Identities=7% Similarity=-0.060 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHhCCchHHHHH--HHHHHHHhh--h---CHHHHHHHHHHHHHHhCC-CC
Q 030241 105 LILAFKTIATMSDRIGQMRYIRRW--KIKSLVEAE--I---KTHYWLLACTLLVDKKTS-HA 158 (181)
Q Consensus 105 l~~a~~~I~~ia~~L~Lp~~v~e~--~i~k~a~~~--l---~~~~v~AAclYiACR~~~-~p 158 (181)
-..+.+.|-+++..++|+..+.-. .++.....+ + +...+++||+|+||+.+. .|
T Consensus 71 R~~lvdwl~ev~~~~~l~~~t~~lAv~~lDRfls~~~v~~~~lqLv~~tcL~lAsK~eE~~p 132 (306)
T 3g33_B 71 RKMLAYWMLEVCEEQRCEEEVFPLAMNYLDRYLSCVPTRKAQLQLLGAVCMLLASKLRETTP 132 (306)
T ss_dssp HHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHCCCCGGGHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHHHHHhCCcHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccCCC
Confidence 356888999999999999988777 777776555 3 788999999999999854 44
No 41
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=93.65 E-value=0.16 Score=40.77 Aligned_cols=54 Identities=11% Similarity=-0.002 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHhCCchHHHHH--HHHHHHHhh--h---CHHHHHHHHHHHHHHhCCC-Cc
Q 030241 106 ILAFKTIATMSDRIGQMRYIRRW--KIKSLVEAE--I---KTHYWLLACTLLVDKKTSH-AL 159 (181)
Q Consensus 106 ~~a~~~I~~ia~~L~Lp~~v~e~--~i~k~a~~~--l---~~~~v~AAclYiACR~~~~-p~ 159 (181)
....+.|-+++..++|+..+.-. .++...... + +...+++||+|+||+.+.. |.
T Consensus 52 ~~lvdwl~ev~~~~~l~~etl~lAv~~~DRfls~~~v~~~~lqLv~~acl~iA~K~eE~~~p 113 (257)
T 1g3n_C 52 KLLGTWMFSVCQEYNLEPNVVALALNLLDRLLLIKQVSKEHFQKTGSACLLVASKLRSLTPI 113 (257)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHCSSCC
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHccccCC
Confidence 45788999999999999887766 777777555 3 7789999999999997654 54
No 42
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=93.37 E-value=0.22 Score=39.90 Aligned_cols=53 Identities=8% Similarity=0.051 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHhCCchHHHHH--HHHHHHH-hh---h--CHHHHHHHHHHHHHHhCCCCcc
Q 030241 108 AFKTIATMSDRIGQMRYIRRW--KIKSLVE-AE---I--KTHYWLLACTLLVDKKTSHALL 160 (181)
Q Consensus 108 a~~~I~~ia~~L~Lp~~v~e~--~i~k~a~-~~---l--~~~~v~AAclYiACR~~~~p~t 160 (181)
.++.|.+++..+++++.+... .+...+. .. + +...+||||||+|++..+.+++
T Consensus 146 P~~fl~~~~~~l~~~~~~~~~A~~~~~~sl~~~~~~l~~~Ps~IAaAai~lA~~~~~~~~p 206 (257)
T 2ivx_A 146 PHTDVVKCTQLVRASKDLAQTSYFMATNSLHLTTFCLQYKPTVIACVCIHLACKWSNWEIP 206 (257)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCGGGTSCHHHHHHHHHHHHHHHHTCCCC
T ss_pred cHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhcccHHHcCCHHHHHHHHHHHHHHHhCCCCC
Confidence 456788889999998887666 4555544 22 2 8999999999999999886654
No 43
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=93.21 E-value=0.045 Score=34.32 Aligned_cols=28 Identities=25% Similarity=0.651 Sum_probs=21.0
Q ss_pred CCCCCCCCCCCceeEeCCCCceEeCCCccc
Q 030241 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLV 32 (181)
Q Consensus 3 ~~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~V 32 (181)
...||.||+ ..++. ...+...|..||+.
T Consensus 18 ~~fCPkCG~-~~~ma-~~~dr~~C~kCgyt 45 (55)
T 2k4x_A 18 HRFCPRCGP-GVFLA-EHADRYSCGRCGYT 45 (55)
T ss_dssp SCCCTTTTT-TCCCE-ECSSEEECTTTCCC
T ss_pred cccCcCCCC-ceeEe-ccCCEEECCCCCCE
Confidence 467999997 44433 34578999999998
No 44
>4elj_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor protein, phosphorylation, cell; HET: TPO; 2.70A {Homo sapiens}
Probab=92.91 E-value=0.38 Score=44.20 Aligned_cols=57 Identities=11% Similarity=0.079 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHhCCch-HHHHH--HHHHHHHhh---h----CHHHHHHHHHHHHHHhCCCCcc
Q 030241 104 GLILAFKTIATMSDRIGQMR-YIRRW--KIKSLVEAE---I----KTHYWLLACTLLVDKKTSHALL 160 (181)
Q Consensus 104 ~l~~a~~~I~~ia~~L~Lp~-~v~e~--~i~k~a~~~---l----~~~~v~AAclYiACR~~~~p~t 160 (181)
-+.-|..+|..+|++|+++. .+.+. .+|+.+... | ..++++-+|+|+.||.++..++
T Consensus 523 vy~LAa~Rl~~LC~~L~~~~~~i~~~IWt~fe~~l~~~t~L~~dRHLDQiilCsiY~icKv~~~~lt 589 (656)
T 4elj_A 523 VYRLAYLRLNTLCERLLSEHPELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYGICKVKNIDLK 589 (656)
T ss_dssp HHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHCGGGSTTSCHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhHHHHhcchHHHHHHHHHHHHHHhccCCcC
Confidence 34559999999999999875 56666 677766443 3 8899999999999999997765
No 45
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=92.87 E-value=0.36 Score=39.43 Aligned_cols=52 Identities=6% Similarity=-0.049 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHhCCchHHHHH--HHHHHHHhh---h---CHHHHHHHHHHHHHHhCCC
Q 030241 106 ILAFKTIATMSDRIGQMRYIRRW--KIKSLVEAE---I---KTHYWLLACTLLVDKKTSH 157 (181)
Q Consensus 106 ~~a~~~I~~ia~~L~Lp~~v~e~--~i~k~a~~~---l---~~~~v~AAclYiACR~~~~ 157 (181)
....+.|.+++..++|+....-. .++...... + +...+++||||+|||.+..
T Consensus 51 ~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~~v~~~~lqlv~~acL~iA~K~eE~ 110 (283)
T 1w98_B 51 AILLDWLMEVCEVYKLHRETFYLAQDFFDRYMATQENVVKTLLQLIGISSLFIAAKLEEI 110 (283)
T ss_dssp HHHHHHHHHHHHHTTCBHHHHHHHHHHHHHHHHHCCCCCGGGHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhccc
Confidence 45677899999999999887666 666665432 3 7889999999999999876
No 46
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=92.71 E-value=0.24 Score=40.52 Aligned_cols=52 Identities=12% Similarity=0.158 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHhCCchHHHHH--HHHHHHHhh---h--CHHHHHHHHHHHHHHhCCCCc
Q 030241 108 AFKTIATMSDRIGQMRYIRRW--KIKSLVEAE---I--KTHYWLLACTLLVDKKTSHAL 159 (181)
Q Consensus 108 a~~~I~~ia~~L~Lp~~v~e~--~i~k~a~~~---l--~~~~v~AAclYiACR~~~~p~ 159 (181)
.++.|.+++..|+++..+... .+...+... + ....+||||||+|++..+.+.
T Consensus 157 P~~fL~~~~~~l~~~~~~~~~A~~~l~~sl~t~~~l~~~Ps~IAaAaiylA~~~~~~~~ 215 (285)
T 3rgf_B 157 PYRPLLQYVQDMGQEDMLLPLAWRIVNDTYRTDLCLLYPPFMIALACLHVACVVQQKDA 215 (285)
T ss_dssp SHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSHHHHSCHHHHHHHHHHHHHHHTTCCC
T ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccChhhccCHHHHHHHHHHHHHHHcCCCh
Confidence 356788888889887776655 454444322 2 899999999999999988754
No 47
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=92.39 E-value=0.051 Score=31.09 Aligned_cols=28 Identities=25% Similarity=0.679 Sum_probs=19.5
Q ss_pred CCCCCCCC-CceeEeCCCCceEeCCCccc
Q 030241 5 FCSDCKKH-TEVVFDHSAGDTVCSECGLV 32 (181)
Q Consensus 5 ~Cp~Cg~~-~~iv~D~~~G~~vC~~CG~V 32 (181)
.||.||++ +.++.+...=.+-|..||..
T Consensus 2 lC~~C~~peT~l~~~~~~~~l~C~aCG~~ 30 (36)
T 1k81_A 2 ICRECGKPDTKIIKEGRVHLLKCMACGAI 30 (36)
T ss_dssp CCSSSCSCEEEEEEETTEEEEEEETTTEE
T ss_pred CCcCCCCCCcEEEEeCCcEEEEhhcCCCc
Confidence 69999984 33555444455669999976
No 48
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=92.34 E-value=0.24 Score=39.52 Aligned_cols=53 Identities=4% Similarity=0.080 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHhCCchH----HHHH--HHHHHHHhh---h--CHHHHHHHHHHHHHHhCCCCcc
Q 030241 108 AFKTIATMSDRIGQMRY----IRRW--KIKSLVEAE---I--KTHYWLLACTLLVDKKTSHALL 160 (181)
Q Consensus 108 a~~~I~~ia~~L~Lp~~----v~e~--~i~k~a~~~---l--~~~~v~AAclYiACR~~~~p~t 160 (181)
.++.|.+++..|+.+.. +... .+...+... + +...+||||||+|++..+.+++
T Consensus 151 P~~fl~~~~~~l~~~~~~~~~~~~~A~~l~~~s~~~~~~l~~~Ps~IAaAai~lA~~~~~~~~~ 214 (258)
T 2i53_A 151 PYQFLLKYAKQLKGDKNKIQKLVQMAWTFVNDSLCTTLSLQWEPEIIAVAVMYLAGRLCKFEIQ 214 (258)
T ss_dssp HHHHHHHHHHTBCSCHHHHHHHHHHHHHHHHHHTTTTGGGTSCHHHHHHHHHHHHHHHHTCCGG
T ss_pred hHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHcCCchhccChHHHHHHHHHHHHHHhCCCCC
Confidence 45677888888888763 2222 333333221 2 8999999999999999988765
No 49
>2k5r_A Uncharacterized protein XF2673; solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Xylella fastidiosa TEMECULA1}
Probab=92.33 E-value=0.059 Score=37.74 Aligned_cols=31 Identities=10% Similarity=0.096 Sum_probs=23.9
Q ss_pred CCCCCCCCCCCCCceeEeCC---------------------------CCceEeCCCcccc
Q 030241 1 MTDAFCSDCKKHTEVVFDHS---------------------------AGDTVCSECGLVL 33 (181)
Q Consensus 1 m~~~~Cp~Cg~~~~iv~D~~---------------------------~G~~vC~~CG~Vl 33 (181)
|+...||.|+. ++..+.. +|.++|.+||+..
T Consensus 6 LdILaCP~cK~--pL~l~~~~~~~~~~ca~~~~~~~~~~~~~~~e~~~~~LvC~~c~~~Y 63 (97)
T 2k5r_A 6 LHLLCSPDTRQ--PLSLLESKGLEALNKAIVSGTVQRADGSIQNQSLHEALITRDRKQVF 63 (97)
T ss_dssp CSSCCCCTTSS--CCEECCHHHHHHHHHHHHHTCCBCTTSCBCCCCCSEEEECTTSCEEE
T ss_pred hhheECCCCCC--cccccccchhhhhhhhhhccccccccccccccccCCeEEcCCCCCCc
Confidence 34567999996 4555554 7899999999986
No 50
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=92.13 E-value=0.5 Score=37.79 Aligned_cols=54 Identities=9% Similarity=0.053 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHhCCchHHHHH--HHHHHHHhh--h---CHHHHHHHHHHHHHHhCC-CCc
Q 030241 106 ILAFKTIATMSDRIGQMRYIRRW--KIKSLVEAE--I---KTHYWLLACTLLVDKKTS-HAL 159 (181)
Q Consensus 106 ~~a~~~I~~ia~~L~Lp~~v~e~--~i~k~a~~~--l---~~~~v~AAclYiACR~~~-~p~ 159 (181)
....+.|-+++..++|+..+.-. .++...... + +...+++||+|+|||.+. .|.
T Consensus 53 ~~lvdwl~~v~~~~~l~~etl~lAv~~~DRfls~~~v~~~~lqLv~~acl~iA~K~eE~~~p 114 (254)
T 2f2c_A 53 TILLTWMHLLCESFELDKSVFPLSVSILDRYLCKKQGTKKTLQKIGAACVLIGSKIRTVKPM 114 (254)
T ss_dssp HHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHTTTSCCCTTTHHHHHHHHHHHHHHHHCSSCC
T ss_pred HHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHccCCcCHHHccHHHHHHHHHHHHhcccCCC
Confidence 45778899999999999887666 677776554 3 788999999999999965 453
No 51
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=92.05 E-value=0.079 Score=38.42 Aligned_cols=34 Identities=29% Similarity=0.402 Sum_probs=23.6
Q ss_pred CCCCCCCCCCCCCceeEe--CCCCceEeCCCccccc
Q 030241 1 MTDAFCSDCKKHTEVVFD--HSAGDTVCSECGLVLE 34 (181)
Q Consensus 1 m~~~~Cp~Cg~~~~iv~D--~~~G~~vC~~CG~Vl~ 34 (181)
|.+..||+||+--.+..| ...+.+.|..||+...
T Consensus 2 ~~~~FCp~CgnlL~~~~~~~~~~~~~~C~~C~y~~~ 37 (122)
T 1twf_I 2 TTFRFCRDCNNMLYPREDKENNRLLFECRTCSYVEE 37 (122)
T ss_dssp CCCCBCSSSCCBCEEEEETTTTEEEEECSSSSCEEE
T ss_pred CCCCcccccCccCcccccCcCCCCEEECCcCCCeee
Confidence 456899999972222233 3456799999999765
No 52
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=91.67 E-value=0.13 Score=32.08 Aligned_cols=31 Identities=19% Similarity=0.446 Sum_probs=21.6
Q ss_pred CCCCCCCCCCceeEeC------CCC---ceEeCCCcccccc
Q 030241 4 AFCSDCKKHTEVVFDH------SAG---DTVCSECGLVLES 35 (181)
Q Consensus 4 ~~Cp~Cg~~~~iv~D~------~~G---~~vC~~CG~Vl~e 35 (181)
..||.||. ..+++.. +++ .++|.+||....+
T Consensus 16 ~~Cp~Cg~-~~~~~~q~Q~rsadep~T~fy~C~~Cg~~w~~ 55 (57)
T 1qyp_A 16 ITCPKCGN-DTAYWWEMQTRAGDEPSTIFYKCTKCGHTWRS 55 (57)
T ss_dssp CCCTTTCC-SEEEEEEECCSSSSCSSEEEEEESSSCCEEEC
T ss_pred eECCCCCC-CEEEEEEeecccCCCCCcEEEEcCCCCCEecc
Confidence 46999997 5665543 223 4799999987544
No 53
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA-direct polymerase, primosome, late protein, ATP-binding; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2
Probab=91.53 E-value=0.13 Score=41.35 Aligned_cols=28 Identities=25% Similarity=0.460 Sum_probs=21.8
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCccc
Q 030241 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLV 32 (181)
Q Consensus 4 ~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~V 32 (181)
..||.||+...+-++ .+|...|..||.-
T Consensus 15 ~~CP~Cg~~d~~~~~-~dg~~~C~~Cg~~ 42 (255)
T 1nui_A 15 IPCDNCGSSDGNSLF-SDGHTFCYVCEKW 42 (255)
T ss_dssp ECCSSSCCSSCEEEE-TTSCEEETTTCCE
T ss_pred CcCCCCCCCCCceEe-CCCCeecccCCCc
Confidence 469999984456666 4688999999975
No 54
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=91.44 E-value=0.15 Score=36.41 Aligned_cols=31 Identities=13% Similarity=0.374 Sum_probs=21.5
Q ss_pred CCCCCCCCCCCCceeEeCCCC----ceEeCCCccccc
Q 030241 2 TDAFCSDCKKHTEVVFDHSAG----DTVCSECGLVLE 34 (181)
Q Consensus 2 ~~~~Cp~Cg~~~~iv~D~~~G----~~vC~~CG~Vl~ 34 (181)
.+..||+||+- +......| ..+|..||++..
T Consensus 3 ~m~FCp~Cgn~--L~~~~~~~~~~~~~~C~~C~y~~~ 37 (113)
T 3h0g_I 3 NFQYCIECNNM--LYPREDKVDRVLRLACRNCDYSEI 37 (113)
T ss_dssp CCCCCSSSCCC--CEECCCTTTCCCCEECSSSCCEEC
T ss_pred cceeCcCCCCE--eeEcccCCCCeeEEECCCCCCeEE
Confidence 35789999972 33333322 699999999764
No 55
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=91.23 E-value=0.082 Score=34.81 Aligned_cols=27 Identities=22% Similarity=0.816 Sum_probs=17.4
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCcc-cc
Q 030241 4 AFCSDCKKHTEVVFDHSAGDTVCSECGL-VL 33 (181)
Q Consensus 4 ~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~-Vl 33 (181)
..|++||. .+..+ ....+.|.+||. ||
T Consensus 29 Y~C~~CG~--~~e~~-~~d~irCp~CG~RIL 56 (70)
T 1twf_L 29 YICAECSS--KLSLS-RTDAVRCKDCGHRIL 56 (70)
T ss_dssp EECSSSCC--EECCC-TTSTTCCSSSCCCCC
T ss_pred EECCCCCC--cceeC-CCCCccCCCCCceEe
Confidence 46999986 22222 344567999998 55
No 56
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=90.63 E-value=0.15 Score=34.64 Aligned_cols=32 Identities=25% Similarity=0.508 Sum_probs=25.7
Q ss_pred CCCCCCCCCCCceeEeCCCCceEeCCCccccccC
Q 030241 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESH 36 (181)
Q Consensus 3 ~~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~Vl~e~ 36 (181)
...||.||+ +. +.....|-.-|..||.++.-.
T Consensus 35 ky~CpfCGk-~~-vkR~a~GIW~C~kCg~~~AGG 66 (83)
T 3j21_i 35 KHTCPVCGR-KA-VKRISTGIWQCQKCGATFAGG 66 (83)
T ss_dssp CBCCSSSCS-SC-EEEEETTEEEETTTCCEEECC
T ss_pred ccCCCCCCC-ce-eEecCcCeEEcCCCCCEEeCC
Confidence 467999998 44 566789999999999998543
No 57
>2qdj_A Retinoblastoma-associated protein; cyclin fold, cyclin wedge, antitumor protein; 2.00A {Homo sapiens}
Probab=90.23 E-value=0.56 Score=39.17 Aligned_cols=44 Identities=11% Similarity=0.145 Sum_probs=35.3
Q ss_pred HHHHHHHHhCCchHHHHH--HHHHHHHh------h-h-CHHHHHHHHHHHHHHh
Q 030241 111 TIATMSDRIGQMRYIRRW--KIKSLVEA------E-I-KTHYWLLACTLLVDKK 154 (181)
Q Consensus 111 ~I~~ia~~L~Lp~~v~e~--~i~k~a~~------~-l-~~~~v~AAclYiACR~ 154 (181)
+..++|..|+|++.+.++ .+|+.+.. . . ..+.+-.||||+||..
T Consensus 5 rF~~lC~~Lnld~~~~~~Aw~~~~~~~~~~~~~~~~~~~~~~~w~acLY~a~~~ 58 (304)
T 2qdj_A 5 DFTALCQKLKIPDHVRERAWLTWEKVSSVDGVLGGYIQKKKELWGICIFIAAVD 58 (304)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHC----------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhccccccCCCccchHHHHHHhHHHHhhc
Confidence 567889999999999888 99999866 2 2 6677777779999953
No 58
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=90.01 E-value=0.083 Score=31.93 Aligned_cols=18 Identities=22% Similarity=0.501 Sum_probs=9.4
Q ss_pred CCCCCCCCCCCCCceeEeCCCC
Q 030241 1 MTDAFCSDCKKHTEVVFDHSAG 22 (181)
Q Consensus 1 m~~~~Cp~Cg~~~~iv~D~~~G 22 (181)
|....|+.||- |+|++.|
T Consensus 2 m~~y~C~vCGy----vyd~~~G 19 (46)
T 6rxn_A 2 MQKYVCNVCGY----EYDPAEH 19 (46)
T ss_dssp CCCEEETTTCC----EECGGGG
T ss_pred CCEEECCCCCe----EEeCCcC
Confidence 44455666662 4555444
No 59
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=90.00 E-value=0.17 Score=33.45 Aligned_cols=32 Identities=31% Similarity=0.385 Sum_probs=25.3
Q ss_pred CCCCCCCCCCCceeEeCCCCceEeCCCccccccC
Q 030241 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESH 36 (181)
Q Consensus 3 ~~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~Vl~e~ 36 (181)
...||.||+ +. +.....|-.-|..||.++.-.
T Consensus 26 ky~C~fCgk-~~-vkR~a~GIW~C~~C~~~~AGG 57 (72)
T 3jyw_9 26 RYDCSFCGK-KT-VKRGAAGIWTCSCCKKTVAGG 57 (72)
T ss_dssp CBCCSSCCS-SC-BSBCSSSCBCCSSSCCCCCCS
T ss_pred CccCCCCCC-ce-eEecCCCeEECCCCCCEEeCC
Confidence 357999997 44 566789999999999997543
No 60
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=89.91 E-value=0.15 Score=33.88 Aligned_cols=32 Identities=22% Similarity=0.414 Sum_probs=25.0
Q ss_pred CCCCCCCCCCCceeEeCCCCceEeCCCccccccC
Q 030241 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESH 36 (181)
Q Consensus 3 ~~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~Vl~e~ 36 (181)
...||.||. +. +.-...|-..|..||.++.-.
T Consensus 27 ky~C~fCgk-~~-vkR~a~GIW~C~~C~~~~AGG 58 (73)
T 1ffk_W 27 KYKCPVCGF-PK-LKRASTSIWVCGHCGYKIAGG 58 (73)
T ss_pred CccCCCCCC-ce-eEEEEeEEEECCCCCcEEECC
Confidence 357999997 44 455678999999999997543
No 61
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=89.83 E-value=0.12 Score=31.98 Aligned_cols=11 Identities=36% Similarity=0.954 Sum_probs=5.2
Q ss_pred eEeCCCccccc
Q 030241 24 TVCSECGLVLE 34 (181)
Q Consensus 24 ~vC~~CG~Vl~ 34 (181)
.+|..||.|.+
T Consensus 4 y~C~~CGyvYd 14 (52)
T 1e8j_A 4 YVCTVCGYEYD 14 (52)
T ss_dssp EECSSSCCCCC
T ss_pred EEeCCCCeEEc
Confidence 34455554444
No 62
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=89.64 E-value=0.15 Score=36.75 Aligned_cols=32 Identities=25% Similarity=0.502 Sum_probs=24.8
Q ss_pred CCCCCCCCCCCceeEeCCCCceEeCCCccccccC
Q 030241 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESH 36 (181)
Q Consensus 3 ~~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~Vl~e~ 36 (181)
...||.||. .. +.-...|-.-|..||.++.-.
T Consensus 60 kytCPfCGk-~~-vKR~avGIW~C~~Cgk~fAGG 91 (116)
T 3cc2_Z 60 DHACPNCGE-DR-VDRQGTGIWQCSYCDYKFTGG 91 (116)
T ss_dssp CEECSSSCC-EE-EEEEETTEEEETTTCCEEECC
T ss_pred CCcCCCCCC-ce-eEecCceeEECCCCCCEEECC
Confidence 357999997 44 455678999999999997533
No 63
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=89.50 E-value=0.19 Score=34.71 Aligned_cols=30 Identities=33% Similarity=0.591 Sum_probs=24.5
Q ss_pred CCCCCCCCCCCceeEeCCCCceEeCCCccccc
Q 030241 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLE 34 (181)
Q Consensus 3 ~~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~Vl~ 34 (181)
...||.||+ +. +.-...|-.-|..||.++.
T Consensus 36 ky~CpfCgk-~~-vkR~a~GIW~C~~Cg~~~A 65 (92)
T 3iz5_m 36 KYFCEFCGK-FA-VKRKAVGIWGCKDCGKVKA 65 (92)
T ss_dssp CBCCTTTCS-SC-BEEEETTEEECSSSCCEEE
T ss_pred cccCcccCC-Ce-eEecCcceEEcCCCCCEEe
Confidence 357999998 44 5666899999999999974
No 64
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=89.09 E-value=0.17 Score=31.53 Aligned_cols=18 Identities=28% Similarity=0.689 Sum_probs=8.8
Q ss_pred CCCCCCCCCCCCCceeEeCCCC
Q 030241 1 MTDAFCSDCKKHTEVVFDHSAG 22 (181)
Q Consensus 1 m~~~~Cp~Cg~~~~iv~D~~~G 22 (181)
|....|+.||- |+|++.|
T Consensus 1 m~~y~C~vCGy----vYd~~~G 18 (54)
T 4rxn_A 1 MKKYTCTVCGY----IYDPEDG 18 (54)
T ss_dssp CCCEEETTTCC----EECTTTC
T ss_pred CCceECCCCCe----EECCCcC
Confidence 44445555552 3555444
No 65
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 4b6a_p 1s1i_9
Probab=88.85 E-value=0.22 Score=34.47 Aligned_cols=30 Identities=33% Similarity=0.421 Sum_probs=24.4
Q ss_pred CCCCCCCCCCCceeEeCCCCceEeCCCccccc
Q 030241 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLE 34 (181)
Q Consensus 3 ~~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~Vl~ 34 (181)
...||.||. +. +.-...|-.-|..||.++.
T Consensus 36 ky~CpfCgk-~~-vkR~a~GIW~C~~C~~~~A 65 (92)
T 3izc_m 36 RYDCSFCGK-KT-VKRGAAGIWTCSCCKKTVA 65 (92)
T ss_dssp CCCCSSSCS-SC-CEEEETTEEECTTTCCEEE
T ss_pred CCcCCCCCC-ce-eeecccceEEcCCCCCEEe
Confidence 467999997 44 4566889999999999974
No 66
>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Y 4a1c_Y 4a1e_Y
Probab=87.87 E-value=0.26 Score=34.75 Aligned_cols=29 Identities=24% Similarity=0.423 Sum_probs=24.0
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCccccc
Q 030241 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLE 34 (181)
Q Consensus 4 ~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~Vl~ 34 (181)
..||.||. +. +.....|-.-|..||.++.
T Consensus 37 y~CpfCgk-~~-vKR~a~GIW~C~kCg~~~A 65 (103)
T 4a17_Y 37 YGCPFCGK-VA-VKRAAVGIWKCKPCKKIIA 65 (103)
T ss_dssp EECTTTCC-EE-EEEEETTEEEETTTTEEEE
T ss_pred CCCCCCCC-ce-eeecCcceEEcCCCCCEEe
Confidence 56999997 44 5667899999999999974
No 67
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=87.42 E-value=0.32 Score=41.26 Aligned_cols=52 Identities=6% Similarity=0.018 Sum_probs=39.3
Q ss_pred HHHHHHHHHHhCCchHHHHH--HHHHHHH-hh---h--CHHHHHHHHHHHHHHhCCCCcc
Q 030241 109 FKTIATMSDRIGQMRYIRRW--KIKSLVE-AE---I--KTHYWLLACTLLVDKKTSHALL 160 (181)
Q Consensus 109 ~~~I~~ia~~L~Lp~~v~e~--~i~k~a~-~~---l--~~~~v~AAclYiACR~~~~p~t 160 (181)
++.|.+++..|+++..+... .+...+. .. + +...+||||||+|++..+.+++
T Consensus 154 ~~fL~~~~~~l~~~~~l~~~A~~ll~~sl~~t~l~l~y~Ps~IAaAAI~lA~~~l~~~~p 213 (358)
T 2pk2_A 154 HTHVVKCTQLVRASKDLAQTSYFMATNSLHLTTFSLQYTPPVVACVCIHLACKWSNWEIP 213 (358)
T ss_dssp THHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCGGGTSCHHHHTTTTTTTHHHHTTCCCC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhccCHHHHHHHHHHHHHHHhCCCCC
Confidence 45778888889988877666 4555554 22 2 8999999999999999886654
No 68
>1dxg_A Desulforedoxin; non-heme iron protein, rubredoxin type metal center, electron transport; 1.80A {Desulfovibrio gigas} SCOP: g.41.5.2 PDB: 1dcd_A 1dhg_A 1cfw_A 2lk5_A 2lk6_A
Probab=86.58 E-value=0.37 Score=27.28 Aligned_cols=26 Identities=31% Similarity=0.673 Sum_probs=15.5
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCccc
Q 030241 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLV 32 (181)
Q Consensus 4 ~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~V 32 (181)
.+|+.||. --.+.....|+++| ||.=
T Consensus 7 Y~C~~CGn-ivev~~~g~~~l~C--CG~~ 32 (36)
T 1dxg_A 7 YKCELCGQ-VVKVLEEGGGTLVC--CGED 32 (36)
T ss_dssp EECTTTCC-EEEEEECCSSCEEE--TTEE
T ss_pred EEcCCCCc-EEEEEeCCCcCEEe--CCcc
Confidence 46888885 22233356677777 6643
No 69
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=85.38 E-value=0.26 Score=30.38 Aligned_cols=23 Identities=30% Similarity=0.741 Sum_probs=19.1
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCccc
Q 030241 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLV 32 (181)
Q Consensus 4 ~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~V 32 (181)
..||.|+. . ...|-.-|..||..
T Consensus 15 ~iCpkC~a-~-----~~~gaw~CrKCG~~ 37 (51)
T 3j21_g 15 YVCLRCGA-T-----NPWGAKKCRKCGYK 37 (51)
T ss_dssp EECTTTCC-E-----ECTTCSSCSSSSSC
T ss_pred ccCCCCCC-c-----CCCCceecCCCCCc
Confidence 57999997 2 35899999999987
No 70
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=85.37 E-value=0.5 Score=34.76 Aligned_cols=29 Identities=24% Similarity=0.432 Sum_probs=19.6
Q ss_pred CCCCCCCCCCCceeEeC----CCCceEeCCCcccc
Q 030241 3 DAFCSDCKKHTEVVFDH----SAGDTVCSECGLVL 33 (181)
Q Consensus 3 ~~~Cp~Cg~~~~iv~D~----~~G~~vC~~CG~Vl 33 (181)
+..||+||+ -+.... .....+|..||++.
T Consensus 24 ~~FCPeCgN--mL~pked~~~~~l~~~CrtCgY~~ 56 (133)
T 3qt1_I 24 FRFCRDCNN--MLYPREDKENNRLLFECRTCSYVE 56 (133)
T ss_dssp CCBCTTTCC--BCBCCBCTTTCCBCCBCSSSCCBC
T ss_pred CeeCCCCCC--EeeECccCCCceeEEECCCCCCcE
Confidence 478999997 222221 12359999999975
No 71
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=85.09 E-value=1.2 Score=35.82 Aligned_cols=51 Identities=8% Similarity=-0.136 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHhCCchHHHHH--HHHHHHH-hh-h---CHHHHHHHHHHHHHHhCCCC
Q 030241 108 AFKTIATMSDRIGQMRYIRRW--KIKSLVE-AE-I---KTHYWLLACTLLVDKKTSHA 158 (181)
Q Consensus 108 a~~~I~~ia~~L~Lp~~v~e~--~i~k~a~-~~-l---~~~~v~AAclYiACR~~~~p 158 (181)
.++.|.+++..++++..+... .+...+. +. + ++..+||||||+|++..+.+
T Consensus 138 p~~fl~~~~~~~~~~~~~~~~a~~l~e~sl~~~~~~~~~Ps~iAaAai~lA~~~l~~~ 195 (269)
T 2b9r_A 138 PLHFLRRASKIGEVDVEQHTLAKYLMELTMLDYDMVHFPPSQIAAGAFSLALKILDNG 195 (269)
T ss_dssp HHHHHHHHHHSSCCCHHHHHHHHHHHHHGGGCGGGSSSCTTHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhhhhcCCHHHHHHHHHHHHHHHhCCC
Confidence 456777888888887766554 4444443 22 3 88999999999999987754
No 72
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=85.04 E-value=1.4 Score=36.67 Aligned_cols=23 Identities=9% Similarity=0.037 Sum_probs=20.6
Q ss_pred CHHHHHHHHHHHHHHhCCCCccc
Q 030241 139 KTHYWLLACTLLVDKKTSHALLR 161 (181)
Q Consensus 139 ~~~~v~AAclYiACR~~~~p~t~ 161 (181)
....+||||||+|++..+.+++.
T Consensus 208 ~Ps~IAaAai~lA~~~~~~~~~~ 230 (323)
T 1jkw_A 208 TPSQIALTAILSSASRAGITMES 230 (323)
T ss_dssp CHHHHHHHHHHHHHHHHSCCCTT
T ss_pred CHHHHHHHHHHHHHHHcCCChHH
Confidence 89999999999999998887654
No 73
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=84.93 E-value=0.48 Score=31.13 Aligned_cols=27 Identities=22% Similarity=0.575 Sum_probs=22.1
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCccccc
Q 030241 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLE 34 (181)
Q Consensus 4 ~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~Vl~ 34 (181)
..|| ||. -.+.|...-..-|. ||.++.
T Consensus 5 v~C~-C~~--~~~~~~~~kT~~C~-CG~~~~ 31 (71)
T 1gh9_A 5 FRCD-CGR--ALYSREGAKTRKCV-CGRTVN 31 (71)
T ss_dssp EEET-TSC--CEEEETTCSEEEET-TTEEEE
T ss_pred EECC-CCC--EEEEcCCCcEEECC-CCCeee
Confidence 3699 997 36677788889999 999986
No 74
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=83.67 E-value=0.39 Score=29.94 Aligned_cols=12 Identities=25% Similarity=0.825 Sum_probs=5.9
Q ss_pred eEeCCCcccccc
Q 030241 24 TVCSECGLVLES 35 (181)
Q Consensus 24 ~vC~~CG~Vl~e 35 (181)
.+|+.||.|.++
T Consensus 4 y~C~~CGyvYd~ 15 (55)
T 2v3b_B 4 WQCVVCGFIYDE 15 (55)
T ss_dssp EEETTTCCEEET
T ss_pred EEeCCCCeEECC
Confidence 445555555443
No 75
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=83.64 E-value=1.2 Score=27.16 Aligned_cols=29 Identities=31% Similarity=0.635 Sum_probs=18.8
Q ss_pred CCCCCCCCCCCceeEeC---------CCCceEeCCCccc
Q 030241 3 DAFCSDCKKHTEVVFDH---------SAGDTVCSECGLV 32 (181)
Q Consensus 3 ~~~Cp~Cg~~~~iv~D~---------~~G~~vC~~CG~V 32 (181)
...||.||. .+.++-. -+=.++|.+||..
T Consensus 9 ~~~Cp~Cg~-~~a~f~q~Q~RsaDE~mT~Fy~C~~Cg~~ 46 (50)
T 1tfi_A 9 LFTCGKCKK-KNCTYTQVQTRSADEPMTTFVVCNECGNR 46 (50)
T ss_dssp CSCCSSSCS-SCEEEEEECSSSSSSCCEEEEEESSSCCE
T ss_pred ccCCCCCCC-CEEEEEEecCcCCCCCceEEEEcCCCCCe
Confidence 357999997 4544321 2224799999963
No 76
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=82.38 E-value=0.47 Score=32.28 Aligned_cols=31 Identities=23% Similarity=0.535 Sum_probs=22.3
Q ss_pred CCCCCCCCCc--eeEeC--CCCceEeCCCcccccc
Q 030241 5 FCSDCKKHTE--VVFDH--SAGDTVCSECGLVLES 35 (181)
Q Consensus 5 ~Cp~Cg~~~~--iv~D~--~~G~~vC~~CG~Vl~e 35 (181)
.||.|+.... +..|. ..|.+.|..||.-.+-
T Consensus 25 ~CPfCnh~~sV~vkidk~~~~g~l~C~~Cg~~~~~ 59 (85)
T 1wii_A 25 TCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQT 59 (85)
T ss_dssp CCTTTCCSSCEEEEEETTTTEEEEEESSSCCEEEE
T ss_pred cCCCCCCCCeEEEEEEccCCEEEEEcccCCCeEEe
Confidence 5999996423 34443 5789999999987653
No 77
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=82.03 E-value=0.5 Score=28.43 Aligned_cols=31 Identities=26% Similarity=0.587 Sum_probs=20.0
Q ss_pred CCCCCCCCCC-CceeEeCCCCceEeCCCcccc
Q 030241 3 DAFCSDCKKH-TEVVFDHSAGDTVCSECGLVL 33 (181)
Q Consensus 3 ~~~Cp~Cg~~-~~iv~D~~~G~~vC~~CG~Vl 33 (181)
...|.+|+.. +..--....|.++|..||+-.
T Consensus 4 ~~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~ 35 (46)
T 1gnf_A 4 ARECVNCGATATPLWRRDRTGHYLCNACGLYH 35 (46)
T ss_dssp SCCCTTTCCCCCSSCBCCTTCCCBCSHHHHHH
T ss_pred CCCCCCcCCCCCCcCccCCCCCccchHHHHHH
Confidence 4568888863 222233356788888888864
No 78
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=81.34 E-value=0.58 Score=30.63 Aligned_cols=13 Identities=31% Similarity=0.861 Sum_probs=7.6
Q ss_pred ceEeCCCcccccc
Q 030241 23 DTVCSECGLVLES 35 (181)
Q Consensus 23 ~~vC~~CG~Vl~e 35 (181)
..+|+.||.|.++
T Consensus 7 ~y~C~vCGyiYd~ 19 (70)
T 1dx8_A 7 KYECEACGYIYEP 19 (70)
T ss_dssp CEEETTTCCEECT
T ss_pred eEEeCCCCEEEcC
Confidence 4566666666553
No 79
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=81.22 E-value=0.52 Score=29.98 Aligned_cols=24 Identities=21% Similarity=0.591 Sum_probs=18.4
Q ss_pred CCCCCCCCCCCCceeEeCCCCceEeCCCcccc
Q 030241 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVL 33 (181)
Q Consensus 2 ~~~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~Vl 33 (181)
-..+||.||. ..+ ..+|..||...
T Consensus 5 ~mr~C~~Cgv-YTL-------k~~CP~CG~~T 28 (60)
T 2apo_B 5 RMKKCPKCGL-YTL-------KEICPKCGEKT 28 (60)
T ss_dssp CCEECTTTCC-EES-------SSBCSSSCSBC
T ss_pred hceeCCCCCC-Eec-------cccCcCCCCcC
Confidence 3578999996 333 56899999885
No 80
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=80.89 E-value=0.6 Score=27.63 Aligned_cols=31 Identities=29% Similarity=0.770 Sum_probs=20.8
Q ss_pred CCCCCCCCC-CceeEeCCCCceEeCCCccccc
Q 030241 4 AFCSDCKKH-TEVVFDHSAGDTVCSECGLVLE 34 (181)
Q Consensus 4 ~~Cp~Cg~~-~~iv~D~~~G~~vC~~CG~Vl~ 34 (181)
..|-+|+.. +..--....|.++|..||+-..
T Consensus 2 ~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~k 33 (43)
T 2vut_I 2 TTCTNCFTQTTPLWRRNPEGQPLCNACGLFLK 33 (43)
T ss_dssp CCCSSSCCCCCSCCEECTTSCEECHHHHHHHH
T ss_pred CcCCccCCCCCCccccCCCCCcccHHHHHHHH
Confidence 468888863 2233444678888999997643
No 81
>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B30; helix-turn-helix, Zn-binding protein, DNA-binding, transcrip transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A
Probab=80.55 E-value=0.67 Score=30.51 Aligned_cols=30 Identities=23% Similarity=0.480 Sum_probs=18.2
Q ss_pred CCCCCCCCCCCceeEeC------CCC---------ceEeCCCcccc
Q 030241 3 DAFCSDCKKHTEVVFDH------SAG---------DTVCSECGLVL 33 (181)
Q Consensus 3 ~~~Cp~Cg~~~~iv~D~------~~G---------~~vC~~CG~Vl 33 (181)
.|+||.||. ..++.+. -.| -.+|..||.++
T Consensus 2 ~m~Cp~Cg~-~~l~~~~~~~~~~~~G~~~~I~~Vp~~~C~~CGE~~ 46 (78)
T 3ga8_A 2 HMKCPVCHQ-GEMVSGIKDIPYTFRGRKTVLKGIHGLYCVHCEESI 46 (78)
T ss_dssp -CBCTTTSS-SBEEEEEEEEEEEETTEEEEEEEEEEEEETTTCCEE
T ss_pred ceECCCCCC-CeeEeEEEEEEEEECCEEEEEcCceeEECCCCCCEE
Confidence 478999996 3333221 122 25799999876
No 82
>3u50_C Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.50A {Tetrahymena thermophila}
Probab=80.38 E-value=1 Score=34.53 Aligned_cols=25 Identities=20% Similarity=0.394 Sum_probs=20.9
Q ss_pred CCCCCCCCCceeEeCCCCceEeCCCccc
Q 030241 5 FCSDCKKHTEVVFDHSAGDTVCSECGLV 32 (181)
Q Consensus 5 ~Cp~Cg~~~~iv~D~~~G~~vC~~CG~V 32 (181)
.||.|++. + ++...|...|..||..
T Consensus 44 ACp~CnKK--V-~~~~~g~~~CekC~~~ 68 (172)
T 3u50_C 44 RCTCQGKS--V-LKYHGDSFFCESCQQF 68 (172)
T ss_dssp ECTTSCCC--E-EEETTTEEEETTTTEE
T ss_pred hchhhCCE--e-eeCCCCeEECCCCCCC
Confidence 59999973 3 4678899999999998
No 83
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=80.06 E-value=0.6 Score=31.49 Aligned_cols=17 Identities=18% Similarity=0.356 Sum_probs=13.0
Q ss_pred CCceEeCCCccccccCC
Q 030241 21 AGDTVCSECGLVLESHS 37 (181)
Q Consensus 21 ~G~~vC~~CG~Vl~e~~ 37 (181)
....+|..||+|.++..
T Consensus 25 m~~y~C~vCGyvYD~~~ 41 (81)
T 2kn9_A 25 YKLFRCIQCGFEYDEAL 41 (81)
T ss_dssp CCEEEETTTCCEEETTT
T ss_pred cceEEeCCCCEEEcCCc
Confidence 34689999999988643
No 84
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=78.22 E-value=1.4 Score=29.44 Aligned_cols=27 Identities=15% Similarity=0.731 Sum_probs=19.8
Q ss_pred CCCCCCCCCceeEeCCCCceEeCCCcccc
Q 030241 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVL 33 (181)
Q Consensus 5 ~Cp~Cg~~~~iv~D~~~G~~vC~~CG~Vl 33 (181)
+||.|+. .++.+.....+.|..||...
T Consensus 27 wCP~C~~--~~~~~~~~~~v~C~~C~~~F 53 (86)
T 2ct7_A 27 WCAQCSF--GFIYEREQLEATCPQCHQTF 53 (86)
T ss_dssp CCSSSCC--CEECCCSCSCEECTTTCCEE
T ss_pred ECcCCCc--hheecCCCCceEeCCCCCcc
Confidence 5999985 35556566668898888765
No 85
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=78.05 E-value=0.98 Score=32.10 Aligned_cols=32 Identities=19% Similarity=0.418 Sum_probs=20.2
Q ss_pred CCCCCCCCCCCceeE-------eC-------CC-CceEeCCCcccccc
Q 030241 3 DAFCSDCKKHTEVVF-------DH-------SA-GDTVCSECGLVLES 35 (181)
Q Consensus 3 ~~~Cp~Cg~~~~iv~-------D~-------~~-G~~vC~~CG~Vl~e 35 (181)
.|+||.||+ ..++. +. .. --.+|.+||.++-+
T Consensus 2 ~M~Cp~Cg~-~~~~~~~~~~~~~~kg~~~~v~~v~~~~C~~CGE~~~d 48 (133)
T 3o9x_A 2 HMKCPVCHQ-GEMVSGIKDIPYTFRGRKTVLKGIHGLYCVHCEESIMN 48 (133)
T ss_dssp CCBCTTTSS-SBEEEEEEEEEEEETTEEEEEEEEEEEEESSSSCEECC
T ss_pred CcCCCcCCC-CceeeceEEEEEEECCEEEEECCCceeECCCCCCEeec
Confidence 478999997 32221 11 11 25789999988743
No 86
>4elj_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor protein, phosphorylation, cell; HET: TPO; 2.70A {Homo sapiens}
Probab=78.00 E-value=5.6 Score=36.52 Aligned_cols=47 Identities=11% Similarity=0.141 Sum_probs=36.2
Q ss_pred HHHHHHHHhCCchHHHHH--HHHHHHHh------h-h--CHHHHHHHHHHHHHHhCCC
Q 030241 111 TIATMSDRIGQMRYIRRW--KIKSLVEA------E-I--KTHYWLLACTLLVDKKTSH 157 (181)
Q Consensus 111 ~I~~ia~~L~Lp~~v~e~--~i~k~a~~------~-l--~~~~v~AAclYiACR~~~~ 157 (181)
+.+.+|..|++.+.+.++ +.|+.+.. . + ...++.|+.+|+||+.++.
T Consensus 7 ~f~~lC~~Ln~d~~~~~~Aw~~~~~~~~~~~~l~~tleg~~~~W~aC~ly~~~~~~gn 64 (656)
T 4elj_A 7 DFTALCQKLKIPDHVRERAWLTWEKVSSVDGVLGGYIQKKKELWGICIFIAAVDLDEM 64 (656)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHCSCC-----CCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHhccccccCCcccchHHhhhhhheeeeeccCC
Confidence 567899999999999888 99998864 2 2 6677777777777776543
No 87
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=77.94 E-value=5.4 Score=31.92 Aligned_cols=49 Identities=4% Similarity=0.009 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHhCCchHHHH----H--HHHHHHH-hh-h---CHHHHHHHHHHHHHHhCC
Q 030241 108 AFKTIATMSDRIGQMRYIRR----W--KIKSLVE-AE-I---KTHYWLLACTLLVDKKTS 156 (181)
Q Consensus 108 a~~~I~~ia~~L~Lp~~v~e----~--~i~k~a~-~~-l---~~~~v~AAclYiACR~~~ 156 (181)
.++.|..+...++++....+ . .+...+. +. + +...+||||||+|++..+
T Consensus 157 p~~fl~~~~~~l~~~~~~~~~~~~~a~~~l~~~~~d~~~~~~~PS~iAaAai~lA~~~l~ 216 (271)
T 2w96_A 157 PHDFIEHFLSKMPEAEENKQIIRKHAQTFVALCATDVKFISNPPSMVAAGSVVAAVQGLN 216 (271)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHTSTHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhC
Confidence 45677788888998876532 2 3333332 33 2 899999999999998654
No 88
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=77.47 E-value=0.75 Score=29.78 Aligned_cols=32 Identities=28% Similarity=0.738 Sum_probs=20.9
Q ss_pred CCCCCCCCCC-CceeEeCCCCceEeCCCccccc
Q 030241 3 DAFCSDCKKH-TEVVFDHSAGDTVCSECGLVLE 34 (181)
Q Consensus 3 ~~~Cp~Cg~~-~~iv~D~~~G~~vC~~CG~Vl~ 34 (181)
...|-+||.. ++.--...+|.++|..||+-..
T Consensus 9 ~~~C~~C~t~~Tp~WR~gp~G~~LCNaCGl~~~ 41 (66)
T 4gat_A 9 PTTCTNCFTQTTPLWRRNPEGQPLCNACGLFLK 41 (66)
T ss_dssp SCCCTTTCCCCCSSCEEETTTEEECHHHHHHHH
T ss_pred CCCCCCCCCCCCCcCCcCCCCCCccHHHHHHHH
Confidence 3568888863 2233333578888888888764
No 89
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=76.16 E-value=3.3 Score=33.02 Aligned_cols=51 Identities=6% Similarity=-0.166 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHhCCch-HHHHH--HHHHHHH-hh--h---CHHHHHHHHHHHHHHhCCCC
Q 030241 108 AFKTIATMSDRIGQMR-YIRRW--KIKSLVE-AE--I---KTHYWLLACTLLVDKKTSHA 158 (181)
Q Consensus 108 a~~~I~~ia~~L~Lp~-~v~e~--~i~k~a~-~~--l---~~~~v~AAclYiACR~~~~p 158 (181)
.++.|..++..++++. .+... .+...+. +. + +...+||||||+|++..+.|
T Consensus 139 p~~fl~~~~~~l~~~~~~~~~~a~~l~e~sl~~~~~~~~~~Ps~iAaAai~lA~~~~~~~ 198 (260)
T 2cch_B 139 VNQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLPSVIAGAAFHLALYTVTGQ 198 (260)
T ss_dssp HHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHCHHHHTTSCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhHHHHhCCCHHHHHHHHHHHHHHHhCCC
Confidence 5678888999999886 44443 4444432 32 2 89999999999999977654
No 90
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=75.39 E-value=6 Score=31.65 Aligned_cols=51 Identities=6% Similarity=-0.081 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHhCCchHHHHH--HHHHHHHhh--h---CHHHHHHHHHHHHHHhCCC
Q 030241 107 LAFKTIATMSDRIGQMRYIRRW--KIKSLVEAE--I---KTHYWLLACTLLVDKKTSH 157 (181)
Q Consensus 107 ~a~~~I~~ia~~L~Lp~~v~e~--~i~k~a~~~--l---~~~~v~AAclYiACR~~~~ 157 (181)
...+.|-+++..++|...+.-. .++...... + +...+.+||+++|++.+..
T Consensus 51 ~lvdWl~ev~~~~~l~~eT~~lAv~~lDRfLs~~~v~~~~lqLvg~tcl~iAsK~eE~ 108 (252)
T 1f5q_B 51 VLTTWMFCVCKDLRQDNNVFPLAVALLDELFLSTRIDRENYQSTAAVALHIAGKVRAY 108 (252)
T ss_dssp HHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHhc
Confidence 4677899999999998776555 566655443 3 7789999999999997654
No 91
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=75.12 E-value=3.7 Score=32.61 Aligned_cols=50 Identities=6% Similarity=-0.193 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHhCCchHHHH----H--HHHHHHH-hh-h---CHHHHHHHHHHHHHHhCCC
Q 030241 108 AFKTIATMSDRIGQMRYIRR----W--KIKSLVE-AE-I---KTHYWLLACTLLVDKKTSH 157 (181)
Q Consensus 108 a~~~I~~ia~~L~Lp~~v~e----~--~i~k~a~-~~-l---~~~~v~AAclYiACR~~~~ 157 (181)
.++-|..+...++++....+ . .+...+. +. + +...+||||||+|.+..+.
T Consensus 151 p~~fl~~~~~~~~~~~~~~~~~~~~a~~~le~~l~d~~~~~~~PS~iAaAai~lA~~~l~~ 211 (257)
T 1g3n_C 151 ATDVTSFLLLKLVGGSQHLDFWHHEVNTLITKALVDPLTGSLPASIISAAGCALLVPANVI 211 (257)
T ss_dssp HHHHHHHHHHHHSCSSTTHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHCCGGGS
T ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhCcchhCcCHHHHHHHHHHHHHHHhCC
Confidence 56678888888988765322 1 2333332 22 2 8999999999999988774
No 92
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=74.50 E-value=2.4 Score=34.33 Aligned_cols=30 Identities=17% Similarity=0.433 Sum_probs=21.7
Q ss_pred CCCCCCCCCCCceeEeCCCCceEeCCCccccc
Q 030241 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLE 34 (181)
Q Consensus 3 ~~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~Vl~ 34 (181)
..+||.||+. .......-..+|..||.+.=
T Consensus 107 ~~fC~~CG~~--~~~~~~~~~~~C~~C~~~~y 136 (269)
T 1vk6_A 107 HKYCGYCGHE--MYPSKTEWAMLCSHCRERYY 136 (269)
T ss_dssp TSBCTTTCCB--EEECSSSSCEEESSSSCEEC
T ss_pred CCccccCCCc--CccCCCceeeeCCCCCCEec
Confidence 4689999973 33444556789999998753
No 93
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=74.32 E-value=0.88 Score=31.07 Aligned_cols=16 Identities=19% Similarity=0.511 Sum_probs=12.8
Q ss_pred CCceEeCCCccccccC
Q 030241 21 AGDTVCSECGLVLESH 36 (181)
Q Consensus 21 ~G~~vC~~CG~Vl~e~ 36 (181)
....+|..||+|.++.
T Consensus 33 m~~y~C~vCGyvYD~~ 48 (87)
T 1s24_A 33 YLKWICITCGHIYDEA 48 (87)
T ss_dssp CCEEEETTTTEEEETT
T ss_pred CceEECCCCCeEecCC
Confidence 4568999999998854
No 94
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=71.96 E-value=1.7 Score=32.84 Aligned_cols=29 Identities=21% Similarity=0.665 Sum_probs=20.1
Q ss_pred CCCCCCCCC-CceeEeCCC--CceEeCCCccc
Q 030241 4 AFCSDCKKH-TEVVFDHSA--GDTVCSECGLV 32 (181)
Q Consensus 4 ~~Cp~Cg~~-~~iv~D~~~--G~~vC~~CG~V 32 (181)
+.|+.|+++ |.++.|.+. =.+.|..||..
T Consensus 104 VlC~~C~sPdT~L~~~~~~r~~~l~C~ACGa~ 135 (157)
T 2e9h_A 104 VLCPECENPETDLHVNPKKQTIGNSCKACGYR 135 (157)
T ss_dssp TSCTTTCCSCCEEEEETTTTEEEEECSSSCCE
T ss_pred EECCCCCCCccEEEEecCCCEEEEEccCCCCC
Confidence 579999985 345554333 35679999987
No 95
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=71.14 E-value=1.8 Score=27.68 Aligned_cols=27 Identities=26% Similarity=0.651 Sum_probs=15.9
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCcccc
Q 030241 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVL 33 (181)
Q Consensus 4 ~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~Vl 33 (181)
.+|.+||.. +..+ ....+-|.+||.=|
T Consensus 22 Y~C~~Cg~~--~~l~-~~~~iRC~~CG~RI 48 (63)
T 3h0g_L 22 YLCADCGAR--NTIQ-AKEVIRCRECGHRV 48 (63)
T ss_dssp CBCSSSCCB--CCCC-SSSCCCCSSSCCCC
T ss_pred EECCCCCCe--eecC-CCCceECCCCCcEE
Confidence 468888762 2223 23557788887643
No 96
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=71.05 E-value=10 Score=29.88 Aligned_cols=46 Identities=4% Similarity=-0.111 Sum_probs=30.8
Q ss_pred HHHHHHHHHhCCchHHHH----H--HHHHHHH-hh-h---CHHHHHHHHHHHHHHhC
Q 030241 110 KTIATMSDRIGQMRYIRR----W--KIKSLVE-AE-I---KTHYWLLACTLLVDKKT 155 (181)
Q Consensus 110 ~~I~~ia~~L~Lp~~v~e----~--~i~k~a~-~~-l---~~~~v~AAclYiACR~~ 155 (181)
+-|..+...++++....+ . .+...+. +. + +...+||||||+|.+..
T Consensus 154 ~fl~~~~~~~~~~~~~~~~~~~~a~~ll~~~l~d~~~~~~~PS~iAaAai~la~~~~ 210 (254)
T 2f2c_A 154 DFLIPLCNALKIPEDLWPQLYEAASTTICKALIQPNIALLSPGLICAGGLLTTIETD 210 (254)
T ss_dssp GSHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSGGGTTSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHcCcchhccCHHHHHHHHHHHHHHhc
Confidence 456778888888765422 1 2333322 22 2 89999999999999985
No 97
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=69.98 E-value=1.9 Score=30.60 Aligned_cols=22 Identities=14% Similarity=0.338 Sum_probs=17.0
Q ss_pred CceeEeCCCCceEeCCCccccc
Q 030241 13 TEVVFDHSAGDTVCSECGLVLE 34 (181)
Q Consensus 13 ~~iv~D~~~G~~vC~~CG~Vl~ 34 (181)
..+......+...|.+||...+
T Consensus 63 a~L~i~~~p~~~~C~~CG~~~e 84 (119)
T 2kdx_A 63 AILDIVDEKVELECKDCSHVFK 84 (119)
T ss_dssp CCEEEEEECCEEECSSSSCEEC
T ss_pred cEEEEEeccceEEcCCCCCEEe
Confidence 3566677788899999998875
No 98
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Probab=69.42 E-value=1.8 Score=36.44 Aligned_cols=16 Identities=19% Similarity=0.544 Sum_probs=12.6
Q ss_pred eEeCCCccccccCCcc
Q 030241 24 TVCSECGLVLESHSID 39 (181)
Q Consensus 24 ~vC~~CG~Vl~e~~id 39 (181)
..|.+||.|.-+...+
T Consensus 54 ~~C~~Cg~v~~~~~~~ 69 (416)
T 4e2x_A 54 GRCDSCEMVQLTEEVP 69 (416)
T ss_dssp EEETTTCCEEESSCCC
T ss_pred EECCCCCceeecCcCC
Confidence 4699999998766554
No 99
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=68.82 E-value=2.2 Score=26.14 Aligned_cols=13 Identities=23% Similarity=0.797 Sum_probs=8.6
Q ss_pred eEeCCCccccccC
Q 030241 24 TVCSECGLVLESH 36 (181)
Q Consensus 24 ~vC~~CG~Vl~e~ 36 (181)
.+|..||+|.++.
T Consensus 3 ~~C~~CGyvYd~~ 15 (52)
T 1yk4_A 3 LSCKICGYIYDED 15 (52)
T ss_dssp EEESSSSCEEETT
T ss_pred EEeCCCCeEECCC
Confidence 5677777777653
No 100
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=68.01 E-value=1.2 Score=28.58 Aligned_cols=31 Identities=32% Similarity=0.805 Sum_probs=17.1
Q ss_pred CCCCCCCCC-CceeEeCCCCceEeCCCccccc
Q 030241 4 AFCSDCKKH-TEVVFDHSAGDTVCSECGLVLE 34 (181)
Q Consensus 4 ~~Cp~Cg~~-~~iv~D~~~G~~vC~~CG~Vl~ 34 (181)
..|-+||.. +..--....|.++|..||+-..
T Consensus 8 ~~C~~C~tt~Tp~WR~gp~G~~LCNACGl~~~ 39 (63)
T 3dfx_A 8 TSCANCQTTTTTLWRRNANGDPVCNACGLYYK 39 (63)
T ss_dssp CCCTTTCCSCCSSCCCCTTSCCCCHHHHHHHH
T ss_pred CcCCCcCCCCCCccCCCCCCCchhhHHHHHHH
Confidence 457777752 1222233556677777777654
No 101
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=67.63 E-value=1.6 Score=27.69 Aligned_cols=24 Identities=21% Similarity=0.558 Sum_probs=17.7
Q ss_pred CCCCCCCCCCCCceeEeCCCCceEeCCCcccc
Q 030241 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVL 33 (181)
Q Consensus 2 ~~~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~Vl 33 (181)
-+.+|+.||. ..+ ..+|..||...
T Consensus 4 ~mr~C~~Cg~-YTL-------k~~CP~CG~~t 27 (60)
T 2aus_D 4 RIRKCPKCGR-YTL-------KETCPVCGEKT 27 (60)
T ss_dssp CCEECTTTCC-EES-------SSBCTTTCSBC
T ss_pred cceECCCCCC-EEc-------cccCcCCCCcc
Confidence 3578999996 322 46799999775
No 102
>1d0q_A DNA primase; zinc-binding motif, protein, transferase; HET: DNA; 1.71A {Geobacillus stearothermophilus} SCOP: g.41.3.2
Probab=67.45 E-value=4.3 Score=27.93 Aligned_cols=26 Identities=15% Similarity=0.316 Sum_probs=21.5
Q ss_pred CCCCCCCC-CceeEeCCCCceEeCCCc
Q 030241 5 FCSDCKKH-TEVVFDHSAGDTVCSECG 30 (181)
Q Consensus 5 ~Cp~Cg~~-~~iv~D~~~G~~vC~~CG 30 (181)
.||.|+.. +++.+++..|...|-.||
T Consensus 39 ~CPfh~e~~pSf~V~~~k~~~~Cf~cg 65 (103)
T 1d0q_A 39 LCPFHGEKTPSFSVSPEKQIFHCFGCG 65 (103)
T ss_dssp CCSSSCCSSCCEEEETTTTEEEETTTC
T ss_pred ECCCCCCCCCcEEEEcCCCEEEECCCC
Confidence 59999853 368888888999999998
No 103
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=67.05 E-value=3.9 Score=27.41 Aligned_cols=29 Identities=17% Similarity=0.481 Sum_probs=19.6
Q ss_pred CCCCCCCCCCCCCceeEeCCCCceEeCCCccccc
Q 030241 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLE 34 (181)
Q Consensus 1 m~~~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~Vl~ 34 (181)
|+ ..||.|+. ++..| .+...|..||.-+.
T Consensus 1 M~-~~CP~C~~--~l~~~--~~~~~C~~C~~~~~ 29 (81)
T 2jrp_A 1 ME-ITCPVCHH--ALERN--GDTAHCETCAKDFS 29 (81)
T ss_dssp CC-CCCSSSCS--CCEEC--SSEEECTTTCCEEE
T ss_pred CC-CCCCCCCC--ccccC--CCceECccccccCC
Confidence 66 78999986 35443 45566888887553
No 104
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=66.88 E-value=1.8 Score=33.18 Aligned_cols=29 Identities=21% Similarity=0.677 Sum_probs=19.7
Q ss_pred CCCCCCCCC-CceeEeC--CCCceEeCCCccc
Q 030241 4 AFCSDCKKH-TEVVFDH--SAGDTVCSECGLV 32 (181)
Q Consensus 4 ~~Cp~Cg~~-~~iv~D~--~~G~~vC~~CG~V 32 (181)
+.|+.|+++ |.++.|. ..=.+.|..||..
T Consensus 97 VlC~~C~sPdT~L~k~~~~r~~~l~C~ACGa~ 128 (170)
T 2g2k_A 97 VLCPECENPETDLHVNPKKQTIGNSCKACGYR 128 (170)
T ss_dssp HSCTTTSSSCEEEEEETTTTEEEEEETTTCCC
T ss_pred EECCCCCCCccEEEEecCCCEEEEEccccCCc
Confidence 469999985 3455532 3335679999976
No 105
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=66.65 E-value=3.9 Score=30.55 Aligned_cols=27 Identities=26% Similarity=0.721 Sum_probs=17.6
Q ss_pred CCCCCCCCCCCceeEeCCCC----ceEeCCCcc
Q 030241 3 DAFCSDCKKHTEVVFDHSAG----DTVCSECGL 31 (181)
Q Consensus 3 ~~~Cp~Cg~~~~iv~D~~~G----~~vC~~CG~ 31 (181)
..+||.||.. . .....+| ..+|..||.
T Consensus 3 ~~~C~~CG~~-~-~~~~~~G~~~~~~~~~~~~~ 33 (189)
T 3cng_A 3 MKFCSQCGGE-V-ILRIPEGDTLPRYICPKCHT 33 (189)
T ss_dssp CCBCTTTCCB-C-EEECCTTCSSCEEEETTTTE
T ss_pred cccCchhCCc-c-ccccccCCCCcceECCCCCC
Confidence 3689999973 2 2222233 469999994
No 106
>2con_A RUH-035 protein, NIN one binding protein; ribosome, RNA binding protein, unknown function, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.15.1
Probab=65.98 E-value=2.6 Score=28.16 Aligned_cols=11 Identities=36% Similarity=1.063 Sum_probs=9.1
Q ss_pred CCCCCCCCCCC
Q 030241 1 MTDAFCSDCKK 11 (181)
Q Consensus 1 m~~~~Cp~Cg~ 11 (181)
|....||.||.
T Consensus 28 ~~k~FCp~CGn 38 (79)
T 2con_A 28 MNRVFCGHCGN 38 (79)
T ss_dssp SSCCSCSSSCC
T ss_pred cccccccccCc
Confidence 56788999997
No 107
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=65.67 E-value=5.2 Score=27.79 Aligned_cols=28 Identities=29% Similarity=0.755 Sum_probs=19.7
Q ss_pred CCCCCCCCCCCCCceeEeCCCCceEeCCCcccc
Q 030241 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVL 33 (181)
Q Consensus 1 m~~~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~Vl 33 (181)
|+ ..||.|+. ++..+ .|...|..|+.-+
T Consensus 31 M~-~~CP~Cq~--eL~~~--g~~~hC~~C~~~f 58 (101)
T 2jne_A 31 ME-LHCPQCQH--VLDQD--NGHARCRSCGEFI 58 (101)
T ss_dssp CC-CBCSSSCS--BEEEE--TTEEEETTTCCEE
T ss_pred cc-ccCccCCC--cceec--CCEEECccccchh
Confidence 55 68999996 55554 5566699998744
No 108
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=65.47 E-value=5.3 Score=33.24 Aligned_cols=32 Identities=19% Similarity=0.458 Sum_probs=20.5
Q ss_pred CCCCCCCCCCCCceeEeCCCC-----------ceEeCCCcccc
Q 030241 2 TDAFCSDCKKHTEVVFDHSAG-----------DTVCSECGLVL 33 (181)
Q Consensus 2 ~~~~Cp~Cg~~~~iv~D~~~G-----------~~vC~~CG~Vl 33 (181)
...+||+||+...+.+=.-+| -.+|..||.-+
T Consensus 221 ~R~~C~~Cg~~~~l~y~~~e~~~~~~~~~~~r~e~C~~C~~Yl 263 (309)
T 2fiy_A 221 VRIKCSHCEESKHLAYLSLEHDGQPAEKAVLRAETCPSCQGYL 263 (309)
T ss_dssp CTTSCSSSCCCSCCEEECCCC-CCCSTTCSEEEEEETTTTEEE
T ss_pred cCcCCcCCCCCCCeeEEEecCccccCCCcceEEEEcccccchH
Confidence 356899999744443322222 47899999776
No 109
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=65.20 E-value=6.8 Score=27.95 Aligned_cols=30 Identities=27% Similarity=0.490 Sum_probs=19.9
Q ss_pred CCCCCCCCCCceeEeC---------CCCceEeCCCccccc
Q 030241 4 AFCSDCKKHTEVVFDH---------SAGDTVCSECGLVLE 34 (181)
Q Consensus 4 ~~Cp~Cg~~~~iv~D~---------~~G~~vC~~CG~Vl~ 34 (181)
..||.||. ...++-. -+=.++|.+||..-.
T Consensus 73 ~~Cp~C~~-~~a~~~q~q~rsade~~t~fy~C~~C~~~w~ 111 (122)
T 1twf_I 73 RECPKCHS-RENVFFQSQQRRKDTSMVLFFVCLSCSHIFT 111 (122)
T ss_dssp CCCTTTCC-CCEEEEECSSCCTTCCCCEEEEETTTCCEEE
T ss_pred CCCCCCCC-CEEEEEEecCccCCCCceEEEEeCCCCCEec
Confidence 57999997 4544432 223479999998643
No 110
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=63.65 E-value=1.8 Score=28.34 Aligned_cols=10 Identities=30% Similarity=0.836 Sum_probs=4.9
Q ss_pred ceEeCCCccc
Q 030241 23 DTVCSECGLV 32 (181)
Q Consensus 23 ~~vC~~CG~V 32 (181)
..+|.+||..
T Consensus 8 ~~~C~nC~tt 17 (71)
T 2kae_A 8 SFQCSNCSVT 17 (71)
T ss_dssp CCCCSSSCCS
T ss_pred CCcCCccCCC
Confidence 3455555544
No 111
>1l1o_C Replication protein A 70 kDa DNA-binding subunit; eukaryotic SSB, ssDNA binding protein, OB-fold; 2.80A {Homo sapiens} SCOP: b.40.4.3
Probab=62.53 E-value=4.3 Score=30.87 Aligned_cols=26 Identities=31% Similarity=0.736 Sum_probs=20.7
Q ss_pred CCCC--CCCCCceeEeCCCCceEeCCCcccc
Q 030241 5 FCSD--CKKHTEVVFDHSAGDTVCSECGLVL 33 (181)
Q Consensus 5 ~Cp~--Cg~~~~iv~D~~~G~~vC~~CG~Vl 33 (181)
.||. |++ . |.+...|...|..|+...
T Consensus 45 aC~~~~CnK-K--v~~~~~g~~~CekC~~~~ 72 (181)
T 1l1o_C 45 ACPTQDCNK-K--VIDQQNGLYRCEKCDTEF 72 (181)
T ss_dssp BCCSTTCCC-B--CEEETTTEEEETTTTEEE
T ss_pred CCCchhcCC-c--cccCCCCeEECCCCCCcC
Confidence 5999 997 2 346678999999999765
No 112
>2fnf_X Putative RAS effector NORE1; zinc, signal transduction, apoptosis, cysteine rich domain; NMR {Mus musculus}
Probab=62.36 E-value=5.7 Score=25.68 Aligned_cols=29 Identities=21% Similarity=0.543 Sum_probs=21.0
Q ss_pred CCCCCCCCCCCCceeEeCCCCceEeCCCccccccC
Q 030241 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESH 36 (181)
Q Consensus 2 ~~~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~Vl~e~ 36 (181)
.+.+|-.||+ ++ ..+| +.|.+||++.=.+
T Consensus 34 ~pt~C~~C~~---~l--~~qG-~kC~~C~~~cHkk 62 (72)
T 2fnf_X 34 GPGWCDLCGR---EV--LRQA-LRCANCKFTCHSE 62 (72)
T ss_dssp SCCBCTTTSS---BC--SSCC-EECTTSSCEECTG
T ss_pred CCcchhhhhH---HH--HhCc-CccCCCCCeechh
Confidence 3578999996 33 4556 6799999987544
No 113
>3q87_A Putative uncharacterized protein ECU08_1170; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}
Probab=61.80 E-value=1.5 Score=31.92 Aligned_cols=17 Identities=35% Similarity=0.817 Sum_probs=14.0
Q ss_pred EeCCCCceEeCCCcccc
Q 030241 17 FDHSAGDTVCSECGLVL 33 (181)
Q Consensus 17 ~D~~~G~~vC~~CG~Vl 33 (181)
++-.+|.++|.+||.+.
T Consensus 93 ~~V~EG~L~Cp~cgr~y 109 (125)
T 3q87_A 93 IDVVEGSLRCDMCGLIY 109 (125)
T ss_dssp EEEEEEEEEETTTCCEE
T ss_pred eEEEEEEEECCCCCCEe
Confidence 34467999999999986
No 114
>1rfh_A RAS association (ralgds/AF-6) domain family 5; zinc, signal transduction, apoptosis, cysteine rich domain, metal binding protein; NMR {Mus musculus}
Probab=61.01 E-value=5.8 Score=24.50 Aligned_cols=26 Identities=19% Similarity=0.586 Sum_probs=19.2
Q ss_pred CCCCCCCCCCCceeEeCCCCceEeCCCccccc
Q 030241 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLE 34 (181)
Q Consensus 3 ~~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~Vl~ 34 (181)
+.+|-.||+ ++ ..+| +.|.+||++.-
T Consensus 22 pt~C~~C~~---~i--~kqg-~kC~~C~~~cH 47 (59)
T 1rfh_A 22 PGWCDLCGR---EV--LRQA-LRCANCKFTCH 47 (59)
T ss_dssp CEECTTTCS---EE--CSCC-EECTTTSCEEC
T ss_pred CeEchhcch---hh--hhCc-cEeCCCCCeEe
Confidence 467999986 33 4566 67999999864
No 115
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=60.55 E-value=5.5 Score=32.13 Aligned_cols=30 Identities=20% Similarity=0.657 Sum_probs=19.9
Q ss_pred CCCCCCCCCCce---eEeCCCCceEeCCCccccc
Q 030241 4 AFCSDCKKHTEV---VFDHSAGDTVCSECGLVLE 34 (181)
Q Consensus 4 ~~Cp~Cg~~~~i---v~D~~~G~~vC~~CG~Vl~ 34 (181)
++||.||+ ..+ .-+..-.|-.|.+|+.-.|
T Consensus 35 ~yCPnCG~-~~l~~f~nN~PVaDF~C~~C~EeyE 67 (257)
T 4esj_A 35 SYCPNCGN-NPLNHFENNRPVADFYCNHCSEEFE 67 (257)
T ss_dssp CCCTTTCC-SSCEEC----CCCEEECTTTCCEEE
T ss_pred CcCCCCCC-hhhhhccCCCcccccccCCcchhhe
Confidence 57999997 333 1222556789999987665
No 116
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=60.50 E-value=5.3 Score=26.27 Aligned_cols=30 Identities=17% Similarity=0.625 Sum_probs=21.9
Q ss_pred CCCCCCC--CCCCCceeEeCCCCceEeC-----CCcccc
Q 030241 2 TDAFCSD--CKKHTEVVFDHSAGDTVCS-----ECGLVL 33 (181)
Q Consensus 2 ~~~~Cp~--Cg~~~~iv~D~~~G~~vC~-----~CG~Vl 33 (181)
...+||. |+. .+..+.....+.|. .||...
T Consensus 24 ~~~~CP~p~C~~--~v~~~~~~~~v~C~~~~~~~C~~~F 60 (80)
T 2jmo_A 24 GGVLCPRPGCGA--GLLPEPDQRKVTCEGGNGLGCGFAF 60 (80)
T ss_dssp SSCCCCSSSCCC--CCCCCSCTTSBCTTSSSTTCCSCCE
T ss_pred CcEECCCCCCCc--ccEECCCCCcCCCCCCCCCCCCCee
Confidence 3567998 985 45566667778897 898765
No 117
>1vzi_A Desulfoferrodoxin; ferrocyanide, microspectrophotometry, redox states, photoreduction, dinuclear iron cluster, oxidoreductase; 1.15A {Desulfovibrio baarsii} SCOP: b.1.13.1 g.41.5.2 PDB: 1vzh_A* 1vzg_A 2ji1_A 2ji2_A 2ji3_A 1dfx_A
Probab=60.47 E-value=4.1 Score=29.37 Aligned_cols=28 Identities=25% Similarity=0.598 Sum_probs=18.9
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCccccc
Q 030241 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLE 34 (181)
Q Consensus 4 ~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~Vl~ 34 (181)
.+|+.||. --.+.....|.++| ||.-++
T Consensus 8 YkC~~CGn-ivev~~~g~~~l~C--CG~~m~ 35 (126)
T 1vzi_A 8 YKCEVCGN-IVEVLNGGIGELVC--CNQDMK 35 (126)
T ss_dssp EECTTTCC-EEEEEECCSSCEEE--TTEECE
T ss_pred EEcCCCCe-EEEEEcCCCcceec--CCcccc
Confidence 46999996 22233567778888 887654
No 118
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=59.58 E-value=3 Score=26.31 Aligned_cols=22 Identities=41% Similarity=0.915 Sum_probs=13.4
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCccc
Q 030241 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLV 32 (181)
Q Consensus 4 ~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~V 32 (181)
..||+||. . . .---||.+||+-
T Consensus 31 ~~c~~cGe-~--~----~~H~vc~~CG~Y 52 (60)
T 3v2d_5 31 VPCPECKA-M--K----PPHTVCPECGYY 52 (60)
T ss_dssp EECTTTCC-E--E----CTTSCCTTTCEE
T ss_pred eECCCCCC-e--e----cceEEcCCCCcC
Confidence 45788875 1 1 123578888854
No 119
>2kv1_A Methionine-R-sulfoxide reductase B1; MSRB1, SELR, metal-binding, nucleus, oxidoreductase, seleniu; NMR {Mus musculus}
Probab=59.38 E-value=5.2 Score=28.96 Aligned_cols=31 Identities=26% Similarity=0.583 Sum_probs=26.0
Q ss_pred CCCceEeCCCccccc--cCCccccccccccccC
Q 030241 20 SAGDTVCSECGLVLE--SHSIDETSEWRTFANE 50 (181)
Q Consensus 20 ~~G~~vC~~CG~Vl~--e~~id~~~Ewr~F~~~ 50 (181)
+.|.++|..||.-|= +.-.|++.-|.+|.+.
T Consensus 17 e~G~Y~C~~Cg~pLF~S~~KfdSg~GWPSF~~~ 49 (124)
T 2kv1_A 17 EPGVYVCAKCSYELFSSHSKYAHSSPWPAFTET 49 (124)
T ss_dssp CCEEEEETTTCCBCCCTTSCCCCCSSSCCBSCC
T ss_pred CCEEEEecCCCCcccccCCcccCCCCCceeecc
Confidence 789999999998874 5557889999999754
No 120
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=58.75 E-value=12 Score=24.62 Aligned_cols=27 Identities=15% Similarity=0.179 Sum_probs=23.0
Q ss_pred HHHHHHHHhCCchHHHHHHHHHHHHhh
Q 030241 111 TIATMSDRIGQMRYIRRWKIKSLVEAE 137 (181)
Q Consensus 111 ~I~~ia~~L~Lp~~v~e~~i~k~a~~~ 137 (181)
...+||.+||+++..+.+.+|++..++
T Consensus 31 Ta~~IAkkLg~sK~~vNr~LY~L~kkG 57 (75)
T 1sfu_A 31 TAISLSNRLKINKKKINQQLYKLQKED 57 (75)
T ss_dssp CHHHHHHHTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHCC
Confidence 456899999999999888888888766
No 121
>2kao_A Methionine-R-sulfoxide reductase B1; mouse reduced methionine sulfoxide reductase B1 (MSRB1) (SEC95Cys mutant, selenocysteine; NMR {Mus musculus} PDB: 2kv1_A
Probab=58.66 E-value=6.9 Score=28.33 Aligned_cols=32 Identities=25% Similarity=0.564 Sum_probs=26.2
Q ss_pred CCCCceEeCCCccccc--cCCccccccccccccC
Q 030241 19 HSAGDTVCSECGLVLE--SHSIDETSEWRTFANE 50 (181)
Q Consensus 19 ~~~G~~vC~~CG~Vl~--e~~id~~~Ewr~F~~~ 50 (181)
.+.|.++|..||.-|= +.-.|++.-|.+|.+.
T Consensus 16 ~~~GiY~C~~Cg~pLF~S~~KFdSG~GWPSF~~p 49 (124)
T 2kao_A 16 FEPGVYVCAKCSYELFSSHSKYAHSSPWPAFTET 49 (124)
T ss_dssp CCCCEEEESSSCCCCCCTTTSCCCCCSSCCBSCC
T ss_pred CCCEEEEeCCCCCccccCcccccCCCCChhhCcc
Confidence 3789999999998874 4456889999999853
No 122
>1ovx_A ATP-dependent CLP protease ATP-binding subunit CL; treble CLEF zinc finger, homodimer, metal binding protein; NMR {Escherichia coli} SCOP: g.39.1.11
Probab=58.16 E-value=4.9 Score=25.98 Aligned_cols=26 Identities=27% Similarity=0.631 Sum_probs=17.6
Q ss_pred CCCCCCCCCCC----ceeEeCCCCceEeCCCc
Q 030241 3 DAFCSDCKKHT----EVVFDHSAGDTVCSECG 30 (181)
Q Consensus 3 ~~~Cp~Cg~~~----~iv~D~~~G~~vC~~CG 30 (181)
..+|..||+.. .++.- .|..||.+|=
T Consensus 18 ~~~CSFCGK~e~eV~~LIaG--pgvyICdeCI 47 (67)
T 1ovx_A 18 LLYCSFCGKSQHEVRKLIAG--PSVYICDECV 47 (67)
T ss_dssp CCCCTTTCCCTTTSSSEEEC--SSCEEEHHHH
T ss_pred CcEecCCCCCHHHHcccCCC--CCCChhHHHH
Confidence 46899999742 23332 4678999884
No 123
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=57.96 E-value=6 Score=32.90 Aligned_cols=30 Identities=20% Similarity=0.514 Sum_probs=18.7
Q ss_pred CCCCCCCCCCCc--eeEe--CCCC--ceEeCCCccc
Q 030241 3 DAFCSDCKKHTE--VVFD--HSAG--DTVCSECGLV 32 (181)
Q Consensus 3 ~~~Cp~Cg~~~~--iv~D--~~~G--~~vC~~CG~V 32 (181)
...||.||+... ++.. ..+| ...|.-||.-
T Consensus 182 ~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~ 217 (309)
T 2fiy_A 182 RTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACE 217 (309)
T ss_dssp CSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCE
T ss_pred CCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCE
Confidence 468999998432 2221 1356 5899999853
No 124
>3p8b_A DNA-directed RNA polymerase, subunit E''; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus}
Probab=56.95 E-value=2.6 Score=28.30 Aligned_cols=23 Identities=26% Similarity=0.780 Sum_probs=12.2
Q ss_pred CCCCCCCCCCCCCceeEeCCCCceEeCCCcc
Q 030241 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGL 31 (181)
Q Consensus 1 m~~~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~ 31 (181)
|....|.+|+. + .+.+ .|.+||.
T Consensus 21 m~~rAC~~C~~---v-~~~d----~CPnCgs 43 (81)
T 3p8b_A 21 MSEKACRHCHY---I-TSED----RCPVCGS 43 (81)
T ss_dssp -CCEEETTTCB---E-ESSS----SCTTTCC
T ss_pred hhHHHHhhCCC---c-cCCC----CCCCCCC
Confidence 34455777774 2 2221 3777776
No 125
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=56.86 E-value=16 Score=29.91 Aligned_cols=48 Identities=8% Similarity=-0.025 Sum_probs=29.7
Q ss_pred HHHHHHHHHhCCchHHH----HH--HHHHHH-Hhh-h---CHHHHHHHHHHHHHHhCCC
Q 030241 110 KTIATMSDRIGQMRYIR----RW--KIKSLV-EAE-I---KTHYWLLACTLLVDKKTSH 157 (181)
Q Consensus 110 ~~I~~ia~~L~Lp~~v~----e~--~i~k~a-~~~-l---~~~~v~AAclYiACR~~~~ 157 (181)
..|..+...++++.... .. .+.... .+. + +...+||||||+|.+..+.
T Consensus 173 ~fl~~~l~~l~~~~~~~~~~~~~a~~~l~lsl~d~~~l~~~PS~IAaAai~lA~~~l~~ 231 (306)
T 3g33_B 173 DFLAFILHRLSLPRDRQALVKKHAQTFLALCATDYTFAMYPPSMIATGSIGAAVQGLGA 231 (306)
T ss_dssp GGHHHHHHTSSCCTTTHHHHHHHHHHHHHHHHHCGGGTTSCHHHHHHHHHHHHHHTCC-
T ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhhhhhccCCHHHHHHHHHHHHHHHhcC
Confidence 35666777777764321 12 233322 222 2 8999999999999997763
No 126
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=56.34 E-value=3.8 Score=29.20 Aligned_cols=32 Identities=25% Similarity=0.591 Sum_probs=22.8
Q ss_pred CCCCCCCCCC-CceeEeCCCCceEeCCCccccc
Q 030241 3 DAFCSDCKKH-TEVVFDHSAGDTVCSECGLVLE 34 (181)
Q Consensus 3 ~~~Cp~Cg~~-~~iv~D~~~G~~vC~~CG~Vl~ 34 (181)
...|.+||.. ++.---..+|.++|..||+...
T Consensus 5 ~~~C~~Cg~~~Tp~WRr~~~g~~lCnaCgl~~K 37 (115)
T 4hc9_A 5 GRECVNCGATSTPLWRRDGTGHYLCNACGLYHK 37 (115)
T ss_dssp -CCCTTTCCSCCSSCEECTTSCEECHHHHHHHH
T ss_pred CCCCCCCCCccCCcceECCCCCCcCcchhhhhh
Confidence 3579999963 2333445678999999999764
No 127
>2ds5_A CLPX, ATP-dependent CLP protease ATP-binding subunit CLPX; treble cleft zinc finger, metal binding protein, protein binding; HET: PG4; 1.50A {Escherichia coli} SCOP: g.39.1.11 PDB: 2ds6_A 2ds8_A 2ds7_A
Probab=55.81 E-value=5.8 Score=24.15 Aligned_cols=25 Identities=28% Similarity=0.700 Sum_probs=16.3
Q ss_pred CCCCCCCCCCC----ceeEeCCCCceEeCCC
Q 030241 3 DAFCSDCKKHT----EVVFDHSAGDTVCSEC 29 (181)
Q Consensus 3 ~~~Cp~Cg~~~----~iv~D~~~G~~vC~~C 29 (181)
..+|..||+.. .++.- .|-.||.+|
T Consensus 11 ~~~CSFCGk~~~ev~~LIaG--pgv~IC~eC 39 (51)
T 2ds5_A 11 LLYCSFCGKSQHEVRKLIAG--PSVYICDEC 39 (51)
T ss_dssp CCBCTTTCCBTTTSSCEEEC--SSCEEEHHH
T ss_pred CcEecCCCCCHHHhcccCCC--CCCEehHHH
Confidence 46799999632 23332 367899887
No 128
>1u5k_A Hypothetical protein; OBD-fold, Zn-binding, recombination,replication; 2.00A {Deinococcus radiodurans} SCOP: b.40.4.13 g.45.1.2 PDB: 1w3s_A 2v1c_C
Probab=55.47 E-value=7 Score=30.73 Aligned_cols=28 Identities=29% Similarity=0.571 Sum_probs=22.1
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCcc
Q 030241 4 AFCSDCKKHTEVVFDHSAGDTVCSECGL 31 (181)
Q Consensus 4 ~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~ 31 (181)
..|-.||.+....+++..|-.+|.+|..
T Consensus 151 ~~C~~cg~~~~~~fs~~~Gg~~c~~~~~ 178 (244)
T 1u5k_A 151 ARCARCGAPDPEHPDPLGGQLLCSKCAA 178 (244)
T ss_dssp SBCTTTCCBSCCEECTTTSSEECTTTCS
T ss_pred CccccCCCCCCCcEecccCEEECcccCC
Confidence 4699999753467888999999999964
No 129
>2zkr_2 60S ribosomal protein L37E; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} SCOP: i.1.1.1
Probab=55.31 E-value=4.2 Score=28.18 Aligned_cols=23 Identities=22% Similarity=0.780 Sum_probs=16.9
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCcc
Q 030241 4 AFCSDCKKHTEVVFDHSAGDTVCSECGL 31 (181)
Q Consensus 4 ~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~ 31 (181)
..||.||+ ... .. -...|..||+
T Consensus 17 ~lCrRCG~-~sf--H~--qK~~CgkCGY 39 (97)
T 2zkr_2 17 TLCRRCGS-KAY--HL--QKSTCGKCGY 39 (97)
T ss_dssp ECCTTTCS-SCE--ET--TSCCBTTTCT
T ss_pred CcCCCCCC-ccC--cC--ccccCcccCC
Confidence 46999997 443 22 2569999999
No 130
>1ryq_A DNA-directed RNA polymerase, subunit E''; structural genomics, zinc, PSI, protein structure initiative; 1.38A {Pyrococcus furiosus} SCOP: g.41.9.3 PDB: 3qqc_E
Probab=54.66 E-value=3.4 Score=26.91 Aligned_cols=30 Identities=27% Similarity=0.744 Sum_probs=17.7
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCccccccCCcccccccccc
Q 030241 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTF 47 (181)
Q Consensus 4 ~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~Vl~e~~id~~~Ewr~F 47 (181)
..|.+|+. ++ .+..|.+||. .+.+++|..+
T Consensus 12 ~AC~~C~~---~~-----~~~~CPnC~s------~~tS~~w~G~ 41 (69)
T 1ryq_A 12 KACRHCHY---IT-----SEDRCPVCGS------RDLSEEWFDL 41 (69)
T ss_dssp EEETTTCB---EE-----SSSSCTTTCC------CCEESCEEEE
T ss_pred hhHHhCCc---cc-----cCCcCCCccC------CccCCccceE
Confidence 45888874 43 3457888882 1345666543
No 131
>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=54.06 E-value=8.6 Score=33.09 Aligned_cols=26 Identities=23% Similarity=0.544 Sum_probs=20.7
Q ss_pred CCCC--CCCCCceeEeCCCCceEeCCCcccc
Q 030241 5 FCSD--CKKHTEVVFDHSAGDTVCSECGLVL 33 (181)
Q Consensus 5 ~Cp~--Cg~~~~iv~D~~~G~~vC~~CG~Vl 33 (181)
.||. |++ . +.+...|...|..||...
T Consensus 310 aC~~~~C~k--k-v~~~~~g~~~C~~C~~~~ 337 (444)
T 4gop_C 310 ACASEGCNK--K-VNLDHENNWRCEKCDRSY 337 (444)
T ss_dssp ECCSTTCCC--B-EEECTTSCEEETTTTEEE
T ss_pred cCCcccCCC--c-cccCCCccEECCCCCCcC
Confidence 5999 997 2 455678999999999875
No 132
>2au3_A DNA primase; zinc ribbon, toprim, RNA polymerase, DNA replication, transf; HET: DNA; 2.00A {Aquifex aeolicus}
Probab=51.58 E-value=9.6 Score=32.49 Aligned_cols=27 Identities=19% Similarity=0.285 Sum_probs=22.6
Q ss_pred CCCCCCCC-CceeEeCCCCceEeCCCcc
Q 030241 5 FCSDCKKH-TEVVFDHSAGDTVCSECGL 31 (181)
Q Consensus 5 ~Cp~Cg~~-~~iv~D~~~G~~vC~~CG~ 31 (181)
.||.|+.. +++.+++..|...|-.||.
T Consensus 36 ~CPfh~ektpSf~V~~~k~~~~CFgCg~ 63 (407)
T 2au3_A 36 NCPFHPDDTPSFYVSPSKQIFKCFGCGV 63 (407)
T ss_dssp CCSSSCCSSCCEEEETTTTEEEETTTCC
T ss_pred eCcCCCCCCCeEEEECCCCEEEECCCCC
Confidence 59999854 3588899999999999993
No 133
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=51.15 E-value=5.9 Score=21.55 Aligned_cols=13 Identities=31% Similarity=0.639 Sum_probs=11.0
Q ss_pred CCCceEeCCCccc
Q 030241 20 SAGDTVCSECGLV 32 (181)
Q Consensus 20 ~~G~~vC~~CG~V 32 (181)
..||.+|..||.+
T Consensus 2 k~gDW~C~~C~~~ 14 (32)
T 2lk0_A 2 KFEDWLCNKCCLN 14 (32)
T ss_dssp CCSEEECTTTCCE
T ss_pred CCCCCCcCcCcCC
Confidence 4689999999887
No 134
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=50.99 E-value=4 Score=29.85 Aligned_cols=22 Identities=18% Similarity=0.403 Sum_probs=18.0
Q ss_pred CceeEeCCCCceEeCCCccccc
Q 030241 13 TEVVFDHSAGDTVCSECGLVLE 34 (181)
Q Consensus 13 ~~iv~D~~~G~~vC~~CG~Vl~ 34 (181)
..+..+...+...|.+||...+
T Consensus 60 A~L~i~~~p~~~~C~~CG~~~~ 81 (139)
T 3a43_A 60 AEIEFVEEEAVFKCRNCNYEWK 81 (139)
T ss_dssp CEEEEEEECCEEEETTTCCEEE
T ss_pred CEEEEEecCCcEECCCCCCEEe
Confidence 3566777889999999999975
No 135
>3mao_A Methionine-R-sulfoxide reductase B1; oxidoreductase, structural genomics consortium, SGC, cytoplasm, metal-binding, nucleus, selenocysteine, zinc; HET: MLI; 1.42A {Homo sapiens}
Probab=50.62 E-value=5.9 Score=27.87 Aligned_cols=32 Identities=28% Similarity=0.628 Sum_probs=25.8
Q ss_pred CCCCceEeCCCccccc--cCCccccccccccccC
Q 030241 19 HSAGDTVCSECGLVLE--SHSIDETSEWRTFANE 50 (181)
Q Consensus 19 ~~~G~~vC~~CG~Vl~--e~~id~~~Ewr~F~~~ 50 (181)
.+.|.++|..||.-|= +.-+|+|.-|.+|.+.
T Consensus 9 ~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~p 42 (105)
T 3mao_A 9 FEPGVYVCAKCGYELFSSRSKYAHSSPWPAFTET 42 (105)
T ss_dssp CCSEEEEETTTCCEEEEGGGEECCSSSSCEESCC
T ss_pred CCCEEEEcCCCCCccccCCcccCCCCCChhhccc
Confidence 3689999999998874 4446888999999853
No 136
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=50.54 E-value=8.1 Score=24.28 Aligned_cols=24 Identities=21% Similarity=0.668 Sum_probs=15.0
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCccccc
Q 030241 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLE 34 (181)
Q Consensus 4 ~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~Vl~ 34 (181)
..||+||. . ..---+|.+||.-=+
T Consensus 31 ~~c~~cG~-~------~~pH~vc~~CG~Y~g 54 (60)
T 2zjr_Z 31 TECPQCHG-K------KLSHHICPNCGYYDG 54 (60)
T ss_dssp EECTTTCC-E------ECTTBCCTTTCBSSS
T ss_pred eECCCCCC-E------eCCceEcCCCCcCCC
Confidence 45888885 2 123478888886533
No 137
>2k8d_A Peptide methionine sulfoxide reductase MSRB; thermophilic, Zn binding, metal-binding, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=49.10 E-value=9.1 Score=28.61 Aligned_cols=32 Identities=28% Similarity=0.534 Sum_probs=26.2
Q ss_pred CCCCceEeCCCccccc--cCCccccccccccccC
Q 030241 19 HSAGDTVCSECGLVLE--SHSIDETSEWRTFANE 50 (181)
Q Consensus 19 ~~~G~~vC~~CG~Vl~--e~~id~~~Ewr~F~~~ 50 (181)
.+.|.++|..||.-|= +.-+|+|.-|.+|.+.
T Consensus 57 ~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~p 90 (151)
T 2k8d_A 57 HDDGIYRCICCGTDLFDSETKFDSGTGWPSFYDV 90 (151)
T ss_dssp CSCSEEEETTTTEEEEEGGGSCCSTTCCSEESCC
T ss_pred CCCEEEEecCCCCcccCCcccccCCCCCcccCcc
Confidence 4789999999998773 4557889999999854
No 138
>2riq_A Poly [ADP-ribose] polymerase 1; Zn-binding domain, Zn ribbon, Zn finger, ADP-ribosylation, D damage, DNA repair, DNA-binding, glycosyltransferase; 1.70A {Homo sapiens} PDB: 2jvn_A
Probab=49.03 E-value=11 Score=28.48 Aligned_cols=23 Identities=30% Similarity=0.723 Sum_probs=18.2
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCccc
Q 030241 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLV 32 (181)
Q Consensus 4 ~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~V 32 (181)
..||.|++ .++++. |.+.|+ |.+
T Consensus 79 ~~CP~C~G--~l~y~~--~~Y~C~--G~i 101 (160)
T 2riq_A 79 LPCEECSG--QLVFKS--DAYYCT--GDV 101 (160)
T ss_dssp CCCTTTCC--CEEEET--TEEEEC--CEE
T ss_pred CCCCCCCC--EEEEeC--CeEEEC--CCC
Confidence 46999994 688874 999998 555
No 139
>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}
Probab=48.85 E-value=7.2 Score=27.37 Aligned_cols=33 Identities=18% Similarity=0.474 Sum_probs=21.4
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCccccccC
Q 030241 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLESH 36 (181)
Q Consensus 4 ~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~Vl~e~ 36 (181)
..||.|+..+.+-.........|..||.-+-+.
T Consensus 6 ~~c~~c~~~n~~p~~~~~~~~~~~~~~~~~~~~ 38 (148)
T 3p2a_A 6 TVCTACMATNRLPEERIDDGAKCGRCGHSLFDG 38 (148)
T ss_dssp EECTTTCCEEEEESSCSCSCCBCTTTCCBTTCC
T ss_pred EECcccccccCCCCcccccCCcchhcCCccccC
Confidence 459999984333333345556799998876543
No 140
>2l1u_A MSRB2, methionine-R-sulfoxide reductase B2, mitochondria; methionine sulfoxide reductase, oxidoreductase; NMR {Mus musculus}
Probab=48.20 E-value=8.9 Score=28.40 Aligned_cols=32 Identities=19% Similarity=0.387 Sum_probs=25.9
Q ss_pred CCCCceEeCCCccccc--cCCccccccccccccC
Q 030241 19 HSAGDTVCSECGLVLE--SHSIDETSEWRTFANE 50 (181)
Q Consensus 19 ~~~G~~vC~~CG~Vl~--e~~id~~~Ewr~F~~~ 50 (181)
.+.|.++|..||.-|= +.-+|+|.-|.+|.+.
T Consensus 33 ~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~p 66 (143)
T 2l1u_A 33 KETGMYHCVCCDSPLFSSEKKYCSGTGWPSFSEA 66 (143)
T ss_dssp CCCEEEEESSSSCEEEEGGGBCTTTTCCSBBSSC
T ss_pred cCCeEEEeCCCCCeeecCcccccCCCCChhhchh
Confidence 4789999999998763 4557888999999754
No 141
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=47.47 E-value=7.6 Score=21.26 Aligned_cols=13 Identities=46% Similarity=0.731 Sum_probs=11.1
Q ss_pred CCCceEeCCCccc
Q 030241 20 SAGDTVCSECGLV 32 (181)
Q Consensus 20 ~~G~~vC~~CG~V 32 (181)
..||.+|..||.+
T Consensus 3 ~~gDW~C~~C~~~ 15 (33)
T 2k1p_A 3 SANDWQCKTCSNV 15 (33)
T ss_dssp SSSSCBCSSSCCB
T ss_pred CCCCcccCCCCCc
Confidence 4689999999877
No 142
>2j6a_A Protein TRM112; translation termination, methyltransferase, transferase, ERF1, nuclear protein, protein methylation; 1.7A {Saccharomyces cerevisiae}
Probab=47.22 E-value=3.4 Score=30.62 Aligned_cols=18 Identities=22% Similarity=0.634 Sum_probs=15.0
Q ss_pred eEeCCCCceEeCCCcccc
Q 030241 16 VFDHSAGDTVCSECGLVL 33 (181)
Q Consensus 16 v~D~~~G~~vC~~CG~Vl 33 (181)
.+|..+|.++|.+||...
T Consensus 102 e~~v~eg~L~C~~cg~~Y 119 (141)
T 2j6a_A 102 QTSIAEGEMKCRNCGHIY 119 (141)
T ss_dssp TEEEEEEEEECTTTCCEE
T ss_pred heeccCCEEECCCCCCcc
Confidence 355678999999999986
No 143
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=46.91 E-value=13 Score=23.76 Aligned_cols=29 Identities=28% Similarity=0.548 Sum_probs=20.3
Q ss_pred CCCCCCCCCCCCceeEeCCCCceEeCCCccccc
Q 030241 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLE 34 (181)
Q Consensus 2 ~~~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~Vl~ 34 (181)
+...|..|+.. |..-.-.--|..||.|+=
T Consensus 10 ~~~~C~~C~~~----F~~~~RrHHCR~CG~v~C 38 (73)
T 1vfy_A 10 DSDACMICSKK----FSLLNRKHHCRSCGGVFC 38 (73)
T ss_dssp CCSBCTTTCCB----CBTTBCCEECTTTCCEEC
T ss_pred cCCcccCCCCc----cCCccccccCCCCCEEEc
Confidence 34579999862 444556778888888874
No 144
>3e0o_A Peptide methionine sulfoxide reductase MSRB; oxidoreductase; 2.60A {Bacillus subtilis} SCOP: b.88.1.3 PDB: 1xm0_A 2kzn_A
Probab=46.84 E-value=9 Score=28.42 Aligned_cols=32 Identities=22% Similarity=0.308 Sum_probs=26.1
Q ss_pred CCCCceEeCCCccccc--cCCccccccccccccC
Q 030241 19 HSAGDTVCSECGLVLE--SHSIDETSEWRTFANE 50 (181)
Q Consensus 19 ~~~G~~vC~~CG~Vl~--e~~id~~~Ewr~F~~~ 50 (181)
.+.|.++|..||.-|= +.-+|+|.-|.+|.+.
T Consensus 38 ~~~G~Y~C~~Cg~pLF~S~~KfdSg~GWPSF~~p 71 (144)
T 3e0o_A 38 KEEGLYVDIVSGKPLFTSKDKFDSQCGWPSFTKP 71 (144)
T ss_dssp CCSEEEEETTTCCEEEETTTBCCCTTSSCEESCC
T ss_pred CCCEEEEeCCCCcccccCcccccCCCCCcccCch
Confidence 4789999999998874 4456889999999853
No 145
>2f9i_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus}
Probab=46.37 E-value=3.9 Score=33.56 Aligned_cols=40 Identities=28% Similarity=0.623 Sum_probs=26.7
Q ss_pred CCCCCCCCCCceeEeC--CCCceEeCCCcc--------ccccCCccccccccccc
Q 030241 4 AFCSDCKKHTEVVFDH--SAGDTVCSECGL--------VLESHSIDETSEWRTFA 48 (181)
Q Consensus 4 ~~Cp~Cg~~~~iv~D~--~~G~~vC~~CG~--------Vl~e~~id~~~Ewr~F~ 48 (181)
.+||+|+. .+++. +....||..|+. +| +.++|.++ |..+.
T Consensus 31 ~kc~~~~~---~~y~~~l~~~~~v~p~~~~~~r~~arerI-~~L~D~gs-F~El~ 80 (285)
T 2f9i_B 31 TKCPKCKK---IMYTKELAENLNVCFNCDHHIALTAYKRI-EAISDEGS-FTEFD 80 (285)
T ss_dssp EECTTTCC---EEEHHHHHHTTTBCTTTCCBCCCCHHHHH-HHTSCTTC-CEEES
T ss_pred HhhHhhCC---ccchhhhHHhcCcCCCCCCCCCCCHHHHH-HHHccCCC-cEEEC
Confidence 47999996 34553 566789999999 33 45677653 44443
No 146
>3fia_A Intersectin-1; EH 1 domain, NESG, structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 1.45A {Homo sapiens} PDB: 2khn_A
Probab=46.11 E-value=28 Score=24.73 Aligned_cols=59 Identities=14% Similarity=0.117 Sum_probs=39.9
Q ss_pred HHHHHHHHhCCchHHHHHHHHHHHH-hh---hCHHHHHHHHHHHHHHhCCCCccccChhhheec
Q 030241 111 TIATMSDRIGQMRYIRRWKIKSLVE-AE---IKTHYWLLACTLLVDKKTSHALLRVQPKILLTS 170 (181)
Q Consensus 111 ~I~~ia~~L~Lp~~v~e~~i~k~a~-~~---l~~~~v~AAclYiACR~~~~p~t~~~~~~~~~~ 170 (181)
++..+-.+++||..+.+ +|+..+. ++ |..+..+.|.-.+.++++|.|+...=|..|..|
T Consensus 53 elr~~~~~sgLp~~~L~-~Iw~laD~d~dG~Ld~~EF~~aM~Li~~~~~G~~lP~~LP~~l~~~ 115 (121)
T 3fia_A 53 QARNFFFQSGLPQPVLA-QIWALADMNNDGRMDQVEFSIAMKLIKLKLQGYQLPSALPPVMKQQ 115 (121)
T ss_dssp HHHHHHGGGCCCHHHHH-HHHHHHCTTCSSEECHHHHHHHHHHHHHHHTTCCCCSSCCGGGC--
T ss_pred HHHHHHHHcCCCHHHHH-HHHHHHcCCCCCcCCHHHHHHHHHHHHHHHcCCCCCCCCCHHHHcC
Confidence 34444456799855432 6777774 33 589999999999999999999985444444443
No 147
>3hcj_A MSRB, peptide methionine sulfoxide reductase; methionine sulfoxide reductase B, oxidized form, oxidoreductase; 1.66A {Xanthomonas campestris PV} PDB: 3hci_A*
Probab=46.05 E-value=8.4 Score=28.90 Aligned_cols=33 Identities=27% Similarity=0.561 Sum_probs=26.6
Q ss_pred eCCCCceEeCCCccccc--cCCccccccccccccC
Q 030241 18 DHSAGDTVCSECGLVLE--SHSIDETSEWRTFANE 50 (181)
Q Consensus 18 D~~~G~~vC~~CG~Vl~--e~~id~~~Ewr~F~~~ 50 (181)
..+.|.++|..||.-|= +.-+|+|.-|.+|.+.
T Consensus 45 ~~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~p 79 (154)
T 3hcj_A 45 NKLDGVYTCRLCGLPLFRSNAKFDSGTGWPSFFAP 79 (154)
T ss_dssp SCSSEEEEETTTCCEEEEECTTCCCCTTSSTTEEE
T ss_pred CCCCEEEEccCCCCccccCcccccCCCCCcccccc
Confidence 34789999999998773 5557888999999753
No 148
>3cxk_A Methionine-R-sulfoxide reductase; structural genomics, MSRB, oxidoreductase, MIC labcard, PSI-2, protein structure initiative; 1.70A {Burkholderia pseudomallei strain} PDB: 3cez_A
Probab=45.99 E-value=8.6 Score=29.12 Aligned_cols=32 Identities=22% Similarity=0.454 Sum_probs=25.9
Q ss_pred CCCCceEeCCCccccc--cCCccccccccccccC
Q 030241 19 HSAGDTVCSECGLVLE--SHSIDETSEWRTFANE 50 (181)
Q Consensus 19 ~~~G~~vC~~CG~Vl~--e~~id~~~Ewr~F~~~ 50 (181)
.+.|.++|..||.-|= +.-+|+|.-|.+|.+.
T Consensus 69 ~~~GiY~C~~Cg~pLF~S~~KFdSGcGWPSF~~p 102 (164)
T 3cxk_A 69 EDAGIYHCVVCGTALFESGAKYHSGCGWPSYFKP 102 (164)
T ss_dssp CCSEEEEETTTCCEEEEGGGBCCCCSSSCEESSC
T ss_pred CCCeEEEccCCCccccCCchhccCCCCCcccCcc
Confidence 4689999999998774 4456889999999864
No 149
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.67 E-value=15 Score=23.95 Aligned_cols=19 Identities=11% Similarity=0.078 Sum_probs=16.6
Q ss_pred HHHHHHHHHhCCchHHHHH
Q 030241 110 KTIATMSDRIGQMRYIRRW 128 (181)
Q Consensus 110 ~~I~~ia~~L~Lp~~v~e~ 128 (181)
.+|..||..+|||..|+.-
T Consensus 33 eei~~LA~~lgL~~~VVrV 51 (71)
T 2da7_A 33 DELLKISIAVGLPQEFVKE 51 (71)
T ss_dssp HHHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHH
Confidence 4799999999999998765
No 150
>3irb_A Uncharacterized protein from DUF35 family; 13815350, protein with unknown function from DUF35 family, S genomics; 1.80A {Sulfolobus solfataricus}
Probab=45.43 E-value=9 Score=28.09 Aligned_cols=23 Identities=22% Similarity=0.660 Sum_probs=16.2
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCccc
Q 030241 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLV 32 (181)
Q Consensus 4 ~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~V 32 (181)
++|+.||. +.+-+ ..+|..||--
T Consensus 48 ~rC~~CG~---~~~PP---r~~Cp~C~s~ 70 (145)
T 3irb_A 48 SKCSKCGR---IFVPA---RSYCEHCFVK 70 (145)
T ss_dssp EECTTTCC---EEESC---CSEETTTTEE
T ss_pred EEeCCCCc---EEcCc---hhhCcCCCCC
Confidence 57999996 33433 3689999863
No 151
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=44.56 E-value=10 Score=29.57 Aligned_cols=28 Identities=14% Similarity=0.310 Sum_probs=20.1
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCccccc
Q 030241 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLE 34 (181)
Q Consensus 4 ~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~Vl~ 34 (181)
..|++|+. .. ........+|..||.+..
T Consensus 11 ~~Cw~C~~-~~--~~~~~~~~fC~~c~~~q~ 38 (207)
T 3bvo_A 11 PRCWNCGG-PW--GPGREDRFFCPQCRALQA 38 (207)
T ss_dssp CBCSSSCC-BC--CSSCSCCCBCTTTCCBCC
T ss_pred CCCCCCCC-Cc--ccccccccccccccccCC
Confidence 57999996 21 112457899999998874
No 152
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=44.16 E-value=16 Score=28.22 Aligned_cols=28 Identities=25% Similarity=0.548 Sum_probs=21.3
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCcccc
Q 030241 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVL 33 (181)
Q Consensus 4 ~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~Vl 33 (181)
..||.||. ..+...+.. -.-|..||+..
T Consensus 114 ~~Cp~Cg~-g~fma~h~d-R~~CGkC~~t~ 141 (189)
T 2xzm_9 114 KGCPKCGP-GIFMAKHYD-RHYCGKCHLTL 141 (189)
T ss_dssp EECSTTCS-SCEEEECSS-CEEETTTCCCB
T ss_pred ccCCccCC-CccccCccC-CCccCCceeEE
Confidence 46999995 556666665 45999999986
No 153
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=43.71 E-value=7.6 Score=28.56 Aligned_cols=30 Identities=27% Similarity=0.617 Sum_probs=19.6
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCcccc
Q 030241 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVL 33 (181)
Q Consensus 4 ~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~Vl 33 (181)
..|-+||...+--....-|-.+|.+|.-|-
T Consensus 26 ~~CaDCg~~~P~WaS~n~GvfiC~~CsgiH 55 (140)
T 2olm_A 26 RKCFDCDQRGPTYVNMTVGSFVCTSCSGSL 55 (140)
T ss_dssp GSCTTTCSSCCCEEETTTTEEECHHHHHHH
T ss_pred CcCCCCCCCCCCceeeccCEEEchhccchh
Confidence 458888874333344567888888887664
No 154
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}
Probab=42.93 E-value=7.1 Score=28.51 Aligned_cols=30 Identities=23% Similarity=0.583 Sum_probs=19.6
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCcccc
Q 030241 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVL 33 (181)
Q Consensus 4 ~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~Vl 33 (181)
..|-+||...+--....-|-.+|.+|.-|-
T Consensus 28 ~~CaDCg~~~P~WaS~n~GvfiC~~CsgiH 57 (134)
T 2iqj_A 28 KFCADCQSKGPRWASWNIGVFICIRCAGIH 57 (134)
T ss_dssp GBCTTTCCBSCCEEETTTTEEECHHHHHHH
T ss_pred CcCCcCcCCCCCeEEecCCEEEhHhhhHHH
Confidence 358888874333344567888888887664
No 155
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}
Probab=42.92 E-value=8.4 Score=28.28 Aligned_cols=30 Identities=20% Similarity=0.398 Sum_probs=18.0
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCcccc
Q 030241 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVL 33 (181)
Q Consensus 4 ~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~Vl 33 (181)
..|-+||...+--....-|-.+|.+|.-|-
T Consensus 37 ~~CaDCga~~P~WaS~n~GvfiC~~CsgiH 66 (138)
T 2owa_A 37 RTCFDCESRNPTWLSLSFAVFICLNCSSDH 66 (138)
T ss_dssp GBCTTTCCBSCCEEETTTTEEECHHHHHHH
T ss_pred CcCCCCcCCCCCeEEecCCEEEhHhhhHHH
Confidence 357777764333344466777777776663
No 156
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens}
Probab=42.88 E-value=7.4 Score=28.96 Aligned_cols=30 Identities=20% Similarity=0.378 Sum_probs=20.7
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCcccc
Q 030241 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVL 33 (181)
Q Consensus 4 ~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~Vl 33 (181)
..|-+||...+--....-|-.+|.+|.-|-
T Consensus 39 ~~CaDCga~~P~WaS~nlGvfiC~~CSgiH 68 (147)
T 3dwd_A 39 NVCFECGAFNPQWVSVTYGIWICLECSGRH 68 (147)
T ss_dssp TBCTTTCCBSCCEEETTTTEEECHHHHHHH
T ss_pred CccCCCCCCCCCeEEecccEeEhHhhChHH
Confidence 468888874444445577888888887664
No 157
>3hcg_A Peptide methionine sulfoxide reductase MSRA/MSRB; PILB, methionine sulfoxide reductase B, reduced form, disulfide bond; 1.82A {Neisseria meningitidis serogroup A} SCOP: b.88.1.3 PDB: 3hch_A* 1l1d_A
Probab=42.67 E-value=9 Score=28.47 Aligned_cols=32 Identities=22% Similarity=0.282 Sum_probs=25.9
Q ss_pred CCCCceEeCCCccccc--cCCccccccccccccC
Q 030241 19 HSAGDTVCSECGLVLE--SHSIDETSEWRTFANE 50 (181)
Q Consensus 19 ~~~G~~vC~~CG~Vl~--e~~id~~~Ewr~F~~~ 50 (181)
.+.|.++|..||.-|= +.-+|+|.-|.+|.+.
T Consensus 39 ~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~p 72 (146)
T 3hcg_A 39 FKPGIYVDVVSGEPLFSSADKYDSGCGWPSFTRP 72 (146)
T ss_dssp CCSEEEEETTTCCEEEEGGGEECCSSSSCEESSC
T ss_pred CCCEEEEecCCCcccccCcccccCCCCChhhccc
Confidence 4789999999998874 4446888999999853
No 158
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=41.97 E-value=31 Score=22.61 Aligned_cols=27 Identities=19% Similarity=0.190 Sum_probs=22.6
Q ss_pred HHHHHHHHhCCchHHHHHHHHHHHHhh
Q 030241 111 TIATMSDRIGQMRYIRRWKIKSLVEAE 137 (181)
Q Consensus 111 ~I~~ia~~L~Lp~~v~e~~i~k~a~~~ 137 (181)
...+||..||++...+.+.||++..++
T Consensus 29 t~~eLA~~Lgvsr~tV~~~L~~Le~~G 55 (81)
T 1qbj_A 29 TAHDLSGKLGTPKKEINRVLYSLAKKG 55 (81)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 456899999999988888888887766
No 159
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=40.43 E-value=37 Score=21.78 Aligned_cols=27 Identities=19% Similarity=0.190 Sum_probs=22.1
Q ss_pred HHHHHHHHhCCchHHHHHHHHHHHHhh
Q 030241 111 TIATMSDRIGQMRYIRRWKIKSLVEAE 137 (181)
Q Consensus 111 ~I~~ia~~L~Lp~~v~e~~i~k~a~~~ 137 (181)
...+||..||++...+.+.++++-.++
T Consensus 33 t~~eLA~~Lgvs~~tV~~~L~~L~~~G 59 (77)
T 1qgp_A 33 TAHDLSGKLGTPKKEINRVLYSLAKKG 59 (77)
T ss_dssp EHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 457899999999988887888877665
No 160
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens}
Probab=39.95 E-value=6.5 Score=29.16 Aligned_cols=30 Identities=23% Similarity=0.420 Sum_probs=18.6
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCcccc
Q 030241 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVL 33 (181)
Q Consensus 4 ~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~Vl 33 (181)
..|-+||...+--....-|-.+|.+|.-|-
T Consensus 38 ~~CaDCga~~P~WaS~n~GvfiC~~CsgiH 67 (144)
T 2p57_A 38 KACFDCGAKNPSWASITYGVFLCIDCSGVH 67 (144)
T ss_dssp GBCTTTCCBSCCEEEGGGTEEECHHHHHHH
T ss_pred CcCCCCcCCCCCeEEeccCEEEhhhchHHH
Confidence 357778764333344466777777777663
No 161
>2l8e_A Polyhomeotic-like protein 1; DNA binding protein; NMR {Homo sapiens}
Probab=39.55 E-value=8.8 Score=23.15 Aligned_cols=21 Identities=24% Similarity=0.379 Sum_probs=15.9
Q ss_pred ceeEeCCCCceEeCCCccccc
Q 030241 14 EVVFDHSAGDTVCSECGLVLE 34 (181)
Q Consensus 14 ~iv~D~~~G~~vC~~CG~Vl~ 34 (181)
++..|...+..+|..||..+.
T Consensus 9 ~~~~~~~~~~~~C~~CG~~i~ 29 (49)
T 2l8e_A 9 SAELDKKANLLKCEYCGKYAP 29 (49)
T ss_dssp TGGGGGGCSEEECTTTCCEEE
T ss_pred cccccccCCCCcChhccCccc
Confidence 455566677788999999875
No 162
>2gnr_A Conserved hypothetical protein; 13815350, structural genomics, PSI, protein structure initiative; 1.80A {Sulfolobus solfataricus P2} PDB: 3irb_A
Probab=39.11 E-value=14 Score=27.11 Aligned_cols=23 Identities=22% Similarity=0.661 Sum_probs=16.3
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCccc
Q 030241 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLV 32 (181)
Q Consensus 4 ~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~V 32 (181)
.+|+.||. +.+-+. .+|..||.-
T Consensus 48 ~rC~~CG~---~~fPPr---~~Cp~C~s~ 70 (145)
T 2gnr_A 48 SKCSKCGR---IFVPAR---SYCEHCFVK 70 (145)
T ss_dssp EECTTTCC---EEESCC---SEETTTTEE
T ss_pred EEECCCCc---EEeCCC---CCCCCCCCC
Confidence 57999996 334332 589999865
No 163
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=39.10 E-value=37 Score=22.03 Aligned_cols=17 Identities=18% Similarity=0.049 Sum_probs=14.6
Q ss_pred HHHHHHHhCCchHHHHH
Q 030241 112 IATMSDRIGQMRYIRRW 128 (181)
Q Consensus 112 I~~ia~~L~Lp~~v~e~ 128 (181)
+++++..||||..++--
T Consensus 38 r~~La~~tGL~~~~IqV 54 (71)
T 1wi3_A 38 IHTLSAQLDLPKHTIIK 54 (71)
T ss_dssp HHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHhCCCHHHHHH
Confidence 89999999999987654
No 164
>1vq8_1 50S ribosomal protein L37E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.2 PDB: 1vq4_1* 1vq5_1* 1vq6_1* 1vq7_1* 1s72_1* 1vq9_1* 1vqk_1* 1vql_1* 1vqm_1* 1vqn_1* 1vqo_1* 1vqp_1* 1yhq_1* 1yi2_1* 1yij_1* 1yit_1* 1yj9_1* 1yjn_1* 1yjw_1* 2otj_1* ...
Probab=38.77 E-value=15 Score=22.93 Aligned_cols=23 Identities=30% Similarity=0.915 Sum_probs=15.9
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCcc
Q 030241 4 AFCSDCKKHTEVVFDHSAGDTVCSECGL 31 (181)
Q Consensus 4 ~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~ 31 (181)
..|..||+ .. +. --..+|..||+
T Consensus 18 ~~CrRCG~-~s--yH--~qK~~Ca~CGy 40 (57)
T 1vq8_1 18 TKCRRCGE-KS--YH--TKKKVCSSCGF 40 (57)
T ss_dssp EECTTTCS-EE--EE--TTTTEETTTCT
T ss_pred ccccccCC-hh--hh--ccccccccccC
Confidence 45999997 33 23 23678999997
No 165
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=38.33 E-value=10 Score=27.05 Aligned_cols=12 Identities=42% Similarity=0.819 Sum_probs=10.7
Q ss_pred ceEeCCCccccc
Q 030241 23 DTVCSECGLVLE 34 (181)
Q Consensus 23 ~~vC~~CG~Vl~ 34 (181)
-.+|..||.|++
T Consensus 91 HliC~~Cg~v~~ 102 (136)
T 1mzb_A 91 HMVCVDTGEVIE 102 (136)
T ss_dssp EEEETTTCCEEE
T ss_pred EEEECCCCCEEE
Confidence 489999999986
No 166
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.21 E-value=8.2 Score=28.40 Aligned_cols=30 Identities=20% Similarity=0.553 Sum_probs=18.6
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCcccc
Q 030241 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVL 33 (181)
Q Consensus 4 ~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~Vl 33 (181)
..|-+||...+--....-|-.+|.+|.-|-
T Consensus 30 ~~CaDCga~~P~WaS~n~GvfiC~~CsgiH 59 (141)
T 2crr_A 30 KYCADCEAKGPRWASWNIGVFICIRCAGIH 59 (141)
T ss_dssp SSCSSSCCSSCCSEETTTTEECCHHHHHHH
T ss_pred CcCCCCCCCCCCeEEeccCeEEhhhhhHhH
Confidence 357778764332344467777777776663
No 167
>1ptq_A Protein kinase C delta type; phosphotransferase; 1.95A {Mus musculus} SCOP: g.49.1.1 PDB: 1ptr_A*
Probab=37.95 E-value=24 Score=20.39 Aligned_cols=31 Identities=19% Similarity=0.715 Sum_probs=19.8
Q ss_pred CCCCCCCCCCCCceeEeCCCCceEeCCCcccccc
Q 030241 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLES 35 (181)
Q Consensus 2 ~~~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~Vl~e 35 (181)
.+..|..|++ ++.-...--+.|.+|++++-.
T Consensus 10 ~pt~C~~C~~---~l~g~~~qg~~C~~C~~~~H~ 40 (50)
T 1ptq_A 10 SPTFCDHCGS---LLWGLVKQGLKCEDCGMNVHH 40 (50)
T ss_dssp SCCBCTTTCC---BCCSSSSCEEEETTTCCEECH
T ss_pred CCCCcCCCCc---eeeccCCccCEeCCCCCeECH
Confidence 3577999986 233222233779999988643
No 168
>1y07_A Desulfoferrodoxin (RBO); beta-sheet, iron binding, oxidoreductase; 1.55A {Treponema pallidum subsp}
Probab=37.22 E-value=12 Score=26.97 Aligned_cols=27 Identities=11% Similarity=0.094 Sum_probs=13.8
Q ss_pred CCCCC-CCCCCceeEe--CCCCceEeCCCcccccc
Q 030241 4 AFCSD-CKKHTEVVFD--HSAGDTVCSECGLVLES 35 (181)
Q Consensus 4 ~~Cp~-Cg~~~~iv~D--~~~G~~vC~~CG~Vl~e 35 (181)
.+|+. ||. +++= ...|.++| ||.-+++
T Consensus 8 YkC~~~CGn---ivev~~~g~~~l~C--CG~~m~~ 37 (128)
T 1y07_A 8 FLQKESAGF---FLGMDAPAGSSVAC--GSEVLRA 37 (128)
T ss_dssp ECC-----C---EEEESCCTTCEEEE--TTEEEEC
T ss_pred EECCCCCCC---EEEEEcCCCcceee--cCccccc
Confidence 46999 996 3332 45566777 8876643
No 169
>3j21_e 50S ribosomal protein L37E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=37.17 E-value=15 Score=23.28 Aligned_cols=24 Identities=21% Similarity=0.805 Sum_probs=16.4
Q ss_pred CCCCCCCCCCCceeEeCCCCceEeCCCcc
Q 030241 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGL 31 (181)
Q Consensus 3 ~~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~ 31 (181)
...|..||+ .. +. --.-.|..||+
T Consensus 17 H~lCrRCG~-~s--yH--~qK~~Ca~CGy 40 (62)
T 3j21_e 17 HIRCRRCGR-VS--YN--VKKGYCAACGF 40 (62)
T ss_dssp CCBCSSSCS-BC--EE--TTTTEETTTCT
T ss_pred eeeecccCc-ch--hc--cccccccccCC
Confidence 456999997 33 22 23578999997
No 170
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=36.49 E-value=25 Score=24.55 Aligned_cols=25 Identities=28% Similarity=0.520 Sum_probs=17.7
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCccccccC
Q 030241 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLESH 36 (181)
Q Consensus 4 ~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~Vl~e~ 36 (181)
..|.+|++. .+-.+|..||.|-=.+
T Consensus 25 ~~C~~C~~~--------~~~W~CL~CG~vgCgr 49 (109)
T 3c5k_A 25 QPCGDCGTI--------QENWVCLSCYQVYCGR 49 (109)
T ss_dssp CCCTTTCCC--------SSEEEETTTCCEEECT
T ss_pred CcCccccCC--------CCeeeeeecCccccCC
Confidence 458888862 2357899999997443
No 171
>2enz_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=36.28 E-value=30 Score=21.38 Aligned_cols=34 Identities=18% Similarity=0.633 Sum_probs=21.8
Q ss_pred CCCCCCCCCCCCceeEeCCCCceEeCCCccccccCCc
Q 030241 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSI 38 (181)
Q Consensus 2 ~~~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~Vl~e~~i 38 (181)
.+..|..|++ ++.-...--+.|.+|++++-.+-.
T Consensus 22 ~pt~C~~C~~---~l~Gl~~qg~~C~~C~~~~Hk~C~ 55 (65)
T 2enz_A 22 SPTFCEHCGT---LLWGLARQGLKCDACGMNVHHRCQ 55 (65)
T ss_dssp SCCBCSSSCC---BCCCSSSCSEEESSSCCEECTTTT
T ss_pred CCcCchhcCh---hheecCCcccccCCCCCccCHhHH
Confidence 3577999986 233222233779999998765543
No 172
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=36.23 E-value=43 Score=22.18 Aligned_cols=27 Identities=11% Similarity=0.096 Sum_probs=23.5
Q ss_pred HHHHHHHHhCCchHHHHHHHHHHHHhh
Q 030241 111 TIATMSDRIGQMRYIRRWKIKSLVEAE 137 (181)
Q Consensus 111 ~I~~ia~~L~Lp~~v~e~~i~k~a~~~ 137 (181)
...+||..||++...+.+.+|++..++
T Consensus 32 sa~eLAk~LgiSk~aVr~~L~~Le~eG 58 (82)
T 1oyi_A 32 TAAQLTRQLNMEKREVNKALYDLQRSA 58 (82)
T ss_dssp EHHHHHHHSSSCHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 567899999999988888899988777
No 173
>2wb0_X E2A DNA-binding protein; ssDNA binding protein; 1.95A {Human adenovirus 5} PDB: 1adv_A 1adu_A 1anv_A 1adt_A 2waz_X
Probab=36.06 E-value=52 Score=27.79 Aligned_cols=58 Identities=12% Similarity=0.104 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHhCCchHHHHH--------HHHHHHHhhhCHHHHHHHHHHHHHHhCCCCcc-ccChhhheecccce
Q 030241 106 ILAFKTIATMSDRIGQMRYIRRW--------KIKSLVEAEIKTHYWLLACTLLVDKKTSHALL-RVQPKILLTSGCFL 174 (181)
Q Consensus 106 ~~a~~~I~~ia~~L~Lp~~v~e~--------~i~k~a~~~l~~~~v~AAclYiACR~~~~p~t-~~~~~~~~~~~~~~ 174 (181)
++|+..+..+++.|++....... ++|+++... |+-=+..+.||| +-+|....+-|+||
T Consensus 9 qkame~~~~l~~~~kvd~~~~~~~~~lPd~~e~~~Ki~~~-----------~l~~~~~~~~LTfSs~KSf~~~mGRfL 75 (356)
T 2wb0_X 9 EKGMEAARALMDKYHVDNDLKANFKLLPDQVEALAAVCKT-----------WLNEEHRGLQLTFTSNKTFVTMMGRFL 75 (356)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHCCCCTTCCHHHHHHHHH-----------HHHHHCTTCCCSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHeecCcccccCcEECCCcHHHHHHHHHH-----------HHhhcCCCCceeeecHHHHHHHHHHHH
Confidence 56899999999999998544333 677665442 444445566666 66666666666665
No 174
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=35.94 E-value=12 Score=27.08 Aligned_cols=12 Identities=25% Similarity=1.118 Sum_probs=10.7
Q ss_pred ceEeCCCccccc
Q 030241 23 DTVCSECGLVLE 34 (181)
Q Consensus 23 ~~vC~~CG~Vl~ 34 (181)
-.+|..||.|++
T Consensus 93 HliC~~Cg~v~~ 104 (145)
T 2fe3_A 93 HAICENCGKIVD 104 (145)
T ss_dssp EEEETTTCCEEE
T ss_pred eEEECCCCCEEE
Confidence 489999999986
No 175
>1kbe_A Kinase suppressor of RAS; KSR, cysteine-rich domain, zinc- binding protein, signaling protein; NMR {Mus musculus} SCOP: g.49.1.1 PDB: 1kbf_A
Probab=35.93 E-value=17 Score=21.66 Aligned_cols=24 Identities=29% Similarity=0.760 Sum_probs=18.0
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCccccc
Q 030241 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLE 34 (181)
Q Consensus 4 ~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~Vl~ 34 (181)
..|..|++ .| + .| +-|.+|++..-
T Consensus 15 t~C~~C~k--~i-~---~G-~kC~~Ck~~cH 38 (49)
T 1kbe_A 15 QVCNVCQK--SM-I---FG-VKCKHCRLKCH 38 (49)
T ss_dssp CCCSSSCC--SS-C---CE-EEETTTTEEES
T ss_pred cCccccCc--ee-E---Cc-CCCCCCCCccc
Confidence 67999986 23 3 46 78999998753
No 176
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.90 E-value=10 Score=28.21 Aligned_cols=29 Identities=21% Similarity=0.433 Sum_probs=15.7
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCccc
Q 030241 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLV 32 (181)
Q Consensus 4 ~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~V 32 (181)
..|-+||...+--....-|-.+|.+|.-|
T Consensus 30 ~~CaDCga~~P~WaS~n~GvfiC~~Csgi 58 (149)
T 2crw_A 30 KVCFDCGAKNPSWASITYGVFLCIDCSGS 58 (149)
T ss_dssp SBCSSSCCBSCCCEETTTTEECCHHHHHH
T ss_pred CcCCCCcCCCCCcEEeccCEEEchhcchh
Confidence 35666665322223335566666666655
No 177
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=34.62 E-value=21 Score=21.33 Aligned_cols=33 Identities=21% Similarity=0.300 Sum_probs=13.9
Q ss_pred CCCCCCCCCCCCCceeEeCCCCceEeCCCcccc
Q 030241 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVL 33 (181)
Q Consensus 1 m~~~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~Vl 33 (181)
|...+|-.||..-+..+=..--.+-|.-||.=+
T Consensus 1 ~~iY~C~rCg~~fs~~el~~lP~IrCpyCGyri 33 (48)
T 4ayb_P 1 MAVYRCGKCWKTFTDEQLKVLPGVRCPYCGYKI 33 (48)
T ss_dssp ----CCCCTTTTCCCCCSCCCSSSCCTTTCCSC
T ss_pred CcEEEeeccCCCccHHHHhhCCCcccCccCcEE
Confidence 445667777752110000122345677777643
No 178
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=34.17 E-value=17 Score=22.61 Aligned_cols=28 Identities=21% Similarity=0.543 Sum_probs=20.7
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCC--Ccccc
Q 030241 4 AFCSDCKKHTEVVFDHSAGDTVCSE--CGLVL 33 (181)
Q Consensus 4 ~~Cp~Cg~~~~iv~D~~~G~~vC~~--CG~Vl 33 (181)
..||.|+. .|..+..=..+.|.. ||.-.
T Consensus 7 k~CP~C~~--~Iek~~GCnhmtC~~~~C~~~F 36 (60)
T 1wd2_A 7 KECPKCHV--TIEKDGGCNHMVCRNQNCKAEF 36 (60)
T ss_dssp CCCTTTCC--CCSSCCSCCSSSCCSSGGGSCC
T ss_pred eECcCCCC--eeEeCCCCCcEEECCCCcCCEE
Confidence 57999996 466676667788887 87554
No 179
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=33.88 E-value=22 Score=32.70 Aligned_cols=23 Identities=35% Similarity=0.813 Sum_probs=13.9
Q ss_pred CCCCCCCCCceeEeCCCCceEeCCCccccc
Q 030241 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLE 34 (181)
Q Consensus 5 ~Cp~Cg~~~~iv~D~~~G~~vC~~CG~Vl~ 34 (181)
.||.||. . ...|+. |..||.+++
T Consensus 142 tcP~c~~-~-----~~~Gd~-c~~~G~~l~ 164 (722)
T 1rqg_A 142 TCPYCGA-E-----DQKGDQ-CEVCGRPLT 164 (722)
T ss_dssp BCSSSCC-S-----CCCTTT-CSSSCCCCC
T ss_pred ccCccCC-c-----cCCcch-hhhcccccC
Confidence 4888875 1 235653 667777664
No 180
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=33.84 E-value=22 Score=32.08 Aligned_cols=35 Identities=17% Similarity=0.356 Sum_probs=25.2
Q ss_pred CCCCCCCCCCCceeEeCCCCceEeCC---CccccccCCcc
Q 030241 3 DAFCSDCKKHTEVVFDHSAGDTVCSE---CGLVLESHSID 39 (181)
Q Consensus 3 ~~~Cp~Cg~~~~iv~D~~~G~~vC~~---CG~Vl~e~~id 39 (181)
+..||.||+ .++.....-...|++ |-.-+.++++-
T Consensus 405 P~~CP~Cgs--~~~~~~~~~~~rC~n~~~Cpaq~~~~l~h 442 (586)
T 4glx_A 405 PTHCPVCGS--DVERVEGEAVARCTGGLICGAQRKESLKH 442 (586)
T ss_dssp CSBCTTTCC--BEECCTTCSCCEESCGGGCHHHHHHHHHH
T ss_pred CCcCCCCCC--chhhhhcccccEeCCCcCcHHHHHhHHHh
Confidence 467999997 466665666788985 88777666643
No 181
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=33.62 E-value=14 Score=21.96 Aligned_cols=31 Identities=26% Similarity=0.493 Sum_probs=18.7
Q ss_pred CCCCCCCCCC----ce-eEeCCCCceEeCCCccccc
Q 030241 4 AFCSDCKKHT----EV-VFDHSAGDTVCSECGLVLE 34 (181)
Q Consensus 4 ~~Cp~Cg~~~----~i-v~D~~~G~~vC~~CG~Vl~ 34 (181)
..|+.||..- .+ ..........|..||..+.
T Consensus 15 ~~C~~C~k~F~~~~~l~~~H~~~k~~~C~~C~k~f~ 50 (62)
T 1vd4_A 15 FKCPVCSSTFTDLEANQLFDPMTGTFRCTFCHTEVE 50 (62)
T ss_dssp EECSSSCCEEEHHHHHHHEETTTTEEBCSSSCCBCE
T ss_pred ccCCCCCchhccHHHhHhhcCCCCCEECCCCCCccc
Confidence 3589998510 00 1233455688999998764
No 182
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=33.45 E-value=13 Score=26.97 Aligned_cols=13 Identities=31% Similarity=0.981 Sum_probs=11.1
Q ss_pred CceEeCCCccccc
Q 030241 22 GDTVCSECGLVLE 34 (181)
Q Consensus 22 G~~vC~~CG~Vl~ 34 (181)
.-.+|..||.|++
T Consensus 98 ~HliC~~Cg~v~~ 110 (150)
T 2xig_A 98 DHIICLHCGKIIE 110 (150)
T ss_dssp EEEEETTTCCEEE
T ss_pred eEEEECCCCCEEE
Confidence 3589999999986
No 183
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=33.26 E-value=27 Score=22.82 Aligned_cols=29 Identities=28% Similarity=0.738 Sum_probs=19.7
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCccccccC
Q 030241 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLESH 36 (181)
Q Consensus 4 ~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~Vl~e~ 36 (181)
..|..|+.. |..-.-.--|..||.|+=..
T Consensus 20 ~~C~~C~~~----Fs~~~RrHHCR~CG~v~C~~ 48 (82)
T 2yw8_A 20 THCRQCEKE----FSISRRKHHCRNCGHIFCNT 48 (82)
T ss_dssp CBCTTTCCB----CBTTBCCEECTTTCCEECSG
T ss_pred CcccCcCCc----ccCccccccCCCCCCEEChH
Confidence 468999862 44455667888888887543
No 184
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=33.19 E-value=27 Score=32.13 Aligned_cols=35 Identities=17% Similarity=0.356 Sum_probs=24.5
Q ss_pred CCCCCCCCCCCceeEeCCCCceEeCC---CccccccCCcc
Q 030241 3 DAFCSDCKKHTEVVFDHSAGDTVCSE---CGLVLESHSID 39 (181)
Q Consensus 3 ~~~Cp~Cg~~~~iv~D~~~G~~vC~~---CG~Vl~e~~id 39 (181)
+..||.||+ .++.....-.+.|.+ |---+.++++-
T Consensus 405 P~~CP~Cgs--~l~~~~~~~~~rC~n~~~Cpaq~~~~l~h 442 (671)
T 2owo_A 405 PTHCPVCGS--DVERVEGEAVARCTGGLICGAQRKESLKH 442 (671)
T ss_dssp CSBCTTTCC--BEEECTTCSCEEECCGGGCHHHHHHHHHH
T ss_pred CCCCCCCCC--EeEEecCCEEEECCCCCCCHHHHHHHHHH
Confidence 467999997 466554556777993 88777666653
No 185
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=33.12 E-value=14 Score=26.92 Aligned_cols=12 Identities=50% Similarity=1.102 Sum_probs=10.7
Q ss_pred ceEeCCCccccc
Q 030241 23 DTVCSECGLVLE 34 (181)
Q Consensus 23 ~~vC~~CG~Vl~ 34 (181)
-.||..||.|++
T Consensus 90 HliC~~Cg~v~~ 101 (150)
T 2w57_A 90 HLVCLDCGEVIE 101 (150)
T ss_dssp EEEETTTCCEEE
T ss_pred EEEECCCCCEEE
Confidence 489999999986
No 186
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=32.76 E-value=14 Score=26.61 Aligned_cols=12 Identities=42% Similarity=0.935 Sum_probs=10.6
Q ss_pred ceEeCCCccccc
Q 030241 23 DTVCSECGLVLE 34 (181)
Q Consensus 23 ~~vC~~CG~Vl~ 34 (181)
-.+|..||.|++
T Consensus 90 HliC~~Cg~v~~ 101 (145)
T 3eyy_A 90 HLVCRDCTNVIE 101 (145)
T ss_dssp EEEESSSSCEEE
T ss_pred EEEECCCCCEEE
Confidence 489999999985
No 187
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7}
Probab=32.41 E-value=13 Score=28.11 Aligned_cols=30 Identities=23% Similarity=0.369 Sum_probs=19.4
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCcccc
Q 030241 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVL 33 (181)
Q Consensus 4 ~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~Vl 33 (181)
..|-+||...+--....-|-.+|.+|.-|-
T Consensus 23 ~~CaDCga~~P~WaS~nlGvflCi~CSGiH 52 (163)
T 3sub_A 23 NKCFDCGISNPDWVSVNHGIFLCINCSGVH 52 (163)
T ss_dssp GBCTTTCCBSCCEEETTTTEEECHHHHHHH
T ss_pred CccccCCCCCCCeEEecCCeeEHHhhhHHh
Confidence 458888874333344467888888886654
No 188
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=31.92 E-value=15 Score=25.95 Aligned_cols=13 Identities=38% Similarity=0.897 Sum_probs=11.2
Q ss_pred CceEeCCCccccc
Q 030241 22 GDTVCSECGLVLE 34 (181)
Q Consensus 22 G~~vC~~CG~Vl~ 34 (181)
.-.+|..||.|++
T Consensus 82 ~HliC~~Cg~v~~ 94 (131)
T 2o03_A 82 HHLVCRSCGSTIE 94 (131)
T ss_dssp EEEEETTTCCEEE
T ss_pred CEEEeCCCCCEEE
Confidence 4589999999986
No 189
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=31.65 E-value=15 Score=26.32 Aligned_cols=12 Identities=42% Similarity=0.980 Sum_probs=10.6
Q ss_pred ceEeCCCccccc
Q 030241 23 DTVCSECGLVLE 34 (181)
Q Consensus 23 ~~vC~~CG~Vl~ 34 (181)
-.+|..||.|++
T Consensus 87 HliC~~Cg~v~~ 98 (139)
T 3mwm_A 87 HLVCRACGKAVE 98 (139)
T ss_dssp EEEETTTCCEEE
T ss_pred EEEECCCCCEee
Confidence 399999999986
No 190
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.46 E-value=21 Score=24.19 Aligned_cols=9 Identities=22% Similarity=0.641 Sum_probs=6.0
Q ss_pred CCCCCCCCC
Q 030241 4 AFCSDCKKH 12 (181)
Q Consensus 4 ~~Cp~Cg~~ 12 (181)
..||.|+..
T Consensus 46 ~~C~~C~G~ 54 (104)
T 2ctt_A 46 QHCHYCGGS 54 (104)
T ss_dssp EECSSSSSS
T ss_pred ccCCCCCCC
Confidence 467888763
No 191
>2jrr_A Uncharacterized protein; solution structure, SIR90, structural genomics, PSI-2, protein structure initiative; NMR {Silicibacter pomeroyi}
Probab=31.04 E-value=20 Score=22.98 Aligned_cols=17 Identities=18% Similarity=0.315 Sum_probs=13.9
Q ss_pred eCCCCceEeCCCccccc
Q 030241 18 DHSAGDTVCSECGLVLE 34 (181)
Q Consensus 18 D~~~G~~vC~~CG~Vl~ 34 (181)
|.+.|...|.-||....
T Consensus 35 d~~~g~~~CpYCg~~f~ 51 (67)
T 2jrr_A 35 PEDTGWVECPYCDCKYV 51 (67)
T ss_dssp CTTTSEEEETTTTEEEE
T ss_pred cCCCCeEECCCCCCEEE
Confidence 33679999999999874
No 192
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=30.33 E-value=16 Score=26.98 Aligned_cols=12 Identities=33% Similarity=1.135 Sum_probs=10.6
Q ss_pred ceEeCCCccccc
Q 030241 23 DTVCSECGLVLE 34 (181)
Q Consensus 23 ~~vC~~CG~Vl~ 34 (181)
-.+|..||.|++
T Consensus 107 HliC~~CG~v~e 118 (162)
T 4ets_A 107 HMICKNCGKIIE 118 (162)
T ss_dssp EEEETTTCCEEE
T ss_pred EEEECCCCCEEE
Confidence 389999999986
No 193
>2f9y_B Acetyl-coenzyme A carboxylase carboxyl transferas beta; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4
Probab=30.30 E-value=14 Score=30.51 Aligned_cols=41 Identities=22% Similarity=0.518 Sum_probs=26.6
Q ss_pred CCCCCCCCCCceeEeC--CCCceEeCCCccccc-------cCCccccccccccc
Q 030241 4 AFCSDCKKHTEVVFDH--SAGDTVCSECGLVLE-------SHSIDETSEWRTFA 48 (181)
Q Consensus 4 ~~Cp~Cg~~~~iv~D~--~~G~~vC~~CG~Vl~-------e~~id~~~Ewr~F~ 48 (181)
.+||+|+. .++.. ..-..||..||.=.. +.++|.++ |..|.
T Consensus 25 ~kc~~~~~---~~~~~~l~~~~~v~~~~~~~~r~~arerI~~L~D~gs-F~E~~ 74 (304)
T 2f9y_B 25 TKCDSCGQ---VLYRAELERNLEVCPKCDHHMRMTARNRLHSLLDEGS-LVELG 74 (304)
T ss_dssp ECCTTTCC---CEETTHHHHTTTBCTTTCCBCCCCHHHHHHHHSCSSC-CEECS
T ss_pred Hhhhhccc---hhhHHHHHHHhCCCCCCCCCCCCCHHHHHHHHCCCCc-EEEEC
Confidence 47999996 34444 267799999997543 34466653 44444
No 194
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=29.57 E-value=59 Score=18.91 Aligned_cols=17 Identities=6% Similarity=-0.128 Sum_probs=13.4
Q ss_pred HHHHHHHhCCchHHHHH
Q 030241 112 IATMSDRIGQMRYIRRW 128 (181)
Q Consensus 112 I~~ia~~L~Lp~~v~e~ 128 (181)
.++||..||++...+..
T Consensus 16 ~~eIA~~l~is~~tV~~ 32 (61)
T 2jpc_A 16 NHGISEKLHISIKTVET 32 (61)
T ss_dssp SHHHHHHTCSCHHHHHH
T ss_pred HHHHHHHhCCCHHHHHH
Confidence 46889999998876665
No 195
>1twf_J DNA-directed RNA polymerases I, II, and III 8.3 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.11.1 PDB: 1i3q_J 1i6h_J 1k83_J* 1nik_J 1nt9_J 1pqv_J 1r5u_J 1r9s_J* 1r9t_J* 1sfo_J* 1twa_J* 1twc_J* 1i50_J* 1twg_J* 1twh_J* 1wcm_J 1y1v_J 1y1w_J 1y1y_J 1y77_J* ...
Probab=28.43 E-value=16 Score=23.67 Aligned_cols=13 Identities=31% Similarity=0.728 Sum_probs=10.5
Q ss_pred eEeCCCccccccC
Q 030241 24 TVCSECGLVLESH 36 (181)
Q Consensus 24 ~vC~~CG~Vl~e~ 36 (181)
+.|..||.|+.+.
T Consensus 5 VRCFTCGkvi~~~ 17 (70)
T 1twf_J 5 VRCFSCGKVVGDK 17 (70)
T ss_dssp SBCTTTCCBCTTC
T ss_pred eecCCCCCChHHH
Confidence 5799999999643
No 196
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Probab=28.38 E-value=65 Score=21.13 Aligned_cols=27 Identities=4% Similarity=-0.052 Sum_probs=22.3
Q ss_pred HHHHHHHHhCCchHHHHHHHHHHHHhh
Q 030241 111 TIATMSDRIGQMRYIRRWKIKSLVEAE 137 (181)
Q Consensus 111 ~I~~ia~~L~Lp~~v~e~~i~k~a~~~ 137 (181)
.|..||..|+||..-+|..+-+++.++
T Consensus 32 sl~~La~ll~ls~~~vE~~ls~mI~~~ 58 (84)
T 1ufm_A 32 TFEELGALLEIPAAKAEKIASQMITEG 58 (84)
T ss_dssp EHHHHHHHTTSCHHHHHHHHHHHHHTT
T ss_pred eHHHHHHHHCcCHHHHHHHHHHHHhCC
Confidence 368999999999888888777777766
No 197
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=28.25 E-value=33 Score=22.85 Aligned_cols=29 Identities=24% Similarity=0.620 Sum_probs=20.0
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCccccccC
Q 030241 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLESH 36 (181)
Q Consensus 4 ~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~Vl~e~ 36 (181)
..|..|+.. +..-.-.--|..||.|+=..
T Consensus 21 ~~C~~C~~~----F~~~~RrhhCr~CG~v~C~~ 49 (90)
T 3t7l_A 21 PNCMNCQVK----FTFTKRRHHCRACGKVFCGV 49 (90)
T ss_dssp CBCTTTCCB----CCSSSCCEECTTTCCEECGG
T ss_pred CcCcCCCCc----ccchhhCccccCCCCEECCc
Confidence 459999862 34445678889998887543
No 198
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=27.87 E-value=14 Score=30.22 Aligned_cols=30 Identities=20% Similarity=0.378 Sum_probs=21.8
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCcccc
Q 030241 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVL 33 (181)
Q Consensus 4 ~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~Vl 33 (181)
..|-+||...+--....-|-.+|.+|.-|-
T Consensus 38 ~~c~dc~~~~~~~~~~~~~~~~c~~c~~~h 67 (329)
T 3o47_A 38 NVCFECGAFNPQWVSVTYGIWICLECSGRH 67 (329)
T ss_dssp TBCTTTCCBSCCEEEGGGTEEECHHHHHHH
T ss_pred CcCCCCCCCCCCeEEecCCEEEChhhhhhh
Confidence 469999985444445578999999997553
No 199
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=27.63 E-value=39 Score=22.10 Aligned_cols=28 Identities=29% Similarity=0.666 Sum_probs=19.1
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCcccccc
Q 030241 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLES 35 (181)
Q Consensus 4 ~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~Vl~e 35 (181)
..|..|+.. |..-.-.--|..||.|+=.
T Consensus 22 ~~C~~C~~~----Fs~~~RrHHCR~CG~v~C~ 49 (84)
T 1z2q_A 22 PACNGCGCV----FTTTVRRHHCRNCGYVLCG 49 (84)
T ss_dssp CBCTTTCCB----CCTTSCCEECTTTCCEECT
T ss_pred CCCcCcCCc----cccchhcccccCCCcEECh
Confidence 468899862 4444566778888888743
No 200
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.57 E-value=48 Score=21.58 Aligned_cols=29 Identities=28% Similarity=0.602 Sum_probs=18.0
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCccccccC
Q 030241 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLESH 36 (181)
Q Consensus 4 ~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~Vl~e~ 36 (181)
..|..|+.. |..-.-.--|..||.|+=..
T Consensus 15 ~~C~~C~~~----F~~~~RrHHCR~CG~vfC~~ 43 (84)
T 1x4u_A 15 GNCTGCSAT----FSVLKKRRSCSNCGNSFCSR 43 (84)
T ss_dssp SSCSSSCCC----CCSSSCCEECSSSCCEECTT
T ss_pred CcCcCcCCc----cccchhhhhhcCCCcEEChh
Confidence 469999863 33345556677777776433
No 201
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Probab=27.52 E-value=23 Score=21.43 Aligned_cols=21 Identities=19% Similarity=0.532 Sum_probs=13.5
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCc
Q 030241 4 AFCSDCKKHTEVVFDHSAGDTVCSECG 30 (181)
Q Consensus 4 ~~Cp~Cg~~~~iv~D~~~G~~vC~~CG 30 (181)
..||.|+....++. ..|..|+
T Consensus 10 ~~C~~C~GsG~~i~------~~C~~C~ 30 (53)
T 3lcz_A 10 TTCPNCNGSGREEP------EPCPKCL 30 (53)
T ss_dssp EECTTTTTSCEETT------EECTTTT
T ss_pred ccCcCCcccccCCC------CcCCCCC
Confidence 46999976444432 5677774
No 202
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=27.46 E-value=37 Score=26.17 Aligned_cols=30 Identities=23% Similarity=0.683 Sum_probs=21.4
Q ss_pred CCCCCCCCCCCceeEeCCCCceEeCCCccccccC
Q 030241 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESH 36 (181)
Q Consensus 3 ~~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~Vl~e~ 36 (181)
...|+.|+.. |..-.-.--|..||.|+=..
T Consensus 161 ~~~C~~C~~~----F~~~~rrhhCr~CG~v~C~~ 190 (220)
T 1dvp_A 161 GRVCHRCRVE----FTFTNRKHHCRNCGQVFCGQ 190 (220)
T ss_dssp CSBCTTTCCB----CCSSSCCEECTTTCCEECST
T ss_pred CCccCCCCCc----cCCcccccccCCcCCEEChH
Confidence 3579999862 34456678899999987544
No 203
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=27.40 E-value=34 Score=24.28 Aligned_cols=28 Identities=25% Similarity=0.637 Sum_probs=19.1
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCcccccc
Q 030241 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLES 35 (181)
Q Consensus 4 ~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~Vl~e 35 (181)
..|..|+.. |..-.-.--|..||.|+=.
T Consensus 70 ~~C~~C~~~----Fs~~~RrHHCR~CG~vfC~ 97 (125)
T 1joc_A 70 QNCMACGKG----FSVTVRRHHCRQCGNIFCA 97 (125)
T ss_dssp CBCTTTCCB----CCSSSCCEECTTTCCEECG
T ss_pred CCCcCcCCc----cccccccccCCCCCeEECh
Confidence 469999862 3444566778888888743
No 204
>3uej_A NPKC-delta, protein kinase C delta type; proteine kinase cdelta, phosphotransferase, anesthetic bindi metal binding protein; 1.30A {Mus musculus} PDB: 3ugi_A 3ugl_A 3uey_A 3ugd_A 3uff_A 1ptq_A 1ptr_A*
Probab=27.19 E-value=43 Score=20.57 Aligned_cols=30 Identities=20% Similarity=0.722 Sum_probs=19.4
Q ss_pred CCCCCCCCCCCceeEeCCCCceEeCCCcccccc
Q 030241 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLES 35 (181)
Q Consensus 3 ~~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~Vl~e 35 (181)
+..|..|++ ++.-...--+-|.+|++..-.
T Consensus 20 pt~C~~C~~---~l~Gl~~qg~~C~~C~~~~Hk 49 (65)
T 3uej_A 20 PTFCDHCGS---LLWGLVKQGLKCEDCGMNVHH 49 (65)
T ss_dssp CCBCTTTCC---BCCSSSSCEEEETTTCCEECH
T ss_pred CCcccccCh---hhhccCceeeECCCCCCeEch
Confidence 567999986 233222334789999988643
No 205
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=27.11 E-value=24 Score=24.66 Aligned_cols=10 Identities=40% Similarity=1.235 Sum_probs=5.4
Q ss_pred eEeCCCcccc
Q 030241 24 TVCSECGLVL 33 (181)
Q Consensus 24 ~vC~~CG~Vl 33 (181)
..|.+||.++
T Consensus 68 ~~C~~CG~~F 77 (105)
T 2gmg_A 68 AQCRKCGFVF 77 (105)
T ss_dssp CBBTTTCCBC
T ss_pred cChhhCcCee
Confidence 4455555554
No 206
>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}
Probab=26.85 E-value=12 Score=21.36 Aligned_cols=14 Identities=21% Similarity=0.719 Sum_probs=10.2
Q ss_pred CceEeCCCcccccc
Q 030241 22 GDTVCSECGLVLES 35 (181)
Q Consensus 22 G~~vC~~CG~Vl~e 35 (181)
....|..||..+..
T Consensus 8 ~~~~C~~C~~~i~~ 21 (39)
T 2i5o_A 8 DQVPCEKCGSLVPV 21 (39)
T ss_dssp CEEECTTTCCEEEG
T ss_pred CCcccccccCcCCc
Confidence 44678888888764
No 207
>2jvm_A Uncharacterized protein; alpha+beta, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Rhodobacter sphaeroides 2}
Probab=26.16 E-value=29 Score=23.08 Aligned_cols=21 Identities=19% Similarity=0.306 Sum_probs=15.9
Q ss_pred CceeEeC--CCCceEeCCCcccc
Q 030241 13 TEVVFDH--SAGDTVCSECGLVL 33 (181)
Q Consensus 13 ~~iv~D~--~~G~~vC~~CG~Vl 33 (181)
+.+..|- ..|...|.-||+..
T Consensus 41 PrVyL~ld~~~g~~~CpYCg~~f 63 (80)
T 2jvm_A 41 PRVWLSIPHETGFVECGYCDRRY 63 (80)
T ss_dssp CCEEEECCTTTCEEECSSSSCEE
T ss_pred CEEEEEccCCCCeEECCCCCCEE
Confidence 3444554 68999999999986
No 208
>2g45_A Ubiquitin carboxyl-terminal hydrolase 5; zinc finger, hydrolase; 1.99A {Homo sapiens} SCOP: g.44.1.5 PDB: 2g43_A 2l80_A
Probab=26.01 E-value=43 Score=24.02 Aligned_cols=21 Identities=24% Similarity=0.325 Sum_probs=13.1
Q ss_pred CCCCCCCCCceeEeCCCCceEeCCCcccc
Q 030241 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVL 33 (181)
Q Consensus 5 ~Cp~Cg~~~~iv~D~~~G~~vC~~CG~Vl 33 (181)
.|..|+. . ..-.+|..||.|-
T Consensus 36 ~C~~C~~-~-------~~LwlCL~CG~vg 56 (129)
T 2g45_A 36 KCSKCDM-R-------ENLWLNLTDGSIL 56 (129)
T ss_dssp CCSSSSC-C-------SSEEEETTTCCEE
T ss_pred cCccccC-c-------CceEEeccCCccc
Confidence 4666765 2 1356777777774
No 209
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A 1f8h_A 1ff1_A
Probab=25.61 E-value=1.4e+02 Score=19.93 Aligned_cols=51 Identities=8% Similarity=-0.018 Sum_probs=35.2
Q ss_pred HHHHHHHHhCCchHHHHHHHHHHHH-hh---hCHHHHHHHHHHHHHHhCCCCcccc
Q 030241 111 TIATMSDRIGQMRYIRRWKIKSLVE-AE---IKTHYWLLACTLLVDKKTSHALLRV 162 (181)
Q Consensus 111 ~I~~ia~~L~Lp~~v~e~~i~k~a~-~~---l~~~~v~AAclYiACR~~~~p~t~~ 162 (181)
++..+-.++||+...++ +|++.+. ++ ++.+..+.|...+.++++|.|+...
T Consensus 35 el~~~l~~~gl~~~el~-~i~~~~D~d~dG~id~~EF~~~m~~~~~~~~g~~lP~~ 89 (106)
T 1eh2_A 35 KVKPVLLNSKLPVDILG-RVWELSDIDHDGMLDRDEFAVAMFLVYCALEKEPVPMS 89 (106)
T ss_dssp HHHHHHHTTTCCHHHHH-HHHHHHCSSCSSBCCHHHHHHHHHHHHHHHHTCCCCSS
T ss_pred HHHHHHHHcCCCHHHHH-HHHHHHcCCCCCcCcHHHHHHHHHHHHHHHcCCCCCCC
Confidence 44444456788854322 6777774 23 5888888888888999999988743
No 210
>3e0m_A Peptide methionine sulfoxide reductase MSRA/MSRB 1; fusion, msrab, linker, hinge, cell membrane, membrane, multifunctional enzyme, oxidoreductase; 2.40A {Streptococcus pneumoniae}
Probab=25.47 E-value=28 Score=28.99 Aligned_cols=32 Identities=19% Similarity=0.244 Sum_probs=26.0
Q ss_pred CCCCceEeCCCccccc--cCCccccccccccccC
Q 030241 19 HSAGDTVCSECGLVLE--SHSIDETSEWRTFANE 50 (181)
Q Consensus 19 ~~~G~~vC~~CG~Vl~--e~~id~~~Ewr~F~~~ 50 (181)
.+.|.++|..||.-|= +.-.|+|.-|.+|.+.
T Consensus 205 ~~~G~Y~c~~cg~pLF~S~~KfdSg~GWPSF~~~ 238 (313)
T 3e0m_A 205 FEEGIYVDITTGEPLFFAKDKFASGCGWPSFSRP 238 (313)
T ss_dssp CCSEEEEETTTCCEEEEGGGBCCCCSSSCEESSC
T ss_pred CCCeEEEecCCCccccCCCccccCCCCCcccCcc
Confidence 4789999999998874 4456889999999853
No 211
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=24.71 E-value=32 Score=24.49 Aligned_cols=29 Identities=24% Similarity=0.603 Sum_probs=20.6
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCccccccC
Q 030241 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLESH 36 (181)
Q Consensus 4 ~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~Vl~e~ 36 (181)
..|..|+.. |..-.-.--|..||.|+=..
T Consensus 20 ~~C~~C~~~----Fs~~~RkHHCR~CG~ifC~~ 48 (120)
T 1y02_A 20 PSCKSCGAH----FANTARKQTCLDCKKNFCMT 48 (120)
T ss_dssp CCCTTTCCC----CSSGGGCEECTTTCCEECGG
T ss_pred CcccCcCCc----cccccccccCCCCCCeeCHH
Confidence 468999862 44456678899999987543
No 212
>2eli_A Protein kinase C alpha type; PKC-alpha, PKC-A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.19 E-value=51 Score=21.55 Aligned_cols=35 Identities=14% Similarity=0.566 Sum_probs=22.0
Q ss_pred CCCCCCCCCCCCceeEeCCCCceEeCCCccccccCCcc
Q 030241 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSID 39 (181)
Q Consensus 2 ~~~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~Vl~e~~id 39 (181)
.+.+|-.|++ ++.-...--+.|.+|++.+-.+-.+
T Consensus 27 ~pt~C~~C~~---~l~Gl~kqG~~C~~C~~~~Hk~C~~ 61 (85)
T 2eli_A 27 SPTFCDHCGS---LLYGLIHQGMKCDTCDMNVHKQCVI 61 (85)
T ss_dssp SCCBCSSSCC---BCCCSSSCEEECSSSCCEEETTTTT
T ss_pred CCcCCcccCc---cccccccCCCcCCCcCCccCHhHHh
Confidence 3567999986 2332222336799999988655543
No 213
>2yuu_A NPKC-delta, protein kinase C delta type; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.17 E-value=46 Score=21.61 Aligned_cols=34 Identities=29% Similarity=0.693 Sum_probs=22.4
Q ss_pred CCCCCCCCCCCceeEeCCCCceEeCCCccccccCCcc
Q 030241 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSID 39 (181)
Q Consensus 3 ~~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~Vl~e~~id 39 (181)
+.+|-.|+. ++.-...--+.|.+|++++-..-.+
T Consensus 28 pt~C~~C~~---~lwGl~kqg~~C~~C~~~~Hk~C~~ 61 (83)
T 2yuu_A 28 PTFCSVCKD---FVWGLNKQGYKCRQCNAAIHKKCID 61 (83)
T ss_dssp CCCCSSSCC---CCCSSSCCEEEETTTCCEECTTGGG
T ss_pred CcChhhcCh---hhccccccccccCCcCCeeChhhhh
Confidence 468999986 2332222337899999998665544
No 214
>2w0t_A Lethal(3)malignant brain tumor-like 2 protein; zinc, YACG, LMBL2, nucleus, zinc-finger, RNA binding, MBT repeats, PCG proteins, polymorphism; NMR {Homo sapiens}
Probab=24.12 E-value=32 Score=20.13 Aligned_cols=15 Identities=33% Similarity=0.742 Sum_probs=11.6
Q ss_pred CCCCceEeCCCcccc
Q 030241 19 HSAGDTVCSECGLVL 33 (181)
Q Consensus 19 ~~~G~~vC~~CG~Vl 33 (181)
...+..+|.-||.|=
T Consensus 2 ~~~~~~~CE~CG~~g 16 (43)
T 2w0t_A 2 SGSEPAVCEMCGIVG 16 (43)
T ss_dssp CSCCEEECTTTCCEE
T ss_pred CCCceehhhhhcCcc
Confidence 345678999999873
No 215
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=24.09 E-value=44 Score=26.00 Aligned_cols=30 Identities=20% Similarity=0.593 Sum_probs=20.7
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCccccccCC
Q 030241 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHS 37 (181)
Q Consensus 4 ~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~Vl~e~~ 37 (181)
..|..|+.. |..-.-.--|..||.|+=..-
T Consensus 165 ~~C~~C~~~----F~~~~RrhHCR~CG~v~C~~C 194 (226)
T 3zyq_A 165 EECHRCRVQ----FGVMTRKHHCRACGQIFCGKC 194 (226)
T ss_dssp SBCTTTCCB----CBTTBCCEECTTTCCEECTTT
T ss_pred CCCcCcCCC----CCccccccccCCCcCEeChhh
Confidence 579999862 344456688888888875443
No 216
>4a18_A RPL37, ribosomal protein L37; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_A 4a1b_A 4a1d_A
Probab=24.07 E-value=37 Score=23.20 Aligned_cols=23 Identities=26% Similarity=0.879 Sum_probs=16.3
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCcc
Q 030241 4 AFCSDCKKHTEVVFDHSAGDTVCSECGL 31 (181)
Q Consensus 4 ~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~ 31 (181)
..|..||+ .. +.. -...|..||+
T Consensus 17 tlCrRCG~-~s--yH~--qK~~Ca~CGy 39 (94)
T 4a18_A 17 TLCRRCGK-AT--YHK--QKLRCAACGY 39 (94)
T ss_dssp EECTTTCS-EE--EET--TTTEESSSCG
T ss_pred ceecCcCc-hh--hhh--ccccccccCC
Confidence 45999997 33 332 3459999999
No 217
>1m2k_A Silent information regulator 2; protein-ligand complex, gene regulation; HET: APR; 1.47A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1m2g_A* 1m2h_A* 1m2j_A* 1m2n_A* 1ici_A*
Probab=23.52 E-value=15 Score=29.08 Aligned_cols=34 Identities=21% Similarity=0.540 Sum_probs=23.0
Q ss_pred CCCCCCCCCCceeEeC----CCC-ceEeCCCccccccCCcccc
Q 030241 4 AFCSDCKKHTEVVFDH----SAG-DTVCSECGLVLESHSIDET 41 (181)
Q Consensus 4 ~~Cp~Cg~~~~iv~D~----~~G-~~vC~~CG~Vl~e~~id~~ 41 (181)
..|..|+. . ++. ..+ ...|..||-++..+++-.|
T Consensus 122 ~~C~~C~~-~---~~~~~~~~~~~~p~C~~Cgg~lrP~Vv~Fg 160 (249)
T 1m2k_A 122 VRCTSCNN-S---FEVESAPKIPPLPKCDKCGSLLRPGVVWAG 160 (249)
T ss_dssp EEESSSSC-E---EECSSCCCSSSCCBCSSSSSBEEEEECCTT
T ss_pred eEeCCCCC-c---ccchhhccCCCCCCCCCCCCCcCCeEEecC
Confidence 46999986 2 221 223 4689999999988876543
No 218
>1qjt_A EH1, epidermal growth factor receptor substrate substrate 15, EPS15; EH domain, EF-hand, solution structure, S100 protein; NMR {Mus musculus} SCOP: a.39.1.6
Probab=23.48 E-value=1.3e+02 Score=19.54 Aligned_cols=49 Identities=16% Similarity=0.194 Sum_probs=33.4
Q ss_pred HHHHHHHHhCCchHHHHHHHHHHHH-hh---hCHHHHHHHHHHHHHHhCCCCcc
Q 030241 111 TIATMSDRIGQMRYIRRWKIKSLVE-AE---IKTHYWLLACTLLVDKKTSHALL 160 (181)
Q Consensus 111 ~I~~ia~~L~Lp~~v~e~~i~k~a~-~~---l~~~~v~AAclYiACR~~~~p~t 160 (181)
++..+...++++...++ ++++.+. ++ +..+..+.+.-.++..++|.|++
T Consensus 32 el~~~l~~~~l~~~~l~-~i~~~~D~d~dG~i~~~EF~~~~~~~~~~~~g~~~~ 84 (99)
T 1qjt_A 32 DAAAFLKKSGLPDLILG-KIWDLADTDGKGVLSKQEFFVALRLVACAQNGLEVS 84 (99)
T ss_dssp HHHHHHHTSSSCHHHHH-HHHHHHCCSSSSSCCSHHHHHHHHHHHHHTTTCCSS
T ss_pred HHHHHHHHcCCCHHHHH-HHHHHHCCCCCCcCCHHHHHHHHHHHHHHHcCCCCC
Confidence 34444455788743211 6777774 22 57888888888889999999887
No 219
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=23.45 E-value=25 Score=31.00 Aligned_cols=7 Identities=43% Similarity=1.189 Sum_probs=5.3
Q ss_pred CCCCCCC
Q 030241 5 FCSDCKK 11 (181)
Q Consensus 5 ~Cp~Cg~ 11 (181)
.||.||.
T Consensus 157 ~cp~c~~ 163 (560)
T 3h99_A 157 TCPKCKS 163 (560)
T ss_dssp ECTTTCC
T ss_pred CCCCCCC
Confidence 4888885
No 220
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*
Probab=22.89 E-value=25 Score=29.74 Aligned_cols=31 Identities=23% Similarity=0.420 Sum_probs=23.1
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCccccc
Q 030241 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLE 34 (181)
Q Consensus 4 ~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~Vl~ 34 (181)
..|-+||...+--....-|-.+|.+|.-|-.
T Consensus 35 ~~C~dC~~~~p~w~s~~~g~~~C~~Csg~hr 65 (386)
T 3lju_X 35 ARCADCGAPDPDWASYTLGVFICLSCSGIHR 65 (386)
T ss_dssp SBCTTTCCBSCCEEETTTTEEECHHHHHHHH
T ss_pred CcCccCCCCCCCeEEecccEEEhhhhchHhh
Confidence 4699999854444556789999999987643
No 221
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=22.85 E-value=53 Score=21.78 Aligned_cols=29 Identities=21% Similarity=0.494 Sum_probs=17.2
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCccccccC
Q 030241 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLESH 36 (181)
Q Consensus 4 ~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~Vl~e~ 36 (181)
..|..|+.. |..-.-.--|..||.|+=..
T Consensus 10 ~~C~~C~~~----F~~~~RrHHCR~CG~vfC~~ 38 (88)
T 1wfk_A 10 SRCYGCAVK----FTLFKKEYGCKNCGRAFCNG 38 (88)
T ss_dssp SBCTTTCCB----CCSSSCEEECSSSCCEEETT
T ss_pred CCCcCcCCc----ccCccccccCCCCCCEEChh
Confidence 469999862 33334455666666665433
No 222
>3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis}
Probab=22.84 E-value=19 Score=32.83 Aligned_cols=35 Identities=17% Similarity=0.443 Sum_probs=0.4
Q ss_pred CCCCCCCCCCCceeE-eCCCCceEeCC---CccccccCCcc
Q 030241 3 DAFCSDCKKHTEVVF-DHSAGDTVCSE---CGLVLESHSID 39 (181)
Q Consensus 3 ~~~Cp~Cg~~~~iv~-D~~~G~~vC~~---CG~Vl~e~~id 39 (181)
+..||.||+ .++. ....-.+.|.+ |---+.++++-
T Consensus 415 P~~CP~Cgs--~l~~~~~~~~~~rC~n~~~CpaQ~~~~l~h 453 (615)
T 3sgi_A 415 PTTCPECGS--PLAPEKEGDADIRCPNARGCPGQLRERVFH 453 (615)
T ss_dssp C----------------------------------------
T ss_pred CCCCCCCCC--eeeecCCCCEEEEcCCCCCCHHHHHHHHHH
Confidence 367999997 3544 22333689986 87777777754
No 223
>2enn_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=22.64 E-value=46 Score=21.33 Aligned_cols=34 Identities=26% Similarity=0.677 Sum_probs=21.8
Q ss_pred CCCCCCCCCCCceeEeCCCCceEeCCCccccccCCcc
Q 030241 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSID 39 (181)
Q Consensus 3 ~~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~Vl~e~~id 39 (181)
+..|..|++ ++.-...--+.|.+|++++-..-.+
T Consensus 34 pt~C~~C~~---~lwGl~kqG~~C~~C~~~~Hk~C~~ 67 (77)
T 2enn_A 34 PTFCSVCHE---FVWGLNKQGYQCRQCNAAIHKKCID 67 (77)
T ss_dssp CEECSSSCC---EECCTTCCEEECSSSCCEEESGGGS
T ss_pred CcCccccCh---hhccccccccCcCCCCCcCCHhHHh
Confidence 467999985 3443222347799999988655443
No 224
>4cpa_I Metallocarboxypeptidase inhibitor; hydrolase (C-terminal peptidase); 2.50A {Solanum tuberosum} SCOP: g.3.2.1 PDB: 1h20_A
Probab=22.36 E-value=20 Score=20.09 Aligned_cols=23 Identities=26% Similarity=0.514 Sum_probs=16.3
Q ss_pred CCCCCCCCceeEeCCCCceEeCCC
Q 030241 6 CSDCKKHTEVVFDHSAGDTVCSEC 29 (181)
Q Consensus 6 Cp~Cg~~~~iv~D~~~G~~vC~~C 29 (181)
=|.|+++ --..|.-.|-..|..|
T Consensus 5 D~~C~KP-C~T~DDCS~gw~CqaC 27 (38)
T 4cpa_I 5 DPICNKP-CKTHDDCSGAWFCQAC 27 (38)
T ss_dssp CTTTTCB-CSSSSSSCCCSSCCEE
T ss_pred ccccCCC-ccCccccccchHHHHH
Confidence 3667763 3346888888999887
No 225
>1y8f_A UNC-13 homolog A, MUNC13-1; cysteine-rich domain, C1-domain, zinc-binding domain, endocytosis/exocytosis,signaling protein complex; NMR {Rattus norvegicus}
Probab=22.28 E-value=47 Score=20.51 Aligned_cols=31 Identities=19% Similarity=0.704 Sum_probs=19.6
Q ss_pred CCCCCCCCCCCceeEeCCCCceEeCCCccccccC
Q 030241 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESH 36 (181)
Q Consensus 3 ~~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~Vl~e~ 36 (181)
+..|..|++ ++.-...--+.|.+|++++-..
T Consensus 24 pt~C~~C~~---~l~Gl~~qg~~C~~C~~~~Hk~ 54 (66)
T 1y8f_A 24 PTYCYECEG---LLWGIARQGMRCTECGVKCHEK 54 (66)
T ss_dssp CCCCTTTCC---CCCSSCCEEEEETTTCCEECTT
T ss_pred CcChhhcCh---hhcccCcceeEcCCCCCeeCHH
Confidence 567999986 2332212236799999887544
No 226
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=21.93 E-value=27 Score=23.83 Aligned_cols=8 Identities=25% Similarity=0.804 Sum_probs=6.2
Q ss_pred CCCCCCCC
Q 030241 4 AFCSDCKK 11 (181)
Q Consensus 4 ~~Cp~Cg~ 11 (181)
..||.||+
T Consensus 48 ~~CPvCgs 55 (112)
T 1l8d_A 48 GKCPVCGR 55 (112)
T ss_dssp EECTTTCC
T ss_pred CCCCCCCC
Confidence 46888887
No 227
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=21.32 E-value=93 Score=20.29 Aligned_cols=23 Identities=13% Similarity=0.094 Sum_probs=17.2
Q ss_pred HHHHHHHHhCCchHHHHH---HHHHH
Q 030241 111 TIATMSDRIGQMRYIRRW---KIKSL 133 (181)
Q Consensus 111 ~I~~ia~~L~Lp~~v~e~---~i~k~ 133 (181)
...+||..|+++...++. .+|++
T Consensus 46 s~~eIA~~L~iS~~TV~~~~~~i~~K 71 (90)
T 3ulq_B 46 TNQEIADALHLSKRSIEYSLTSIFNK 71 (90)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 367899999999877766 45444
No 228
>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*
Probab=21.04 E-value=46 Score=20.05 Aligned_cols=21 Identities=29% Similarity=0.843 Sum_probs=12.7
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCc
Q 030241 4 AFCSDCKKHTEVVFDHSAGDTVCSECG 30 (181)
Q Consensus 4 ~~Cp~Cg~~~~iv~D~~~G~~vC~~CG 30 (181)
..||.|+....++ ...|..|+
T Consensus 10 ~~C~~C~GsG~~~------~~~C~~C~ 30 (53)
T 2bx9_A 10 VACPKCERAGEIE------GTPCPACS 30 (53)
T ss_dssp EECTTTTTSSEET------TEECTTTT
T ss_pred ccCCCCcceeccC------CCCCccCC
Confidence 4699998743321 25677774
No 229
>1n0z_A ZNF265; zinc finger, RNA splicing, transcription; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=20.36 E-value=34 Score=19.95 Aligned_cols=15 Identities=47% Similarity=0.935 Sum_probs=12.7
Q ss_pred eCCCCceEeC--CCccc
Q 030241 18 DHSAGDTVCS--ECGLV 32 (181)
Q Consensus 18 D~~~G~~vC~--~CG~V 32 (181)
+...||.+|. .||.+
T Consensus 9 ~~~~GDW~C~~~~C~~~ 25 (45)
T 1n0z_A 9 RVSDGDWICPDKKCGNV 25 (45)
T ss_dssp SSCSSSCBCSSTTTCCB
T ss_pred CCCCCCcCCCCCCCCCE
Confidence 4578999999 79987
No 230
>1faq_A RAF-1; transferase, serine/threonine-protein kinase, proto- oncogene, zinc, ATP-binding, phorbol-ester binding; NMR {Homo sapiens} SCOP: g.49.1.1 PDB: 1far_A
Probab=20.13 E-value=77 Score=18.22 Aligned_cols=30 Identities=30% Similarity=0.713 Sum_probs=21.0
Q ss_pred CCCCCCCCCCCceeEeCCCCceEeCCCccccccCCcc
Q 030241 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSID 39 (181)
Q Consensus 3 ~~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~Vl~e~~id 39 (181)
+..|..|++ ++. + -+.|.+||+..-.+-.+
T Consensus 14 pt~C~~C~~---~l~---q-G~~C~~C~~~~H~~C~~ 43 (52)
T 1faq_A 14 LAFCDICQK---FLL---N-GFRCQTCGYKFHEHCST 43 (52)
T ss_dssp CEECTTSSS---EEC---S-EEECTTTTCCBCSTTSS
T ss_pred CcCCCCccc---ccc---c-CCEeCCCCCeEChhHHh
Confidence 467999986 333 4 47999999988655443
No 231
>3iz5_l 60S ribosomal protein L37 (L37E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_l 3izc_l 3izs_l 3o58_d 3o5h_d 3u5e_j 3u5i_j 4b6a_j 1s1i_Y 3jyw_Y
Probab=20.00 E-value=32 Score=23.50 Aligned_cols=23 Identities=30% Similarity=0.933 Sum_probs=16.0
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCcc
Q 030241 4 AFCSDCKKHTEVVFDHSAGDTVCSECGL 31 (181)
Q Consensus 4 ~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~ 31 (181)
..|..||+ .. +.. -...|..||+
T Consensus 17 tlCrRCG~-~s--yH~--qK~~Ca~CGy 39 (94)
T 3iz5_l 17 TLCVRCGR-RS--FHL--QKSTCSSCGY 39 (94)
T ss_dssp EECTTTCS-EE--EEG--GGTEETTTCS
T ss_pred ceecCcCc-hh--hhc--ccccccccCC
Confidence 45999997 33 232 2458999998
Done!