BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030242
(180 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9ULC4|MCTS1_HUMAN Malignant T-cell-amplified sequence 1 OS=Homo sapiens GN=MCTS1 PE=1
SV=1
Length = 181
Score = 212 bits (539), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 101/176 (57%), Positives = 132/176 (75%), Gaps = 2/176 (1%)
Query: 1 MFKKFSAEE-VSAQNQVKASVQRKIRQSIADEYPGLEPVLDDLLPKKSPLIVAKCQNHLN 59
MFKKF +E VS Q+K SV + I+ + +++PG+EP L+ ++PKK P+ + +C H+
Sbjct: 1 MFKKFDEKENVSNCIQLKTSVIKGIKNQLIEQFPGIEPWLNQIMPKKDPVKIVRCHEHIE 60
Query: 60 LVLVNNVPLFFNIRDGPYMPTLRLLHQYPNIMKKLQVDRGAIKFVLSGANIMCPGLTSPG 119
++ VN LFF R+GP+ PTLRLLH+YP I+ QVD+GAIKFVLSGANIMCPGLTSPG
Sbjct: 61 ILTVNGELLFFRQREGPFYPTLRLLHKYPFILPHQQVDKGAIKFVLSGANIMCPGLTSPG 120
Query: 120 GSLDEEVGAETPVAIMAEGKQHALAIGFTKMSAKDIKAINKGIGVDNMHYLNDGLW 175
L +T VAIMAEGKQHAL +G KMSA+DI+ +NKGIG++N+HYLNDGLW
Sbjct: 121 AKL-YPAAVDTIVAIMAEGKQHALCVGVMKMSAEDIEKVNKGIGIENIHYLNDGLW 175
>sp|Q2KIE4|MCTS1_BOVIN Malignant T-cell-amplified sequence 1 OS=Bos taurus GN=MCTS1 PE=2
SV=1
Length = 181
Score = 212 bits (539), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 101/176 (57%), Positives = 132/176 (75%), Gaps = 2/176 (1%)
Query: 1 MFKKFSAEE-VSAQNQVKASVQRKIRQSIADEYPGLEPVLDDLLPKKSPLIVAKCQNHLN 59
MFKKF +E VS Q+K SV + I+ + +++PG+EP L+ ++PKK P+ + +C H+
Sbjct: 1 MFKKFDEKENVSNCIQLKTSVIKGIKNQLIEQFPGIEPWLNQIMPKKDPVKIVRCHEHIE 60
Query: 60 LVLVNNVPLFFNIRDGPYMPTLRLLHQYPNIMKKLQVDRGAIKFVLSGANIMCPGLTSPG 119
++ VN LFF R+GP+ PTLRLLH+YP I+ QVD+GAIKFVLSGANIMCPGLTSPG
Sbjct: 61 ILTVNGELLFFRQREGPFYPTLRLLHKYPFILPHQQVDKGAIKFVLSGANIMCPGLTSPG 120
Query: 120 GSLDEEVGAETPVAIMAEGKQHALAIGFTKMSAKDIKAINKGIGVDNMHYLNDGLW 175
L +T VAIMAEGKQHAL +G KMSA+DI+ +NKGIG++N+HYLNDGLW
Sbjct: 121 AKL-YPAAVDTIVAIMAEGKQHALCVGVMKMSAEDIEKVNKGIGIENIHYLNDGLW 175
>sp|Q5PPY1|MCS1A_XENLA Malignant T-cell-amplified sequence 1-A OS=Xenopus laevis
GN=mcts1-a PE=2 SV=1
Length = 181
Score = 212 bits (539), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 103/176 (58%), Positives = 131/176 (74%), Gaps = 2/176 (1%)
Query: 1 MFKKFSAEE-VSAQNQVKASVQRKIRQSIADEYPGLEPVLDDLLPKKSPLIVAKCQNHLN 59
MFKKF +E VS Q+K SV + I+ + D++PG+E L+ ++PKK P+ + +C H+
Sbjct: 1 MFKKFDEKENVSNCIQLKTSVIKGIKNQLIDQFPGIEQWLNQIMPKKDPVKIVRCHEHIE 60
Query: 60 LVLVNNVPLFFNIRDGPYMPTLRLLHQYPNIMKKLQVDRGAIKFVLSGANIMCPGLTSPG 119
++ VN LFF R+GP+ PTLRLLH+YP I+ QVD+GAIKFVLSGANIMCPGLTSPG
Sbjct: 61 ILTVNGELLFFRQREGPFYPTLRLLHKYPFILPHQQVDKGAIKFVLSGANIMCPGLTSPG 120
Query: 120 GSLDEEVGAETPVAIMAEGKQHALAIGFTKMSAKDIKAINKGIGVDNMHYLNDGLW 175
L A+T VAIMAEGKQHAL +G KMSA DI+ INKGIG++N+HYLNDGLW
Sbjct: 121 AKL-YPAAADTVVAIMAEGKQHALCVGVMKMSADDIEKINKGIGIENIHYLNDGLW 175
>sp|Q9DB27|MCTS1_MOUSE Malignant T-cell-amplified sequence 1 OS=Mus musculus GN=Mcts1 PE=2
SV=1
Length = 181
Score = 211 bits (538), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 101/176 (57%), Positives = 132/176 (75%), Gaps = 2/176 (1%)
Query: 1 MFKKFSAEE-VSAQNQVKASVQRKIRQSIADEYPGLEPVLDDLLPKKSPLIVAKCQNHLN 59
MFKKF +E VS Q+K SV + I+ + +++PG+EP L+ ++PKK P+ + +C H+
Sbjct: 1 MFKKFDEKENVSNCIQLKTSVIKGIKNQLLEQFPGIEPWLNQIMPKKDPVKIVRCHEHIE 60
Query: 60 LVLVNNVPLFFNIRDGPYMPTLRLLHQYPNIMKKLQVDRGAIKFVLSGANIMCPGLTSPG 119
++ VN LFF R+GP+ PTLRLLH+YP I+ QVD+GAIKFVLSGANIMCPGLTSPG
Sbjct: 61 ILTVNGELLFFRQREGPFYPTLRLLHKYPFILPHQQVDKGAIKFVLSGANIMCPGLTSPG 120
Query: 120 GSLDEEVGAETPVAIMAEGKQHALAIGFTKMSAKDIKAINKGIGVDNMHYLNDGLW 175
L +T VAIMAEGKQHAL +G KMSA+DI+ +NKGIG++N+HYLNDGLW
Sbjct: 121 AKL-YPAAVDTIVAIMAEGKQHALCVGVMKMSAEDIEKVNKGIGIENIHYLNDGLW 175
>sp|Q9CQ21|MCTS2_MOUSE Malignant T-cell-amplified sequence 2 OS=Mus musculus GN=Mcts2 PE=2
SV=1
Length = 181
Score = 209 bits (533), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 99/176 (56%), Positives = 130/176 (73%), Gaps = 2/176 (1%)
Query: 1 MFKKFSAEE-VSAQNQVKASVQRKIRQSIADEYPGLEPVLDDLLPKKSPLIVAKCQNHLN 59
MFKKF +E VS Q+K SV + I+ + +++PG+EP L+ ++PKK P+ + +C H+
Sbjct: 1 MFKKFDEKESVSNCIQLKTSVIKGIKSQLTEQFPGIEPWLNQIMPKKDPVKIVRCHEHME 60
Query: 60 LVLVNNVPLFFNIRDGPYMPTLRLLHQYPNIMKKLQVDRGAIKFVLSGANIMCPGLTSPG 119
++ VN LFF R GP+ PTLRLLH+YP I+ QVD+GAIKFVLSGANIMCPGLTSPG
Sbjct: 61 ILTVNGELLFFRQRKGPFYPTLRLLHKYPFILPHQQVDKGAIKFVLSGANIMCPGLTSPG 120
Query: 120 GSLDEEVGAETPVAIMAEGKQHALAIGFTKMSAKDIKAINKGIGVDNMHYLNDGLW 175
L +T VA+MAEGK+HAL +G KM+A DI+ INKGIG++N+HYLNDGLW
Sbjct: 121 AKL-YTAAVDTIVAVMAEGKEHALCVGVMKMAAADIEKINKGIGIENIHYLNDGLW 175
>sp|Q6DER1|MCTS1_XENTR Malignant T-cell-amplified sequence 1 OS=Xenopus tropicalis
GN=mcts1 PE=2 SV=1
Length = 181
Score = 207 bits (528), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 101/176 (57%), Positives = 130/176 (73%), Gaps = 2/176 (1%)
Query: 1 MFKKFSAEE-VSAQNQVKASVQRKIRQSIADEYPGLEPVLDDLLPKKSPLIVAKCQNHLN 59
MFKKF +E VS Q+K SV + I+ + D++P +E L+ ++PKK P+ + +C H+
Sbjct: 1 MFKKFDEKENVSNCIQLKTSVIKGIKNQLIDQFPVIEQWLNQIMPKKDPVKIVRCHEHIE 60
Query: 60 LVLVNNVPLFFNIRDGPYMPTLRLLHQYPNIMKKLQVDRGAIKFVLSGANIMCPGLTSPG 119
++ VN LFF R+GP+ PTLRLLH+YP I+ QVD+GAIKFVLSGANIMCPGLTSPG
Sbjct: 61 ILTVNGELLFFRQREGPFYPTLRLLHKYPFILPHQQVDKGAIKFVLSGANIMCPGLTSPG 120
Query: 120 GSLDEEVGAETPVAIMAEGKQHALAIGFTKMSAKDIKAINKGIGVDNMHYLNDGLW 175
L A+T VAIMAEGKQHAL +G KMSA DI+ +NKGIG++N+HYLNDGLW
Sbjct: 121 AKL-YPAAADTVVAIMAEGKQHALCVGVMKMSADDIEKVNKGIGIENIHYLNDGLW 175
>sp|Q6NRJ7|MCS1B_XENLA Malignant T-cell-amplified sequence 1-B OS=Xenopus laevis
GN=mcts1-b PE=2 SV=1
Length = 181
Score = 206 bits (524), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 101/176 (57%), Positives = 129/176 (73%), Gaps = 2/176 (1%)
Query: 1 MFKKFSAEE-VSAQNQVKASVQRKIRQSIADEYPGLEPVLDDLLPKKSPLIVAKCQNHLN 59
MFKKF +E VS Q+K SV + I+ + D++P +E L+ ++PKK P+ + +C H+
Sbjct: 1 MFKKFDDKENVSNCIQLKTSVIKGIKNQLIDQFPVIEQWLNQIMPKKDPVKIVRCHEHIE 60
Query: 60 LVLVNNVPLFFNIRDGPYMPTLRLLHQYPNIMKKLQVDRGAIKFVLSGANIMCPGLTSPG 119
++ VN LFF R+G + PTLRLLH+YP I+ QVD+GAIKFVLSGANIMCPGLTSPG
Sbjct: 61 ILTVNGELLFFRQREGSFYPTLRLLHKYPFILPHQQVDKGAIKFVLSGANIMCPGLTSPG 120
Query: 120 GSLDEEVGAETPVAIMAEGKQHALAIGFTKMSAKDIKAINKGIGVDNMHYLNDGLW 175
L AET VAIMAEGKQHAL +G KMSA DI+ +NKGIG++N+HYLNDGLW
Sbjct: 121 AKL-YPAAAETVVAIMAEGKQHALCVGVMKMSADDIEKVNKGIGIENIHYLNDGLW 175
>sp|Q5ZI42|MCTS1_CHICK Malignant T-cell-amplified sequence 1 OS=Gallus gallus GN=MCTS1
PE=2 SV=1
Length = 181
Score = 206 bits (523), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 100/176 (56%), Positives = 129/176 (73%), Gaps = 2/176 (1%)
Query: 1 MFKKFSAEE-VSAQNQVKASVQRKIRQSIADEYPGLEPVLDDLLPKKSPLIVAKCQNHLN 59
MFKKF +E VS Q+K SV + I+ + D++P +EP L+ ++PKK P+ + +C H+
Sbjct: 1 MFKKFDEKENVSNCIQLKTSVIKGIKNQLIDQFPVIEPWLNQIMPKKDPVKIVRCHEHIE 60
Query: 60 LVLVNNVPLFFNIRDGPYMPTLRLLHQYPNIMKKLQVDRGAIKFVLSGANIMCPGLTSPG 119
++ VN LFF R+G + PTLRLLH+YP I+ QVD+GAIKFVLSGANIMCPGLTSPG
Sbjct: 61 ILTVNGELLFFRQREGIFYPTLRLLHKYPFILPHQQVDKGAIKFVLSGANIMCPGLTSPG 120
Query: 120 GSLDEEVGAETPVAIMAEGKQHALAIGFTKMSAKDIKAINKGIGVDNMHYLNDGLW 175
L +T VAIMAEGKQHAL +G KMSA DI+ +NKGIG++N+HYLNDGLW
Sbjct: 121 AKL-YPAAVDTVVAIMAEGKQHALCVGVMKMSADDIEKVNKGIGIENIHYLNDGLW 175
>sp|Q4G009|MCTS1_RAT Malignant T-cell-amplified sequence 1 OS=Rattus norvegicus GN=Mcts1
PE=2 SV=1
Length = 182
Score = 204 bits (520), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 96/168 (57%), Positives = 126/168 (75%), Gaps = 1/168 (0%)
Query: 8 EEVSAQNQVKASVQRKIRQSIADEYPGLEPVLDDLLPKKSPLIVAKCQNHLNLVLVNNVP 67
E VS Q+K SV + I+ + +++PG+EP L+ ++PKK P+ + +C H+ ++ VN
Sbjct: 10 ENVSNCIQLKTSVIKGIKNQLLEQFPGIEPWLNQIMPKKDPVKIVRCHEHIEILTVNGEL 69
Query: 68 LFFNIRDGPYMPTLRLLHQYPNIMKKLQVDRGAIKFVLSGANIMCPGLTSPGGSLDEEVG 127
LFF R+GP+ PTLRLLH+YP I+ QVD+GAIKFVLSGANIMCPGLTSPG L
Sbjct: 70 LFFRQREGPFYPTLRLLHKYPFILPHQQVDKGAIKFVLSGANIMCPGLTSPGAKL-YPAA 128
Query: 128 AETPVAIMAEGKQHALAIGFTKMSAKDIKAINKGIGVDNMHYLNDGLW 175
+T VAIMAEGKQHAL +G KMSA+DI+ +NKGIG++N+HYLNDGLW
Sbjct: 129 VDTIVAIMAEGKQHALCVGVMKMSAEDIEKVNKGIGIENIHYLNDGLW 176
>sp|Q7ZV34|MCTS1_DANRE Malignant T-cell-amplified sequence 1 OS=Danio rerio GN=mcts1 PE=2
SV=1
Length = 181
Score = 202 bits (514), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 98/176 (55%), Positives = 129/176 (73%), Gaps = 2/176 (1%)
Query: 1 MFKKFSAEE-VSAQNQVKASVQRKIRQSIADEYPGLEPVLDDLLPKKSPLIVAKCQNHLN 59
MFKKF +E VS Q+K SV + I+ + D++P ++ L+ ++PKK P+ + +C H+
Sbjct: 1 MFKKFDEKENVSNCIQLKTSVIKGIKNQLLDQFPNIDDWLNQIMPKKDPVKIVRCHEHIE 60
Query: 60 LVLVNNVPLFFNIRDGPYMPTLRLLHQYPNIMKKLQVDRGAIKFVLSGANIMCPGLTSPG 119
++ VN LFF R+GP+ PTLRLLH+YP I+ QVD+GAIKFVLSGANIMCPGLTSPG
Sbjct: 61 ILTVNGELLFFRQREGPFYPTLRLLHKYPFILPHQQVDKGAIKFVLSGANIMCPGLTSPG 120
Query: 120 GSLDEEVGAETPVAIMAEGKQHALAIGFTKMSAKDIKAINKGIGVDNMHYLNDGLW 175
L ++T VAIMAEGKQHAL +G KMSA DI+ +N GIG++N+HYLNDGLW
Sbjct: 121 AKL-YPAESDTVVAIMAEGKQHALCVGVMKMSADDIEKVNMGIGIENVHYLNDGLW 175
>sp|Q86KL4|MCTS1_DICDI Malignant T-cell-amplified sequence 1 homolog OS=Dictyostelium
discoideum GN=mcts1 PE=3 SV=1
Length = 182
Score = 200 bits (509), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 101/176 (57%), Positives = 131/176 (74%), Gaps = 1/176 (0%)
Query: 1 MFKKFSAEEVS-AQNQVKASVQRKIRQSIADEYPGLEPVLDDLLPKKSPLIVAKCQNHLN 59
MFKK S + S NQ+K+S+QR I+ SI +YP L+ + +D+ PKK P++ KCQNH+N
Sbjct: 1 MFKKLSLKGSSNTNNQIKSSLQRNIKNSILAQYPKLKDIEEDVFPKKVPIVQVKCQNHIN 60
Query: 60 LVLVNNVPLFFNIRDGPYMPTLRLLHQYPNIMKKLQVDRGAIKFVLSGANIMCPGLTSPG 119
LVL+NN LFFN R+GPY PTLR LH+YPNI+ +QVD+GAIKFVL GANIMC GLTSPG
Sbjct: 61 LVLINNEVLFFNEREGPYYPTLRFLHKYPNILPHVQVDKGAIKFVLQGANIMCRGLTSPG 120
Query: 120 GSLDEEVGAETPVAIMAEGKQHALAIGFTKMSAKDIKAINKGIGVDNMHYLNDGLW 175
++ ++ + VA+MAEGK HA AIG KMS DI+ IN IG++N+HYL D L+
Sbjct: 121 AKMEVDLPVDAIVAVMAEGKDHASAIGVMKMSTNDIRTINNDIGINNIHYLGDSLY 176
>sp|Q75AA8|TMA20_ASHGO Translation machinery-associated protein 20 OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=TMA20 PE=3 SV=1
Length = 181
Score = 182 bits (462), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 90/182 (49%), Positives = 125/182 (68%), Gaps = 3/182 (1%)
Query: 1 MFKKFSAEEVSAQNQVKASVQRKIRQSIADEYPGLEPVLDDLLPKKSPLIVAKCQNHLNL 60
MFKKFS E++ + +VK SVQR ++ + +++P LE V+D+LLPKK+ L + KC + + L
Sbjct: 1 MFKKFSKEDIHTRTKVKTSVQRSLKSKLVEQFPKLEEVIDELLPKKTELQIIKCSDKIQL 60
Query: 61 VLVNNVPLFFNIRDGPYMPTLRLLHQYPNIMKKLQVDRGAIKFVLSGANIMCPGLTSPGG 120
V + LFF + +PTLR +H+YP +Q+DRGAIKFVLSGANIMCPGLTS G
Sbjct: 61 YAVGDEVLFFQ-KFEELIPTLRFVHKYPEAFPTIQIDRGAIKFVLSGANIMCPGLTSSGA 119
Query: 121 SLDEEVG--AETPVAIMAEGKQHALAIGFTKMSAKDIKAINKGIGVDNMHYLNDGLWKVS 178
+L E G ++ V + AE K++ALAIG MS +DIK+INKG GV+ +H+L D LW S
Sbjct: 120 ALPEAPGLAQDSIVVVNAENKENALAIGKLLMSTEDIKSINKGHGVETIHHLGDCLWNFS 179
Query: 179 WI 180
+
Sbjct: 180 LV 181
>sp|P87313|TMA20_SCHPO Translation machinery-associated protein 20 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=tma20 PE=3 SV=5
Length = 181
Score = 182 bits (461), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 87/178 (48%), Positives = 124/178 (69%), Gaps = 1/178 (0%)
Query: 1 MFKKF-SAEEVSAQNQVKASVQRKIRQSIADEYPGLEPVLDDLLPKKSPLIVAKCQNHLN 59
MFK+F S E++ +K+S+QR I+ + YP L+ V+D+L+PKKS L KC++ L
Sbjct: 1 MFKRFNSREDIKGTTPIKSSIQRGIKAKLVQAYPNLKQVIDELIPKKSQLTQIKCEDRLF 60
Query: 60 LVLVNNVPLFFNIRDGPYMPTLRLLHQYPNIMKKLQVDRGAIKFVLSGANIMCPGLTSPG 119
L +N + F DGP +P+LRL+H+ P+ +++VDRGAIKF+LSGANIM PGL S G
Sbjct: 61 LYTLNGEIILFQHFDGPIIPSLRLVHKCPDAFTQVRVDRGAIKFLLSGANIMIPGLVSKG 120
Query: 120 GSLDEEVGAETPVAIMAEGKQHALAIGFTKMSAKDIKAINKGIGVDNMHYLNDGLWKV 177
G+L +++ + V + AEGK+ AIG TKMSAK++K NKGIG++N+HYL D LWK
Sbjct: 121 GNLPDDIEKDQYVIVTAEGKEAPAAIGLTKMSAKEMKETNKGIGIENVHYLGDNLWKT 178
>sp|P89886|TMA20_YEAST Translation machinery-associated protein 20 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=TMA20 PE=1
SV=1
Length = 181
Score = 167 bits (423), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 85/180 (47%), Positives = 124/180 (68%), Gaps = 3/180 (1%)
Query: 1 MFKKFSAEEVSAQNQVKASVQRKIRQSIADEYPGLEPVLDDLLPKKSPLIVAKCQNHLNL 60
MFKKF+ E+V ++++VK+S+QR ++ + +YP +E V+D+L+PKKS + + KC++ + L
Sbjct: 1 MFKKFTREDVHSRSKVKSSIQRTLKAKLVKQYPKIEDVIDELIPKKSQIELIKCEDKIQL 60
Query: 61 VLVNNVPLFFNIRDGPYMPTLRLLHQYPNIMKKLQVDRGAIKFVLSGANIMCPGLTSPGG 120
V+ LFF D +P+L+L+H++P +QVDRGAIKFVLSGANIMCPGLTS G
Sbjct: 61 YSVDGEVLFFQKFD-ELIPSLKLVHKFPEAYPTVQVDRGAIKFVLSGANIMCPGLTSAGA 119
Query: 121 SLDEEVGAE--TPVAIMAEGKQHALAIGFTKMSAKDIKAINKGIGVDNMHYLNDGLWKVS 178
L G E T V I AE K++ALAIG M ++IK++NKG ++ +H+L D LW S
Sbjct: 120 DLPPAPGYEKGTIVVINAENKENALAIGELMMGTEEIKSVNKGHSIELIHHLGDPLWNFS 179
>sp|Q58827|Y1432_METJA Uncharacterized protein MJ1432 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ1432 PE=4 SV=1
Length = 162
Score = 80.1 bits (196), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 79/137 (57%), Gaps = 6/137 (4%)
Query: 39 LDDLLPKKSPLIVAKCQNHLNLVLVNNVPLFFNIRDGPYMPTLRLLHQYPNIMKKLQVDR 98
+D+++PKK + +A + ++LV+ P+ F +D +PTL+LL + + VD
Sbjct: 28 VDEIIPKKGNVEIA-ITDDFEIILVDKEPIAFK-KDDKVIPTLKLLLKSLPDKNLVVVDI 85
Query: 99 GAIKFVLSGANIMCPGLTSPGGSLDEEVGAETPVAIMAEGKQHALAIGFTKMSAKDIKAI 158
GAIKF+++GA++M PG+ DE + E V ++ E + + +G M+ K++K
Sbjct: 86 GAIKFLINGADVMAPGIVDA----DENIKEEDVVFVVDENHKKPICVGIALMNGKEMKEA 141
Query: 159 NKGIGVDNMHYLNDGLW 175
+KG + N+HY+ D +W
Sbjct: 142 DKGKAIKNLHYVGDKIW 158
>sp|Q61211|EIF2D_MOUSE Eukaryotic translation initiation factor 2D OS=Mus musculus
GN=Eif2d PE=2 SV=3
Length = 570
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 82/182 (45%), Gaps = 10/182 (5%)
Query: 1 MFKKFSAEEVSAQNQVKASVQRKIRQSIADEYPGL-EPVLDDLLPKKSPLIVAKCQNH-- 57
MF K A V + +K S +RK+R + +P L + +L+P K L V K H
Sbjct: 1 MFAK--AFRVKSNTAIKGSDRRKLRADVTAAFPALGTDQISELIPGKEELNVVKLYVHKG 58
Query: 58 --LNLVLVNNVPLFFNIRDGPYMPTLRLLHQYPNIMKKLQVDRGAIKFVLSGANIMCPGL 115
+ + P+ F + Y PT+ L YP+I+ ++ ++ GA++M PG+
Sbjct: 59 DSVTVYTSGGNPILFELEKNLY-PTVYTLWAYPDILPTFITWPLVLEKLVGGADLMLPGV 117
Query: 116 TSPGGSLDEEVGAETPVAIMAEGKQHALAIGFTKMSAKDIKAIN-KGIGVDNMHYLNDGL 174
P L +V AI G + +AIG MS + A KG GV +H D L
Sbjct: 118 VVPPTGL-PQVQQGDLCAIALVGNRAPVAIGVAAMSTAQMLASGLKGKGVSVLHTYQDHL 176
Query: 175 WK 176
W+
Sbjct: 177 WR 178
>sp|P41214|EIF2D_HUMAN Eukaryotic translation initiation factor 2D OS=Homo sapiens
GN=EIF2D PE=1 SV=3
Length = 584
Score = 61.2 bits (147), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 82/182 (45%), Gaps = 10/182 (5%)
Query: 1 MFKKFSAEEVSAQNQVKASVQRKIRQSIADEYPGL-EPVLDDLLPKKSPLIVAKCQNH-- 57
MF K A V + +K S +RK+R + +P L + +L+P K L + K H
Sbjct: 1 MFAK--AFRVKSNTAIKGSDRRKLRADVTTAFPTLGTDQVSELVPGKEELNIVKLYAHKG 58
Query: 58 --LNLVLVNNVPLFFNIRDGPYMPTLRLLHQYPNIMKKLQVDRGAIKFVLSGANIMCPGL 115
+ + + P+ F + Y PT+ L YP+++ ++ ++ GA++M PGL
Sbjct: 59 DAVTVYVSGGNPILFELEKNLY-PTVYTLWSYPDLLPTFTTWPLVLEKLVGGADLMLPGL 117
Query: 116 TSPGGSLDEEVGAETPVAIMAEGKQHALAIGFTKMSAKDIKAIN-KGIGVDNMHYLNDGL 174
P L +V AI G + +AIG MS ++ KG G +H D L
Sbjct: 118 VMPPAGL-PQVQKGDLCAISLVGNRAPVAIGVAAMSTAEMLTSGLKGRGFSVLHTYQDHL 176
Query: 175 WK 176
W+
Sbjct: 177 WR 178
>sp|Q5RA63|EIF2D_PONAB Eukaryotic translation initiation factor 2D OS=Pongo abelii
GN=EIF2D PE=2 SV=1
Length = 584
Score = 61.2 bits (147), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 82/182 (45%), Gaps = 10/182 (5%)
Query: 1 MFKKFSAEEVSAQNQVKASVQRKIRQSIADEYPGL-EPVLDDLLPKKSPLIVAKCQNH-- 57
MF K A V + +K S +RK+R + +P L + +L+P K L + K H
Sbjct: 1 MFAK--AFRVKSNTAIKGSDRRKLRADVTTAFPTLGTDQVSELVPGKEELNIVKLYAHKG 58
Query: 58 --LNLVLVNNVPLFFNIRDGPYMPTLRLLHQYPNIMKKLQVDRGAIKFVLSGANIMCPGL 115
+ + + P+ F + Y PT+ L YP+++ ++ ++ GA++M PGL
Sbjct: 59 DAVTVYVSGGNPILFELEKNLY-PTVYTLWSYPDLLPTFTTWPLVLEKLVGGADLMLPGL 117
Query: 116 TSPGGSLDEEVGAETPVAIMAEGKQHALAIGFTKMSAKDIKAIN-KGIGVDNMHYLNDGL 174
P L +V AI G + +AIG MS ++ KG G +H D L
Sbjct: 118 VMPPAGL-PQVQKGDLCAISLVGNRAPVAIGVAAMSTAEMLTSGLKGRGFSVLHTYQDHL 176
Query: 175 WK 176
W+
Sbjct: 177 WR 178
>sp|Q58CR3|EIF2D_BOVIN Eukaryotic translation initiation factor 2D OS=Bos taurus GN=EIF2D
PE=2 SV=1
Length = 579
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 87/183 (47%), Gaps = 12/183 (6%)
Query: 1 MFKKFSAEEVSAQNQVKASVQRKIRQSIADEYPGL-EPVLDDLLPKKSPLIVAKCQNH-- 57
MF K A V + +K S +RK+R +A +P L + +L+P K L + K H
Sbjct: 1 MFAK--AFRVKSNTAIKGSDRRKLRADVAAVFPTLGTDQVSELVPGKEELNIVKLYAHRG 58
Query: 58 --LNLVLVNNVPLFFNIRDGPYMPTLRLLHQYPNIMKKLQVDRGAIKFVLSGANIMCPGL 115
+ + + P+ F + Y PT+ L YP+++ ++ ++ GA++M PGL
Sbjct: 59 DAVTVYVSGGNPILFELEKNLY-PTVYTLWSYPDLLPTFTTWPLVLEKLVGGADLMLPGL 117
Query: 116 TSPGGSLDE-EVGAETPVAIMAEGKQHALAIGFTKMSAKDIKAIN-KGIGVDNMHYLNDG 173
P L + + G VA++ G + +A+G MS ++ A KG G +H D
Sbjct: 118 VVPPAGLPQVQKGDLCAVALV--GNRAPVAVGVAAMSTAEMLASGLKGRGFCVLHSYQDH 175
Query: 174 LWK 176
LW+
Sbjct: 176 LWR 178
>sp|P0CL18|EIF2D_RABIT Eukaryotic translation initiation factor 2D OS=Oryctolagus
cuniculus GN=EIF2D PE=1 SV=1
Length = 566
Score = 60.8 bits (146), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 84/182 (46%), Gaps = 10/182 (5%)
Query: 1 MFKKFSAEEVSAQNQVKASVQRKIRQSIADEYPGL-EPVLDDLLPKKSPLIVAKCQNH-- 57
MF K A V + +K S +RK+R +A +P L + +L+P K L K H
Sbjct: 1 MFAK--AFRVKSNTAIKGSDRRKLRADVAAAFPTLGTDQVSELVPGKEELNTVKLYAHRG 58
Query: 58 --LNLVLVNNVPLFFNIRDGPYMPTLRLLHQYPNIMKKLQVDRGAIKFVLSGANIMCPGL 115
+ + + P+ F + Y PT+ +L +P+++ ++ ++ GA++M PGL
Sbjct: 59 DAVTVYVSGGNPILFELEKNLY-PTVYMLWSHPDLLPTFTTWPLVLEKLVGGADLMLPGL 117
Query: 116 TSPGGSLDEEVGAETPVAIMAEGKQHALAIGFTKMSAKDIKAIN-KGIGVDNMHYLNDGL 174
P L +V AI G + +AIG MS +++ KG G +H D L
Sbjct: 118 VVPPAGL-PQVQKGDLCAIALVGNRAPVAIGVAAMSTEEMLTSGLKGRGFSVLHTYQDHL 176
Query: 175 WK 176
W+
Sbjct: 177 WR 178
>sp|Q5PPG7|EIF2D_RAT Eukaryotic translation initiation factor 2D OS=Rattus norvegicus
GN=Eif2d PE=2 SV=1
Length = 570
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 82/182 (45%), Gaps = 10/182 (5%)
Query: 1 MFKKFSAEEVSAQNQVKASVQRKIRQSIADEYPGL-EPVLDDLLPKKSPLIVAKCQNH-- 57
MF K A V + +K S +RK+R + +P L + +L+P K L V K H
Sbjct: 1 MFAK--AFRVKSNTAIKGSDRRKLRADVTVAFPTLGTDQVSELIPGKEELNVVKLYAHKG 58
Query: 58 --LNLVLVNNVPLFFNIRDGPYMPTLRLLHQYPNIMKKLQVDRGAIKFVLSGANIMCPGL 115
+ + P+ F + Y PT+ L +P+++ ++ ++ GA++M PG+
Sbjct: 59 DAVTVYTSGGNPILFELEKNLY-PTVYTLWSHPDLLPAFITWPLVLEKLVGGADLMLPGV 117
Query: 116 TSPGGSLDEEVGAETPVAIMAEGKQHALAIGFTKMSAKDIKAIN-KGIGVDNMHYLNDGL 174
P L +V AI G + +A+G MS + A KG G+ +H D L
Sbjct: 118 VVPPTGL-PQVQQGDLCAIALVGNRAPVAVGVAAMSTAQMLASGLKGKGISVLHTYQDHL 176
Query: 175 WK 176
W+
Sbjct: 177 WR 178
>sp|Q9LD90|CBF5_ARATH H/ACA ribonucleoprotein complex subunit 4 OS=Arabidopsis thaliana
GN=CBF5 PE=1 SV=1
Length = 565
Score = 36.6 bits (83), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 52/113 (46%), Gaps = 18/113 (15%)
Query: 59 NLVLVNNVP----LFFNIRDGPY-----MPTLRLLHQYPNIMKKLQVDRGAIKFVLSGAN 109
N+V +++V ++ N RD Y MP +L Y K+L V A+ + GA
Sbjct: 250 NMVTMHDVMDAQFVYDNSRDESYLRRVIMPLEMILTSY----KRLVVKDSAVNAICYGAK 305
Query: 110 IMCPGLTSPGGSLDEEVGAETPVAIMAEGKQHALAIGFTKMSAKDIKAINKGI 162
+M PGL +D VG E ++ K A+A+G +M+ + + G+
Sbjct: 306 LMIPGLLRFENDID--VGTE---VVLMTTKGEAIAVGIAEMTTSVMATCDHGV 353
>sp|Q04600|TMA64_YEAST Translation machinery-associated protein 64 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=TMA64 PE=1
SV=1
Length = 565
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 58/123 (47%), Gaps = 16/123 (13%)
Query: 64 NNVPLFFNIRDGPYM-PTLRLLHQYPNIMKKLQVDRGAI--KFVLSGANIMCPGLTSPGG 120
NN P+ F + + PT+ +YP ++ + + G + + + +GAN+M G P
Sbjct: 61 NNTPILFKEKHKEQLFPTVYSCWEYPALLP-IVLTHGFVIEEHLFNGANLMISGSIPP-- 117
Query: 121 SLDEEVGAETPVAIMA-EGKQHALAIGFTKMSAKDIKAINK-----GIGVDNMHYLNDGL 174
D T I + + + LAIG ++ D+ + +K G+ V +H+ NDGL
Sbjct: 118 -FDPRCKIGTLCGIASKQAPETVLAIGIVEL---DLPSFDKVIGETGVAVKIIHHFNDGL 173
Query: 175 WKV 177
KV
Sbjct: 174 SKV 176
>sp|Q57612|TRUB_METJA Probable tRNA pseudouridine synthase B OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=truB PE=1 SV=1
Length = 336
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 10/92 (10%)
Query: 91 MKKLQVDRGAIKFVLSGANIMCPGLT--SPGGSLDEEVGAETPVAIMAEGKQHALAIGFT 148
+KK+ V A+ + GA++ G+ S G E V ET K A+A+G
Sbjct: 248 LKKVVVKDSAVDAICHGADVYVRGIAKLSKGIGKGETVLVETL-------KGEAVAVGKA 300
Query: 149 KMSAKDIKAINKGIGVD-NMHYLNDGLWKVSW 179
M+ K+I +KG+ VD Y++ G + W
Sbjct: 301 LMNTKEILNADKGVAVDVERVYMDRGTYPRMW 332
>sp|O30001|TRUB_ARCFU Probable tRNA pseudouridine synthase B OS=Archaeoglobus fulgidus
(strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
100126) GN=truB PE=3 SV=1
Length = 325
Score = 31.2 bits (69), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
Query: 93 KLQVDRGAIKFVLSGANIMCPGLTSPGGSLDEEVGAETPVAIMAEGKQHALAIGFTKMSA 152
K+ + A+ + GAN+ G+ +++ V ++ VAI K +AIG M A
Sbjct: 238 KIVIKDSAVDAICHGANLSVRGV----AYVEKNVKKDSTVAIFT-LKNELVAIGRALMDA 292
Query: 153 KDIKAINKGIGVD 165
+DI + KGI D
Sbjct: 293 EDIYRLKKGIAAD 305
>sp|B5E808|SECA_GEOBB Protein translocase subunit SecA OS=Geobacter bemidjiensis (strain
Bem / ATCC BAA-1014 / DSM 16622) GN=secA PE=3 SV=1
Length = 958
Score = 30.4 bits (67), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 31/56 (55%), Gaps = 8/56 (14%)
Query: 21 QRKIRQSIADEYPGLEPVLDDLLPKKSPL--------IVAKCQNHLNLVLVNNVPL 68
++++ QS+ EYPG+ PV+ L ++ + ++A+ Q NL++ N P+
Sbjct: 552 EKELLQSLEREYPGIMPVVASCLKQEGEIDLEELEQQVLAEHQKQFNLLVEKNKPV 607
>sp|Q9V1A5|TRUB_PYRAB Probable tRNA pseudouridine synthase B OS=Pyrococcus abyssi (strain
GE5 / Orsay) GN=truB PE=1 SV=1
Length = 334
Score = 30.4 bits (67), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
Query: 91 MKKLQVDRGAIKFVLSGANIMCPGLTSPGGSLDEEVGAETPVAIMAEGKQHALAIGFTKM 150
+ K+ + A+ V GAN+ PG+ L+ + VAIM K +A+G M
Sbjct: 250 LPKIWIKDSAVAAVAHGANLTVPGIVK----LNAGIKKGDLVAIMTL-KDELVALGKAMM 304
Query: 151 SAKDIKAINKGIGVD 165
S +++ +KGI VD
Sbjct: 305 STQEMIERSKGIAVD 319
>sp|P60346|TRUB_NANEQ Probable tRNA pseudouridine synthase B OS=Nanoarchaeum equitans
(strain Kin4-M) GN=truB PE=3 SV=1
Length = 348
Score = 30.4 bits (67), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 44/91 (48%), Gaps = 6/91 (6%)
Query: 91 MKKLQVDRGAIKFVLSGANIMCPGLTSPGGSLDEEVGAETPVAIMAEGKQHALAIGFTKM 150
+KK+ + A+ ++ GAN+ PG+ ++ + G + + K +AIG M
Sbjct: 260 LKKIYILDSAVAAIVHGANLAVPGIAKLYSNIKK--GDLVSIHTL---KGELVAIGIALM 314
Query: 151 SAKDIKAINKGIGVD-NMHYLNDGLWKVSWI 180
+K++ +GI VD ++ GL+ W+
Sbjct: 315 DSKEMLEKKRGIAVDIERVFMKPGLYPKMWV 345
>sp|Q8TZ08|TRUB_METKA Probable tRNA pseudouridine synthase B OS=Methanopyrus kandleri
(strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938)
GN=truB PE=3 SV=1
Length = 338
Score = 30.4 bits (67), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 50/105 (47%), Gaps = 6/105 (5%)
Query: 76 PYMPTLRLLHQYPNIMKKLQVDRGAIKFVLSGANIMCPGLTSPGGSLDEEVGAETPVAIM 135
P +R + + + ++++ A+ + GAN+ PG+ +++ + VAI
Sbjct: 232 PLRHVVRPMEEGLEHLPRIEIRDTAVDAICHGANLAAPGIVR----VEKGIQPGDLVAIF 287
Query: 136 AEGKQHALAIGFTKMSAKDIKAINKGIGVDNMHYLND-GLWKVSW 179
K A+A+G K + K++ ++GI VD L + G + +W
Sbjct: 288 TL-KGEAVALGVAKATWKEMLHADRGIMVDTKRVLMEPGTYPKAW 331
>sp|Q6RHW0|K1C9_MOUSE Keratin, type I cytoskeletal 9 OS=Mus musculus GN=Krt9 PE=1 SV=2
Length = 743
Score = 30.0 bits (66), Expect = 8.4, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 23/35 (65%)
Query: 15 QVKASVQRKIRQSIADEYPGLEPVLDDLLPKKSPL 49
+VK +++ +RQ + + GL+ VLDDL+ KS L
Sbjct: 218 RVKLEMEQTLRQGVEGDINGLKKVLDDLVMAKSDL 252
>sp|Q8TRR5|TRUB_METAC Probable tRNA pseudouridine synthase B OS=Methanosarcina
acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 /
C2A) GN=truB PE=3 SV=1
Length = 338
Score = 30.0 bits (66), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 6/90 (6%)
Query: 91 MKKLQVDRGAIKFVLSGANIMCPGLTSPGGSLDEEVGAETPVAIMAEGKQHALAIGFTKM 150
+ K+ + A+ V SGA++ PG+TS SL AE +A + K +A+ +M
Sbjct: 245 LPKIILRDSAVDAVCSGASLAVPGITSLDSSL-----AEGELAALFTLKGELVALAKAEM 299
Query: 151 SAKDIKAINKGIGVDNMHYLND-GLWKVSW 179
+ ++I + GI + L + G + W
Sbjct: 300 NTEEILKASAGIAASPIRVLMEAGTYPKGW 329
>sp|Q1GQZ4|PROB_SPHAL Glutamate 5-kinase OS=Sphingopyxis alaskensis (strain DSM 13593 /
LMG 18877 / RB2256) GN=proB PE=3 SV=1
Length = 368
Score = 30.0 bits (66), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 21/30 (70%)
Query: 93 KLQVDRGAIKFVLSGANIMCPGLTSPGGSL 122
+L +D GA+K ++ GA+++ G+T+ GS
Sbjct: 279 RLTIDAGAVKALVGGASLLAAGVTAVSGSF 308
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.136 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,439,379
Number of Sequences: 539616
Number of extensions: 2813564
Number of successful extensions: 6800
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 6761
Number of HSP's gapped (non-prelim): 40
length of query: 180
length of database: 191,569,459
effective HSP length: 110
effective length of query: 70
effective length of database: 132,211,699
effective search space: 9254818930
effective search space used: 9254818930
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)