Query 030242
Match_columns 180
No_of_seqs 145 out of 851
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 17:20:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030242.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030242hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3r90_A Malignant T cell-amplif 100.0 1.5E-55 5E-60 349.4 12.4 177 1-178 1-178 (188)
2 3d79_A PUA domain, putative un 100.0 6.5E-45 2.2E-49 286.4 14.6 165 8-179 8-178 (179)
3 2cx0_A Hypothetical protein AP 100.0 2.8E-42 9.6E-47 273.1 13.6 157 12-178 14-179 (187)
4 1q7h_A Conserved hypothetical 100.0 2E-40 6.7E-45 254.6 14.3 152 10-178 1-152 (153)
5 1iq8_A Archaeosine tRNA-guanin 99.9 3.3E-25 1.1E-29 200.8 8.6 144 18-171 434-582 (582)
6 3zv0_C H/ACA ribonucleoprotein 99.9 1.2E-24 4.1E-29 171.7 6.2 138 29-178 17-162 (195)
7 2q07_A Uncharacterized protein 99.9 1.9E-23 6.6E-28 176.1 12.1 128 19-174 168-301 (306)
8 2p38_A Protein involved in rib 99.6 2.3E-16 7.7E-21 122.2 4.8 136 14-174 8-164 (166)
9 3u28_A H/ACA ribonucleoprotein 99.1 8E-11 2.7E-15 101.9 7.2 79 90-173 265-343 (400)
10 1sqw_A Saccharomyces cerevisia 98.9 5.5E-09 1.9E-13 81.9 10.6 147 15-171 3-170 (188)
11 2j5v_A Glutamate 5-kinase; pro 98.7 4.4E-08 1.5E-12 84.2 7.3 63 90-157 274-337 (367)
12 2aus_C Pseudouridine synthase; 98.6 6E-08 2.1E-12 82.4 8.1 78 91-173 250-327 (334)
13 2apo_A Probable tRNA pseudouri 98.5 1.9E-07 6.4E-12 80.0 7.8 79 90-173 268-346 (357)
14 1r3e_A TRNA pseudouridine synt 86.7 1.2 4.3E-05 37.0 6.0 53 90-148 228-280 (309)
15 3c0k_A UPF0064 protein YCCW; P 83.8 1.2 4.2E-05 37.5 4.8 54 91-149 2-56 (396)
16 1k8w_A TRNA pseudouridine synt 81.2 3.2 0.00011 34.8 6.3 47 91-148 264-310 (327)
17 2as0_A Hypothetical protein PH 71.1 5.5 0.00019 33.4 5.1 53 92-149 2-55 (396)
18 1sgv_A TRNA pseudouridine synt 62.4 11 0.00037 31.4 5.0 44 91-148 236-279 (316)
19 4dmg_A Putative uncharacterize 59.8 11 0.00039 31.8 4.9 51 91-149 5-56 (393)
20 2oka_A Hypothetical protein; P 41.3 42 0.0014 23.2 4.5 51 23-84 24-74 (104)
21 2p0g_A Selenoprotein W-related 38.0 48 0.0016 22.9 4.4 52 23-85 22-73 (105)
22 1hmj_A RPB5, protein (subunit 33.8 38 0.0013 22.2 3.1 31 88-138 31-61 (78)
23 1eik_A RNA polymerase subunit 33.0 21 0.00072 23.4 1.8 29 88-136 33-61 (77)
24 2ojl_A Hypothetical protein; B 28.5 62 0.0021 22.5 3.7 52 23-85 27-78 (108)
25 2hd9_A UPF0310 protein PH1033; 24.4 79 0.0027 22.8 3.9 26 124-149 33-67 (145)
26 4ayb_H DNA-directed RNA polyme 23.9 58 0.002 21.5 2.7 28 89-136 40-67 (84)
27 2fa8_A Hypothetical protein AT 23.7 1.3E+02 0.0045 20.6 4.7 52 22-84 25-76 (105)
28 3dex_A SAV_2001; alpha-beta pr 22.2 2E+02 0.0068 19.8 5.5 51 22-84 30-80 (107)
29 3tee_A Flagella basal BODY P-r 21.9 1.5E+02 0.0051 22.8 5.2 55 102-167 122-177 (219)
No 1
>3r90_A Malignant T cell-amplified sequence 1; structural genomics consortium, surface entropy reduction, S binding protein; 1.70A {Homo sapiens}
Probab=100.00 E-value=1.5e-55 Score=349.40 Aligned_cols=177 Identities=55% Similarity=1.004 Sum_probs=165.7
Q ss_pred CCCCC-CCCCcccccccCHHHHHHHHHHHHhHCCCCchhhcccCCCCCceEEEEeeCceEEEEECCEEEEEEecCCCcch
Q 030242 1 MFKKF-SAEEVSAQNQVKASVQRKIRQSIADEYPGLEPVLDDLLPKKSPLIVAKCQNHLNLVLVNNVPLFFNIRDGPYMP 79 (180)
Q Consensus 1 MFkK~-~~~~~k~~~~l~~sd~kkLr~~i~~~f~~~~~~~~~l~p~~~~v~~~k~~~~~~~y~~dg~pl~f~~~~~~~~P 79 (180)
||||+ +.+++|++++||+||+|+||+.+.+|||..++.+++|||+++.+++.|++++.++|++||+|+||+.++|.++|
T Consensus 1 MFkk~~~~~~vk~~~~lk~Sd~kkLr~~l~~qf~~~~~~~d~l~pkk~~v~~~k~~~~~~iy~~~~~pl~f~~~dg~l~P 80 (188)
T 3r90_A 1 MFKKFDEKENVSNCIQLKTSVIKGIKNQLIEQFPGIEPWLNQIMPKKDPVKIVRCHEHIEILTVNGELLFFRQREGPFYP 80 (188)
T ss_dssp CCTTCCHHHHEEEEEECCHHHHHHHHHHHHHHCGGGGGGHHHHSCTTSCEEEEEEGGGEEEEEETTEEEEEEETTCCCEE
T ss_pred CCCCCcCccCccccEeccHHHHHHHHHHHHHHcCCchhhHHhhCCCCCCEEEEEeCCeEEEEEECCEEEEEEeCCCeEec
Confidence 99996 23689999999999999999999999997656788999999999999999999999999999999998889999
Q ss_pred hhHhhhcCCCCCcEEEECcchhhhhhcCCcccCCcccCCCCCCCcCCCCCCeEEEeeCCCCeEEEEEEEecCHHHHhcCC
Q 030242 80 TLRLLHQYPNIMKKLQVDRGAIKFVLSGANIMCPGLTSPGGSLDEEVGAETPVAIMAEGKQHALAIGFTKMSAKDIKAIN 159 (180)
Q Consensus 80 Tl~~l~~~p~~~p~v~v~~~a~~~i~~GAdLm~pGV~~~~~~~~~~~~~Gd~V~V~~~~~~~~vaVG~~~~s~~~i~~~~ 159 (180)
|||+||++|.++|+|+||++|+++|++|||||+|||+...+.+ ++|++||+|+|++++++.++|||+++||++||.+..
T Consensus 81 Tl~~l~~~p~~lp~v~Vd~~av~~v~~GA~Lm~PGv~~~~~~~-~~i~~Gd~V~V~~~~~~~~vAVG~a~mss~e~~~~~ 159 (188)
T 3r90_A 81 TLRLLHKYPFILPHQQVDKGAIKFVLSGANIMCPGLTSPGAKL-YPAAVDTIVAIMAAGAAHALCVGVMKMSAEDIEKVN 159 (188)
T ss_dssp CHHHHHHSGGGSCEEEECGGGHHHHTTTCCEETHHHHSTTCBC-CCCCTTCEEEEEETTCSSCSEEEEESSCHHHHHHHC
T ss_pred hHHHHhhCcccCCEEEEChhHHHHhhcCCccccCeEEccCCCc-ccccCCCEEEEEECCCCcEEEEEEEEeCHHHHhhcC
Confidence 9999999999999999999999999999999999999965544 479999999999977899999999999999999899
Q ss_pred cceEEEEEEEEcccccCcc
Q 030242 160 KGIGVDNMHYLNDGLWKVS 178 (180)
Q Consensus 160 kG~av~v~H~~~D~Lw~~~ 178 (180)
+|+||+++|++||+||+++
T Consensus 160 kG~aV~v~H~~~D~LW~~~ 178 (188)
T 3r90_A 160 KGIGIENIHYLNDGLWHMK 178 (188)
T ss_dssp CSEEEEEEEETTSHHHHHC
T ss_pred CcEEEEEEEEECchhhhcC
Confidence 9999999999999999876
No 2
>3d79_A PUA domain, putative uncharacterized protein PH0734; unknown function; 1.73A {Pyrococcus horikoshii}
Probab=100.00 E-value=6.5e-45 Score=286.44 Aligned_cols=165 Identities=26% Similarity=0.448 Sum_probs=151.2
Q ss_pred CCcccccccCHHHHHHHHHHHHhHCCCCchhhcccCCCCCceEEEEeeCceEEEEECCEEEEEEecCCCcchhhHhhhcC
Q 030242 8 EEVSAQNQVKASVQRKIRQSIADEYPGLEPVLDDLLPKKSPLIVAKCQNHLNLVLVNNVPLFFNIRDGPYMPTLRLLHQY 87 (180)
Q Consensus 8 ~~~k~~~~l~~sd~kkLr~~i~~~f~~~~~~~~~l~p~~~~v~~~k~~~~~~~y~~dg~pl~f~~~~~~~~PTl~~l~~~ 87 (180)
+++|++++||+||+|+||+.+.+|||. +..++++|++..+++.|+.++.++|++||.|+||+. |+.++||+|++|++
T Consensus 8 ~~v~~~~~lk~sd~k~l~~~l~~qfg~--~~~~~l~p~k~~v~~~k~~~~~~~~~~dg~pl~f~~-dg~l~PTl~~l~~~ 84 (179)
T 3d79_A 8 MELKIKHPLSKKDVKEIIAQLSQMFGE--EIARKMLNKKDEVKVAEFDKTTEIILVNDKPMFIRR-KDLIFPLVIALYNL 84 (179)
T ss_dssp ----CCEECCHHHHHHHHHHHHHHHCH--HHHHHHCCTTSCEEEEEEETTEEEEEETTEEEEEEE-TTEEEECHHHHHHH
T ss_pred EeecccccCCHHHHHHHHHHHHHHhCC--CchHHhcCCCCcEEEEEcCCceEEEEECCEEEEEEe-CCeEeehHHHHHhC
Confidence 579999999999999999999999973 456789999999999999889999999999999995 67899999999999
Q ss_pred CCCC------cEEEECcchhhhhhcCCcccCCcccCCCCCCCcCCCCCCeEEEeeCCCCeEEEEEEEecCHHHHhcCCcc
Q 030242 88 PNIM------KKLQVDRGAIKFVLSGANIMCPGLTSPGGSLDEEVGAETPVAIMAEGKQHALAIGFTKMSAKDIKAINKG 161 (180)
Q Consensus 88 p~~~------p~v~v~~~a~~~i~~GAdLm~pGV~~~~~~~~~~~~~Gd~V~V~~~~~~~~vaVG~~~~s~~~i~~~~kG 161 (180)
|..+ ++|+||++|+++|++|||||+|||++ .+++|++||+|+|+.++++.++|+|++.+|++||....+|
T Consensus 85 p~~~p~~~~~~~v~vd~gA~~~l~~GasL~~~GV~~----~~g~f~~Gd~V~v~~~~~g~~iavG~~~~ss~e~~~~~kG 160 (179)
T 3d79_A 85 SDEEDLRKWPRRVVVDEGAVPHILNGADVMAPGIVD----ADEGIKEGDFVFVVEEKYGRPLAIGIALMSGKVMKEKNRG 160 (179)
T ss_dssp TTTSCGGGSTTEEEECGGGHHHHHTTCCEEGGGEEE----ECTTCCTTCEEEEEETTTCCEEEEEEESSCHHHHHHCSSS
T ss_pred chhccccccCCEEEECccHHHHHhCCCCcCCCcEEE----ccCCccCCCEEEEEECCCCeEEEEEEEEcCHHHHHhcCCc
Confidence 9988 99999999999999999999999998 6778999999999997689999999999999999999999
Q ss_pred eEEEEEEEEcccccCccc
Q 030242 162 IGVDNMHYLNDGLWKVSW 179 (180)
Q Consensus 162 ~av~v~H~~~D~Lw~~~~ 179 (180)
+||+++|++||+||+++.
T Consensus 161 ~av~~~H~~~D~Lw~~~~ 178 (179)
T 3d79_A 161 KAVKVIHHARDKIWEVTA 178 (179)
T ss_dssp EEEEEEEETTSHHHHHHC
T ss_pred eEEEEEEEeCCEEEEeec
Confidence 999999999999998753
No 3
>2cx0_A Hypothetical protein APE0525; PUA domain, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix} SCOP: b.122.1.1 d.17.6.4 PDB: 2cx1_A* 1zs7_A
Probab=100.00 E-value=2.8e-42 Score=273.09 Aligned_cols=157 Identities=22% Similarity=0.436 Sum_probs=145.4
Q ss_pred cccccCHHHHHHHHHHHHhHCCCCchhhcccCCCCCceEEEEe--eC-ceEEEEECCEEEEEEecCCCcchhhHhhhcCC
Q 030242 12 AQNQVKASVQRKIRQSIADEYPGLEPVLDDLLPKKSPLIVAKC--QN-HLNLVLVNNVPLFFNIRDGPYMPTLRLLHQYP 88 (180)
Q Consensus 12 ~~~~l~~sd~kkLr~~i~~~f~~~~~~~~~l~p~~~~v~~~k~--~~-~~~~y~~dg~pl~f~~~~~~~~PTl~~l~~~p 88 (180)
++++||+||+|+||+.+.+|||. +++|+++.++++|+ .+ +.++|++||.|+||+.+|+.++||+|++|++|
T Consensus 14 ~~~~lk~sd~k~Lr~~l~~qfg~------~l~p~k~~v~~~k~~t~~~~~~iy~~dg~pl~f~~~dg~l~PTl~~l~~~p 87 (187)
T 2cx0_A 14 EARALSKKERRSLLERLKPYYTR------IPFSEKADLRLVKARTDSGEYEIITVDGVPCLFEWSDGRIYPTLQCLKAFG 87 (187)
T ss_dssp EEEECCHHHHHHHHHHHTTTSSS------CCSCTTSCEEEEEEECSSCEEEEEEETTEEEEEECTTSCEEECHHHHHHHC
T ss_pred HhccCCHHHHHHHHHHHHHHcCc------cccCCCCcEEEEEecCCCccEEEEEECCEEEEEEeCCCeEEEEHHHHHhCC
Confidence 46789999999999999999982 57899999999999 44 78999999999999987788999999999999
Q ss_pred CC-Cc-EEEECcchhhhhhcCCcccCCcccCCCCCCCcCCCCCCeEEEeeCCCCeEEEEEEEecCHHHH----hcCCcce
Q 030242 89 NI-MK-KLQVDRGAIKFVLSGANIMCPGLTSPGGSLDEEVGAETPVAIMAEGKQHALAIGFTKMSAKDI----KAINKGI 162 (180)
Q Consensus 89 ~~-~p-~v~v~~~a~~~i~~GAdLm~pGV~~~~~~~~~~~~~Gd~V~V~~~~~~~~vaVG~~~~s~~~i----~~~~kG~ 162 (180)
.+ +| +|+||++|+++|++|||||+|||+. .+++|++||+|+|++++++.++|+|.+.+|++|| ..+.+|+
T Consensus 88 ~~~l~g~v~vd~gA~~al~~GasLl~~GV~~----~~g~f~~Gd~V~I~~~~~g~~iA~G~~~~ss~ei~~~~~~~~kG~ 163 (187)
T 2cx0_A 88 VDWLKGVVLVDKGAAIALAKGAHLMIPGVVG----VEGSFTRGDVVAALYHETRTPVMVGVAEVDSSALEKLYREKARGR 163 (187)
T ss_dssp STTSSEEEEECHHHHHHHHHTCCEEGGGEEE----EEECCCTTCEEEEEETTTTEEEEEEEESSCHHHHHHHHHHTCCSE
T ss_pred cccCCcEEEECccHHHHHhCCCCcCCCccEe----CCCCcCCCCEEEEEECCCCeEEEEEEEecCHHHHhHHHhccCCce
Confidence 87 78 9999999999999999999999998 6678999999999996679999999999999999 7789999
Q ss_pred EEEEEEEEcccccCcc
Q 030242 163 GVDNMHYLNDGLWKVS 178 (180)
Q Consensus 163 av~v~H~~~D~Lw~~~ 178 (180)
|++++|++||+||+++
T Consensus 164 av~v~H~~gD~Lw~~~ 179 (187)
T 2cx0_A 164 AVRRVHRLGDALWELA 179 (187)
T ss_dssp EEEEEEETTSHHHHHH
T ss_pred EEEEEEEcCCeEEhhh
Confidence 9999999999999864
No 4
>1q7h_A Conserved hypothetical protein; structural genomics, MCSG, PSI, PR structure initiative; 2.10A {Thermoplasma acidophilum dsm 1728} SCOP: b.122.1.1 d.17.6.2
Probab=100.00 E-value=2e-40 Score=254.61 Aligned_cols=152 Identities=20% Similarity=0.400 Sum_probs=140.4
Q ss_pred cccccccCHHHHHHHHHHHHhHCCCCchhhcccCCCCCceEEEEeeCceEEEEECCEEEEEEecCCCcchhhHhhhcCCC
Q 030242 10 VSAQNQVKASVQRKIRQSIADEYPGLEPVLDDLLPKKSPLIVAKCQNHLNLVLVNNVPLFFNIRDGPYMPTLRLLHQYPN 89 (180)
Q Consensus 10 ~k~~~~l~~sd~kkLr~~i~~~f~~~~~~~~~l~p~~~~v~~~k~~~~~~~y~~dg~pl~f~~~~~~~~PTl~~l~~~p~ 89 (180)
.|++++|++||+|+|++.+.+ || ++|+++.+.+.|+. +.++|++||.|+||+ ++.++||++++|++|.
T Consensus 1 ~k~~~~L~~se~k~l~~~l~~-~g--------~~~~~~~~~~~k~~-~~~~~~v~g~~l~f~--~g~~~ptl~~l~~l~~ 68 (153)
T 1q7h_A 1 MTSKHFISKKEAKRIWEQMSR-YG--------IDITGESLEVAAQK-SASAYYIGGKPMVFQ--AGDLIPSVYLLNYRNP 68 (153)
T ss_dssp --CCEECCHHHHHHHHHHHHT-TT--------CCCTTCCCEEEECS-SCEEEEETTEEEEEE--SSSEEECHHHHHHSCC
T ss_pred CCccccCCHHHHHHHHHHHHH-cC--------CccCCCcEEEEEeC-CcEEEEECCEEEEEE--CCeeeeehHHHhhCCc
Confidence 478999999999999999999 98 45667788888865 889999999999999 6789999999999999
Q ss_pred CCcEEEECcchhhhhhcCCcccCCcccCCCCCCCcCCCCCCeEEEeeCCCCeEEEEEEEecCHHHHhcCCcceEEEEEEE
Q 030242 90 IMKKLQVDRGAIKFVLSGANIMCPGLTSPGGSLDEEVGAETPVAIMAEGKQHALAIGFTKMSAKDIKAINKGIGVDNMHY 169 (180)
Q Consensus 90 ~~p~v~v~~~a~~~i~~GAdLm~pGV~~~~~~~~~~~~~Gd~V~V~~~~~~~~vaVG~~~~s~~~i~~~~kG~av~v~H~ 169 (180)
..|+|+||++|+++|++|||||+|||+. .+++|++||+|+|+++ ++.++|+|++.+|++||....+|+||+++|+
T Consensus 69 ~~~~v~vd~ga~~~l~~Ga~ll~~GV~~----~~~~~~~gd~V~V~~~-~g~~ia~G~~~~ss~e~~~~~~G~~v~v~h~ 143 (153)
T 1q7h_A 69 SRNIVTVDEGAEPHILNGSDLFAPGIVS----MDDSIRKGDMIFVKSS-KGYFIAVGMAEMDAGEVMATKRGKAARIIHF 143 (153)
T ss_dssp SSSEEEECTTTHHHHTTTCCEEGGGEEE----ECTTCCTTCEEEEEET-TSCEEEEEEESSCHHHHHHHCCSEEEEEEEC
T ss_pred cCCEEEECHhHHHHHHcCCCcCccccCc----ccCceeCCCEEEEEEC-CCCEEEEEEEecCHHHHHhcCCCeEEEEEEE
Confidence 9999999999999999999999999998 6778999999999995 7999999999999999998899999999999
Q ss_pred EcccccCcc
Q 030242 170 LNDGLWKVS 178 (180)
Q Consensus 170 ~~D~Lw~~~ 178 (180)
+||+||+++
T Consensus 144 ~~D~lw~~~ 152 (153)
T 1q7h_A 144 PGDELIRAF 152 (153)
T ss_dssp TTSHHHHHC
T ss_pred cCCEEEEec
Confidence 999999875
No 5
>1iq8_A Archaeosine tRNA-guanine transglycosylase; (alpha/beta)8 barrel, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii} SCOP: b.122.1.1 c.1.20.1 d.17.6.1 PDB: 1it7_A* 1it8_A* 1j2b_A
Probab=99.91 E-value=3.3e-25 Score=200.77 Aligned_cols=144 Identities=15% Similarity=0.140 Sum_probs=124.4
Q ss_pred HHHHHHHHHHHHhHCCCCchhhcccCCCCCceEEEEeeCceEEEEECCEEEEEEe-cCCCcchhhHhhhcC----CCCCc
Q 030242 18 ASVQRKIRQSIADEYPGLEPVLDDLLPKKSPLIVAKCQNHLNLVLVNNVPLFFNI-RDGPYMPTLRLLHQY----PNIMK 92 (180)
Q Consensus 18 ~sd~kkLr~~i~~~f~~~~~~~~~l~p~~~~v~~~k~~~~~~~y~~dg~pl~f~~-~~~~~~PTl~~l~~~----p~~~p 92 (180)
+.+.+.+|+.+.+|||. ..++++|+ ..+..+| ++++++|.+||+|++|.. +++.++||++++++. |...+
T Consensus 434 ~~~l~~i~~i~~~qFG~---~~~~l~~~-~~v~~~k-~~r~~~v~vdg~~l~~~~~~dg~~~ptl~g~~~~~~~~~~~~g 508 (582)
T 1iq8_A 434 EDAIKYVMAIAEYQFGE---GASRAFDD-AKVELSK-TGMPRQVKVNGKRLATVRADDGLLTLGIEGAKRLHRVLPYPRM 508 (582)
T ss_dssp TTHHHHHHHHHHHHHCT---TGGGGTTT-CEEEECS-SSCEEEEECSSSEEEEECTTTSCEEECHHHHHHHHHHSCTTTT
T ss_pred HHHHHHHHHHHHHHcCC---ChHHhCCC-cceeecc-cCceEEEEECCEEEEEEECCCCcEEecHHHHHHHHhhccCCCC
Confidence 34455666777999994 26778887 6777888 789999999999998875 578899999998765 33457
Q ss_pred EEEECcchhhhhhcCCcccCCcccCCCCCCCcCCCCCCeEEEeeCCCCeEEEEEEEecCHHHHhcCCcceEEEEEEEEc
Q 030242 93 KLQVDRGAIKFVLSGANIMCPGLTSPGGSLDEEVGAETPVAIMAEGKQHALAIGFTKMSAKDIKAINKGIGVDNMHYLN 171 (180)
Q Consensus 93 ~v~v~~~a~~~i~~GAdLm~pGV~~~~~~~~~~~~~Gd~V~V~~~~~~~~vaVG~~~~s~~~i~~~~kG~av~v~H~~~ 171 (180)
+|+||++|+++|++||+||+|||++ .+++|++||+|+|+++ ++.++|+|++.+|++||....+|+||+++|++.
T Consensus 509 ~v~VD~gA~~av~~GasLl~~GV~~----~~g~f~~Gd~V~V~~~-~g~~ia~G~a~~ss~ei~~~~kG~aV~v~~~~~ 582 (582)
T 1iq8_A 509 RVVVNKEAEPFARKGKDVFAKFVIF----ADPGIRPYDEVLVVNE-NDELLATGQALLSGREMIVFQYGRAVKVRKGVE 582 (582)
T ss_dssp EEEECTTTHHHHHTTCCEEGGGEEE----ECTTCCTTCEEEEECT-TCCEEEEEEESSCHHHHHHCCSSEEEEEEEECC
T ss_pred EEEECchHHHHHhcCCCcCCCceEe----cCCCcCCCCEEEEEeC-CCCEEEEEEEeeCHHHHHhcCCceEEEEEeccC
Confidence 9999999999999999999999999 6778999999999984 799999999999999999999999999999863
No 6
>3zv0_C H/ACA ribonucleoprotein complex subunit 4; cell cycle, RNP assembly, X-linked dyskeratosis congenita; 2.80A {Saccharomyces cerevisiae}
Probab=99.90 E-value=1.2e-24 Score=171.71 Aligned_cols=138 Identities=22% Similarity=0.348 Sum_probs=106.3
Q ss_pred HhHCCCCc-hhhcccCCCCCceEEEEeeCceEEEEECCEEEEEEecCCCc--chhhHhhhcCCCCCcEEEECcchhhhhh
Q 030242 29 ADEYPGLE-PVLDDLLPKKSPLIVAKCQNHLNLVLVNNVPLFFNIRDGPY--MPTLRLLHQYPNIMKKLQVDRGAIKFVL 105 (180)
Q Consensus 29 ~~~f~~~~-~~~~~l~p~~~~v~~~k~~~~~~~y~~dg~pl~f~~~~~~~--~PTl~~l~~~p~~~p~v~v~~~a~~~i~ 105 (180)
+.+||.++ +++.+|+|+++.+... .+....|.....|++|++. ..+ +|+.++|+.+ |+|+||++|+++|+
T Consensus 17 ~~~~psl~~~~~~~L~~nke~l~~~--~t~~~~~~~~~~~~k~~l~-~wI~~~P~E~aL~~~----g~VvVD~GAv~Al~ 89 (195)
T 3zv0_C 17 EAAGASTDTSEWPLLLKNFDKLLVR--SGHYTPIPAGSSPLKRDLK-SYISSGPLETLLVGY----KRIVVKDSAVNAVC 89 (195)
T ss_dssp ---------CCCCGGGSSGGGEEEC--CC---------CCCCCCHH-HHBCSSCGGGGGTTS----EEEEECHHHHHHHH
T ss_pred hhhcCCCCHHHHHHHcCCHHHheee--eeEEEecCCCCChHHHHHH-HHHhhccHHHHhccC----CeEEECHHHHHHHh
Confidence 45687665 5688899999877554 4446666655677877664 345 8998888854 78999999999999
Q ss_pred cCCcccCCcccCCCCCCCcCCCCCCeEEEeeCCCCeEEEEEEEecCHHHHhcCCcceEEEEEEEEcc-----cccCcc
Q 030242 106 SGANIMCPGLTSPGGSLDEEVGAETPVAIMAEGKQHALAIGFTKMSAKDIKAINKGIGVDNMHYLND-----GLWKVS 178 (180)
Q Consensus 106 ~GAdLm~pGV~~~~~~~~~~~~~Gd~V~V~~~~~~~~vaVG~~~~s~~~i~~~~kG~av~v~H~~~D-----~Lw~~~ 178 (180)
+||+||+|||+. ++++|++||+|.|++ .++.++|+|++.+|++||...++|+||+++|+++| .+|.++
T Consensus 90 ~GaSLl~pGV~~----v~g~F~~GD~V~V~~-~~G~~IAvG~a~~sS~Ei~~~~kG~aVkv~rVimd~~~Yp~~W~~g 162 (195)
T 3zv0_C 90 YGAKLMIPGLLR----YEEGIELYDEIVLIT-TKGEAIAVAIAQMSTVDLASCDHGVVASVKRCIMERDLYPRRWGLG 162 (195)
T ss_dssp TTCCEEGGGEEE----EETTCCTTCEEEEEC-TTCCEEEEEEESSCHHHHHHCSSSEEEEEEEECBCTTSSCCCCSSC
T ss_pred cCCCccCCCcEe----cCCCcCCCCEEEEEc-CCCCEEEEEEEcCCHHHHhhcCCcEEEEEEEEEeCCCCcCcccccC
Confidence 999999999999 677899999999998 46789999999999999999999999999999999 999886
No 7
>2q07_A Uncharacterized protein AF0587; monomer, structural genomics, PSI-2, protein structure initiative; 2.04A {Archaeoglobus fulgidus dsm 4304} SCOP: b.122.1.1 c.18.1.4 d.17.6.5
Probab=99.90 E-value=1.9e-23 Score=176.05 Aligned_cols=128 Identities=16% Similarity=0.226 Sum_probs=106.8
Q ss_pred HHHHHHHHHHHhHCCCCchhhcccCCCCCceEEEEeeCc--eEEEEECCEEEE-EEecCCCcchhh---HhhhcCCCCCc
Q 030242 19 SVQRKIRQSIADEYPGLEPVLDDLLPKKSPLIVAKCQNH--LNLVLVNNVPLF-FNIRDGPYMPTL---RLLHQYPNIMK 92 (180)
Q Consensus 19 sd~kkLr~~i~~~f~~~~~~~~~l~p~~~~v~~~k~~~~--~~~y~~dg~pl~-f~~~~~~~~PTl---~~l~~~p~~~p 92 (180)
.|...||+.+.+|||.. ||+ +++++ ..++++||.|++ |+.+++.++||+ ..|+++|. |
T Consensus 168 ~d~~~ir~i~~yqFG~~-------~~~-------~~~gr~p~~~v~vdg~~l~~~~~~dg~~~ptl~Ga~~l~~~~~--~ 231 (306)
T 2q07_A 168 LYRRILEHMLSYQFGIT-------WSG-------KVAGRYPELELLEGKKRLARVDRIYGMLDIYEKIAAYLLEKNI--Y 231 (306)
T ss_dssp HHHHHHHHHHHHHHSCC-------CCC-------EEESSTTSCEEEETTEEEEEEETTTTEEEECHHHHHHHHHTTC--S
T ss_pred HHHHHHHHHHHHHcCCC-------Ccc-------ccCCCCceEEEEECCEEEEEEEccCCeEEEcHHHHHHhhhCCC--C
Confidence 68999999999999941 554 44677 456789999997 677788899999 55676664 8
Q ss_pred EEEECcchhhhhhcCCcccCCcccCCCCCCCcCCCCCCeEEEeeCCCCeEEEEEEEecCHHHHhcCCcceEEEEEEEEcc
Q 030242 93 KLQVDRGAIKFVLSGANIMCPGLTSPGGSLDEEVGAETPVAIMAEGKQHALAIGFTKMSAKDIKAINKGIGVDNMHYLND 172 (180)
Q Consensus 93 ~v~v~~~a~~~i~~GAdLm~pGV~~~~~~~~~~~~~Gd~V~V~~~~~~~~vaVG~~~~s~~~i~~~~kG~av~v~H~~~D 172 (180)
+|+||+ ++++| |||+|||++ .++++++||+|+| . + ++++|||+|+||++||.+..+|+||+++|+++|
T Consensus 232 ~V~Vd~----~v~~G-~v~~pGv~~----~~~~i~~gd~V~V-~-~-g~~vavG~a~ms~~em~~~~kG~aV~v~~~~~~ 299 (306)
T 2q07_A 232 TVEIGD----FEVKG-TIFAGGVLR----ADEKIRPNDVVVF-H-N-SRIFGVGLAAMSGKEMAGSEKGIAINVKRKFSE 299 (306)
T ss_dssp EEEECS----SCCCS-EEEGGGEEE----ECTTCCTTCEEEE-E-C-SSCEEEEEESSCHHHHSCC--CEEEEEEEEEC-
T ss_pred EEEEcc----cccCC-ceeCCeeEe----CCCCcCCCCEEEE-E-C-CEEEEEEEEeeCHHHHhhcCCceEEEEEEEccC
Confidence 999998 88999 999999999 7788999999999 3 4 799999999999999999999999999999998
Q ss_pred cc
Q 030242 173 GL 174 (180)
Q Consensus 173 ~L 174 (180)
.-
T Consensus 300 ~~ 301 (306)
T 2q07_A 300 GH 301 (306)
T ss_dssp --
T ss_pred Cc
Confidence 63
No 8
>2p38_A Protein involved in ribosomal biogenesis; two alpha/beta domains, PUA domain, biosynthetic protein; 1.80A {Pyrococcus abyssi}
Probab=99.62 E-value=2.3e-16 Score=122.21 Aligned_cols=136 Identities=11% Similarity=0.109 Sum_probs=104.5
Q ss_pred cccCHHHHHHHHHHHHhHCCCCchhhcccCCCCCceEEEEeeCceEEEEECCEEE-----------EEE-------e---
Q 030242 14 NQVKASVQRKIRQSIADEYPGLEPVLDDLLPKKSPLIVAKCQNHLNLVLVNNVPL-----------FFN-------I--- 72 (180)
Q Consensus 14 ~~l~~sd~kkLr~~i~~~f~~~~~~~~~l~p~~~~v~~~k~~~~~~~y~~dg~pl-----------~f~-------~--- 72 (180)
-+|+++|.+.+.+.+.+ |+.. +...++..+.. ..++|++++.|+ .+- .
T Consensus 8 R~L~~~E~k~i~~~L~~-y~~~---------~~~~~~~~~~~-~~~Vy~v~~~~~~~~~~~~~~l~s~G~~~Gk~~~~~t 76 (166)
T 2p38_A 8 RRASSWELDLILKEAEK-YGEL---------LHEFFCVVEGK-YRDVYAVNEEVWKIIEDINMRPYSLGTFVGTIRVDEN 76 (166)
T ss_dssp EECCHHHHHHHHHHHHT-TEEE---------CCCCEEEEESS-SEEEEEECHHHHHHTTTCCCCGGGTEEEEEEEEECTT
T ss_pred ccCCHHHHHHHHHHHHH-hcCC---------CcccEEEEEcc-CcEEEEECcHHHHHhhccCccceEEEEEEEEEEeccc
Confidence 36899999999999995 5421 11335555543 568888888764 221 2
Q ss_pred cCCCcchhhHhhhcCCCCCcEEEECcchhhhhhcCCcccCCcccCCCCCCCcCCCCCCeEEEeeCCCCeEEEEEEEecCH
Q 030242 73 RDGPYMPTLRLLHQYPNIMKKLQVDRGAIKFVLSGANIMCPGLTSPGGSLDEEVGAETPVAIMAEGKQHALAIGFTKMSA 152 (180)
Q Consensus 73 ~~~~~~PTl~~l~~~p~~~p~v~v~~~a~~~i~~GAdLm~pGV~~~~~~~~~~~~~Gd~V~V~~~~~~~~vaVG~~~~s~ 152 (180)
.++.++||+.++...+.....|.|++++..++++|+|+|.|||.+ ++ +..||.|+|+.+ ++.|+|+|++++|
T Consensus 77 ~~~kf~pti~~l~~l~~~k~kV~V~~~ae~~flyG~dV~k~gI~~----~~--~~~~~~VvV~~~-~~~pLG~G~a~~s- 148 (166)
T 2p38_A 77 LVEKFYPNLEFFSLIKLEKNYVILGPKASFLFTTGKDAPKEAVRE----IK--WQGSKRVVVLND-LGDIIGIGLINPK- 148 (166)
T ss_dssp SCEEEEECHHHHTTEEECSSEEEECHHHHHHHHTTCCBCGGGEEE----EE--CSSCSEEEEECT-TSCEEEEEEECTT-
T ss_pred CCCeEEEehHHhhhccccccEEEECCcceEeeecCCCcchhcceE----Ee--ecCCCEEEEEEC-CCcEEEEEEEEEC-
Confidence 135699999888776544568999999999999999999999998 65 899999999985 8999999999998
Q ss_pred HHHhcCCcceEEEEEEEEcccc
Q 030242 153 KDIKAINKGIGVDNMHYLNDGL 174 (180)
Q Consensus 153 ~~i~~~~kG~av~v~H~~~D~L 174 (180)
.+|++|+.+|.+|-.|
T Consensus 149 ------~~gkvv~n~~dvGeYL 164 (166)
T 2p38_A 149 ------SDRRFIKNLKDVGEFL 164 (166)
T ss_dssp ------CSTTSEEEEEC-----
T ss_pred ------CCCEEEEEcccceeee
Confidence 7999999999998765
No 9
>3u28_A H/ACA ribonucleoprotein complex subunit 4; pseudouridine synthase, pseudouridylation, H/ACA RNA; 1.90A {Saccharomyces cerevisiae} PDB: 3uai_A
Probab=99.12 E-value=8e-11 Score=101.88 Aligned_cols=79 Identities=23% Similarity=0.391 Sum_probs=72.7
Q ss_pred CCcEEEECcchhhhhhcCCcccCCcccCCCCCCCcCCCCCCeEEEeeCCCCeEEEEEEEecCHHHHhcCCcceEEEEEEE
Q 030242 90 IMKKLQVDRGAIKFVLSGANIMCPGLTSPGGSLDEEVGAETPVAIMAEGKQHALAIGFTKMSAKDIKAINKGIGVDNMHY 169 (180)
Q Consensus 90 ~~p~v~v~~~a~~~i~~GAdLm~pGV~~~~~~~~~~~~~Gd~V~V~~~~~~~~vaVG~~~~s~~~i~~~~kG~av~v~H~ 169 (180)
.+|++.+++.+.+++++|+.|+.||+.. .+.+++.||.|++++ .+++++|||++.|++++|...++|++|++..+
T Consensus 265 ~lp~V~L~deaa~~V~NGq~L~~pgVl~----~~~~i~~gd~VvVvt-~kGelLAIG~A~mss~em~~~~~G~vvk~~rV 339 (400)
T 3u28_A 265 GYKRIVVKDSAVNAVCYGAKLMIPGLLR----YEEGIELYDEIVLIT-TKGEAIAVAIAQMSTVDLASCDHGVVASVKRC 339 (400)
T ss_dssp TSCEEEECHHHHHHHHHHSEEEGGGEEE----ECTTCCTTCEEEEEC-TTCCEEEEEEESSCHHHHHHCSSSEEEEEEEE
T ss_pred hCCccccCHHHHHHHHCcCccccCcccc----ccccCCCCCEEEEEe-CCCcEEEEEEEEeCHHHHhhcCCcEEEEEEEE
Confidence 3689999999999999999999999987 556788999999998 57899999999999999999999999999999
Q ss_pred Eccc
Q 030242 170 LNDG 173 (180)
Q Consensus 170 ~~D~ 173 (180)
+++.
T Consensus 340 ~m~~ 343 (400)
T 3u28_A 340 IMER 343 (400)
T ss_dssp CSCT
T ss_pred eecC
Confidence 9983
No 10
>1sqw_A Saccharomyces cerevisiae NIP7P homolog; PUA, unknown function; 1.90A {Homo sapiens} SCOP: b.122.1.1 d.17.6.3 PDB: 1t5y_A
Probab=98.95 E-value=5.5e-09 Score=81.87 Aligned_cols=147 Identities=17% Similarity=0.192 Sum_probs=102.9
Q ss_pred ccCHHHHHHHHHHHHhHCCCCchhhcccCCCCCceEEEEeeCceEEEEECC------------------EEE-EEEecCC
Q 030242 15 QVKASVQRKIRQSIADEYPGLEPVLDDLLPKKSPLIVAKCQNHLNLVLVNN------------------VPL-FFNIRDG 75 (180)
Q Consensus 15 ~l~~sd~kkLr~~i~~~f~~~~~~~~~l~p~~~~v~~~k~~~~~~~y~~dg------------------~pl-~f~~~~~ 75 (180)
+|+..|.+.+.+.+.+-.|. .+..|+...+.--+.+... .++|++.. ..+ -|+ .++
T Consensus 3 ~Lt~~E~~~vf~kL~~yiG~---n~~~li~~~~~~~~frl~~-~rVyyv~~~i~~~a~~i~r~~l~s~Gtc~Gkft-k~g 77 (188)
T 1sqw_A 3 PLTEEETRVMFEKIAKYIGE---NLQLLVDRPDGTYCFRLHN-DRVYYVSEKIMKLAANISGDKLVSLGTCFGKFT-KTH 77 (188)
T ss_dssp ECCHHHHHHHHHHHHHHHGG---GTHHHHEETTEEEEEEEET-TEEEEEEHHHHHTTTSSCHHHHHHHSEEEEEEC-TTS
T ss_pred CCCHHHHHHHHHHHHHHhcc---CHHHHhcCCCCceEEEecC-CEEEEECHHHHHHHhcCCcCCeeEeeeEEEEEe-cCC
Confidence 58899999999999866653 2444433111223444433 24443322 122 232 246
Q ss_pred CcchhhHhhhcC-CCCCcEEEECcchhhhhhcCCcccCCcccCCCCCCCcCCCCCCeEEEeeCCCCeEEEEEEEecCHHH
Q 030242 76 PYMPTLRLLHQY-PNIMKKLQVDRGAIKFVLSGANIMCPGLTSPGGSLDEEVGAETPVAIMAEGKQHALAIGFTKMSAKD 154 (180)
Q Consensus 76 ~~~PTl~~l~~~-p~~~p~v~v~~~a~~~i~~GAdLm~pGV~~~~~~~~~~~~~Gd~V~V~~~~~~~~vaVG~~~~s~~~ 154 (180)
.+.|++.++... |...-+|.+.+.+..+++.|.|++..||.. +++++++||.|+|+. .++.|+|+|++..|++|
T Consensus 78 kF~L~It~l~~La~~~~~kV~Vk~~~E~~flyG~nVfk~~V~~----i~e~i~~~~~VvV~n-~~d~pLG~G~a~~s~~e 152 (188)
T 1sqw_A 78 KFRLHVTALDYLAPYAKYKVWIKPGAEQSFLYGNHVLKSGLGR----ITENTSQYQGVVVYS-MADIPLGFGVAAKSTQD 152 (188)
T ss_dssp CEEECGGGHHHHGGGCSCEEEECHHHHHHHTTTCCEEGGGEEE----ECTTCCTTCEEEEEE-TTCCEEEEEEESSCHHH
T ss_pred cEEEchhHHHHhhhccCcEEEECCCceeeEEeccchhHHhhhh----cCCCCCCCCEEEEEe-CCCCEEEEEEeecCHHH
Confidence 788888554332 233468999999999999999999999999 889999999999999 66899999999999999
Q ss_pred HhcC-CcceEEEEEEEEc
Q 030242 155 IKAI-NKGIGVDNMHYLN 171 (180)
Q Consensus 155 i~~~-~kG~av~v~H~~~ 171 (180)
+... ..|+.|...-=+|
T Consensus 153 ~~~~~~~~~vv~~q~D~G 170 (188)
T 1sqw_A 153 CRKVDPMAIVVFHQADIG 170 (188)
T ss_dssp HHHSCTTSEEEEEEEEGG
T ss_pred HHhcCCCcEEEEEcccce
Confidence 9985 4566665544333
No 11
>2j5v_A Glutamate 5-kinase; proline biosynthesis, gamma glutamyl kinase, amino-acid biosynthesis, transferase, feedback regulation, PUA domain; HET: RGP; 2.5A {Escherichia coli} PDB: 2j5t_A* 2w21_A
Probab=98.65 E-value=4.4e-08 Score=84.20 Aligned_cols=63 Identities=17% Similarity=0.341 Sum_probs=57.5
Q ss_pred CCcEEEECcchhhhhh-cCCcccCCcccCCCCCCCcCCCCCCeEEEeeCCCCeEEEEEEEecCHHHHhc
Q 030242 90 IMKKLQVDRGAIKFVL-SGANIMCPGLTSPGGSLDEEVGAETPVAIMAEGKQHALAIGFTKMSAKDIKA 157 (180)
Q Consensus 90 ~~p~v~v~~~a~~~i~-~GAdLm~pGV~~~~~~~~~~~~~Gd~V~V~~~~~~~~vaVG~~~~s~~~i~~ 157 (180)
....|++|++|.++|. +|++||.+||++ +..+|++||.|.|+. .++.++|.|.+.+|++|+..
T Consensus 274 ~~G~v~vD~gA~~al~~~g~sLl~~Gi~~----v~g~F~~gd~V~i~~-~~g~~ia~G~~~y~s~e~~~ 337 (367)
T 2j5v_A 274 PAGEITVDEGATAAILERGSSLLPKGIKS----VTGNFSRGEVIRICN-LEGRDIAHGVSRYNSDALRR 337 (367)
T ss_dssp CSCEEEECHHHHHHHHHHCCCBCGGGEEE----EESCCCTTCEEEEEE-TTCCEEEEEECSSCHHHHHH
T ss_pred CCCEEEECcCHHHHHHhCCCccCCcccEE----EECcccCCCEEEEEC-CCCCEEEEEEecCCHHHHHH
Confidence 4569999999999997 799999999999 777999999999999 47899999999999999864
No 12
>2aus_C Pseudouridine synthase; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_A 3lwo_A* 3lwq_A* 3lwp_A 3lwv_A 3hax_A* 2hvy_A* 3hay_A* 2ey4_A 2rfk_A 3mqk_A 3hjw_A* 3hjy_A
Probab=98.65 E-value=6e-08 Score=82.40 Aligned_cols=78 Identities=29% Similarity=0.425 Sum_probs=69.6
Q ss_pred CcEEEECcchhhhhhcCCcccCCcccCCCCCCCcCCCCCCeEEEeeCCCCeEEEEEEEecCHHHHhcCCcceEEEEEEEE
Q 030242 91 MKKLQVDRGAIKFVLSGANIMCPGLTSPGGSLDEEVGAETPVAIMAEGKQHALAIGFTKMSAKDIKAINKGIGVDNMHYL 170 (180)
Q Consensus 91 ~p~v~v~~~a~~~i~~GAdLm~pGV~~~~~~~~~~~~~Gd~V~V~~~~~~~~vaVG~~~~s~~~i~~~~kG~av~v~H~~ 170 (180)
+|.+.+++.+.+++++|+.|+.||+.. .++++..|+.|.|++ .++.++|||.+.+|+++|....+|.++++.+.+
T Consensus 250 ~p~V~L~de~a~~V~nGq~L~~~gv~~----~~~~i~~gd~V~V~~-~~G~fLAIGe~~~s~~e~~~~~~G~~vKp~rV~ 324 (334)
T 2aus_C 250 LPKIWIKDSAVAAVAHGANLTVPGIVK----LNAGIKKGDLVAIMT-LKDELVALGKAMMSTQEMIERSKGIAVDVEKVF 324 (334)
T ss_dssp SCEEEECHHHHHHHHTTCCEEGGGEEE----EETTCCTTCEEEEEE-TTCCEEEEEEESSCHHHHHHCSSSEEEEEEEEC
T ss_pred ccEEEECHHHHHHHHCCCccccCcccc----cccccCCCCEEEEEe-cCCeEEEEEEeccCchhccccCCCeEEEEEEEe
Confidence 799999999999999999999999865 445678899999987 567999999999999999999999999999998
Q ss_pred ccc
Q 030242 171 NDG 173 (180)
Q Consensus 171 ~D~ 173 (180)
++.
T Consensus 325 ~~~ 327 (334)
T 2aus_C 325 MPR 327 (334)
T ss_dssp SCT
T ss_pred eCC
Confidence 763
No 13
>2apo_A Probable tRNA pseudouridine synthase B; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: b.122.1.1 d.265.1.2
Probab=98.53 E-value=1.9e-07 Score=79.96 Aligned_cols=79 Identities=28% Similarity=0.422 Sum_probs=69.3
Q ss_pred CCcEEEECcchhhhhhcCCcccCCcccCCCCCCCcCCCCCCeEEEeeCCCCeEEEEEEEecCHHHHhcCCcceEEEEEEE
Q 030242 90 IMKKLQVDRGAIKFVLSGANIMCPGLTSPGGSLDEEVGAETPVAIMAEGKQHALAIGFTKMSAKDIKAINKGIGVDNMHY 169 (180)
Q Consensus 90 ~~p~v~v~~~a~~~i~~GAdLm~pGV~~~~~~~~~~~~~Gd~V~V~~~~~~~~vaVG~~~~s~~~i~~~~kG~av~v~H~ 169 (180)
.+|.+.+++.+++.|++|+.|+.||+.. .+.++..|+.|.+++ .++.++|||.+.+++++|....+|.+++...+
T Consensus 268 ~lP~v~l~~~~~~~i~nG~~L~~pgi~~----~~~~i~~gd~V~v~~-~~G~flAIGea~~~~~ei~~~~kG~vvKp~rV 342 (357)
T 2apo_A 268 HLKKVVVKDSAVDAICHGADVYVRGIAK----LSKGIGKGETVLVET-LKGEAVAVGKALMNTKEILNADKGVAVDVERV 342 (357)
T ss_dssp TSEEEEECHHHHHHHHTTCCEEGGGEEE----EETTCCTTCEEEEEC-TTSCEEEEEEESSCHHHHHHCSSSEEEEEEEE
T ss_pred cCcEEEECHHHHHHHhCcCccCCCcccc----cccccCCCCeEEEEc-CCCEEEEEEEeccccccccccCCCeEEEEEEE
Confidence 3699999999999999999999999864 334577889999987 56899999999999999999999999999999
Q ss_pred Eccc
Q 030242 170 LNDG 173 (180)
Q Consensus 170 ~~D~ 173 (180)
+.+.
T Consensus 343 f~~~ 346 (357)
T 2apo_A 343 YMDR 346 (357)
T ss_dssp CSCT
T ss_pred eeCC
Confidence 8763
No 14
>1r3e_A TRNA pseudouridine synthase B; RNA modification, pseudouridylation, lyase-RNA complex; HET: FHU; 2.10A {Thermotoga maritima} SCOP: b.122.1.1 d.265.1.2 PDB: 1ze2_A* 2ab4_A* 1ze1_A
Probab=86.68 E-value=1.2 Score=36.98 Aligned_cols=53 Identities=17% Similarity=0.229 Sum_probs=39.4
Q ss_pred CCcEEEECcchhhhhhcCCcccCCcccCCCCCCCcCCCCCCeEEEeeCCCCeEEEEEEE
Q 030242 90 IMKKLQVDRGAIKFVLSGANIMCPGLTSPGGSLDEEVGAETPVAIMAEGKQHALAIGFT 148 (180)
Q Consensus 90 ~~p~v~v~~~a~~~i~~GAdLm~pGV~~~~~~~~~~~~~Gd~V~V~~~~~~~~vaVG~~ 148 (180)
.+|.+.+++.....+++|+.+..+++.. +..+..|+.+.++. .++.++|+|..
T Consensus 228 ~~p~v~l~~~~~~~~~~G~~l~~~~~~~-----~~~~~~~~~~~~~~-~~g~~~ai~~~ 280 (309)
T 1r3e_A 228 WLPRVVVHQESTKMILNGSQIHLEMLKE-----WDGFKKGEVVRVFN-EEGRLLALAEA 280 (309)
T ss_dssp TSCEEECCTTTHHHHTTTCCEESSSCCE-----ECCCCTTCEEEEEC-SSSCEEEEEEE
T ss_pred CCCeEEeCHHHHHHHHCcCcccCCcccc-----cccccCCCEEEEEc-CCCeEEEEEEE
Confidence 4799999999999999999998776420 01123355677776 56789999987
No 15
>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}
Probab=83.77 E-value=1.2 Score=37.48 Aligned_cols=54 Identities=15% Similarity=0.211 Sum_probs=43.7
Q ss_pred CcEEEECcchhhhhhcCCc-ccCCcccCCCCCCCcCCCCCCeEEEeeCCCCeEEEEEEEe
Q 030242 91 MKKLQVDRGAIKFVLSGAN-IMCPGLTSPGGSLDEEVGAETPVAIMAEGKQHALAIGFTK 149 (180)
Q Consensus 91 ~p~v~v~~~a~~~i~~GAd-Lm~pGV~~~~~~~~~~~~~Gd~V~V~~~~~~~~vaVG~~~ 149 (180)
+++|+++.+..+.+.+|-. ++..-|.. .+.+++.|++|.|.+ .++.++++|...
T Consensus 2 ~~~~~l~~~~~~~~~~~~pwv~~~~i~~----~~~~~~~g~~v~v~~-~~g~~l~~G~~~ 56 (396)
T 3c0k_A 2 SVRLVLAKGREKSLLRRHPWVFSGAVAR----MEGKASLGETIDIVD-HQGKWLARGAYS 56 (396)
T ss_dssp CCEEEECTTCCHHHHTTCSEEEGGGEEE----EESCCCTTCEEEEEC-TTCCEEEEEEEC
T ss_pred ceEEEECchHHHHHhcCCCeEEhhHhhc----ccCCCCCCCEEEEEc-CCCCEEEEEEEC
Confidence 4578899999999999987 67777765 445689999999987 667888998764
No 16
>1k8w_A TRNA pseudouridine synthase B; protein-RNA complex, T stem-loop, lyase/RNA complex; HET: FHU; 1.85A {Escherichia coli} SCOP: b.122.1.1 d.265.1.2 PDB: 1zl3_A* 1r3f_A
Probab=81.24 E-value=3.2 Score=34.75 Aligned_cols=47 Identities=11% Similarity=0.146 Sum_probs=36.3
Q ss_pred CcEEEECcchhhhhhcCCcccCCcccCCCCCCCcCCCCCCeEEEeeCCCCeEEEEEEE
Q 030242 91 MKKLQVDRGAIKFVLSGANIMCPGLTSPGGSLDEEVGAETPVAIMAEGKQHALAIGFT 148 (180)
Q Consensus 91 ~p~v~v~~~a~~~i~~GAdLm~pGV~~~~~~~~~~~~~Gd~V~V~~~~~~~~vaVG~~ 148 (180)
+|.+.+++.....+++|+.|..+++. .++.|.++...++.++|+|..
T Consensus 264 lp~v~l~~~~~~~l~~G~~l~~~~~~-----------~~~~v~v~~~~~g~~lai~~~ 310 (327)
T 1k8w_A 264 YPVVNLPLTSSVYFKNGNPVRTSGAP-----------LEGLVRVTEGENGKFIGMGEI 310 (327)
T ss_dssp SCEEEECHHHHHHHTTTCCBCCSSCC-----------SSSEEEEEETTTTEEEEEEEE
T ss_pred CCEEEeCHHHHHHHhCcCccCCCCCC-----------CCCeEEEEECCCCEEEEEEEE
Confidence 79999999999999999998766531 134577772256789999986
No 17
>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51
Probab=71.11 E-value=5.5 Score=33.36 Aligned_cols=53 Identities=19% Similarity=0.322 Sum_probs=41.3
Q ss_pred cEEEECcchhhhhhcCCc-ccCCcccCCCCCCCcCCCCCCeEEEeeCCCCeEEEEEEEe
Q 030242 92 KKLQVDRGAIKFVLSGAN-IMCPGLTSPGGSLDEEVGAETPVAIMAEGKQHALAIGFTK 149 (180)
Q Consensus 92 p~v~v~~~a~~~i~~GAd-Lm~pGV~~~~~~~~~~~~~Gd~V~V~~~~~~~~vaVG~~~ 149 (180)
+.|++++++.+.|.+|.. ++.-.+.. .+.++..|++|.|++ .++.++++|...
T Consensus 2 ~~v~l~~~~~~~l~~g~pw~yrn~i~~----~~~~~~~g~~v~v~~-~~g~~l~~G~~~ 55 (396)
T 2as0_A 2 ARVVVDAQAARAIGKGAMIVFKKGVVR----VEGDIKPGDIVEVYT-RGGKFLGKGFAN 55 (396)
T ss_dssp CEEEECHHHHHHHHTTCCEEEGGGEEE----EESCCCTTCEEEEEE-TTCCEEEEEEEC
T ss_pred ceEEECHhHHHHHHcCCcEEEHHHccc----cCCCCCCCCEEEEEc-CCCCEEEEEEEC
Confidence 468899999999998875 66666655 334578899999998 457888888764
No 18
>1sgv_A TRNA pseudouridine synthase B; hinged motion, tRNA modification, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} SCOP: b.122.1.1 d.265.1.2
Probab=62.40 E-value=11 Score=31.39 Aligned_cols=44 Identities=9% Similarity=0.129 Sum_probs=32.1
Q ss_pred CcEEEECcchhhhhhcCCcccCCcccCCCCCCCcCCCCCCeEEEeeCCCCeEEEEEEE
Q 030242 91 MKKLQVDRGAIKFVLSGANIMCPGLTSPGGSLDEEVGAETPVAIMAEGKQHALAIGFT 148 (180)
Q Consensus 91 ~p~v~v~~~a~~~i~~GAdLm~pGV~~~~~~~~~~~~~Gd~V~V~~~~~~~~vaVG~~ 148 (180)
+|.+.+++.....+++|+.|..++. ++.+.++. .++.++|+|..
T Consensus 236 ~p~v~l~~~~~~~l~~G~~l~~~~~-------------~~~~~~~~-~~g~~lai~~~ 279 (316)
T 1sgv_A 236 FARRDLTAAEASAAANGRSLPAVGI-------------DGVYAACD-ADGRVIALLRD 279 (316)
T ss_dssp SEEEECCHHHHHHHHTTCCCBCCCC-------------CSCEEEEC-TTSCEEEEEEE
T ss_pred CCeEEeCHHHHHHHHCcCcccCCCC-------------CCeEEEEC-CCCEEEEEEEE
Confidence 6899999999999999998865431 12355554 45678888865
No 19
>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}
Probab=59.81 E-value=11 Score=31.79 Aligned_cols=51 Identities=16% Similarity=0.157 Sum_probs=38.8
Q ss_pred CcEEEECcchhhhhhcCCccc-CCcccCCCCCCCcCCCCCCeEEEeeCCCCeEEEEEEEe
Q 030242 91 MKKLQVDRGAIKFVLSGANIM-CPGLTSPGGSLDEEVGAETPVAIMAEGKQHALAIGFTK 149 (180)
Q Consensus 91 ~p~v~v~~~a~~~i~~GAdLm-~pGV~~~~~~~~~~~~~Gd~V~V~~~~~~~~vaVG~~~ 149 (180)
+++|++..+..+.|.+|-... .--|.. .+.+ ||+|.|++ .++.++|+|...
T Consensus 5 ~~~~~l~~~~~~~~~~g~pwi~~~~i~~----~~~~---G~~v~v~~-~~g~~lg~g~~~ 56 (393)
T 4dmg_A 5 VLRLVVKAGKERKLRNFYPNLYRDEIAA----PPEG---VGVAEAVD-AEGHFLAVGYYD 56 (393)
T ss_dssp CCEEEECTTCCHHHHTTCCEECGGGEEE----CCSS---SEEEEEEC-TTCCEEEEEEEC
T ss_pred CcEEEECcchHHHHhcCCCEEEHHHhcC----cCCC---CCEEEEEc-CCCCEEEEEEEC
Confidence 678999999999999998644 444444 2222 99999998 568999998773
No 20
>2oka_A Hypothetical protein; PAR82, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.50A {Pseudomonas aeruginosa} PDB: 2obk_A
Probab=41.29 E-value=42 Score=23.18 Aligned_cols=51 Identities=14% Similarity=0.230 Sum_probs=34.1
Q ss_pred HHHHHHHhHCCCCchhhcccCCCCCceEEEEeeCceEEEEECCEEEEEEecCCCcchhhHhh
Q 030242 23 KIRQSIADEYPGLEPVLDDLLPKKSPLIVAKCQNHLNLVLVNNVPLFFNIRDGPYMPTLRLL 84 (180)
Q Consensus 23 kLr~~i~~~f~~~~~~~~~l~p~~~~v~~~k~~~~~~~y~~dg~pl~f~~~~~~~~PTl~~l 84 (180)
.+.+++..+|+. .+. .++....++..-++++||.++|=+..++. ||...-|
T Consensus 24 ~laqeLl~tF~~---~l~-------~v~l~P~~~G~FEV~vng~lV~SKk~~gg-FPe~~eL 74 (104)
T 2oka_A 24 WLAQELLSTFAD---DLG-------KVCLEPGTGGVFRITCDGVQVWERKADGG-FPEAKAL 74 (104)
T ss_dssp HHHHHHHHHSTT---TCS-------EEEEEEECTTCEEEEETTEEEEEHHHHTS-CCCHHHH
T ss_pred HHHHHHHHHcCc---ccc-------eEEEEeCCCceEEEEECCEEEEEEecCCC-CCCHHHH
Confidence 478889999984 121 35555555666777899999986665444 6766544
No 21
>2p0g_A Selenoprotein W-related protein; VCR75, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Vibrio cholerae}
Probab=38.04 E-value=48 Score=22.90 Aligned_cols=52 Identities=12% Similarity=0.243 Sum_probs=34.1
Q ss_pred HHHHHHHhHCCCCchhhcccCCCCCceEEEEeeCceEEEEECCEEEEEEecCCCcchhhHhhh
Q 030242 23 KIRQSIADEYPGLEPVLDDLLPKKSPLIVAKCQNHLNLVLVNNVPLFFNIRDGPYMPTLRLLH 85 (180)
Q Consensus 23 kLr~~i~~~f~~~~~~~~~l~p~~~~v~~~k~~~~~~~y~~dg~pl~f~~~~~~~~PTl~~l~ 85 (180)
.+.+++..+|+. .+. .+++...++..-++++||.++|=+..++. ||...-|.
T Consensus 22 ~laqeLl~tF~~---~l~-------~v~l~P~~~G~FEV~vng~lV~SKk~~gg-FPe~~eLk 73 (105)
T 2p0g_A 22 WLSQELLHTFSE---EIE-------YVALHPDTGGRFEIFCNGVQIWERKQEGG-FPEAKVLK 73 (105)
T ss_dssp HHHHHHHHHTTT---TEE-------EEEEEEESTTCEEEEETTEEEEEHHHHTS-CCCHHHHH
T ss_pred HHHHHHHHHcCc---ccc-------eEEEEeCCCceEEEEECCEEEEEEecCCC-CCCHHHHH
Confidence 477889999984 122 24555445666677899999986665444 67765443
No 22
>1hmj_A RPB5, protein (subunit H); RNA polymerase, archaea; NMR {Methanocaldococcus jannaschii} SCOP: d.78.1.1
Probab=33.79 E-value=38 Score=22.24 Aligned_cols=31 Identities=13% Similarity=0.146 Sum_probs=24.0
Q ss_pred CCCCcEEEECcchhhhhhcCCcccCCcccCCCCCCCcCCCCCCeEEEeeCC
Q 030242 88 PNIMKKLQVDRGAIKFVLSGANIMCPGLTSPGGSLDEEVGAETPVAIMAEG 138 (180)
Q Consensus 88 p~~~p~v~v~~~a~~~i~~GAdLm~pGV~~~~~~~~~~~~~Gd~V~V~~~~ 138 (180)
+.-+|++...|++++++ ++++||+|-|.-.+
T Consensus 31 ~~qLPrI~~~DPvar~~--------------------G~k~GdVvkI~R~S 61 (78)
T 1hmj_A 31 IQQLPKIYEDDPVIQEI--------------------GAKEGDVVRVIRKS 61 (78)
T ss_pred HHHCCeeeCcCHhhHHh--------------------CCCCCCEEEEEECC
Confidence 34589999999999887 45779999886633
No 23
>1eik_A RNA polymerase subunit RPB5; RPBH, OCSP, NESG, protein structure initiative, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: d.78.1.1
Probab=33.05 E-value=21 Score=23.43 Aligned_cols=29 Identities=17% Similarity=0.241 Sum_probs=23.4
Q ss_pred CCCCcEEEECcchhhhhhcCCcccCCcccCCCCCCCcCCCCCCeEEEee
Q 030242 88 PNIMKKLQVDRGAIKFVLSGANIMCPGLTSPGGSLDEEVGAETPVAIMA 136 (180)
Q Consensus 88 p~~~p~v~v~~~a~~~i~~GAdLm~pGV~~~~~~~~~~~~~Gd~V~V~~ 136 (180)
+.-+|++...|++++++ ++++||+|-|.-
T Consensus 33 ~~qLP~I~~~DPvar~~--------------------G~k~GdVvkI~R 61 (77)
T 1eik_A 33 PEQLPKIKTTDPVAKAI--------------------GAKRGDIVKIIR 61 (77)
T ss_dssp TTTSCCCBTTSHHHHGG--------------------GCCTTCEEEEEE
T ss_pred HHHCCeeeCcCHhhHHh--------------------CCCCCCEEEEEE
Confidence 45689999999988887 457799998865
No 24
>2ojl_A Hypothetical protein; BPR68, NESG, Q7WAF1, structural genomics, PSI-2, protein STR initiative, northeast structural genomics consortium; 2.10A {Bordetella parapertussis}
Probab=28.50 E-value=62 Score=22.48 Aligned_cols=52 Identities=17% Similarity=0.268 Sum_probs=33.6
Q ss_pred HHHHHHHhHCCCCchhhcccCCCCCceEEEEeeCceEEEEECCEEEEEEecCCCcchhhHhhh
Q 030242 23 KIRQSIADEYPGLEPVLDDLLPKKSPLIVAKCQNHLNLVLVNNVPLFFNIRDGPYMPTLRLLH 85 (180)
Q Consensus 23 kLr~~i~~~f~~~~~~~~~l~p~~~~v~~~k~~~~~~~y~~dg~pl~f~~~~~~~~PTl~~l~ 85 (180)
.+.+++..+|+. .+ ..+++..-++..-++.+||.++|=+..++. ||....|.
T Consensus 27 ~laqeLl~tF~~---~l-------~eV~L~P~~~G~FeV~vng~lVwsRk~~gg-FPe~keLk 78 (108)
T 2ojl_A 27 WMAQELLSTFGA---DL-------GEVALVPGTGGVFRIHYNGAPLWDREVDGG-FPEAKVLK 78 (108)
T ss_dssp HHHHHHHHHHGG---GS-------SEEEEEEECTTCEEEEETTEEEEEHHHHCS-CCCHHHHH
T ss_pred HHHHHHHHhcCc---cc-------ceEEEEeCCCceEEEEECCEEEEEEccCCC-CCCHHHHH
Confidence 577889999973 12 235555445666667789999986655443 57765443
No 25
>2hd9_A UPF0310 protein PH1033; pyrococcus horikoshii OT3, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: CIT; 1.35A {Pyrococcus horikoshii} SCOP: b.122.1.8 PDB: 1wmm_A* 2zbn_A
Probab=24.37 E-value=79 Score=22.75 Aligned_cols=26 Identities=12% Similarity=0.083 Sum_probs=19.3
Q ss_pred cCCCCCCeEEEeeCCC---------CeEEEEEEEe
Q 030242 124 EEVGAETPVAIMAEGK---------QHALAIGFTK 149 (180)
Q Consensus 124 ~~~~~Gd~V~V~~~~~---------~~~vaVG~~~ 149 (180)
...++||.+..+..+. ..++|||+..
T Consensus 33 r~mk~GD~~~fYhs~~~~~~~~~~~~~ivGi~eV~ 67 (145)
T 2hd9_A 33 SRVKPGDKLVIYVRQEKDKEGNLLEPKIVGIYEVT 67 (145)
T ss_dssp TTCCTTCEEEEEECCEECTTCCEECCEEEEEEEEC
T ss_pred HhCCCCCEEEEEEccccccCCCCCCceEEEEEEEc
Confidence 3689999999998543 4677777664
No 26
>4ayb_H DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_H 2y0s_H 2waq_H 4b1o_H 4b1p_Z 2pmz_H 3hkz_H
Probab=23.91 E-value=58 Score=21.55 Aligned_cols=28 Identities=4% Similarity=0.100 Sum_probs=22.4
Q ss_pred CCCcEEEECcchhhhhhcCCcccCCcccCCCCCCCcCCCCCCeEEEee
Q 030242 89 NIMKKLQVDRGAIKFVLSGANIMCPGLTSPGGSLDEEVGAETPVAIMA 136 (180)
Q Consensus 89 ~~~p~v~v~~~a~~~i~~GAdLm~pGV~~~~~~~~~~~~~Gd~V~V~~ 136 (180)
+-+|++...|++++++ ++++||+|-|.-
T Consensus 40 ~qLP~I~~~DPva~~~--------------------g~k~GdVvkI~R 67 (84)
T 4ayb_H 40 EQLPWIRASDPVARSI--------------------NAKPGDIIRIIR 67 (84)
T ss_dssp GGSCCEESSSHHHHHH--------------------TCCTTCEEEEEE
T ss_pred hHCCeecccCHhHHhh--------------------CCCCCCEEEEEE
Confidence 4578999999988887 467899997765
No 27
>2fa8_A Hypothetical protein ATU0228; ALPH-beta structure, 4 helix bundle, structural genomics, PS protein structure initiative; 1.90A {Agrobacterium tumefaciens str} SCOP: c.47.1.23
Probab=23.73 E-value=1.3e+02 Score=20.57 Aligned_cols=52 Identities=17% Similarity=0.238 Sum_probs=33.2
Q ss_pred HHHHHHHHhHCCCCchhhcccCCCCCceEEEEeeCceEEEEECCEEEEEEecCCCcchhhHhh
Q 030242 22 RKIRQSIADEYPGLEPVLDDLLPKKSPLIVAKCQNHLNLVLVNNVPLFFNIRDGPYMPTLRLL 84 (180)
Q Consensus 22 kkLr~~i~~~f~~~~~~~~~l~p~~~~v~~~k~~~~~~~y~~dg~pl~f~~~~~~~~PTl~~l 84 (180)
..+.+.+..+|+. .+. .+++..-++..-++++||.++|=+.+++. ||...-|
T Consensus 25 ~~laqeLl~tF~~---~l~-------~V~l~P~~~G~FEV~vng~lV~SKk~~gg-FPe~~el 76 (105)
T 2fa8_A 25 GWMAQEILQTFAS---DIG-------EVSLIPSTGGLFEITVDGTIIWERKRDGG-FPGPKEL 76 (105)
T ss_dssp HHHHHHHHHHHGG---GCS-------EEEEEEECTTCEEEEETTEEEEEHHHHTS-CCCHHHH
T ss_pred HHHHHHHHHHcCc---ccc-------eEEEEcCCCcEEEEEECCEEEEEeccCCC-CCCHHHH
Confidence 4578888999973 121 24555445556667789999986665444 6766444
No 28
>3dex_A SAV_2001; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.70A {Streptomyces avermitilis} SCOP: c.47.1.0
Probab=22.22 E-value=2e+02 Score=19.84 Aligned_cols=51 Identities=12% Similarity=0.120 Sum_probs=31.4
Q ss_pred HHHHHHHHhHCCCCchhhcccCCCCCceEEEEeeCceEEEEECCEEEEEEecCCCcchhhHhh
Q 030242 22 RKIRQSIADEYPGLEPVLDDLLPKKSPLIVAKCQNHLNLVLVNNVPLFFNIRDGPYMPTLRLL 84 (180)
Q Consensus 22 kkLr~~i~~~f~~~~~~~~~l~p~~~~v~~~k~~~~~~~y~~dg~pl~f~~~~~~~~PTl~~l 84 (180)
..+.+++..+|+. .++ .+++..-++..-.+.+||..+|=+. ++ =||...-|
T Consensus 30 ~~laqeLl~tF~~---~l~-------eVsL~Pg~gG~FeV~vdg~lVwsRk-~g-GFPd~keL 80 (107)
T 3dex_A 30 AWLAQELLTTFET---ELT-------ELALKPGTGGVFVVRVDDEVVWDRR-EQ-GFPEPTAV 80 (107)
T ss_dssp HHHHHHHHHHSTT---TEE-------EEEEEEESSSCEEEEETTEEEEEHH-HH-CSCCHHHH
T ss_pred HHHHHHHHHhccc---ccc-------eEEEEeCCCceEEEEECCEEEEEec-CC-CCCCHHHH
Confidence 3578889999984 222 2444443555566678999988554 33 36666444
No 29
>3tee_A Flagella basal BODY P-ring formation protein FLGA; chaperone, flagellar P-ring formation, flagellar FLGI protei periplasmic protein; 1.95A {Salmonella typhimurium}
Probab=21.87 E-value=1.5e+02 Score=22.83 Aligned_cols=55 Identities=15% Similarity=0.081 Sum_probs=35.9
Q ss_pred hhhhcCCcccCCcccCCCCCCCcCCCCCCeEEEeeCCCC-eEEEEEEEecCHHHHhcCCcceEEEEE
Q 030242 102 KFVLSGANIMCPGLTSPGGSLDEEVGAETPVAIMAEGKQ-HALAIGFTKMSAKDIKAINKGIGVDNM 167 (180)
Q Consensus 102 ~~i~~GAdLm~pGV~~~~~~~~~~~~~Gd~V~V~~~~~~-~~vaVG~~~~s~~~i~~~~kG~av~v~ 167 (180)
+.|..|.-|..--+.. +.-+++||.|.|...+.+ .+-+-|+|+-+ +..|..|+|.
T Consensus 122 r~l~~Gq~i~~~~L~~-----~~lV~rG~~V~i~~~~~g~~i~~~G~AL~~------G~~Gd~IrVr 177 (219)
T 3tee_A 122 RDLAPGQPVQLTMIRQ-----AWRVKAGQRVQVIANGEGFSVNAEGQAMNN------AAVAQNARVR 177 (219)
T ss_dssp SCBCTTCBCBGGGEEE-----CCSBCTTCEEEEEEECSSCEEEEEEEECSC------BCTTSEEEEE
T ss_pred cccCCCCccCHHHccc-----ccEEcCCCEEEEEEecCCEEEEEEEEEccc------cCCCCEEEEE
Confidence 3444455544444432 246899999999987655 56689999765 4667666663
Done!