BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030244
(180 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LTD9|Y5278_ARATH Uncharacterized protein PAM68-like OS=Arabidopsis thaliana
GN=At5g52780 PE=2 SV=1
Length = 168
Score = 119 bits (297), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 73/179 (40%), Positives = 100/179 (55%), Gaps = 11/179 (6%)
Query: 1 MRTLLSSQNPLLLFQKPSVWNLRSSFTHPTTQQSLTSHPTTSWKLHANAKGFGARNTSPP 60
MR LL S LL S +++ +P T + P KLHA KGF + TS
Sbjct: 1 MRALLCSHR-LLPLSSLSRTTVKTKSHNPKTLYP-NNKPRWESKLHAGPKGFQSSRTSEK 58
Query: 61 ASLNKSASDDENNNNNNSDEDHLPQVVLERIIVRILVSVGVPLATGIASLHFFGVVKEKQ 120
+D+ Q V ER++ RI+VSVG PL G+A L V+K++
Sbjct: 59 PGRPDPDPEDDPPIP---------QEVFERMMGRIVVSVGTPLGLGVAILKVLEVLKDRN 109
Query: 121 LFDLPLWIPLVTTFLTFGLSAVGIAYGSLSSSWDAEKQGSLLGFEEAKQNWVEIWNEDD 179
++D+PLW+P +TT +TFG SA+GIAYGSLS++ D K SL G +EAK+NWVE+W ED
Sbjct: 110 VWDVPLWVPYLTTLVTFGSSALGIAYGSLSTNLDPAKTNSLFGLKEAKENWVEMWKEDQ 168
>sp|O49668|PAM68_ARATH Protein PAM68, chloroplastic OS=Arabidopsis thaliana GN=PAM68 PE=1
SV=1
Length = 214
Score = 90.1 bits (222), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 39/97 (40%), Positives = 62/97 (63%)
Query: 79 DEDHLPQVVLERIIVRILVSVGVPLATGIASLHFFGVVKEKQLFDLPLWIPLVTTFLTFG 138
+ +P++V R+I R+ +VG+PL G+ FF +K D+P W+P + +F+ FG
Sbjct: 108 ERGVIPEIVTNRMISRMGFTVGLPLFIGLLFFPFFYYLKVGLKVDVPTWVPFIVSFVFFG 167
Query: 139 LSAVGIAYGSLSSSWDAEKQGSLLGFEEAKQNWVEIW 175
+ G++YG +SSSWD ++GSLLG+ EAK+NW W
Sbjct: 168 TALAGVSYGIVSSSWDPLREGSLLGWNEAKKNWPVFW 204
>sp|Q9UTQ9|SPC2_SCHPO Signal peptidase complex subunit spc2 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=spc2 PE=3 SV=1
Length = 167
Score = 34.3 bits (77), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
Query: 65 KSASDDENNNNNNSDEDHLPQVVLERIIVRILVSVGVP--LATGIASLHFFGVVKEKQLF 122
KS D E N+ N + + V E I + I ++ +P LA GI ++ FGV+K +
Sbjct: 10 KSKFDKELTNHFNKN-GYKQSFVFEDIRLLIAIACIIPAGLAFGIEYVYGFGVLKSYLKY 68
Query: 123 DLPLWIPLVTTFLTFGLSAV 142
LPL+ L + LTF S V
Sbjct: 69 LLPLYF-LASCLLTFWSSVV 87
>sp|A0AM16|ATKB_LISW6 Potassium-transporting ATPase B chain OS=Listeria welshimeri
serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334)
GN=kdpB PE=3 SV=1
Length = 681
Score = 31.6 bits (70), Expect = 2.7, Method: Composition-based stats.
Identities = 25/65 (38%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 93 VRILVSVGVPLATGIASLHFFGVVKEKQLFDLPLWIPLVTTFLTFGLSAVGIAYGSLSSS 152
V +LV VG LAT + L FFG+ EK + L + + L T L F A IA G +
Sbjct: 28 VMLLVYVGAILATSLYFLGFFGISDEKSGYTLAIALILWFTVL-FANFAEAIAEGRGRAQ 86
Query: 153 WDAEK 157
D+ K
Sbjct: 87 ADSLK 91
>sp|Q8Y3Z7|ATKB_LISMO Potassium-transporting ATPase B chain OS=Listeria monocytogenes
serovar 1/2a (strain ATCC BAA-679 / EGD-e) GN=kdpB PE=3
SV=1
Length = 681
Score = 31.6 bits (70), Expect = 2.7, Method: Composition-based stats.
Identities = 25/65 (38%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 93 VRILVSVGVPLATGIASLHFFGVVKEKQLFDLPLWIPLVTTFLTFGLSAVGIAYGSLSSS 152
V +LV VG LAT + L FFG+ EK + L + + L T L F A IA G +
Sbjct: 28 VMLLVYVGAILATSLYFLGFFGISDEKSGYTLAIALILWFTVL-FANFAEAIAEGRGRAQ 86
Query: 153 WDAEK 157
D+ K
Sbjct: 87 ADSLK 91
>sp|Q71W90|ATKB_LISMF Potassium-transporting ATPase B chain OS=Listeria monocytogenes
serotype 4b (strain F2365) GN=kdpB PE=3 SV=1
Length = 681
Score = 31.6 bits (70), Expect = 2.7, Method: Composition-based stats.
Identities = 25/65 (38%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 93 VRILVSVGVPLATGIASLHFFGVVKEKQLFDLPLWIPLVTTFLTFGLSAVGIAYGSLSSS 152
V +LV VG LAT + L FFG+ EK + L + + L T L F A IA G +
Sbjct: 28 VMLLVYVGAILATSLYFLGFFGISDEKSGYTLAIALILWFTVL-FANFAEAIAEGRGRAQ 86
Query: 153 WDAEK 157
D+ K
Sbjct: 87 ADSLK 91
>sp|C1KZN5|ATKB_LISMC Potassium-transporting ATPase B chain OS=Listeria monocytogenes
serotype 4b (strain CLIP80459) GN=kdpB PE=3 SV=1
Length = 681
Score = 31.6 bits (70), Expect = 2.7, Method: Composition-based stats.
Identities = 25/65 (38%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 93 VRILVSVGVPLATGIASLHFFGVVKEKQLFDLPLWIPLVTTFLTFGLSAVGIAYGSLSSS 152
V +LV VG LAT + L FFG+ EK + L + + L T L F A IA G +
Sbjct: 28 VMLLVYVGAILATSLYFLGFFGISDEKSGYTLAIALILWFTVL-FANFAEAIAEGRGRAQ 86
Query: 153 WDAEK 157
D+ K
Sbjct: 87 ADSLK 91
>sp|B8DAW1|ATKB_LISMH Potassium-transporting ATPase B chain OS=Listeria monocytogenes
serotype 4a (strain HCC23) GN=kdpB PE=3 SV=1
Length = 681
Score = 31.6 bits (70), Expect = 2.8, Method: Composition-based stats.
Identities = 25/65 (38%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 93 VRILVSVGVPLATGIASLHFFGVVKEKQLFDLPLWIPLVTTFLTFGLSAVGIAYGSLSSS 152
V +LV VG LAT + L FFG+ EK + L + + L T L F A IA G +
Sbjct: 28 VMLLVYVGAILATSLYFLGFFGISDEKSGYTLAIALILWFTVL-FANFAEAIAEGRGRAQ 86
Query: 153 WDAEK 157
D+ K
Sbjct: 87 ADSLK 91
>sp|Q927G0|ATKB1_LISIN Potassium-transporting ATPase B chain 1 OS=Listeria innocua serovar
6a (strain CLIP 11262) GN=kdpB1 PE=3 SV=1
Length = 681
Score = 31.6 bits (70), Expect = 3.3, Method: Composition-based stats.
Identities = 25/65 (38%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 93 VRILVSVGVPLATGIASLHFFGVVKEKQLFDLPLWIPLVTTFLTFGLSAVGIAYGSLSSS 152
V +LV VG LAT + L FFG+ EK + L + + L T L F A IA G +
Sbjct: 28 VMLLVYVGAILATSLYFLGFFGISDEKAGYTLAIALILWFTVL-FANFAEAIAEGRGRAQ 86
Query: 153 WDAEK 157
D+ K
Sbjct: 87 ADSLK 91
>sp|O08710|THYG_MOUSE Thyroglobulin OS=Mus musculus GN=Tg PE=1 SV=3
Length = 2766
Score = 31.2 bits (69), Expect = 3.3, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 10/71 (14%)
Query: 10 PLLLFQKPSVWNLRSSFTHPTTQQSLTSHPTT--SWKLHA--------NAKGFGARNTSP 59
P +QKP+VW+ SF QSLT T SW+ A + K F + S
Sbjct: 2056 PFGWYQKPAVWSDTPSFCPSAALQSLTEEKVTSDSWQTLALSSVIVDPSIKHFDVAHIST 2115
Query: 60 PASLNKSASDD 70
A+ N S + D
Sbjct: 2116 AATSNFSMAQD 2126
>sp|P40505|SDS3_YEAST Transcriptional regulatory protein SDS3 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SDS3 PE=1 SV=1
Length = 327
Score = 30.8 bits (68), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 9/82 (10%)
Query: 8 QNPLLLFQKPSVWNLRSSFTHPTTQQSLTSHPTTSWKLHANAKGFGARNTSPPAS----- 62
Q LL +V + +++ P Q++ SH + W +N G N S +
Sbjct: 129 QEERLLMDVANVHSYAMNYSRPQYQKNTRSHTVSGWDSSSNEYGRDTANESATDTGAGND 188
Query: 63 ----LNKSASDDENNNNNNSDE 80
++AS D NNNN DE
Sbjct: 189 RRTLRRRNASKDTRGNNNNQDE 210
>sp|Q4FNM9|IF2_PELUB Translation initiation factor IF-2 OS=Pelagibacter ubique (strain
HTCC1062) GN=infB PE=3 SV=1
Length = 734
Score = 30.8 bits (68), Expect = 4.8, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 8/65 (12%)
Query: 7 SQNPLLLFQKPSVWNLRSSFTHPTTQQSLTSHPTTSWKLHANAKGFGARNTSPPASLNKS 66
S+N +++ +KPS + RSSFT P + +S + TTS F R S P +
Sbjct: 28 SKNSVVIEKKPSKFAPRSSFTRPASVRSKPAVSTTS--------SFPPRTASVPKPASPI 79
Query: 67 ASDDE 71
+D E
Sbjct: 80 TNDYE 84
>sp|Q38967|AAP2_ARATH Amino acid permease 2 OS=Arabidopsis thaliana GN=AAP2 PE=1 SV=1
Length = 493
Score = 30.0 bits (66), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 122 FDLPLWIPLVTTFLTFGLSAVGIAYGSLSSSWDAEKQGSLLG 163
FD WI +V ++F SA+G+A G + + + +GSL G
Sbjct: 198 FDQIWWISIVAAVMSFTYSAIGLALGIVQVAANGVFKGSLTG 239
>sp|A7LFZ6|DCL4_ORYSJ Endoribonuclease Dicer homolog 4 OS=Oryza sativa subsp. japonica
GN=DCL4 PE=2 SV=1
Length = 1657
Score = 30.0 bits (66), Expect = 9.0, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 60 PASLNKSASDDENNNNNNSDEDHLPQVVLERIIVRILVSVGVPLATGIASLHFFGV 115
P S S N++NN ++D L + + E +I +L G+ L + +++LHF+ V
Sbjct: 669 PGSRKNKVSVTNNSSNNKVEDDSLREELHEMLIPAVLKPSGLKLDS-LSNLHFYYV 723
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.130 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,818,577
Number of Sequences: 539616
Number of extensions: 2855495
Number of successful extensions: 41664
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 87
Number of HSP's that attempted gapping in prelim test: 34285
Number of HSP's gapped (non-prelim): 6626
length of query: 180
length of database: 191,569,459
effective HSP length: 110
effective length of query: 70
effective length of database: 132,211,699
effective search space: 9254818930
effective search space used: 9254818930
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 57 (26.6 bits)