Query 030244
Match_columns 180
No_of_seqs 89 out of 91
Neff 3.3
Searched_HMMs 46136
Date Fri Mar 29 10:46:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030244.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030244hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF11947 DUF3464: Protein of u 100.0 2.1E-52 4.6E-57 338.0 11.8 107 71-177 41-147 (153)
2 PF08592 DUF1772: Domain of un 76.6 24 0.00051 26.2 7.9 87 87-174 25-120 (139)
3 TIGR02230 ATPase_gene1 F0F1-AT 74.1 8.8 0.00019 29.7 5.1 30 90-122 43-72 (100)
4 PF07332 DUF1469: Protein of u 69.0 28 0.00061 25.9 6.8 54 88-141 31-87 (121)
5 PF06570 DUF1129: Protein of u 66.8 16 0.00036 30.1 5.6 48 91-139 146-193 (206)
6 PF00689 Cation_ATPase_C: Cati 64.9 45 0.00097 25.8 7.4 90 71-171 34-126 (182)
7 KOG1600 Fatty acid desaturase 61.8 19 0.00042 33.2 5.5 45 95-148 43-87 (321)
8 PF11947 DUF3464: Protein of u 61.5 19 0.00041 29.8 5.0 40 72-111 46-85 (153)
9 TIGR00893 2A0114 d-galactonate 59.6 18 0.00039 29.0 4.4 41 134-174 321-361 (399)
10 PF14940 TMEM219: Transmembran 58.6 11 0.00023 33.0 3.2 48 125-174 9-56 (223)
11 PF04246 RseC_MucC: Positive r 58.2 41 0.0009 25.8 6.1 56 82-146 61-116 (135)
12 PF04120 Iron_permease: Low af 55.3 39 0.00084 27.3 5.7 41 89-129 2-42 (132)
13 PRK11492 hyfE hydrogenase 4 me 53.9 41 0.00088 28.9 5.9 58 87-144 75-142 (216)
14 COG4709 Predicted membrane pro 53.1 48 0.001 28.8 6.2 19 92-110 88-106 (195)
15 PF08285 DPM3: Dolichol-phosph 52.2 39 0.00085 25.6 5.0 21 130-152 44-64 (91)
16 PF08041 PetM: PetM family of 51.9 13 0.00028 23.7 1.9 20 130-149 4-23 (31)
17 PF12666 PrgI: PrgI family pro 49.5 25 0.00055 25.3 3.5 57 82-141 8-64 (93)
18 TIGR00267 conserved hypothetic 49.4 27 0.00059 28.5 4.0 53 93-150 89-141 (169)
19 PF07214 DUF1418: Protein of u 49.3 31 0.00068 26.9 4.1 39 103-142 15-56 (96)
20 TIGR00879 SP MFS transporter, 49.2 30 0.00064 28.8 4.2 29 146-174 405-433 (481)
21 PF02687 FtsX: FtsX-like perme 49.2 87 0.0019 21.7 6.3 59 85-143 41-108 (121)
22 PRK10747 putative protoheme IX 48.4 16 0.00036 32.5 2.8 49 114-164 27-75 (398)
23 COG1814 Uncharacterized membra 47.9 38 0.00082 28.8 4.8 69 77-150 127-196 (229)
24 PF08566 Pam17: Mitochondrial 46.9 47 0.001 28.2 5.1 28 89-116 34-61 (173)
25 PF03176 MMPL: MMPL family; I 46.9 31 0.00067 29.5 4.2 6 143-148 215-220 (333)
26 PF06781 UPF0233: Uncharacteri 46.3 26 0.00056 26.6 3.2 39 103-142 41-81 (87)
27 PF06181 DUF989: Protein of un 45.8 30 0.00064 31.8 4.0 39 104-142 91-135 (300)
28 PF09527 ATPase_gene1: Putativ 45.7 87 0.0019 20.7 5.7 41 92-137 3-43 (55)
29 COG3090 DctM TRAP-type C4-dica 45.6 1E+02 0.0022 25.2 6.8 73 88-169 8-81 (177)
30 PRK10591 hypothetical protein; 45.4 42 0.00091 26.0 4.2 38 104-142 16-56 (92)
31 PF06728 PIG-U: GPI transamida 45.4 17 0.00036 33.1 2.4 48 127-175 214-263 (382)
32 PF13630 SdpI: SdpI/YhfL prote 44.6 98 0.0021 21.0 6.5 25 86-110 24-48 (76)
33 PRK11876 petM cytochrome b6-f 44.4 20 0.00044 22.9 2.0 21 130-150 6-26 (32)
34 PRK09669 putative symporter Ya 44.4 18 0.0004 31.6 2.5 74 94-172 81-158 (444)
35 PF06496 DUF1097: Protein of u 44.2 25 0.00054 27.7 2.9 35 105-140 2-36 (144)
36 PRK08386 putative monovalent c 42.8 49 0.0011 26.9 4.5 37 125-163 68-104 (151)
37 PF03613 EIID-AGA: PTS system 42.2 48 0.0011 29.3 4.7 42 102-144 222-263 (264)
38 TIGR00792 gph sugar (Glycoside 42.1 32 0.0007 29.3 3.5 74 95-173 72-149 (437)
39 PLN02220 delta-9 acyl-lipid de 41.8 57 0.0012 29.4 5.2 22 127-148 55-76 (299)
40 PF01788 PsbJ: PsbJ; InterPro 41.4 28 0.00062 23.4 2.4 23 122-145 6-28 (40)
41 PF11026 DUF2721: Protein of u 40.1 94 0.002 24.3 5.6 22 122-143 93-114 (130)
42 PF04156 IncA: IncA protein; 39.7 64 0.0014 25.7 4.7 25 89-113 4-29 (191)
43 PF13903 Claudin_2: PMP-22/EMP 39.4 1.6E+02 0.0035 22.0 6.8 26 85-110 61-86 (172)
44 COG0713 NuoK NADH:ubiquinone o 39.0 28 0.0006 27.4 2.4 21 124-144 2-22 (100)
45 TIGR00145 FTR1 family protein. 38.8 65 0.0014 28.7 5.0 48 103-150 157-213 (283)
46 PRK10249 phenylalanine transpo 38.4 39 0.00084 30.6 3.6 72 87-164 19-90 (458)
47 PF07589 VPEP: PEP-CTERM motif 37.4 27 0.00059 20.7 1.7 14 133-146 7-20 (25)
48 COG3716 ManZ Phosphotransferas 36.0 57 0.0012 29.6 4.2 42 102-149 228-269 (269)
49 PF10823 DUF2568: Protein of u 35.8 1.3E+02 0.0028 22.7 5.6 52 90-144 24-75 (93)
50 PRK03893 putative sialic acid 34.2 56 0.0012 28.5 3.8 35 138-172 380-414 (496)
51 PF03806 ABG_transport: AbgT p 33.6 1.2E+02 0.0026 29.6 6.2 26 131-156 299-324 (502)
52 TIGR00540 hemY_coli hemY prote 32.3 30 0.00064 30.8 1.8 48 114-165 27-76 (409)
53 PRK00159 putative septation in 31.9 95 0.0021 23.8 4.2 39 103-142 41-81 (87)
54 KOG3882 Tetraspanin family int 31.8 71 0.0015 26.2 3.9 23 122-144 49-71 (237)
55 TIGR00891 2A0112 putative sial 30.7 1.4E+02 0.003 24.6 5.4 48 126-173 99-149 (405)
56 PRK10714 undecaprenyl phosphat 30.5 1.1E+02 0.0024 26.8 5.1 7 124-130 265-271 (325)
57 PRK14230 camphor resistance pr 29.6 1.2E+02 0.0026 23.7 4.7 18 125-142 32-50 (119)
58 PF09679 TraQ: Type-F conjugat 29.2 91 0.002 24.3 3.8 27 124-151 35-61 (93)
59 COG5393 Predicted membrane pro 29.1 1.5E+02 0.0033 24.3 5.2 51 94-144 49-100 (131)
60 PRK08633 2-acyl-glycerophospho 28.6 1.3E+02 0.0027 29.6 5.5 30 145-174 124-153 (1146)
61 PF09972 DUF2207: Predicted me 28.1 1.5E+02 0.0033 26.2 5.6 27 145-174 448-479 (511)
62 PF11127 DUF2892: Protein of u 28.1 1.4E+02 0.003 20.2 4.2 20 126-145 33-52 (66)
63 PF15012 DUF4519: Domain of un 27.7 32 0.00069 24.5 1.0 28 92-119 26-54 (56)
64 COG4317 Uncharacterized protei 27.7 96 0.0021 24.1 3.7 26 103-130 8-33 (93)
65 PTZ00128 cytochrome c oxidase 27.6 1.8E+02 0.0039 25.8 5.8 35 82-116 47-81 (232)
66 PF12279 DUF3619: Protein of u 27.4 1.6E+02 0.0034 23.7 5.0 26 77-102 15-42 (131)
67 PF10112 Halogen_Hydrol: 5-bro 27.3 1.6E+02 0.0034 24.0 5.2 14 98-111 12-25 (199)
68 PF14362 DUF4407: Domain of un 26.7 2.4E+02 0.0051 24.4 6.4 47 122-174 41-87 (301)
69 COG0472 Rfe UDP-N-acetylmuramy 26.6 74 0.0016 28.6 3.4 12 100-111 46-57 (319)
70 PRK09874 drug efflux system pr 26.6 1.4E+02 0.0031 24.9 4.9 26 148-173 130-155 (408)
71 TIGR00701 conserved hypothetic 26.5 3.4E+02 0.0073 21.7 7.1 46 85-131 40-85 (142)
72 COG2733 Predicted membrane pro 26.3 1.2E+02 0.0027 29.0 4.9 41 88-134 3-43 (415)
73 KOG4737 ATPase membrane sector 26.2 61 0.0013 30.0 2.7 35 122-158 277-312 (326)
74 TIGR00916 2A0604s01 protein-ex 26.1 1E+02 0.0022 25.3 3.9 32 78-109 29-63 (192)
75 PLN00028 nitrate transmembrane 26.1 1.5E+02 0.0033 26.7 5.2 18 149-166 148-165 (476)
76 COG4967 PilV Tfp pilus assembl 26.0 49 0.0011 27.7 2.0 15 131-145 18-32 (162)
77 PF06170 DUF983: Protein of un 25.6 2E+02 0.0043 21.5 5.0 25 115-139 43-67 (86)
78 COG0577 SalY ABC-type antimicr 25.6 2.6E+02 0.0057 22.7 6.1 63 82-144 327-400 (419)
79 TIGR00896 CynX cyanate transpo 25.1 1.5E+02 0.0033 24.6 4.8 24 149-172 111-134 (355)
80 PF06022 Cir_Bir_Yir: Plasmodi 25.1 81 0.0018 28.1 3.3 23 86-108 256-278 (280)
81 PRK02565 photosystem II reacti 24.9 33 0.00071 23.0 0.6 23 122-145 5-27 (39)
82 PF00335 Tetraspannin: Tetrasp 24.7 25 0.00053 26.6 0.0 19 126-144 46-64 (221)
83 PRK10692 hypothetical protein; 24.7 1.8E+02 0.0039 22.6 4.7 50 94-143 4-57 (92)
84 PRK10714 undecaprenyl phosphat 24.6 1.6E+02 0.0034 25.8 5.0 27 121-147 268-294 (325)
85 COG4956 Integral membrane prot 24.5 2.2E+02 0.0049 26.8 6.1 60 89-148 70-131 (356)
86 PRK09556 uhpT sugar phosphate 24.5 5E+02 0.011 23.0 8.2 77 79-157 10-95 (467)
87 TIGR00901 2A0125 AmpG-related 24.4 2.5E+02 0.0053 23.3 5.9 30 141-170 326-355 (356)
88 PF12966 AtpR: N-ATPase, AtpR 24.3 1.7E+02 0.0036 21.7 4.4 74 103-177 11-84 (85)
89 TIGR00879 SP MFS transporter, 24.0 2.8E+02 0.006 23.1 6.1 45 129-173 129-176 (481)
90 TIGR01666 YCCS hypothetical me 23.8 1.2E+02 0.0026 30.3 4.6 23 121-143 77-99 (704)
91 PRK03633 putative MFS family t 23.8 2.1E+02 0.0045 24.3 5.4 48 126-173 93-143 (381)
92 PRK15120 lipopolysaccharide AB 23.7 1.6E+02 0.0035 26.0 4.9 39 105-143 301-345 (366)
93 TIGR00898 2A0119 cation transp 23.6 1.7E+02 0.0036 25.9 4.9 76 86-171 149-227 (505)
94 COG4252 Predicted transmembran 23.5 1E+02 0.0022 29.1 3.7 79 81-163 301-382 (400)
95 PF12606 RELT: Tumour necrosis 23.5 41 0.00089 23.2 0.9 21 130-150 4-24 (50)
96 PF10277 Frag1: Frag1/DRAM/Sfk 23.4 2.9E+02 0.0063 21.6 5.9 55 89-143 53-109 (215)
97 PRK09855 PTS system N-acetylga 23.2 1.4E+02 0.003 26.6 4.3 47 86-143 214-261 (263)
98 PRK12307 putative sialic acid 22.9 1.9E+02 0.0041 24.7 5.0 29 144-172 126-154 (426)
99 CHL00108 psbJ photosystem II p 22.8 19 0.00042 24.2 -0.8 23 122-145 6-28 (40)
100 PRK12382 putative transporter; 22.6 3.2E+02 0.0069 23.1 6.3 22 151-172 139-160 (392)
101 PLN02505 omega-6 fatty acid de 22.6 3.1E+02 0.0067 25.5 6.7 25 80-104 37-61 (381)
102 PRK15071 lipopolysaccharide AB 22.5 1.6E+02 0.0035 25.6 4.6 22 119-140 326-348 (356)
103 PF07235 DUF1427: Protein of u 22.0 1.2E+02 0.0025 23.6 3.2 26 102-129 6-31 (90)
104 PF02656 DUF202: Domain of unk 22.0 2.2E+02 0.0048 19.4 4.4 24 126-149 42-65 (73)
105 PF07152 YaeQ: YaeQ protein; 21.7 44 0.00096 28.2 0.9 16 84-99 33-48 (174)
106 PRK09877 2,3-diketo-L-gulonate 21.6 2.6E+02 0.0056 22.0 5.2 41 124-172 33-73 (157)
107 PF02673 BacA: Bacitracin resi 21.6 3.1E+02 0.0068 24.0 6.2 55 89-145 179-234 (259)
108 PRK10408 putative L-valine exp 21.5 1.5E+02 0.0033 23.7 3.9 20 100-120 71-90 (111)
109 TIGR00891 2A0112 putative sial 21.3 2.2E+02 0.0049 23.4 5.0 31 143-173 347-377 (405)
110 PRK01821 hypothetical protein; 21.3 2.2E+02 0.0048 22.9 4.8 25 85-110 61-85 (133)
111 PF12597 DUF3767: Protein of u 21.3 1.6E+02 0.0034 23.2 3.9 33 94-129 41-73 (118)
112 COG1183 PssA Phosphatidylserin 21.0 1.4E+02 0.003 26.1 3.9 24 97-120 125-148 (234)
113 PF01769 MgtE: Divalent cation 20.9 3.8E+02 0.0082 20.3 6.6 34 83-116 34-67 (135)
114 PF04279 IspA: Intracellular s 20.5 2.5E+02 0.0055 23.1 5.2 44 99-142 24-67 (176)
115 PRK05122 major facilitator sup 20.4 1.5E+02 0.0034 25.0 4.0 45 128-172 113-160 (399)
116 PF11833 DUF3353: Protein of u 20.3 3.7E+02 0.0081 22.7 6.2 35 100-137 116-150 (194)
117 PRK10862 SoxR reducing system 20.2 4E+02 0.0086 21.5 6.1 55 82-145 68-122 (154)
118 PF01226 Form_Nir_trans: Forma 20.2 4.5E+02 0.0098 22.7 6.8 33 114-146 41-73 (250)
No 1
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=100.00 E-value=2.1e-52 Score=338.03 Aligned_cols=107 Identities=41% Similarity=0.850 Sum_probs=102.4
Q ss_pred ccCCCCCCCCCCccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhcccccCccHHHHHHHHHHHHHhhhhhhhcccc
Q 030244 71 ENNNNNNSDEDHLPQVVLERIIVRILVSVGVPLATGIASLHFFGVVKEKQLFDLPLWIPLVTTFLTFGLSAVGIAYGSLS 150 (180)
Q Consensus 71 ~~~~~~~~~~~~IPevVs~RM~rRm~~f~GiP~~lG~~~f~~~Y~L~~~~~~dvP~wv~~l~S~~~FglglLGiSYGiLS 150 (180)
.+++..++++++|||+|+|||+|||++|||||+++||++|++||+|++++++|||+|+++++|++|||+|||||||||||
T Consensus 41 ~~~~~~~~~~~~IP~~Vs~RM~rRm~~~~GiP~~lG~~~f~~~y~l~~~~~~dvP~~~~~~~S~~~Fg~gllGisYGilS 120 (153)
T PF11947_consen 41 KPQEKRDEDDSAIPEVVSNRMLRRMAVFVGIPTALGVAVFVVFYYLKSRQIVDVPPWAVLLVSLVFFGLGLLGISYGILS 120 (153)
T ss_pred cccccccccccccCHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHhccccccCchHHHHHHHHHHHHHHHhhhhhhcc
Confidence 34445788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcCCCCcccchHHHhhhHhhhccc
Q 030244 151 SSWDAEKQGSLLGFEEAKQNWVEIWNE 177 (180)
Q Consensus 151 ASWD~~r~GSlLG~eE~~~N~~rmw~~ 177 (180)
|||||+|+||+||||||++||+|||++
T Consensus 121 aSWD~~r~GSllG~~e~~~N~~r~~~a 147 (153)
T PF11947_consen 121 ASWDPEREGSLLGWEEFKRNWGRMWEA 147 (153)
T ss_pred cccCCCCCCCcccHHHHHHhHHHHHHH
Confidence 999999999999999999999999865
No 2
>PF08592 DUF1772: Domain of unknown function (DUF1772); InterPro: IPR013901 This entry represents proteins of unknown function.
Probab=76.58 E-value=24 Score=26.24 Aligned_cols=87 Identities=10% Similarity=0.101 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhcccccCccHHHHHHHHHHHHHhhhhhhhccc------cccCC--cCCC
Q 030244 87 VLERIIVRILVSVGVPLATGIASLHFFGVVKEKQLFDLPLWIPLVTTFLTFGLSAVGIAYGSL------SSSWD--AEKQ 158 (180)
Q Consensus 87 Vs~RM~rRm~~f~GiP~~lG~~~f~~~Y~L~~~~~~dvP~wv~~l~S~~~FglglLGiSYGiL------SASWD--~~r~ 158 (180)
+.++|-+|+-.+...-..++++.+....++.....-+--.+..++++++++ ++.+.+++-+. =..|| ++.+
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~T~~~~~P~N~~l~~~~~~~~~~ 103 (139)
T PF08592_consen 25 QWQRFYRRGPRFMPPLSLLSALSYLYLAYVALRRRSRPAARLLWLAAAALL-LSIIPFTFLVNVPINNRLAAWDIESSPE 103 (139)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHH-HHHHHHHHHHhhHHHHHHHHcccccccc
Confidence 346666666444443333444442222221222222222344444433333 34444443331 07787 2222
Q ss_pred Ccccch-HHHhhhHhhh
Q 030244 159 GSLLGF-EEAKQNWVEI 174 (180)
Q Consensus 159 GSlLG~-eE~~~N~~rm 174 (180)
.---.| ++..+.|+++
T Consensus 104 ~~~~~~~~~l~~~W~~~ 120 (139)
T PF08592_consen 104 EAPADWVRALLDRWGRL 120 (139)
T ss_pred ccchHHHHHHHHHHHHH
Confidence 333345 6777777664
No 3
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=74.13 E-value=8.8 Score=29.73 Aligned_cols=30 Identities=20% Similarity=0.037 Sum_probs=23.3
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHhhhhcccc
Q 030244 90 RIIVRILVSVGVPLATGIASLHFFGVVKEKQLF 122 (180)
Q Consensus 90 RM~rRm~~f~GiP~~lG~~~f~~~Y~L~~~~~~ 122 (180)
.|+.=|.+...+|+++|+.+- +||..+..-
T Consensus 43 ~~~g~IG~~~v~pil~G~~lG---~WLD~~~~t 72 (100)
T TIGR02230 43 GMFGLIGWSVAIPTLLGVAVG---IWLDRHYPS 72 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHhhcCC
Confidence 356778888999999998877 788877543
No 4
>PF07332 DUF1469: Protein of unknown function (DUF1469); InterPro: IPR009937 This entry represents proteins found in hypothetical bacterial proteins where is is annotated as ycf49 or ycf49-like. The function is not known.
Probab=68.96 E-value=28 Score=25.88 Aligned_cols=54 Identities=17% Similarity=0.177 Sum_probs=23.0
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhcc--cccCccHHHHHH-HHHHHHHhh
Q 030244 88 LERIIVRILVSVGVPLATGIASLHFFGVVKEKQ--LFDLPLWIPLVT-TFLTFGLSA 141 (180)
Q Consensus 88 s~RM~rRm~~f~GiP~~lG~~~f~~~Y~L~~~~--~~dvP~wv~~l~-S~~~Fglgl 141 (180)
.+|+.+..+.+...-+++.++++.+...+...- ...+|+|..++. ..+++++++
T Consensus 31 ~~~~~~~~~~~~~a~vl~~~~l~~l~~al~~~l~~~~~~~~~~a~liv~~~~l~la~ 87 (121)
T PF07332_consen 31 ARRLGRGLALLVLAAVLALLALLFLLVALVFALWEALGLPPWLAFLIVAGLYLLLAL 87 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHH
Confidence 456666655554444443333332222222221 223477755544 334433333
No 5
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=66.84 E-value=16 Score=30.13 Aligned_cols=48 Identities=21% Similarity=0.229 Sum_probs=24.9
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHhhhhcccccCccHHHHHHHHHHHHH
Q 030244 91 IIVRILVSVGVPLATGIASLHFFGVVKEKQLFDLPLWIPLVTTFLTFGL 139 (180)
Q Consensus 91 M~rRm~~f~GiP~~lG~~~f~~~Y~L~~~~~~dvP~wv~~l~S~~~Fgl 139 (180)
..+|+++.+++.++. +++|....++-..--..+|+|+.++..+++|++
T Consensus 146 ~~k~~~~~~~~~~~w-~~~~~~~~~lp~~inp~l~~~~~iiig~i~~~~ 193 (206)
T PF06570_consen 146 WWKYILISVLAMVLW-IVIFVLTSFLPPVINPVLPPWVYIIIGVIAFAL 193 (206)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHccccCCcCCCHHHHHHHHHHHHHH
Confidence 445555555544433 333334444444444567777776665555544
No 6
>PF00689 Cation_ATPase_C: Cation transporting ATPase, C-terminus; InterPro: IPR006068 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the conserved C-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+ (3.6.3.6 from EC), Na+ (3.6.3.7 from EC), Ca2+ (3.6.3.8 from EC), Na+/K+ (3.6.3.9 from EC), and H+/K+ (3.6.3.10 from EC). In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. More information about this protein can be found at Protein of the Month: ATP Synthases [].; PDB: 3A3Y_A 2ZXE_A 2XZB_A 3B9B_A 3N5K_A 3FPS_A 3B9R_A 1WPG_C 2AGV_A 2O9J_A ....
Probab=64.88 E-value=45 Score=25.82 Aligned_cols=90 Identities=17% Similarity=0.104 Sum_probs=38.1
Q ss_pred ccCCCCCCCCCCccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhcccccCcc---HHHHHHHHHHHHHhhhhhhhc
Q 030244 71 ENNNNNNSDEDHLPQVVLERIIVRILVSVGVPLATGIASLHFFGVVKEKQLFDLPL---WIPLVTTFLTFGLSAVGIAYG 147 (180)
Q Consensus 71 ~~~~~~~~~~~~IPevVs~RM~rRm~~f~GiP~~lG~~~f~~~Y~L~~~~~~dvP~---wv~~l~S~~~FglglLGiSYG 147 (180)
++|++.++++.=+ .+||++++ +..|+..++ +.|..|++.......+-.. -....-++.|..+.+.-+.+.
T Consensus 34 m~r~Pr~~~~~l~----~~~~~~~i-~~~g~~~~~--~~~~~f~~~~~~~~~~~~~~~~~~~~a~T~~F~~lv~~q~~~~ 106 (182)
T PF00689_consen 34 MKRPPRDPNEPLI----NKRLLRRI-LIQGLIMAA--ACFFAFFLGLYIFGWDEETNNDNLAQAQTMAFTALVLSQLFNA 106 (182)
T ss_dssp GGS---TTTS-SS----SHHHHHHH-CCHHHHHHH--HHHHHHHHHHHSTCSSSHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccccccchhhc----cHHhHhHH-HHHHHHHHH--HHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHHHHHhhh
Confidence 6665555554433 46788888 666654433 3333444433333333221 022233333333333333333
Q ss_pred cccccCCcCCCCcccchHHHhhhH
Q 030244 148 SLSSSWDAEKQGSLLGFEEAKQNW 171 (180)
Q Consensus 148 iLSASWD~~r~GSlLG~eE~~~N~ 171 (180)
+..-+ +..+.+-+....+|.
T Consensus 107 ~~~r~----~~~~~~~~~~~~~N~ 126 (182)
T PF00689_consen 107 FNCRS----RRRSVFRFRGIFSNK 126 (182)
T ss_dssp HHTSS----SSSTCTT-STGGGSH
T ss_pred ccccc----ccccceecccccccc
Confidence 32222 234555555666664
No 7
>KOG1600 consensus Fatty acid desaturase [Lipid transport and metabolism]
Probab=61.84 E-value=19 Score=33.24 Aligned_cols=45 Identities=16% Similarity=0.326 Sum_probs=32.5
Q ss_pred HHHhhhhhHHHHHHHHHHHHhhhhcccccCccHHHHHHHHHHHHHhhhhhhhcc
Q 030244 95 ILVSVGVPLATGIASLHFFGVVKEKQLFDLPLWIPLVTTFLTFGLSAVGIAYGS 148 (180)
Q Consensus 95 m~~f~GiP~~lG~~~f~~~Y~L~~~~~~dvP~wv~~l~S~~~FglglLGiSYGi 148 (180)
|+.++++++....+++ .+.... .|.+++.++++..+|-|||+-|.
T Consensus 43 v~~~~~l~~~a~ygl~----~~~~~~-----~w~t~~~~~~l~~v~glgITag~ 87 (321)
T KOG1600|consen 43 VVLFSALHIVALYGLL----APPFSA-----KWETLLFAFFLYAVGGLGITAGY 87 (321)
T ss_pred hHHHHHHHHHHHHHHH----Hhhccc-----hHHHHHHHHHHHHHhhceeeeeh
Confidence 5667777776666554 222221 48899999999999999999885
No 8
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=61.46 E-value=19 Score=29.83 Aligned_cols=40 Identities=10% Similarity=0.167 Sum_probs=31.6
Q ss_pred cCCCCCCCCCCccHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 030244 72 NNNNNNSDEDHLPQVVLERIIVRILVSVGVPLATGIASLH 111 (180)
Q Consensus 72 ~~~~~~~~~~~IPevVs~RM~rRm~~f~GiP~~lG~~~f~ 111 (180)
+......=.+.+-+.|.+||+-++++.+++-+++-++++.
T Consensus 46 ~~~~~~~IP~~Vs~RM~rRm~~~~GiP~~lG~~~f~~~y~ 85 (153)
T PF11947_consen 46 RDEDDSAIPEVVSNRMLRRMAVFVGIPTALGVAVFVVFYY 85 (153)
T ss_pred ccccccccCHHHHHHHHHHHHHHhchHHHHHHHHHHHHHH
Confidence 3444556678899999999999999988888877777553
No 9
>TIGR00893 2A0114 d-galactonate transporter.
Probab=59.61 E-value=18 Score=29.01 Aligned_cols=41 Identities=24% Similarity=0.228 Sum_probs=26.8
Q ss_pred HHHHHHhhhhhhhccccccCCcCCCCcccchHHHhhhHhhh
Q 030244 134 FLTFGLSAVGIAYGSLSSSWDAEKQGSLLGFEEAKQNWVEI 174 (180)
Q Consensus 134 ~~~FglglLGiSYGiLSASWD~~r~GSlLG~eE~~~N~~rm 174 (180)
+.+++.+...+.+.+++..=+++..|...|+-..-.+++.+
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ 361 (399)
T TIGR00893 321 LGFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGI 361 (399)
T ss_pred HHHhchhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhh
Confidence 33444444555566666666777789999988877776643
No 10
>PF14940 TMEM219: Transmembrane 219
Probab=58.56 E-value=11 Score=32.99 Aligned_cols=48 Identities=8% Similarity=0.122 Sum_probs=33.7
Q ss_pred ccHHHHHHHHHHHHHhhhhhhhccccccCCcCCCCcccchHHHhhhHhhh
Q 030244 125 PLWIPLVTTFLTFGLSAVGIAYGSLSSSWDAEKQGSLLGFEEAKQNWVEI 174 (180)
Q Consensus 125 P~wv~~l~S~~~FglglLGiSYGiLSASWD~~r~GSlLG~eE~~~N~~rm 174 (180)
|+-|+|..+++.||+++++++|=| -.=|...+--=-.|..|-.+++++
T Consensus 9 PPlVvF~l~Ll~~aI~~l~Lg~yi--~~~~l~nPDi~~DWN~fL~~ls~l 56 (223)
T PF14940_consen 9 PPLVVFTLCLLLLAISFLCLGYYI--KRNELKNPDIPQDWNTFLLSLSQL 56 (223)
T ss_pred CCchHHHHHHHHHHHHHheeeeEe--cccCCCcccchhhHHHHHHhhcCe
Confidence 899999999999999999999877 333333333335666666666554
No 11
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=58.23 E-value=41 Score=25.81 Aligned_cols=56 Identities=13% Similarity=0.161 Sum_probs=37.6
Q ss_pred CccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhcccccCccHHHHHHHHHHHHHhhhhhhh
Q 030244 82 HLPQVVLERIIVRILVSVGVPLATGIASLHFFGVVKEKQLFDLPLWIPLVTTFLTFGLSAVGIAY 146 (180)
Q Consensus 82 ~IPevVs~RM~rRm~~f~GiP~~lG~~~f~~~Y~L~~~~~~dvP~wv~~l~S~~~FglglLGiSY 146 (180)
+||+ +.+++-.++.-++|+++=++...+.+++-.. .+..++.+++.+++|.+.+-|
T Consensus 61 ~i~~---~~~~~aa~l~Y~lPll~li~g~~l~~~~~~~------e~~~~l~~l~~l~~~~~~~~~ 116 (135)
T PF04246_consen 61 EIPE---SSLLKAAFLVYLLPLLALIAGAVLGSYLGGS------ELWAILGGLLGLALGFLILRL 116 (135)
T ss_pred Eecc---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 4555 4667778888899988777666555555443 466667777777777766654
No 12
>PF04120 Iron_permease: Low affinity iron permease ; InterPro: IPR007251 Although originally identified as a low-affinity iron(II) permease [, ], Fet4 has since been shown to import several other transition metal ions, including copper [, ] and zinc []. Copper, cobalt, and cadmium inhibit Fet4 [, ]. Fet4 is an integral protein of the plasma membrane [, ]. FET4 is not essential, not even in fet3 fet4 double mutants []. Over expression of FET4 improves growth under alkaline conditions []. Transcription of FET4 is induced by Aft1 in response to low levels of iron [, , ] or by Zap1 in response to low zinc [, ], but not in response to low copper []. When the high-affinity iron permease component Fet3 is deleted, FET4 is induced by the addition of copper, zinc, cobalt, or manganese []. It is also induced under anaerobic conditions [, , ] and repressed by Rox1 in aerobic conditions [, ]. Rox1 attenuates the activation of FET4 by Aft1 or Zap1 []. ; GO: 0055085 transmembrane transport
Probab=55.34 E-value=39 Score=27.34 Aligned_cols=41 Identities=22% Similarity=0.069 Sum_probs=35.5
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHhhhhcccccCccHHH
Q 030244 89 ERIIVRILVSVGVPLATGIASLHFFGVVKEKQLFDLPLWIP 129 (180)
Q Consensus 89 ~RM~rRm~~f~GiP~~lG~~~f~~~Y~L~~~~~~dvP~wv~ 129 (180)
+|...++.-++|-|.+.+++++++..|+.....+..+.+--
T Consensus 2 ~r~s~~is~~~gs~~~f~~~~~~Ii~W~i~Gp~~~~sdtWQ 42 (132)
T PF04120_consen 2 ERFSNWISDVAGSPWAFVIAVAVIIVWAISGPVFGFSDTWQ 42 (132)
T ss_pred hHHHHHHHHHHCCHHHHHHHHHHHHHHHHHhccccCcchHH
Confidence 68889999999999999999999999999988887764433
No 13
>PRK11492 hyfE hydrogenase 4 membrane subunit; Provisional
Probab=53.94 E-value=41 Score=28.85 Aligned_cols=58 Identities=14% Similarity=0.096 Sum_probs=30.3
Q ss_pred HHHHHHHHHH------Hhhhh--hHHHHHHHHHHHHhhhhccc--ccCccHHHHHHHHHHHHHhhhhh
Q 030244 87 VLERIIVRIL------VSVGV--PLATGIASLHFFGVVKEKQL--FDLPLWIPLVTTFLTFGLSAVGI 144 (180)
Q Consensus 87 Vs~RM~rRm~------~f~Gi--P~~lG~~~f~~~Y~L~~~~~--~dvP~wv~~l~S~~~FglglLGi 144 (180)
+..|++||+- ...|. -+.+|.++..++|++...-. .+...--.+.+++.+|.+|++|+
T Consensus 75 lL~r~~~k~~~~re~~p~i~~~~s~ll~~~~~i~s~~~~~~i~~~~~~~~~~~l~~a~~lf~iGl~~~ 142 (216)
T PRK11492 75 IMTYAARKLGDNIEEEPVFGPAMSILLAALIVLLCAFVVQPVKLPMALGLKPALAVSLGHFLLGLLCI 142 (216)
T ss_pred HHHHHHHHhCCccccccccchHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 3456666654 12222 23345444455555543321 11222235678889999998875
No 14
>COG4709 Predicted membrane protein [Function unknown]
Probab=53.13 E-value=48 Score=28.81 Aligned_cols=19 Identities=26% Similarity=0.537 Sum_probs=14.4
Q ss_pred HHHHHHhhhhhHHHHHHHH
Q 030244 92 IVRILVSVGVPLATGIASL 110 (180)
Q Consensus 92 ~rRm~~f~GiP~~lG~~~f 110 (180)
+.=..++.|+|+.+|+..|
T Consensus 88 L~~~~v~i~Lpl~~~vi~~ 106 (195)
T COG4709 88 LGLLAVIIGLPLLIGVILF 106 (195)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445678899999988765
No 15
>PF08285 DPM3: Dolichol-phosphate mannosyltransferase subunit 3 (DPM3); InterPro: IPR013174 This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation. DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex [].
Probab=52.19 E-value=39 Score=25.56 Aligned_cols=21 Identities=24% Similarity=0.504 Sum_probs=15.1
Q ss_pred HHHHHHHHHHhhhhhhhcccccc
Q 030244 130 LVTTFLTFGLSAVGIAYGSLSSS 152 (180)
Q Consensus 130 ~l~S~~~FglglLGiSYGiLSAS 152 (180)
++++++++.++.+| ||++.-.
T Consensus 44 ~Lv~fG~Ysl~~lg--y~v~tFn 64 (91)
T PF08285_consen 44 ALVSFGCYSLFTLG--YGVATFN 64 (91)
T ss_pred HHHHHHHHHHHHHH--HhhhccC
Confidence 46788888888777 7776544
No 16
>PF08041 PetM: PetM family of cytochrome b6f complex subunit 7; InterPro: IPR012595 This family consists of the PetM family of cytochrome b6f complex subunit IV. The cytochrome b6f complex consists of 7 subunits and contains 2 beta haem's and 1 chlorophyll alpha per cytochrome f. It is highly active in transferring electrons from decylplastoquinol to oxidised plastocyanin [].; GO: 0009512 cytochrome b6f complex; PDB: 2ZT9_F 1Q90_M 2E76_F 2E75_F 2E74_F 2D2C_S 1VF5_S.
Probab=51.88 E-value=13 Score=23.68 Aligned_cols=20 Identities=35% Similarity=0.640 Sum_probs=16.4
Q ss_pred HHHHHHHHHHhhhhhhhccc
Q 030244 130 LVTTFLTFGLSAVGIAYGSL 149 (180)
Q Consensus 130 ~l~S~~~FglglLGiSYGiL 149 (180)
+-+..+||++-++|++.|++
T Consensus 4 f~~a~i~~~lvlvGla~Gf~ 23 (31)
T PF08041_consen 4 FNIAVICFGLVLVGLALGFV 23 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45677899999999998875
No 17
>PF12666 PrgI: PrgI family protein; InterPro: IPR024414 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 116 and 146 amino acids in length. PrgI is found encoded on plasmids of Enterococcus faecalis, its function is not known.
Probab=49.53 E-value=25 Score=25.29 Aligned_cols=57 Identities=12% Similarity=0.184 Sum_probs=31.1
Q ss_pred CccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhcccccCccHHHHHHHHHHHHHhh
Q 030244 82 HLPQVVLERIIVRILVSVGVPLATGIASLHFFGVVKEKQLFDLPLWIPLVTTFLTFGLSA 141 (180)
Q Consensus 82 ~IPevVs~RM~rRm~~f~GiP~~lG~~~f~~~Y~L~~~~~~dvP~wv~~l~S~~~Fglgl 141 (180)
+++|.|.-.+=.|=+++.++..++|.+++.+.+.... .++-.|+.+++.+.++.+|+
T Consensus 8 ~~e~ki~~GlT~RQl~~l~~~~~~~~~~~~~~~~~l~---~~~~~~~~i~~~~p~~~~g~ 64 (93)
T PF12666_consen 8 KYEEKIFFGLTLRQLICLAIGALVGVGVYLLLWFFLG---PDIASWIMIPIALPFAFLGF 64 (93)
T ss_pred hccchhccCCCHHHHHHHHHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHhHh
Confidence 3444555456677788888888888777654433321 23334444444444444433
No 18
>TIGR00267 conserved hypothetical protein TIGR00267. This family is represented in three of the first four completed archaeal genomes, with two members in A. fulgidus.
Probab=49.38 E-value=27 Score=28.48 Aligned_cols=53 Identities=13% Similarity=-0.043 Sum_probs=27.8
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHhhhhcccccCccHHHHHHHHHHHHHhhhhhhhcccc
Q 030244 93 VRILVSVGVPLATGIASLHFFGVVKEKQLFDLPLWIPLVTTFLTFGLSAVGIAYGSLS 150 (180)
Q Consensus 93 rRm~~f~GiP~~lG~~~f~~~Y~L~~~~~~dvP~wv~~l~S~~~FglglLGiSYGiLS 150 (180)
...++..|+-.++|..+-.+-|++ .. ....+....-+..+.+.++|.-++.+|
T Consensus 89 ~~aAl~sgls~~~g~liPllp~~~-~~----~~~a~~~s~~~~~~~L~ilG~~~a~~s 141 (169)
T TIGR00267 89 YMSGFIDGFSTFMGSFVPVLPFLV-FD----RMTATIVTVLLTLIALLVLGVYLGRIS 141 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-cc----hhHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344888888888887554444544 11 111222222233344456666666654
No 19
>PF07214 DUF1418: Protein of unknown function (DUF1418); InterPro: IPR010815 This family consists of several hypothetical Enterobacterial proteins of around 100 residues in length. Members of this family are often described as YbjC. In Escherichia coli the ybjC gene is located downstream of nfsA (which encodes the major oxygen-insensitive nitroreductase). It is thought that nfsA and ybjC form an operon an its promoter is a class I SoxS-dependent promoter []. The function of this family is unknown.
Probab=49.29 E-value=31 Score=26.88 Aligned_cols=39 Identities=13% Similarity=0.198 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHhhhhcccccCccHH---HHHHHHHHHHHhhh
Q 030244 103 LATGIASLHFFGVVKEKQLFDLPLWI---PLVTTFLTFGLSAV 142 (180)
Q Consensus 103 ~~lG~~~f~~~Y~L~~~~~~dvP~wv---~~l~S~~~FglglL 142 (180)
=++||.++++.| |..++.+.+|.+. ...+.++|.|+++.
T Consensus 15 E~lG~~LLv~a~-Lsin~~l~LP~~l~~~~aai~MIf~Gi~lM 56 (96)
T PF07214_consen 15 EVLGMILLVLAY-LSINDYLSLPAPLSTPTAAIAMIFVGIGLM 56 (96)
T ss_pred HHHHHHHHHHHH-HHHcccccCcccccCchHHHHHHHHHHHHH
Confidence 357888888887 4577777888665 34566777777653
No 20
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=49.17 E-value=30 Score=28.79 Aligned_cols=29 Identities=7% Similarity=-0.003 Sum_probs=18.9
Q ss_pred hccccccCCcCCCCcccchHHHhhhHhhh
Q 030244 146 YGSLSSSWDAEKQGSLLGFEEAKQNWVEI 174 (180)
Q Consensus 146 YGiLSASWD~~r~GSlLG~eE~~~N~~rm 174 (180)
+-+++....++..|...|+-.+-.|++.+
T Consensus 405 ~~~~~~~~p~~~~~~~~~~~~~~~~lg~~ 433 (481)
T TIGR00879 405 WVIVSEIFPLSLRPKGISIAVAANWLANF 433 (481)
T ss_pred hhhhhccCChHHHHHHHHHHHHHHHHHHH
Confidence 33335555666678888888777776653
No 21
>PF02687 FtsX: FtsX-like permease family; InterPro: IPR003838 This domain is found in predicted permeases and hypothetical transmembrane proteins. P57382 from SWISSPROT has been shown to transport lipids targeted to the outer membrane across the inner membrane. Both P57382 and O54500 from SWISSPROT have been shown to require ATP. This domain contains three transmembrane helices.; GO: 0016020 membrane
Probab=49.16 E-value=87 Score=21.68 Aligned_cols=59 Identities=12% Similarity=0.194 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhh---------hcccccCccHHHHHHHHHHHHHhhhh
Q 030244 85 QVVLERIIVRILVSVGVPLATGIASLHFFGVVK---------EKQLFDLPLWIPLVTTFLTFGLSAVG 143 (180)
Q Consensus 85 evVs~RM~rRm~~f~GiP~~lG~~~f~~~Y~L~---------~~~~~dvP~wv~~l~S~~~FglglLG 143 (180)
..+...++...++.+.+...+|.......+..- ......++.+..+.+.++.+.+.++.
T Consensus 41 ~~i~~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 108 (121)
T PF02687_consen 41 RQIRKMFLYEALLIALIGILIGILLGILLIIFLINFLSKFFGDSFPFTISPWSFLIVFIIILLISIIA 108 (121)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccceeeeeCHHHHHHHHHHHHHHHHHH
Confidence 456666777777777777777766443222221 33455666666666666666555544
No 22
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=48.36 E-value=16 Score=32.47 Aligned_cols=49 Identities=8% Similarity=0.074 Sum_probs=22.1
Q ss_pred HhhhhcccccCccHHHHHHHHHHHHHhhhhhhhccccccCCcCCCCcccch
Q 030244 114 GVVKEKQLFDLPLWIPLVTTFLTFGLSAVGIAYGSLSSSWDAEKQGSLLGF 164 (180)
Q Consensus 114 Y~L~~~~~~dvP~wv~~l~S~~~FglglLGiSYGiLSASWD~~r~GSlLG~ 164 (180)
|++.+-+.+.|=+.+.+++.++.+...++-+.+-++..-|. -++.+-+|
T Consensus 27 yv~i~~~~~~ie~sl~~~~~~~~~~~~~~~~~~~~~~~~~~--~p~~~~~~ 75 (398)
T PRK10747 27 YVLIQTDNYNIETSVTGLAIILILAMVVLFAIEWLLRRIFR--TGARTRGW 75 (398)
T ss_pred eEEEEECCEEEEehHHHHHHHHHHHHHHHHHHHHHHHHHHh--cchhhhHH
Confidence 55555455555444444444443333333333444444444 23444444
No 23
>COG1814 Uncharacterized membrane protein [Function unknown]
Probab=47.89 E-value=38 Score=28.77 Aligned_cols=69 Identities=12% Similarity=0.061 Sum_probs=45.5
Q ss_pred CCCCCCccHHH-HHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhcccccCccHHHHHHHHHHHHHhhhhhhhcccc
Q 030244 77 NSDEDHLPQVV-LERIIVRILVSVGVPLATGIASLHFFGVVKEKQLFDLPLWIPLVTTFLTFGLSAVGIAYGSLS 150 (180)
Q Consensus 77 ~~~~~~IPevV-s~RM~rRm~~f~GiP~~lG~~~f~~~Y~L~~~~~~dvP~wv~~l~S~~~FglglLGiSYGiLS 150 (180)
..++..|.+.. +.++..-. +.+|+-.++|.++..+-|++...... ..+..+....+.++++|+-+|.+|
T Consensus 127 ~~~~~~i~~~~~~~~~~~~~-l~sg~s~~~G~l~Pllp~~~~~~~~~----al~~si~~~~l~L~ilG~~~a~~s 196 (229)
T COG1814 127 GRLSMGIGAYLSSRPLLAAT-LSSGISFIIGALLPLLPFFFLPDVLS----ALIASIILALLALAILGAVLARLS 196 (229)
T ss_pred HHHHHHHHHHhhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhHH----HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34556677777 35555543 57888888888887766666554311 125555567777889998888776
No 24
>PF08566 Pam17: Mitochondrial import protein Pam17; InterPro: IPR013875 The presequence translocase-associated motor (PAM) drives the completion of preprotein translocation into the mitochondrial matrix. The Pam17 subunit is required for formation of a stable complex between cochaperones Pam16 and Pam18 and promotes the association of Pam16-Pam18 with the presequence translocase []. Mitochondria lacking Pam17 are selectively impaired in the import of matrix proteins [].
Probab=46.94 E-value=47 Score=28.22 Aligned_cols=28 Identities=14% Similarity=0.018 Sum_probs=22.0
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 030244 89 ERIIVRILVSVGVPLATGIASLHFFGVV 116 (180)
Q Consensus 89 ~RM~rRm~~f~GiP~~lG~~~f~~~Y~L 116 (180)
+|==||+...++||++++-+.....|+.
T Consensus 34 Rk~rrr~~~~~si~t~~~g~~~g~~yl~ 61 (173)
T PF08566_consen 34 RKSRRRINLVSSIPTGLLGSSAGWAYLS 61 (173)
T ss_pred HHHhhHHHHHhHHHHHHHHHHHHHHHHh
Confidence 3445788999999999988877777765
No 25
>PF03176 MMPL: MMPL family; InterPro: IPR004869 Proteins of this entry are putative integral membrane proteins from bacteria. Several of the members are mycobacterial proteins. Many of the proteins contain two copies of this aligned region. The function of these proteins is not known, although it has been suggested that they may be involved in lipid transport [].; GO: 0016020 membrane
Probab=46.89 E-value=31 Score=29.53 Aligned_cols=6 Identities=50% Similarity=0.927 Sum_probs=3.3
Q ss_pred hhhhcc
Q 030244 143 GIAYGS 148 (180)
Q Consensus 143 GiSYGi 148 (180)
|+.|++
T Consensus 215 gidy~i 220 (333)
T PF03176_consen 215 GIDYSI 220 (333)
T ss_pred hhhhHH
Confidence 555555
No 26
>PF06781 UPF0233: Uncharacterised protein family (UPF0233); InterPro: IPR009619 This is a group of proteins of unknown function.
Probab=46.34 E-value=26 Score=26.61 Aligned_cols=39 Identities=13% Similarity=0.188 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHhhhhc--ccccCccHHHHHHHHHHHHHhhh
Q 030244 103 LATGIASLHFFGVVKEK--QLFDLPLWIPLVTTFLTFGLSAV 142 (180)
Q Consensus 103 ~~lG~~~f~~~Y~L~~~--~~~dvP~wv~~l~S~~~FglglL 142 (180)
+.+|++-.++||+-..+ ..-++-.|=.+++ +++..+|++
T Consensus 41 mllGL~WiVvyYi~~~~i~pi~~lG~WN~~IG-fg~~~~Gf~ 81 (87)
T PF06781_consen 41 MLLGLLWIVVYYISGGQIPPIPDLGNWNLAIG-FGLMIVGFL 81 (87)
T ss_pred HHHHHHHHhhhhcccCCCCCcccccchHHHHH-HHHHHHHHH
Confidence 56777777777765554 3345666755433 444444443
No 27
>PF06181 DUF989: Protein of unknown function (DUF989); InterPro: IPR010389 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=45.75 E-value=30 Score=31.79 Aligned_cols=39 Identities=18% Similarity=0.293 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHh------hhhcccccCccHHHHHHHHHHHHHhhh
Q 030244 104 ATGIASLHFFGV------VKEKQLFDLPLWIPLVTTFLTFGLSAV 142 (180)
Q Consensus 104 ~lG~~~f~~~Y~------L~~~~~~dvP~wv~~l~S~~~FglglL 142 (180)
..|+++|.+.|| |.+....|+.+|+..+.|+++..+|-+
T Consensus 91 lSGfaLl~~~Yy~~a~~yLiDp~v~~ls~~~Ai~isl~~l~~gWl 135 (300)
T PF06181_consen 91 LSGFALLIVVYYFNAELYLIDPSVMDLSPWQAIAISLGSLVLGWL 135 (300)
T ss_pred HHHHHHHHHHHHhCCceEEECCcccCCCHHHHHHHHHHHHHHHHH
Confidence 568888876666 678888999999999999888877754
No 28
>PF09527 ATPase_gene1: Putative F0F1-ATPase subunit (ATPase_gene1)
Probab=45.73 E-value=87 Score=20.68 Aligned_cols=41 Identities=12% Similarity=0.149 Sum_probs=22.9
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHhhhhcccccCccHHHHHHHHHHH
Q 030244 92 IVRILVSVGVPLATGIASLHFFGVVKEKQLFDLPLWIPLVTTFLTF 137 (180)
Q Consensus 92 ~rRm~~f~GiP~~lG~~~f~~~Y~L~~~~~~dvP~wv~~l~S~~~F 137 (180)
...+++...+|+++|+.+- |++...-.. .+|..++..++=+
T Consensus 3 ~~~lg~~~~~~i~~g~~~G---~~lD~~~~t--~p~~~~~g~llG~ 43 (55)
T PF09527_consen 3 ASQLGFTMAAPILVGFFLG---YWLDKWFGT--SPWFTLIGLLLGI 43 (55)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHcCC--ChHHHHHHHHHHH
Confidence 4455556666666665443 666666533 5777665543333
No 29
>COG3090 DctM TRAP-type C4-dicarboxylate transport system, small permease component [Carbohydrate transport and metabolism]
Probab=45.65 E-value=1e+02 Score=25.18 Aligned_cols=73 Identities=25% Similarity=0.380 Sum_probs=50.9
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhcccc-cCccHHHHHHHHHHHHHhhhhhhhccccccCCcCCCCcccchHH
Q 030244 88 LERIIVRILVSVGVPLATGIASLHFFGVVKEKQLF-DLPLWIPLVTTFLTFGLSAVGIAYGSLSSSWDAEKQGSLLGFEE 166 (180)
Q Consensus 88 s~RM~rRm~~f~GiP~~lG~~~f~~~Y~L~~~~~~-dvP~wv~~l~S~~~FglglLGiSYGiLSASWD~~r~GSlLG~eE 166 (180)
..+-+.|+.-..+.....+|...++ +-+..|..+ +-+.|.==++-+++--+..+|++||+ |++.=+|.+-
T Consensus 8 ~~~~~~~~l~~v~~~ll~~m~~iv~-~~V~~Ry~~~~~~~WseElar~lfvwl~flGa~~~~--------r~~~Hi~vd~ 78 (177)
T COG3090 8 LGKAIDRLLEAVAAALLAAMVLIVF-LQVFTRYVFNSPISWSEELARLLFVWLIFLGAAYGV--------REGGHIGVDV 78 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHHHHh--------ccCCeeeehH
Confidence 3555677888888877777776443 344444445 55778888888888889999999997 4566666665
Q ss_pred Hhh
Q 030244 167 AKQ 169 (180)
Q Consensus 167 ~~~ 169 (180)
+..
T Consensus 79 l~~ 81 (177)
T COG3090 79 LVN 81 (177)
T ss_pred HHH
Confidence 544
No 30
>PRK10591 hypothetical protein; Provisional
Probab=45.45 E-value=42 Score=26.03 Aligned_cols=38 Identities=13% Similarity=0.162 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHhhhhcccccCccHH---HHHHHHHHHHHhhh
Q 030244 104 ATGIASLHFFGVVKEKQLFDLPLWI---PLVTTFLTFGLSAV 142 (180)
Q Consensus 104 ~lG~~~f~~~Y~L~~~~~~dvP~wv---~~l~S~~~FglglL 142 (180)
++||..+++.|+ ..++.+.+|.|. ..++.++|.|+|+.
T Consensus 16 ~lGi~LLv~a~L-sindyl~lP~~l~~~~aai~mif~Gi~lm 56 (92)
T PRK10591 16 VLGMLLLVVAYL-SLNDYLSLPEPLSTPTAAILMIFLGVLLM 56 (92)
T ss_pred HHHHHHHHHHHH-HHcccccCCccccCchHHHHHHHHHHHHh
Confidence 578888888765 556677888775 34566677777653
No 31
>PF06728 PIG-U: GPI transamidase subunit PIG-U; InterPro: IPR009600 Many eukaryotic proteins are anchored to the cell surface via glycosylphosphatidylinositol (GPI), which is posttranslationally attached to the C terminus by GPI transamidase. The mammalian GPI transamidase is a complex of at least four subunits, GPI8, GAA1, PIG-S, and PIG-T. PIG-U is thought to represent a fifth subunit in this complex and may be involved in the recognition of either the GPI attachment signal or the lipid portion of GPI [].; GO: 0006506 GPI anchor biosynthetic process, 0005789 endoplasmic reticulum membrane, 0016021 integral to membrane
Probab=45.41 E-value=17 Score=33.09 Aligned_cols=48 Identities=17% Similarity=0.362 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHhhhhhhhccccccCCcC--CCCcccchHHHhhhHhhhc
Q 030244 127 WIPLVTTFLTFGLSAVGIAYGSLSSSWDAE--KQGSLLGFEEAKQNWVEIW 175 (180)
Q Consensus 127 wv~~l~S~~~FglglLGiSYGiLSASWD~~--r~GSlLG~eE~~~N~~rmw 175 (180)
.+..++.+....++++.+||- +..|||-- .=|..+-.+....|+|-.|
T Consensus 214 ~~~~~~~f~~~~~~L~~~S~~-~~~sw~fl~~ty~~~l~~~dltPNlGl~W 263 (382)
T PF06728_consen 214 FLQILLIFIASLAALLLLSYL-ITGSWNFLDSTYGFILTVPDLTPNLGLWW 263 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HcCChHHHHHHHHHhhcccCCCCCcchHH
Confidence 334444445555667779999 88899943 3477788888889999887
No 32
>PF13630 SdpI: SdpI/YhfL protein family
Probab=44.60 E-value=98 Score=20.98 Aligned_cols=25 Identities=16% Similarity=0.074 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHH
Q 030244 86 VVLERIIVRILVSVGVPLATGIASL 110 (180)
Q Consensus 86 vVs~RM~rRm~~f~GiP~~lG~~~f 110 (180)
.-+||...++.+..|+.+.+.-.++
T Consensus 24 ~~a~r~~g~~~~~~Gi~~~~~~~~~ 48 (76)
T PF13630_consen 24 KKAHRFAGKIFIIGGIVLLIIGIII 48 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3579999999998888865554443
No 33
>PRK11876 petM cytochrome b6-f complex subunit PetM; Reviewed
Probab=44.43 E-value=20 Score=22.95 Aligned_cols=21 Identities=33% Similarity=0.347 Sum_probs=17.3
Q ss_pred HHHHHHHHHHhhhhhhhcccc
Q 030244 130 LVTTFLTFGLSAVGIAYGSLS 150 (180)
Q Consensus 130 ~l~S~~~FglglLGiSYGiLS 150 (180)
+-+..++|++-++|++-|++.
T Consensus 6 f~~A~i~~~LvlvGlalGf~L 26 (32)
T PRK11876 6 FGIAALFWVLIPVGLAGGALL 26 (32)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 456778999999999999875
No 34
>PRK09669 putative symporter YagG; Provisional
Probab=44.40 E-value=18 Score=31.60 Aligned_cols=74 Identities=15% Similarity=0.149 Sum_probs=41.1
Q ss_pred HHHHhhhhhHHHHHHHHHHHHhhhhcccccCccHHHHHHHHHHH--HHhhhhhhhccccccC--CcCCCCcccchHHHhh
Q 030244 94 RILVSVGVPLATGIASLHFFGVVKEKQLFDLPLWIPLVTTFLTF--GLSAVGIAYGSLSSSW--DAEKQGSLLGFEEAKQ 169 (180)
Q Consensus 94 Rm~~f~GiP~~lG~~~f~~~Y~L~~~~~~dvP~wv~~l~S~~~F--glglLGiSYGiLSASW--D~~r~GSlLG~eE~~~ 169 (180)
..++..++|.++.+... ++. -. .-.....+.+++..++| +.++..+.|+.|.+.| |+++.+++-++..+-.
T Consensus 81 p~il~~~~~~~i~~~l~--f~~-p~--~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~ 155 (444)
T PRK09669 81 PYLLWFAIPFGVVCLLT--FYT-PD--FGATGKIIYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALS 155 (444)
T ss_pred hhHHHHHHHHHHHHHHH--HhC-CC--CCcchHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHH
Confidence 34556667777665432 221 10 00111123333333333 3446888899998876 5566678888887777
Q ss_pred hHh
Q 030244 170 NWV 172 (180)
Q Consensus 170 N~~ 172 (180)
|++
T Consensus 156 ~~G 158 (444)
T PRK09669 156 FIG 158 (444)
T ss_pred HHH
Confidence 765
No 35
>PF06496 DUF1097: Protein of unknown function (DUF1097); InterPro: IPR009476 This family consists of several bacterial putative membrane proteins.
Probab=44.25 E-value=25 Score=27.73 Aligned_cols=35 Identities=17% Similarity=0.130 Sum_probs=23.0
Q ss_pred HHHHHHHHHHhhhhcccccCccHHHHHHHHHHHHHh
Q 030244 105 TGIASLHFFGVVKEKQLFDLPLWIPLVTTFLTFGLS 140 (180)
Q Consensus 105 lG~~~f~~~Y~L~~~~~~dvP~wv~~l~S~~~Fglg 140 (180)
++++++...+... ...+.+|.|+.|+.-..+|..|
T Consensus 2 l~~gil~~~w~~~-a~~~~l~~W~~Figwa~yfa~G 36 (144)
T PF06496_consen 2 LSIGILAGLWAWL-APALGLPGWAGFIGWASYFAAG 36 (144)
T ss_pred hhHHHHHHHHHHH-HHHcCchHHHHHHHHHHHHHcC
Confidence 3444444333333 5567889999999988888764
No 36
>PRK08386 putative monovalent cation/H+ antiporter subunit B; Reviewed
Probab=42.77 E-value=49 Score=26.90 Aligned_cols=37 Identities=16% Similarity=0.185 Sum_probs=25.6
Q ss_pred ccHHHHHHHHHHHHHhhhhhhhccccccCCcCCCCcccc
Q 030244 125 PLWIPLVTTFLTFGLSAVGIAYGSLSSSWDAEKQGSLLG 163 (180)
Q Consensus 125 P~wv~~l~S~~~FglglLGiSYGiLSASWD~~r~GSlLG 163 (180)
+..+..+.-+++.+.|++|+-+|+|...|.. ++.++|
T Consensus 68 ~~~l~~~Gll~~~~~gl~~l~~gfl~~~~~~--~~~~l~ 104 (151)
T PRK08386 68 YSALEGLGGLVFLGAAMLGISVAFFYNILWH--TGPLFG 104 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--cccccc
Confidence 3345556677788899999999966666664 455555
No 37
>PF03613 EIID-AGA: PTS system mannose/fructose/sorbose family IID component; InterPro: IPR004704 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine,N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IID subunits of this family of PTS transporters.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane
Probab=42.22 E-value=48 Score=29.28 Aligned_cols=42 Identities=17% Similarity=0.120 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHHHhhhhcccccCccHHHHHHHHHHHHHhhhhh
Q 030244 102 PLATGIASLHFFGVVKEKQLFDLPLWIPLVTTFLTFGLSAVGI 144 (180)
Q Consensus 102 P~~lG~~~f~~~Y~L~~~~~~dvP~wv~~l~S~~~FglglLGi 144 (180)
|-.+.+++..+.|++..+..+. |.++.++.-.+.+.++++||
T Consensus 222 P~lLpl~~~~~~y~ll~kk~~~-~~~~i~~~~vi~iv~~~~Gi 263 (264)
T PF03613_consen 222 PGLLPLLLTLLVYWLLKKKKVS-PTKLILIIIVIGIVGAALGI 263 (264)
T ss_pred hhHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHHHHhcc
Confidence 3344444444445554444444 55666555555555555554
No 38
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=42.11 E-value=32 Score=29.28 Aligned_cols=74 Identities=20% Similarity=0.198 Sum_probs=39.5
Q ss_pred HHHhhhhhHHHHHHHHHHHHhhhhcccccCccHHHHHHHHHHHH--HhhhhhhhccccccC--CcCCCCcccchHHHhhh
Q 030244 95 ILVSVGVPLATGIASLHFFGVVKEKQLFDLPLWIPLVTTFLTFG--LSAVGIAYGSLSSSW--DAEKQGSLLGFEEAKQN 170 (180)
Q Consensus 95 m~~f~GiP~~lG~~~f~~~Y~L~~~~~~dvP~wv~~l~S~~~Fg--lglLGiSYGiLSASW--D~~r~GSlLG~eE~~~N 170 (180)
+.+...++.++++..+.. .-.. ......+.+++..++++ .++..+.|..+.+.. |+++.+.+.|+.++-.+
T Consensus 72 ~i~~~~~~~~i~~~~~~~---~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~ 146 (437)
T TIGR00792 72 WLLIGAIPFSIVLVLLFT---TPDF--SATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGAT 146 (437)
T ss_pred hHHHhHHHHHHHHHHHHh---CCCC--CcchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHH
Confidence 556666777766554421 1110 00011222333333333 345667787777664 56677888888887766
Q ss_pred Hhh
Q 030244 171 WVE 173 (180)
Q Consensus 171 ~~r 173 (180)
++-
T Consensus 147 ~g~ 149 (437)
T TIGR00792 147 LGG 149 (437)
T ss_pred HHH
Confidence 653
No 39
>PLN02220 delta-9 acyl-lipid desaturase
Probab=41.78 E-value=57 Score=29.40 Aligned_cols=22 Identities=14% Similarity=0.437 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHhhhhhhhcc
Q 030244 127 WIPLVTTFLTFGLSAVGIAYGS 148 (180)
Q Consensus 127 wv~~l~S~~~FglglLGiSYGi 148 (180)
|..++..++++.++.+||+-|.
T Consensus 55 w~~~~~~~~~~~it~lGiT~Gy 76 (299)
T PLN02220 55 WEALRFGLILYIVTGLSITFSY 76 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666777777788888763
No 40
>PF01788 PsbJ: PsbJ; InterPro: IPR002682 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbJ found in PSII. PsbJ is one of the most hydrophobic proteins in the thylakoid membrane, and is located in a gene cluster with PsbE, PsbF and PsbL (PsbEFJL). Both PsbJ and PsbL (IPR003372 from INTERPRO) are essential for proper assembly of the OEC. Mutations in PsbJ cause the light-harvesting antenna to remain detached from the PSII dimers []. In addition, both PsbJ and PsbL are involved in the unidirectional flow of electrons, where PsbJ regulates the forward electron flow from D2 (Qa) to the plastoquinone pool, and PsbL prevents the reduction of PSII by back electron flow from plastoquinol protecting PSII from photo-inactivation [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_J 3ARC_J 3A0B_J 3KZI_J 2AXT_J 3PRQ_J 4FBY_b 3BZ2_J 1S5L_j 3PRR_J ....
Probab=41.35 E-value=28 Score=23.36 Aligned_cols=23 Identities=22% Similarity=0.281 Sum_probs=16.3
Q ss_pred ccCccHHHHHHHHHHHHHhhhhhh
Q 030244 122 FDLPLWIPLVTTFLTFGLSAVGIA 145 (180)
Q Consensus 122 ~dvP~wv~~l~S~~~FglglLGiS 145 (180)
-.+|.|++..+ .++..++++||-
T Consensus 6 GRIPLWlVgtv-~G~~vi~lvglF 28 (40)
T PF01788_consen 6 GRIPLWLVGTV-AGIAVIGLVGLF 28 (40)
T ss_dssp TSS-HHHHHHH-HHHHHHHHHHHH
T ss_pred CcccchHHHHH-HHHHHHHHHHHh
Confidence 36899987544 568888999973
No 41
>PF11026 DUF2721: Protein of unknown function (DUF2721); InterPro: IPR021279 This family is conserved in bacteria. The function is not known.
Probab=40.13 E-value=94 Score=24.27 Aligned_cols=22 Identities=23% Similarity=0.073 Sum_probs=13.1
Q ss_pred ccCccHHHHHHHHHHHHHhhhh
Q 030244 122 FDLPLWIPLVTTFLTFGLSAVG 143 (180)
Q Consensus 122 ~dvP~wv~~l~S~~~FglglLG 143 (180)
.+...++.|..+++++.+|++-
T Consensus 93 ~~~~~~~lF~~am~~l~~sl~~ 114 (130)
T PF11026_consen 93 LSWLVAILFVLAMLLLIASLVL 114 (130)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455666777777666654
No 42
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=39.74 E-value=64 Score=25.73 Aligned_cols=25 Identities=48% Similarity=0.790 Sum_probs=14.0
Q ss_pred HHHHHHHHHhhhhhHH-HHHHHHHHH
Q 030244 89 ERIIVRILVSVGVPLA-TGIASLHFF 113 (180)
Q Consensus 89 ~RM~rRm~~f~GiP~~-lG~~~f~~~ 113 (180)
.|.+.=+++..|+-++ .|++.++++
T Consensus 4 ~~i~~i~~iilgilli~~gI~~Lv~~ 29 (191)
T PF04156_consen 4 QRIISIILIILGILLIASGIAALVLF 29 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666777777643 344444443
No 43
>PF13903 Claudin_2: PMP-22/EMP/MP20/Claudin tight junction
Probab=39.41 E-value=1.6e+02 Score=21.98 Aligned_cols=26 Identities=4% Similarity=-0.067 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHH
Q 030244 85 QVVLERIIVRILVSVGVPLATGIASL 110 (180)
Q Consensus 85 evVs~RM~rRm~~f~GiP~~lG~~~f 110 (180)
+.....+.+.+.++..+-+++.+.-+
T Consensus 61 ~~~~~~~~~~~~~~~~l~~~~~~~a~ 86 (172)
T PF13903_consen 61 ETTNPHWMRATIAFLILGLLLLLFAF 86 (172)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555566666666666555554433
No 44
>COG0713 NuoK NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) [Energy production and conversion]
Probab=39.02 E-value=28 Score=27.37 Aligned_cols=21 Identities=29% Similarity=0.467 Sum_probs=17.9
Q ss_pred CccHHHHHHHHHHHHHhhhhh
Q 030244 124 LPLWIPLVTTFLTFGLSAVGI 144 (180)
Q Consensus 124 vP~wv~~l~S~~~FglglLGi 144 (180)
+|....++.+.++|.+|+.|+
T Consensus 2 i~l~~~l~laa~LF~IGl~Gv 22 (100)
T COG0713 2 IPLQHYLILAALLFTIGLYGL 22 (100)
T ss_pred chHHHHHHHHHHHHHHHHHHH
Confidence 467778899999999999886
No 45
>TIGR00145 FTR1 family protein. A characterized member from yeast acts as oxidase-coupled high affinity iron transporter. Note that the apparent member from E. coli K12-MG1655 has a frameshift by homology with member sequences from other species.
Probab=38.79 E-value=65 Score=28.72 Aligned_cols=48 Identities=17% Similarity=0.095 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHhhhhcccccCccHHHHHHHHH---HHHHhhhh------hhhcccc
Q 030244 103 LATGIASLHFFGVVKEKQLFDLPLWIPLVTTFL---TFGLSAVG------IAYGSLS 150 (180)
Q Consensus 103 ~~lG~~~f~~~Y~L~~~~~~dvP~wv~~l~S~~---~FglglLG------iSYGiLS 150 (180)
.++|++...+.+++..+....+|.-..|.+|.+ +++.|++| ...|.+.
T Consensus 157 ~~~Gl~~~~~~g~li~~~~~~i~l~~FF~~t~~lL~llAagl~~~gv~~lq~ag~l~ 213 (283)
T TIGR00145 157 AVAGLIVAVVVGVLLYRGGSRLSLKIFFILSSSLLLFIAAGLLGGGNHRFNLAGGGD 213 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC
Confidence 456677777777777777788887777766644 35667777 5666554
No 46
>PRK10249 phenylalanine transporter; Provisional
Probab=38.42 E-value=39 Score=30.65 Aligned_cols=72 Identities=14% Similarity=0.032 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhcccccCccHHHHHHHHHHHHHhhhhhhhccccccCCcCCCCcccch
Q 030244 87 VLERIIVRILVSVGVPLATGIASLHFFGVVKEKQLFDLPLWIPLVTTFLTFGLSAVGIAYGSLSSSWDAEKQGSLLGF 164 (180)
Q Consensus 87 Vs~RM~rRm~~f~GiP~~lG~~~f~~~Y~L~~~~~~dvP~wv~~l~S~~~FglglLGiSYGiLSASWD~~r~GSlLG~ 164 (180)
..+++=.|-+...++=..+|.+.|........... | .+.+.--++.+..-+++++|+=|++.... .|++--|
T Consensus 19 l~r~l~~~~~~~i~ig~~IGsGif~~~g~~~~~aG---p-~~~l~~li~~~~~~~~~~~~aEl~~~~P~--~Gg~~~y 90 (458)
T PRK10249 19 LHRGLHNRHIQLIALGGAIGTGLFLGIGPAIQMAG---P-AVLLGYGVAGIIAFLIMRQLGEMVVEEPV--SGSFAHF 90 (458)
T ss_pred hhccCcHhHhhhhhhhcccchhHHHHHHHHHHhcC---c-HHHHHHHHHHHHHHHHHHHHHHHHHhCCC--CCCHHHH
Confidence 33444456667777777888888876665544432 2 22222223444556788999999998763 5776544
No 47
>PF07589 VPEP: PEP-CTERM motif; InterPro: IPR013424 This entry describes a 25-residue region including an invariant Pro-Glu-Pro (PEP) motif, a thirteen residue strongly hydrophobic sequence likely to span the membrane, and a five-residue strongly basic motif that often contains four Arg residues. In most cases, this motif is found within nine residues of the C-terminal end of the protein. Proteins containing this motif typically have signal sequences at the N terminus [].
Probab=37.39 E-value=27 Score=20.68 Aligned_cols=14 Identities=36% Similarity=0.774 Sum_probs=9.7
Q ss_pred HHHHHHHhhhhhhh
Q 030244 133 TFLTFGLSAVGIAY 146 (180)
Q Consensus 133 S~~~FglglLGiSY 146 (180)
++++|++|++|+..
T Consensus 7 t~~l~~~gl~~l~~ 20 (25)
T PF07589_consen 7 TLALLGLGLLGLAF 20 (25)
T ss_pred HHHHHHHHHHHHHH
Confidence 35677777777765
No 48
>COG3716 ManZ Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID [Carbohydrate transport and metabolism]
Probab=35.97 E-value=57 Score=29.57 Aligned_cols=42 Identities=29% Similarity=0.346 Sum_probs=24.7
Q ss_pred hHHHHHHHHHHHHhhhhcccccCccHHHHHHHHHHHHHhhhhhhhccc
Q 030244 102 PLATGIASLHFFGVVKEKQLFDLPLWIPLVTTFLTFGLSAVGIAYGSL 149 (180)
Q Consensus 102 P~~lG~~~f~~~Y~L~~~~~~dvP~wv~~l~S~~~FglglLGiSYGiL 149 (180)
|-.+.+++..+.|||..+ ++. |.|+. +++|.+|++|---|+|
T Consensus 228 Pgllpl~~t~~~~wLl~K-kv~-p~~iI----~~~~vigIvg~~lGil 269 (269)
T COG3716 228 PGLLPLLLTLLMYWLLRK-KVN-PTWLI----LGTFVLGIVGSALGIL 269 (269)
T ss_pred hhHHHHHHHHHHHHHHcc-CCc-hHHHH----HHHHHHHHHHHHhccC
Confidence 445555544444454443 232 56665 4778888888777765
No 49
>PF10823 DUF2568: Protein of unknown function (DUF2568); InterPro: IPR021214 One member in this family is annotated as yrdB which is part of a four gene operon however currently no function is known.
Probab=35.84 E-value=1.3e+02 Score=22.75 Aligned_cols=52 Identities=25% Similarity=0.274 Sum_probs=39.7
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHhhhhcccccCccHHHHHHHHHHHHHhhhhh
Q 030244 90 RIIVRILVSVGVPLATGIASLHFFGVVKEKQLFDLPLWIPLVTTFLTFGLSAVGI 144 (180)
Q Consensus 90 RM~rRm~~f~GiP~~lG~~~f~~~Y~L~~~~~~dvP~wv~~l~S~~~FglglLGi 144 (180)
.+..|+++..++|....+.=- .+.--+....+|...-++.-.+.|+++.+++
T Consensus 24 ~~~~~~~l~i~~p~~~a~~Wg---~f~APka~~rl~~~~rl~le~~vF~~~~~al 75 (93)
T PF10823_consen 24 GWWWKILLAIGLPLLAAVLWG---LFGAPKAPRRLPGPARLLLELAVFGLAAAAL 75 (93)
T ss_pred chHHHHHHHHHHHHHHHHHHH---HHcCCCCcccCccHHHHHHHHHHHHHHHHHH
Confidence 456788888888877665432 4455666778999999999999999988764
No 50
>PRK03893 putative sialic acid transporter; Provisional
Probab=34.16 E-value=56 Score=28.51 Aligned_cols=35 Identities=20% Similarity=0.263 Sum_probs=22.8
Q ss_pred HHhhhhhhhccccccCCcCCCCcccchHHHhhhHh
Q 030244 138 GLSAVGIAYGSLSSSWDAEKQGSLLGFEEAKQNWV 172 (180)
Q Consensus 138 glglLGiSYGiLSASWD~~r~GSlLG~eE~~~N~~ 172 (180)
+.|..++.+.+++...++++.|+..|+-..-.+++
T Consensus 380 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g 414 (496)
T PRK03893 380 GQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALG 414 (496)
T ss_pred hcccchhhHHHHHhhCCHHHhhcccchhhhhhhHH
Confidence 33333445556677778888899999866655544
No 51
>PF03806 ABG_transport: AbgT putative transporter family; InterPro: IPR004697 The p-aminobenzoyl-glutamate transporter family includes two putative transporters, the AbgT protein of Escherichia coli and MtrF of Neisseria gonorrhoeae. AbgT expression is apparently cryptic in wild type cells, but when present on a high copy number plasmid, or when expressed at higher levels due to mutation, it allows utilization of p-aminobenzoyl-glutamate as a source of p-aminobenzoate for p-aminobenzoate auxotrophs []. p-Aminobenzoate is a constituent of, and a precursor for, the biosynthesis of folic acid. It is not currently known if AbgT is naturally involved in transporting p-aminobenzoyl-glutamate, or if it only becomes involved when under altered regulation. MtrF is an inner membrane protein which, together with the MtrCDE efflux pump, is required for high-level resistance to hydrophobic antimicrobial agents in N. gonorrhoeae []. Its role in this process is not known, but it has been suggested that it may be a component of the efflux pump which is dispensible for basal activity, but required for high-level activity [].
Probab=33.62 E-value=1.2e+02 Score=29.57 Aligned_cols=26 Identities=19% Similarity=0.347 Sum_probs=19.3
Q ss_pred HHHHHHHHHhhhhhhhccccccCCcC
Q 030244 131 VTTFLTFGLSAVGIAYGSLSSSWDAE 156 (180)
Q Consensus 131 l~S~~~FglglLGiSYGiLSASWD~~ 156 (180)
++-.++|...+.|+.||+.|....-+
T Consensus 299 IIpiI~l~F~i~GivYG~~sG~iks~ 324 (502)
T PF03806_consen 299 IIPIIFLFFLIPGIVYGIASGTIKSD 324 (502)
T ss_pred HHHHHHHHHHHHHHHHhhhhceecCH
Confidence 44456667789999999999876543
No 52
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=32.30 E-value=30 Score=30.85 Aligned_cols=48 Identities=8% Similarity=-0.055 Sum_probs=20.5
Q ss_pred Hhhhhcccc--cCccHHHHHHHHHHHHHhhhhhhhccccccCCcCCCCcccchH
Q 030244 114 GVVKEKQLF--DLPLWIPLVTTFLTFGLSAVGIAYGSLSSSWDAEKQGSLLGFE 165 (180)
Q Consensus 114 Y~L~~~~~~--dvP~wv~~l~S~~~FglglLGiSYGiLSASWD~~r~GSlLG~e 165 (180)
|++.+-..+ |...|+.+++-+++| .++-+-+.+++.-|.- ++.+-+|-
T Consensus 27 yv~i~~~~~~ie~s~~~~~~~~~~~~--~~~~~~~~l~~~~~~~--p~~~~~~~ 76 (409)
T TIGR00540 27 YVLIETANRIIEMSITGLAIFFIIAL--AIIFAFEWGLRRFFRL--GAHSRGWF 76 (409)
T ss_pred eEEEEECCEEEEeeHHHHHHHHHHHH--HHHHHHHHHHHHHHHc--cHHHHHHH
Confidence 455554444 444444444433333 3332334455444442 34444443
No 53
>PRK00159 putative septation inhibitor protein; Reviewed
Probab=31.87 E-value=95 Score=23.78 Aligned_cols=39 Identities=18% Similarity=0.144 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHhhhhcccc--cCccHHHHHHHHHHHHHhhh
Q 030244 103 LATGIASLHFFGVVKEKQLF--DLPLWIPLVTTFLTFGLSAV 142 (180)
Q Consensus 103 ~~lG~~~f~~~Y~L~~~~~~--dvP~wv~~l~S~~~FglglL 142 (180)
+.+|++-+++||+-...-.+ ++-.|=. ++-++++.+|++
T Consensus 41 m~~GllWlvvyYl~~~~~P~m~~lG~WN~-~IGFg~~i~G~l 81 (87)
T PRK00159 41 MLIGLAWLVVNYLAGPAIPWMADLGPWNY-AIGFALMITGLL 81 (87)
T ss_pred HHHHHHHHHHHhhccCCCCCCcccCchhH-HHHHHHHHHHHH
Confidence 45788887888875433332 5567744 333555555543
No 54
>KOG3882 consensus Tetraspanin family integral membrane protein [General function prediction only]
Probab=31.84 E-value=71 Score=26.24 Aligned_cols=23 Identities=22% Similarity=0.366 Sum_probs=20.0
Q ss_pred ccCccHHHHHHHHHHHHHhhhhh
Q 030244 122 FDLPLWIPLVTTFLTFGLSAVGI 144 (180)
Q Consensus 122 ~dvP~wv~~l~S~~~FglglLGi 144 (180)
+..+.|+.+++..+.|.+|++|.
T Consensus 49 ~~~~~~ili~~G~v~~~v~flGc 71 (237)
T KOG3882|consen 49 FLVPAYILIAVGGVVFLVGFLGC 71 (237)
T ss_pred hhcchhhhhhhhHHHHHHHHhhh
Confidence 35689999999999999999995
No 55
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=30.71 E-value=1.4e+02 Score=24.57 Aligned_cols=48 Identities=15% Similarity=0.171 Sum_probs=27.2
Q ss_pred cHHHHHHHHHHHHHhhhh---hhhccccccCCcCCCCcccchHHHhhhHhh
Q 030244 126 LWIPLVTTFLTFGLSAVG---IAYGSLSSSWDAEKQGSLLGFEEAKQNWVE 173 (180)
Q Consensus 126 ~wv~~l~S~~~FglglLG---iSYGiLSASWD~~r~GSlLG~eE~~~N~~r 173 (180)
.+..+++..++.|+|.-+ .....++..+++++.|...|+-..-.+++.
T Consensus 99 ~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~ 149 (405)
T TIGR00891 99 GYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGA 149 (405)
T ss_pred cHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHH
Confidence 344455555555554222 233345556677777888888776555543
No 56
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=30.50 E-value=1.1e+02 Score=26.77 Aligned_cols=7 Identities=14% Similarity=-0.287 Sum_probs=3.3
Q ss_pred CccHHHH
Q 030244 124 LPLWIPL 130 (180)
Q Consensus 124 vP~wv~~ 130 (180)
++-|..+
T Consensus 265 ~~g~~~~ 271 (325)
T PRK10714 265 AEGVFML 271 (325)
T ss_pred CCCcHHH
Confidence 4445443
No 57
>PRK14230 camphor resistance protein CrcB; Provisional
Probab=29.55 E-value=1.2e+02 Score=23.66 Aligned_cols=18 Identities=11% Similarity=0.051 Sum_probs=13.1
Q ss_pred ccHHHHHHHH-HHHHHhhh
Q 030244 125 PLWIPLVTTF-LTFGLSAV 142 (180)
Q Consensus 125 P~wv~~l~S~-~~FglglL 142 (180)
|+|.+++++. +||.+|++
T Consensus 32 ~p~gTl~VNi~GsfllG~~ 50 (119)
T PRK14230 32 PATGNLFANWTGALLIGIF 50 (119)
T ss_pred CchHHHHHHHHHHHHHHHH
Confidence 5688888874 68877766
No 58
>PF09679 TraQ: Type-F conjugative transfer system pilin chaperone (TraQ); InterPro: IPR014112 This entry represents TraQ, a protein that makes a specific interaction with pilin (TraA) to aid its transfer through the inner membrane during the process of F-type conjugative pilus assembly [, ].
Probab=29.25 E-value=91 Score=24.28 Aligned_cols=27 Identities=22% Similarity=0.390 Sum_probs=21.4
Q ss_pred CccHHHHHHHHHHHHHhhhhhhhccccc
Q 030244 124 LPLWIPLVTTFLTFGLSAVGIAYGSLSS 151 (180)
Q Consensus 124 vP~wv~~l~S~~~FglglLGiSYGiLSA 151 (180)
-|--++++..++-+++-+.| .|+||-+
T Consensus 35 ~P~mA~~LAeiia~~Lvl~G-gYrILda 61 (93)
T PF09679_consen 35 QPEMAFFLAEIIAVGLVLSG-GYRILDA 61 (93)
T ss_pred ChHHHHHHHHHHHHHHhhhh-hHHHHHH
Confidence 37777888888888887777 8999865
No 59
>COG5393 Predicted membrane protein [Function unknown]
Probab=29.14 E-value=1.5e+02 Score=24.32 Aligned_cols=51 Identities=18% Similarity=0.099 Sum_probs=28.9
Q ss_pred HHHHhhhhhHHHHHHHHHHHHhhhhcccccCccH-HHHHHHHHHHHHhhhhh
Q 030244 94 RILVSVGVPLATGIASLHFFGVVKEKQLFDLPLW-IPLVTTFLTFGLSAVGI 144 (180)
Q Consensus 94 Rm~~f~GiP~~lG~~~f~~~Y~L~~~~~~dvP~w-v~~l~S~~~FglglLGi 144 (180)
|.+++.|+.+.+...-+...-.|+.-..+|-=-| +..++.+++..+|++|-
T Consensus 49 ~lllm~gLtl~fa~~~lmsL~vLvi~~f~~tyRl~a~~a~~~vl~vl~~i~c 100 (131)
T COG5393 49 QLLLMAGLTLLFAAFGLMSLMVLVIWAFDPTYRLNAMIATTAVLLVLALIGC 100 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556554332222222234444445555556 77788888888888874
No 60
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=28.63 E-value=1.3e+02 Score=29.63 Aligned_cols=30 Identities=20% Similarity=0.143 Sum_probs=21.5
Q ss_pred hhccccccCCcCCCCcccchHHHhhhHhhh
Q 030244 145 AYGSLSSSWDAEKQGSLLGFEEAKQNWVEI 174 (180)
Q Consensus 145 SYGiLSASWD~~r~GSlLG~eE~~~N~~rm 174 (180)
.+.+++--+.+++.|...|+-..-.+++-+
T Consensus 124 ~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~ 153 (1146)
T PRK08633 124 KYGIIPELVGKENLSRANGLLEAFTIVAIL 153 (1146)
T ss_pred HHhhhHHhcCcccchhhhhHHHHHHHHHHH
Confidence 344566666778889999998887776543
No 61
>PF09972 DUF2207: Predicted membrane protein (DUF2207); InterPro: IPR018702 This domain has no known function.
Probab=28.14 E-value=1.5e+02 Score=26.17 Aligned_cols=27 Identities=19% Similarity=0.390 Sum_probs=14.6
Q ss_pred hhccccccCCcCCCCc-----ccchHHHhhhHhhh
Q 030244 145 AYGSLSSSWDAEKQGS-----LLGFEEAKQNWVEI 174 (180)
Q Consensus 145 SYGiLSASWD~~r~GS-----lLG~eE~~~N~~rm 174 (180)
.+.+++. |.++ |. +.|+..+-.+..+|
T Consensus 448 ~~~~~~~-~T~~--G~~~~~~~~gfr~~L~d~~~~ 479 (511)
T PF09972_consen 448 FYKVMPR-RTPE--GAELYAQWKGFRRYLADFSRL 479 (511)
T ss_pred Hhhhccc-cchh--HHHHHHHHHHHHHHHhhhhhh
Confidence 4555555 7643 54 45666665555544
No 62
>PF11127 DUF2892: Protein of unknown function (DUF2892); InterPro: IPR021309 This family is conserved in bacteria. The function is not known.
Probab=28.10 E-value=1.4e+02 Score=20.25 Aligned_cols=20 Identities=10% Similarity=0.155 Sum_probs=16.3
Q ss_pred cHHHHHHHHHHHHHhhhhhh
Q 030244 126 LWIPLVTTFLTFGLSAVGIA 145 (180)
Q Consensus 126 ~wv~~l~S~~~FglglLGiS 145 (180)
.|+..++.+.++..|+.|..
T Consensus 33 ~~~~~~~g~~ll~~g~~g~C 52 (66)
T PF11127_consen 33 GWLLGFVGAMLLVTGITGFC 52 (66)
T ss_pred HHHHHHHHHHHHHHHHHCcC
Confidence 78888888888888888853
No 63
>PF15012 DUF4519: Domain of unknown function (DUF4519)
Probab=27.69 E-value=32 Score=24.54 Aligned_cols=28 Identities=11% Similarity=0.104 Sum_probs=18.5
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHH-hhhhc
Q 030244 92 IVRILVSVGVPLATGIASLHFFG-VVKEK 119 (180)
Q Consensus 92 ~rRm~~f~GiP~~lG~~~f~~~Y-~L~~~ 119 (180)
++-=+..+.+|+..++.+|.+.| |++.+
T Consensus 26 ~~~kv~tVVlP~l~~~~~~Ivv~vy~kTR 54 (56)
T PF15012_consen 26 AQQKVFTVVLPTLAAVFLFIVVFVYLKTR 54 (56)
T ss_pred HHHhheeEehhHHHHHHHHHhheeEEecc
Confidence 33445678899999998886443 44443
No 64
>COG4317 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.67 E-value=96 Score=24.09 Aligned_cols=26 Identities=23% Similarity=0.324 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHhhhhcccccCccHHHH
Q 030244 103 LATGIASLHFFGVVKEKQLFDLPLWIPL 130 (180)
Q Consensus 103 ~~lG~~~f~~~Y~L~~~~~~dvP~wv~~ 130 (180)
++.|+++-++|-+|+.+ ...|+.+.+
T Consensus 8 lgAGllVGiiyaLl~vr--sPAPP~iAl 33 (93)
T COG4317 8 LGAGLLVGIIYALLKVR--SPAPPAIAL 33 (93)
T ss_pred HhhhHHHHHHHHHHhCC--CCCCcHHHH
Confidence 34556665666666666 466777663
No 65
>PTZ00128 cytochrome c oxidase assembly protein-like; Provisional
Probab=27.62 E-value=1.8e+02 Score=25.81 Aligned_cols=35 Identities=6% Similarity=-0.073 Sum_probs=21.6
Q ss_pred CccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 030244 82 HLPQVVLERIIVRILVSVGVPLATGIASLHFFGVV 116 (180)
Q Consensus 82 ~IPevVs~RM~rRm~~f~GiP~~lG~~~f~~~Y~L 116 (180)
.....=..||+.+.++.+..=+++|.++-++|.+.
T Consensus 47 ~~~~~~~~~~~~~l~~~~v~Mfgf~fA~VPLY~~f 81 (232)
T PTZ00128 47 KKFKKERGQFFYYNLSLYIAMFGCSFAFVPLYRLF 81 (232)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 34444446777777776666666666666666554
No 66
>PF12279 DUF3619: Protein of unknown function (DUF3619); InterPro: IPR022064 This protein is found in bacteria. Proteins in this family are about 140 amino acids in length. This protein has two conserved sequence motifs: AAR and DDLP.
Probab=27.38 E-value=1.6e+02 Score=23.67 Aligned_cols=26 Identities=27% Similarity=0.426 Sum_probs=18.5
Q ss_pred CCCCCCccHHHHHHH--HHHHHHhhhhh
Q 030244 77 NSDEDHLPQVVLERI--IVRILVSVGVP 102 (180)
Q Consensus 77 ~~~~~~IPevVs~RM--~rRm~~f~GiP 102 (180)
++..+.||+.+++|. .||+++.--=|
T Consensus 15 d~~a~~Lp~~i~~RL~aAR~~ALa~~k~ 42 (131)
T PF12279_consen 15 DESADDLPPDISERLAAARRQALARKKP 42 (131)
T ss_pred hcccccCCHHHHHHHHHHHHHHHHhccc
Confidence 455668999999986 57777654333
No 67
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=27.30 E-value=1.6e+02 Score=24.03 Aligned_cols=14 Identities=21% Similarity=0.135 Sum_probs=7.2
Q ss_pred hhhhhHHHHHHHHH
Q 030244 98 SVGVPLATGIASLH 111 (180)
Q Consensus 98 f~GiP~~lG~~~f~ 111 (180)
++|+++++.++++.
T Consensus 12 ~~~~~~~~~~~~~~ 25 (199)
T PF10112_consen 12 ILGVLIAAITFLVS 25 (199)
T ss_pred HHHHHHHHHHHHHH
Confidence 45555555544443
No 68
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=26.68 E-value=2.4e+02 Score=24.35 Aligned_cols=47 Identities=19% Similarity=0.276 Sum_probs=32.5
Q ss_pred ccCccHHHHHHHHHHHHHhhhhhhhccccccCCcCCCCcccchHHHhhhHhhh
Q 030244 122 FDLPLWIPLVTTFLTFGLSAVGIAYGSLSSSWDAEKQGSLLGFEEAKQNWVEI 174 (180)
Q Consensus 122 ~dvP~wv~~l~S~~~FglglLGiSYGiLSASWD~~r~GSlLG~eE~~~N~~rm 174 (180)
++.|.|+.+++. +++|+.++-|.=.++|+-|-... .+.++..-++|+
T Consensus 41 ~~~~~~~ai~~g-lvwgl~I~~lDR~ivss~~~~~~-----~~~~~~~~~~R~ 87 (301)
T PF14362_consen 41 FGGPVWAAIPFG-LVWGLVIFNLDRFIVSSIRKSDG-----SRKRLLQALPRL 87 (301)
T ss_pred hccchHHHHHHH-HHHHHHHHHHHHHHHhccccccc-----hHHHHHHHHHHH
Confidence 455556666665 88999999999999998887542 455555555553
No 69
>COG0472 Rfe UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N- acetylglucosamine-1-phosphate transferase [Cell envelope biogenesis, outer membrane]
Probab=26.63 E-value=74 Score=28.57 Aligned_cols=12 Identities=42% Similarity=0.645 Sum_probs=8.7
Q ss_pred hhhHHHHHHHHH
Q 030244 100 GVPLATGIASLH 111 (180)
Q Consensus 100 GiP~~lG~~~f~ 111 (180)
++|+..|+++|.
T Consensus 46 ~tP~mGGl~I~~ 57 (319)
T COG0472 46 GTPTMGGLAILL 57 (319)
T ss_pred CCCCcchHHHHH
Confidence 777888877663
No 70
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=26.62 E-value=1.4e+02 Score=24.94 Aligned_cols=26 Identities=15% Similarity=0.022 Sum_probs=16.9
Q ss_pred cccccCCcCCCCcccchHHHhhhHhh
Q 030244 148 SLSSSWDAEKQGSLLGFEEAKQNWVE 173 (180)
Q Consensus 148 iLSASWD~~r~GSlLG~eE~~~N~~r 173 (180)
.+...+++++.|...|+-..-.+++.
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~g~ 155 (408)
T PRK09874 130 LIATQVPRNKSGWALGTLSTGGVSGA 155 (408)
T ss_pred HHHHhcCHhhhhHHHHHHHHHHHHHH
Confidence 34445666777888888776665553
No 71
>TIGR00701 conserved hypothetical integral membrane protein. It appears this conserved hypothetical integral membrane protein is found only in gram negative bacteria. Completed genomes that include a member of this family include Rickettsia prowazekii, Synechocystis sp. PCC6803, and Helicobacter pylori. These proteins have 3 (Helicobacter pylori) to 5 (Synechocystis sp. PCC 6803) GES predicted transmembrane regions. Most members have 4 GES predicted transmembrane regions.
Probab=26.47 E-value=3.4e+02 Score=21.72 Aligned_cols=46 Identities=9% Similarity=0.073 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhcccccCccHHHHH
Q 030244 85 QVVLERIIVRILVSVGVPLATGIASLHFFGVVKEKQLFDLPLWIPLV 131 (180)
Q Consensus 85 evVs~RM~rRm~~f~GiP~~lG~~~f~~~Y~L~~~~~~dvP~wv~~l 131 (180)
.+..++|.||.--....|.+++...+-+.+.......+.- .|...=
T Consensus 40 ~~~~~~merrL~~~i~~Pamil~~~~Gl~L~~~~~~~~~~-~Wl~~K 85 (142)
T TIGR00701 40 DSTLQVMEKKLYRFIMNPAMISTFIFGIINAHIEPFVAKS-GWLHFK 85 (142)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHhhCC-CHHHHH
Confidence 3467999999988888888877766655544333322222 565543
No 72
>COG2733 Predicted membrane protein [Function unknown]
Probab=26.33 E-value=1.2e+02 Score=29.05 Aligned_cols=41 Identities=12% Similarity=0.126 Sum_probs=32.8
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhcccccCccHHHHHHHH
Q 030244 88 LERIIVRILVSVGVPLATGIASLHFFGVVKEKQLFDLPLWIPLVTTF 134 (180)
Q Consensus 88 s~RM~rRm~~f~GiP~~lG~~~f~~~Y~L~~~~~~dvP~wv~~l~S~ 134 (180)
..+|+|||=+..+.-+++-+++|++.|++..+ .|+.++.++
T Consensus 3 rl~~lrr~K~iA~~lL~i~~~~f~l~~~~~nn------~w~g~v~a~ 43 (415)
T COG2733 3 KLNELRRAKVIATGLLLIAAGVFILCRFFENN------AWVGFVGAI 43 (415)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHhccc------HHHHHHHHH
Confidence 35788999888888888888899999998877 688766544
No 73
>KOG4737 consensus ATPase membrane sector associated protein [Energy production and conversion]
Probab=26.19 E-value=61 Score=30.04 Aligned_cols=35 Identities=26% Similarity=0.334 Sum_probs=26.0
Q ss_pred ccCccH-HHHHHHHHHHHHhhhhhhhccccccCCcCCC
Q 030244 122 FDLPLW-IPLVTTFLTFGLSAVGIAYGSLSSSWDAEKQ 158 (180)
Q Consensus 122 ~dvP~w-v~~l~S~~~FglglLGiSYGiLSASWD~~r~ 158 (180)
.|.|.. ..++.-++.|+++|+=|.||| ||.||++.
T Consensus 277 sdYpviFni~Lw~mvil~lali~i~y~i--a~mDPg~D 312 (326)
T KOG4737|consen 277 SDYPVIFNIFLWLMVILVLALIYIVYGI--ASMDPGKD 312 (326)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHhhh--hccCCCcc
Confidence 344432 345666789999999999999 67898853
No 74
>TIGR00916 2A0604s01 protein-export membrane protein, SecD/SecF family. The SecA,SecB,SecD,SecE,SecF,SecG and SecY proteins form the protein translocation appartus in prokaryotes. This family is specific for the SecD and SecF proteins.
Probab=26.15 E-value=1e+02 Score=25.32 Aligned_cols=32 Identities=6% Similarity=-0.017 Sum_probs=18.0
Q ss_pred CCCCCcc---HHHHHHHHHHHHHhhhhhHHHHHHH
Q 030244 78 SDEDHLP---QVVLERIIVRILVSVGVPLATGIAS 109 (180)
Q Consensus 78 ~~~~~IP---evVs~RM~rRm~~f~GiP~~lG~~~ 109 (180)
.+++.|. ..+.+...+.+.....+-+.+=+.+
T Consensus 29 ~s~~~v~~~~~~~~~~~~~~~~~~l~~a~~lv~l~ 63 (192)
T TIGR00916 29 ISAPVVGTVGPTLGGELIKAGIIALLIGLVLVLLY 63 (192)
T ss_pred EecCccCCCCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555 6667777777766555544443333
No 75
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=26.06 E-value=1.5e+02 Score=26.67 Aligned_cols=18 Identities=17% Similarity=0.381 Sum_probs=11.3
Q ss_pred ccccCCcCCCCcccchHH
Q 030244 149 LSSSWDAEKQGSLLGFEE 166 (180)
Q Consensus 149 LSASWD~~r~GSlLG~eE 166 (180)
++--+.+++.|...|+-.
T Consensus 148 i~~~~~~~~rg~a~g~~~ 165 (476)
T PLN00028 148 MSTMFNGKIVGTANGIAA 165 (476)
T ss_pred HHHhcChhheeHHHHHHH
Confidence 444455667788877754
No 76
>COG4967 PilV Tfp pilus assembly protein PilV [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=25.99 E-value=49 Score=27.67 Aligned_cols=15 Identities=20% Similarity=0.514 Sum_probs=12.2
Q ss_pred HHHHHHHHHhhhhhh
Q 030244 131 VTTFLTFGLSAVGIA 145 (180)
Q Consensus 131 l~S~~~FglglLGiS 145 (180)
+++++++++|+||+.
T Consensus 18 LIA~lll~vglLgla 32 (162)
T COG4967 18 LIAMLLLSVGLLGLA 32 (162)
T ss_pred HHHHHHHHHHHHHHH
Confidence 677888888888875
No 77
>PF06170 DUF983: Protein of unknown function (DUF983); InterPro: IPR009325 This family consists of several bacterial proteins of unknown function.
Probab=25.61 E-value=2e+02 Score=21.48 Aligned_cols=25 Identities=20% Similarity=0.246 Sum_probs=16.1
Q ss_pred hhhhcccccCccHHHHHHHHHHHHH
Q 030244 115 VVKEKQLFDLPLWIPLVTTFLTFGL 139 (180)
Q Consensus 115 ~L~~~~~~dvP~wv~~l~S~~~Fgl 139 (180)
.+.....++.|.|+-+++...+..+
T Consensus 43 ~l~~~~~~~pp~wv~~~i~~pl~~~ 67 (86)
T PF06170_consen 43 ALWVEMAFRPPLWVHLAIWLPLTLA 67 (86)
T ss_pred HHHHHhhcCCCHHHHHHHHHHHHHH
Confidence 3344555788999988775554443
No 78
>COG0577 SalY ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms]
Probab=25.58 E-value=2.6e+02 Score=22.70 Aligned_cols=63 Identities=10% Similarity=-0.007 Sum_probs=33.5
Q ss_pred CccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh-----------hhcccccCccHHHHHHHHHHHHHhhhhh
Q 030244 82 HLPQVVLERIIVRILVSVGVPLATGIASLHFFGVV-----------KEKQLFDLPLWIPLVTTFLTFGLSAVGI 144 (180)
Q Consensus 82 ~IPevVs~RM~rRm~~f~GiP~~lG~~~f~~~Y~L-----------~~~~~~dvP~wv~~l~S~~~FglglLGi 144 (180)
+-+.++...++...++.+.+...+|+.+..+..++ .......+++........+.+.+++++-
T Consensus 327 ~~~~~i~~~~~~e~~~~~~~g~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~ 400 (419)
T COG0577 327 ATRREILLQFLLEALILGLIGGLLGILLGLGLSLLLALLLIASLFFLLALPILLSPLLILLALIVALLVGVIAG 400 (419)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666555555555555544211111 1234556666666666666666666654
No 79
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=25.15 E-value=1.5e+02 Score=24.65 Aligned_cols=24 Identities=13% Similarity=-0.060 Sum_probs=16.7
Q ss_pred ccccCCcCCCCcccchHHHhhhHh
Q 030244 149 LSSSWDAEKQGSLLGFEEAKQNWV 172 (180)
Q Consensus 149 LSASWD~~r~GSlLG~eE~~~N~~ 172 (180)
+...|-+++.|...|+-.+-.|++
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~g 134 (355)
T TIGR00896 111 LIKRDFPQRVGLMTGLYSMALMGG 134 (355)
T ss_pred HHHHhCcchhhHHHHHHHHHHHHH
Confidence 445666677888888877666654
No 80
>PF06022 Cir_Bir_Yir: Plasmodium variant antigen protein Cir/Yir/Bir; InterPro: IPR006477 This group of sequences identifies a large paralogous family of variant antigens from several Plasmodium species (Plasmodium yoelii, Plasmodium berghei and Plasmodium chabaudi). It is not believed that there are any orthologs of this family in Plasmodium falciparum.
Probab=25.05 E-value=81 Score=28.09 Aligned_cols=23 Identities=22% Similarity=0.416 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHH
Q 030244 86 VVLERIIVRILVSVGVPLATGIA 108 (180)
Q Consensus 86 vVs~RM~rRm~~f~GiP~~lG~~ 108 (180)
.+.++.+-=..+|++||.+||++
T Consensus 256 si~nkLi~vl~if~aI~iflGIa 278 (280)
T PF06022_consen 256 SIANKLIPVLSIFGAIPIFLGIA 278 (280)
T ss_pred chhhhHHHHHHHHHHHHHHhhee
Confidence 34578888889999999999986
No 81
>PRK02565 photosystem II reaction center protein J; Provisional
Probab=24.95 E-value=33 Score=22.97 Aligned_cols=23 Identities=22% Similarity=0.258 Sum_probs=16.5
Q ss_pred ccCccHHHHHHHHHHHHHhhhhhh
Q 030244 122 FDLPLWIPLVTTFLTFGLSAVGIA 145 (180)
Q Consensus 122 ~dvP~wv~~l~S~~~FglglLGiS 145 (180)
-.+|.|++..+ .++-.++++||-
T Consensus 5 GriPLWlV~tv-~G~~vi~~vgiF 27 (39)
T PRK02565 5 GRIPLWLVATV-AGMGVIFVVGLF 27 (39)
T ss_pred Cccceeehhhh-hHHHHHhheeeE
Confidence 36899997544 556678888874
No 82
>PF00335 Tetraspannin: Tetraspanin family RDS_ROM1 subfamily; InterPro: IPR018499 A number of eukaryotic CD antigens have been shown to be related []. CD9 (also called DRAP-27, MRP-1 or p24) upregulates HB-EGF activity as a receptor for diphtheria toxin as well as its juxtacrine activity. CD9 mAbs modulate cell adhesion and migration and trigger platelet activation that is blocked by mAbs directed to the platelet Fc receptor CD32. In mice, CD9 mAb KMC8.8 has been shown to inhibit the production of myeloid cells in vitro and has a costimulatory activity for T cells. CD9 is a type III membrane protein, with four putative transmembrane domains. CD37 (or gp52-40) is involved in signal transduction and serves as a stable marker for malignancies derived from mature B cells, like B-CLL, HCL, and all types of B-NHL. CD63 transfection reduced melanoma cell motility on fibronectin, collagen and laminin, and reduced the growth and metastasis of melanoma cells in nude mice []. CD63 has been used as a marker for late endosomes and for primary melanomas. These proteins are all type II membrane proteins: they contain an N-terminal transmembrane (TM) domain, which acts both as a signal sequence and a membrane anchor, and 3 additional TM regions (hence the name 'TM4'). The sequences contain a number of conserved cysteine residues. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0016021 integral to membrane; PDB: 1IV5_A 1G8Q_A.
Probab=24.70 E-value=25 Score=26.56 Aligned_cols=19 Identities=16% Similarity=0.244 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHHHhhhhh
Q 030244 126 LWIPLVTTFLTFGLSAVGI 144 (180)
Q Consensus 126 ~wv~~l~S~~~FglglLGi 144 (180)
.++.+.+..+.+.++++|+
T Consensus 46 ~~~~i~~G~~~~~~~~~G~ 64 (221)
T PF00335_consen 46 IIILIFIGIFILIISFLGC 64 (221)
T ss_dssp -------------------
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344434444455556655
No 83
>PRK10692 hypothetical protein; Provisional
Probab=24.66 E-value=1.8e+02 Score=22.64 Aligned_cols=50 Identities=12% Similarity=0.200 Sum_probs=32.8
Q ss_pred HHHHhhh-hhHHHHHHHHH---HHHhhhhcccccCccHHHHHHHHHHHHHhhhh
Q 030244 94 RILVSVG-VPLATGIASLH---FFGVVKEKQLFDLPLWIPLVTTFLTFGLSAVG 143 (180)
Q Consensus 94 Rm~~f~G-iP~~lG~~~f~---~~Y~L~~~~~~dvP~wv~~l~S~~~FglglLG 143 (180)
+-+...| +-+++||.+.+ .|-++..-..+++|-..+-..-+..|.-+++=
T Consensus 4 k~a~~~GN~lMglGmv~Mv~gigysi~~~i~~L~Lp~~~~~gal~~IFiGAllW 57 (92)
T PRK10692 4 KNASLLGNVLMGLGLVVMVVGVGYSILNQLPQLNLPQFFAHGALLSIFVGALLW 57 (92)
T ss_pred hhhHHHhhHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHhhHHHHHHHHHHHH
Confidence 3344443 45677777664 34445566678999998888777777666653
No 84
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=24.59 E-value=1.6e+02 Score=25.83 Aligned_cols=27 Identities=19% Similarity=0.140 Sum_probs=16.9
Q ss_pred cccCccHHHHHHHHHHHHHhhhhhhhc
Q 030244 121 LFDLPLWIPLVTTFLTFGLSAVGIAYG 147 (180)
Q Consensus 121 ~~dvP~wv~~l~S~~~FglglLGiSYG 147 (180)
+.-+=..+.+++.+.+|.+|++|--.|
T Consensus 268 ~~~~~~~~l~~~g~~l~~lG~igeyi~ 294 (325)
T PRK10714 268 VFMLFAVLFTFIGAQFIGMGLLGEYIG 294 (325)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333555667778888888884443
No 85
>COG4956 Integral membrane protein (PIN domain superfamily) [General function prediction only]
Probab=24.54 E-value=2.2e+02 Score=26.83 Aligned_cols=60 Identities=18% Similarity=0.233 Sum_probs=32.1
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHhhhhc--ccccCccHHHHHHHHHHHHHhhhhhhhcc
Q 030244 89 ERIIVRILVSVGVPLATGIASLHFFGVVKEK--QLFDLPLWIPLVTTFLTFGLSAVGIAYGS 148 (180)
Q Consensus 89 ~RM~rRm~~f~GiP~~lG~~~f~~~Y~L~~~--~~~dvP~wv~~l~S~~~FglglLGiSYGi 148 (180)
+++++|+.+..-+--.+|+.+-.+.-+|... .-..+|-.-.++.-++.+-++.+|++||+
T Consensus 70 e~~i~k~~~~~ilf~tiGLiiGLlia~l~~~pL~~~~ip~~~~ii~vi~t~il~y~G~~~~~ 131 (356)
T COG4956 70 EEQIRKLPVTTILFGTIGLIIGLLIAVLLSSPLFLLPIPFISTIIPVILTIILAYFGFQLAD 131 (356)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhHHhhCCccHHHhHHHHHHHHHHHHHhhHHhh
Confidence 4556665544433333333322222222222 33456655556666677888999999985
No 86
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=24.50 E-value=5e+02 Score=23.00 Aligned_cols=77 Identities=8% Similarity=0.061 Sum_probs=45.0
Q ss_pred CCCCccHHHHHHHHHHHHHhhhhhHHHHHHHHH--------HHHhhhhcccccC-ccHHHHHHHHHHHHHhhhhhhhccc
Q 030244 79 DEDHLPQVVLERIIVRILVSVGVPLATGIASLH--------FFGVVKEKQLFDL-PLWIPLVTTFLTFGLSAVGIAYGSL 149 (180)
Q Consensus 79 ~~~~IPevVs~RM~rRm~~f~GiP~~lG~~~f~--------~~Y~L~~~~~~dv-P~wv~~l~S~~~FglglLGiSYGiL 149 (180)
...+.||++.+|+-+|...-.=+.++++..+.. +.-.+.. .+.+ +..+.++.+..+++.++..+--|.|
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~--~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l 87 (467)
T PRK09556 10 PTLDLPLEVQRKMWFKPFMQSYLVVFIGYLTMYLIRKNFKAAQNDMIS--TYGLSTTELGMIGLGFSITYGVGKTLVGYY 87 (467)
T ss_pred CccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHH--hcCCCHHHHHHHHHHHHHHHHHHHhhhhhH
Confidence 445668888888888865544444444433211 0111122 2333 3455667777777777777888888
Q ss_pred cccCCcCC
Q 030244 150 SSSWDAEK 157 (180)
Q Consensus 150 SASWD~~r 157 (180)
+-.+.+.+
T Consensus 88 ~Dr~g~r~ 95 (467)
T PRK09556 88 ADGKNTKQ 95 (467)
T ss_pred hhccCccc
Confidence 87777543
No 87
>TIGR00901 2A0125 AmpG-related permease.
Probab=24.45 E-value=2.5e+02 Score=23.33 Aligned_cols=30 Identities=7% Similarity=-0.075 Sum_probs=20.5
Q ss_pred hhhhhhccccccCCcCCCCcccchHHHhhh
Q 030244 141 AVGIAYGSLSSSWDAEKQGSLLGFEEAKQN 170 (180)
Q Consensus 141 lLGiSYGiLSASWD~~r~GSlLG~eE~~~N 170 (180)
..+..+..++-.=|++.+|+..|+-..-.|
T Consensus 326 ~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 326 GTVAFVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred HHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 334445556666688899999998766554
No 88
>PF12966 AtpR: N-ATPase, AtpR subunit
Probab=24.30 E-value=1.7e+02 Score=21.68 Aligned_cols=74 Identities=16% Similarity=-0.001 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHhhhhcccccCccHHHHHHHHHHHHHhhhhhhhccccccCCcCCCCcccchHHHhhhHhhhccc
Q 030244 103 LATGIASLHFFGVVKEKQLFDLPLWIPLVTTFLTFGLSAVGIAYGSLSSSWDAEKQGSLLGFEEAKQNWVEIWNE 177 (180)
Q Consensus 103 ~~lG~~~f~~~Y~L~~~~~~dvP~wv~~l~S~~~FglglLGiSYGiLSASWD~~r~GSlLG~eE~~~N~~rmw~~ 177 (180)
+++|...|..-++-+.+..-.-.+...++.|+++--.-+++.=|.+....|.+- =..++|+--++.=+-|.+++
T Consensus 11 ~~lG~~yF~gLw~tvr~~~~~~~p~~~~~~S~l~R~~l~~~~f~~~~~~~~~~l-L~~l~GF~~aR~i~~r~~r~ 84 (85)
T PF12966_consen 11 LLLGALYFGGLWWTVRRLLASKRPALWFLLSFLLRLALVLAGFYLLAQGGWWRL-LACLLGFLLARFIVLRRTRP 84 (85)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHhCCHHHH-HHHHHHHHHHHHHHHHHhcC
Confidence 455666666655655555555557888888866666667777788866666654 46677777666655555544
No 89
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=24.04 E-value=2.8e+02 Score=23.08 Aligned_cols=45 Identities=13% Similarity=0.040 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHhhhh---hhhccccccCCcCCCCcccchHHHhhhHhh
Q 030244 129 PLVTTFLTFGLSAVG---IAYGSLSSSWDAEKQGSLLGFEEAKQNWVE 173 (180)
Q Consensus 129 ~~l~S~~~FglglLG---iSYGiLSASWD~~r~GSlLG~eE~~~N~~r 173 (180)
.+++..++.|+|.-+ +.+..++.-+++++.|...|+-.+--+++-
T Consensus 129 ~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~ 176 (481)
T TIGR00879 129 MLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGI 176 (481)
T ss_pred HHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHH
Confidence 344445555554322 234445555666777888888766555543
No 90
>TIGR01666 YCCS hypothetical membrane protein, TIGR01666. This model represents a clade of sequences from gamma and beta proteobacteria. These proteins are 700 amino acids long and many have been annotated as putative membrane proteins. The gene from Salmonella has been annotated as a putative efflux transporter. The gene from E. coli has the name yccS.
Probab=23.80 E-value=1.2e+02 Score=30.33 Aligned_cols=23 Identities=35% Similarity=0.554 Sum_probs=12.0
Q ss_pred cccCccHHHHHHHHHHHHHhhhh
Q 030244 121 LFDLPLWIPLVTTFLTFGLSAVG 143 (180)
Q Consensus 121 ~~dvP~wv~~l~S~~~FglglLG 143 (180)
.++-|-|.++...+.+|+.+++|
T Consensus 77 l~~~p~lf~~~l~~~tf~~~mlg 99 (704)
T TIGR01666 77 LFGKPWLFAVGLTVSTFGFIMLG 99 (704)
T ss_pred HhcCcHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555444
No 91
>PRK03633 putative MFS family transporter protein; Provisional
Probab=23.80 E-value=2.1e+02 Score=24.33 Aligned_cols=48 Identities=15% Similarity=0.014 Sum_probs=27.7
Q ss_pred cHHHHHHHHHHHHHhhhhhh---hccccccCCcCCCCcccchHHHhhhHhh
Q 030244 126 LWIPLVTTFLTFGLSAVGIA---YGSLSSSWDAEKQGSLLGFEEAKQNWVE 173 (180)
Q Consensus 126 ~wv~~l~S~~~FglglLGiS---YGiLSASWD~~r~GSlLG~eE~~~N~~r 173 (180)
++..++...++.|+|.-++. ..++...+.+++.|..+|+-..--|++-
T Consensus 93 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 143 (381)
T PRK03633 93 GFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGT 143 (381)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 34455555566665543321 2344566777778888887666655543
No 92
>PRK15120 lipopolysaccharide ABC transporter permease LptF; Provisional
Probab=23.67 E-value=1.6e+02 Score=25.96 Aligned_cols=39 Identities=13% Similarity=0.048 Sum_probs=22.5
Q ss_pred HHHHHHHHHHhhh-----hcccccCccHHH-HHHHHHHHHHhhhh
Q 030244 105 TGIASLHFFGVVK-----EKQLFDLPLWIP-LVTTFLTFGLSAVG 143 (180)
Q Consensus 105 lG~~~f~~~Y~L~-----~~~~~dvP~wv~-~l~S~~~FglglLG 143 (180)
+|++++.+||.+. -.....+|+|+. .+..++++++|+.-
T Consensus 301 ~~i~~~~~y~~l~~~~~~l~~~g~lpp~la~Wlp~i~~~~~~~~l 345 (366)
T PRK15120 301 PAMLLYLIFFLLQTSLRSNGGKGKLDPMIWMWAVNLIYLALAIVL 345 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCChHHHHHHHHHHHHHHHHHH
Confidence 4455555666552 234457888864 44666666666444
No 93
>TIGR00898 2A0119 cation transport protein.
Probab=23.59 E-value=1.7e+02 Score=25.86 Aligned_cols=76 Identities=8% Similarity=0.041 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhcccccCccHHHHHHHHHHHHHhhhh---hhhccccccCCcCCCCccc
Q 030244 86 VVLERIIVRILVSVGVPLATGIASLHFFGVVKEKQLFDLPLWIPLVTTFLTFGLSAVG---IAYGSLSSSWDAEKQGSLL 162 (180)
Q Consensus 86 vVs~RM~rRm~~f~GiP~~lG~~~f~~~Y~L~~~~~~dvP~wv~~l~S~~~FglglLG---iSYGiLSASWD~~r~GSlL 162 (180)
.++||.-||..+..+.-... ++.+.. .+ .|....+++..++.|++.-+ +.+.+++--.++++.|...
T Consensus 149 ~l~Dr~Grr~~~~~~~~~~~-i~~~~~-~~--------~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~ 218 (505)
T TIGR00898 149 YLSDRFGRKKVLLLSTLVTA-VSGVLT-AF--------SPNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVG 218 (505)
T ss_pred HhhhhccchHHHHHHHHHHH-HHHHHH-HH--------cccHHHHHHHHHHHHhhccchHHHHHHHhheecChhhhHHHH
Confidence 34678777766655543222 111111 11 13344444444444444332 3444455545555567666
Q ss_pred chHHHhhhH
Q 030244 163 GFEEAKQNW 171 (180)
Q Consensus 163 G~eE~~~N~ 171 (180)
|+-.+--+.
T Consensus 219 ~~~~~~~~~ 227 (505)
T TIGR00898 219 TLIQVFFSL 227 (505)
T ss_pred HHHHHHHHH
Confidence 665444333
No 94
>COG4252 Predicted transmembrane sensor domain [Signal transduction mechanisms]
Probab=23.52 E-value=1e+02 Score=29.14 Aligned_cols=79 Identities=16% Similarity=0.114 Sum_probs=37.6
Q ss_pred CCccHHHHHHHHHHHHHhhhhhHHHHHH-HHHHHHhhhhccc-ccCccHHHHHHHHHHHHHhhhhhhhcccccc-CCcCC
Q 030244 81 DHLPQVVLERIIVRILVSVGVPLATGIA-SLHFFGVVKEKQL-FDLPLWIPLVTTFLTFGLSAVGIAYGSLSSS-WDAEK 157 (180)
Q Consensus 81 ~~IPevVs~RM~rRm~~f~GiP~~lG~~-~f~~~Y~L~~~~~-~dvP~wv~~l~S~~~FglglLGiSYGiLSAS-WD~~r 157 (180)
.-+.|.++-.|-+|.++-+-- ...... .|........-.+ ..-|.-+.+++.++..| +++++|+.+..- |.|-
T Consensus 301 ~~vsQilsa~ldgR~ll~~w~-~~~e~l~i~~w~~~g~~~aw~~r~~~~~~l~~~~~~~~--l~~~s~~l~l~gwwiP~- 376 (400)
T COG4252 301 NIVSQILSALLDGRPLLPVWP-DGAELLWIFAWSLLGGLLAWRLRSPLRLLLAVGLALAG--LLLISYLLFLAGWWIPL- 376 (400)
T ss_pred HHHHHHHHHHhcCCccccccH-HHHHHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHH--HHHHHHHHHHHhccccc-
Confidence 346677777888887554433 222222 1111111111111 11122255555555553 888899877654 5554
Q ss_pred CCcccc
Q 030244 158 QGSLLG 163 (180)
Q Consensus 158 ~GSlLG 163 (180)
-..+++
T Consensus 377 ip~ll~ 382 (400)
T COG4252 377 IPPLLA 382 (400)
T ss_pred hHHHHH
Confidence 344443
No 95
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=23.46 E-value=41 Score=23.22 Aligned_cols=21 Identities=5% Similarity=0.135 Sum_probs=14.1
Q ss_pred HHHHHHHHHHhhhhhhhcccc
Q 030244 130 LVTTFLTFGLSAVGIAYGSLS 150 (180)
Q Consensus 130 ~l~S~~~FglglLGiSYGiLS 150 (180)
++.-.++|.+|+||++-=-+|
T Consensus 4 ~~iV~i~iv~~lLg~~I~~~~ 24 (50)
T PF12606_consen 4 FLIVSIFIVMGLLGLSICTTL 24 (50)
T ss_pred hHHHHHHHHHHHHHHHHHHHh
Confidence 444467888899998754433
No 96
>PF10277 Frag1: Frag1/DRAM/Sfk1 family; InterPro: IPR019402 This entry includes Frag1, DRAM and Sfk1 proteins. Frag1 (FGF receptor activating protein 1) is a protein that is conserved from fungi to humans. There are four potential iso-prenylation sites throughout the peptide, CILW (x2), CIIW and CIGL. Frag1 is a membrane-spanning protein that is ubiquitously expressed in adult tissues suggesting an important cellular function []. DRAM is a family of proteins conserved from nematodes to humans with six hydrophobic transmembrane regions and an endoplasmic reticulum signal peptide. It is a lysosomal protein that induces macro-autophagy as an effector of p53-mediated death, where p53 is the tumour-suppressor gene that is frequently mutated in cancer. Expression of DRAM is stress-induced []. This region is also part of a family of small plasma membrane proteins, referred to as Sfk1, that may act together with or upstream of Stt4p to generate normal levels of the essential phospholipid PI4P, thus allowing proper localisation of Stt4p to the actin cytoskeleton [, ].
Probab=23.35 E-value=2.9e+02 Score=21.61 Aligned_cols=55 Identities=16% Similarity=0.126 Sum_probs=26.5
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHhhhhccccc--CccHHHHHHHHHHHHHhhhh
Q 030244 89 ERIIVRILVSVGVPLATGIASLHFFGVVKEKQLFD--LPLWIPLVTTFLTFGLSAVG 143 (180)
Q Consensus 89 ~RM~rRm~~f~GiP~~lG~~~f~~~Y~L~~~~~~d--vP~wv~~l~S~~~FglglLG 143 (180)
+|-+.|+++..+.+..+.+..+-.-|........+ +..+...++.+..+|+.+++
T Consensus 53 e~~if~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~gl~~~a 109 (215)
T PF10277_consen 53 ESYIFRFGLNISAFFRLLIVYLRYRYVRQLASKCSRWLNILSLVFGLLSAIGLILLA 109 (215)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHHHHHHhh
Confidence 46677777777776665555543333222111111 44444444444445444443
No 97
>PRK09855 PTS system N-acetylgalactosamine-specific transporter subunit IID; Provisional
Probab=23.22 E-value=1.4e+02 Score=26.61 Aligned_cols=47 Identities=23% Similarity=0.339 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHH-HHHHHHhhhhcccccCccHHHHHHHHHHHHHhhhh
Q 030244 86 VVLERIIVRILVSVGVPLATGIA-SLHFFGVVKEKQLFDLPLWIPLVTTFLTFGLSAVG 143 (180)
Q Consensus 86 vVs~RM~rRm~~f~GiP~~lG~~-~f~~~Y~L~~~~~~dvP~wv~~l~S~~~FglglLG 143 (180)
++.|-++ |-.+.++ +|..||+++.+. +. |.++.++.-.+.+.++++|
T Consensus 214 ~ilD~I~---------P~lLPl~~~~~~y~llkkK~-~~-~~~li~~~~vi~iv~~~lG 261 (263)
T PRK09855 214 DFFDKVF---------PNILPMAYTLLMYYFLRVKK-AH-PVLLIGVTFVLSIVCSAFG 261 (263)
T ss_pred HHHHHHh---------hchHHHHHHHHHHHHHHhcC-Cc-HHHHHHHHHHHHHHHHHhc
Confidence 5666554 3334433 334445554242 21 4555544434444444444
No 98
>PRK12307 putative sialic acid transporter; Provisional
Probab=22.93 E-value=1.9e+02 Score=24.65 Aligned_cols=29 Identities=14% Similarity=0.028 Sum_probs=19.2
Q ss_pred hhhccccccCCcCCCCcccchHHHhhhHh
Q 030244 144 IAYGSLSSSWDAEKQGSLLGFEEAKQNWV 172 (180)
Q Consensus 144 iSYGiLSASWD~~r~GSlLG~eE~~~N~~ 172 (180)
....+++..|++++.|...|+-..-.+++
T Consensus 126 ~~~~~~~~~~~~~~r~~~~~~~~~~~~lg 154 (426)
T PRK12307 126 CASTYAVESWPKHLKSKASAFLVSGFGIG 154 (426)
T ss_pred HHHHHHHHhCCHhHhhHhhhHHHHHHhHH
Confidence 34455666677777788888766655544
No 99
>CHL00108 psbJ photosystem II protein J
Probab=22.83 E-value=19 Score=24.16 Aligned_cols=23 Identities=22% Similarity=0.264 Sum_probs=16.9
Q ss_pred ccCccHHHHHHHHHHHHHhhhhhh
Q 030244 122 FDLPLWIPLVTTFLTFGLSAVGIA 145 (180)
Q Consensus 122 ~dvP~wv~~l~S~~~FglglLGiS 145 (180)
-.+|.|++..+ .++..++++||-
T Consensus 6 GRiPLWlVgtv-~G~~vi~~vgiF 28 (40)
T CHL00108 6 GRIPLWLIGTV-AGIAVIGLLGIF 28 (40)
T ss_pred ccccEEeeeeh-hhHhHHheeeeE
Confidence 36899997544 567778899874
No 100
>PRK12382 putative transporter; Provisional
Probab=22.61 E-value=3.2e+02 Score=23.08 Aligned_cols=22 Identities=5% Similarity=0.095 Sum_probs=15.4
Q ss_pred ccCCcCCCCcccchHHHhhhHh
Q 030244 151 SSWDAEKQGSLLGFEEAKQNWV 172 (180)
Q Consensus 151 ASWD~~r~GSlLG~eE~~~N~~ 172 (180)
...++++.|...|+-..-.+.+
T Consensus 139 ~~~~~~~r~~a~~~~~~~~~~g 160 (392)
T PRK12382 139 GLVGPKHSGKVMSWNGMAMYGA 160 (392)
T ss_pred hhCCccccchhhhHHHHHHHHH
Confidence 3456788899998876655544
No 101
>PLN02505 omega-6 fatty acid desaturase
Probab=22.61 E-value=3.1e+02 Score=25.48 Aligned_cols=25 Identities=16% Similarity=0.290 Sum_probs=17.8
Q ss_pred CCCccHHHHHHHHHHHHHhhhhhHH
Q 030244 80 EDHLPQVVLERIIVRILVSVGVPLA 104 (180)
Q Consensus 80 ~~~IPevVs~RM~rRm~~f~GiP~~ 104 (180)
.++||++..+|=..|-+..+..=.+
T Consensus 37 r~aiP~~~f~~s~~rs~~~v~~d~~ 61 (381)
T PLN02505 37 KKAIPPHCFKRSVLRSFSYLVYDLL 61 (381)
T ss_pred HHhCCHHhcCCCHHHHHHHHHHHHH
Confidence 4689999988887777665544433
No 102
>PRK15071 lipopolysaccharide ABC transporter permease; Provisional
Probab=22.47 E-value=1.6e+02 Score=25.65 Aligned_cols=22 Identities=23% Similarity=0.513 Sum_probs=11.8
Q ss_pred cccccCccHHHHH-HHHHHHHHh
Q 030244 119 KQLFDLPLWIPLV-TTFLTFGLS 140 (180)
Q Consensus 119 ~~~~dvP~wv~~l-~S~~~Fglg 140 (180)
.....+||++... -.++|+++|
T Consensus 326 g~~g~l~P~laaw~P~iif~~~~ 348 (356)
T PRK15071 326 SLVYGIPPIIGALLPSLLFLGIS 348 (356)
T ss_pred HHhcCccHHHHHHHHHHHHHHHH
Confidence 3445678876444 444444444
No 103
>PF07235 DUF1427: Protein of unknown function (DUF1427); InterPro: IPR009872 This family consists of several bacterial proteins of around 100 residues in length. The function of this family is unknown.
Probab=22.04 E-value=1.2e+02 Score=23.58 Aligned_cols=26 Identities=19% Similarity=0.289 Sum_probs=18.9
Q ss_pred hHHHHHHHHHHHHhhhhcccccCccHHH
Q 030244 102 PLATGIASLHFFGVVKEKQLFDLPLWIP 129 (180)
Q Consensus 102 P~~lG~~~f~~~Y~L~~~~~~dvP~wv~ 129 (180)
-++.|+++-++|++++.+- ..|+.+.
T Consensus 6 SL~aG~lvG~iy~ll~v~s--PAPP~iA 31 (90)
T PF07235_consen 6 SLGAGLLVGVIYSLLKVPS--PAPPVIA 31 (90)
T ss_pred ehhhhhHHHHHHHHhcCCC--CCCcHhH
Confidence 3567888888888888774 5667665
No 104
>PF02656 DUF202: Domain of unknown function (DUF202); InterPro: IPR003807 This entry describes proteins of unknown function.
Probab=21.97 E-value=2.2e+02 Score=19.41 Aligned_cols=24 Identities=21% Similarity=0.272 Sum_probs=17.9
Q ss_pred cHHHHHHHHHHHHHhhhhhhhccc
Q 030244 126 LWIPLVTTFLTFGLSAVGIAYGSL 149 (180)
Q Consensus 126 ~wv~~l~S~~~FglglLGiSYGiL 149 (180)
..+.....++++++|++-+-||..
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~ 65 (73)
T PF02656_consen 42 RRVSKVLGLLLIVLGLLTLIYGIY 65 (73)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466667777888888888877754
No 105
>PF07152 YaeQ: YaeQ protein; InterPro: IPR009822 This family consists of several hypothetical bacterial proteins of around 180 residues in length, which are often known as YaeQ. YaeQ is homologous to RfaH, a specialised transcription elongation protein. YaeQ is known to compensate for loss of RfaH function [].; PDB: 3C0U_B 2OT9_A 2G3W_B.
Probab=21.69 E-value=44 Score=28.18 Aligned_cols=16 Identities=38% Similarity=0.573 Sum_probs=12.6
Q ss_pred cHHHHHHHHHHHHHhh
Q 030244 84 PQVVLERIIVRILVSV 99 (180)
Q Consensus 84 PevVs~RM~rRm~~f~ 99 (180)
|-|-.+|||.|++.|+
T Consensus 33 PSEt~eRmm~RlLAf~ 48 (174)
T PF07152_consen 33 PSETDERMMVRLLAFA 48 (174)
T ss_dssp TTS-HHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHH
Confidence 5566799999999876
No 106
>PRK09877 2,3-diketo-L-gulonate TRAP transporter small permease protein YiaM; Provisional
Probab=21.60 E-value=2.6e+02 Score=21.98 Aligned_cols=41 Identities=10% Similarity=0.031 Sum_probs=29.0
Q ss_pred CccHHHHHHHHHHHHHhhhhhhhccccccCCcCCCCcccchHHHhhhHh
Q 030244 124 LPLWIPLVTTFLTFGLSAVGIAYGSLSSSWDAEKQGSLLGFEEAKQNWV 172 (180)
Q Consensus 124 vP~wv~~l~S~~~FglglLGiSYGiLSASWD~~r~GSlLG~eE~~~N~~ 172 (180)
-+.|.-=++-.++.-+..+|.+|++ |+|+=+..+-+...++
T Consensus 33 ~~~w~eEla~~l~v~~~flGa~~~~--------~~~~Hi~Vd~l~~~lp 73 (157)
T PRK09877 33 SILSVDELSRYLFVWLTFIGAIVAF--------MDNAHVQVTFLVEKLS 73 (157)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHH--------hcCCeeeeehHHHhCC
Confidence 3567777777777788888888875 4566677766665554
No 107
>PF02673 BacA: Bacitracin resistance protein BacA; InterPro: IPR003824 This is a family of small, highly hydrophobic proteins. Over-expression of this protein in Escherichia coli is associated with bacitracin resistance [], and the protein was originally proposed to be an undecaprenol kinase called bacA. BacA protein, however, does not show undecaprenol phosphokinase activity []. It is now known to be an undecaprenyl pyrophosphate phosphatase (3.6.1.27 from EC) and is renamed UppP. It is not the only protein associated with bacitracin resistance [, ].; GO: 0050380 undecaprenyl-diphosphatase activity, 0016311 dephosphorylation, 0016020 membrane
Probab=21.57 E-value=3.1e+02 Score=24.03 Aligned_cols=55 Identities=18% Similarity=0.322 Sum_probs=33.3
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHhhhhcccccCccHHH-HHHHHHHHHHhhhhhh
Q 030244 89 ERIIVRILVSVGVPLATGIASLHFFGVVKEKQLFDLPLWIP-LVTTFLTFGLSAVGIA 145 (180)
Q Consensus 89 ~RM~rRm~~f~GiP~~lG~~~f~~~Y~L~~~~~~dvP~wv~-~l~S~~~FglglLGiS 145 (180)
++-+-|.-+..++|..+|..++-+.-..... .+...|.. +++-++-|..|++.|.
T Consensus 179 r~~A~~fSFllsiP~ilga~~l~~~~~~~~~--~~~~~~~~~~ig~~~afv~g~l~i~ 234 (259)
T PF02673_consen 179 REEAARFSFLLSIPAILGAGLLELKDLFSAG--LDSGSWPPLLIGFVVAFVVGYLAIK 234 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--cChhhHHHHHHHHHHHHHHHHHHHH
Confidence 4556788899999999999987444333221 33333433 3344455666666553
No 108
>PRK10408 putative L-valine exporter; Provisional
Probab=21.50 E-value=1.5e+02 Score=23.74 Aligned_cols=20 Identities=20% Similarity=0.120 Sum_probs=14.5
Q ss_pred hhhHHHHHHHHHHHHhhhhcc
Q 030244 100 GVPLATGIASLHFFGVVKEKQ 120 (180)
Q Consensus 100 GiP~~lG~~~f~~~Y~L~~~~ 120 (180)
.+|++.|++++...|| +.+.
T Consensus 71 ~~ptlvGf~~l~~~fy-ktrs 90 (111)
T PRK10408 71 LLPTLVGFLVLGACFY-KTRS 90 (111)
T ss_pred HHHHHHHHHHHHHHHH-Hhcc
Confidence 4799999998876655 4443
No 109
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=21.35 E-value=2.2e+02 Score=23.36 Aligned_cols=31 Identities=23% Similarity=0.266 Sum_probs=18.4
Q ss_pred hhhhccccccCCcCCCCcccchHHHhhhHhh
Q 030244 143 GIAYGSLSSSWDAEKQGSLLGFEEAKQNWVE 173 (180)
Q Consensus 143 GiSYGiLSASWD~~r~GSlLG~eE~~~N~~r 173 (180)
++.+..++..=+++..|...|+...-.+.+.
T Consensus 347 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~ 377 (405)
T TIGR00891 347 GILPKHLGEYFPTDQRAAGLGFTYQLGNLGG 377 (405)
T ss_pred hhHHHHHhhhCCcchhHHHhhHHHHHHHHHH
Confidence 3444444444456677888888766555543
No 110
>PRK01821 hypothetical protein; Provisional
Probab=21.33 E-value=2.2e+02 Score=22.89 Aligned_cols=25 Identities=16% Similarity=0.275 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHH
Q 030244 85 QVVLERIIVRILVSVGVPLATGIASL 110 (180)
Q Consensus 85 evVs~RM~rRm~~f~GiP~~lG~~~f 110 (180)
|..++-+++-|++|. ||.+.|+.-.
T Consensus 61 ~~~a~~LL~~m~LfF-VPa~VGim~~ 85 (133)
T PRK01821 61 KPGCSLLIRYMALLF-VPIGVGVMQY 85 (133)
T ss_pred HHHHHHHHHHHHHHH-hhhHHHHHHH
Confidence 456778888888776 8988887754
No 111
>PF12597 DUF3767: Protein of unknown function (DUF3767); InterPro: IPR022533 This group of proteins includes mitochodrial cytochrome c oxidase proteins [], and some transmembrane domain-containing proteins of unknown function known as FAM36A. Proteins in this family are typically between 112 and 199 amino acids in length.
Probab=21.27 E-value=1.6e+02 Score=23.20 Aligned_cols=33 Identities=15% Similarity=0.173 Sum_probs=24.3
Q ss_pred HHHHhhhhhHHHHHHHHHHHHhhhhcccccCccHHH
Q 030244 94 RILVSVGVPLATGIASLHFFGVVKEKQLFDLPLWIP 129 (180)
Q Consensus 94 Rm~~f~GiP~~lG~~~f~~~Y~L~~~~~~dvP~wv~ 129 (180)
|=++..||-.++|+++. .+|....+.-.-+|++
T Consensus 41 R~slL~Gi~~G~~vG~~---~fl~~~~~~~A~nwav 73 (118)
T PF12597_consen 41 RDSLLYGIAGGFGVGGL---RFLFTSNPRKAANWAV 73 (118)
T ss_pred HHHHHHHHHHHHHHHhh---hhcccCCCccchhhhh
Confidence 66788899888888877 5666666666667776
No 112
>COG1183 PssA Phosphatidylserine synthase [Lipid metabolism]
Probab=21.04 E-value=1.4e+02 Score=26.13 Aligned_cols=24 Identities=8% Similarity=0.277 Sum_probs=17.6
Q ss_pred HhhhhhHHHHHHHHHHHHhhhhcc
Q 030244 97 VSVGVPLATGIASLHFFGVVKEKQ 120 (180)
Q Consensus 97 ~f~GiP~~lG~~~f~~~Y~L~~~~ 120 (180)
.|.|+|.-.++.++..++++....
T Consensus 125 ~F~GlPip~~a~~~~~~~~~~~~~ 148 (234)
T COG1183 125 FFIGLPIPAAAVVVVLLVLLYHSL 148 (234)
T ss_pred ceeecchHHHHHHHHHHHHHhccc
Confidence 578888888888777776665554
No 113
>PF01769 MgtE: Divalent cation transporter; InterPro: IPR006667 This entry represents the integral membrane part of the eubacterial MgtE family of magnesium transporters. Related regions are found also in archaebacterial and eukaryotic proteins. All the archaebacterial and eukaryotic examples have two copies of the region. This suggests that the eubacterial examples may act as dimers.Proteins in this entry probably transport Mg2+ or other divalent cations into the cell. The alignment contains two highly conserved aspartates that may be involved in cation binding.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport; PDB: 2YVX_D 2ZY9_A.
Probab=20.91 E-value=3.8e+02 Score=20.30 Aligned_cols=34 Identities=15% Similarity=0.202 Sum_probs=14.0
Q ss_pred ccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 030244 83 LPQVVLERIIVRILVSVGVPLATGIASLHFFGVV 116 (180)
Q Consensus 83 IPevVs~RM~rRm~~f~GiP~~lG~~~f~~~Y~L 116 (180)
.-+++.+.+....+...-+-...|+..+...|+.
T Consensus 34 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (135)
T PF01769_consen 34 RKRVLLKELLAGLLNGLLLGLILGLIAFIIAYFW 67 (135)
T ss_dssp HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHT
T ss_pred hHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555554433334444444444444444
No 114
>PF04279 IspA: Intracellular septation protein A ; InterPro: IPR006008 Intracellular septation protein A is a family of proteins which are essential for both normal cell division and bacterial virulence and are believed to play a role in the septation process [].; GO: 0016021 integral to membrane
Probab=20.54 E-value=2.5e+02 Score=23.13 Aligned_cols=44 Identities=16% Similarity=0.126 Sum_probs=23.6
Q ss_pred hhhhHHHHHHHHHHHHhhhhcccccCccHHHHHHHHHHHHHhhh
Q 030244 99 VGVPLATGIASLHFFGVVKEKQLFDLPLWIPLVTTFLTFGLSAV 142 (180)
Q Consensus 99 ~GiP~~lG~~~f~~~Y~L~~~~~~dvP~wv~~l~S~~~FglglL 142 (180)
.|+-.+++.+...+-|....+..++--.|+.++..+++-|++++
T Consensus 24 ~At~~~i~~~~~~v~~~~~~~r~v~~~~~is~~lv~vfG~lTl~ 67 (176)
T PF04279_consen 24 VATAVLIVATLAQVAYSWIRRRKVPKMQWISLVLVLVFGGLTLL 67 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcCchhHHHHHHHHHHHHHHHHH
Confidence 33333344343333333344457777778877666655555554
No 115
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=20.42 E-value=1.5e+02 Score=24.97 Aligned_cols=45 Identities=16% Similarity=0.126 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHhhhhhhhcc---ccccCCcCCCCcccchHHHhhhHh
Q 030244 128 IPLVTTFLTFGLSAVGIAYGS---LSSSWDAEKQGSLLGFEEAKQNWV 172 (180)
Q Consensus 128 v~~l~S~~~FglglLGiSYGi---LSASWD~~r~GSlLG~eE~~~N~~ 172 (180)
..+++..+++|+|.-.+.... +..-+++++.|...|+-..-.+.+
T Consensus 113 ~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g 160 (399)
T PRK05122 113 LLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGA 160 (399)
T ss_pred HHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHH
Confidence 334444445554433332221 234567788899888876655443
No 116
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=20.26 E-value=3.7e+02 Score=22.70 Aligned_cols=35 Identities=14% Similarity=0.039 Sum_probs=20.9
Q ss_pred hhhHHHHHHHHHHHHhhhhcccccCccHHHHHHHHHHH
Q 030244 100 GVPLATGIASLHFFGVVKEKQLFDLPLWIPLVTTFLTF 137 (180)
Q Consensus 100 GiP~~lG~~~f~~~Y~L~~~~~~dvP~wv~~l~S~~~F 137 (180)
+..+.+.++++..+|+|..+ +-..+-.++.+++.+
T Consensus 116 ~~~l~Lal~~~~~iyfl~~K---~~~~~rA~~~~~~~L 150 (194)
T PF11833_consen 116 GPGLQLALGLGACIYFLNRK---ERKLGRAFLWTLGGL 150 (194)
T ss_pred CcchHHHHHHHHHHHHHHHh---cchHHHHHHHHHHHH
Confidence 34455666677777888776 334555555555544
No 117
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=20.16 E-value=4e+02 Score=21.51 Aligned_cols=55 Identities=11% Similarity=-0.001 Sum_probs=31.2
Q ss_pred CccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhcccccCccHHHHHHHHHHHHHhhhhhh
Q 030244 82 HLPQVVLERIIVRILVSVGVPLATGIASLHFFGVVKEKQLFDLPLWIPLVTTFLTFGLSAVGIA 145 (180)
Q Consensus 82 ~IPevVs~RM~rRm~~f~GiP~~lG~~~f~~~Y~L~~~~~~dvP~wv~~l~S~~~FglglLGiS 145 (180)
+|||. -+++--++.-++|++.=++.-.+.+++-. ..+..++..++.|++|++.+-
T Consensus 68 ~i~e~---~llkaa~lvYllPLl~li~ga~l~~~~~~------~e~~~~~~~~~g~~~g~~~~r 122 (154)
T PRK10862 68 GIAEG---SLLRSALLVYMTPLVGLFLGAALFQLLFG------SDLAALCGALLGGVGGFLLAR 122 (154)
T ss_pred ecchh---hHHHHHHHHHHHHHHHHHHHHHHHHHHhc------chHHHHHHHHHHHHHHHHHHH
Confidence 57774 56666777788998755533233344422 134455555666666655544
No 118
>PF01226 Form_Nir_trans: Formate/nitrite transporter; InterPro: IPR000292 Proteins in this entry belong to the Formate-Nitrite Transporter (FNT) family (TC 2.A.44). The prokaryotic proteins of the FNT family probably function in the transport of the structurally related compounds, formate and nitrite. The homologous yeast protein may function as a short chain aliphatic carboxylate H+ symporter, transporting formate, acetate and propionate, and functioning primarily as an acetate uptake permease.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3Q7K_H 3KLY_E 3KLZ_A 3TDX_C 3TE2_B 3TDS_B 3TDR_E 3TDO_C 3TE1_B 3TDP_C ....
Probab=20.16 E-value=4.5e+02 Score=22.67 Aligned_cols=33 Identities=15% Similarity=0.054 Sum_probs=22.9
Q ss_pred HhhhhcccccCccHHHHHHHHHHHHHhhhhhhh
Q 030244 114 GVVKEKQLFDLPLWIPLVTTFLTFGLSAVGIAY 146 (180)
Q Consensus 114 Y~L~~~~~~dvP~wv~~l~S~~~FglglLGiSY 146 (180)
+........+..+.+.-++..++|.+|++-|-.
T Consensus 41 ~~~v~~~~~~~~~g~~~l~~g~~F~~Gl~lIv~ 73 (250)
T PF01226_consen 41 SLVVAAGFGAENPGLAKLVGGLVFPIGLVLIVF 73 (250)
T ss_dssp HHHHHTTCTTSTHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHhhcCcCCccHHHHHHHHHHHHHHHHHHH
Confidence 444455445666777777788889999987654
Done!