Query 030244
Match_columns 180
No_of_seqs 89 out of 91
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 17:23:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030244.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030244hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2f93_B Sensory rhodopsin II tr 79.0 1.1 3.9E-05 34.7 2.6 67 81-147 7-82 (122)
2 1vf5_F Protein PET M; photosyn 45.1 12 0.0004 23.5 1.9 23 130-152 6-28 (35)
3 1q90_M Cytochrome B6F complex 43.7 12 0.00043 23.9 1.9 22 130-151 7-28 (39)
4 1rh5_C Secbeta; protein transl 40.5 21 0.00073 23.8 2.8 45 100-149 8-52 (53)
5 3arc_J Photosystem II reaction 40.3 20 0.00069 23.1 2.5 23 122-145 6-28 (40)
6 3k6g_D Telomeric repeat-bindin 37.8 3.9 0.00013 26.7 -1.2 22 135-156 7-28 (42)
7 1tvs_A Transactivator protein; 26.1 21 0.00071 25.8 0.9 13 134-147 38-50 (75)
8 3o7q_A L-fucose-proton symport 25.6 1.3E+02 0.0046 23.7 5.7 50 125-174 115-167 (438)
9 4aps_A DI-OR tripeptide H+ sym 24.4 1.3E+02 0.0043 24.5 5.4 44 131-174 390-436 (491)
10 3mi9_C Protein TAT; P-TEFB, HI 20.2 28 0.00097 25.7 0.6 15 134-148 35-49 (86)
No 1
>2f93_B Sensory rhodopsin II transducer; menbrane protein complex, signal transduction, photocycle ST membrane protein; HET: BOG RET; 2.00A {Natronomonas pharaonis} SCOP: f.17.4.1
Probab=78.98 E-value=1.1 Score=34.70 Aligned_cols=67 Identities=13% Similarity=-0.129 Sum_probs=31.5
Q ss_pred CCccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhc----c-----cccCccHHHHHHHHHHHHHhhhhhhhc
Q 030244 81 DHLPQVVLERIIVRILVSVGVPLATGIASLHFFGVVKEK----Q-----LFDLPLWIPLVTTFLTFGLSAVGIAYG 147 (180)
Q Consensus 81 ~~IPevVs~RM~rRm~~f~GiP~~lG~~~f~~~Y~L~~~----~-----~~dvP~wv~~l~S~~~FglglLGiSYG 147 (180)
.-.|+.|.++--+||..+.+.-+.+-+++-+++|+-... . .-++-.|+..++-+++.++|++|+-.|
T Consensus 7 ~~~~~~v~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~q~~seA~A~~~~V~~~liil~~v~lv~LgvvG~~lG 82 (122)
T 2f93_B 7 LLLPSRVRHSYTGKMGAVFIFVGALTVLFGAIAYGEVTAAAATGDAAAVQEAAVSAILGLIILLGINLGLVAATLG 82 (122)
T ss_dssp ---------------------CHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred hhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345678999999999999998888888888887776544 2 234556888888888888999987654
No 2
>1vf5_F Protein PET M; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.25.1 PDB: 2d2c_F* 2e74_F* 2e75_F* 2e76_F* 2zt9_F*
Probab=45.14 E-value=12 Score=23.52 Aligned_cols=23 Identities=39% Similarity=0.570 Sum_probs=18.3
Q ss_pred HHHHHHHHHHhhhhhhhcccccc
Q 030244 130 LVTTFLTFGLSAVGIAYGSLSSS 152 (180)
Q Consensus 130 ~l~S~~~FglglLGiSYGiLSAS 152 (180)
+-+..++|++-++|++.|++.-.
T Consensus 6 f~~A~i~~~LvLvGla~Gf~LLk 28 (35)
T 1vf5_F 6 LYAALLSFGLIFVGWGLGVLLLK 28 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhe
Confidence 45667899999999999987543
No 3
>1q90_M Cytochrome B6F complex subunit PETM; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.25.1
Probab=43.66 E-value=12 Score=23.91 Aligned_cols=22 Identities=27% Similarity=0.371 Sum_probs=17.9
Q ss_pred HHHHHHHHHHhhhhhhhccccc
Q 030244 130 LVTTFLTFGLSAVGIAYGSLSS 151 (180)
Q Consensus 130 ~l~S~~~FglglLGiSYGiLSA 151 (180)
+-+..++|++-++|++.|++.-
T Consensus 7 f~~A~i~~~L~LvGla~Gf~LL 28 (39)
T 1q90_M 7 AGTALTMVGMTLVGLAIGFVLL 28 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4567889999999999998753
No 4
>1rh5_C Secbeta; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.29.1 PDB: 1rhz_C 2yxq_C 2yxr_C 3kcr_C 3dkn_C 3bo1_C 3bo0_C
Probab=40.49 E-value=21 Score=23.80 Aligned_cols=45 Identities=13% Similarity=0.178 Sum_probs=25.8
Q ss_pred hhhHHHHHHHHHHHHhhhhcccccCccHHHHHHHHHHHHHhhhhhhhccc
Q 030244 100 GVPLATGIASLHFFGVVKEKQLFDLPLWIPLVTTFLTFGLSAVGIAYGSL 149 (180)
Q Consensus 100 GiP~~lG~~~f~~~Y~L~~~~~~dvP~wv~~l~S~~~FglglLGiSYGiL 149 (180)
|...+.|+.= ||=.+...+.+-|..+++.+ ++|++.++.++|++|
T Consensus 8 ~~~ssaGLvr----yy~ee~~giKi~P~~Vl~~s-i~~i~~V~~L~~~~~ 52 (53)
T 1rh5_C 8 GLATSAGLIR----YMDETFSKIRVKPEHVIGVT-VAFVIIEAILTYGRF 52 (53)
T ss_dssp -----------------CCCCSCCCCHHHHHHHH-HHHHHHHHHHHHTCC
T ss_pred CCcccccchh----hhhccCCccccCCeehhhhH-HHHHHHHHHHHHHHh
Confidence 5666666644 34466668999999997775 567777999999876
No 5
>3arc_J Photosystem II reaction center protein J; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_J* 3a0b_J* 3a0h_J* 2axt_J* 3bz1_J* 3bz2_J* 3kzi_J* 3prq_J* 3prr_J*
Probab=40.33 E-value=20 Score=23.14 Aligned_cols=23 Identities=26% Similarity=0.288 Sum_probs=17.2
Q ss_pred ccCccHHHHHHHHHHHHHhhhhhh
Q 030244 122 FDLPLWIPLVTTFLTFGLSAVGIA 145 (180)
Q Consensus 122 ~dvP~wv~~l~S~~~FglglLGiS 145 (180)
-.+|.|++-.+ .++..++++||-
T Consensus 6 GRiPLWlvgtv-~G~~vi~~~giF 28 (40)
T 3arc_J 6 GRIPLWIVATV-AGMGVIVIVGLF 28 (40)
T ss_dssp TSSCHHHHHHH-HHHHHHHHHHHH
T ss_pred CcccEEeeeee-hhhhhhheeeEE
Confidence 46899997554 567778899874
No 6
>3k6g_D Telomeric repeat-binding factor 2; helix, chromosomal protein, nucleus, phosphoprotein, telomer cycle, DNA-binding, protein binding; 1.95A {Homo sapiens}
Probab=37.85 E-value=3.9 Score=26.73 Aligned_cols=22 Identities=32% Similarity=0.501 Sum_probs=18.8
Q ss_pred HHHHHhhhhhhhccccccCCcC
Q 030244 135 LTFGLSAVGIAYGSLSSSWDAE 156 (180)
Q Consensus 135 ~~FglglLGiSYGiLSASWD~~ 156 (180)
.+||+..|--++-.||.|||+|
T Consensus 7 tT~Gi~tLk~AFK~Ls~sqD~e 28 (42)
T 3k6g_D 7 TTIGMMTLKAAFKTLSGAQDSE 28 (42)
T ss_dssp -CCCHHHHHHHHHHHHCCTTHH
T ss_pred ceeeHHHHHHHHHHhccCCCcH
Confidence 4678888888999999999987
No 7
>1tvs_A Transactivator protein; transcription regulation; NMR {Equine infectious anemia virus} SCOP: j.40.1.1 PDB: 1tvt_A
Probab=26.05 E-value=21 Score=25.79 Aligned_cols=13 Identities=38% Similarity=0.460 Sum_probs=10.5
Q ss_pred HHHHHHhhhhhhhc
Q 030244 134 FLTFGLSAVGIAYG 147 (180)
Q Consensus 134 ~~~FglglLGiSYG 147 (180)
.+||.- -|||+||
T Consensus 38 qvCF~~-gLGIsYG 50 (75)
T 1tvs_A 38 QLCFLR-SLGIDYL 50 (75)
T ss_dssp HHHHHH-CSTTHHH
T ss_pred hhhhcc-ccccccc
Confidence 467777 8999998
No 8
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=25.57 E-value=1.3e+02 Score=23.73 Aligned_cols=50 Identities=6% Similarity=-0.053 Sum_probs=29.3
Q ss_pred ccHHHHHHHHHHHHHhhhh---hhhccccccCCcCCCCcccchHHHhhhHhhh
Q 030244 125 PLWIPLVTTFLTFGLSAVG---IAYGSLSSSWDAEKQGSLLGFEEAKQNWVEI 174 (180)
Q Consensus 125 P~wv~~l~S~~~FglglLG---iSYGiLSASWD~~r~GSlLG~eE~~~N~~rm 174 (180)
+....+++..++.|+|.-+ ..+..++...++++.|..+|+-..-.+++.+
T Consensus 115 ~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ 167 (438)
T 3o7q_A 115 MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAI 167 (438)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHH
Confidence 3445555555555554422 2334445555667778888888877776543
No 9
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=24.41 E-value=1.3e+02 Score=24.55 Aligned_cols=44 Identities=5% Similarity=-0.077 Sum_probs=27.8
Q ss_pred HHHHHHHHHhhhh---hhhccccccCCcCCCCcccchHHHhhhHhhh
Q 030244 131 VTTFLTFGLSAVG---IAYGSLSSSWDAEKQGSLLGFEEAKQNWVEI 174 (180)
Q Consensus 131 l~S~~~FglglLG---iSYGiLSASWD~~r~GSlLG~eE~~~N~~rm 174 (180)
+..++++|+|... ..+...+..-.++..|...|+-..-.+++..
T Consensus 390 ~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ 436 (491)
T 4aps_A 390 VGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSA 436 (491)
T ss_dssp HHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence 3344555544322 3455666666777789999998877776643
No 10
>3mi9_C Protein TAT; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Human immunodeficiency virus type 1} PDB: 3mia_C* 1jfw_A 1tbc_A 1tiv_A 1k5k_A
Probab=20.18 E-value=28 Score=25.66 Aligned_cols=15 Identities=40% Similarity=0.669 Sum_probs=12.4
Q ss_pred HHHHHHhhhhhhhcc
Q 030244 134 FLTFGLSAVGIAYGS 148 (180)
Q Consensus 134 ~~~FglglLGiSYGi 148 (180)
.++|.-=-||||||-
T Consensus 35 q~CFl~KGLGIsYgR 49 (86)
T 3mi9_C 35 QVCFITKALGISYGR 49 (86)
T ss_dssp HHHHHHTTSCCCSCC
T ss_pred hhhhcccCCcccccc
Confidence 368888889999995
Done!