Query 030244
Match_columns 180
No_of_seqs 89 out of 91
Neff 3.3
Searched_HMMs 13730
Date Mon Mar 25 17:23:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030244.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/030244hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2axtj1 f.23.32.1 (J:7-40) Pho 29.1 19 0.0014 21.0 2.5 20 124-144 2-21 (34)
2 d1pw4a_ f.38.1.1 (A:) Glycerol 26.8 29 0.0021 25.4 3.8 30 144-173 136-165 (447)
3 d1wpga4 f.33.1.1 (A:1-124,A:24 24.9 46 0.0033 27.0 5.1 36 71-110 295-330 (472)
4 d1ly1a_ c.37.1.1 (A:) Polynucl 20.3 23 0.0017 22.9 1.9 23 81-103 129-151 (152)
5 d2ot9a1 c.52.1.33 (A:2-180) Hy 16.1 17 0.0012 27.8 0.3 16 84-99 32-47 (179)
6 d1iwga8 f.35.1.1 (A:513-566,A: 13.0 56 0.0041 24.0 2.6 27 83-109 18-44 (222)
7 d2g3wa1 c.52.1.33 (A:4-182) Hy 12.7 23 0.0017 26.9 0.3 16 84-99 30-45 (179)
8 d1wy5a2 d.229.1.1 (A:217-311) 12.3 58 0.0043 21.3 2.3 18 80-97 43-60 (95)
9 d1i7da_ e.10.1.1 (A:) DNA topo 11.9 16 0.0011 31.5 -1.0 26 154-179 103-137 (620)
10 d1qmha1 c.47.2.1 (A:185-279) R 11.1 56 0.0041 21.7 1.9 14 82-95 16-29 (95)
No 1
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=29.08 E-value=19 Score=21.00 Aligned_cols=20 Identities=30% Similarity=0.461 Sum_probs=13.9
Q ss_pred CccHHHHHHHHHHHHHhhhhh
Q 030244 124 LPLWIPLVTTFLTFGLSAVGI 144 (180)
Q Consensus 124 vP~wv~~l~S~~~FglglLGi 144 (180)
+|.|++-.+ .++-.++++||
T Consensus 2 iPLWlv~tv-~G~~vi~~vG~ 21 (34)
T d2axtj1 2 IPLWIVATV-AGMGVIVIVGL 21 (34)
T ss_dssp CCHHHHHHH-HHHHHHHHHHH
T ss_pred CcEEEeeeh-hhhhhHhheee
Confidence 788987544 56666777776
No 2
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=26.82 E-value=29 Score=25.35 Aligned_cols=30 Identities=10% Similarity=0.204 Sum_probs=19.3
Q ss_pred hhhccccccCCcCCCCcccchHHHhhhHhh
Q 030244 144 IAYGSLSSSWDAEKQGSLLGFEEAKQNWVE 173 (180)
Q Consensus 144 iSYGiLSASWD~~r~GSlLG~eE~~~N~~r 173 (180)
..+.+++...++++.|...|+-..-.+++-
T Consensus 136 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~ 165 (447)
T d1pw4a_ 136 PCGRTMVHWWSQKERGGIVSVWNCAHNVGG 165 (447)
T ss_dssp HHHHHHHTTCTTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccccccccccccchhh
Confidence 344455555566667888888777666553
No 3
>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase, transmembrane domain M {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=24.95 E-value=46 Score=26.98 Aligned_cols=36 Identities=11% Similarity=0.123 Sum_probs=21.0
Q ss_pred ccCCCCCCCCCCccHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 030244 71 ENNNNNNSDEDHLPQVVLERIIVRILVSVGVPLATGIASL 110 (180)
Q Consensus 71 ~~~~~~~~~~~~IPevVs~RM~rRm~~f~GiP~~lG~~~f 110 (180)
|++++.+.++.-+. ++|++|+....++-.+..+++|
T Consensus 295 M~~~Pr~~~~~li~----~~~~~~i~~~g~~~~~~~~~~~ 330 (472)
T d1wpga4 295 MDRPPRSPKEPLIS----GWLFFRYMAIGGYVGAATVGAA 330 (472)
T ss_dssp GGSCCCCTTCCSSC----THHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCCCCCccccC----HHHHHHHHHHHHHHHHHHHHHH
Confidence 77766666655554 5888887555544433333333
No 4
>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}
Probab=20.28 E-value=23 Score=22.86 Aligned_cols=23 Identities=22% Similarity=0.405 Sum_probs=20.0
Q ss_pred CCccHHHHHHHHHHHHHhhhhhH
Q 030244 81 DHLPQVVLERIIVRILVSVGVPL 103 (180)
Q Consensus 81 ~~IPevVs~RM~rRm~~f~GiP~ 103 (180)
..+|++|.+||.+|+--+.|.|.
T Consensus 129 ~~~~~~~i~~~~~~~~~~~~~~~ 151 (152)
T d1ly1a_ 129 KAVPIDVLRSMYKSMREYLGLPV 151 (152)
T ss_dssp GCCCHHHHHHHHHHHHHHHTCCC
T ss_pred CCCCHHHHHHHHHHHHhhcCCCC
Confidence 46899999999999999888874
No 5
>d2ot9a1 c.52.1.33 (A:2-180) Hypothetical protein PSPTO1487 {Pseudomonas syringae pv. tomato [TaxId: 323]}
Probab=16.07 E-value=17 Score=27.82 Aligned_cols=16 Identities=38% Similarity=0.553 Sum_probs=12.4
Q ss_pred cHHHHHHHHHHHHHhh
Q 030244 84 PQVVLERIIVRILVSV 99 (180)
Q Consensus 84 PevVs~RM~rRm~~f~ 99 (180)
|-|-.+|||-|++.|+
T Consensus 32 PSEt~eRmm~RlLAfa 47 (179)
T d2ot9a1 32 PSETEERMTVRLLAYA 47 (179)
T ss_dssp TTSCHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHH
Confidence 4444589999999886
No 6
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=12.95 E-value=56 Score=24.01 Aligned_cols=27 Identities=4% Similarity=-0.111 Sum_probs=18.8
Q ss_pred ccHHHHHHHHHHHHHhhhhhHHHHHHH
Q 030244 83 LPQVVLERIIVRILVSVGVPLATGIAS 109 (180)
Q Consensus 83 IPevVs~RM~rRm~~f~GiP~~lG~~~ 109 (180)
....+.+|..|+|.+...+|.++++.+
T Consensus 18 ~v~~~~~r~~r~~~~y~~l~~g~~~~f 44 (222)
T d1iwga8 18 SVGGILRSTGRYLVLYLIIVVGMAYLF 44 (222)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHhhhheeee
Confidence 355667777788888777777766554
No 7
>d2g3wa1 c.52.1.33 (A:4-182) Hypothetical protein XAC2396 {Xanthomonas axonopodis pv. citri [TaxId: 92829]}
Probab=12.68 E-value=23 Score=26.94 Aligned_cols=16 Identities=38% Similarity=0.580 Sum_probs=12.2
Q ss_pred cHHHHHHHHHHHHHhh
Q 030244 84 PQVVLERIIVRILVSV 99 (180)
Q Consensus 84 PevVs~RM~rRm~~f~ 99 (180)
|-|--+|||-|++.|+
T Consensus 30 PSEt~eRmm~RlLAfa 45 (179)
T d2g3wa1 30 PSETDERLMVRLLAFA 45 (179)
T ss_dssp TTCCHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHH
Confidence 3344589999999886
No 8
>d1wy5a2 d.229.1.1 (A:217-311) TilS-like protein Aq_1887 {Aquifex aeolicus [TaxId: 63363]}
Probab=12.31 E-value=58 Score=21.28 Aligned_cols=18 Identities=17% Similarity=0.292 Sum_probs=15.3
Q ss_pred CCCccHHHHHHHHHHHHH
Q 030244 80 EDHLPQVVLERIIVRILV 97 (180)
Q Consensus 80 ~~~IPevVs~RM~rRm~~ 97 (180)
-.++|..+.+|++|+++.
T Consensus 43 l~~lp~ALqrRvir~~l~ 60 (95)
T d1wy5a2 43 LKEKPLALQRRVIRKFIG 60 (95)
T ss_dssp HTTSCHHHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHH
Confidence 357999999999999873
No 9
>d1i7da_ e.10.1.1 (A:) DNA topoisomerase III {Escherichia coli [TaxId: 562]}
Probab=11.95 E-value=16 Score=31.55 Aligned_cols=26 Identities=27% Similarity=0.217 Sum_probs=20.2
Q ss_pred CcCCCCcccchHHHh---------hhHhhhccccC
Q 030244 154 DAEKQGSLLGFEEAK---------QNWVEIWNEDD 179 (180)
Q Consensus 154 D~~r~GSlLG~eE~~---------~N~~rmw~~~~ 179 (180)
|++|||-++||+-+. .++.|+|=.++
T Consensus 103 D~DREGE~Ia~~i~~~~~~~~~~~~~v~R~~f~~i 137 (620)
T d1i7da_ 103 DPDREGQLLVDEVLDYLQLAPEKRQQVQRCLINDL 137 (620)
T ss_dssp CSSHHHHHHHHHHHHHTTCCHHHHHTCEECCCSCC
T ss_pred CCCcchhHHHHHHHHHhccccccCCceEEEEeecC
Confidence 999999999998764 45668876554
No 10
>d1qmha1 c.47.2.1 (A:185-279) RNA 3'-terminal phosphate cyclase, RPTC, insert domain {Escherichia coli [TaxId: 562]}
Probab=11.12 E-value=56 Score=21.67 Aligned_cols=14 Identities=36% Similarity=0.525 Sum_probs=11.9
Q ss_pred CccHHHHHHHHHHH
Q 030244 82 HLPQVVLERIIVRI 95 (180)
Q Consensus 82 ~IPevVs~RM~rRm 95 (180)
.||..|++||+.+.
T Consensus 16 ~LP~~Va~R~~~~a 29 (95)
T d1qmha1 16 GVPRHVAEREIATL 29 (95)
T ss_dssp SSCHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHH
Confidence 48999999998765
Done!