BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030245
(180 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1DYW|A Chain A, Biochemical And Structural Characterization Of A Divergent
Loop Cyclophilin From Caenorhabditis Elegans
pdb|1E3B|A Chain A, Cyclophilin 3 From C.Elegans Complexed With Aup(Et)3
pdb|1E8K|A Chain A, Cyclophilin 3 Complexed With Dipeptide Ala-Pro
pdb|2IGV|A Chain A, Cyclophilin 3 Complexed With Dipeptide Ser-Pro
pdb|2IGW|A Chain A, Cyclophilin 3 Complexed With Dipeptide Gly-Pro
Length = 173
Score = 238 bits (608), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 114/169 (67%), Positives = 133/169 (78%)
Query: 1 MANPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSF 60
M+ KVFFD+T+GG+ +GRIVMEL+ DV P+TA NFRALCTGE GIGKSGKPLH+KGS F
Sbjct: 1 MSRSKVFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKF 60
Query: 61 HRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFF 120
HR+IP FM Q ESIYG KF DENF +KHTGPG+LSMANAGP TNGSQFF
Sbjct: 61 HRIIPNFMIQGGDFTRGNGTGGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFF 120
Query: 121 ISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKKPVVIADCG 169
+ KTEWLDGKHV FG+VVEG++VVKA+E GS+SG+ K +IADCG
Sbjct: 121 LCTVKTEWLDGKHVVFGRVVEGLDVVKAVESNGSQSGKPVKDCMIADCG 169
>pdb|3RDD|A Chain A, Human Cyclophilin A Complexed With An Inhibitor
Length = 184
Score = 228 bits (581), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 110/169 (65%), Positives = 125/169 (73%), Gaps = 7/169 (4%)
Query: 1 MANPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSF 60
M NP VFFD+ V G+P GR+ ELFAD P+TAENFRAL TGEKG G YKGS F
Sbjct: 20 MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCF 72
Query: 61 HRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFF 120
HR+IPGFMCQ +SIYG KF DENF+ KHTGPGILSMANAGP TNGSQFF
Sbjct: 73 HRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFF 132
Query: 121 ISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKKPVVIADCG 169
I KTEWLDGKHV FG+V EGMN+V+A+E+ GSR+G+T K + IADCG
Sbjct: 133 ICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCG 181
>pdb|2WLW|A Chain A, Structure Of The N-Terminal Capsid Domain Of Hiv-2
pdb|4DGA|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-1
Ca(O-Loop) Complex
pdb|4DGA|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-1
Ca(O-Loop) Complex
pdb|4DGB|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-2 Ca
Cyclophilin- Binding Loop Complex
pdb|4DGC|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|C Chain C, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|D Chain D, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|E Chain E, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
Length = 165
Score = 228 bits (581), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 110/169 (65%), Positives = 125/169 (73%), Gaps = 7/169 (4%)
Query: 1 MANPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSF 60
M NP VFFD+ V G+P GR+ ELFAD P+TAENFRAL TGEKG G YKGS F
Sbjct: 1 MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCF 53
Query: 61 HRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFF 120
HR+IPGFMCQ +SIYG KF DENF+ KHTGPGILSMANAGP TNGSQFF
Sbjct: 54 HRIIPGFMCQGGNFTHHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFF 113
Query: 121 ISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKKPVVIADCG 169
I KTEWLDGKHV FG+V EGMN+V+A+E+ GSR+G+T K + IADCG
Sbjct: 114 ICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCG 162
>pdb|2RMA|A Chain A, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|C Chain C, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|E Chain E, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|G Chain G, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|I Chain I, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|K Chain K, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|M Chain M, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|O Chain O, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|Q Chain Q, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|S Chain S, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|A Chain A, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|C Chain C, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|E Chain E, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|G Chain G, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|I Chain I, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|K Chain K, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|M Chain M, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|O Chain O, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|Q Chain Q, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|S Chain S, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|1CWC|A Chain A, Improved Binding Affinity For Cyclophilin A By A
Cyclosporin Derivative Singly Modified At Its Effector
Domain
pdb|1CWB|A Chain A, The X-Ray Structure Of (Mebm2t)1-Cyclosporin Complexed
With Cyclophilin A Provides An Explanation For Its
Anomalously High Immunosuppressive Activity
pdb|1CWA|A Chain A, X-Ray Structure Of A Monomeric Cyclophilin A-Cyclosporin A
Crystal Complex At 2.1 Angstroms Resolution
pdb|1MIK|A Chain A, The Role Of Water Molecules In The Structure-Based Design
Of (5- Hydroxynorvaline)-2-Cyclosporin: Synthesis,
Biological Activity, And Crystallographic Analysis With
Cyclophilin A
pdb|1FGL|A Chain A, Cyclophilin A Complexed With A Fragment Of Hiv-1 Gag
Protein
pdb|1AK4|A Chain A, Human Cyclophilin A Bound To The Amino-Terminal Domain Of
Hiv-1 Capsid
pdb|1AK4|B Chain B, Human Cyclophilin A Bound To The Amino-Terminal Domain Of
Hiv-1 Capsid
pdb|1CWF|A Chain A, Human Cyclophilin A Complexed With 2-Val Cyclosporin
pdb|1CWH|A Chain A, Human Cyclophilin A Complexed With 3-D-Ser Cyclosporin
pdb|1CWK|A Chain A, Human Cyclophilin A Complexed With 1-(6,7-Dihydro)mebmt
2-Val 3-D-(2- S-Methyl)sarcosine Cyclosporin
pdb|1CWL|A Chain A, Human Cyclophilin A Complexed With 4 4-Hydroxy-Meleu
Cyclosporin
pdb|1CWM|A Chain A, Human Cyclophilin A Complexed With 4 Meile Cyclosporin
pdb|1CWI|A Chain A, Human Cyclophilin A Complexed With 2-Val
3-(N-Methyl)-D-Alanine Cyclosporin
pdb|1CWJ|A Chain A, Human Cyclophilin A Complexed With 2-Val
3-S-Methyl-Sarcosine Cyclosporin
pdb|1VBS|A Chain A, Structure Of Cyclophilin Complexed With (D)ala Containing
Tetrapeptide
pdb|1VBT|A Chain A, Structure Of Cyclophilin Complexed With Sulfur-Substituted
Tetrapeptide Aapf
pdb|1VBT|B Chain B, Structure Of Cyclophilin Complexed With Sulfur-Substituted
Tetrapeptide Aapf
pdb|1M63|C Chain C, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
pdb|1M63|G Chain G, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
pdb|1MF8|C Chain C, Crystal Structure Of Human Calcineurin Complexed With
Cyclosporin A And Human Cyclophilin
pdb|1NMK|A Chain A, The Sanglifehrin-Cyclophilin Interaction: Degradation
Work, Synthetic Macrocyclic Analogues, X-Ray Crystal
Structure And Binding Data
pdb|1NMK|B Chain B, The Sanglifehrin-Cyclophilin Interaction: Degradation
Work, Synthetic Macrocyclic Analogues, X-Ray Crystal
Structure And Binding Data
pdb|1M9C|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type Complex.
pdb|1M9C|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type Complex.
pdb|1M9D|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) O-Type Chimera Complex.
pdb|1M9D|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) O-Type Chimera Complex.
pdb|1M9F|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m Complex.
pdb|1M9F|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m Complex.
pdb|1M9X|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|E Chain E, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|F Chain F, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9Y|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|E Chain E, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|F Chain F, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1W8L|A Chain A, Enzymatic And Structural Characterization Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1W8M|A Chain A, Enzymatic And Structural Characterisation Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1W8V|A Chain A, Enzymatic And Structural Characterization Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1YND|A Chain A, Structure Of Human Cyclophilin A In Complex With The Novel
Immunosuppressant Sanglifehrin A At 1.6a Resolution
pdb|1YND|B Chain B, Structure Of Human Cyclophilin A In Complex With The Novel
Immunosuppressant Sanglifehrin A At 1.6a Resolution
pdb|1ZKF|A Chain A, Cyrstal Structure Of Human Cyclophilin-A In Complex With
Suc-Agpf-Pna
pdb|1ZKF|B Chain B, Cyrstal Structure Of Human Cyclophilin-A In Complex With
Suc-Agpf-Pna
pdb|1OCA|A Chain A, Human Cyclophilin A, Unligated, Nmr, 20 Structures
pdb|2CPL|A Chain A, Similarities And Differences Between Human Cyclophilin A
And Other Beta-Barrel Structures. Structural Refinement
At 1.63 Angstroms Resolution
pdb|3CYS|A Chain A, Determination Of The Nmr Solution Structure Of The
Cyclophilin A- Cyclosporin A Complex
pdb|3K0M|A Chain A, Cryogenic Structure Of Cypa
pdb|3K0N|A Chain A, Room Temperature Structure Of Cypa
pdb|3ODI|A Chain A, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|C Chain C, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|E Chain E, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|G Chain G, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|I Chain I, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|K Chain K, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|M Chain M, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|O Chain O, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|Q Chain Q, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|S Chain S, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODL|A Chain A, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|C Chain C, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|E Chain E, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|G Chain G, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|I Chain I, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|K Chain K, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|M Chain M, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|O Chain O, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|Q Chain Q, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|S Chain S, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
Length = 165
Score = 228 bits (580), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 110/169 (65%), Positives = 125/169 (73%), Gaps = 7/169 (4%)
Query: 1 MANPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSF 60
M NP VFFD+ V G+P GR+ ELFAD P+TAENFRAL TGEKG G YKGS F
Sbjct: 1 MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCF 53
Query: 61 HRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFF 120
HR+IPGFMCQ +SIYG KF DENF+ KHTGPGILSMANAGP TNGSQFF
Sbjct: 54 HRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFF 113
Query: 121 ISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKKPVVIADCG 169
I KTEWLDGKHV FG+V EGMN+V+A+E+ GSR+G+T K + IADCG
Sbjct: 114 ICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCG 162
>pdb|4DGD|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant
pdb|4DGE|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant, Hiv-1 Ca(O-Loop) Complex
pdb|4DGE|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant, Hiv-1 Ca(O-Loop) Complex
Length = 165
Score = 228 bits (580), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 110/169 (65%), Positives = 125/169 (73%), Gaps = 7/169 (4%)
Query: 1 MANPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSF 60
M NP VFFD+ V G+P GR+ ELFAD P+TAENFRAL TGEKG G YKGS F
Sbjct: 1 MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCF 53
Query: 61 HRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFF 120
HR+IPGFMCQ +SIYG KF DENF+ KHTGPGILSMANAGP TNGSQFF
Sbjct: 54 HRIIPGFMCQGGNFTHCNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFF 113
Query: 121 ISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKKPVVIADCG 169
I KTEWLDGKHV FG+V EGMN+V+A+E+ GSR+G+T K + IADCG
Sbjct: 114 ICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCG 162
>pdb|1M9E|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a Complex.
pdb|1M9E|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a Complex
Length = 164
Score = 228 bits (580), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 110/169 (65%), Positives = 125/169 (73%), Gaps = 7/169 (4%)
Query: 1 MANPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSF 60
M NP VFFD+ V G+P GR+ ELFAD P+TAENFRAL TGEKG G YKGS F
Sbjct: 1 MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCF 53
Query: 61 HRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFF 120
HR+IPGFMCQ +SIYG KF DENF+ KHTGPGILSMANAGP TNGSQFF
Sbjct: 54 HRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFF 113
Query: 121 ISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKKPVVIADCG 169
I KTEWLDGKHV FG+V EGMN+V+A+E+ GSR+G+T K + IADCG
Sbjct: 114 ICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCG 162
>pdb|2XGY|B Chain B, Complex Of Rabbit Endogenous Lentivirus (Relik)capsid With
Cyclophilin A
Length = 173
Score = 227 bits (578), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 110/169 (65%), Positives = 125/169 (73%), Gaps = 7/169 (4%)
Query: 1 MANPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSF 60
M NP VFFD+ V G+P GR+ ELFAD P+TAENFRAL TGEKG G YKGS F
Sbjct: 9 MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCF 61
Query: 61 HRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFF 120
HR+IPGFMCQ +SIYG KF DENF+ KHTGPGILSMANAGP TNGSQFF
Sbjct: 62 HRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFF 121
Query: 121 ISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKKPVVIADCG 169
I KTEWLDGKHV FG+V EGMN+V+A+E+ GSR+G+T K + IADCG
Sbjct: 122 ICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCG 170
>pdb|3K0O|A Chain A, Room Temperature Structure Of Cypa Mutant Ser99thr
pdb|3K0P|A Chain A, Cryogenic Structure Of Cypa Mutant Ser99thr
pdb|3K0Q|A Chain A, Cryogenic Structure Of Cypa Mutant Ser99thr (2)
Length = 165
Score = 227 bits (578), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 109/169 (64%), Positives = 125/169 (73%), Gaps = 7/169 (4%)
Query: 1 MANPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSF 60
M NP VFFD+ V G+P GR+ ELFAD P+TAENFRAL TGEKG G YKGS F
Sbjct: 1 MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCF 53
Query: 61 HRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFF 120
HR+IPGFMCQ +SIYG KF DENF+ KHTGPGIL+MANAGP TNGSQFF
Sbjct: 54 HRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILTMANAGPNTNGSQFF 113
Query: 121 ISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKKPVVIADCG 169
I KTEWLDGKHV FG+V EGMN+V+A+E+ GSR+G+T K + IADCG
Sbjct: 114 ICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCG 162
>pdb|3K0R|A Chain A, Cryogenic Structure Of Cypa Mutant Arg55lys
Length = 165
Score = 226 bits (577), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 109/169 (64%), Positives = 125/169 (73%), Gaps = 7/169 (4%)
Query: 1 MANPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSF 60
M NP VFFD+ V G+P GR+ ELFAD P+TAENFRAL TGEKG G YKGS F
Sbjct: 1 MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCF 53
Query: 61 HRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFF 120
H++IPGFMCQ +SIYG KF DENF+ KHTGPGILSMANAGP TNGSQFF
Sbjct: 54 HKIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFF 113
Query: 121 ISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKKPVVIADCG 169
I KTEWLDGKHV FG+V EGMN+V+A+E+ GSR+G+T K + IADCG
Sbjct: 114 ICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCG 162
>pdb|2X2C|K Chain K, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|M Chain M, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|O Chain O, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|Q Chain Q, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|S Chain S, Acetyl-Cypa:cyclosporine Complex
pdb|2X2D|B Chain B, Acetyl-Cypa:hiv-1 N-Term Capsid Domain Complex
pdb|2X2D|C Chain C, Acetyl-Cypa:hiv-1 N-Term Capsid Domain Complex
Length = 165
Score = 226 bits (575), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 109/169 (64%), Positives = 124/169 (73%), Gaps = 7/169 (4%)
Query: 1 MANPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSF 60
M NP VFFD+ V G+P GR+ ELFAD P+TAENFRAL TGEKG G YKGS F
Sbjct: 1 MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCF 53
Query: 61 HRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFF 120
HR+IPGFMCQ +SIYG KF DENF+ KHTGPGILSMANAGP TNGSQFF
Sbjct: 54 HRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFF 113
Query: 121 ISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKKPVVIADCG 169
I KTEWLDG HV FG+V EGMN+V+A+E+ GSR+G+T K + IADCG
Sbjct: 114 ICTAKTEWLDGXHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCG 162
>pdb|1BCK|A Chain A, Human Cyclophilin A Complexed With 2-Thr Cyclosporin
pdb|1CWO|A Chain A, Human Cyclophilin A Complexed With Thr2, Leu5, D-Hiv8,
Leu10 Cyclosporin
Length = 165
Score = 225 bits (574), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 109/167 (65%), Positives = 124/167 (74%), Gaps = 7/167 (4%)
Query: 3 NPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHR 62
NP VFFD+ V G+P GR+ ELFAD P+TAENFRAL TGEKG G YKGS FHR
Sbjct: 3 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHR 55
Query: 63 VIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFIS 122
+IPGFMCQ +SIYG KF DENF+ KHTGPGILSMANAGP TNGSQFFI
Sbjct: 56 IIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFIC 115
Query: 123 AGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKKPVVIADCG 169
KTEWLDGKHV FG+V EGMN+V+A+E+ GSR+G+T K + IADCG
Sbjct: 116 TAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCG 162
>pdb|5CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Gly-Pro
pdb|4CYH|A Chain A, Cyclophilin A Complexed With Dipeptide His-Pro
pdb|3CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Ser-Pro
pdb|2CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Ala-Pro
pdb|1RMH|A Chain A, Recombinant Cyclophilin A From Human T Cell
pdb|1RMH|B Chain B, Recombinant Cyclophilin A From Human T Cell
pdb|1AWQ|A Chain A, Cypa Complexed With Hagpia (Pseudo-Symmetric Monomer)
pdb|1AWR|A Chain A, Cypa Complexed With Hagpia
pdb|1AWR|B Chain B, Cypa Complexed With Hagpia
pdb|1AWR|C Chain C, Cypa Complexed With Hagpia
pdb|1AWR|D Chain D, Cypa Complexed With Hagpia
pdb|1AWR|E Chain E, Cypa Complexed With Hagpia
pdb|1AWR|F Chain F, Cypa Complexed With Hagpia
pdb|1AWU|A Chain A, Cypa Complexed With Hvgpia (Pseudo-Symmetric Monomer)
pdb|1AWV|A Chain A, Cypa Complexed With Hvgpia
pdb|1AWV|B Chain B, Cypa Complexed With Hvgpia
pdb|1AWV|C Chain C, Cypa Complexed With Hvgpia
pdb|1AWV|D Chain D, Cypa Complexed With Hvgpia
pdb|1AWV|E Chain E, Cypa Complexed With Hvgpia
pdb|1AWV|F Chain F, Cypa Complexed With Hvgpia
Length = 164
Score = 225 bits (574), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 109/167 (65%), Positives = 124/167 (74%), Gaps = 7/167 (4%)
Query: 3 NPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHR 62
NP VFFD+ V G+P GR+ ELFAD P+TAENFRAL TGEKG G YKGS FHR
Sbjct: 2 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHR 54
Query: 63 VIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFIS 122
+IPGFMCQ +SIYG KF DENF+ KHTGPGILSMANAGP TNGSQFFI
Sbjct: 55 IIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFIC 114
Query: 123 AGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKKPVVIADCG 169
KTEWLDGKHV FG+V EGMN+V+A+E+ GSR+G+T K + IADCG
Sbjct: 115 TAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCG 161
>pdb|2HQJ|A Chain A, Cyclophilin From Leishmania Major
Length = 183
Score = 225 bits (573), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 107/172 (62%), Positives = 129/172 (75%), Gaps = 3/172 (1%)
Query: 1 MANPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSF 60
M NPKVFFD+++ + AGRIVMEL+AD P+TAENFRALCTGEKG G+SGKPLHYK S F
Sbjct: 5 MTNPKVFFDISIDNKAAGRIVMELYADTVPKTAENFRALCTGEKGKGRSGKPLHYKSSVF 64
Query: 61 HRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKK---HTGPGILSMANAGPGTNGS 117
HRVIP FM Q ESIYG+ F DE+F K HTG G LSMANAGP TNGS
Sbjct: 65 HRVIPNFMIQGGDFTRGNGTGGESIYGTTFRDESFSGKAGRHTGLGCLSMANAGPNTNGS 124
Query: 118 QFFISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKKPVVIADCG 169
QFFI T WLDGKHV FG+V++G++VVK +E++GS SG+T+ +V++DCG
Sbjct: 125 QFFICTAATPWLDGKHVVFGRVIDGLDVVKKVERLGSSSGKTRSRIVVSDCG 176
>pdb|2X2A|A Chain A, Free Acetyl-Cypa Trigonal Form
pdb|2X2A|B Chain B, Free Acetyl-Cypa Trigonal Form
Length = 165
Score = 224 bits (570), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 108/169 (63%), Positives = 124/169 (73%), Gaps = 7/169 (4%)
Query: 1 MANPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSF 60
M NP VFFD+ V G+P GR+ ELFAD P+TAENFRAL TGEKG G YKGS F
Sbjct: 1 MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCF 53
Query: 61 HRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFF 120
HR+IPGFMCQ +SIYG KF DENF+ KHTGPGILSMANAGP TNGSQFF
Sbjct: 54 HRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFF 113
Query: 121 ISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKKPVVIADCG 169
I KT+WLDG HV FG+V EGMN+V+A+E+ GSR+G+T K + IADCG
Sbjct: 114 ICTAKTKWLDGXHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCG 162
>pdb|2Z6W|A Chain A, Crystal Structure Of Human Cyclophilin D In Complex With
Cyclosporin A
pdb|2Z6W|B Chain B, Crystal Structure Of Human Cyclophilin D In Complex With
Cyclosporin A
Length = 165
Score = 224 bits (570), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 108/169 (63%), Positives = 123/169 (72%), Gaps = 7/169 (4%)
Query: 1 MANPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSF 60
M NP V+ D+ G+P GR+V+EL ADV P+TAENFRALCTGEKG G YKGS+F
Sbjct: 1 MGNPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFG-------YKGSTF 53
Query: 61 HRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFF 120
HRVIP FMCQ +SIYGS+F DENF KH GPG+LSMANAGP TNGSQFF
Sbjct: 54 HRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFF 113
Query: 121 ISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKKPVVIADCG 169
I KT+WLDGKHV FG V+EGM+VVK IE GS+SGRT K +VI DCG
Sbjct: 114 ICTIKTDWLDGKHVVFGHVIEGMDVVKKIESFGSKSGRTSKKIVITDCG 162
>pdb|2X83|B Chain B, Evolutionary Basis Of Hiv Restriction By The
Antiretroviral Trimcyp
pdb|2X83|D Chain D, Evolutionary Basis Of Hiv Restriction By The
Antiretroviral Trimcyp
Length = 163
Score = 223 bits (569), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 108/167 (64%), Positives = 124/167 (74%), Gaps = 7/167 (4%)
Query: 3 NPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHR 62
NP VFFD+ V G+P GR+ ELFAD P+TAENFRAL TGEKG G YKGS FHR
Sbjct: 2 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHR 54
Query: 63 VIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFIS 122
+IPGFMCQ +SIYG KF DENF+ KHTGPGILSMANAGP TNGSQFFI
Sbjct: 55 IIPGFMCQGGDFTHHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFIC 114
Query: 123 AGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKKPVVIADCG 169
KTEWLDGKHV FG+V EGMN+V+A+++ GSR+G+T K + IADCG
Sbjct: 115 TAKTEWLDGKHVVFGKVKEGMNIVEAMKRFGSRNGKTSKKITIADCG 161
>pdb|2ALF|A Chain A, Crystal Structure Of Human Cypa Mutant K131a
Length = 164
Score = 223 bits (567), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 108/167 (64%), Positives = 123/167 (73%), Gaps = 7/167 (4%)
Query: 3 NPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHR 62
NP VFFD+ V G+P GR+ ELFAD P+TAENFRAL TGEKG G YKGS FHR
Sbjct: 2 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHR 54
Query: 63 VIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFIS 122
+IPGFMCQ +SIYG KF DENF+ KHTGPGILSMANAGP TNGSQFFI
Sbjct: 55 IIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFIC 114
Query: 123 AGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKKPVVIADCG 169
KT+WLDGKHV FG V EGMN+V+A+E+ GSR+G+T K + IADCG
Sbjct: 115 TAKTKWLDGKHVVFGAVKEGMNIVEAMERFGSRNGKTSKKITIADCG 161
>pdb|2X25|B Chain B, Free Acetyl-Cypa Orthorhombic Form
Length = 169
Score = 222 bits (565), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 107/167 (64%), Positives = 123/167 (73%), Gaps = 7/167 (4%)
Query: 3 NPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHR 62
NP VFFD+ V G+P GR+ ELFAD P+TAENFRAL TGEKG G YKGS FHR
Sbjct: 7 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHR 59
Query: 63 VIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFIS 122
+IPGFMCQ +SIYG KF DENF+ KHTGPGILSMANAGP TNGSQFFI
Sbjct: 60 IIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFIC 119
Query: 123 AGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKKPVVIADCG 169
KT+WLDG HV FG+V EGMN+V+A+E+ GSR+G+T K + IADCG
Sbjct: 120 TAKTKWLDGXHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCG 166
>pdb|2BIT|X Chain X, Crystal Structure Of Human Cyclophilin D At 1.7 A
Resolution
pdb|2BIU|X Chain X, Crystal Structure Of Human Cyclophilin D At 1.7 A
Resolution, Dmso Complex
Length = 165
Score = 222 bits (565), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 107/167 (64%), Positives = 122/167 (73%), Gaps = 7/167 (4%)
Query: 3 NPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHR 62
NP V+ D+ G+P GR+V+EL ADV P+TAENFRALCTGEKG G YKGS+FHR
Sbjct: 3 NPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFG-------YKGSTFHR 55
Query: 63 VIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFIS 122
VIP FMCQ +SIYGS+F DENF KH GPG+LSMANAGP TNGSQFFI
Sbjct: 56 VIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFIC 115
Query: 123 AGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKKPVVIADCG 169
KT+WLDGKHV FG V+EGM+VVK IE GS+SGRT K +VI DCG
Sbjct: 116 TIKTDWLDGKHVVFGHVIEGMDVVKKIESFGSKSGRTSKKIVITDCG 162
>pdb|3R49|A Chain A, Human Cyclophilin D Complexed With Quinolin-8-Amine
pdb|3R4G|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R54|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R56|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R57|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R59|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RCF|A Chain A, Human Cyclophilin D Complexed With N-[(4-Aminophenyl)
Sulfonyl]benzamide
pdb|3RCG|A Chain A, Human Cyclophilin D Complexed With Dimethylformamide
pdb|3RCI|X Chain X, Human Cyclophilin D Complexed With
5-Methyl-1,2-Oxazol-3-Amine
pdb|3RCK|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RCL|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RD9|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RDA|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RDB|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RDC|A Chain A, Human Cyclophilin D Complexed With An Inhibitor
Length = 166
Score = 222 bits (565), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 107/167 (64%), Positives = 122/167 (73%), Gaps = 7/167 (4%)
Query: 3 NPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHR 62
NP V+ D+ G+P GR+V+EL ADV P+TAENFRALCTGEKG G YKGS+FHR
Sbjct: 4 NPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFG-------YKGSTFHR 56
Query: 63 VIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFIS 122
VIP FMCQ +SIYGS+F DENF KH GPG+LSMANAGP TNGSQFFI
Sbjct: 57 VIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFIC 116
Query: 123 AGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKKPVVIADCG 169
KT+WLDGKHV FG V+EGM+VVK IE GS+SGRT K +VI DCG
Sbjct: 117 TIKTDWLDGKHVVFGHVIEGMDVVKKIESFGSKSGRTSKKIVITDCG 163
>pdb|3QYU|A Chain A, Crystal Structure Of Human Cyclophilin D At 1.54 A
Resolution At Room Temperature
Length = 164
Score = 222 bits (565), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 107/167 (64%), Positives = 122/167 (73%), Gaps = 7/167 (4%)
Query: 3 NPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHR 62
NP V+ D+ G+P GR+V+EL ADV P+TAENFRALCTGEKG G YKGS+FHR
Sbjct: 2 NPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFG-------YKGSTFHR 54
Query: 63 VIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFIS 122
VIP FMCQ +SIYGS+F DENF KH GPG+LSMANAGP TNGSQFFI
Sbjct: 55 VIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFIC 114
Query: 123 AGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKKPVVIADCG 169
KT+WLDGKHV FG V+EGM+VVK IE GS+SGRT K +VI DCG
Sbjct: 115 TIKTDWLDGKHVVFGHVIEGMDVVKKIESFGSKSGRTSKKIVITDCG 161
>pdb|1AWS|A Chain A, Secypa Complexed With Hagpia (Pseudo-Symmetric Monomer)
pdb|1AWT|A Chain A, Secypa Complexed With Hagpia
pdb|1AWT|B Chain B, Secypa Complexed With Hagpia
pdb|1AWT|C Chain C, Secypa Complexed With Hagpia
pdb|1AWT|D Chain D, Secypa Complexed With Hagpia
pdb|1AWT|E Chain E, Secypa Complexed With Hagpia
pdb|1AWT|F Chain F, Secypa Complexed With Hagpia
Length = 164
Score = 217 bits (553), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 106/167 (63%), Positives = 120/167 (71%), Gaps = 7/167 (4%)
Query: 3 NPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHR 62
NP VFFD+ V G+P GR+ ELFAD P+TAENFRAL TGEKG G YKGS FHR
Sbjct: 2 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHR 54
Query: 63 VIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFIS 122
+IPGF CQ +SIYG KF DENF+ KHTGPGILS ANAGP TNGSQFFI
Sbjct: 55 IIPGFXCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSXANAGPNTNGSQFFIC 114
Query: 123 AGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKKPVVIADCG 169
KTEWLDGKHV FG+V EG N+V+A E+ GSR+G+T K + IADCG
Sbjct: 115 TAKTEWLDGKHVVFGKVKEGXNIVEAXERFGSRNGKTSKKITIADCG 161
>pdb|1QNG|A Chain A, Plasmodium Falciparum Cyclophilin Complexed With
Cyclosporin A
Length = 170
Score = 214 bits (545), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 103/165 (62%), Positives = 119/165 (72%), Gaps = 1/165 (0%)
Query: 5 KVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVI 64
KVFFD+++ AGRI+ ELF+D+TPRT ENFRALCTGEK IG GK LHYK S FHR+I
Sbjct: 5 KVFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEK-IGSRGKNLHYKNSIFHRII 63
Query: 65 PGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFISAG 124
P FMCQ ESIYG F DENF KH PG+LSMANAGP TN SQFFI+
Sbjct: 64 PQFMCQGGDITNGNGSGGESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFFITLV 123
Query: 125 KTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKKPVVIADCG 169
WLDGKHV FG+V+EGMNVV+ +EK G++SG K+ VVI DCG
Sbjct: 124 PCPWLDGKHVVFGKVIEGMNVVREMEKEGAKSGYVKRSVVITDCG 168
>pdb|2PLU|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_4120
pdb|2POY|A Chain A, Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl
Cis-Trans Isomerase Cgd2_4120 In Complex With
Cyclosporin A
pdb|2POY|B Chain B, Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl
Cis-Trans Isomerase Cgd2_4120 In Complex With
Cyclosporin A
pdb|2POY|C Chain C, Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl
Cis-Trans Isomerase Cgd2_4120 In Complex With
Cyclosporin A
Length = 186
Score = 213 bits (543), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 106/168 (63%), Positives = 122/168 (72%)
Query: 3 NPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHR 62
NP V+FD+++G PAGRI MELFAD P TAENFRALCTGEKG+G+SGKPL Y GS FHR
Sbjct: 19 NPVVYFDISIGQTPAGRITMELFADKVPITAENFRALCTGEKGMGQSGKPLCYTGSFFHR 78
Query: 63 VIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFIS 122
+IP FM Q ESIYGSKF DENFV H P +LSMANAGP TNGSQFFI+
Sbjct: 79 IIPQFMIQGGDFTRGDGTGGESIYGSKFRDENFVYTHDAPFLLSMANAGPNTNGSQFFIT 138
Query: 123 AGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKKPVVIADCGI 170
WLDGKHV FG+V+EGM VVK+IEK GS++G+ K V I G+
Sbjct: 139 TVPCPWLDGKHVVFGKVLEGMEVVKSIEKCGSQNGKPTKSVCITASGV 186
>pdb|1QNH|A Chain A, Plasmodium Falciparum Cyclophilin (Double Mutant)
Complexed With Cyclosporin A
pdb|1QNH|B Chain B, Plasmodium Falciparum Cyclophilin (Double Mutant)
Complexed With Cyclosporin A
Length = 170
Score = 212 bits (540), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 102/167 (61%), Positives = 119/167 (71%), Gaps = 1/167 (0%)
Query: 5 KVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVI 64
KVFFD+++ AGRI+ ELF+D+TPRT ENFRALCTGEK IG GK LHYK S FHR+I
Sbjct: 5 KVFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEK-IGSRGKNLHYKNSIFHRII 63
Query: 65 PGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFISAG 124
P FMCQ ESIYG F DENF KH PG+LSMANAGP TN SQF I+
Sbjct: 64 PQFMCQGGDITNGNGSGGESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFLITLV 123
Query: 125 KTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKKPVVIADCGIY 171
WLDGKHV FG+V+EGMNVV+ +EK G++SG K+ VVI DCG +
Sbjct: 124 PCPWLDGKHVVFGKVIEGMNVVREMEKEGAKSGYVKRSVVITDCGEW 170
>pdb|1ZMF|A Chain A, C Domain Of Human Cyclophilin-33(Hcyp33)
Length = 165
Score = 211 bits (537), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 99/170 (58%), Positives = 124/170 (72%), Gaps = 7/170 (4%)
Query: 2 ANPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFH 61
+NP+V+ D+ +G +PAGRI M L +DV P TAENFR LCT EKG G +KGSSFH
Sbjct: 2 SNPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFG-------FKGSSFH 54
Query: 62 RVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFI 121
R+IP FMCQ +SIYG KF DENF+ KHTGPG+LSMAN+GP TNGSQFF+
Sbjct: 55 RIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFL 114
Query: 122 SAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKKPVVIADCGIY 171
+ KT+WLDGKHV FG+V EG++V++ IE GS+ G+ K+ V+IADCG Y
Sbjct: 115 TCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGKPKQKVIIADCGEY 164
>pdb|2R99|A Chain A, Crystal Structure Of Cyclophilin Abh-Like Domain Of Human
Peptidylprolyl Isomerase E Isoform 1
Length = 173
Score = 211 bits (537), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 99/170 (58%), Positives = 124/170 (72%), Gaps = 7/170 (4%)
Query: 2 ANPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFH 61
+NP+V+ D+ +G +PAGRI M L +DV P TAENFR LCT EKG G +KGSSFH
Sbjct: 10 SNPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFG-------FKGSSFH 62
Query: 62 RVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFI 121
R+IP FMCQ +SIYG KF DENF+ KHTGPG+LSMAN+GP TNGSQFF+
Sbjct: 63 RIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFL 122
Query: 122 SAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKKPVVIADCGIY 171
+ KT+WLDGKHV FG+V EG++V++ IE GS+ G+ K+ V+IADCG Y
Sbjct: 123 TCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGKPKQKVIIADCGEY 172
>pdb|3UCH|A Chain A, Crystal Structure Of A Hypotherical Peptidyl-Prolyl
Cis-Trans Isomerase E (Ppie) From Homo Sapiens At 2.50 A
Resolution
Length = 174
Score = 203 bits (516), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 96/170 (56%), Positives = 121/170 (71%), Gaps = 7/170 (4%)
Query: 2 ANPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFH 61
+NP+V+ D+ +G +PAGRI L +DV P TAENFR LCT EKG G +KGSSFH
Sbjct: 11 SNPQVYXDIKIGNKPAGRIQXLLRSDVVPXTAENFRCLCTHEKGFG-------FKGSSFH 63
Query: 62 RVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFI 121
R+IP F CQ +SIYG KF DENF+ KHTGPG+LS AN+GP TNGSQFF+
Sbjct: 64 RIIPQFXCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSXANSGPNTNGSQFFL 123
Query: 122 SAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKKPVVIADCGIY 171
+ KT+WLDGKHV FG+V EG++V++ IE GS+ G+ K+ V+IADCG Y
Sbjct: 124 TCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGKPKQKVIIADCGEY 173
>pdb|2CK1|A Chain A, The Structure Of Oxidised Cyclophilin A From S. Mansoni
pdb|2CMT|A Chain A, The Structure Of Reduced Cyclophilin A From S. Mansoni
Length = 172
Score = 202 bits (514), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 98/166 (59%), Positives = 118/166 (71%), Gaps = 7/166 (4%)
Query: 4 PKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRV 63
P+VFFD+ +G AGRIVMEL +D+ PRTAENFRALCTGE+G G Y FHRV
Sbjct: 11 PRVFFDIRIGNGDAGRIVMELRSDIVPRTAENFRALCTGERGFG-------YHNCCFHRV 63
Query: 64 IPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFISA 123
IP FMCQ +SIYG KF DENF +H G G+LSMAN+GP TNGSQFFI
Sbjct: 64 IPQFMCQGGDFVKGDGTGGKSIYGRKFDDENFQLRHEGFGVLSMANSGPNTNGSQFFICT 123
Query: 124 GKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKKPVVIADCG 169
K +WLDGKHV FG+VV+G NVVK +E +GS+SG+ K+PV+I+ CG
Sbjct: 124 TKCDWLDGKHVVFGRVVDGQNVVKKMESVGSKSGKVKEPVIISRCG 169
>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form
pdb|1IIP|A Chain A, Bovine Cyclophilin 40, Tetragonal Form
Length = 370
Score = 199 bits (505), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 99/169 (58%), Positives = 119/169 (70%), Gaps = 1/169 (0%)
Query: 2 ANPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIG-KSGKPLHYKGSSF 60
+NP+VFFD+ +GG+ GRIV+ELFAD+ P+TAENFRALCTGEKGIG +GKPLH+KG F
Sbjct: 14 SNPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPF 73
Query: 61 HRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFF 120
HR+I FM Q ESIYG KF DENF KH G+LSMANAG TNGSQFF
Sbjct: 74 HRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDKEGLLSMANAGSNTNGSQFF 133
Query: 121 ISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKKPVVIADCG 169
I+ T LDGKHV FGQV++GM V K +E + + + K VIA+CG
Sbjct: 134 ITTVPTPHLDGKHVVFGQVIKGMGVAKILENVEVKGEKPAKLCVIAECG 182
>pdb|2CFE|A Chain A, The 1.5 A Crystal Structure Of The Malassezia Sympodialis
Mala S 6 Allergen, A Member Of The Cyclophilin Pan-
Allergen Family
Length = 162
Score = 193 bits (491), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 99/166 (59%), Positives = 113/166 (68%), Gaps = 7/166 (4%)
Query: 5 KVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVI 64
VFFD+T G P G I +LF DV P+TA NFRALCTGEKG G Y GS FHRVI
Sbjct: 3 NVFFDITKNGAPLGTIKFKLFDDVVPKTAANFRALCTGEKGFG-------YAGSHFHRVI 55
Query: 65 PGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFISAG 124
P FM Q +SIYG+KFADENF KH PG+LSMANAGP TNGSQFFI+
Sbjct: 56 PDFMLQGGDFTAGNGTGGKSIYGAKFADENFQLKHNKPGLLSMANAGPNTNGSQFFITTV 115
Query: 125 KTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKKPVVIADCGI 170
T WLDGKHV FG+V++GMNVVKAIE GS SG+ + + IA CG+
Sbjct: 116 VTSWLDGKHVVFGEVIDGMNVVKAIEAEGSGSGKPRSRIEIAKCGV 161
>pdb|1IST|A Chain A, Crystal Structure Of Yeast Cyclophilin A, Cpr1
pdb|1IST|B Chain B, Crystal Structure Of Yeast Cyclophilin A, Cpr1
pdb|1VDN|A Chain A, Crystal Structure Of Yeast Cyclophilin A Complexed With
Ace-Ala-Ala- Pro-Ala-7-Amino-4-Methylcoumarin
Length = 162
Score = 188 bits (477), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 93/165 (56%), Positives = 112/165 (67%), Gaps = 7/165 (4%)
Query: 5 KVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVI 64
+V+FD+ GQP GR+V +L+ D+ P+TAENFRALCTGEKG G Y GS FHRVI
Sbjct: 3 QVYFDVEADGQPIGRVVFKLYNDIVPKTAENFRALCTGEKGFG-------YAGSPFHRVI 55
Query: 65 PGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFISAG 124
P FM Q +SIYG KF DENF K H PG+LSMANAGP TNGSQFFI+
Sbjct: 56 PDFMLQGGDFTAGNGTGGKSIYGGKFPDENFKKHHDRPGLLSMANAGPNTNGSQFFITTV 115
Query: 125 KTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKKPVVIADCG 169
WLDGKHV FG+VV+G ++VK +E +GS SG TK +V+A G
Sbjct: 116 PCPWLDGKHVVFGEVVDGYDIVKKVESLGSPSGATKARIVVAKSG 160
>pdb|4I9Y|A Chain A, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|B Chain B, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|C Chain C, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|D Chain D, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|E Chain E, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|F Chain F, Structure Of The C-terminal Domain Of Nup358
Length = 167
Score = 185 bits (469), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 94/169 (55%), Positives = 109/169 (64%), Gaps = 7/169 (4%)
Query: 1 MANPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSF 60
M NP VFFD+ G+P GRI MELF+++ PRTAENFRALCTGEKG G +K S F
Sbjct: 4 MTNPVVFFDVCADGEPLGRITMELFSNIVPRTAENFRALCTGEKGFG-------FKNSIF 56
Query: 61 HRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFF 120
HRVIP F+CQ +SIYG KF DENF KHTGPG+LSMAN G TN SQF
Sbjct: 57 HRVIPDFVCQGGDITKHDGTGGQSIYGDKFEDENFDVKHTGPGLLSMANQGQNTNNSQFV 116
Query: 121 ISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKKPVVIADCG 169
I+ K E LD KHV FG V +GM+ VK IE GS G + + I +CG
Sbjct: 117 ITLKKAEHLDFKHVVFGFVKDGMDTVKKIESFGSPKGSVCRRITITECG 165
>pdb|1QOI|A Chain A, U4U6 SNRNP-Specific Cyclophilin Snucyp-20
pdb|1MZW|A Chain A, Crystal Structure Of A U4U6 SNRNP COMPLEX BETWEEN HUMAN
Spliceosomal Cyclophilin H And A U4U6-60k Peptide
Length = 177
Score = 183 bits (464), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 90/169 (53%), Positives = 116/169 (68%), Gaps = 3/169 (1%)
Query: 2 ANPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFH 61
NP VFFD+++GGQ GR+ +ELFADV P+TAENFR CTGE K G P+ YKGS+FH
Sbjct: 9 VNPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGE--FRKDGVPIGYKGSTFH 66
Query: 62 RVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFI 121
RVI FM Q SIY FADENF +H+ PG+LSMAN+GP TNG QFFI
Sbjct: 67 RVIKDFMIQGGDFVNGDGTGVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFFI 126
Query: 122 SAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGS-RSGRTKKPVVIADCG 169
+ K +WLDGKHV FG++++G+ V++ IE + + + + K PVVI+ CG
Sbjct: 127 TCSKCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPKLPVVISQCG 175
>pdb|3O7T|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa
Length = 164
Score = 180 bits (456), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 90/169 (53%), Positives = 113/169 (66%), Gaps = 9/169 (5%)
Query: 1 MANPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSF 60
MAN VFF++++ +P GRIV +L+ + P+TA+NFR L TG+ G G YK S F
Sbjct: 3 MAN--VFFNISINDKPEGRIVFKLYDEAVPKTAKNFRELATGQHGFG-------YKDSIF 53
Query: 61 HRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFF 120
HRVIP FM Q +SIYG KFADENF KHT PG+LSMANAG TNGSQFF
Sbjct: 54 HRVIPQFMLQGGDFTRHNGTGGKSIYGEKFADENFQVKHTKPGLLSMANAGANTNGSQFF 113
Query: 121 ISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKKPVVIADCG 169
I+ T WLDGKHV FG+V+EG+++V+ +E GS SG+T + I DCG
Sbjct: 114 ITTVPTSWLDGKHVVFGEVIEGLDIVRKVEGKGSASGKTNATIKITDCG 162
>pdb|3PMP|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa In Complex With Cyclosporin A
pdb|3PMP|B Chain B, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa In Complex With Cyclosporin A
Length = 164
Score = 180 bits (456), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 90/169 (53%), Positives = 113/169 (66%), Gaps = 9/169 (5%)
Query: 1 MANPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSF 60
MAN VFF++++ +P GRIV +L+ + P+TA+NFR L TG+ G G YK S F
Sbjct: 2 MAN--VFFNISINDKPEGRIVFKLYDEAVPKTAKNFRELATGQHGFG-------YKDSIF 52
Query: 61 HRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFF 120
HRVIP FM Q +SIYG KFADENF KHT PG+LSMANAG TNGSQFF
Sbjct: 53 HRVIPQFMLQGGDFTRHNGTGGKSIYGEKFADENFQVKHTKPGLLSMANAGANTNGSQFF 112
Query: 121 ISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKKPVVIADCG 169
I+ T WLDGKHV FG+V+EG+++V+ +E GS SG+T + I DCG
Sbjct: 113 ITTVPTSWLDGKHVVFGEVIEGLDIVRKVEGKGSASGKTNATIKITDCG 161
>pdb|3K2C|A Chain A, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|B Chain B, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|C Chain C, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|D Chain D, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
Length = 193
Score = 178 bits (451), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 94/171 (54%), Positives = 111/171 (64%), Gaps = 9/171 (5%)
Query: 2 ANPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFH 61
A+ V+FD+ + GRIVM+L D+ P+TA+NFR LC KG G YKGS+FH
Sbjct: 26 ASGNVYFDVYANEESLGRIVMKLEDDIVPKTAKNFRTLCERPKGEG-------YKGSTFH 78
Query: 62 RVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFI 121
R+IPGFM Q SIYG KF DENF KHT GILSMAN G TNGSQFFI
Sbjct: 79 RIIPGFMVQGGDYTAHNGTGGRSIYGEKFPDENFELKHTKEGILSMANCGAHTNGSQFFI 138
Query: 122 SAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKK--PVVIADCGI 170
+ GKT+WLD KHV FG+VVEGM+VV I K GS SG+ KK + I DCG+
Sbjct: 139 TLGKTQWLDEKHVVFGEVVEGMDVVHKIAKYGSESGQVKKGYRIEIRDCGV 189
>pdb|2GW2|A Chain A, Crystal Structure Of The Peptidyl-Prolyl Isomerase Domain
Of Human Cyclophilin G
Length = 198
Score = 169 bits (428), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 90/173 (52%), Positives = 105/173 (60%), Gaps = 6/173 (3%)
Query: 1 MANPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSG-KPLHYKGSS 59
+ P+ FFD+ + QPAGR+V ELF+DV P+T ENFR LCTGEKG GKS KPLHYK
Sbjct: 24 VQRPRCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCL 83
Query: 60 FHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQF 119
FHRV+ FM Q ESIYG F DE+F KH +LSMAN G TNGSQF
Sbjct: 84 FHRVVKDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNAAFLLSMANRGKDTNGSQF 143
Query: 120 FISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKKP---VVIADCG 169
FI+ T LDG HV FGQV+ G VV+ IE ++ KP V I CG
Sbjct: 144 FITTKPTPHLDGHHVVFGQVISGQEVVREIEN--QKTDAASKPFAEVRILSCG 194
>pdb|2WFJ|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain
Of Human Cyclophilin G In Complex With Cyclosporin A
Length = 179
Score = 169 bits (428), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 90/173 (52%), Positives = 105/173 (60%), Gaps = 6/173 (3%)
Query: 1 MANPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSG-KPLHYKGSS 59
+ P+ FFD+ + QPAGR+V ELF+DV P+T ENFR LCTGEKG GKS KPLHYK
Sbjct: 7 VQRPRCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCL 66
Query: 60 FHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQF 119
FHRV+ FM Q ESIYG F DE+F KH +LSMAN G TNGSQF
Sbjct: 67 FHRVVKDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGSQF 126
Query: 120 FISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKKP---VVIADCG 169
FI+ T LDG HV FGQV+ G VV+ IE ++ KP V I CG
Sbjct: 127 FITTKPTPHLDGHHVVFGQVISGQEVVREIENQ--KTDAASKPFAEVRILSCG 177
>pdb|2WFI|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain
Of Human Cyclophilin G
Length = 179
Score = 169 bits (427), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 90/173 (52%), Positives = 105/173 (60%), Gaps = 6/173 (3%)
Query: 1 MANPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSG-KPLHYKGSS 59
+ P+ FFD+ + QPAGR+V ELF+DV P+T ENFR LCTGEKG GKS KPLHYK
Sbjct: 7 VQRPRCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSXL 66
Query: 60 FHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQF 119
FHRV+ FM Q ESIYG F DE+F KH +LSMAN G TNGSQF
Sbjct: 67 FHRVVKDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGSQF 126
Query: 120 FISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKKP---VVIADCG 169
FI+ T LDG HV FGQV+ G VV+ IE ++ KP V I CG
Sbjct: 127 FITTKPTPHLDGHHVVFGQVISGQEVVREIENQ--KTDAASKPFAEVRILSCG 177
>pdb|1C5F|A Chain A, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|C Chain C, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|E Chain E, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|G Chain G, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|I Chain I, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|K Chain K, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|M Chain M, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|O Chain O, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1A33|A Chain A, Peptidylprolyl Isomerase, Cyclophilin-Like Domain From
Brugia Malayi
pdb|1A58|A Chain A, Cyclophilin From Brugia Malayi
Length = 177
Score = 169 bits (427), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 90/167 (53%), Positives = 104/167 (62%), Gaps = 2/167 (1%)
Query: 5 KVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGK-SGKPLHYKGSSFHRV 63
+VF D+T+ G AGRIVMEL+ D+ PRT NF LCTG G GK SGKPLHYKGS+FHRV
Sbjct: 8 RVFLDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRV 67
Query: 64 IPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFISA 123
I FM Q ESIYG F DE FV KH P ++SMAN GP TNGSQFFI+
Sbjct: 68 IKNFMIQGGDFTKGDGTGGESIYGGMFDDEEFVMKHDEPFVVSMANKGPNTNGSQFFITT 127
Query: 124 GKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRS-GRTKKPVVIADCG 169
L+ HV FG+VV G VV IE + + S R VVI +CG
Sbjct: 128 TPAPHLNNIHVVFGKVVSGQEVVTKIEYLKTNSKNRPLADVVILNCG 174
>pdb|4FRV|A Chain A, Crystal Structure Of Mutated Cyclophilin B That Causes
Hyperelastosis Cutis In The American Quarter Horse
Length = 185
Score = 166 bits (420), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 89/167 (53%), Positives = 106/167 (63%), Gaps = 10/167 (5%)
Query: 5 KVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVI 64
KV+FD+ +G + GR+V+ LF P+T +NF AL TGEKG G YK S FHRVI
Sbjct: 14 KVYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFG-------YKDSKFHRVI 66
Query: 65 PGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFISAG 124
FM Q +SIYG +F DENF KH GPG +SMANAG TNGSQFFI+
Sbjct: 67 KDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTV 126
Query: 125 KTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTK--KPVVIADCG 169
KT WLDGKHV FG+V+EGM VV+ +E + GR K K V IADCG
Sbjct: 127 KTAWLDGKHVVFGKVLEGMEVVRKVETTKT-DGRDKPLKDVTIADCG 172
>pdb|4FRU|A Chain A, Crystal Structure Of Horse Wild-Type Cyclophilin B
Length = 185
Score = 166 bits (420), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 89/167 (53%), Positives = 106/167 (63%), Gaps = 10/167 (5%)
Query: 5 KVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVI 64
KV+FD+ +G + GR+V+ LF P+T +NF AL TGEKG G YK S FHRVI
Sbjct: 14 KVYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFG-------YKDSKFHRVI 66
Query: 65 PGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFISAG 124
FM Q +SIYG +F DENF KH GPG +SMANAG TNGSQFFI+
Sbjct: 67 KDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTV 126
Query: 125 KTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTK--KPVVIADCG 169
KT WLDGKHV FG+V+EGM VV+ +E + GR K K V IADCG
Sbjct: 127 KTAWLDGKHVVFGKVLEGMEVVRKVETTKT-DGRDKPLKDVTIADCG 172
>pdb|1CYN|A Chain A, Cyclophilin B Complexed With
[d-(Cholinylester)ser8]-Cyclosporin
Length = 178
Score = 166 bits (419), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 86/166 (51%), Positives = 105/166 (63%), Gaps = 8/166 (4%)
Query: 5 KVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVI 64
KV+FD+ +G + GR++ LF P+T +NF AL TGEKG G YK S FHRVI
Sbjct: 7 KVYFDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGEKGFG-------YKNSKFHRVI 59
Query: 65 PGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFISAG 124
FM Q +SIYG +F DENF KH GPG +SMANAG TNGSQFFI+
Sbjct: 60 KDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTV 119
Query: 125 KTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRS-GRTKKPVVIADCG 169
KT WLDGKHV FG+V+EGM VV+ +E + S + K V+IADCG
Sbjct: 120 KTAWLDGKHVVFGKVLEGMEVVRKVESTKTDSRDKPLKDVIIADCG 165
>pdb|3ICH|A Chain A, Crystal Structure Of Cyclophilin B At 1.2 A Resolution
pdb|3ICI|A Chain A, Crystal Structure Of Cyclophilin B In Complex With
Calmegin Fragment
pdb|3ICI|B Chain B, Crystal Structure Of Cyclophilin B In Complex With
Calmegin Fragment
Length = 188
Score = 165 bits (418), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 88/167 (52%), Positives = 106/167 (63%), Gaps = 10/167 (5%)
Query: 5 KVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVI 64
KV+FD+ +G + GR++ LF P+T +NF AL TGEKG G YK S FHRVI
Sbjct: 17 KVYFDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGEKGFG-------YKNSKFHRVI 69
Query: 65 PGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFISAG 124
FM Q +SIYG +F DENF KH GPG +SMANAG TNGSQFFI+
Sbjct: 70 KDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTV 129
Query: 125 KTEWLDGKHVAFGQVVEGMNVVKAIE--KMGSRSGRTKKPVVIADCG 169
KT WLDGKHV FG+V+EGM VV+ +E K SR + K V+IADCG
Sbjct: 130 KTAWLDGKHVVFGKVLEGMEVVRKVESTKTDSRD-KPLKDVIIADCG 175
>pdb|1XO7|A Chain A, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XO7|B Chain B, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XO7|C Chain C, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XO7|D Chain D, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XQ7|A Chain A, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin A
pdb|1XQ7|B Chain B, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin A
pdb|1XQ7|C Chain C, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin A
Length = 166
Score = 159 bits (402), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 83/167 (49%), Positives = 108/167 (64%), Gaps = 9/167 (5%)
Query: 5 KVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVI 64
KV+FD+T+G +P GR+V+ LF + P+T ENF+ L +GE G G YKGS FHRVI
Sbjct: 7 KVYFDITIGDEPVGRVVIGLFGNDVPKTVENFKQLASGENGFG-------YKGSIFHRVI 59
Query: 65 PGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFISAG 124
FM Q +SIYG++F DEN KH G +SMANAGP +NGSQFF++
Sbjct: 60 RNFMIQGGDFTNFDGTGGKSIYGTRFDDENLKIKHF-VGAVSMANAGPNSNGSQFFVTTA 118
Query: 125 KTEWLDGKHVAFGQVVEGMNVVKAIEKMGS-RSGRTKKPVVIADCGI 170
T WLDG+HV FG+VVEGM+VVK +E + + + KK V I DCG+
Sbjct: 119 PTPWLDGRHVVFGKVVEGMDVVKKVENTKTGLNDKPKKAVKINDCGV 165
>pdb|1H0P|A Chain A, Cyclophilin_5 From C. Elegans
Length = 182
Score = 159 bits (401), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 87/166 (52%), Positives = 103/166 (62%), Gaps = 8/166 (4%)
Query: 5 KVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVI 64
+V+FDM +GG+P GRIV+ LF P+TA NF L KG G Y GS FHRVI
Sbjct: 8 RVYFDMEIGGKPIGRIVIGLFGKTVPKTATNFIELAKKPKGEG-------YPGSKFHRVI 60
Query: 65 PGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFISAG 124
FM Q SIYG KFADENF KH G G LSMANAG TNGSQFFI+
Sbjct: 61 ADFMIQGGDFTRGDGTGGRSIYGEKFADENFKLKHYGAGWLSMANAGADTNGSQFFITTV 120
Query: 125 KTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSG-RTKKPVVIADCG 169
KT WLDG+HV FG+++EGM+VV+ IE+ G R K+ V+IA G
Sbjct: 121 KTPWLDGRHVVFGKILEGMDVVRKIEQTEKLPGDRPKQDVIIAASG 166
>pdb|2RMC|A Chain A, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|C Chain C, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|E Chain E, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|G Chain G, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
Length = 182
Score = 157 bits (396), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 87/166 (52%), Positives = 103/166 (62%), Gaps = 11/166 (6%)
Query: 5 KVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVI 64
KVFFD+ +G + GRIV+ LF +V P+T ENF AL TGEKG G YKGS FHRVI
Sbjct: 9 KVFFDVRIGDKDVGRIVIGLFGNVVPKTVENFVALATGEKGYG-------YKGSIFHRVI 61
Query: 65 PGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFISAG 124
FM Q SIYG F DENF KH G G +SMANAGP TNGSQFFI+
Sbjct: 62 KDFMIQGGDFTARDGTGGMSIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFITLT 121
Query: 125 KTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKKPVVIADCGI 170
K WLDGKHV FG+V++GM VV +IE + + G + + DC I
Sbjct: 122 KPTWLDGKHVVFGKVLDGMTVVHSIE-LQATDGHDRP---LTDCTI 163
>pdb|2ESL|A Chain A, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|B Chain B, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|C Chain C, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|D Chain D, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|E Chain E, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|F Chain F, Human Cyclophilin C In Complex With Cyclosporin A
Length = 190
Score = 156 bits (395), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 83/146 (56%), Positives = 94/146 (64%), Gaps = 7/146 (4%)
Query: 5 KVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVI 64
KVFFD+ +G + GRIV+ LF V P+T ENF AL TGEKG G YKGS FHRVI
Sbjct: 17 KVFFDVRIGDKDVGRIVIGLFGKVVPKTVENFVALATGEKGYG-------YKGSKFHRVI 69
Query: 65 PGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFISAG 124
FM Q SIYG F DENF KH G G +SMANAGP TNGSQFFI+
Sbjct: 70 KDFMIQGGDITTGDGTGGVSIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFITLT 129
Query: 125 KTEWLDGKHVAFGQVVEGMNVVKAIE 150
K WLDGKHV FG+V++GM VV +IE
Sbjct: 130 KPTWLDGKHVVFGKVIDGMTVVHSIE 155
>pdb|2HE9|A Chain A, Structure Of The Peptidylprolyl Isomerase Domain Of The
Human Nk-Tumour Recognition Protein
pdb|2HE9|B Chain B, Structure Of The Peptidylprolyl Isomerase Domain Of The
Human Nk-Tumour Recognition Protein
Length = 192
Score = 155 bits (393), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 79/170 (46%), Positives = 106/170 (62%), Gaps = 2/170 (1%)
Query: 3 NPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKS-GKPLHYKGSSFH 61
+P+ FD+ + +P GRI+ +LF+D+ P+T +NF LC+GEKG+GK+ GK L YKGS+FH
Sbjct: 19 SPQCHFDIEINREPVGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGSTFH 78
Query: 62 RVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFI 121
RV+ FM Q ESIYG F DENF+ KH +LSMAN G TNGSQFFI
Sbjct: 79 RVVKNFMIQGGDFSEGNGKGGESIYGGYFKDENFILKHDRAFLLSMANRGKHTNGSQFFI 138
Query: 122 SAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSG-RTKKPVVIADCGI 170
+ LDG HV FG V+ G V++ IE + + + R V + DCG+
Sbjct: 139 TTKPAPHLDGVHVVFGLVISGFEVIEQIENLKTDAASRPYADVRVIDCGV 188
>pdb|2HAQ|A Chain A, Crystal Structure Of Cyclophilin A From Leishmania
Donovani
pdb|3EOV|A Chain A, Crystal Structure Of Cyclophilin From Leishmania Donovani
Ligated With Cyclosporin A
pdb|3EOV|B Chain B, Crystal Structure Of Cyclophilin From Leishmania Donovani
Ligated With Cyclosporin A
Length = 172
Score = 155 bits (391), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 87/166 (52%), Positives = 100/166 (60%), Gaps = 9/166 (5%)
Query: 5 KVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVI 64
KV+FD+ + +P GRI + LF P T ENFR LCTGE G G YK S FHRVI
Sbjct: 13 KVYFDVMIDSEPLGRITIGLFGKDAPLTTENFRQLCTGEHGFG-------YKDSIFHRVI 65
Query: 65 PGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFISAG 124
FM Q +SIYG KFADEN KH G LSMANAGP TNGSQFFI+
Sbjct: 66 QNFMIQGGDFTNFDGTGGKSIYGEKFADENLNVKHF-VGALSMANAGPNTNGSQFFITTA 124
Query: 125 KTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRS-GRTKKPVVIADCG 169
T WLDG+HV FG+V++GM+VV IEK + S R KPV I G
Sbjct: 125 PTPWLDGRHVVFGKVLDGMDVVLRIEKTKTNSHDRPVKPVKIVASG 170
>pdb|3BT8|A Chain A, Crystal Structure Of Mutant Cyclophilin (R147a) From
Leishmania Donovani
Length = 172
Score = 154 bits (388), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 87/166 (52%), Positives = 99/166 (59%), Gaps = 9/166 (5%)
Query: 5 KVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVI 64
KV+FD+ + +P GRI + LF P T ENFR LCTGE G G YK S FHRVI
Sbjct: 13 KVYFDVMIDSEPLGRITIGLFGKDAPLTTENFRQLCTGEHGFG-------YKDSIFHRVI 65
Query: 65 PGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFISAG 124
FM Q +SIYG KFADEN KH G LSMANAGP TNGSQFFI+
Sbjct: 66 QNFMIQGGDFTNFDGTGGKSIYGEKFADENLNVKHF-VGALSMANAGPNTNGSQFFITTA 124
Query: 125 KTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRS-GRTKKPVVIADCG 169
T WLDG HV FG+V++GM+VV IEK + S R KPV I G
Sbjct: 125 PTPWLDGAHVVFGKVLDGMDVVLRIEKTKTNSHDRPVKPVKIVASG 170
>pdb|2C3B|A Chain A, The Crystal Structure Of Aspergillus Fumigatus Cyclophilin
Reveals 3d Domain Swapping Of A Central Element
pdb|2C3B|B Chain B, The Crystal Structure Of Aspergillus Fumigatus Cyclophilin
Reveals 3d Domain Swapping Of A Central Element
Length = 172
Score = 149 bits (376), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 85/174 (48%), Positives = 100/174 (57%), Gaps = 16/174 (9%)
Query: 5 KVFFDMT-----VGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSS 59
+VFFD+ GRIV LF P+TA+NFR LC G G Y+ S+
Sbjct: 4 QVFFDVEYAPVGTAETKVGRIVFNLFDKDVPKTAKNFRELCKRPAGEG-------YREST 56
Query: 60 FHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQF 119
FHR+IP FM Q SIYG KFADENF +KH GILSMANAGP TNGSQF
Sbjct: 57 FHRIIPNFMIQGGDFTRGNGTGGRSIYGDKFADENFSRKHDKKGILSMANAGPNTNGSQF 116
Query: 120 FISAGKTEWLDGKHVAFGQVVE--GMNVVKAIEKMGSRSG--RTKKPVVIADCG 169
FI+ T WLDGKHV FG+V + +VVK IE +GS SG R+ I +CG
Sbjct: 117 FITTAVTSWLDGKHVVFGEVADEKSYSVVKEIEALGSSSGSVRSNTRPKIVNCG 170
>pdb|1Z81|A Chain A, Crystal Structure Of Cyclophilin From Plasmodium Yoelii
Length = 229
Score = 147 bits (371), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 75/172 (43%), Positives = 103/172 (59%), Gaps = 6/172 (3%)
Query: 2 ANPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFH 61
+NP VF D+ +G G+ ELF ++ P+T+ENFR CTGE + + P+ YK + FH
Sbjct: 58 SNPVVFMDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTGEYKV--NNLPVGYKNTIFH 115
Query: 62 RVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFI 121
RVI FM Q SIYG KF DENF KH G+LSMAN+GP TNG QFFI
Sbjct: 116 RVIKEFMIQGGDFINHNGSGSLSIYGEKFDDENFDIKHDKEGLLSMANSGPNTNGCQFFI 175
Query: 122 SAGKTEWLDGKHVAFGQVVEG--MNVVKAIEKMGSRS--GRTKKPVVIADCG 169
+ K EWLDGK+V FG++++ + ++K IE + + K P+ + +CG
Sbjct: 176 TTKKCEWLDGKNVVFGRIIDNDSLLLLKKIENVSVTPYIYKPKIPINVVECG 227
>pdb|1XYH|A Chain A, Crystal Structure Of Recombinant Human Cyclophilin J
pdb|2OK3|A Chain A, X-Ray Structure Of Human Cyclophilin J At 2.0 Angstrom
Length = 161
Score = 103 bits (256), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 63/158 (39%), Positives = 84/158 (53%), Gaps = 14/158 (8%)
Query: 17 AGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXX 76
G I +E+F + TP+T ENF ALC +Y G FHR I GFM Q
Sbjct: 9 VGDIKIEVFCERTPKTCENFLALCASN----------YYNGCIFHRNIKGFMVQTGDPTG 58
Query: 77 XXXXXXESIYGSKFADE-NFVKKHTGPGILSMANAGPGTNGSQFFISAGKTEWLDGKHVA 135
SI+G KF DE + KH G++SMAN GP TNGSQFFI+ GK LD K+
Sbjct: 59 TGRGG-NSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTV 117
Query: 136 FGQVVEGMNVVKAIEKM--GSRSGRTKKPVVIADCGIY 171
FG+V++G+ + +EK+ ++ R V I D I+
Sbjct: 118 FGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDITIH 155
>pdb|2OJU|A Chain A, X-Ray Structure Of Complex Of Human Cyclophilin J With
Cyclosporin A
pdb|2OJU|B Chain B, X-Ray Structure Of Complex Of Human Cyclophilin J With
Cyclosporin A
Length = 167
Score = 102 bits (255), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 63/158 (39%), Positives = 84/158 (53%), Gaps = 14/158 (8%)
Query: 17 AGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXX 76
G I +E+F + TP+T ENF ALC +Y G FHR I GFM Q
Sbjct: 15 VGDIKIEVFCERTPKTCENFLALCASN----------YYNGCIFHRNIKGFMVQTGDPTG 64
Query: 77 XXXXXXESIYGSKFADE-NFVKKHTGPGILSMANAGPGTNGSQFFISAGKTEWLDGKHVA 135
SI+G KF DE + KH G++SMAN GP TNGSQFFI+ GK LD K+
Sbjct: 65 TGRGG-NSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTV 123
Query: 136 FGQVVEGMNVVKAIEKM--GSRSGRTKKPVVIADCGIY 171
FG+V++G+ + +EK+ ++ R V I D I+
Sbjct: 124 FGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDITIH 161
>pdb|1XWN|A Chain A, Solution Structure Of Cyclophilin Like 1(Ppil1) And
Insights Into Its Interaction With Skip
Length = 174
Score = 101 bits (251), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 60/147 (40%), Positives = 82/147 (55%), Gaps = 17/147 (11%)
Query: 4 PKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRV 63
P V+ + ++G IV+EL+ P+T +NF L +G +Y G+ FHR+
Sbjct: 12 PNVYLETSMG-----IIVLELYWKHAPKTCKNFAELA--RRG--------YYNGTKFHRI 56
Query: 64 IPGFMCQXXXXXXXXXXXXESIYGSKFADENFVK-KHTGPGILSMANAGPGTNGSQFFIS 122
I FM Q SIYG +F DE K TG GIL+MANAGP TNGSQFF++
Sbjct: 57 IKDFMIQGGDPTGTGRGGA-SIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVT 115
Query: 123 AGKTEWLDGKHVAFGQVVEGMNVVKAI 149
T+WLDGKH FG+V +G+ +V +
Sbjct: 116 LAPTQWLDGKHTIFGRVCQGIGMVNRV 142
>pdb|2X7K|A Chain A, The Crystal Structure Of Ppil1 In Complex With
Cyclosporine A Suggests A Binding Mode For Skip
Length = 166
Score = 101 bits (251), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 60/147 (40%), Positives = 82/147 (55%), Gaps = 17/147 (11%)
Query: 4 PKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRV 63
P V+ + ++G IV+EL+ P+T +NF L +G +Y G+ FHR+
Sbjct: 12 PNVYLETSMG-----IIVLELYWKHAPKTCKNFAELA--RRG--------YYNGTKFHRI 56
Query: 64 IPGFMCQXXXXXXXXXXXXESIYGSKFADENFVK-KHTGPGILSMANAGPGTNGSQFFIS 122
I FM Q SIYG +F DE K TG GIL+MANAGP TNGSQFF++
Sbjct: 57 IKDFMIQGGDPTGTGRGGA-SIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVT 115
Query: 123 AGKTEWLDGKHVAFGQVVEGMNVVKAI 149
T+WLDGKH FG+V +G+ +V +
Sbjct: 116 LAPTQWLDGKHTIFGRVCQGIGMVNRV 142
>pdb|2K7N|A Chain A, Solution Structure Of The Ppil1 Bound To A Fragment Of
Skip
Length = 203
Score = 100 bits (250), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 60/147 (40%), Positives = 82/147 (55%), Gaps = 17/147 (11%)
Query: 4 PKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRV 63
P V+ + ++G IV+EL+ P+T +NF L +G +Y G+ FHR+
Sbjct: 12 PNVYLETSMG-----IIVLELYWKHAPKTCKNFAELA--RRG--------YYNGTKFHRI 56
Query: 64 IPGFMCQXXXXXXXXXXXXESIYGSKFADENFVK-KHTGPGILSMANAGPGTNGSQFFIS 122
I FM Q SIYG +F DE K TG GIL+MANAGP TNGSQFF++
Sbjct: 57 IKDFMIQGGDPTGTGRGGA-SIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVT 115
Query: 123 AGKTEWLDGKHVAFGQVVEGMNVVKAI 149
T+WLDGKH FG+V +G+ +V +
Sbjct: 116 LAPTQWLDGKHTIFGRVCQGIGMVNRV 142
>pdb|1ZKC|A Chain A, Crystal Structure Of The Cyclophiln_ring Domain Of Human
Peptidylprolyl Isomerase (Cyclophilin)-Like 2 Isoform B
pdb|1ZKC|B Chain B, Crystal Structure Of The Cyclophiln_ring Domain Of Human
Peptidylprolyl Isomerase (Cyclophilin)-Like 2 Isoform B
Length = 197
Score = 98.2 bits (243), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 62/159 (38%), Positives = 85/159 (53%), Gaps = 18/159 (11%)
Query: 18 GRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXX 77
G + +EL D+TP+T ENF LC K +Y G+ FHR I F+ Q
Sbjct: 29 GDLNLELHCDLTPKTCENFIRLC----------KKHYYDGTIFHRSIRNFVIQGGDPTGT 78
Query: 78 XXXXXESIYGSKFADE---NFVKKHTGPGILSMANAGPGTNGSQFFISAGKTEWLDGKHV 134
ES +G F DE N HTG GILSMAN+GP +N SQFFI+ +LD KH
Sbjct: 79 GTGG-ESYWGKPFKDEFRPNL--SHTGRGILSMANSGPNSNRSQFFITFRSCAYLDKKHT 135
Query: 135 AFGQVVEGMNVVKAIEKMGS--RSGRTKKPVVIADCGIY 171
FG+VV G +V+ A+E + S ++ R K+ + I ++
Sbjct: 136 IFGRVVGGFDVLTAMENVESDPKTDRPKEEIRIDATTVF 174
>pdb|2A2N|A Chain A, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
pdb|2A2N|B Chain B, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
pdb|2A2N|C Chain C, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
Length = 176
Score = 98.2 bits (243), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 64/160 (40%), Positives = 82/160 (51%), Gaps = 13/160 (8%)
Query: 4 PKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRV 63
PK D + G I +LF P+T ENF C + +Y G +FHR+
Sbjct: 17 PKRVSDSAIIHTSMGDIHTKLFPVECPKTVENF---CVHSRN-------GYYNGHTFHRI 66
Query: 64 IPGFMCQXXXXXXXXXXXXESIYGSKFADE-NFVKKHTGPGILSMANAGPGTNGSQFFIS 122
I GFM Q ESI+G +F DE + +H P LSMANAG TNGSQFFI+
Sbjct: 67 IKGFMIQTGDPTGTGMGG-ESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFIT 125
Query: 123 AGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKKP 162
T WLD KH FG+V +GM VV+ I + + +T KP
Sbjct: 126 VVPTPWLDNKHTVFGRVTKGMEVVQRISNV-KVNPKTDKP 164
>pdb|1W74|A Chain A, X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomerase A,
Ppia, Rv0009, From Mycobacterium Tuberculosis.
pdb|1W74|B Chain B, X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomerase A,
Ppia, Rv0009, From Mycobacterium Tuberculosis
Length = 191
Score = 94.4 bits (233), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 65/161 (40%), Positives = 81/161 (50%), Gaps = 11/161 (6%)
Query: 18 GRIVMELFADVTPRTAENFRALCTGEKGIGK---SGKPL--HYKGSSFHRVIPGFMCQXX 72
G I + LF + P+T NF L G K SG P Y G+ FHRVI GFM Q
Sbjct: 33 GDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQGG 92
Query: 73 XXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFISAGKTEWLDGK 132
+ +F E K P +L+MANAGPGTNGSQFFI+ GKT L+ +
Sbjct: 93 DPTGTGRGGPGYKFADEFHPELQFDK---PYLLAMANAGPGTNGSQFFITVGKTPHLNRR 149
Query: 133 HVAFGQVV--EGMNVVKAIEKMGSR-SGRTKKPVVIADCGI 170
H FG+V+ E VV+AI K + + R PVVI I
Sbjct: 150 HTIFGEVIDAESQRVVEAISKTATDGNDRPTDPVVIESITI 190
>pdb|2B71|A Chain A, Plasmodium Yoelii Cyclophilin-Like Protein
Length = 196
Score = 90.9 bits (224), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 59/147 (40%), Positives = 76/147 (51%), Gaps = 14/147 (9%)
Query: 18 GRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXX 77
G +EL+ +P+T NF LC E G Y + FHRVIP F+ Q
Sbjct: 48 GDFEVELYWYHSPKTCLNFYTLC--EMGF--------YDNTIFHRVIPNFVIQGGDPTGT 97
Query: 78 XXXXXESIYGSKFADE-NFVKKHTGPGILSMANAGPGTNGSQFFISAGKTEWLDGKHVAF 136
+SIYG F DE N KHTG GILSM+N GP TN SQFFI+ LDGKH F
Sbjct: 98 GKGG-KSIYGEYFEDEINKELKHTGAGILSMSNNGPNTNSSQFFITLAPLPHLDGKHTIF 156
Query: 137 GQVVEGMNVVKAIEKMGSRSGRTKKPV 163
+V + M ++ I + ++ T KP+
Sbjct: 157 ARVSKNMTCIENIASV--QTTATNKPI 181
>pdb|2FU0|A Chain A, Plasmodium Falciparum Cyclophilin Pfe0505w Putative
Cyclosporin- Binding Domain
Length = 160
Score = 88.2 bits (217), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 56/147 (38%), Positives = 74/147 (50%), Gaps = 14/147 (9%)
Query: 18 GRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXX 77
G I + LF +T +NF +Y FHRVI FM Q
Sbjct: 15 GDIHISLFYKECKKTVQNFSVHSING----------YYNNCIFHRVIKHFMVQTGDPSGD 64
Query: 78 XXXXXESIYGSKFADENFVK-KHTGPGILSMANAGPGTNGSQFFISAGKTEWLDGKHVAF 136
ESI+G++F DE F H+ P ++SMAN GP TNGSQFFI+ WLD KH F
Sbjct: 65 GTGG-ESIWGNEFEDEFFDHLNHSKPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHTVF 123
Query: 137 GQVVEGMNVVKAIEKMGSRSGRTKKPV 163
G+V +G +V IEK+ R+ + KP+
Sbjct: 124 GKVTQGSKIVLDIEKV--RTDKRDKPL 148
>pdb|2HQ6|A Chain A, Structure Of The Cyclophilin_cecyp16-like Domain Of The
Serologically Defined Colon Cancer Antigen 10 From Homo
Sapiens
Length = 185
Score = 79.7 bits (195), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 76/159 (47%), Gaps = 14/159 (8%)
Query: 17 AGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXX 76
AG I +EL++ P+ NF LC +Y + FHRV+PGF+ Q
Sbjct: 33 AGDIDIELWSKEAPKACRNFIQLCL----------EAYYDNTIFHRVVPGFIVQGGDPTG 82
Query: 77 XXXXXXESIYGSKFADENFVK-KHTGPGILSMANAGPGTNGSQFFISAGKTEWLDGKHVA 135
ESIYG+ F DE + + G+++MANAG NGSQFF + G+ + L+ KH
Sbjct: 83 TGSGG-ESIYGAPFKDEFHSRLRFNRRGLVAMANAGSHDNGSQFFFTLGRADELNNKHTI 141
Query: 136 FGQVVEGM--NVVKAIEKMGSRSGRTKKPVVIADCGIYY 172
FG+V N+++ E R P I C + +
Sbjct: 142 FGKVTGDTVYNMLRLSEVDIDDDERPHNPHKIKSCEVLF 180
>pdb|2POE|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_1660
pdb|2QER|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl- Prolyl Cis-Trans Isomerase Cgd2_1660 In
The Presence Of Dipeptide Ala-Pro
Length = 185
Score = 77.8 bits (190), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 82/160 (51%), Gaps = 17/160 (10%)
Query: 18 GRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXX 77
G + ELF P+ +NF AL SG +YK + FH+ I GF+ Q
Sbjct: 26 GDLKFELFCSQCPKACKNFLALSA-------SG---YYKNTIFHKNIKGFIIQGGDPTGT 75
Query: 78 XXXXXESIYGSKFADENFVK-KHTGPGILSMANAG----PGTNGSQFFISAGKTEWLDGK 132
ESIYG F DE + + K+ GILSMA+ G P TNGSQFFI+ L+G+
Sbjct: 76 GKGG-ESIYGRYFDDEIYPELKYDRRGILSMASKGASKKPNTNGSQFFITYSSLPQLNGE 134
Query: 133 HVAFGQVVEGMNVVKAIEKMGS-RSGRTKKPVVIADCGIY 171
+V FG++++G + +E S +S + ++I D I+
Sbjct: 135 YVIFGKLIDGFETLNTLENCPSDKSHKPIDEIIIKDIVIH 174
>pdb|3BO7|A Chain A, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|B Chain B, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|C Chain C, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|D Chain D, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
Length = 201
Score = 73.2 bits (178), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 72/148 (48%), Gaps = 24/148 (16%)
Query: 18 GRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXX 77
G + +EL AD+ PR ++F LC + ++ + FHR I FM Q
Sbjct: 16 GSLNIELHADMAPRACDSFLRLCAVK----------YFDDTIFHRCIRNFMIQGGRAELR 65
Query: 78 XXXXXESIY-----------GSKFADENFVKK--HTGPGILSMANAGPGTNGSQFFISAG 124
+ + G+ F DE F + H G G+LSMAN G +N S+FFI+
Sbjct: 66 QPSKKKEVQQSPRSISGFPGGAPFEDE-FDNRLVHQGIGVLSMANDGKHSNLSEFFITFK 124
Query: 125 KTEWLDGKHVAFGQVVEGMNVVKAIEKM 152
E L+ KH FG+VV G++V++ EK+
Sbjct: 125 SCEHLNNKHTIFGRVVGGLDVLRQWEKL 152
>pdb|3T1U|A Chain A, Crystal Structure Of The Complex Of Cyclophilin-a Enzyme
From Azotobacter Vinelandii With Sucafpfpna Peptide
Length = 163
Score = 60.1 bits (144), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 69/158 (43%), Gaps = 26/158 (16%)
Query: 18 GRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXX 77
G I ++LFAD P TA NF K HY G+ FHRVI GFM Q
Sbjct: 9 GTITLKLFADKAPETAANFEQYV----------KDGHYDGTIFHRVIDGFMIQGGGFEPG 58
Query: 78 XXXXXESIYGSKFADENFV-KKHTGPGILSMANA-GPGTNGSQFFISAGKTEWLDGK--- 132
A+ KK+T ++MA P + +QFFI+ +LD
Sbjct: 59 MKQKSTRAPIKNEANNGLSNKKYT----IAMARTPDPHSASAQFFINVKDNAFLDHTAPT 114
Query: 133 -----HVAFGQVVEGMNVVKAIEKM--GSRSGRTKKPV 163
+ FG+VVEG +VV I+ + GSR+G PV
Sbjct: 115 AHGWGYAVFGEVVEGTDVVDRIKSVATGSRAGHGDVPV 152
>pdb|2OSE|A Chain A, Crystal Structure Of The Mimivirus Cyclophilin
Length = 234
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 77/197 (39%), Gaps = 32/197 (16%)
Query: 3 NPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGE------KGIGKSGKPLH-- 54
NP+V+ D+ + + GR+ ++LF D P ENF L G+ G GK H
Sbjct: 14 NPRVYMDIVLNNEIIGRLQIKLFRDAFPAGVENFVQLTNGKTYRVNSNGTGKYKYNRHIN 73
Query: 55 --YKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADE-------NFVKKHTGPGIL 105
Y+G FH V + S G+ + DE ++ H G+L
Sbjct: 74 RTYEGCKFHNV----LHNNYIVSGDIYNSNGSSAGTVYCDEPIPPVFGDYFYPHESKGLL 129
Query: 106 SMA----NAGPGTNGSQFFIS------AGKTEWLDGKHVAFGQVVEGMNVVKAIEKM-GS 154
S+ +G S F I+ + + LD V GQV G++V+ I M
Sbjct: 130 SLVPYTDESGNRYYDSTFMITLDDIRPSNVLDELDRDQVVIGQVYGGLDVLDKINSMIKP 189
Query: 155 RSGRTKKPVVIADCGIY 171
+GR I CG Y
Sbjct: 190 YAGRKYPTFSIGKCGAY 206
>pdb|1J2A|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant
pdb|1V9T|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
Succinyl-Ala- Pro-Ala-P-Nitroanilide
pdb|1V9T|B Chain B, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
Succinyl-Ala- Pro-Ala-P-Nitroanilide
pdb|1VAI|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
N- Acetyl-Ala-Ala-Pro-Ala-7-Amino-4-Methylcoumarin
pdb|1VAI|B Chain B, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
N- Acetyl-Ala-Ala-Pro-Ala-7-Amino-4-Methylcoumarin
Length = 166
Score = 50.1 bits (118), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 68/165 (41%), Gaps = 24/165 (14%)
Query: 17 AGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXX 76
AG I +EL P + +NF SG Y ++FHRVIPGFM Q
Sbjct: 13 AGNIELELDKQKAPVSVQNFVDYV-------NSG---FYNNTTFHRVIPGFMIQGGGFTE 62
Query: 77 XXXXXXESIYGSKFADENFVKKHTGPGILSMA-NAGPGTNGSQFFISAGKTEWLD-GK-- 132
+ AD G ++MA A + SQFFI+ +LD G+
Sbjct: 63 QMQQKKPNPPIKNEADNGLRNTR---GTIAMARTADKDSATSQFFINVADNAFLDHGQRD 119
Query: 133 --HVAFGQVVEGMNVVKAIEK-----MGSRSGRTKKPVVIADCGI 170
+ FG+VV+GM+V I + +G KPVVI +
Sbjct: 120 FGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVILSATV 164
>pdb|1CLH|A Chain A, Three-Dimensional Solution Structure Of Escherichia Coli
Periplasmic Cyclophilin
Length = 166
Score = 50.1 bits (118), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 68/165 (41%), Gaps = 24/165 (14%)
Query: 17 AGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXX 76
AG I +EL P + +NF SG Y ++FHRVIPGFM Q
Sbjct: 13 AGNIELELDKQKAPVSVQNFVDYVN-------SG---FYNNTTFHRVIPGFMIQGGGFTE 62
Query: 77 XXXXXXESIYGSKFADENFVKKHTGPGILSMA-NAGPGTNGSQFFISAGKTEWLD-GK-- 132
+ AD G ++MA A + SQFFI+ +LD G+
Sbjct: 63 QMQQKKPNPPIKNEADNGLRNTR---GTIAMARTADKDSATSQFFINVADNAFLDHGQRD 119
Query: 133 --HVAFGQVVEGMNVVKAIEK-----MGSRSGRTKKPVVIADCGI 170
+ FG+VV+GM+V I + +G KPVVI +
Sbjct: 120 FGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVILSAKV 164
>pdb|3S6M|A Chain A, The Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei
Length = 167
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 69/150 (46%), Gaps = 26/150 (17%)
Query: 18 GRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXX 77
G I +EL P+T ENF L +KG HY G+ FHRVI GFM Q
Sbjct: 13 GVIKLELDEAKAPKTVENF--LNYVKKG--------HYDGTIFHRVINGFMIQ---GGGF 59
Query: 78 XXXXXESIYGSKFADE--NFVKKHTGPGILSMANAGPGTNGSQFFISAGKTEWLDGK--- 132
+ + A+E N +K T ++ N P + +QFFI+ E+L+
Sbjct: 60 EPGLKQKPTDAPIANEANNGLKNDTYTIAMARTN-DPHSATAQFFINVNDNEFLNHSSPT 118
Query: 133 -----HVAFGQVVEGMNVVKAIE--KMGSR 155
+ FG+VVEG ++V I+ K GS+
Sbjct: 119 PQGWGYAVFGKVVEGQDIVDKIKAVKTGSK 148
>pdb|2NUL|A Chain A, Peptidylprolyl Isomerase From E. Coli
pdb|2RS4|A Chain A, Nmr Strucure Of Stereo-Array Isotope Labelled (Sail)
Peptidyl-Prolyl Cis-Trans Isomerase From E. Coli (Eppib)
Length = 164
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 67/152 (44%), Gaps = 27/152 (17%)
Query: 18 GRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXX-- 75
G IV++ F D P T +NF C + Y + FHRVI GFM Q
Sbjct: 9 GDIVIKTFDDKAPETVKNFLDYC----------REGFYNNTIFHRVINGFMIQGGGFEPG 58
Query: 76 XXXXXXXESIYGSKFADENFVKKHTGPGILSMANA-GPGTNGSQFFISAGKTEWLDGK-- 132
E I + N K+T G L+MA P + +QFFI+ ++L+
Sbjct: 59 MKQKATKEPIKN----EANNGLKNT-RGTLAMARTQAPHSATAQFFINVVDNDFLNFSGE 113
Query: 133 ------HVAFGQVVEGMNVVKAIEKMGS-RSG 157
+ F +VV+GM+VV I+ + + RSG
Sbjct: 114 SLQGWGYCVFAEVVDGMDVVDKIKGVATGRSG 145
>pdb|1LOP|A Chain A, Cyclophilin A Complexed With
Succinyl-Ala-Pro-Ala-P-Nitroanilide
Length = 164
Score = 43.1 bits (100), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 66/152 (43%), Gaps = 27/152 (17%)
Query: 18 GRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXX-- 75
G IV++ F D P T +NF C + Y + FHRVI GFM Q
Sbjct: 9 GDIVIKTFDDKAPETVKNFLDYC----------REGFYNNTIFHRVINGFMIQGGGFEPG 58
Query: 76 XXXXXXXESIYGSKFADENFVKKHTGPGILSMANA-GPGTNGSQFFISAGKTEWLDGK-- 132
E I + N K+T G L+MA P + +QFFI+ ++L+
Sbjct: 59 MKQKATKEPIKN----EANNGLKNT-RGTLAMARTQAPHSATAQFFINVVDNDFLNFSGE 113
Query: 133 ------HVAFGQVVEGMNVVKAIEKMGS-RSG 157
+ F +VV+GM+ V I+ + + RSG
Sbjct: 114 SLQGWGYCVFAEVVDGMDEVDKIKGVATGRSG 145
>pdb|3BKP|A Chain A, Crystal Structure Of The Toxoplasma Gondii Cyclophilin,
49.m03261
Length = 232
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 59/139 (42%), Gaps = 26/139 (18%)
Query: 18 GRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXX 77
G + +EL+A P NF LC +G +Y + FHRV+ F+ Q
Sbjct: 31 GDLDVELWARECPLACRNFVQLCL--EG--------YYVNTIFHRVVKDFIVQGGDPTGT 80
Query: 78 XXXXXESIY-GSKFADENFVK-KHTGPGILSMANAGP--------------GTNGSQFFI 121
++ + G F E + K G++ +AN G GTNG+QFFI
Sbjct: 81 GRGGADTTFDGKPFDVETHPRLKFRYRGLVGVANLGRSSKDAENDERGRSLGTNGNQFFI 140
Query: 122 SAGKTEWLDGKHVAFGQVV 140
+ + + L+ + FG+V
Sbjct: 141 TLARADVLNNAYTLFGKVT 159
>pdb|1QCW|A Chain A, Flavocytochrome B2, Arg289lys Mutant
pdb|1QCW|B Chain B, Flavocytochrome B2, Arg289lys Mutant
Length = 410
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 22 MELFADV-TPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHR 62
+E+F D R + +ALC G KG+G G+P Y S + R
Sbjct: 303 LEVFVDGGVRRGTDVLKALCLGAKGVG-LGRPFLYANSCYGR 343
>pdb|1KBJ|A Chain A, Crystallographic Study Of The Recombinant Flavin-Binding
Domain Of Baker's Yeast Flavocytochrome B2: Comparison
With The Intact Wild- Type Enzyme
pdb|1KBJ|B Chain B, Crystallographic Study Of The Recombinant Flavin-Binding
Domain Of Baker's Yeast Flavocytochrome B2: Comparison
With The Intact Wild- Type Enzyme
Length = 412
Score = 28.1 bits (61), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 22 MELFADV-TPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHR 62
+E+F D R + +ALC G KG+G G+P Y S + R
Sbjct: 305 LEVFVDGGVRRGTDVLKALCLGAKGVG-LGRPFLYANSCYGR 345
>pdb|1SZF|A Chain A, A198g:l230a Mutant Flavocytochrome B2 With Pyruvate Bound
pdb|1SZF|B Chain B, A198g:l230a Mutant Flavocytochrome B2 With Pyruvate Bound
pdb|1SZG|A Chain A, A198g:l230a Flavocytochrome B2 With Sulfite Bound
pdb|1SZG|B Chain B, A198g:l230a Flavocytochrome B2 With Sulfite Bound
Length = 511
Score = 28.1 bits (61), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 22 MELFADV-TPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHR 62
+E+F D R + +ALC G KG+G G+P Y S + R
Sbjct: 404 LEVFVDGGVRRGTDVLKALCLGAKGVG-LGRPFLYANSCYGR 444
>pdb|1LTD|A Chain A, The 2.6 Angstroms Refined Structure Of The Escherichia
Coli Recombinant Saccharomyces Cerevisiae
Flavocytochrome B2-Sulphite Complex
pdb|1LTD|B Chain B, The 2.6 Angstroms Refined Structure Of The Escherichia
Coli Recombinant Saccharomyces Cerevisiae
Flavocytochrome B2-Sulphite Complex
Length = 506
Score = 28.1 bits (61), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 22 MELFADV-TPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHR 62
+E+F D R + +ALC G KG+G G+P Y S + R
Sbjct: 399 LEVFVDGGVRRGTDVLKALCLGAKGVG-LGRPFLYANSCYGR 439
>pdb|2OZ0|A Chain A, Mechanistic And Structural Studies Of H373q
Flavocytochrome B2: Effects Of Mutating The Active Site
Base
pdb|2OZ0|B Chain B, Mechanistic And Structural Studies Of H373q
Flavocytochrome B2: Effects Of Mutating The Active Site
Base
Length = 511
Score = 28.1 bits (61), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 22 MELFADV-TPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHR 62
+E+F D R + +ALC G KG+G G+P Y S + R
Sbjct: 404 LEVFVDGGVRRGTDVLKALCLGAKGVG-LGRPFLYANSCYGR 444
>pdb|1LDC|A Chain A, X-Ray Structure Of Two Complexes Of The Y143f
Flavocytochrome B2 Mutant Crystallized In The Presence
Of Lactate Or Phenyl-Lactate
pdb|1LDC|B Chain B, X-Ray Structure Of Two Complexes Of The Y143f
Flavocytochrome B2 Mutant Crystallized In The Presence
Of Lactate Or Phenyl-Lactate
pdb|1LCO|A Chain A, X-Ray Structure Of Two Complexes Of The Y143f
Flavocytochrome B2 Mutant Crystallized In The Presence
Of Lactate Or Phenyl-Lactate
pdb|1LCO|B Chain B, X-Ray Structure Of Two Complexes Of The Y143f
Flavocytochrome B2 Mutant Crystallized In The Presence
Of Lactate Or Phenyl-Lactate
Length = 511
Score = 28.1 bits (61), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 22 MELFADV-TPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHR 62
+E+F D R + +ALC G KG+G G+P Y S + R
Sbjct: 404 LEVFVDGGVRRGTDVLKALCLGAKGVG-LGRPFLYANSCYGR 444
>pdb|1SZE|A Chain A, L230a Mutant Flavocytochrome B2 With Benzoylformate
pdb|1SZE|B Chain B, L230a Mutant Flavocytochrome B2 With Benzoylformate
Length = 511
Score = 28.1 bits (61), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 22 MELFADV-TPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHR 62
+E+F D R + +ALC G KG+G G+P Y S + R
Sbjct: 404 LEVFVDGGVRRGTDVLKALCLGAKGVG-LGRPFLYANSCYGR 444
>pdb|1FCB|A Chain A, Molecular Structure Of Flavocytochrome B2 At 2.4 Angstroms
Resolution
pdb|1FCB|B Chain B, Molecular Structure Of Flavocytochrome B2 At 2.4 Angstroms
Resolution
pdb|1KBI|A Chain A, Crystallographic Study Of The Recombinant Flavin-Binding
Domain Of Baker's Yeast Flavocytochrome B2: Comparison
With The Intact Wild- Type Enzyme
pdb|1KBI|B Chain B, Crystallographic Study Of The Recombinant Flavin-Binding
Domain Of Baker's Yeast Flavocytochrome B2: Comparison
With The Intact Wild- Type Enzyme
Length = 511
Score = 28.1 bits (61), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 22 MELFADV-TPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHR 62
+E+F D R + +ALC G KG+G G+P Y S + R
Sbjct: 404 LEVFVDGGVRRGTDVLKALCLGAKGVG-LGRPFLYANSCYGR 444
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,648,628
Number of Sequences: 62578
Number of extensions: 221805
Number of successful extensions: 721
Number of sequences better than 100.0: 85
Number of HSP's better than 100.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 555
Number of HSP's gapped (non-prelim): 87
length of query: 180
length of database: 14,973,337
effective HSP length: 93
effective length of query: 87
effective length of database: 9,153,583
effective search space: 796361721
effective search space used: 796361721
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)