Query 030245
Match_columns 180
No_of_seqs 149 out of 1039
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 10:47:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030245.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030245hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0546 HSP90 co-chaperone CPR 100.0 3.5E-59 7.7E-64 382.1 15.3 172 3-174 8-181 (372)
2 KOG0880 Peptidyl-prolyl cis-tr 100.0 4.7E-54 1E-58 325.8 17.1 167 4-177 40-208 (217)
3 PTZ00060 cyclophilin; Provisio 100.0 8.6E-52 1.9E-56 319.4 21.1 171 1-172 13-183 (183)
4 cd01926 cyclophilin_ABH_like c 100.0 6.7E-51 1.5E-55 309.7 20.3 164 4-169 1-164 (164)
5 KOG0879 U-snRNP-associated cyc 100.0 1.7E-51 3.7E-56 295.1 12.7 167 3-171 10-177 (177)
6 PLN03149 peptidyl-prolyl isome 100.0 2.5E-50 5.4E-55 311.8 19.3 169 1-171 16-186 (186)
7 PTZ00221 cyclophilin; Provisio 100.0 1.6E-49 3.6E-54 317.1 21.3 171 3-177 52-225 (249)
8 KOG0111 Cyclophilin-type pepti 100.0 1.2E-48 2.5E-53 301.3 10.0 165 1-172 134-298 (298)
9 cd01923 cyclophilin_RING cyclo 100.0 8.3E-47 1.8E-51 285.8 19.5 151 15-176 6-158 (159)
10 KOG0881 Cyclophilin type pepti 100.0 8E-48 1.7E-52 273.2 8.4 152 3-170 9-162 (164)
11 cd01928 Cyclophilin_PPIL3_like 100.0 9.5E-46 2.1E-50 278.4 17.8 144 15-169 7-152 (153)
12 COG0652 PpiB Peptidyl-prolyl c 100.0 7.9E-46 1.7E-50 277.4 15.8 145 14-171 5-157 (158)
13 cd01921 cyclophilin_RRM cyclop 100.0 2E-45 4.3E-50 280.1 17.9 151 15-176 4-164 (166)
14 cd01927 cyclophilin_WD40 cyclo 100.0 1.7E-45 3.8E-50 275.6 17.1 142 15-167 4-147 (148)
15 cd01922 cyclophilin_SpCYP2_lik 100.0 3.6E-45 7.9E-50 273.2 16.8 142 15-167 4-146 (146)
16 cd01925 cyclophilin_CeCYP16-li 100.0 2.2E-43 4.9E-48 269.9 18.6 150 15-175 12-164 (171)
17 PRK10903 peptidyl-prolyl cis-t 100.0 1.1E-42 2.3E-47 269.9 18.5 151 3-171 28-189 (190)
18 KOG0883 Cyclophilin type, U bo 100.0 2.3E-43 4.9E-48 290.3 10.9 153 15-178 284-438 (518)
19 PRK10791 peptidyl-prolyl cis-t 100.0 1.2E-41 2.7E-46 258.5 18.0 144 15-171 6-163 (164)
20 cd01920 cyclophilin_EcCYP_like 100.0 4.2E-41 9.1E-46 253.6 16.6 140 15-167 4-154 (155)
21 PF00160 Pro_isomerase: Cyclop 100.0 9.4E-41 2E-45 251.3 17.1 151 7-170 1-155 (155)
22 KOG0882 Cyclophilin-related pe 100.0 6.1E-42 1.3E-46 286.4 11.3 148 12-170 408-557 (558)
23 KOG0884 Similar to cyclophilin 100.0 6.6E-41 1.4E-45 236.7 11.4 147 15-172 7-156 (161)
24 cd00317 cyclophilin cyclophili 100.0 1.6E-39 3.6E-44 242.4 16.7 141 15-167 4-146 (146)
25 KOG0865 Cyclophilin type pepti 100.0 1.5E-40 3.2E-45 250.9 9.8 164 1-171 1-167 (167)
26 cd01924 cyclophilin_TLP40_like 100.0 4.3E-38 9.3E-43 241.5 14.3 128 14-151 3-164 (176)
27 KOG0885 Peptidyl-prolyl cis-tr 100.0 4.1E-37 8.9E-42 252.1 11.9 149 15-174 19-170 (439)
28 KOG0415 Predicted peptidyl pro 100.0 1.2E-36 2.5E-41 248.3 13.5 149 15-174 7-165 (479)
29 KOG0882 Cyclophilin-related pe 97.9 6.9E-06 1.5E-10 70.4 2.6 149 19-178 113-269 (558)
30 TIGR03268 methan_mark_3 putati 96.7 0.012 2.5E-07 51.6 9.2 102 19-151 202-303 (503)
31 PRK00969 hypothetical protein; 96.7 0.013 2.7E-07 51.5 8.9 102 19-151 205-306 (508)
32 COG4070 Predicted peptidyl-pro 96.6 0.0095 2.1E-07 50.8 7.6 103 18-151 203-305 (512)
33 TIGR03268 methan_mark_3 putati 96.6 0.028 6.1E-07 49.3 10.5 113 19-151 376-495 (503)
34 PF12903 DUF3830: Protein of u 96.1 0.043 9.2E-07 40.9 7.6 109 18-151 8-130 (147)
35 PRK00969 hypothetical protein; 95.3 0.12 2.5E-06 45.7 8.5 109 15-151 57-167 (508)
36 COG4070 Predicted peptidyl-pro 94.7 0.13 2.8E-06 44.1 6.9 112 19-151 377-498 (512)
37 PF04126 Cyclophil_like: Cyclo 84.6 12 0.00027 26.7 8.5 47 100-151 60-113 (120)
38 PF06138 Chordopox_E11: Chordo 62.8 57 0.0012 23.7 7.5 52 1-66 1-61 (130)
39 COG2164 Uncharacterized conser 55.4 12 0.00027 26.2 2.4 22 18-40 13-34 (126)
40 PF08415 NRPS: Nonribosomal pe 50.8 18 0.00039 22.2 2.5 28 140-168 4-31 (58)
41 PF05913 DUF871: Bacterial pro 43.5 15 0.00033 31.4 1.8 51 100-151 298-349 (357)
42 COG4391 Uncharacterized protei 39.6 19 0.00041 22.7 1.3 10 2-11 35-44 (62)
43 PHA03001 putative virion core 36.3 1.7E+02 0.0037 21.3 7.6 52 1-66 1-60 (132)
44 PF10276 zf-CHCC: Zinc-finger 36.2 25 0.00054 20.2 1.3 11 2-12 15-25 (40)
45 COG0219 CspR Predicted rRNA me 35.1 48 0.001 24.9 3.1 33 20-65 3-35 (155)
46 PF09383 NIL: NIL domain; Int 29.1 1.5E+02 0.0033 18.7 4.6 27 12-40 40-66 (76)
47 COG1765 Predicted redox protei 23.6 1.6E+02 0.0034 21.4 4.1 30 3-40 83-112 (137)
48 PF11314 DUF3117: Protein of u 22.6 49 0.0011 19.8 1.0 26 6-33 19-44 (51)
49 COG0026 PurK Phosphoribosylami 22.2 2.5E+02 0.0055 24.3 5.6 49 116-164 247-305 (375)
50 PF12396 DUF3659: Protein of u 20.3 2.4E+02 0.0052 17.8 4.3 43 128-172 15-60 (64)
51 PF09087 Cyc-maltodext_N: Cycl 20.2 1.9E+02 0.004 19.6 3.6 23 5-27 50-72 (88)
No 1
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.5e-59 Score=382.10 Aligned_cols=172 Identities=66% Similarity=1.100 Sum_probs=166.2
Q ss_pred CcEEEEEEEECCEEeEEEEEEEcCCCChHHHHHHHHhhcCCCCCC-cCCCceeecCCEEEEeecCcEEEeCCCCCCCCCC
Q 030245 3 NPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIG-KSGKPLHYKGSSFHRVIPGFMCQGGDFTAGNGTG 81 (180)
Q Consensus 3 ~p~v~~di~~~~t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~~~~-~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~ 81 (180)
||+|||||++++...|||+||||.|.||+||+||..||+|++|.+ ..++...|+|+.||||+++|||||||++.++|++
T Consensus 8 ~pr~ffDISI~ge~~GRIvfeLf~dv~PKTaENFraLCtGE~G~~~~~gk~L~YKG~~FHRViK~FMiQgGDfs~gnGtG 87 (372)
T KOG0546|consen 8 NPRVFFDISIGGEPAGRIVFELFNDVVPKTAENFRALCTGEKGGGLTTGKPLHYKGSRFHRVIKNFMIQGGDFSEGNGTG 87 (372)
T ss_pred CceEEEEEEeCCcccceEEEEeecccCchhHHHHHHHhccccCCCCCCCCeeeecCchhheeeecceeeccccccCCCCC
Confidence 899999999999999999999999999999999999999999853 3578899999999999999999999999999999
Q ss_pred CCcccCCCCCCCccccCCCCceEEEeeecCCCCCCccEEEEcCCCCCCCCCccEEEEEEcCHHHHHHHHhCCCC-CCCCC
Q 030245 82 GESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSR-SGRTK 160 (180)
Q Consensus 82 ~~~~~~~~~~~e~~~~~~~~~G~vs~~~~g~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~-~~~p~ 160 (180)
++++||..|+||++.++|+++++|||||.|||+||||||||+.+.|||||+|+|||+||+|++|++.|+.+.++ ..+|.
T Consensus 88 GeSIYG~~FdDEnF~lKHdrpflLSMAN~GpNTNgSQFFITT~p~PHLdGkHVVFGqVI~G~~VVr~IEn~~~d~~skP~ 167 (372)
T KOG0546|consen 88 GESIYGEKFDDENFELKHDRPFLLSMANRGPNTNGSQFFITTVPTPHLDGKHVVFGQVIKGKEVVREIENLETDEESKPL 167 (372)
T ss_pred cccccccccccccceeccCcchhhhhhcCCCCCCCcceEEeCCCCCCcCCceeEEeeEeechhHHHHHhccccccCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999 55899
Q ss_pred CCeEEeeeeEEeeC
Q 030245 161 KPVVIADCGIYYYV 174 (180)
Q Consensus 161 ~~i~I~~cg~l~~~ 174 (180)
.+|.|.+||+|..-
T Consensus 168 ~dV~I~dCGel~~~ 181 (372)
T KOG0546|consen 168 ADVVISDCGELVKK 181 (372)
T ss_pred cceEeccccccccc
Confidence 99999999999865
No 2
>KOG0880 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.7e-54 Score=325.81 Aligned_cols=167 Identities=64% Similarity=1.080 Sum_probs=159.6
Q ss_pred cEEEEEEEECCEEeEEEEEEEcCCCChHHHHHHHHhhc-CCCCCCcCCCceeecCCEEEEeecCcEEEeCCCCCCCCCCC
Q 030245 4 PKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCT-GEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTAGNGTGG 82 (180)
Q Consensus 4 p~v~~di~~~~t~~G~i~ieL~~~~aP~~~~nF~~l~~-g~~~~~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~ 82 (180)
.+|||||++++...|||+|+||++.+|+||+||.+||+ +.+++| |.|++||||+|||+|||||++.+++.++
T Consensus 40 ~kV~fdi~~g~~~~grIvigLfG~~vPKTV~NF~~l~~~~~~~~g-------Y~gS~FhRVi~nfmIQGGd~t~g~gtGg 112 (217)
T KOG0880|consen 40 HKVYFDIEIGGEPVGRIVIGLFGKVVPKTVENFRALATSGEKGYG-------YKGSKFHRVIPNFMIQGGDFTKGDGTGG 112 (217)
T ss_pred eEEEEEEEECCEeccEEEEEeccccchHHHHHHHHHHccCCCCcc-------cCCceeeeeecCceeecCccccCCCCCC
Confidence 37999999999999999999999999999999999998 666654 9999999999999999999999999999
Q ss_pred CcccCCCCCCCccccCCCCceEEEeeecCCCCCCccEEEEcCCCCCCCCCccEEEEEEcCHHHHHHHHhCCCC-CCCCCC
Q 030245 83 ESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSR-SGRTKK 161 (180)
Q Consensus 83 ~~~~~~~~~~e~~~~~~~~~G~vs~~~~g~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~-~~~p~~ 161 (180)
.++||.+|++|++.++|+++|.||||+.||++||||||||+...+|||++++|||+|++|||+|.+|+...++ +++|.+
T Consensus 113 ~SIyG~~F~DENf~LkH~rpG~lSMAn~GpDtNGsQFfItT~~t~wLDGkhVVFGqVl~Gmdvv~~Ie~~~TD~~dkP~e 192 (217)
T KOG0880|consen 113 KSIYGEKFPDENFKLKHDRPGRLSMANAGPDTNGSQFFITTVKTPWLDGKHVVFGQVLEGMDVVRKIENVKTDERDKPLE 192 (217)
T ss_pred eEeecCCCCCccceeecCCCceEeeeccCCCCCCceEEEEecCCccccCceeEEeeehhhHHHHHHHHhcccCCCCCccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999 899999
Q ss_pred CeEEeeeeEEeeCCCC
Q 030245 162 PVVIADCGIYYYVGVS 177 (180)
Q Consensus 162 ~i~I~~cg~l~~~~~~ 177 (180)
+++|.+||.|....++
T Consensus 193 ~v~I~~~g~l~~~~~~ 208 (217)
T KOG0880|consen 193 DVVIANCGELPVEYLE 208 (217)
T ss_pred cEEEeecCcccccchh
Confidence 9999999998765543
No 3
>PTZ00060 cyclophilin; Provisional
Probab=100.00 E-value=8.6e-52 Score=319.41 Aligned_cols=171 Identities=68% Similarity=1.156 Sum_probs=157.9
Q ss_pred CCCcEEEEEEEECCEEeEEEEEEEcCCCChHHHHHHHHhhcCCCCCCcCCCceeecCCEEEEeecCcEEEeCCCCCCCCC
Q 030245 1 MANPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTAGNGT 80 (180)
Q Consensus 1 ~~~p~v~~di~~~~t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~~~~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~ 80 (180)
|+||+||||+++++++.|+|+||||.+.||++|+||++||+|..... +++.++|+++.||||+|+++||+|++....+.
T Consensus 13 ~~~~~v~~di~i~~~~~G~ivIeL~~d~aP~t~~nF~~L~~g~~~~~-~g~~~~Y~~~~fhRvi~~~~iqgGd~~~~~g~ 91 (183)
T PTZ00060 13 SKRPKVFFDISIDNAPAGRIVFELFSDVTPKTAENFRALCIGDKVGS-SGKNLHYKGSIFHRIIPQFMCQGGDITNHNGT 91 (183)
T ss_pred CCCCEEEEEEEECCEeCceEEEEEcCCCCcHHHHHHHHHhcCCcccc-cCcccccCCeEEEEEcCCCeEEeCCccCCCCC
Confidence 46999999999999999999999999999999999999998765422 34678999999999999999999998766677
Q ss_pred CCCcccCCCCCCCccccCCCCceEEEeeecCCCCCCccEEEEcCCCCCCCCCccEEEEEEcCHHHHHHHHhCCCCCCCCC
Q 030245 81 GGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTK 160 (180)
Q Consensus 81 ~~~~~~~~~~~~e~~~~~~~~~G~vs~~~~g~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~p~ 160 (180)
++.++++..+++|...++|.++|+|||++.++++++|||||++++.|+||++|+|||||++|||||++|+++++.+++|.
T Consensus 92 ~g~~~~g~~~~~e~~~~~h~~~G~lsma~~g~~~~~sqFfIt~~~~~~Ldg~~tvFG~Vi~G~dvl~~I~~~~~~~~~P~ 171 (183)
T PTZ00060 92 GGESIYGRKFTDENFKLKHDQPGLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGKVIEGMEVVRAMEKEGTQSGYPK 171 (183)
T ss_pred CCCcccccccCCccccccCCCCCEEEeccCCCCCCcceEEEEeCCCcccCCCccEEEEEEccHHHHHHHHccCCCCCCCc
Confidence 88888888888888889999999999999999999999999999999999999999999999999999999999888999
Q ss_pred CCeEEeeeeEEe
Q 030245 161 KPVVIADCGIYY 172 (180)
Q Consensus 161 ~~i~I~~cg~l~ 172 (180)
++|+|.+||+|+
T Consensus 172 ~~v~I~~cg~~~ 183 (183)
T PTZ00060 172 KPVVVTDCGELQ 183 (183)
T ss_pred CCeEEEEeEEcC
Confidence 999999999984
No 4
>cd01926 cyclophilin_ABH_like cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain. This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the spl
Probab=100.00 E-value=6.7e-51 Score=309.71 Aligned_cols=164 Identities=79% Similarity=1.313 Sum_probs=151.9
Q ss_pred cEEEEEEEECCEEeEEEEEEEcCCCChHHHHHHHHhhcCCCCCCcCCCceeecCCEEEEeecCcEEEeCCCCCCCCCCCC
Q 030245 4 PKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTAGNGTGGE 83 (180)
Q Consensus 4 p~v~~di~~~~t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~~~~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~ 83 (180)
|+|||||+++++++|+|+||||.+.||++|+||++||.+.++.++ +..+|+++.|||++|+++||+|++...++.++.
T Consensus 1 p~v~~di~i~~~~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~~--~~~~Y~~~~f~Rv~~~~~iq~Gd~~~~~g~~~~ 78 (164)
T cd01926 1 PKVFFDITIGGEPAGRIVMELFADVVPKTAENFRALCTGEKGKGG--KPFGYKGSTFHRVIPDFMIQGGDFTRGNGTGGK 78 (164)
T ss_pred CEEEEEEeECCeeceeEEEEEeCCCCCHHHHHHHHHhcccCCCcc--cccccCCCEEEEEeCCcEEEcCCccCCCCCCCC
Confidence 899999999999999999999999999999999999987554322 345899999999999999999998766677778
Q ss_pred cccCCCCCCCccccCCCCceEEEeeecCCCCCCccEEEEcCCCCCCCCCccEEEEEEcCHHHHHHHHhCCCCCCCCCCCe
Q 030245 84 SIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKKPV 163 (180)
Q Consensus 84 ~~~~~~~~~e~~~~~~~~~G~vs~~~~g~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~p~~~i 163 (180)
++++..+++|...++|+++|+|||++.++++++|||||++++.++||++|+|||||++|||||++|+++++++++|.++|
T Consensus 79 ~~~g~~~~~e~~~~~h~~~G~lsma~~~~~~~~sqFfIt~~~~~~Ld~~~tvFG~V~~G~dvl~~i~~~~~~~~~P~~~i 158 (164)
T cd01926 79 SIYGEKFPDENFKLKHTGPGLLSMANAGPNTNGSQFFITTVKTPWLDGKHVVFGKVVEGMDVVKKIENVGSGNGKPKKKV 158 (164)
T ss_pred cccCCccCCCCccccCCCccEEEeeECCCCCcccEEEEEeCCCCccCCcccEEEEEEEcHHHHHHHHcCCCCCCCCcCCe
Confidence 88888899888889999999999999999999999999999999999999999999999999999999999988999999
Q ss_pred EEeeee
Q 030245 164 VIADCG 169 (180)
Q Consensus 164 ~I~~cg 169 (180)
+|.+||
T Consensus 159 ~I~~cG 164 (164)
T cd01926 159 VIADCG 164 (164)
T ss_pred EEEECC
Confidence 999998
No 5
>KOG0879 consensus U-snRNP-associated cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-51 Score=295.15 Aligned_cols=167 Identities=59% Similarity=1.067 Sum_probs=159.5
Q ss_pred CcEEEEEEEECCEEeEEEEEEEcCCCChHHHHHHHHhhcCCCCCCcCCCceeecCCEEEEeecCcEEEeCCCCCCCCCCC
Q 030245 3 NPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTAGNGTGG 82 (180)
Q Consensus 3 ~p~v~~di~~~~t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~~~~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~ 82 (180)
||.||||+++++..+|||.||||.+.+|+|++||.++|+|+.- ..++..-|++++|||++++|+||+||+..+++++.
T Consensus 10 nPvVF~dv~igg~~~GrikieLFadivPkTAENFRQFCTGE~r--~~g~PiGYK~~tFHRvIkdFMiQgGDFv~gDGtG~ 87 (177)
T KOG0879|consen 10 NPVVFFDVAIGGRPIGRIKIELFADIVPKTAENFRQFCTGEYR--KDGVPIGYKNSTFHRVIKDFMIQGGDFVNGDGTGV 87 (177)
T ss_pred CCeEEEEEeeCCEEcceEEEEEeeccChhhHHHHHhhcccccc--cCCccccccccchHHHhhhheeccCceecCCCceE
Confidence 9999999999999999999999999999999999999999742 22356679999999999999999999999999999
Q ss_pred CcccCCCCCCCccccCCCCceEEEeeecCCCCCCccEEEEcCCCCCCCCCccEEEEEEcCHHHHHHHHhCCCC-CCCCCC
Q 030245 83 ESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSR-SGRTKK 161 (180)
Q Consensus 83 ~~~~~~~~~~e~~~~~~~~~G~vs~~~~g~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~-~~~p~~ 161 (180)
.++|+.+|++|++.++|..+|+||||++|++++|.|||||.+.+.+||++|+|||||++|+.++++|+.+|+- +++|+-
T Consensus 88 ~sIy~~~F~DENFtlkH~~PGlLSMANsG~~tNGCQFFITcakcdfLD~KHVVFGrvldGlli~rkIEnvp~G~NnkPKl 167 (177)
T KOG0879|consen 88 ASIYGSTFPDENFTLKHDGPGLLSMANSGKDTNGCQFFITCAKCDFLDGKHVVFGRVLDGLLIMRKIENVPTGPNNKPKL 167 (177)
T ss_pred EEEcCCCCCCcceeeecCCCceeeccccCCCCCCceEEEEecccccccCceEEEeeeehhhhhhhhhhcCCCCCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998 999999
Q ss_pred CeEEeeeeEE
Q 030245 162 PVVIADCGIY 171 (180)
Q Consensus 162 ~i~I~~cg~l 171 (180)
+|.|..||.+
T Consensus 168 ~v~i~qCGem 177 (177)
T KOG0879|consen 168 PVVIVQCGEM 177 (177)
T ss_pred cEEEeecccC
Confidence 9999999963
No 6
>PLN03149 peptidyl-prolyl isomerase H (cyclophilin H); Provisional
Probab=100.00 E-value=2.5e-50 Score=311.79 Aligned_cols=169 Identities=62% Similarity=1.079 Sum_probs=153.6
Q ss_pred CCCcEEEEEEEECCEEeEEEEEEEcCCCChHHHHHHHHhhcCCCCCCcCCCceeecCCEEEEeecCcEEEeCCCCCCCCC
Q 030245 1 MANPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTAGNGT 80 (180)
Q Consensus 1 ~~~p~v~~di~~~~t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~~~~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~ 80 (180)
|.||+|||||++++++.|+|+||||.+.||++|+||++||+++... .+....|+++.||||+|+++||+|++..+++.
T Consensus 16 ~~~~~v~~di~~~~~~~G~i~ieL~~~~aP~t~~NF~~Lc~g~~~~--~g~~~~Y~~~~fhrVi~~f~iqgGd~~~~~g~ 93 (186)
T PLN03149 16 PKNPVVFFDVTIGGIPAGRIKMELFADIAPKTAENFRQFCTGEFRK--AGLPQGYKGCQFHRVIKDFMIQGGDFLKGDGT 93 (186)
T ss_pred CCCCEEEEEEeeCCcccccEEEEEcCCCCcHHHHHHHHHHhhhccc--cCcccccCCcEEEEEcCCcEEEcCCcccCCCC
Confidence 4689999999999999999999999999999999999999875421 11223499999999999999999998767778
Q ss_pred CCCcccCCCCCCCccccCCCCceEEEeeecCCCCCCccEEEEcCCCCCCCCCccEEEEEE-cCHHHHHHHHhCCCC-CCC
Q 030245 81 GGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFISAGKTEWLDGKHVAFGQVV-EGMNVVKAIEKMGSR-SGR 158 (180)
Q Consensus 81 ~~~~~~~~~~~~e~~~~~~~~~G~vs~~~~g~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi-~G~~vl~~I~~~~~~-~~~ 158 (180)
++.++++..+++|...++|.++|+|||+++++++++|||||++++.|+||++|+|||||+ +||+||++|++++++ +++
T Consensus 94 g~~~~~g~~f~~e~~~~~h~~~G~lsma~~g~~s~~sqFfIt~~~~p~Ldg~~tVFG~Vi~eG~dvl~~I~~~~~~~~~~ 173 (186)
T PLN03149 94 GCVSIYGSKFEDENFIAKHTGPGLLSMANSGPNTNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNR 173 (186)
T ss_pred CcccccCCccCCcccccccCCCCEEEEeeCCCCCcccEEEEECCCCCccCCCceEEEEEEECcHHHHHHHHcCCCCCCCC
Confidence 888888888998888889999999999999999999999999999999999999999999 799999999999996 889
Q ss_pred CCCCeEEeeeeEE
Q 030245 159 TKKPVVIADCGIY 171 (180)
Q Consensus 159 p~~~i~I~~cg~l 171 (180)
|.++|+|.+||++
T Consensus 174 P~~~i~I~~cG~~ 186 (186)
T PLN03149 174 PKLACVISECGEM 186 (186)
T ss_pred CcCCeEEEeCEeC
Confidence 9999999999984
No 7
>PTZ00221 cyclophilin; Provisional
Probab=100.00 E-value=1.6e-49 Score=317.08 Aligned_cols=171 Identities=36% Similarity=0.571 Sum_probs=154.8
Q ss_pred CcEEEEEEEECCEEeEEEEEEEcCCCChHHHHHHHHhhcCCCCCCc-CCCceeecCCEEEEeecC-cEEEeCCCCCCCCC
Q 030245 3 NPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGK-SGKPLHYKGSSFHRVIPG-FMCQGGDFTAGNGT 80 (180)
Q Consensus 3 ~p~v~~di~~~~t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~~~~~-~~~~~~Y~g~~f~rv~~~-~~iq~G~~~~~~~~ 80 (180)
+|+||||+++++++.|+|+||||.+.||+||+||++||+|.++.+. .+....|+|+.||||+++ ++||+||+..
T Consensus 52 ~~rVfldisig~~~~GrIvIELf~d~aP~T~eNF~~Lc~g~~g~~~~~g~k~~Y~gt~FhRVi~~~f~iqgGD~~~---- 127 (249)
T PTZ00221 52 SCRAFLDISIGDVLAGRLVFELFEDVVPETVENFRALITGSCGIDTNTGVKLDYLYTPVHHVDRNNNIIVLGELDS---- 127 (249)
T ss_pred CCEEEEEEeeCCeecceEEEEEeCCCCcHHHHHHHHHhhcccccccccCcccccCCCEEEEEeCCCCEEEeCCCCC----
Confidence 8999999999999999999999999999999999999998876432 233456999999999985 8999999753
Q ss_pred CCCcccCCCCCCCccccCCCCceEEEeeecCCCCCCccEEEEcCCCCCCCCCccEEEEEEcCHHHHHHHHhCCCC-CCCC
Q 030245 81 GGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSR-SGRT 159 (180)
Q Consensus 81 ~~~~~~~~~~~~e~~~~~~~~~G~vs~~~~g~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~-~~~p 159 (180)
.+.+.+|..|++|...++|+++|+|||++.+++++||||||||.++|+||++|+|||||++||+||++|++++++ +++|
T Consensus 128 ~g~s~~G~~f~dE~~~~~h~~~G~LsMan~GpntngSQFfITl~~~p~LDgk~vVFGrVveGmdVv~kIe~v~~d~~grP 207 (249)
T PTZ00221 128 FNVSSTGTPIADEGYRHRHTERGLLTMISEGPHTSGSVFGITLGPSPSLDFKQVVFGKAVDDLSLLEKLESLPLDDVGRP 207 (249)
T ss_pred CCccCCCCcccCccccccCCCCCEEEeCcCCCCCccceEEEECCCCCccCCCceEEEEEEeCHHHHHHHHcCCcCCCCCC
Confidence 234566888999999999999999999999999999999999999999999999999999999999999999986 7899
Q ss_pred CCCeEEeeeeEEeeCCCC
Q 030245 160 KKPVVIADCGIYYYVGVS 177 (180)
Q Consensus 160 ~~~i~I~~cg~l~~~~~~ 177 (180)
.++|+|.+||+|+++...
T Consensus 208 ~~~V~I~~Cgvl~~~~p~ 225 (249)
T PTZ00221 208 LLPVTVSFCGALTGEKPP 225 (249)
T ss_pred CCCeEEEECeEecCCCCC
Confidence 999999999999987764
No 8
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-48 Score=301.34 Aligned_cols=165 Identities=67% Similarity=1.149 Sum_probs=161.7
Q ss_pred CCCcEEEEEEEECCEEeEEEEEEEcCCCChHHHHHHHHhhcCCCCCCcCCCceeecCCEEEEeecCcEEEeCCCCCCCCC
Q 030245 1 MANPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTAGNGT 80 (180)
Q Consensus 1 ~~~p~v~~di~~~~t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~~~~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~ 80 (180)
|+||+||+++.++....|||+++|..+..|++++||..||+|++|+| |+|+.||||+|.|++||||++.++++
T Consensus 134 ~~~pqv~~~ikig~~~~Gri~~~lrtdv~Pmtaenfr~Lctge~gfg-------ykgssfhriip~fmcqggdftn~ngt 206 (298)
T KOG0111|consen 134 MENPQVYHDIKIGEDRAGRIVMLLRTDVVPMTAENFRCLCTGEAGFG-------YKGSSFHRIIPKFMCQGGDFTNGNGT 206 (298)
T ss_pred hhChHhhhheeecccccceEEEeecccCChhhhhhhhhhccccCccC-------ccccchhhhhhhhhccCCccccCCCC
Confidence 67999999999999999999999999999999999999999999987 99999999999999999999999999
Q ss_pred CCCcccCCCCCCCccccCCCCceEEEeeecCCCCCCccEEEEcCCCCCCCCCccEEEEEEcCHHHHHHHHhCCCCCCCCC
Q 030245 81 GGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTK 160 (180)
Q Consensus 81 ~~~~~~~~~~~~e~~~~~~~~~G~vs~~~~g~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~p~ 160 (180)
++.++||.+|.+|++.++|..+|+||||++|+|++||||||++....|||++|+|||.|++||+|++++++.+++.++|.
T Consensus 207 ggksiygkkfddenf~lkht~pgtlsmansgantngsqffict~ktdwldgkhvvfghv~eg~~vvrq~e~qgsksgkp~ 286 (298)
T KOG0111|consen 207 GGKSIYGKKFDDENFTLKHTMPGTLSMANSGANTNGSQFFICTEKTDWLDGKHVVFGHVVEGMNVVRQVEQQGSKSGKPQ 286 (298)
T ss_pred CCcccccccccccceeeecCCCceeeccccCCCCCCceEEEEecccccccCceeEEeeecchHHHHHHHHhccCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEeeeeEEe
Q 030245 161 KPVVIADCGIYY 172 (180)
Q Consensus 161 ~~i~I~~cg~l~ 172 (180)
+.|+|.+||.+.
T Consensus 287 qkv~i~~cge~~ 298 (298)
T KOG0111|consen 287 QKVKIVECGEIE 298 (298)
T ss_pred eEEEEEeccccC
Confidence 999999999873
No 9
>cd01923 cyclophilin_RING cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain. This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal cyclophilin Human cyclophilin A exhibit reduced peptidylprolyl cis- trans isomerase activity and lack a residue important for cyclophilin binding. Human hCyP-60 has been shown to physically interact with the proteinase inhibitor peptide eglin c and; C. elegans MOG-6 to physically interact with MEP-1, a nuclear zinc finger protein. MOG-6 has been shown to function in germline sex determination.
Probab=100.00 E-value=8.3e-47 Score=285.82 Aligned_cols=151 Identities=46% Similarity=0.753 Sum_probs=140.5
Q ss_pred EEeEEEEEEEcCCCChHHHHHHHHhhcCCCCCCcCCCceeecCCEEEEeecCcEEEeCCCCCCCCCCCCcccCCCCCCCc
Q 030245 15 QPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTAGNGTGGESIYGSKFADEN 94 (180)
Q Consensus 15 t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~~~~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~ 94 (180)
|+.|+|+||||.+.||++|+||++|| +.++|+++.|||++|++++|+|++. +++.++.++++..+++|.
T Consensus 6 T~~G~i~ieL~~~~aP~t~~nF~~L~----------~~g~Y~~~~f~rv~~~~~iq~Gd~~-~~g~~~~~~~g~~~~~E~ 74 (159)
T cd01923 6 TNKGDLNLELHCDKAPKACENFIKLC----------KKGYYDGTIFHRSIRNFMIQGGDPT-GTGRGGESIWGKPFKDEF 74 (159)
T ss_pred EccccEEEEEeCCCChHHHHHHHHHH----------hcCccCCcEEEEEeCCcEEEecccC-CCCCCCccccCCccCccc
Confidence 89999999999999999999999999 5678999999999999999999986 567777888888888886
Q ss_pred c-ccCCCCceEEEeeecCCCCCCccEEEEcCCCCCCCCCccEEEEEEcCHHHHHHHHhCCCC-CCCCCCCeEEeeeeEEe
Q 030245 95 F-VKKHTGPGILSMANAGPGTNGSQFFISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSR-SGRTKKPVVIADCGIYY 172 (180)
Q Consensus 95 ~-~~~~~~~G~vs~~~~g~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~-~~~p~~~i~I~~cg~l~ 172 (180)
. .++|+++|+|||+++++++++|||||++++.|+||++|+|||||++|||+|++|++++++ +++|.++|+|.+|+++.
T Consensus 75 ~~~~~h~~~G~v~ma~~~~~s~~sqFfIt~~~~~~Ld~~~~vFG~V~~G~~vl~~I~~~~~~~~~~P~~~i~I~~~~i~~ 154 (159)
T cd01923 75 KPNLSHDGRGVLSMANSGPNTNGSQFFITYRSCKHLDGKHTVFGRVVGGLETLEAMENVPDPGTDRPKEEIKIEDTSVFV 154 (159)
T ss_pred ccCcCcCCCcEEEEeeCCCCCcccEEEEECCCCcccCCCccEEEEEEcCHHHHHHHHcCCCCCCCCCCCCeEEEEeEEEe
Confidence 5 678999999999999999999999999999999999999999999999999999999986 78999999999999999
Q ss_pred eCCC
Q 030245 173 YVGV 176 (180)
Q Consensus 173 ~~~~ 176 (180)
+|-.
T Consensus 155 dpf~ 158 (159)
T cd01923 155 DPFE 158 (159)
T ss_pred CCCC
Confidence 8743
No 10
>KOG0881 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8e-48 Score=273.22 Aligned_cols=152 Identities=51% Similarity=0.825 Sum_probs=145.0
Q ss_pred CcEEEEEEEECCEEeEEEEEEEcCCCChHHHHHHHHhhcCCCCCCcCCCceeecCCEEEEeecCcEEEeCCCCCCCCCCC
Q 030245 3 NPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTAGNGTGG 82 (180)
Q Consensus 3 ~p~v~~di~~~~t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~~~~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~ 82 (180)
-|.|+++ |+.|.|++|||-+.||+||+||.+|+ +.+||+|+.||||+++|+|||||++ +.+.++
T Consensus 9 ~~~V~Le-----TsmG~i~~ElY~kHaP~TC~NF~eLa----------rrgYYn~v~FHRii~DFmiQGGDPT-GTGRGG 72 (164)
T KOG0881|consen 9 PPNVTLE-----TSMGKITLELYWKHAPRTCQNFAELA----------RRGYYNGVIFHRIIKDFMIQGGDPT-GTGRGG 72 (164)
T ss_pred CCeEEEe-----ecccceehhhhhhcCcHHHHHHHHHH----------hcccccceeeeehhhhheeecCCCC-CCCCCc
Confidence 4788888 89999999999999999999999999 8889999999999999999999997 789999
Q ss_pred CcccCCCCCCCcc-ccCCCCceEEEeeecCCCCCCccEEEEcCCCCCCCCCccEEEEEEcCHHHHHHHHhCCCC-CCCCC
Q 030245 83 ESIYGSKFADENF-VKKHTGPGILSMANAGPGTNGSQFFISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSR-SGRTK 160 (180)
Q Consensus 83 ~~~~~~~~~~e~~-~~~~~~~G~vs~~~~g~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~-~~~p~ 160 (180)
.++||.+|++|.. .++|..+|.||||+.|||++||||||||++.++||+++++||||+.||+|+.+|-.+.++ .++|.
T Consensus 73 aSIYG~kF~DEi~~dLkhTGAGILsMANaGPnTNgSQFFiTLAPt~~LDGKHTIFGRV~~Gm~vikr~G~v~Td~~DRPi 152 (164)
T KOG0881|consen 73 ASIYGDKFEDEIHSDLKHTGAGILSMANAGPNTNGSQFFITLAPTQWLDGKHTIFGRVCSGMEVIKRMGMVETDNSDRPI 152 (164)
T ss_pred cccccchhhhhhhhhhcccchhhhhhhccCCCCCCceEEEEecCccccCCcceeehhhhhhHHHHHhhcceecCCCCCCc
Confidence 9999999999988 899999999999999999999999999999999999999999999999999999999998 78999
Q ss_pred CCeEEeeeeE
Q 030245 161 KPVVIADCGI 170 (180)
Q Consensus 161 ~~i~I~~cg~ 170 (180)
.+++|.+.-.
T Consensus 153 ~~~kIika~~ 162 (164)
T KOG0881|consen 153 DEVKIIKAYP 162 (164)
T ss_pred cceeeEeeec
Confidence 9999988754
No 11
>cd01928 Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like. Proteins similar to Human cyclophilin-like peptidylprolyl cis- trans isomerase (PPIL3). Members of this family lack a key residue important for cyclosporin binding: the tryptophan residue corresponding to W121 in human hCyP-18a; most members have a histidine at this position. The exact function of the protein is not known.
Probab=100.00 E-value=9.5e-46 Score=278.36 Aligned_cols=144 Identities=48% Similarity=0.774 Sum_probs=134.1
Q ss_pred EEeEEEEEEEcCCCChHHHHHHHHhhcCCCCCCcCCCceeecCCEEEEeecCcEEEeCCCCCCCCCCCCcccCCCCCCCc
Q 030245 15 QPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTAGNGTGGESIYGSKFADEN 94 (180)
Q Consensus 15 t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~~~~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~ 94 (180)
|+.|+|+||||++.||++|+||++|| +.++|+++.|||++|++++|+|++. +++.++.++++..+++|.
T Consensus 7 T~~G~i~ieL~~~~aP~t~~nF~~L~----------~~g~Y~~~~f~rv~~~f~iq~Gd~~-~~g~g~~~~~~~~~~~e~ 75 (153)
T cd01928 7 TNLGDIKIELFCDDCPKACENFLALC----------ASGYYNGCIFHRNIKGFMVQTGDPT-GTGKGGESIWGKKFEDEF 75 (153)
T ss_pred EccccEEEEEcCCCCcHHHHHHHHHH----------hcCccCCcEEEEeCCCCEEEccccC-CCCCCCCccCCCcccccc
Confidence 89999999999999999999999999 5568999999999999999999986 556677778888898887
Q ss_pred c-ccCCCCceEEEeeecCCCCCCccEEEEcCCCCCCCCCccEEEEEEcCHHHHHHHHhCCCC-CCCCCCCeEEeeee
Q 030245 95 F-VKKHTGPGILSMANAGPGTNGSQFFISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSR-SGRTKKPVVIADCG 169 (180)
Q Consensus 95 ~-~~~~~~~G~vs~~~~g~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~-~~~p~~~i~I~~cg 169 (180)
. .++|+++|+|||+++++++++|||||++++.|+||++|+|||||++|||+|++|++++++ +++|..+|+|.+|.
T Consensus 76 ~~~~~~~~~G~v~ma~~~~~~~~SqFfI~~~~~~~Ld~~~tvFG~V~~G~dvl~~I~~~~~~~~~~P~~~i~I~~~~ 152 (153)
T cd01928 76 RETLKHDSRGVVSMANNGPNTNGSQFFITYAKQPHLDGKYTVFGKVIDGFETLDTLEKLPVDKKYRPLEEIRIKDVT 152 (153)
T ss_pred ccCCCcCCCcEEEEeeCCCCCcccEEEEEeCCCcccCCCceEEEEEEeCHHHHHHHHcCCCCCCCCCcCCeEEEEeE
Confidence 6 678889999999999999999999999999999999999999999999999999999986 78999999999984
No 12
>COG0652 PpiB Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.9e-46 Score=277.42 Aligned_cols=145 Identities=49% Similarity=0.782 Sum_probs=130.8
Q ss_pred CEEeEEEEEEEcCCCChHHHHHHHHhhcCCCCCCcCCCceeecCCEEEEeecCcEEEeCCCCCCCCCCCCcccCCCCCCC
Q 030245 14 GQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTAGNGTGGESIYGSKFADE 93 (180)
Q Consensus 14 ~t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~~~~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e 93 (180)
.|+.|+|+||||++.||+||+||++|| +.++|+|+.||||+|+|+|||||+..+.+.++.. .++++|
T Consensus 5 ~t~~G~I~ieL~~~~aP~Tv~NF~~l~----------~~g~Ydg~~FHRVi~~FmiQgGd~~~~~g~gg~~---~~f~~E 71 (158)
T COG0652 5 ETNKGDITIELYPDKAPKTVANFLQLV----------KEGFYDGTIFHRVIPGFMIQGGDPTGGDGTGGPG---PPFKDE 71 (158)
T ss_pred eccCCCEEEEECCCcCcHHHHHHHHHH----------HcCCCCCceEEEeecCceeecCCCCCCCCCCCCC---CCCccc
Confidence 489999999999999999999999999 6779999999999999999999998765766663 689999
Q ss_pred ccccCCCC--ceEEEeeecC-CCCCCccEEEEcCCCCCCCCCccEEEEEEcCHHHHHHHHhCCCCC-----CCCCCCeEE
Q 030245 94 NFVKKHTG--PGILSMANAG-PGTNGSQFFISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRS-----GRTKKPVVI 165 (180)
Q Consensus 94 ~~~~~~~~--~G~vs~~~~g-~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~-----~~p~~~i~I 165 (180)
.+...|.+ +|+|||||.+ |++++|||||++.+.|+||++|+|||+|++|||+|++|++..+.. ..|..+++|
T Consensus 72 ~~~~~~~~~~~G~lsMA~~g~P~t~~SQFFI~~~~~~~Ld~~ytVFG~Vv~GmdvvdkI~~~~~~~~~~~~~~~~~~~~i 151 (158)
T COG0652 72 NFALNGDRHKRGTLSMARAGDPNSNGSQFFITVVDNPFLDGKYTVFGQVVEGMDVVDKIKNGDTDDSGYVQDVPADPVKI 151 (158)
T ss_pred ccccccccCCcceEeEcccCCcCCccCeEEEEecCCcccCCCCcEEEEEehhHHHHHHHHcCCccCCCcccCCCCCCeEE
Confidence 88887777 9999999999 999999999999999999999999999999999999999976652 356678888
Q ss_pred eeeeEE
Q 030245 166 ADCGIY 171 (180)
Q Consensus 166 ~~cg~l 171 (180)
.+..++
T Consensus 152 ~~~~~~ 157 (158)
T COG0652 152 LSVKIV 157 (158)
T ss_pred eeeeee
Confidence 887764
No 13
>cd01921 cyclophilin_RRM cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM). This subfamily of the cyclophilin domain family contains a number of eukaryotic cyclophilins having the RRM domain including the nuclear proteins: human hCyP-57, Arabidopsis thaliana AtCYP59, Caenorhabditis elegans CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241 protein has been shown to have a role in cell morphogenesis.
Probab=100.00 E-value=2e-45 Score=280.14 Aligned_cols=151 Identities=42% Similarity=0.631 Sum_probs=134.8
Q ss_pred EEeEEEEEEEcCCCChHHHHHHHHhhcCCCCCCcCCCceeecCCEEEEeecCcEEEeCCCCCCCCCCCCcccC-------
Q 030245 15 QPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTAGNGTGGESIYG------- 87 (180)
Q Consensus 15 t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~~~~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~------- 87 (180)
|+.|+|+||||.+.||++|+||++|| +.++|+++.||||+|+++||+|++. .++.++.++++
T Consensus 4 Ts~G~i~ieL~~~~aP~t~~nF~~L~----------~~~~Y~g~~fhrvi~~f~iQgGd~~-~~g~~~~~~~~~~~~~~~ 72 (166)
T cd01921 4 TTLGDLVIDLFTDECPLACLNFLKLC----------KLKYYNFCLFYNVQKDFIAQTGDPT-GTGAGGESIYSQLYGRQA 72 (166)
T ss_pred eccCCEEEEEcCCCCCHHHHHHHHHH----------hcCCcCCCEEEEEeCCceEEECCcC-CCCCCCcccccccccccC
Confidence 89999999999999999999999999 5668999999999999999999986 44555555443
Q ss_pred CCCCCCcc-ccCCCCceEEEeeecCCCCCCccEEEEcCC-CCCCCCCccEEEEEEcCHHHHHHHHhCCCC-CCCCCCCeE
Q 030245 88 SKFADENF-VKKHTGPGILSMANAGPGTNGSQFFISAGK-TEWLDGKHVAFGQVVEGMNVVKAIEKMGSR-SGRTKKPVV 164 (180)
Q Consensus 88 ~~~~~e~~-~~~~~~~G~vs~~~~g~~~~~sqFfI~l~~-~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~-~~~p~~~i~ 164 (180)
..+++|.. .++|+++|+||||+.++++++|||||++++ .++||++|+|||||++|||||++|++++++ +++|.++|+
T Consensus 73 ~~~~~e~~~~~~h~~~G~l~ma~~~~~~~~SQFfIt~~~~~~~Ldg~~tvFG~Vi~G~dvv~~I~~~~~~~~~~P~~~i~ 152 (166)
T cd01921 73 RFFEPEILPLLKHSKKGTVSMVNAGDNLNGSQFYITLGENLDYLDGKHTVFGQVVEGFDVLEKINDAIVDDDGRPLKDIR 152 (166)
T ss_pred cccCcccCCccccCCceEEEEeECCCCCccceEEEEcCCCCcccCCCccEEEEEEcCHHHHHHHHcCCCCCCCCCCCCeE
Confidence 24566654 778999999999999999999999999975 799999999999999999999999999987 789999999
Q ss_pred EeeeeEEeeCCC
Q 030245 165 IADCGIYYYVGV 176 (180)
Q Consensus 165 I~~cg~l~~~~~ 176 (180)
|.+|++|.+|=.
T Consensus 153 I~~~~i~~~pf~ 164 (166)
T cd01921 153 IKHTHILDDPFP 164 (166)
T ss_pred EEEEEEECCCCC
Confidence 999999998754
No 14
>cd01927 cyclophilin_WD40 cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain. This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known.
Probab=100.00 E-value=1.7e-45 Score=275.57 Aligned_cols=142 Identities=50% Similarity=0.809 Sum_probs=132.9
Q ss_pred EEeEEEEEEEcCCCChHHHHHHHHhhcCCCCCCcCCCceeecCCEEEEeecCcEEEeCCCCCCCCCCCCcccCCCCCCCc
Q 030245 15 QPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTAGNGTGGESIYGSKFADEN 94 (180)
Q Consensus 15 t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~~~~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~ 94 (180)
|++|+|+||||.+.||++|+||++|| +.++|+++.|||++|++++|+|++. +++.++.++++..+++|.
T Consensus 4 T~~G~i~ieL~~~~aP~t~~nF~~L~----------~~g~Y~~~~f~Rvi~~f~iq~Gd~~-~~g~g~~~~~~~~~~~e~ 72 (148)
T cd01927 4 TTKGDIHIRLFPEEAPKTVENFTTHA----------RNGYYNNTIFHRVIKGFMIQTGDPT-GDGTGGESIWGKEFEDEF 72 (148)
T ss_pred eccccEEEEEeCCCCcHHHHHHHHHh----------hcCCcCCcEEEEEcCCcEEEecccC-CCCCCCCcccCCcccccc
Confidence 88999999999999999999999999 5668999999999999999999986 567777788888898887
Q ss_pred c-ccCCCCceEEEeeecCCCCCCccEEEEcCCCCCCCCCccEEEEEEcCHHHHHHHHhCCCC-CCCCCCCeEEee
Q 030245 95 F-VKKHTGPGILSMANAGPGTNGSQFFISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSR-SGRTKKPVVIAD 167 (180)
Q Consensus 95 ~-~~~~~~~G~vs~~~~g~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~-~~~p~~~i~I~~ 167 (180)
. .++|.++|+|||++.++++++|||||++++.|+||++|+|||||++|||||++|++++++ +++|.++|+|.+
T Consensus 73 ~~~~~h~~~G~l~ma~~~~~s~~SqFfIt~~~~p~Ldg~~tvFG~V~~G~dvl~~I~~~~~~~~~~P~~~i~I~~ 147 (148)
T cd01927 73 SPSLKHDRPYTLSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVVKGMDVVQRIENVKTDKNDRPYEDIKIIN 147 (148)
T ss_pred ccccCcCCCeEEEEeeCCCCCCCceEEEEcCCCcccCCCceEEEEEEcCHHHHHHHHcCCCCCCCCCcCCeEEEe
Confidence 6 788998999999999999999999999999999999999999999999999999999987 789999999986
No 15
>cd01922 cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2. These proteins bind their respective SNW chromatin binding protein in autologous systems, in a CsA independent manner indicating interaction with a surface outside the PPIase active site. SNW proteins play a basic and broad range role in signaling.
Probab=100.00 E-value=3.6e-45 Score=273.22 Aligned_cols=142 Identities=51% Similarity=0.855 Sum_probs=131.9
Q ss_pred EEeEEEEEEEcCCCChHHHHHHHHhhcCCCCCCcCCCceeecCCEEEEeecCcEEEeCCCCCCCCCCCCcccCCCCCCCc
Q 030245 15 QPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTAGNGTGGESIYGSKFADEN 94 (180)
Q Consensus 15 t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~~~~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~ 94 (180)
|+.|+|+||||.+.||++|+||++|| +.++|+++.|||++|++++|+|++. +++.++.++++..+++|.
T Consensus 4 T~~G~i~ieL~~~~aP~t~~nF~~L~----------~~g~Y~~~~f~Rvi~~f~iq~Gd~~-~~g~~~~~~~~~~~~~e~ 72 (146)
T cd01922 4 TTMGEITLELYWNHAPKTCKNFYELA----------KRGYYNGTIFHRLIKDFMIQGGDPT-GTGRGGASIYGKKFEDEI 72 (146)
T ss_pred eccccEEEEEcCCCCcHHHHHHHHHH----------hcCCcCCcEEEEEcCCcEEEecccC-CCCCCcccccCCCccccc
Confidence 89999999999999999999999999 5678999999999999999999976 456667778888888885
Q ss_pred c-ccCCCCceEEEeeecCCCCCCccEEEEcCCCCCCCCCccEEEEEEcCHHHHHHHHhCCCCCCCCCCCeEEee
Q 030245 95 F-VKKHTGPGILSMANAGPGTNGSQFFISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKKPVVIAD 167 (180)
Q Consensus 95 ~-~~~~~~~G~vs~~~~g~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~p~~~i~I~~ 167 (180)
. .++|.++|+|||++.++++++|||||+++++|+||++|+|||||++|||||++|+++++++++|.++|+|.+
T Consensus 73 ~~~~~h~~~G~l~ma~~~~~s~~sqFfIt~~~~p~Ld~~~tvFG~V~~G~dvl~~I~~~~~~~~~P~~~I~I~~ 146 (146)
T cd01922 73 HPELKHTGAGILSMANAGPNTNGSQFFITLAPTPWLDGKHTIFGRVSKGMKVIENMVEVQTQTDRPIDEVKILK 146 (146)
T ss_pred ccCcCCCCCeEEEEeeCCCCCCccEEEEEcCCCcccCCCCCEEEEEEcCHHHHHHHHhCCCCCCCcCCCeEEeC
Confidence 4 788999999999999999999999999999999999999999999999999999999998889999999963
No 16
>cd01925 cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16. C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase activity, is cyclosporin insensitive and shows an altered substrate preference favoring, hydrophobic, acidic or amide amino acids. Most members of this subfamily have a glutamate residue in the active site at the position equivalent to a tryptophan (W121 in Human cyclophilin A), which has been shown to be important for cyclophilin binding.
Probab=100.00 E-value=2.2e-43 Score=269.92 Aligned_cols=150 Identities=39% Similarity=0.648 Sum_probs=138.3
Q ss_pred EEeEEEEEEEcCCCChHHHHHHHHhhcCCCCCCcCCCceeecCCEEEEeecCcEEEeCCCCCCCCCCCCcccCCCCCCCc
Q 030245 15 QPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTAGNGTGGESIYGSKFADEN 94 (180)
Q Consensus 15 t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~~~~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~ 94 (180)
|++|+|+||||.+.||++|+||++|| +.++|+++.|||++|++++|+|++. +++.++.++++..+++|.
T Consensus 12 Ts~G~i~ieL~~~~~P~t~~nF~~L~----------~~~~Y~~~~f~Rvi~~f~iQgGd~~-~~g~g~~s~~g~~~~~E~ 80 (171)
T cd01925 12 TTAGDIDIELWSKEAPKACRNFIQLC----------LEGYYDNTIFHRVVPGFIIQGGDPT-GTGTGGESIYGEPFKDEF 80 (171)
T ss_pred EccccEEEEEeCCCChHHHHHHHHHH----------hcCCCCCCEEEEEcCCcEEEccccC-CCCccCcccCCCccCccc
Confidence 89999999999999999999999999 5668999999999999999999976 567777888888898887
Q ss_pred c-ccCCCCceEEEeeecCCCCCCccEEEEcCCCCCCCCCccEEEEEE-cCHHHHHHHHhCCCC-CCCCCCCeEEeeeeEE
Q 030245 95 F-VKKHTGPGILSMANAGPGTNGSQFFISAGKTEWLDGKHVAFGQVV-EGMNVVKAIEKMGSR-SGRTKKPVVIADCGIY 171 (180)
Q Consensus 95 ~-~~~~~~~G~vs~~~~g~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi-~G~~vl~~I~~~~~~-~~~p~~~i~I~~cg~l 171 (180)
. .++|+++|+|||++.++++++|||||++++.++||++|+|||||+ ++++++++|++++++ +++|.++|+|.+|+++
T Consensus 81 ~~~~~~~~~G~l~ma~~g~~s~~sqFfIt~~~~~~ldg~~tvFG~V~g~~~~~v~~i~~~~~~~~~~P~~~i~I~~~~i~ 160 (171)
T cd01925 81 HSRLRFNRRGLVGMANAGDDSNGSQFFFTLDKADELNNKHTLFGKVTGDTIYNLLKLAEVETDKDERPVYPPKITSVEVL 160 (171)
T ss_pred ccCcCCCCCcEEEECcCCCCCcccEEEEEcCCCcccCCCceEEEEEEECcHHHHHHHhcCCcCCCCCcCCCeEEEEEEEE
Confidence 6 577899999999999999999999999999999999999999999 468899999999987 7899999999999999
Q ss_pred eeCC
Q 030245 172 YYVG 175 (180)
Q Consensus 172 ~~~~ 175 (180)
.++-
T Consensus 161 ~~pf 164 (171)
T cd01925 161 ENPF 164 (171)
T ss_pred cCCc
Confidence 8764
No 17
>PRK10903 peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional
Probab=100.00 E-value=1.1e-42 Score=269.91 Aligned_cols=151 Identities=32% Similarity=0.546 Sum_probs=130.6
Q ss_pred CcEEEEEEEECCEEeEEEEEEEcCCCChHHHHHHHHhhcCCCCCCcCCCceeecCCEEEEeecCcEEEeCCCCCCCCCCC
Q 030245 3 NPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTAGNGTGG 82 (180)
Q Consensus 3 ~p~v~~di~~~~t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~~~~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~ 82 (180)
+++|.|+ |+.|+|+||||.+.||++|+||++|| +.+||+|+.|||++|+|++|||++....+
T Consensus 28 ~~~v~l~-----T~~G~i~ieL~~~~aP~t~~NF~~L~----------~~g~Ydg~~FhRvi~~f~iQgG~~~~~~~--- 89 (190)
T PRK10903 28 DPHVLLT-----TSAGNIELELNSQKAPVSVKNFVDYV----------NSGFYNNTTFHRVIPGFMIQGGGFTEQMQ--- 89 (190)
T ss_pred CcEEEEE-----eccccEEEEEeCCCCcHHHHHHHHHH----------hcCCcCCcEEEEEeCCceEEeCCcCCCCC---
Confidence 5667666 89999999999999999999999999 66799999999999999999999753221
Q ss_pred CcccCCCCCCCccccCCCCceEEEeeecC-CCCCCccEEEEcCCCCCCCC-----CccEEEEEEcCHHHHHHHHhCCCCC
Q 030245 83 ESIYGSKFADENFVKKHTGPGILSMANAG-PGTNGSQFFISAGKTEWLDG-----KHVAFGQVVEGMNVVKAIEKMGSRS 156 (180)
Q Consensus 83 ~~~~~~~~~~e~~~~~~~~~G~vs~~~~g-~~~~~sqFfI~l~~~~~ld~-----~~~vfG~Vi~G~~vl~~I~~~~~~~ 156 (180)
...++..+.+|.....|+.+|+|||++.+ +++++|||||++++.++||+ +|+|||+|++|||||++|+++++++
T Consensus 90 ~~~~~~~~~~e~~~~l~~~~G~lama~~~~~~sn~SQFfIt~~~~~~ld~~~~dg~ytvFG~V~eG~dvl~~I~~~~~~~ 169 (190)
T PRK10903 90 QKKPNPPIKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHD 169 (190)
T ss_pred CCCCCCcccCcccccCcCCCcEEEeCCCCCCCCcccEEEEECcCcccccCCccCCCccEEEEEecCHHHHHHHHcCCCCC
Confidence 12234567777665567779999999865 89999999999999999984 8999999999999999999998863
Q ss_pred -----CCCCCCeEEeeeeEE
Q 030245 157 -----GRTKKPVVIADCGIY 171 (180)
Q Consensus 157 -----~~p~~~i~I~~cg~l 171 (180)
++|.++|+|.+|+++
T Consensus 170 ~~~~~~~P~~~v~I~~~~v~ 189 (190)
T PRK10903 170 VGPYQNVPSKPVVILSAKVL 189 (190)
T ss_pred CCCCCCcccCCeEEEEEEEe
Confidence 689999999999886
No 18
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-43 Score=290.32 Aligned_cols=153 Identities=44% Similarity=0.719 Sum_probs=146.7
Q ss_pred EEeEEEEEEEcCCCChHHHHHHHHhhcCCCCCCcCCCceeecCCEEEEeecCcEEEeCCCCCCCCCCCCcccCCCCCCCc
Q 030245 15 QPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTAGNGTGGESIYGSKFADEN 94 (180)
Q Consensus 15 t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~~~~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~ 94 (180)
|+.|.+.|||+.+.+|++|+||++|| +++||+|+.|||.+.||+|||||++ +.|.|++++||.+|.+|.
T Consensus 284 Tn~G~lNlELhcd~~P~aceNFI~lc----------~~gYYnnt~FHRsIrnFmiQGGDPT-GTG~GGeSiWgKpFkDEf 352 (518)
T KOG0883|consen 284 TNHGPLNLELHCDYAPRACENFITLC----------KNGYYNNTIFHRSIRNFMIQGGDPT-GTGRGGESIWGKPFKDEF 352 (518)
T ss_pred ccCCceeeEeecCcchHHHHHHHHHH----------hcccccchHHHHHHHHHeeeCCCCC-CCCCCCccccCCcccccc
Confidence 88999999999999999999999999 7889999999999999999999997 789999999999999998
Q ss_pred c-ccCCCCceEEEeeecCCCCCCccEEEEcCCCCCCCCCccEEEEEEcCHHHHHHHHhCCCC-CCCCCCCeEEeeeeEEe
Q 030245 95 F-VKKHTGPGILSMANAGPGTNGSQFFISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSR-SGRTKKPVVIADCGIYY 172 (180)
Q Consensus 95 ~-~~~~~~~G~vs~~~~g~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~-~~~p~~~i~I~~cg~l~ 172 (180)
. .+.|+.||+||||++|||++||||||+..++.+||++|+|||||+.|+++|.+|++++++ +++|+.+|+|.+.-|+.
T Consensus 353 ~~~l~H~gRGvlSMANsGpnTNgSQFFItyrsckhLd~KHTIFGrvVGGldtL~amEnve~d~~DrP~e~I~i~~~~VFV 432 (518)
T KOG0883|consen 353 CSNLSHDGRGVLSMANSGPNTNGSQFFITYRSCKHLDNKHTIFGRVVGGLDTLTAMENVETDEKDRPKEEIKIEDAIVFV 432 (518)
T ss_pred CCCCCcCCcceEeeccCCCCCCCceEEEEecchhhccccceeeeeeeccHHHHHHHhcCCCCCCCCcccceEEeeeEEee
Confidence 7 889999999999999999999999999999999999999999999999999999999999 88999999999999999
Q ss_pred eCCCCC
Q 030245 173 YVGVSK 178 (180)
Q Consensus 173 ~~~~~~ 178 (180)
+|=.|.
T Consensus 433 dPfeEa 438 (518)
T KOG0883|consen 433 DPFEEA 438 (518)
T ss_pred CcHHHH
Confidence 875443
No 19
>PRK10791 peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional
Probab=100.00 E-value=1.2e-41 Score=258.48 Aligned_cols=144 Identities=33% Similarity=0.562 Sum_probs=122.9
Q ss_pred EEeEEEEEEEcCCCChHHHHHHHHhhcCCCCCCcCCCceeecCCEEEEeecCcEEEeCCCCCCCCCCCCcccCCCCCCCc
Q 030245 15 QPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTAGNGTGGESIYGSKFADEN 94 (180)
Q Consensus 15 t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~~~~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~ 94 (180)
|+.|+|+|+||.++||++|+||++|| +.+||+++.||||+|+++||||++..+.+. ..++..+++|.
T Consensus 6 T~~G~i~ieL~~~~aP~t~~nF~~L~----------~~g~Yd~~~fhRvi~~f~iQgGd~~~~~~~---~~~~~~~~~e~ 72 (164)
T PRK10791 6 TNHGDIVIKTFDDKAPETVKNFLDYC----------REGFYNNTIFHRVINGFMIQGGGFEPGMKQ---KATKEPIKNEA 72 (164)
T ss_pred EccccEEEEEeCCCCcHHHHHHHHHH----------hcCCcCCcEEEEEecCcEEEeCCcCCCCCc---CCCCCCcCCcc
Confidence 89999999999999999999999999 667999999999999999999997533221 12345667775
Q ss_pred cccCCCCceEEEeeecC-CCCCCccEEEEcCCCCCCC-------C-CccEEEEEEcCHHHHHHHHhCCCCC-----CCCC
Q 030245 95 FVKKHTGPGILSMANAG-PGTNGSQFFISAGKTEWLD-------G-KHVAFGQVVEGMNVVKAIEKMGSRS-----GRTK 160 (180)
Q Consensus 95 ~~~~~~~~G~vs~~~~g-~~~~~sqFfI~l~~~~~ld-------~-~~~vfG~Vi~G~~vl~~I~~~~~~~-----~~p~ 160 (180)
....++.+|+||||+.+ |++++|||||++++.++|| + +|+|||||++|||||++|++++++. ++|.
T Consensus 73 ~~~~~~~~G~lsma~~~~p~s~~SQFfI~~~~~~~ld~~~~~~d~~~~tvFG~V~eG~dvl~~I~~~~~~~~~~~~~~P~ 152 (164)
T PRK10791 73 NNGLKNTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVEGMDVVDKIKGVATGRSGMHQDVPK 152 (164)
T ss_pred cccccCCCcEEEECCCCCcCCccceEEEEecCchhhcccccccCCCCccEEEEEecCHHHHHHHHcCcCCCCCccCCCcC
Confidence 54444579999999875 9999999999999988776 3 6999999999999999999998863 6899
Q ss_pred CCeEEeeeeEE
Q 030245 161 KPVVIADCGIY 171 (180)
Q Consensus 161 ~~i~I~~cg~l 171 (180)
.+|+|.+|.+.
T Consensus 153 ~~v~I~~~~i~ 163 (164)
T PRK10791 153 EDVIIESVTVS 163 (164)
T ss_pred CCeEEEEEEEe
Confidence 99999999763
No 20
>cd01920 cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E. coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding.
Probab=100.00 E-value=4.2e-41 Score=253.64 Aligned_cols=140 Identities=35% Similarity=0.498 Sum_probs=121.6
Q ss_pred EEeEEEEEEEcCCCChHHHHHHHHhhcCCCCCCcCCCceeecCCEEEEeecCcEEEeCCCCCCCCCCCCcccCCCCCCCc
Q 030245 15 QPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTAGNGTGGESIYGSKFADEN 94 (180)
Q Consensus 15 t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~~~~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~ 94 (180)
|+.|+|+||||.+.||++|+||++|| +.++|+++.||||+|++++|+|++....+. ..++..+.+|.
T Consensus 4 T~~G~i~ieL~~~~aP~t~~nF~~L~----------~~g~Yd~~~fhRvi~~f~iQ~Gd~~~~~~~---~~~~~~~~~e~ 70 (155)
T cd01920 4 TSLGDIVVELYDDKAPITVENFLAYV----------RKGFYDNTIFHRVISGFVIQGGGFTPDLAQ---KETLKPIKNEA 70 (155)
T ss_pred ecceeEEEEEeCCCCcHHHHHHHHHH----------hcCCCCCCEEEEEeCCcEEEeCCCCCCCCc---cccCCcccCcc
Confidence 88999999999999999999999999 667999999999999999999997643222 22345667776
Q ss_pred cccCCCCceEEEeeecC-CCCCCccEEEEcCCCCCCCC-----CccEEEEEEcCHHHHHHHHhCCCCC-----CCCCCCe
Q 030245 95 FVKKHTGPGILSMANAG-PGTNGSQFFISAGKTEWLDG-----KHVAFGQVVEGMNVVKAIEKMGSRS-----GRTKKPV 163 (180)
Q Consensus 95 ~~~~~~~~G~vs~~~~g-~~~~~sqFfI~l~~~~~ld~-----~~~vfG~Vi~G~~vl~~I~~~~~~~-----~~p~~~i 163 (180)
....|+++|+||||+.+ +++++|||||++++.++||+ +|+|||+|++|||||++|++++++. ++|..+|
T Consensus 71 ~~~~~~~~G~v~ma~~~~~~s~~SqFfI~~~~~~~ld~~~~~~~ytvFG~V~eG~dvl~~I~~~~~~~~~~~~~~p~~~v 150 (155)
T cd01920 71 GNGLSNTRGTIAMARTNAPDSATSQFFINLKDNASLDYQNEQWGYTVFGEVTEGMDVVDKIAGVETYSFGSYQDVPVQDV 150 (155)
T ss_pred cccccCCceEEEECCCCCCCCccceEEEECCCchhcCCcccCCCccEEEEEecCHHHHHHHHcCCccCCCCcCCCcCCCe
Confidence 65566789999999965 89999999999999999995 7999999999999999999999873 5888899
Q ss_pred EEee
Q 030245 164 VIAD 167 (180)
Q Consensus 164 ~I~~ 167 (180)
+|.+
T Consensus 151 ~i~~ 154 (155)
T cd01920 151 IIES 154 (155)
T ss_pred EEEE
Confidence 8876
No 21
>PF00160 Pro_isomerase: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; InterPro: IPR002130 Cyclophilin [] is the major high-affinity binding protein in vertebrates for the immunosuppressive drug cyclosporin A (CSA), but is also found in other organisms. It exhibits a peptidyl-prolyl cis-trans isomerase activity (5.2.1.8 from EC) (PPIase or rotamase). PPIase is an enzyme that accelerates protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides []. It is probable that CSA mediates some of its effects via an forming a tight complex with cyclophilin that inhibits the phosphatase activity of calcineurin [], []. Cyclophilin A is a cytosolic and highly abundant protein. The protein belongs to a family of isozymes, including cyclophilins B and C, and natural killer cell cyclophilin-related protein [, , ]. Major isoforms have been found throughout the cell, including the ER, and some are even secreted. The sequences of the different forms of cyclophilin-type PPIases are well conserved. Note: FKBP's, a family of proteins that bind the immunosuppressive drug FK506, are also PPIases, but their sequence is not at all related to that of cyclophilin (see IPR001179 from INTERPRO).; GO: 0003755 peptidyl-prolyl cis-trans isomerase activity, 0006457 protein folding; PDB: 1Z81_A 1IHG_A 1IIP_A 3PMP_B 3O7T_A 2B71_A 1QNG_A 1QNH_A 2HQJ_A 2RMC_G ....
Probab=100.00 E-value=9.4e-41 Score=251.32 Aligned_cols=151 Identities=46% Similarity=0.795 Sum_probs=130.0
Q ss_pred EEEEEECCEEeEEEEEEEcCCCChHHHHHHHHhhcCCCCCCcCCCceeecCCEEEEeecCcEEEeCCCCCCCCCCC-Ccc
Q 030245 7 FFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTAGNGTGG-ESI 85 (180)
Q Consensus 7 ~~di~~~~t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~~~~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~-~~~ 85 (180)
||+|++++ +|+|+||||+++||++|+||++|| +.++|+++.|||++|++++|+|++......+. ...
T Consensus 1 ~~~i~t~~--~G~i~ieL~~~~aP~~~~nF~~l~----------~~~~y~g~~f~ri~~~~~i~~G~~~~~~~~~~~~~~ 68 (155)
T PF00160_consen 1 FVDIETSG--LGRIVIELFGDEAPKTVENFLRLC----------TSGFYDGTKFHRIIPNFVIQGGDPTGNGGYGREDST 68 (155)
T ss_dssp EEEEEETT--EEEEEEEEETTTSHHHHHHHHHHH----------HTTSSTTEBEEEEETTTEEEESSTTTSSSSTSEEBT
T ss_pred CEEEEeCC--ccCEEEEEeCCCCcHHHHhhehhh----------cccccCCceeecccccceeeeeeccCCCCccccccc
Confidence 78888754 999999999999999999999999 44589999999999999999999765433111 122
Q ss_pred cCCCCCCCcc-ccCCCCceEEEeeecC--CCCCCccEEEEcCCCCCCCCCccEEEEEEcCHHHHHHHHhCCCCCCCCCCC
Q 030245 86 YGSKFADENF-VKKHTGPGILSMANAG--PGTNGSQFFISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSGRTKKP 162 (180)
Q Consensus 86 ~~~~~~~e~~-~~~~~~~G~vs~~~~g--~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~p~~~ 162 (180)
.+.++++|.. ...++++|+|+|++.+ +++++|||||+|++.++||++|+|||+|++||++|++|++++++. +|.++
T Consensus 69 ~~~~~~~E~~~~~~~~~~G~v~~~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~-~p~~~ 147 (155)
T PF00160_consen 69 GGEPIPDEFNPSLLKHRRGLVSMARSGKDPNSNGSQFFITLSDAPHLDGKYTVFGRVIEGMDVLDKIEAGPTDE-RPKQD 147 (155)
T ss_dssp TBSCBSSSGBTTSSSSSTTEEEEEBSSSSTTEBSSEEEEESSCGGGGTTTSEEEEEEEEHHHHHHHHHTSBBTT-EBSST
T ss_pred CccccccccccccccccceeeeecccccCCCCCCceEEeeccCCCccccceeeeeEEehhHHHHHHHHCCCCCC-ccCCC
Confidence 3446777874 3344479999999976 889999999999999999999999999999999999999998888 99999
Q ss_pred eEEeeeeE
Q 030245 163 VVIADCGI 170 (180)
Q Consensus 163 i~I~~cg~ 170 (180)
|+|.+|||
T Consensus 148 v~I~~cgv 155 (155)
T PF00160_consen 148 VTISSCGV 155 (155)
T ss_dssp EEEEEEEE
T ss_pred eEEEEeEC
Confidence 99999997
No 22
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.1e-42 Score=286.39 Aligned_cols=148 Identities=45% Similarity=0.756 Sum_probs=141.3
Q ss_pred ECCEEeEEEEEEEcCCCChHHHHHHHHhhcCCCCCCcCCCceeecCCEEEEeecCcEEEeCCCCCCCCCCCCcccCCCCC
Q 030245 12 VGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTAGNGTGGESIYGSKFA 91 (180)
Q Consensus 12 ~~~t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~~~~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~ 91 (180)
+--|+.|+|.|.||+++||+||+||...| ++|||+|..||||+++||||+||++ ++|+|++++||..|+
T Consensus 408 iihtt~gdi~~kl~p~ecpktvenf~th~----------rngyy~~~~fhriik~fmiqtgdp~-g~gtggesiwg~dfe 476 (558)
T KOG0882|consen 408 IIHTTQGDIHIKLYPEECPKTVENFTTHS----------RNGYYDNHTFHRIIKGFMIQTGDPL-GDGTGGESIWGKDFE 476 (558)
T ss_pred EEEecccceEEEecccccchhhhhhhccc----------cCccccCcchHHhhhhheeecCCCC-CCCCCCcccccccch
Confidence 33489999999999999999999999999 8899999999999999999999998 789999999999999
Q ss_pred CCcc-ccCCCCceEEEeeecCCCCCCccEEEEcCCCCCCCCCccEEEEEEcCHHHHHHHHhCCCC-CCCCCCCeEEeeee
Q 030245 92 DENF-VKKHTGPGILSMANAGPGTNGSQFFISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSR-SGRTKKPVVIADCG 169 (180)
Q Consensus 92 ~e~~-~~~~~~~G~vs~~~~g~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~-~~~p~~~i~I~~cg 169 (180)
+|.+ .++|+++-+||||+.|||+||||||||+.+.||||++++|||||+.||||+.+|+++.++ +++|.+++.|.+.-
T Consensus 477 defh~~lrhdrpft~smanag~ntngsqffit~~~tpwld~khtvfgrv~~gm~vvqri~~v~t~k~drp~e~v~iinis 556 (558)
T KOG0882|consen 477 DEFHPNLRHDRPFTVSMANAGPNTNGSQFFITTVPTPWLDGKHTVFGRVTAGMDVVQRIEQVKTDKYDRPYEDVKIINIS 556 (558)
T ss_pred hhcCcccccCCCceEEecccCCCCCCceEEEEecCccccCCcceeEEEEecchhHHhHhhhcccCcCCCCCCceeEEEEe
Confidence 9998 899999999999999999999999999999999999999999999999999999999998 88999999999865
Q ss_pred E
Q 030245 170 I 170 (180)
Q Consensus 170 ~ 170 (180)
+
T Consensus 557 v 557 (558)
T KOG0882|consen 557 V 557 (558)
T ss_pred c
Confidence 3
No 23
>KOG0884 consensus Similar to cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.6e-41 Score=236.69 Aligned_cols=147 Identities=47% Similarity=0.730 Sum_probs=138.6
Q ss_pred EEeEEEEEEEcCCCChHHHHHHHHhhcCCCCCCcCCCceeecCCEEEEeecCcEEEeCCCCCCCCCCCCcccCCCCCCCc
Q 030245 15 QPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTAGNGTGGESIYGSKFADEN 94 (180)
Q Consensus 15 t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~~~~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~ 94 (180)
|..|+|.||||.+.+|++|+||+.+| ...||++|.|||-+|+|++|+|++. ..|.++.+++|.+|++|.
T Consensus 7 t~~gdikiev~~e~tpktce~~l~~~----------~~~~~n~~~~~~~~~~f~v~~~~~~-~tgrgg~siwg~~fede~ 75 (161)
T KOG0884|consen 7 TDVGDIKIEVFCERTPKTCENFLALC----------ASDYYNGCIFHRNIKGFMVQTGDPT-HTGRGGNSIWGKKFEDEY 75 (161)
T ss_pred eccCcEEEEEEecCChhHHHHHHHHh----------hhhhccceeecCCCCCcEEEeCCCC-CCCCCCccccCCcchHHH
Confidence 77899999999999999999999999 4558999999999999999999986 678999999999999998
Q ss_pred c-ccCCCCceEEEeeecCCCCCCccEEEEcCCCCCCCCCccEEEEEEcCHHHHHHHHhCCCC--CCCCCCCeEEeeeeEE
Q 030245 95 F-VKKHTGPGILSMANAGPGTNGSQFFISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSR--SGRTKKPVVIADCGIY 171 (180)
Q Consensus 95 ~-~~~~~~~G~vs~~~~g~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~--~~~p~~~i~I~~cg~l 171 (180)
. .++|+.||+||||+.||++++|||||+.+..|+||-+|++||+||+|+|.|++|++++.+ ..+|..++.|.+..+.
T Consensus 76 ~~~lkh~~rg~vsmanngp~tn~sqffity~kq~hldmkytvfgkvidg~etldele~l~v~~ktyrpl~~~~ik~itih 155 (161)
T KOG0884|consen 76 SEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDITIH 155 (161)
T ss_pred HHHHhhccceeEEcccCCCCCCCceEEEEecCCCccceeEeeeeeeccchhhHHHHhhcccCccccccchheeeeeeEEe
Confidence 8 789999999999999999999999999999999999999999999999999999999998 4799999999988765
Q ss_pred e
Q 030245 172 Y 172 (180)
Q Consensus 172 ~ 172 (180)
-
T Consensus 156 a 156 (161)
T KOG0884|consen 156 A 156 (161)
T ss_pred c
Confidence 3
No 24
>cd00317 cyclophilin cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases. This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP
Probab=100.00 E-value=1.6e-39 Score=242.41 Aligned_cols=141 Identities=58% Similarity=0.913 Sum_probs=126.7
Q ss_pred EEeEEEEEEEcCCCChHHHHHHHHhhcCCCCCCcCCCceeecCCEEEEeecCcEEEeCCCCCCCCCCCCcccCCCCCCCc
Q 030245 15 QPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTAGNGTGGESIYGSKFADEN 94 (180)
Q Consensus 15 t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~~~~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~ 94 (180)
|+.|+|+||||.+.||++|+||++|| +.++|+++.|||++|++++|+|++......+ +.++..+++|.
T Consensus 4 T~~G~i~IeL~~~~~P~~~~nF~~l~----------~~~~Y~~~~f~rv~~~~~iq~Gd~~~~~~~~--~~~~~~~~~E~ 71 (146)
T cd00317 4 TTKGRIVIELYGDEAPKTVENFLSLA----------RGGFYDGTTFHRVIPGFMIQGGDPTGTGGGG--SGPGYKFPDEN 71 (146)
T ss_pred eccCcEEEEEcCCCChHHHHHHHHHH----------hcCCcCCCEEEEEeCCCeEEECCCCCCCCCC--CcCCCccCCcc
Confidence 78899999999999999999999999 4558999999999999999999986443222 34566788888
Q ss_pred cccC-CCCceEEEeeecCCCCCCccEEEEcCCCCCCCCCccEEEEEEcCHHHHHHHHhCCCC-CCCCCCCeEEee
Q 030245 95 FVKK-HTGPGILSMANAGPGTNGSQFFISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSR-SGRTKKPVVIAD 167 (180)
Q Consensus 95 ~~~~-~~~~G~vs~~~~g~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~-~~~p~~~i~I~~ 167 (180)
.... |+++|+|+|++.++++++|||||++++.++||++|+|||||++||++|++|++.+++ +++|.++|+|.+
T Consensus 72 ~~~~~~~~~G~v~~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~~~~P~~~i~I~~ 146 (146)
T cd00317 72 FPLKYHHRRGTLSMANAGPNTNGSQFFITTAPTPHLDGKHTVFGKVVEGMDVVDKIERGDTDENGRPIKPVTISD 146 (146)
T ss_pred ccCcCcCCCcEEEEeeCCCCCcccEEEEECCCCcccCCCceEEEEEeCCHHHHHHHHcCCCCCCCcCcCceEEeC
Confidence 8655 888999999999999999999999999999999999999999999999999999998 899999999974
No 25
>KOG0865 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-40 Score=250.85 Aligned_cols=164 Identities=74% Similarity=1.303 Sum_probs=157.1
Q ss_pred CCCcEEEEEEEECCEEeEEEEEEEcCCCChHHHHHHHHhhcCCCCCCcCCCceeecCCEEEE---eecCcEEEeCCCCCC
Q 030245 1 MANPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHR---VIPGFMCQGGDFTAG 77 (180)
Q Consensus 1 ~~~p~v~~di~~~~t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~~~~~~~~~~~Y~g~~f~r---v~~~~~iq~G~~~~~ 77 (180)
|-||+||||++++++++|++.++|+.+..|+|++||..||+|+++.+ |++..||| ..+++++|+||.+..
T Consensus 1 ~~~~~vf~d~~~~~~p~gr~~~~l~ad~~Pktaenf~al~tgekg~~-------yk~s~fhr~~~~~~~fm~qggDft~h 73 (167)
T KOG0865|consen 1 MVNPTVFFDIAIDGEPLGRIVFELFADKIPKTAENFRALCTGEKGFG-------YKGSCFHRLIPIIPGFMCQGGDFTCH 73 (167)
T ss_pred CCCCeeeeeeeecCccccccceecccccCcchHhhhhhcccCCCccc-------cccchhhhccccccceeeccCccccc
Confidence 77999999999999999999999999999999999999999988764 99999999 344799999999999
Q ss_pred CCCCCCcccCCCCCCCccccCCCCceEEEeeecCCCCCCccEEEEcCCCCCCCCCccEEEEEEcCHHHHHHHHhCCCCCC
Q 030245 78 NGTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSRSG 157 (180)
Q Consensus 78 ~~~~~~~~~~~~~~~e~~~~~~~~~G~vs~~~~g~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~ 157 (180)
+++++.++|+++|++|++.++|..+|.||||+.+|++++|||||+++...|||++++|||+|.+||+++++|+.....++
T Consensus 74 ngtggkSiy~ekF~DenFilkhtgpGiLSmaNagpntngsqffictaktewLdgkhVVfGkv~eGm~iv~a~e~~gs~~g 153 (167)
T KOG0865|consen 74 NGTGGKSIYGEKFDDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMDIVEAMERFGSRNG 153 (167)
T ss_pred CCccceEecccccCCcCcEEecCCCCeeehhhcCCCccccEEEEEccccccccCceeEcCceEcccchhhhhhccCCcCC
Confidence 99999999999999999999999999999999999999999999999889999999999999999999999999999999
Q ss_pred CCCCCeEEeeeeEE
Q 030245 158 RTKKPVVIADCGIY 171 (180)
Q Consensus 158 ~p~~~i~I~~cg~l 171 (180)
++.++|+|.+||.|
T Consensus 154 k~~~~i~i~dcg~l 167 (167)
T KOG0865|consen 154 KTSKKITIADCGQL 167 (167)
T ss_pred cccccEEEecCCcC
Confidence 99999999999975
No 26
>cd01924 cyclophilin_TLP40_like cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40. Compared to the archetypal cyclophilin Human cyclophilin A, these proteins have similar peptidylprolyl cis- trans isomerase activity and reduced affinity for cyclosporin A. Spinach TLP40 has been shown to have a dual function as a folding catalyst and regulator of dephosphorylation.
Probab=100.00 E-value=4.3e-38 Score=241.51 Aligned_cols=128 Identities=32% Similarity=0.518 Sum_probs=108.6
Q ss_pred CEEeEEEEEEEcCCCChHHHHHHHHhhcCCCCCCcCCCceeecCCEEEEeecCcEEEeCCCCCCCC--------------
Q 030245 14 GQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTAGNG-------------- 79 (180)
Q Consensus 14 ~t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~~~~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~-------------- 79 (180)
.|+.|+|+||||++.||++|+||++|| +.++|+++.||||+|++++|+|++...+.
T Consensus 3 ~T~~G~i~ieL~~~~aP~t~~NF~~L~----------~~g~Ydg~~FhRVi~~fviQgGdp~~~~~~~~~~~~~~~~~~p 72 (176)
T cd01924 3 ATDNGTITIVLDGYNAPVTAGNFVDLV----------ERGFYDGMEFHRVEGGFVVQTGDPQGKNPGFPDPETGKSRTIP 72 (176)
T ss_pred ccccceEEEEEcCCCCCHHHHHHHHHH----------HhCCcCCCEEEEecCCcEEEecCCCCCCCCccccccccccccc
Confidence 488999999999999999999999999 67799999999999999999999864311
Q ss_pred ------CCCCcccCCCC-----CCCccccCCCCceEEEeeecC--CCCCCccEEEEcC-------CCCCCCCCccEEEEE
Q 030245 80 ------TGGESIYGSKF-----ADENFVKKHTGPGILSMANAG--PGTNGSQFFISAG-------KTEWLDGKHVAFGQV 139 (180)
Q Consensus 80 ------~~~~~~~~~~~-----~~e~~~~~~~~~G~vs~~~~g--~~~~~sqFfI~l~-------~~~~ld~~~~vfG~V 139 (180)
..+.+.++..+ .++...+.|+++|+|||++++ +++++|||||+++ +.++||++|+|||||
T Consensus 73 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laMa~~~~~~ns~~SQFfI~~~~~~~~~~~~~~Ldg~ytVFG~V 152 (176)
T cd01924 73 LEIKPEGQKQPVYGKTLEEAGRYDEQPVLPFNAFGAIAMARTEFDPNSASSQFFFLLKDNELTPSRNNVLDGRYAVFGYV 152 (176)
T ss_pred ceecccCCCCCccCcccccccccccccccccCCCCeEEEccCCCCCCCccceEEEEeccccccCCCCCccCCCceEEEEE
Confidence 01223343333 244556788889999999987 7999999999998 789999999999999
Q ss_pred EcCHHHHHHHHh
Q 030245 140 VEGMNVVKAIEK 151 (180)
Q Consensus 140 i~G~~vl~~I~~ 151 (180)
++|||||++|+.
T Consensus 153 veG~dvl~~I~~ 164 (176)
T cd01924 153 TDGLDILRELKV 164 (176)
T ss_pred ecCHHHHHhhcC
Confidence 999999999976
No 27
>KOG0885 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.1e-37 Score=252.14 Aligned_cols=149 Identities=40% Similarity=0.675 Sum_probs=139.8
Q ss_pred EEeEEEEEEEcCCCChHHHHHHHHhhcCCCCCCcCCCceeecCCEEEEeecCcEEEeCCCCCCCCCCCCcccCCCCCCCc
Q 030245 15 QPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTAGNGTGGESIYGSKFADEN 94 (180)
Q Consensus 15 t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~~~~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~ 94 (180)
|+.|+|.||||+..||++|+||++|| ..+||+|+.|||++|+|.+|||++. ++++|+.++||.+|.+|.
T Consensus 19 TT~G~I~iELW~kE~P~acrnFiqKO----------Gegyy~nt~fhrlvp~f~~Qggdp~-~~gtGgesiyg~~fadE~ 87 (439)
T KOG0885|consen 19 TTKGDIDIELWAKECPKACRNFIQLC----------LEGYYDNTEFHRLVPGFLVQGGDPT-GTGTGGESIYGRPFADEF 87 (439)
T ss_pred eccCceeeeehhhhhhHHHHHHHHHH----------HhccccCceeeeeccchhcccCCCC-CCCCCccccccccchhhc
Confidence 88999999999999999999999999 6789999999999999999999996 789999999999999998
Q ss_pred c-ccCCCCceEEEeeecCCCCCCccEEEEcCCCCCCCCCccEEEEEE-cCHHHHHHHHhCCCC-CCCCCCCeEEeeeeEE
Q 030245 95 F-VKKHTGPGILSMANAGPGTNGSQFFISAGKTEWLDGKHVAFGQVV-EGMNVVKAIEKMGSR-SGRTKKPVVIADCGIY 171 (180)
Q Consensus 95 ~-~~~~~~~G~vs~~~~g~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi-~G~~vl~~I~~~~~~-~~~p~~~i~I~~cg~l 171 (180)
+ +++++++|+|+||+.+.+.||||||+||++.|+|++++++||+|+ +-+-.+-+|..+.++ +.+|..+-+|.+|.|+
T Consensus 88 h~Rlrf~rrGlvgmana~~~~ngsqFfftl~~~~el~nk~tiFGKVtGdtIYn~lri~e~eida~~Rp~~p~kI~s~EV~ 167 (439)
T KOG0885|consen 88 HPRLRFNRRGLVGMANAGNDDNGSQFFFTLGDTPELNNKHTIFGKVTGDTIYNMLRISEVEIDADDRPVDPPKIKSVEVL 167 (439)
T ss_pred CcceeeeccceeeecccCCCCCCceEEEEecCChHhcccCceeeeecchhhhhhhhhcccccccccCCCCccceeeeEee
Confidence 8 889999999999999999999999999999999999999999998 456677888888887 8899999999999998
Q ss_pred eeC
Q 030245 172 YYV 174 (180)
Q Consensus 172 ~~~ 174 (180)
..+
T Consensus 168 ~np 170 (439)
T KOG0885|consen 168 INP 170 (439)
T ss_pred cCc
Confidence 643
No 28
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-36 Score=248.28 Aligned_cols=149 Identities=42% Similarity=0.638 Sum_probs=138.6
Q ss_pred EEeEEEEEEEcCCCChHHHHHHHHhhcCCCCCCcCCCceeecCCEEEEeecCcEEEeCCCCCCCCCCCCcccCC------
Q 030245 15 QPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTAGNGTGGESIYGS------ 88 (180)
Q Consensus 15 t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~~~~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~------ 88 (180)
|++|+|+|+||-+.+|.+|.||++|| +..||+.|.||-|..+|.+|.||++ +.|.|+.++|+.
T Consensus 7 TtlGDlvIDLf~~erP~~clNFLKLC----------k~KYYN~clfh~vq~~f~aQTGDPt-GtG~GG~si~~~lyG~q~ 75 (479)
T KOG0415|consen 7 TTLGDLVIDLFVKERPRTCLNFLKLC----------KIKYYNFCLFHTVQRDFTAQTGDPT-GTGDGGESIYGVLYGEQA 75 (479)
T ss_pred eecccEEeeeecccCcHHHHHHHHHH----------hHhhcccceeeeccccceeecCCCC-CCCCCcceeeeecccccc
Confidence 89999999999999999999999999 7889999999999999999999998 588999998863
Q ss_pred -CCCCCcc-ccCCCCceEEEeeecCCCCCCccEEEEcCCC-CCCCCCccEEEEEEcCHHHHHHHHhCCCC-CCCCCCCeE
Q 030245 89 -KFADENF-VKKHTGPGILSMANAGPGTNGSQFFISAGKT-EWLDGKHVAFGQVVEGMNVVKAIEKMGSR-SGRTKKPVV 164 (180)
Q Consensus 89 -~~~~e~~-~~~~~~~G~vs~~~~g~~~~~sqFfI~l~~~-~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~-~~~p~~~i~ 164 (180)
.|+.|.. .++|.+.|+|||++.|.|.+||||||||+++ ..||++|+|||+|++|||+|.+|+..-++ +++|.++|+
T Consensus 76 rffeaE~~p~l~Hsk~G~vsmvs~g~n~~gSQF~iTlgenLdyLDg~htvfGqV~EG~dtl~kiNea~vD~~~rPykdIR 155 (479)
T KOG0415|consen 76 RFFEAEFLPKLKHSKMGTVSMVSAGENLNGSQFFITLGENLDYLDGKHTVFGQVAEGFDTLTKINEAIVDPKNRPYKDIR 155 (479)
T ss_pred hhhhhhhcccccccccceEEeecCCcccccceEEEEccccccccccccceeeehhhhHHHHHHHHHHhcCCCCCccccee
Confidence 2456655 8899999999999999999999999999876 89999999999999999999999998777 899999999
Q ss_pred EeeeeEEeeC
Q 030245 165 IADCGIYYYV 174 (180)
Q Consensus 165 I~~cg~l~~~ 174 (180)
|.+.-+|+||
T Consensus 156 I~HTiiLdDP 165 (479)
T KOG0415|consen 156 IKHTIILDDP 165 (479)
T ss_pred eeeeEEecCC
Confidence 9999999976
No 29
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.89 E-value=6.9e-06 Score=70.43 Aligned_cols=149 Identities=19% Similarity=0.218 Sum_probs=117.1
Q ss_pred EEEEEEcCCCChHHHHHHHHhhcCCCCCCcCCCceeecCCEEEEeecCcEEEeCCCCCCCCCCC--CcccCC---CCCC-
Q 030245 19 RIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTAGNGTGG--ESIYGS---KFAD- 92 (180)
Q Consensus 19 ~i~ieL~~~~aP~~~~nF~~l~~g~~~~~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~--~~~~~~---~~~~- 92 (180)
.|.|+|+.+-+|.-++-|..+| ..+++++..|.||...+++|.||..-....++ +.+.++ .+++
T Consensus 113 ~IAVs~~~sg~i~VvD~~~d~~----------q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~ 182 (558)
T KOG0882|consen 113 LIAVSLFKSGKIFVVDGFGDFC----------QDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRT 182 (558)
T ss_pred eEEeecccCCCcEEECCcCCcC----------ccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccc
Confidence 8999999999999999999999 67789999999999999999998643322222 111111 1232
Q ss_pred -CccccCCCCceEEEeeecCCCCCCccEEEEcCCCCCCCCCccEEEEEEcCHHHHHHHHhCCCC-CCCCCCCeEEeeeeE
Q 030245 93 -ENFVKKHTGPGILSMANAGPGTNGSQFFISAGKTEWLDGKHVAFGQVVEGMNVVKAIEKMGSR-SGRTKKPVVIADCGI 170 (180)
Q Consensus 93 -e~~~~~~~~~G~vs~~~~g~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~-~~~p~~~i~I~~cg~ 170 (180)
....++|. .-++.+.+......+-+|++.-...+.+..+..|+|++.++-++++.|....++ ...|+.++.|.+..+
T Consensus 183 ~l~~~~K~e-TdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~Vel 261 (558)
T KOG0882|consen 183 NLNFELKHE-TDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVEL 261 (558)
T ss_pred ccccccccc-chhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeeh
Confidence 23356665 567777776666778899999999999999999999999999999999999888 678999999999887
Q ss_pred EeeCCCCC
Q 030245 171 YYYVGVSK 178 (180)
Q Consensus 171 l~~~~~~~ 178 (180)
..+=..|+
T Consensus 262 gRRmaver 269 (558)
T KOG0882|consen 262 GRRMAVER 269 (558)
T ss_pred hhhhhHHh
Confidence 76555444
No 30
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=96.75 E-value=0.012 Score=51.62 Aligned_cols=102 Identities=21% Similarity=0.342 Sum_probs=63.5
Q ss_pred EEEEEEcCCCChHHHHHHHHhhcCCCCCCcCCCceeecCCEEEEeecCcEEEeCCCCCCCCCCCCcccCCCCCCCccccC
Q 030245 19 RIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTAGNGTGGESIYGSKFADENFVKK 98 (180)
Q Consensus 19 ~i~ieL~~~~aP~~~~nF~~l~~g~~~~~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~~~~~ 98 (180)
.+.+||.++ ||.++++|+.+.. .+++. +.+. .+-+|. .....+...+.|+...
T Consensus 202 y~evE~~~~-~p~s~EH~la~~~----------~G~~~---Vd~~-tsTfi~-----------d~~L~g~~~p~En~~~- 254 (503)
T TIGR03268 202 YVEVELDPN-APVSVEHFLALME----------DGTFR---VDYR-TSTFIS-----------DDSLRGLDKPEENIEK- 254 (503)
T ss_pred EEEEEEcCC-CChhHHHHHHHHh----------CCeEE---Eeee-ecceEe-----------cccccCccCCccccCc-
Confidence 567788777 8999999999983 22221 1111 111111 0111233344444332
Q ss_pred CCCceEEEeeecCCCCCCccEEEEcCCCCCCCCCccEEEEEEcCHHHHHHHHh
Q 030245 99 HTGPGILSMANAGPGTNGSQFFISAGKTEWLDGKHVAFGQVVEGMNVVKAIEK 151 (180)
Q Consensus 99 ~~~~G~vs~~~~g~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~ 151 (180)
..+|+|++.+.|.+ ....||-..+.+. .-.|+|+|+|+.|||+++--+.
T Consensus 255 -R~rGtVTVRn~G~G--~G~VYIYredr~s-s~sHtvVG~V~~GiELid~a~~ 303 (503)
T TIGR03268 255 -RRRGAVTVRNSGVG--EGRVYIYREDRPS-SLSHNVVGHVTRGIELIDIAQE 303 (503)
T ss_pred -ccceeEEEEeeccC--ceeEEEEcCCCCC-CcccceeEEEecceeeeecccC
Confidence 33899999998754 3578888877653 2358999999999999875444
No 31
>PRK00969 hypothetical protein; Provisional
Probab=96.68 E-value=0.013 Score=51.54 Aligned_cols=102 Identities=21% Similarity=0.348 Sum_probs=63.8
Q ss_pred EEEEEEcCCCChHHHHHHHHhhcCCCCCCcCCCceeecCCEEEEeecCcEEEeCCCCCCCCCCCCcccCCCCCCCccccC
Q 030245 19 RIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTAGNGTGGESIYGSKFADENFVKK 98 (180)
Q Consensus 19 ~i~ieL~~~~aP~~~~nF~~l~~g~~~~~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~~~~~ 98 (180)
.+.+||.++ ||.++++|+.+.. .+.+. +.+. .+-+|. .....+...+.|+...
T Consensus 205 y~eve~~~~-~p~s~EH~la~~~----------~G~f~---Vd~~-tstfI~-----------d~~L~g~~~p~En~~~- 257 (508)
T PRK00969 205 YVEVELDPG-APKSVEHFLALLE----------DGTFE---VDFE-TSTFIA-----------DDRLQGLKIPEENFEP- 257 (508)
T ss_pred EEEEEEcCC-CCchHHHHHHHHh----------CCeEE---Eeee-ecceEe-----------eccccCccCCccccCc-
Confidence 567788877 7999999999983 22221 1111 111111 0111133344444433
Q ss_pred CCCceEEEeeecCCCCCCccEEEEcCCCCCCCCCccEEEEEEcCHHHHHHHHh
Q 030245 99 HTGPGILSMANAGPGTNGSQFFISAGKTEWLDGKHVAFGQVVEGMNVVKAIEK 151 (180)
Q Consensus 99 ~~~~G~vs~~~~g~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~ 151 (180)
.++|+|++.+.|.+ ....||-..+.+. .-.|+|+|+|+.|||+++--.+
T Consensus 258 -R~~GtVTVRt~G~g--~G~vYIyredr~s-s~sHtvVG~V~~GiELi~~a~~ 306 (508)
T PRK00969 258 -RRRGTVTVRTAGVG--VGKVYIYREDRPS-SLSHTVVGRVTHGIELIDFAKE 306 (508)
T ss_pred -cccceEEEEeeccC--ceeEEEECCCCCC-CccceeEEEEecceeeeecccC
Confidence 33899999998654 3578998877653 2358999999999999875443
No 32
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=96.62 E-value=0.0095 Score=50.80 Aligned_cols=103 Identities=25% Similarity=0.414 Sum_probs=65.8
Q ss_pred EEEEEEEcCCCChHHHHHHHHhhcCCCCCCcCCCceeecCCEEEEeecCcEEEeCCCCCCCCCCCCcccCCCCCCCcccc
Q 030245 18 GRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTAGNGTGGESIYGSKFADENFVK 97 (180)
Q Consensus 18 G~i~ieL~~~~aP~~~~nF~~l~~g~~~~~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~~~~ 97 (180)
=.+.+||.+. +|+++++|+.|.. +|..=.....|-++. + .+....+.+.|+..+
T Consensus 203 Ty~eve~s~n-sP~saEH~lalme--------------dG~lri~~~tntfis--~---------~~lq~~~~~~en~d~ 256 (512)
T COG4070 203 TYFEVELSRN-SPKSAEHFLALME--------------DGTLRIDVTTNTFIS--D---------DTLQEEKVPEENFDL 256 (512)
T ss_pred EEEEEEeCCC-CchhHHHHHHHhh--------------cceEEEEEeccceee--c---------cccccccCChhhhhh
Confidence 3678888887 7999999999982 222222223333322 1 111233455555554
Q ss_pred CCCCceEEEeeecCCCCCCccEEEEcCCCCCCCCCccEEEEEEcCHHHHHHHHh
Q 030245 98 KHTGPGILSMANAGPGTNGSQFFISAGKTEWLDGKHVAFGQVVEGMNVVKAIEK 151 (180)
Q Consensus 98 ~~~~~G~vs~~~~g~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~ 151 (180)
. .+|.|+..+.|-+ ...-||--.+.+.- -.|.|+|||++||++++--..
T Consensus 257 R--erG~iTvRn~Gvg--eGrvYIyRedR~ss-~sHnvVGrV~eGiELid~a~e 305 (512)
T COG4070 257 R--ERGAITVRNVGVG--EGRVYIYREDRPSS-LSHNVVGRVIEGIELIDLAEE 305 (512)
T ss_pred h--hcceEEEEeeecc--cceEEEEecCCCCc-cccceeeeeecceEEEEeccc
Confidence 4 3899999987643 34778877665432 358899999999999876554
No 33
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=96.59 E-value=0.028 Score=49.31 Aligned_cols=113 Identities=25% Similarity=0.373 Sum_probs=66.7
Q ss_pred EEEEEEcCCCChHHHHHHHHhhcCCCCCCcCCCceeecCCEEEEeecCcEEEeCCCCCCCCCCCCcccCCCCCCCccccC
Q 030245 19 RIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTAGNGTGGESIYGSKFADENFVKK 98 (180)
Q Consensus 19 ~i~ieL~~~~aP~~~~nF~~l~~g~~~~~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~~~~~ 98 (180)
-|.|+||.+.||.++..|.++. |-.. +. ==-..+|=..++..+.=|+. .+...+.+|+..-.
T Consensus 376 vi~IeLydd~AP~s~~yFRk~t-GL~~-----~~--VG~L~v~F~~~d~~mFk~~~----------~~~k~LiPEN~P~~ 437 (503)
T TIGR03268 376 VIEIELYDDNAPRSVWYFRKFT-GLKT-----KP--VGRLPVHFAFKEMIMFKGNK----------ELAKGLIPENTPED 437 (503)
T ss_pred EEEEEEcccCCchHHHHHHHhc-CCcc-----cc--cceeEEEEEeCCeeEeccCc----------hhccccCCCCCCCC
Confidence 6899999999999999999876 2110 00 00124555556654442222 22345566666555
Q ss_pred CCCceEEEeeecCCCCCCccEEEEcCCC-------CCCCCCccEEEEEEcCHHHHHHHHh
Q 030245 99 HTGPGILSMANAGPGTNGSQFFISAGKT-------EWLDGKHVAFGQVVEGMNVVKAIEK 151 (180)
Q Consensus 99 ~~~~G~vs~~~~g~~~~~sqFfI~l~~~-------~~ld~~~~vfG~Vi~G~~vl~~I~~ 151 (180)
...+|.|++-|......| -.=|-|.++ ..+++.+ ++|+|+++++.|+++..
T Consensus 438 ~V~ag~IgvTN~a~k~~G-~IGVRl~d~defGPTGE~F~gTN-IiG~Vv~~~e~Lk~~Ke 495 (503)
T TIGR03268 438 KVEAGVIGVTNQACKHVG-MIGVRLEDSDEFGPTGEPFSGTN-IIGRVVEGMERLKGLKE 495 (503)
T ss_pred ccccceEeeechhhhcCc-eEEEEccCCcccCCCCCCccCcc-eEEEecCChhHhccccc
Confidence 556888888775321111 112223332 2445544 68999999999988765
No 34
>PF12903 DUF3830: Protein of unknown function (DUF3830); InterPro: IPR024532 This is a family of bacterial and archaeal proteins. The structure of one of family members, A0JVT3 from SWISSPROT, has been characterised and shown to contain a cyclophilin-like fold.; PDB: 3KOP_B.
Probab=96.06 E-value=0.043 Score=40.88 Aligned_cols=109 Identities=20% Similarity=0.209 Sum_probs=56.1
Q ss_pred EEEEEEEcCCCChHHHHHHHHhhcCCCCCCcCCCceeecCCEEEEeecC--cEEEeCCCCCCCCCCCCcccCCCCCCCcc
Q 030245 18 GRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPG--FMCQGGDFTAGNGTGGESIYGSKFADENF 95 (180)
Q Consensus 18 G~i~ieL~~~~aP~~~~nF~~l~~g~~~~~~~~~~~~Y~g~~f~rv~~~--~~iq~G~~~~~~~~~~~~~~~~~~~~e~~ 95 (180)
-.++.+|..|.||+||+.|.+.- =|.+..+|-...+ .++.-+++. ......|+.
T Consensus 8 ~~~~A~l~~d~AP~Tcaa~~~~L-------------P~~~~~~HarwSG~ei~~~l~~~~-----------~~~~~~EN~ 63 (147)
T PF12903_consen 8 VSFTARLLDDKAPKTCAAFWEAL-------------PLKGKVIHARWSGEEIWIPLPDFD-----------PFEPGRENH 63 (147)
T ss_dssp EEEEEEE-TTTSHHHHHHHHHH---------------EEEE-EE-SSSSSEEEEEEE--S-----------SS---S-SE
T ss_pred eEEEEEEcccCChHHHHHHHHhC-------------CCCCcEEEEEEECcEEEEECCCcC-----------cCCCCCCcC
Confidence 36899999999999999999987 2666677766554 344444432 012233444
Q ss_pred ccCCCCceEEEee--e-cCCC--CC-CccEEEEcCCCCC-CCC-----CccEEEEEEcCHHHHHHHHh
Q 030245 96 VKKHTGPGILSMA--N-AGPG--TN-GSQFFISAGKTEW-LDG-----KHVAFGQVVEGMNVVKAIEK 151 (180)
Q Consensus 96 ~~~~~~~G~vs~~--~-~g~~--~~-~sqFfI~l~~~~~-ld~-----~~~vfG~Vi~G~~vl~~I~~ 151 (180)
.... .+|-|.+. . ...+ .. =++.-|..+-..- +.+ .-.+|++|++|+|-|.++.+
T Consensus 64 T~~P-~pGdi~~~y~~~~~~~~~pg~~~e~~i~yg~g~~~f~~~~G~l~GN~FatI~egle~la~~~~ 130 (147)
T PF12903_consen 64 TVTP-IPGDILLYYEPGSAWGGNPGGISETEIFYGYGNLLFASKMGWLPGNHFATITEGLEELAEACR 130 (147)
T ss_dssp ESS---TTEEEEE-----------E-EEEEEEE-SSS---EETTTEE--EEEEEEEEESHHHHHHHHH
T ss_pred cccC-CCCcEEEEecCCccccCCCcceEEEEEEEeeCceEecCCccccceeEEEEEcCCHHHHHHHHH
Confidence 3333 37777776 1 1111 11 1344444433221 111 13579999999997777765
No 35
>PRK00969 hypothetical protein; Provisional
Probab=95.31 E-value=0.12 Score=45.66 Aligned_cols=109 Identities=16% Similarity=0.175 Sum_probs=68.6
Q ss_pred EEeEEEEEEEcCCCChHHHHHHHHhhcCCCCCCcCCCceeecCCEEEEeecCcEEEeCCCCCCCCCCCCcccCCCCCCCc
Q 030245 15 QPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTAGNGTGGESIYGSKFADEN 94 (180)
Q Consensus 15 t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~~~~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~ 94 (180)
|+.|.|+|||. .+..++..++..+. -|.|..++=..+ ..+.+|.+.. .++++.
T Consensus 57 TtkG~i~Iel~--~~~~~~~~w~e~yk------------~~e~~~i~W~s~-~~vAfGp~~s------------~l~p~~ 109 (508)
T PRK00969 57 TTKGEIVIELT--EENESVDFWLENYK------------EFEGKSLRWTSR-SAVAFGPFES------------DLEPSR 109 (508)
T ss_pred ccCceEEEEEc--cCcchhhHHHHhHH------------hhcCCceEeccc-cceeEccccc------------Cccccc
Confidence 88999999999 34556666666552 245555443333 3344454321 122222
Q ss_pred cccCCCCceEEEeeecCCCCCCccEEEEcCCCCCCCCC--ccEEEEEEcCHHHHHHHHh
Q 030245 95 FVKKHTGPGILSMANAGPGTNGSQFFISAGKTEWLDGK--HVAFGQVVEGMNVVKAIEK 151 (180)
Q Consensus 95 ~~~~~~~~G~vs~~~~g~~~~~sqFfI~l~~~~~ld~~--~~vfG~Vi~G~~vl~~I~~ 151 (180)
... ...++-|.+.-+|=+...+.+.|+..++...-+- --+||+|+.|..+|++|..
T Consensus 110 ~~~-~y~r~DV~lg~~G~dp~~thLIfsk~~h~a~YG~p~~gv~grVi~Gk~vl~~L~~ 167 (508)
T PRK00969 110 EEY-EYERWDVVLSLSGFDPSETHLIFSKRDHSADYGAPNDGVIGRVVGGKRVLDRLTD 167 (508)
T ss_pred Ccc-eeecccEEEEccCCCCCCceEEEEecchhhhhCCCCCCceEEEccchhhHhhccC
Confidence 222 2337888888888777777888887776322111 1799999999999999976
No 36
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=94.67 E-value=0.13 Score=44.09 Aligned_cols=112 Identities=21% Similarity=0.291 Sum_probs=59.5
Q ss_pred EEEEEEcCCCChHHHHHHHHhhcCC-CCCCcCCCceeecCCEEEEeecCcE--EEeCCCCCCCCCCCCcccCCCCCCCcc
Q 030245 19 RIVMELFADVTPRTAENFRALCTGE-KGIGKSGKPLHYKGSSFHRVIPGFM--CQGGDFTAGNGTGGESIYGSKFADENF 95 (180)
Q Consensus 19 ~i~ieL~~~~aP~~~~nF~~l~~g~-~~~~~~~~~~~Y~g~~f~rv~~~~~--iq~G~~~~~~~~~~~~~~~~~~~~e~~ 95 (180)
-|.||||.+.||.++..|.++..-. +..| ...+|-+.++.. +.=|+. .++..+.+|+.
T Consensus 377 iieIELyed~APrSv~yFRr~t~l~~kpVG---------kL~Vhfay~d~~~vmfegn~----------~~~K~llPEN~ 437 (512)
T COG4070 377 IIEIELYEDRAPRSVWYFRRSTGLKTKPVG---------KLKVHFAYDDTYLVMFEGNA----------VLAKGLLPENT 437 (512)
T ss_pred EEEEEecCCCCchhhHHHHhhccccccccc---------ceEEEEEeCCceEEEEcCCh----------HHhccCCCCCC
Confidence 5899999999999999999876211 1111 234555555521 111221 12334445555
Q ss_pred ccCCCCceEEEeeecCCCCCCccEEEEcCCC-------CCCCCCccEEEEEEcCHHHHHHHHh
Q 030245 96 VKKHTGPGILSMANAGPGTNGSQFFISAGKT-------EWLDGKHVAFGQVVEGMNVVKAIEK 151 (180)
Q Consensus 96 ~~~~~~~G~vs~~~~g~~~~~sqFfI~l~~~-------~~ld~~~~vfG~Vi~G~~vl~~I~~ 151 (180)
......+|.|+..|....-.| -.-+-|.++ ..+.+ --++|+|++|.+-|..|..
T Consensus 438 P~d~Ve~g~iGvTN~a~r~~G-mIGVRL~dsdefGPTGE~Fe~-TNiIGrIveg~e~l~~ike 498 (512)
T COG4070 438 PADTVEAGEIGVTNQAARHMG-MIGVRLEDSDEFGPTGEKFEG-TNIIGRIVEGPERLIGIKE 498 (512)
T ss_pred chhheecccccccccchhccc-eeEEEeccccccCCCCCcccc-ceeehhhccChHHhccccc
Confidence 444444555544432110000 111222222 12333 3479999999999988876
No 37
>PF04126 Cyclophil_like: Cyclophilin-like; InterPro: IPR007256 Proteins of this family have no known function.; PDB: 2KA0_A 1ZX8_C 2NNZ_A.
Probab=84.59 E-value=12 Score=26.67 Aligned_cols=47 Identities=17% Similarity=0.232 Sum_probs=30.4
Q ss_pred CCceEEEeeecCCCCCCccEEEEcCCCC-------CCCCCccEEEEEEcCHHHHHHHHh
Q 030245 100 TGPGILSMANAGPGTNGSQFFISAGKTE-------WLDGKHVAFGQVVEGMNVVKAIEK 151 (180)
Q Consensus 100 ~~~G~vs~~~~g~~~~~sqFfI~l~~~~-------~ld~~~~vfG~Vi~G~~vl~~I~~ 151 (180)
...|-|+.-..+. .|.|-+++.| .+-....++||+.+|.+.++++..
T Consensus 60 ~~~GDi~Yw~pg~-----~l~ifyg~~p~S~~~~~~~~~~v~~lG~i~~~~~~l~~~~~ 113 (120)
T PF04126_consen 60 VEAGDIAYWPPGG-----ALAIFYGDTPISEGGEIRPASPVNVLGRIVSDLENLKEVKG 113 (120)
T ss_dssp B-TTEEEEECCCT-----EEEEESS--TT--TTSB--SSSEEEEEEEEC-GGGGGG--T
T ss_pred ccCceEEEeCCCC-----EEEEEecCcccccccccccCCcceEEEEECCCHHHHhhCCC
Confidence 4588888876544 6888887774 344568899999999999888765
No 38
>PF06138 Chordopox_E11: Chordopoxvirus E11 protein; InterPro: IPR009201 This group represents a virion core protein, vaccinia E11L type.
Probab=62.76 E-value=57 Score=23.72 Aligned_cols=52 Identities=19% Similarity=0.333 Sum_probs=37.0
Q ss_pred CCCcEEEEEEEECCEEeEEEEEEEcCCCCh---------HHHHHHHHhhcCCCCCCcCCCceeecCCEEEEeecC
Q 030245 1 MANPKVFFDMTVGGQPAGRIVMELFADVTP---------RTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPG 66 (180)
Q Consensus 1 ~~~p~v~~di~~~~t~~G~i~ieL~~~~aP---------~~~~nF~~l~~g~~~~~~~~~~~~Y~g~~f~rv~~~ 66 (180)
|.=-.+|++ |..|++.+..-.+.++ ++++.|++... +-..-+-+.|+=++++
T Consensus 1 MElvNIfLE-----sd~grvkl~~~~~~~~c~~~~~~~~~Av~~Fl~~L~---------kyI~veeStFylvvrd 61 (130)
T PF06138_consen 1 MELVNIFLE-----SDSGRVKLRYEEPDCKCARTGCEARRAVKHFLSVLK---------KYIDVEESTFYLVVRD 61 (130)
T ss_pred CcceEEEEe-----ccCceeEEEEeCCCcccccccchHHHHHHHHHHHHH---------hhEEecccEEEEEEec
Confidence 333467887 7888888877755433 36889999883 3345678899999887
No 39
>COG2164 Uncharacterized conserved protein [Function unknown]
Probab=55.37 E-value=12 Score=26.23 Aligned_cols=22 Identities=18% Similarity=0.181 Sum_probs=18.8
Q ss_pred EEEEEEEcCCCChHHHHHHHHhh
Q 030245 18 GRIVMELFADVTPRTAENFRALC 40 (180)
Q Consensus 18 G~i~ieL~~~~aP~~~~nF~~l~ 40 (180)
|.-++||+.+. |.+++.+..-.
T Consensus 13 g~c~~eL~ee~-pE~vr~i~d~l 34 (126)
T COG2164 13 GHCTGELDEEN-PESVRRIYDSL 34 (126)
T ss_pred ceEEEEccccC-hHHHHHHHHhC
Confidence 78999999998 99999877654
No 40
>PF08415 NRPS: Nonribosomal peptide synthase; InterPro: IPR013624 This domain is found in bacterial non-ribosomal peptide synthetases (NRPS). NRPS are megaenzymes organised as iterative modules, one for each amino acid to be built into the peptide product []. NRPS modules are involved in epothilone biosynthesis (EpoB), myxothiazol biosynthesis (MtaC and MtaD), and other functions []. The NRPS domain tends to be found together with the condensation domain (IPR001242 from INTERPRO) and the phosphopantetheine binding domain (IPR006163 from INTERPRO).
Probab=50.78 E-value=18 Score=22.16 Aligned_cols=28 Identities=18% Similarity=0.387 Sum_probs=22.1
Q ss_pred EcCHHHHHHHHhCCCCCCCCCCCeEEeee
Q 030245 140 VEGMNVVKAIEKMGSRSGRTKKPVVIADC 168 (180)
Q Consensus 140 i~G~~vl~~I~~~~~~~~~p~~~i~I~~c 168 (180)
.+|.+||+++++. .......-||.+++.
T Consensus 4 ~sGv~vlRel~r~-~~~~~~~~PVVFTS~ 31 (58)
T PF08415_consen 4 FSGVEVLRELARR-GGGRAAVMPVVFTSM 31 (58)
T ss_pred ccHHHHHHHHHHh-cCCCCCcCCEEEeCC
Confidence 4799999999998 555677778887763
No 41
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=43.50 E-value=15 Score=31.37 Aligned_cols=51 Identities=18% Similarity=0.227 Sum_probs=35.1
Q ss_pred CCceEEEeeecCCCCCCccEEEEcCCCCCCCCCccEEEEEEc-CHHHHHHHHh
Q 030245 100 TGPGILSMANAGPGTNGSQFFISAGKTEWLDGKHVAFGQVVE-GMNVVKAIEK 151 (180)
Q Consensus 100 ~~~G~vs~~~~g~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~-G~~vl~~I~~ 151 (180)
..+|.|.+.|..-.....|.-|++.+.|. |++.-|+|+|.+ -+.+|+-|..
T Consensus 298 r~~G~ItIdN~~ygRY~GElQI~~~dlp~-d~rvNViG~V~~~d~~LLd~I~~ 349 (357)
T PF05913_consen 298 RKRGDITIDNENYGRYKGELQIVKKDLPA-DERVNVIGRVDEEDLPLLDYIKP 349 (357)
T ss_dssp B-TTEEEEE-GGGGGGTT-EEEESS-B----TTEEEEEEE-GGGGGGGGG--T
T ss_pred ccCceEEEeCCCccccccEEEEEcccCCC-CCCeeEEEEECHHHHHHHHhcCC
Confidence 45899999998766777899999999985 888999999995 6888888764
No 42
>COG4391 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.58 E-value=19 Score=22.73 Aligned_cols=10 Identities=50% Similarity=1.049 Sum_probs=8.4
Q ss_pred CCcEEEEEEE
Q 030245 2 ANPKVFFDMT 11 (180)
Q Consensus 2 ~~p~v~~di~ 11 (180)
.+|+||+||.
T Consensus 35 ~HPrV~L~mg 44 (62)
T COG4391 35 DHPRVFLDMG 44 (62)
T ss_pred CCCEEEEEcC
Confidence 3899999993
No 43
>PHA03001 putative virion core protein; Provisional
Probab=36.35 E-value=1.7e+02 Score=21.34 Aligned_cols=52 Identities=25% Similarity=0.422 Sum_probs=36.0
Q ss_pred CCCcEEEEEEEECCEEeEEEEEEEc--CCCCh------HHHHHHHHhhcCCCCCCcCCCceeecCCEEEEeecC
Q 030245 1 MANPKVFFDMTVGGQPAGRIVMELF--ADVTP------RTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPG 66 (180)
Q Consensus 1 ~~~p~v~~di~~~~t~~G~i~ieL~--~~~aP------~~~~nF~~l~~g~~~~~~~~~~~~Y~g~~f~rv~~~ 66 (180)
|.=-.+|++ |..|++.+..- +..+| +++++|++... |-..-+.++||=++++
T Consensus 1 MElvNIfLE-----sd~grvkl~~~~~~~~~~~~~~~~ka~~~fl~~L~---------kYi~v~eStFylvvrd 60 (132)
T PHA03001 1 MELVNIFLE-----TDAGRVKLAIENPDKVCATKAEMRKAINKFLELLK---------KYIHVDKSTFYLVVKD 60 (132)
T ss_pred CcceEEEEe-----ccCCceEEEEcCCCccccccchHHHHHHHHHHHHH---------hhEEecccEEEEEEec
Confidence 334467887 77787766653 33444 47789999883 4455688899999887
No 44
>PF10276 zf-CHCC: Zinc-finger domain; InterPro: IPR019401 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a short conserved zinc-finger domain. It contains the sequence motif Cx8Hx14Cx2C. ; PDB: 2JVM_A 2JRR_A 2JZ8_A.
Probab=36.20 E-value=25 Score=20.19 Aligned_cols=11 Identities=18% Similarity=0.745 Sum_probs=8.3
Q ss_pred CCcEEEEEEEE
Q 030245 2 ANPKVFFDMTV 12 (180)
Q Consensus 2 ~~p~v~~di~~ 12 (180)
.+|+||++|.-
T Consensus 15 gHPrVyl~l~~ 25 (40)
T PF10276_consen 15 GHPRVYLNLDD 25 (40)
T ss_dssp CCCCEEEE-TT
T ss_pred CCCeEEEecCC
Confidence 58999999765
No 45
>COG0219 CspR Predicted rRNA methylase (SpoU class) [Translation, ribosomal structure and biogenesis]
Probab=35.15 E-value=48 Score=24.94 Aligned_cols=33 Identities=21% Similarity=0.467 Sum_probs=29.3
Q ss_pred EEEEEcCCCChHHHHHHHHhhcCCCCCCcCCCceeecCCEEEEeec
Q 030245 20 IVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIP 65 (180)
Q Consensus 20 i~ieL~~~~aP~~~~nF~~l~~g~~~~~~~~~~~~Y~g~~f~rv~~ 65 (180)
+.|-||.-+-|..+.|.+++|. -.|+..|.|.|
T Consensus 3 ~~IvL~~PeIP~NTGNI~R~ca-------------~tga~LhlI~P 35 (155)
T COG0219 3 LNIVLYQPEIPPNTGNIIRTCA-------------ATGAELHLIEP 35 (155)
T ss_pred cEEEEECCCCCCchhHHHHHHH-------------hcCCeEEEEcc
Confidence 6788999999999999999993 56889999987
No 46
>PF09383 NIL: NIL domain; InterPro: IPR018449 This domain is found at the C terminus of ABC transporter proteins involved in D-methionine transport as well as a number of ferredoxin-like proteins. This domain is likely to act as a substrate binding domain. The domain has been named after a conserved sequence in some members of the family. ; PDB: 2QRR_A 3CED_A 2QSW_A 3TUZ_D 3TUJ_D 3DHX_B 3TUI_H 3DHW_D.
Probab=29.14 E-value=1.5e+02 Score=18.66 Aligned_cols=27 Identities=30% Similarity=0.437 Sum_probs=18.8
Q ss_pred ECCEEeEEEEEEEcCCCChHHHHHHHHhh
Q 030245 12 VGGQPAGRIVMELFADVTPRTAENFRALC 40 (180)
Q Consensus 12 ~~~t~~G~i~ieL~~~~aP~~~~nF~~l~ 40 (180)
+.+++.|.++++|.++ +...+.+++..
T Consensus 40 i~~~~~G~l~l~l~g~--~~~~~~a~~~L 66 (76)
T PF09383_consen 40 IQGTPFGILILELPGD--DEEIEKAIAYL 66 (76)
T ss_dssp ETTEEEEEEEEEEES---HHHHHHHHHHH
T ss_pred cCCeeEEEEEEEEECC--HHHHHHHHHHH
Confidence 5788999999999876 44455555544
No 47
>COG1765 Predicted redox protein, regulator of disulfide bond formation [Posttranslational modification, protein turnover, chaperones]
Probab=23.63 E-value=1.6e+02 Score=21.35 Aligned_cols=30 Identities=17% Similarity=0.289 Sum_probs=24.7
Q ss_pred CcEEEEEEEECCEEeEEEEEEEcCCCChHHHHHHHHhh
Q 030245 3 NPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALC 40 (180)
Q Consensus 3 ~p~v~~di~~~~t~~G~i~ieL~~~~aP~~~~nF~~l~ 40 (180)
.|+.|+.+ .|.+.+.++..+...+++++++
T Consensus 83 ~~~~~~~i--------~i~~~v~gd~~~e~~~~~i~~a 112 (137)
T COG1765 83 EPRGFTEI--------NIHFVVKGDLDEEKLKRAVELA 112 (137)
T ss_pred CCceEEEE--------EEEEEEecCCCHHHHHHHHHHH
Confidence 45666654 4888889999999999999999
No 48
>PF11314 DUF3117: Protein of unknown function (DUF3117); InterPro: IPR021465 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=22.60 E-value=49 Score=19.82 Aligned_cols=26 Identities=27% Similarity=0.521 Sum_probs=17.2
Q ss_pred EEEEEEECCEEeEEEEEEEcCCCChHHH
Q 030245 6 VFFDMTVGGQPAGRIVMELFADVTPRTA 33 (180)
Q Consensus 6 v~~di~~~~t~~G~i~ieL~~~~aP~~~ 33 (180)
+.|.|-+++ -||++|||..++|-...
T Consensus 19 ivmRvPleG--GGRLVvEl~~~Ea~~L~ 44 (51)
T PF11314_consen 19 IVMRVPLEG--GGRLVVELNPDEAKELG 44 (51)
T ss_pred EEEEEecCC--CcEEEEEeCHHHHHHHH
Confidence 445554443 38999999988765433
No 49
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=22.24 E-value=2.5e+02 Score=24.28 Aligned_cols=49 Identities=16% Similarity=0.200 Sum_probs=37.5
Q ss_pred CccEEEEcC---------CCCCCCCCccEEEEEEcCHH-HHHHHHhCCCCCCCCCCCeE
Q 030245 116 GSQFFISAG---------KTEWLDGKHVAFGQVVEGMN-VVKAIEKMGSRSGRTKKPVV 164 (180)
Q Consensus 116 ~sqFfI~l~---------~~~~ld~~~~vfG~Vi~G~~-vl~~I~~~~~~~~~p~~~i~ 164 (180)
+-+||++-+ +.+|-.|.||.=|..++=+| .|++|..+|..+-....|..
T Consensus 247 ~vE~Fv~~dg~llvNEiAPRvHNSGH~T~~gc~~SQFEqHlRAv~glPLg~~~~~~p~v 305 (375)
T COG0026 247 AVEFFVTPDGELLVNEIAPRVHNSGHWTIDGCETSQFEQHLRAVLGLPLGSTTLLSPSV 305 (375)
T ss_pred EEEEEEECCCcEEEeeccCCCCCccccchhhccccHHHHHHHHHhCCCCCCccccCceE
Confidence 558888765 45788889999999999988 99999999876544444433
No 50
>PF12396 DUF3659: Protein of unknown function (DUF3659) ; InterPro: IPR022124 This domain family is found in bacteria and eukaryotes, and is approximately 70 amino acids in length.
Probab=20.27 E-value=2.4e+02 Score=17.80 Aligned_cols=43 Identities=26% Similarity=0.227 Sum_probs=26.2
Q ss_pred CCCCCccEEEEEEcCHHHHHHHHhCCCC-CCC--CCCCeEEeeeeEEe
Q 030245 128 WLDGKHVAFGQVVEGMNVVKAIEKMGSR-SGR--TKKPVVIADCGIYY 172 (180)
Q Consensus 128 ~ld~~~~vfG~Vi~G~~vl~~I~~~~~~-~~~--p~~~i~I~~cg~l~ 172 (180)
-+|..-.++|||++| -+.+|.-...+ ++. -..--.|-++..+.
T Consensus 15 V~d~~G~~vG~vveG--d~k~L~G~~vd~~G~I~d~~G~viGkae~~~ 60 (64)
T PF12396_consen 15 VVDDDGNVVGRVVEG--DPKKLVGKKVDEDGDILDKDGNVIGKAEPIE 60 (64)
T ss_pred EECCCCCEEEEEecC--CHHHhcCCcCCCCCCEECCCCCEEEEEEeCC
Confidence 345667899999999 55666655554 332 22334566666554
No 51
>PF09087 Cyc-maltodext_N: Cyclomaltodextrinase, N-terminal; InterPro: IPR015171 This domain is found at the N terminus of cyclomaltodextrinase. The domain assumes a beta-sandwich structure composed of the eight antiparallel beta-strands. A ten residue linker is also present at the C-terminal end, which connects the N-terminal domain to a distal domain in the protein. This domain participates in oligomerisation of the protein, wherein the N-terminal domain of one subunit contacts the active centre of the other subunit, and is also required for binding of cyclodextrin to substrate []. ; PDB: 3EDK_B 3EDD_A 3EDJ_B 3EDE_A 1H3G_B 3EDF_B.
Probab=20.18 E-value=1.9e+02 Score=19.59 Aligned_cols=23 Identities=9% Similarity=0.278 Sum_probs=16.6
Q ss_pred EEEEEEEECCEEeEEEEEEEcCC
Q 030245 5 KVFFDMTVGGQPAGRIVMELFAD 27 (180)
Q Consensus 5 ~v~~di~~~~t~~G~i~ieL~~~ 27 (180)
++|+++.+.+...|.+.|.+...
T Consensus 50 YLFv~L~i~~akpg~~~i~~~~~ 72 (88)
T PF09087_consen 50 YLFVYLDISDAKPGTFTINFKKG 72 (88)
T ss_dssp EEEEEEEE-T--SEEEEEEEEET
T ss_pred EEEEEEecCCCCCcEEEEEEEcC
Confidence 67888888888889999998755
Done!