Query 030246
Match_columns 180
No_of_seqs 134 out of 597
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 10:48:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030246.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030246hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3225 Mitochondrial import i 100.0 8.1E-33 1.8E-37 218.5 4.3 149 14-179 14-164 (168)
2 TIGR00980 3a0801so1tim17 mitoc 99.9 5.7E-26 1.2E-30 183.0 13.1 124 38-179 5-128 (170)
3 PTZ00236 mitochondrial import 99.9 3.9E-25 8.4E-30 177.2 12.2 129 37-179 6-134 (164)
4 PF02466 Tim17: Tim17/Tim22/Ti 99.9 2.1E-23 4.5E-28 159.1 13.8 126 41-180 1-126 (128)
5 TIGR00983 3a0801s02tim23 mitoc 99.9 4E-22 8.7E-27 157.9 11.9 115 46-174 34-148 (149)
6 KOG1652 Mitochondrial import i 99.8 2.4E-21 5.2E-26 156.2 1.1 123 38-178 5-127 (183)
7 COG5596 TIM22 Mitochondrial im 99.8 4.1E-20 9E-25 149.7 -1.0 158 11-178 11-186 (191)
8 KOG3324 Mitochondrial import i 99.5 1.7E-14 3.7E-19 118.1 7.0 117 45-175 75-192 (206)
9 COG5596 TIM22 Mitochondrial im 97.9 6.4E-07 1.4E-11 73.2 -3.1 73 103-177 79-161 (191)
10 KOG4608 Uncharacterized conser 96.9 0.00011 2.3E-09 62.6 -2.3 54 98-151 127-180 (270)
11 KOG1398 Uncharacterized conser 94.5 0.083 1.8E-06 48.2 5.8 119 19-148 224-345 (460)
12 TIGR00980 3a0801so1tim17 mitoc 94.0 0.75 1.6E-05 37.4 9.9 120 43-180 13-133 (170)
13 KOG4096 Uncharacterized conser 83.3 1 2.2E-05 31.8 2.3 68 40-122 5-72 (75)
14 PF10247 Romo1: Reactive mitoc 82.0 1.7 3.7E-05 30.2 3.0 66 41-121 2-67 (67)
15 TIGR00983 3a0801s02tim23 mitoc 71.8 24 0.00052 28.0 7.3 116 40-169 32-147 (149)
16 KOG3225 Mitochondrial import i 64.3 3.3 7.1E-05 33.6 1.0 28 45-72 40-68 (168)
17 PF10439 Bacteriocin_IIc: Bact 56.4 42 0.00092 22.6 5.3 40 130-175 23-62 (65)
18 PF04418 DUF543: Domain of unk 56.0 15 0.00032 26.0 3.0 23 42-64 25-47 (75)
19 PF12597 DUF3767: Protein of u 48.5 35 0.00076 26.0 4.3 52 125-176 33-84 (118)
20 PF05957 DUF883: Bacterial pro 47.8 50 0.0011 23.5 4.8 15 50-64 77-91 (94)
21 COG4575 ElaB Uncharacterized c 38.4 1.4E+02 0.003 22.5 6.0 27 10-36 30-56 (104)
22 PF13436 Gly-zipper_OmpA: Glyc 36.1 1.1E+02 0.0025 23.0 5.4 38 130-167 50-87 (118)
23 KOG1398 Uncharacterized conser 35.0 66 0.0014 29.8 4.5 45 103-147 79-123 (460)
24 PF05957 DUF883: Bacterial pro 32.9 1.6E+02 0.0034 20.9 5.5 12 49-60 80-91 (94)
25 PRK09824 PTS system beta-gluco 31.8 1.8E+02 0.0038 28.4 7.1 65 104-175 331-402 (627)
26 PF15110 TMEM141: TMEM141 prot 30.9 88 0.0019 23.2 3.8 48 19-69 3-50 (94)
27 COG5336 Uncharacterized protei 30.6 2.3E+02 0.005 21.7 6.1 26 43-68 45-70 (116)
28 PF05818 TraT: Enterobacterial 29.7 78 0.0017 26.8 3.8 12 136-147 90-101 (215)
29 PF02466 Tim17: Tim17/Tim22/Ti 28.4 2.4E+02 0.0052 20.7 7.3 64 104-173 60-123 (128)
30 TIGR01992 PTS-IIBC-Tre PTS sys 28.1 1.8E+02 0.0038 27.1 6.3 68 104-175 345-416 (462)
31 PTZ00478 Sec superfamily; Prov 27.8 2.2E+02 0.0049 20.4 5.4 63 6-68 7-70 (81)
32 PF13436 Gly-zipper_OmpA: Glyc 27.8 2.2E+02 0.0048 21.4 5.8 26 45-70 47-72 (118)
33 COG4803 Predicted membrane pro 26.3 82 0.0018 25.5 3.2 56 12-68 11-76 (170)
34 PRK09796 PTS system cellobiose 24.7 1.8E+02 0.0039 27.3 5.7 69 104-175 334-406 (472)
35 PRK01844 hypothetical protein; 23.7 58 0.0013 23.0 1.7 17 84-103 39-56 (72)
36 PF14689 SPOB_a: Sensor_kinase 23.3 66 0.0014 21.3 1.9 25 117-141 7-34 (62)
37 PRK00523 hypothetical protein; 21.7 1.2E+02 0.0026 21.4 3.0 17 84-103 40-57 (72)
38 KOG0682 Ammonia permease [Inor 21.5 4.7E+02 0.01 24.9 7.7 60 117-178 272-331 (500)
39 PRK09586 murP PTS system N-ace 20.9 2.1E+02 0.0047 26.8 5.4 63 105-175 342-413 (476)
40 PF09769 ApoO: Apolipoprotein 20.6 53 0.0011 25.7 1.1 15 137-151 101-115 (158)
41 PF03672 UPF0154: Uncharacteri 20.3 76 0.0016 21.8 1.7 43 52-103 5-49 (64)
No 1
>KOG3225 consensus Mitochondrial import inner membrane translocase, subunit TIM22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=8.1e-33 Score=218.53 Aligned_cols=149 Identities=20% Similarity=0.215 Sum_probs=124.9
Q ss_pred CCchhhhhHHHHHHHHHHHHHHHH-hhCCchHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCC-CCcchhhhhh
Q 030246 14 LPQKAIKDVQFKLKELENGYKSWL-AKQPLPVEAAIVTATTAINGAAIGAFLGVMTQDLTSSLPTPPPQ-SSLNPDAVAP 91 (180)
Q Consensus 14 ~~~~~~~~~q~~~~~~~~~~k~~~-~~~~~~~e~~~~tv~g~~~G~~~G~f~g~v~~~~~~~~~~~~~~-~~~~~~~~~~ 91 (180)
..++++..+.|+ |+-+.+..+++ .+++|++|+.+++|+|+.+|+++|+|++++..... .|++. .++++|+
T Consensus 14 ~~p~~~~~l~pe-~~~~~~e~r~le~~n~c~~Ka~~sgV~GfglG~~~GlFlas~d~~~~----dP~i~~~~ar~q~--- 85 (168)
T KOG3225|consen 14 NSPKQYSLLTPE-EVGDPTEMRYLEEENSCAVKAVKSGVTGFGLGGAFGLFLASLDTQPN----DPTIYRMPARKQV--- 85 (168)
T ss_pred CCCccccccCcc-ccCChHHHHHHHHhcchhHHHHHhhccccchhhhHHhhhhhcccCCC----CCchhhhhhHHHH---
Confidence 334555666666 55555555555 78899999999999999999999999999985411 11111 2345565
Q ss_pred hhhhHHhhcCchhhhhHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHhhhhhhccCCCCCchhHHHHHHHHHHHHH
Q 030246 92 FQQVQAVAGGPLVQARNFAVITGVNAGISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIF 171 (180)
Q Consensus 92 ~~~~~~~~~~~~~~~~~fa~~g~~ysg~ec~~e~~Rgk~D~~N~~~aG~~tGa~l~~~~g~~~~~~~~~a~~gg~~fa~~ 171 (180)
++ +|+.|++++++||+++|.+|+++||++|++|.|+||+|++++||+||+.++.|+| +++++.||++|++|
T Consensus 86 ~k---dMg~r~~s~~knF~~iGlvfsg~Ec~iE~~RAK~D~~NgaiaG~vtGg~l~~raG------p~a~~~G~agfa~f 156 (168)
T KOG3225|consen 86 AK---DMGQRSGSYAKNFAIIGLVFSGVECLIESFRAKSDWYNGAIAGCVTGGSLGYRAG------PKAAAIGCAGFAAF 156 (168)
T ss_pred HH---HHHhhhcchhhhhhhhhhhehhHHHHHHHHHhhhchhcceeeeeeeccchhhccc------chhhhhchhHHHHH
Confidence 44 7999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred HHhHhhhc
Q 030246 172 QGCSFKVN 179 (180)
Q Consensus 172 s~a~~~~~ 179 (180)
|++|.++-
T Consensus 157 S~~id~y~ 164 (168)
T KOG3225|consen 157 SAAIDKYM 164 (168)
T ss_pred HHHHHHhh
Confidence 99999873
No 2
>TIGR00980 3a0801so1tim17 mitochondrial import inner membrane translocase subunit tim17.
Probab=99.94 E-value=5.7e-26 Score=183.05 Aligned_cols=124 Identities=24% Similarity=0.280 Sum_probs=109.4
Q ss_pred hhCCchHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCcchhhhhhhhhhHHhhcCchhhhhHHHHHHHHHH
Q 030246 38 AKQPLPVEAAIVTATTAINGAAIGAFLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQQVQAVAGGPLVQARNFAVITGVNA 117 (180)
Q Consensus 38 ~~~~~~~e~~~~tv~g~~~G~~~G~f~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fa~~g~~ys 117 (180)
..|||+++...+++.++.+|.++|.+++++.+.... | ..++++..++ +++.+.++++++||++|++|+
T Consensus 5 ~r~pcp~r~~d~~G~af~~G~~~G~~~g~~~G~rns-----p----~g~rl~g~l~---av~~rap~~g~~Fav~g~lys 72 (170)
T TIGR00980 5 TREPCPYRILDDFGGAFAMGTIGGSIFQAFKGFRNS-----P----KGEKLVGAMR---AIKTRAPVLGGNFAVWGGLFS 72 (170)
T ss_pred ccCCCcchhHHhhhHHHHHHHHHHHHHHHHHHhhcC-----C----ccchhhHHHH---HHHhhhhhHHHHHHHHHHHHH
Confidence 378999999999999999999999999999864221 1 1346667776 578899999999999999999
Q ss_pred HHHHHHHHHhcccchhHHHHHHHHHhhhhhhccCCCCCchhHHHHHHHHHHHHHHHhHhhhc
Q 030246 118 GISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSFKVN 179 (180)
Q Consensus 118 g~ec~~e~~Rgk~D~~N~~~aG~~tGa~l~~~~g~~~~~~~~~a~~gg~~fa~~s~a~~~~~ 179 (180)
++||+++++|+|||+||+++|||+||++|++++| +++++.+|+++++|.++|+.++
T Consensus 73 ~~ec~i~~~R~KeD~~NsiiAG~~TGa~l~~r~G------~~a~~~~aa~gg~~la~ie~~g 128 (170)
T TIGR00980 73 TIDCAVVAIRKKEDPWNSIISGFLTGAALAVRGG------PRAMRGSAILGACILAVIEGVG 128 (170)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHHHHhccC------hHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999 8999999999999988888654
No 3
>PTZ00236 mitochondrial import inner membrane translocase subunit tim17; Provisional
Probab=99.93 E-value=3.9e-25 Score=177.20 Aligned_cols=129 Identities=22% Similarity=0.331 Sum_probs=104.6
Q ss_pred HhhCCchHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCcchhhhhhhhhhHHhhcCchhhhhHHHHHHHHH
Q 030246 37 LAKQPLPVEAAIVTATTAINGAAIGAFLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQQVQAVAGGPLVQARNFAVITGVN 116 (180)
Q Consensus 37 ~~~~~~~~e~~~~tv~g~~~G~~~G~f~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fa~~g~~y 116 (180)
...|||+.+...+...++.+|.+.|.++..+.+.... | ..+++...++ +++.+.++++++||++|++|
T Consensus 6 ~~r~pcp~ri~dd~G~af~~G~vgG~~~~~~~G~rns-----p----~g~rl~g~l~---~~~~rap~~g~~FAv~G~~y 73 (164)
T PTZ00236 6 LSREPCPDRIIEDMGGAFSMGCIGGFIWHFLKGMRNS-----P----KGERFSGGFY---LLRKRAPILGGNFAIWGGLF 73 (164)
T ss_pred hCcCCCchHHHHhccHHHHHHHHHHHHHHHHHHHHhC-----C----CcchHHHHHH---HHHhhhhhHHHHHHHHHHHH
Confidence 3589999999999999999988888888888864221 1 1445666666 57789999999999999999
Q ss_pred HHHHHHHHHHhcccchhHHHHHHHHHhhhhhhccCCCCCchhHHHHHHHHHHHHHHHhHhhhc
Q 030246 117 AGISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSFKVN 179 (180)
Q Consensus 117 sg~ec~~e~~Rgk~D~~N~~~aG~~tGa~l~~~~g~~~~~~~~~a~~gg~~fa~~s~a~~~~~ 179 (180)
+++||+++++|+|||+||+++|||+||++|+++.|. ++...+++.+|++++++.++-+.++
T Consensus 74 s~~ec~~~~~R~K~D~~Nsi~AG~~TGa~l~~r~G~--~~~~~~a~~Gg~~~~~ie~~~i~~~ 134 (164)
T PTZ00236 74 STFDCTLQYLRGKEDHWNAIASGFFTGGVLAIRGGW--RSAVRNAIFGGILLGIIELVSIGMN 134 (164)
T ss_pred HHHHHHHHHHHccCchHHHHHHHHHHHHHHHHhcCh--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999992 2223367777777776666655543
No 4
>PF02466 Tim17: Tim17/Tim22/Tim23/Pmp24 family; InterPro: IPR003397 The membrane-embedded multi-protein complexes of mitochondria mediate the transport of nuclear-encoded proteins across and into the outer or inner mitochondrial membranes []. The TOM (translocase of the outer mitochondrial membrane) complex consists of cytosol-exposed receptors and a pore-forming core, and mediates the transport of proteins from the cytosol across and into the outer mitochondrial membrane. A novel protein complex in the outer membrane of mitochondria, called the SAM complex (sorting and assembly machinery), is involved in the biogenesis of beta-barrel proteins of the outer membrane. Two translocases of the inner mitochondrial membrane (TIM22 and TIM23 complexes) mediate protein transport at the inner membrane. The TIM23 complex (a presequence translocase) mediates the transport of presequence-containing proteins across and into the inner membrane. Tim23 and Tim17 form part of this complex. Tim23 forms a pore in the inner membrane. The role of Tim17 is not yet fully understood. The TIM22 complex (a twin-pore carrier translocase) catalyses the insertion of multi-spanning proteins that have internal targeting signals into the inner membrane. The TIM22 complex mediates the membrane insertion of multi-spanning inner-membrane proteins that have internal targeting signals, and it uses the membrane potential as an external driving force. The Tim22 subunit of the mitochondrial import inner membrane translocase is included in this family. This family also includes Pmp24, a peroxisomal membrane protein, and NADH ubiquinone dehydrogenase 1 alpha subunit 11. Pmp24 was previously known as Pmp27 [].
Probab=99.91 E-value=2.1e-23 Score=159.07 Aligned_cols=126 Identities=28% Similarity=0.397 Sum_probs=110.7
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCcchhhhhhhhhhHHhhcCchhhhhHHHHHHHHHHHHH
Q 030246 41 PLPVEAAIVTATTAINGAAIGAFLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQQVQAVAGGPLVQARNFAVITGVNAGIS 120 (180)
Q Consensus 41 ~~~~e~~~~tv~g~~~G~~~G~f~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fa~~g~~ysg~e 120 (180)
||.-+.+.+++.+++.|.++|++.++++..... +...+.+++++..++ .++++...++.+||.++++|+++|
T Consensus 1 ~c~~~~~~~~~~g~~~G~~~G~~~~~~~~~~~~-----~~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~y~~~~ 72 (128)
T PF02466_consen 1 SCPERILDSTGKGFVAGAVFGGFIGAISAFTRP-----PRGSPLRPRLRSILN---AVGRRGPRHGARFGSFGGLYSGIE 72 (128)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-----ccCCcHhHHHHHHHH---HHhccchHHHHHHHHHHHHHHHHH
Confidence 689999999999999999999999999652111 111234667888887 577888889999999999999999
Q ss_pred HHHHHHhcccchhHHHHHHHHHhhhhhhccCCCCCchhHHHHHHHHHHHHHHHhHhhhcC
Q 030246 121 CVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSFKVNR 180 (180)
Q Consensus 121 c~~e~~Rgk~D~~N~~~aG~~tGa~l~~~~g~~~~~~~~~a~~gg~~fa~~s~a~~~~~~ 180 (180)
|.++++|+|||+||+++||++||++++.+.+ ++.++.+++++++++.++++++|
T Consensus 73 ~~l~~~R~k~D~~N~~~aG~~aGa~~~~~~g------~~~~~~~~~~~a~~~~~~~~~~~ 126 (128)
T PF02466_consen 73 CALERLRGKDDPWNSAIAGAAAGAVLGLRSG------PRGMASGAALGAAFAAAVEYYGR 126 (128)
T ss_pred HHHHHhhcccccchhHHHHHHHHHHHHhccC------hHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999998 99999999999999999999875
No 5
>TIGR00983 3a0801s02tim23 mitochondrial import inner membrane translocase subunit tim23.
Probab=99.88 E-value=4e-22 Score=157.88 Aligned_cols=115 Identities=23% Similarity=0.212 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCcchhhhhhhhhhHHhhcCchhhhhHHHHHHHHHHHHHHHHHH
Q 030246 46 AAIVTATTAINGAAIGAFLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQQVQAVAGGPLVQARNFAVITGVNAGISCVMKR 125 (180)
Q Consensus 46 ~~~~tv~g~~~G~~~G~f~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fa~~g~~ysg~ec~~e~ 125 (180)
.|..++.++++|.++|.+++.+++....+ + ..+.++++...++ +++++.++++++||+++.+|+++||.+++
T Consensus 34 ~~~~~G~ay~~G~~~Gg~~Gl~~G~~~~~----~-~~~~k~rln~~ln---~~~~~g~~~G~~~g~~g~lys~~e~~i~~ 105 (149)
T TIGR00983 34 LCFGTGTCYLTGLAIGALNGLRLGLKETQ----S-MPWTKLRLNQILN---MVTRRGPFWGNTLGILALVYNGINSIIEA 105 (149)
T ss_pred hhhhHhHHHHHHHHHHHHHHHHHHHhhCC----C-CCcHHHHHHHHHH---HHHhHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34488888888888888888888654321 1 1233678888887 58899999999999999999999999999
Q ss_pred HhcccchhHHHHHHHHHhhhhhhccCCCCCchhHHHHHHHHHHHHHHHh
Q 030246 126 LRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGC 174 (180)
Q Consensus 126 ~Rgk~D~~N~~~aG~~tGa~l~~~~g~~~~~~~~~a~~gg~~fa~~s~a 174 (180)
+|+|||+||+++||++||++|..++| +++++.+|++-+++.++
T Consensus 106 ~R~k~D~~Nsv~AGa~TGal~~~~~G------~r~~~~g~~~G~~l~~~ 148 (149)
T TIGR00983 106 TRGKHDDFNSVAAGALTGALYKSTRG------LRGMARSGALGATAAGV 148 (149)
T ss_pred HhccchhhHhHHHHHHHHHHHHhccC------hHHHHHHhHHHHHHhhc
Confidence 99999999999999999999999999 99999999888777654
No 6
>KOG1652 consensus Mitochondrial import inner membrane translocase, subunit TIM17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=2.4e-21 Score=156.16 Aligned_cols=123 Identities=19% Similarity=0.257 Sum_probs=100.8
Q ss_pred hhCCchHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCcchhhhhhhhhhHHhhcCchhhhhHHHHHHHHHH
Q 030246 38 AKQPLPVEAAIVTATTAINGAAIGAFLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQQVQAVAGGPLVQARNFAVITGVNA 117 (180)
Q Consensus 38 ~~~~~~~e~~~~tv~g~~~G~~~G~f~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fa~~g~~ys 117 (180)
..++|+.+....+...+.||.+-|..+..+..-... |. .......++ ....+.+.++++||+||++||
T Consensus 5 sr~pcp~riv~d~g~afamg~igG~~f~~ikG~~na-----p~----G~r~~gg~~---av~~~ap~~ggsFAvwgglfS 72 (183)
T KOG1652|consen 5 SREPCPIRIVDDCGGAFAMGTIGGSVFQLIKGFRNA-----PS----GARLVGGIS---AVKMRAPQSGGSFAVWGGLFS 72 (183)
T ss_pred cCCCCCceeeccccchhhhcccccceeeeeeeeecC-----Cc----ccccccchh---hhhccCcccccceeeeechhh
Confidence 468999999999999999999999888888864222 11 123333333 345677899999999999999
Q ss_pred HHHHHHHHHhcccchhHHHHHHHHHhhhhhhccCCCCCchhHHHHHHHHHHHHHHHhHhhh
Q 030246 118 GISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSFKV 178 (180)
Q Consensus 118 g~ec~~e~~Rgk~D~~N~~~aG~~tGa~l~~~~g~~~~~~~~~a~~gg~~fa~~s~a~~~~ 178 (180)
.++|++..+|+|||.||++++|++||++|+.|.| +++++.+++.|+++.+.|+=+
T Consensus 73 t~dC~Lv~~R~KeDpwNsivsGa~TGg~La~r~g------~~a~~~sa~~~g~~lamieg~ 127 (183)
T KOG1652|consen 73 TVDCALVAIRKKEDPWNSIVSGAATGGLLAARGG------PKAMLTSAITGGLLLAMIEGL 127 (183)
T ss_pred HHHHHHHHHhcccchHHHHHHHhhccceeecccc------HHHHHHHHHHHHHHHHHHHhH
Confidence 9999999999999999999999999999999999 888888888888887777644
No 7
>COG5596 TIM22 Mitochondrial import inner membrane translocase, subunit TIM22 [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=4.1e-20 Score=149.71 Aligned_cols=158 Identities=15% Similarity=0.115 Sum_probs=132.7
Q ss_pred ccCCCchhhhhHHHHHHHHHHHHHHHHhhC-----CchHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCC-------
Q 030246 11 LVQLPQKAIKDVQFKLKELENGYKSWLAKQ-----PLPVEAAIVTATTAINGAAIGAFLGVMTQDLTSSLPTP------- 78 (180)
Q Consensus 11 ~~~~~~~~~~~~q~~~~~~~~~~k~~~~~~-----~~~~e~~~~tv~g~~~G~~~G~f~g~v~~~~~~~~~~~------- 78 (180)
++++.+++.+.+++. |+-..+++...... +|+-|++++++.|+.+|...|.|.+++.......-..+
T Consensus 11 ~~~~s~~~~~~lS~~-e~d~~~~~~l~~~~~~~~~~~i~k~~~s~l~G~~~g~~~g~f~ssl~y~t~~~~~~g~nfg~vw 89 (191)
T COG5596 11 LSPPSPNAYNILSPE-ERDPCPLEKLADFMKAFSYSCIGKSALSGLKGFRLGGPSGGFSSSLAYGTGLVHLLGLNFGGVW 89 (191)
T ss_pred cCCCCCCcccccChh-hcCchhhhHHhhhccchhhcchhhhhhhcccccccccccccchhhcccccccccccCccccccc
Confidence 455567888888888 77777777766433 59999999999999999999999999986543211111
Q ss_pred ------CCCCCcchhhhhhhhhhHHhhcCchhhhhHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHhhhhhhccCC
Q 030246 79 ------PPQSSLNPDAVAPFQQVQAVAGGPLVQARNFAVITGVNAGISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGM 152 (180)
Q Consensus 79 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fa~~g~~ysg~ec~~e~~Rgk~D~~N~~~aG~~tGa~l~~~~g~ 152 (180)
....+.+++++.+++ ++..+...+++||+++|..|++.+|+++.+|+|||+.|++.+|++||+.+..+.|
T Consensus 90 Ggl~~~i~~~~~r~q~~~~~~---n~~~rg~ftG~n~GvlGl~y~~~ns~I~~~r~k~d~~~~iaaG~~TGa~~~~~~g- 165 (191)
T COG5596 90 GGLFSTIDCTPFRLQLKEQLN---NAGKRGFFTGKNLGVLGLIYAGINSIITALRAKHDIANAIAAGAFTGAALASSAG- 165 (191)
T ss_pred cceeeccccchHHHHHhhccc---cccccccccccccceeeeecccchhhhhhhhhccccchhhhhhhhhhHHHHhhcc-
Confidence 001355888888888 6889999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHHHHHHhHhhh
Q 030246 153 GGANPAVNAFTSGLLFAIFQGCSFKV 178 (180)
Q Consensus 153 ~~~~~~~~a~~gg~~fa~~s~a~~~~ 178 (180)
++++..++++|++|++.+.++
T Consensus 166 -----~qa~~~~~a~~aa~s~~~~~~ 186 (191)
T COG5596 166 -----PQAMPMGGAGFAAFSAGITLA 186 (191)
T ss_pred -----ccccccCccchhhhhhhHHhh
Confidence 999999999999999998765
No 8
>KOG3324 consensus Mitochondrial import inner membrane translocase, subunit TIM23 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.53 E-value=1.7e-14 Score=118.08 Aligned_cols=117 Identities=21% Similarity=0.165 Sum_probs=95.0
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCcchhhhhhhhhhHHhhcCchhhhhHHHHHHHHHHHHHHHH
Q 030246 45 EAAI-VTATTAINGAAIGAFLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQQVQAVAGGPLVQARNFAVITGVNAGISCVM 123 (180)
Q Consensus 45 e~~~-~tv~g~~~G~~~G~f~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fa~~g~~ysg~ec~~ 123 (180)
|.+. .+..++..|.++|.|.|.+...... +...+.++++..++. +..++....+++.++++.+|+.+|..+
T Consensus 75 E~l~f~tG~~yl~G~~iGa~~G~~~Glk~~-----e~~~~~Klr~nrILN---~~t~~G~~~gN~lG~laL~YsaiesgI 146 (206)
T KOG3324|consen 75 ENLTFGTGWAYLTGSAIGAFNGLILGLKNT-----ENGASGKLRLNRILN---SVTRRGRFWGNTLGSLALMYSAIESGI 146 (206)
T ss_pred hhhheeccchhccchhhhhHHHHHHhhhcC-----CCCCccchhHHHHhh---hccccccccccchhHHHHHHHHHHHHH
Confidence 6666 8888899999999999999874332 112344677777766 345666678999999999999999999
Q ss_pred HHHhcccchhHHHHHHHHHhhhhhhccCCCCCchhHHHHHHHHHHHHHHHhH
Q 030246 124 KRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCS 175 (180)
Q Consensus 124 e~~Rgk~D~~N~~~aG~~tGa~l~~~~g~~~~~~~~~a~~gg~~fa~~s~a~ 175 (180)
+..|+|||++|+++||.+||+++....| ++++..+++.-+...++.
T Consensus 147 ~~~R~~dd~lnsv~AGalTGalyrs~~G------lr~~av~ga~g~~aa~aw 192 (206)
T KOG3324|consen 147 EATRGKDDDLNSVAAGALTGALYRSTRG------LRAAAVAGAVGGTAAAAW 192 (206)
T ss_pred HHhhccccchhhhhhhhhhhhhhhcCCC------chHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999 888887777766665554
No 9
>COG5596 TIM22 Mitochondrial import inner membrane translocase, subunit TIM22 [Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=6.4e-07 Score=73.20 Aligned_cols=73 Identities=22% Similarity=0.305 Sum_probs=58.0
Q ss_pred hhhhhHHH-HHHHHHHHHHHHHHHHhcccchhHHHHHHHHHhhhhhhccCCCCCchhHHHHH---------HHHHHHHHH
Q 030246 103 LVQARNFA-VITGVNAGISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFT---------SGLLFAIFQ 172 (180)
Q Consensus 103 ~~~~~~fa-~~g~~ysg~ec~~e~~Rgk~D~~N~~~aG~~tGa~l~~~~g~~~~~~~~~a~~---------gg~~fa~~s 172 (180)
.-.+.||+ ++|++++.+.|..+++|.+.|.||....|+++|..++..... .+-..+.|. +.+.+++|.
T Consensus 79 ~~~g~nfg~vwGgl~~~i~~~~~r~q~~~~~~n~~~rg~ftG~n~GvlGl~--y~~~ns~I~~~r~k~d~~~~iaaG~~T 156 (191)
T COG5596 79 HLLGLNFGGVWGGLFSTIDCTPFRLQLKEQLNNAGKRGFFTGKNLGVLGLI--YAGINSIITALRAKHDIANAIAAGAFT 156 (191)
T ss_pred cccCccccccccceeeccccchHHHHHhhccccccccccccccccceeeee--cccchhhhhhhhhccccchhhhhhhhh
Confidence 45678888 899999999999999999999999999999999988877654 222444444 666677776
Q ss_pred HhHhh
Q 030246 173 GCSFK 177 (180)
Q Consensus 173 ~a~~~ 177 (180)
++.++
T Consensus 157 Ga~~~ 161 (191)
T COG5596 157 GAALA 161 (191)
T ss_pred hHHHH
Confidence 66554
No 10
>KOG4608 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.87 E-value=0.00011 Score=62.61 Aligned_cols=54 Identities=24% Similarity=0.279 Sum_probs=47.3
Q ss_pred hhcCchhhhhHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHhhhhhhccC
Q 030246 98 VAGGPLVQARNFAVITGVNAGISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSG 151 (180)
Q Consensus 98 ~~~~~~~~~~~fa~~g~~ysg~ec~~e~~Rgk~D~~N~~~aG~~tGa~l~~~~g 151 (180)
+.++.+..+=-.|++.+.|-++...+.-+|+|+|.||-+++|.+||+++.+.-|
T Consensus 127 farGgf~~G~R~alfttSff~l~t~l~vyRgk~a~~~fvaaga~tgsvF~~~~g 180 (270)
T KOG4608|consen 127 FARGGFRWGWRTALFTTSFFTLNTSLNVYRGKDALSHFVAAGAVTGSVFRINVG 180 (270)
T ss_pred HhhccccceeEEeeehhhHHHHHHHHHHHcCchhhhhhhccccceeeeEEeehh
Confidence 345666677777899999999999999999999999999999999999887766
No 11
>KOG1398 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.53 E-value=0.083 Score=48.18 Aligned_cols=119 Identities=13% Similarity=0.127 Sum_probs=68.7
Q ss_pred hhhHHHHHHHHHHHHHHHHhhCCc-hHHH-HH-HHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCcchhhhhhhhhh
Q 030246 19 IKDVQFKLKELENGYKSWLAKQPL-PVEA-AI-VTATTAINGAAIGAFLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQQV 95 (180)
Q Consensus 19 ~~~~q~~~~~~~~~~k~~~~~~~~-~~e~-~~-~tv~g~~~G~~~G~f~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (180)
+-..+.+++.+.... ..+-++| |.++ |+ .++.|+.--+..|+-....-.-..+. +.-- + ++..+..+-
T Consensus 224 f~~vr~fv~~~~~~~--~akhe~C~h~hsnCisys~~gfik~f~~g~~lq~~Lt~v~nv-r~i~-~---~pm~l~sll-- 294 (460)
T KOG1398|consen 224 FISVRNFVSDVKVEE--FAKHEPCAHIHSNCISYSANGFIKTFKKGFPLQFSLTFVPNV-RLIL-Q---KPMALTSLL-- 294 (460)
T ss_pred HHHHHHHHHHHHhhh--ccccccccCCCchHHHHHHHHhHhhcccceeeEEEEEecHHH-HHHh-c---CchhhhhHh--
Confidence 444466654444322 1245565 4556 88 67777665555555433322111100 0000 0 011111110
Q ss_pred HHhhcCchhhhhHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHhhhhhh
Q 030246 96 QAVAGGPLVQARNFAVITGVNAGISCVMKRLRGKEDLQSSVVAAFGSGAAFSL 148 (180)
Q Consensus 96 ~~~~~~~~~~~~~fa~~g~~ysg~ec~~e~~Rgk~D~~N~~~aG~~tGa~l~~ 148 (180)
.-+.....+.-.+.+-++|..+.|++.++|-+||..|+++||++++..+..
T Consensus 295 --~nrenlqlg~FlgsfvfIfkatsC~lr~v~n~dd~l~aifAgglAs~Smmf 345 (460)
T KOG1398|consen 295 --ANRENLQLGSFLGSFVFIFKATSCALRKVANKDDKLVAIFAGGLASLSMMF 345 (460)
T ss_pred --hccccchhhHHHHHHHHHHHhHHHHHHHhccCcHHHHHHHHhhhhhheeee
Confidence 123445567778899999999999999999999999999999998865443
No 12
>TIGR00980 3a0801so1tim17 mitochondrial import inner membrane translocase subunit tim17.
Probab=94.01 E-value=0.75 Score=37.42 Aligned_cols=120 Identities=13% Similarity=0.048 Sum_probs=88.5
Q ss_pred hHHHHH-HHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCcchhhhhhhhhhHHhhcCchhhhhHHHHHHHHHHHHHH
Q 030246 43 PVEAAI-VTATTAINGAAIGAFLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQQVQAVAGGPLVQARNFAVITGVNAGISC 121 (180)
Q Consensus 43 ~~e~~~-~tv~g~~~G~~~G~f~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fa~~g~~ysg~ec 121 (180)
+++++. ...+|.+.|++++++-+..+......+ +-.+..+.++.-. -..+.+.--++..++...++.
T Consensus 13 ~~d~~G~af~~G~~~G~~~g~~~G~rnsp~g~rl---------~g~l~av~~rap~---~g~~Fav~g~lys~~ec~i~~ 80 (170)
T TIGR00980 13 ILDDFGGAFAMGTIGGSIFQAFKGFRNSPKGEKL---------VGAMRAIKTRAPV---LGGNFAVWGGLFSTIDCAVVA 80 (170)
T ss_pred hHHhhhHHHHHHHHHHHHHHHHHHhhcCCccchh---------hHHHHHHHhhhhh---HHHHHHHHHHHHHHHHHHHHH
Confidence 456777 677777788888887777665454431 2233334444322 234566667888899999998
Q ss_pred HHHHHhcccchhHHHHHHHHHhhhhhhccCCCCCchhHHHHHHHHHHHHHHHhHhhhcC
Q 030246 122 VMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSFKVNR 180 (180)
Q Consensus 122 ~~e~~Rgk~D~~N~~~aG~~tGa~l~~~~g~~~~~~~~~a~~gg~~fa~~s~a~~~~~~ 180 (180)
.-++-=-.+-++-..+.|.+-++-=+.+.- +..++.+++++++|.++-+.++|
T Consensus 81 ~R~KeD~~NsiiAG~~TGa~l~~r~G~~a~------~~~aa~gg~~la~ie~~g~~~~~ 133 (170)
T TIGR00980 81 IRKKEDPWNSIISGFLTGAALAVRGGPRAM------RGSAILGACILAVIEGVGLVLTR 133 (170)
T ss_pred HhcccchHHHHHHHHHHHHHHHhccChHHH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 877766788899999999998888777776 88999999999999999888764
No 13
>KOG4096 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.31 E-value=1 Score=31.80 Aligned_cols=68 Identities=18% Similarity=0.175 Sum_probs=43.8
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCcchhhhhhhhhhHHhhcCchhhhhHHHHHHHHHHHH
Q 030246 40 QPLPVEAAIVTATTAINGAAIGAFLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQQVQAVAGGPLVQARNFAVITGVNAGI 119 (180)
Q Consensus 40 ~~~~~e~~~~tv~g~~~G~~~G~f~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fa~~g~~ysg~ 119 (180)
.||.-|.-+..++|...|.+.|.++|.+... .+.+ + -+.-++. +++-+..++..|+.+=++=+++
T Consensus 5 pSc~dKikmG~~mG~avG~a~G~lfGgf~~l-R~g~---~----g~~~vr~-------iGkt~~~SagtFG~FM~igs~I 69 (75)
T KOG4096|consen 5 PSCFDKIKMGLMMGGAVGGATGALFGGFAAL-RYGP---R----GRGLVRT-------IGKTMLQSAGTFGLFMGIGSGI 69 (75)
T ss_pred ccHHHHHHHHHHHHhhhhhhhhhhccchhhe-eecC---C----hhHHHHH-------HhHHHHhccchhhhhhhhhhhe
Confidence 4566666666777777777777777777753 2211 1 1333332 4556677888899888888888
Q ss_pred HHH
Q 030246 120 SCV 122 (180)
Q Consensus 120 ec~ 122 (180)
+|-
T Consensus 70 r~~ 72 (75)
T KOG4096|consen 70 RCG 72 (75)
T ss_pred ecC
Confidence 774
No 14
>PF10247 Romo1: Reactive mitochondrial oxygen species modulator 1; InterPro: IPR018450 The majority of endogenous reactive oxygen species (ROS) in cells are produced by the mitochondrial respiratory chain. An increase or imbalance in ROS alters the intracellular redox homeostasis, triggers DNA damage, and may contribute to cancer development and progression. This entry contains the mitochondrial protein, reactive oxygen species modulator 1 (Romo1), that is responsible for increasing the level of ROS in cells. In various cancer cell lines with elevated levels of ROS there is also an increased abundance of Romo1 []. Increased Romo1 expression can have a number of other affects including: inducing premature senescence of cultured human fibroblasts [, ] and increased resistance to 5-fluorouracil [].
Probab=82.02 E-value=1.7 Score=30.19 Aligned_cols=66 Identities=14% Similarity=0.118 Sum_probs=34.7
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCcchhhhhhhhhhHHhhcCchhhhhHHHHHHHHHHHHH
Q 030246 41 PLPVEAAIVTATTAINGAAIGAFLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQQVQAVAGGPLVQARNFAVITGVNAGIS 120 (180)
Q Consensus 41 ~~~~e~~~~tv~g~~~G~~~G~f~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fa~~g~~ysg~e 120 (180)
+|.-|.-+...+|+..|..+|.++|.++.- .+. .++ +.-++. +++-+...+..|+.+=++=+.++
T Consensus 2 sc~~kikmG~~MG~~VG~~~G~l~G~~~~~-r~g--~~~-----~~~~~~-------lg~~~l~sg~tFG~Fm~iGs~IR 66 (67)
T PF10247_consen 2 SCFDKIKMGFMMGGAVGGAFGALFGTFSAF-RYG--ARG-----RGLMRT-------LGKYMLGSGATFGFFMSIGSVIR 66 (67)
T ss_pred cHHHHHHHHHHHhhHHHhhhhhhhhhHHHh-ccC--CCC-----cchHhH-------HhHHHhcchhHHHHHHhhhcccc
Confidence 455555556666666666666666666642 221 111 223322 34444566777776655555444
Q ss_pred H
Q 030246 121 C 121 (180)
Q Consensus 121 c 121 (180)
|
T Consensus 67 c 67 (67)
T PF10247_consen 67 C 67 (67)
T ss_pred C
Confidence 3
No 15
>TIGR00983 3a0801s02tim23 mitochondrial import inner membrane translocase subunit tim23.
Probab=71.77 E-value=24 Score=27.98 Aligned_cols=116 Identities=12% Similarity=-0.054 Sum_probs=61.3
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCcchhhhhhhhhhHHhhcCchhhhhHHHHHHHHHHHH
Q 030246 40 QPLPVEAAIVTATTAINGAAIGAFLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQQVQAVAGGPLVQARNFAVITGVNAGI 119 (180)
Q Consensus 40 ~~~~~e~~~~tv~g~~~G~~~G~f~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fa~~g~~ysg~ 119 (180)
|+--.....+.++|.+.|+++|++.|..+.....+. . ..++..+..+-++.-.++......+-.|..+- +.+
T Consensus 32 e~~~~~~G~ay~~G~~~Gg~~Gl~~G~~~~~~~~~~-k----~rln~~ln~~~~~g~~~G~~~g~~g~lys~~e---~~i 103 (149)
T TIGR00983 32 EDLCFGTGTCYLTGLAIGALNGLRLGLKETQSMPWT-K----LRLNQILNMVTRRGPFWGNTLGILALVYNGIN---SII 103 (149)
T ss_pred hhhhhhHhHHHHHHHHHHHHHHHHHHHhhCCCCCcH-H----HHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHH---HHH
Confidence 444578899999999999999999999985322110 0 12244444443333233443333343343333 333
Q ss_pred HHHHHHHhcccchhHHHHHHHHHhhhhhhccCCCCCchhHHHHHHHHHHH
Q 030246 120 SCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFA 169 (180)
Q Consensus 120 ec~~e~~Rgk~D~~N~~~aG~~tGa~l~~~~g~~~~~~~~~a~~gg~~fa 169 (180)
+..-.+-=-.+-+.-..+.|.+=-+--+.+.- ...++.++++.+
T Consensus 104 ~~~R~k~D~~Nsv~AGa~TGal~~~~~G~r~~------~~g~~~G~~l~~ 147 (149)
T TIGR00983 104 EATRGKHDDFNSVAAGALTGALYKSTRGLRGM------ARSGALGATAAG 147 (149)
T ss_pred HHHhccchhhHhHHHHHHHHHHHHhccChHHH------HHHhHHHHHHhh
Confidence 33332222345555555555555555555554 444554444433
No 16
>KOG3225 consensus Mitochondrial import inner membrane translocase, subunit TIM22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.27 E-value=3.3 Score=33.56 Aligned_cols=28 Identities=14% Similarity=0.404 Sum_probs=25.0
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHhhhcccC
Q 030246 45 EAAI-VTATTAINGAAIGAFLGVMTQDLT 72 (180)
Q Consensus 45 e~~~-~tv~g~~~G~~~G~f~g~v~~~~~ 72 (180)
.+|. +++.++|+|+++|+.+|++..++.
T Consensus 40 n~c~~Ka~~sgV~GfglG~~~GlFlas~d 68 (168)
T KOG3225|consen 40 NSCAVKAVKSGVTGFGLGGAFGLFLASLD 68 (168)
T ss_pred cchhHHHHHhhccccchhhhHHhhhhhcc
Confidence 3566 999999999999999999999865
No 17
>PF10439 Bacteriocin_IIc: Bacteriocin class II with double-glycine leader peptide; InterPro: IPR019493 Bacteriocins are proteinaceous toxins produced by bacteria to inhibit the growth of similar or closely related strains. The producer bacteria are protected from the effects of their own bacteriocins by production of a specific immunity protein which is co-transcribed with the genes encoding the bacteriocins, e.g. IPR015046 from INTERPRO. The bacteriocins are structurally more specific than their immunity-protein counterparts. Typically, production of the bacteriocin gene is from within an operon carrying up to 6 genes including a typical two-component regulatory system (R and H), a small peptide pheromone (C), and a dedicated ABC transporter (A and -B) as well as an immunity protein []. The ABC transporter is thought to recognise the N termini of both the pheromone and the bacteriocins and to transport these peptides across the cytoplasmic membrane, concurrent with cleavage at the conserved double-glycine motif. Cleaved extracellular C can then bind to the sensor kinase, H, resulting in activation of R and up-regulation of the entire gene cluster via binding to consensus sequences within each promoter []. It seems likely that the whole regulon is carried on a transmissible plasmid which is passed between closely related Firmicute species since many clinical isolates from different Firmicutes can produce at least two bacteriocins, and the same bacteriocins can be produced by different species. The proteins in this entry include amylovorin-L, lactacin-F and salivaricin CRL 1328, all of them class IIb two-peptide bacteriocins.
Probab=56.37 E-value=42 Score=22.61 Aligned_cols=40 Identities=18% Similarity=0.164 Sum_probs=25.4
Q ss_pred cchhHHHHHHHHHhhhhhhccCCCCCchhHHHHHHHHHHHHHHHhH
Q 030246 130 EDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCS 175 (180)
Q Consensus 130 ~D~~N~~~aG~~tGa~l~~~~g~~~~~~~~~a~~gg~~fa~~s~a~ 175 (180)
.|.+..+.+++++|++.+...+ .+.....|+..+...+++
T Consensus 23 ~~~~~~~~~~~~~G~~~G~~~g------~~~g~~~Ga~~G~~~G~i 62 (65)
T PF10439_consen 23 GNCVGGVGGGAAGGAAAGAAGG------PPVGAVAGAIVGAAVGAI 62 (65)
T ss_pred HHHHHHHHHHHHHHHHHhhhcc------chhHHHHHHHHHHHHHhh
Confidence 4566677888888888888888 333344444555554443
No 18
>PF04418 DUF543: Domain of unknown function (DUF543); InterPro: IPR007512 This family of short eukaryotic proteins has no known function. Most of the members of this family are only 80 amino acid residues long. However the Arabidopsis homologue is over 300 residues long. These proteins contain a conserved N-terminal cysteine and a conserved motif GXGXGXG in the carboxy terminal half that may be functionally important.
Probab=55.96 E-value=15 Score=26.04 Aligned_cols=23 Identities=9% Similarity=0.013 Sum_probs=16.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHH
Q 030246 42 LPVEAAIVTATTAINGAAIGAFL 64 (180)
Q Consensus 42 ~~~e~~~~tv~g~~~G~~~G~f~ 64 (180)
|.-..+++++.|++.|.++++++
T Consensus 25 cl~~~l~k~~~G~~~G~~~s~l~ 47 (75)
T PF04418_consen 25 CLSDTLVKTGLGFGIGVVFSLLF 47 (75)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHH
Confidence 55566668888888777777765
No 19
>PF12597 DUF3767: Protein of unknown function (DUF3767); InterPro: IPR022533 This group of proteins includes mitochodrial cytochrome c oxidase proteins [], and some transmembrane domain-containing proteins of unknown function known as FAM36A. Proteins in this family are typically between 112 and 199 amino acids in length.
Probab=48.50 E-value=35 Score=26.00 Aligned_cols=52 Identities=13% Similarity=-0.007 Sum_probs=30.3
Q ss_pred HHhcccchhHHHHHHHHHhhhhhhccCCCCCchhHHHHHHHHHHHHHHHhHh
Q 030246 125 RLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSF 176 (180)
Q Consensus 125 ~~Rgk~D~~N~~~aG~~tGa~l~~~~g~~~~~~~~~a~~gg~~fa~~s~a~~ 176 (180)
++..---.-|+++-|+.+|.++|.-.-..+.++.+++=.+-..|.+.+.+..
T Consensus 33 ~~~~iPCfR~slL~Gi~~G~~vG~~~fl~~~~~~~A~nwavgsF~l~s~~~w 84 (118)
T PF12597_consen 33 NVHKIPCFRDSLLYGIAGGFGVGGLRFLFTSNPRKAANWAVGSFFLGSLGSW 84 (118)
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHhhhhcccCCCccchhhhhHHHHHHHHHHH
Confidence 3444444556677777777666655444344555555566666766666554
No 20
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=47.75 E-value=50 Score=23.51 Aligned_cols=15 Identities=27% Similarity=0.301 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHH
Q 030246 50 TATTAINGAAIGAFL 64 (180)
Q Consensus 50 tv~g~~~G~~~G~f~ 64 (180)
.+.++..|+++|+++
T Consensus 77 vgiAagvG~llG~Ll 91 (94)
T PF05957_consen 77 VGIAAGVGFLLGLLL 91 (94)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444555555554
No 21
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=38.41 E-value=1.4e+02 Score=22.53 Aligned_cols=27 Identities=11% Similarity=0.042 Sum_probs=16.2
Q ss_pred cccCCCchhhhhHHHHHHHHHHHHHHH
Q 030246 10 SLVQLPQKAIKDVQFKLKELENGYKSW 36 (180)
Q Consensus 10 ~~~~~~~~~~~~~q~~~~~~~~~~k~~ 36 (180)
|...+.....++++.+.+...++.+.-
T Consensus 30 ssg~~a~~e~~~lR~r~~~~Lk~~r~r 56 (104)
T COG4575 30 SSGSLAGDEAEELRSKAESALKEARDR 56 (104)
T ss_pred hcccchhhHHHHHHHHHHHHHHHHHHH
Confidence 555555666677777766655555443
No 22
>PF13436 Gly-zipper_OmpA: Glycine-zipper containing OmpA-like membrane domain
Probab=36.12 E-value=1.1e+02 Score=22.99 Aligned_cols=38 Identities=21% Similarity=0.313 Sum_probs=22.8
Q ss_pred cchhHHHHHHHHHhhhhhhccCCCCCchhHHHHHHHHH
Q 030246 130 EDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLL 167 (180)
Q Consensus 130 ~D~~N~~~aG~~tGa~l~~~~g~~~~~~~~~a~~gg~~ 167 (180)
++.....+.|.+.|++++.-.|..+++....+..|+++
T Consensus 50 ~~~~~ga~~GA~~GA~~Ga~~G~~~~ga~~GAa~Ga~~ 87 (118)
T PF13436_consen 50 ENTAGGAAIGAAAGAAIGAIIGGNGRGAAIGAAAGAAV 87 (118)
T ss_pred hhHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHHH
Confidence 44555566677778888877774445555555444443
No 23
>KOG1398 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.97 E-value=66 Score=29.85 Aligned_cols=45 Identities=13% Similarity=0.130 Sum_probs=36.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHhhhhh
Q 030246 103 LVQARNFAVITGVNAGISCVMKRLRGKEDLQSSVVAAFGSGAAFS 147 (180)
Q Consensus 103 ~~~~~~fa~~g~~ysg~ec~~e~~Rgk~D~~N~~~aG~~tGa~l~ 147 (180)
..++.-+..-.+.|-...|.+.+++||...||+..++++.+.-++
T Consensus 79 cqs~lflvtn~~~f~al~C~lRkwlgkftp~t~glv~s~las~ia 123 (460)
T KOG1398|consen 79 CQSGLFLVTNTGSFHALRCCLRKWLGKFTPLTSGLVGSVLASSIA 123 (460)
T ss_pred HhhceeeeechHHHHHHHHHHHHHhcccCcccHHHHHHHHhhhhh
Confidence 445555666677888999999999999999999999998875444
No 24
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=32.88 E-value=1.6e+02 Score=20.86 Aligned_cols=12 Identities=8% Similarity=0.130 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHH
Q 030246 49 VTATTAINGAAI 60 (180)
Q Consensus 49 ~tv~g~~~G~~~ 60 (180)
..+.|+++|.++
T Consensus 80 AagvG~llG~Ll 91 (94)
T PF05957_consen 80 AAGVGFLLGLLL 91 (94)
T ss_pred HHHHHHHHHHHH
Confidence 555566665554
No 25
>PRK09824 PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Probab=31.80 E-value=1.8e+02 Score=28.40 Aligned_cols=65 Identities=17% Similarity=0.134 Sum_probs=34.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhcccc-hhHHHHHHHHHhhhhhhccCC------CCCchhHHHHHHHHHHHHHHHhH
Q 030246 104 VQARNFAVITGVNAGISCVMKRLRGKED-LQSSVVAAFGSGAAFSLVSGM------GGANPAVNAFTSGLLFAIFQGCS 175 (180)
Q Consensus 104 ~~~~~fa~~g~~ysg~ec~~e~~Rgk~D-~~N~~~aG~~tGa~l~~~~g~------~~~~~~~~a~~gg~~fa~~s~a~ 175 (180)
....++|-.|+.++.. +|-||. ..+-.++..++ +++|..--- +-+.|.-+++.||+.-+++.+.+
T Consensus 331 ~~~a~~aq~Ga~lav~------lktKnk~~K~~a~sa~is-allGITEPaiYGV~L~~kkpfi~~~iggaiGG~~~g~~ 402 (627)
T PRK09824 331 LMPAVMAQVGAALGVF------LCTRDAQKKVVAGSAFLA-GLFGITEPAVYGVNLPLKRPFIFGCISGALGAAIIGYA 402 (627)
T ss_pred HHHHHHHHHHHHHHHH------HHHhCHHHHHHHHHHHHH-HhcCCCcceeeeeecchhHHHHHHHHHHHHHHHHHHHh
Confidence 4566777777777753 232222 33333333333 333433211 23566777777777777776654
No 26
>PF15110 TMEM141: TMEM141 protein family; PDB: 2LOR_A.
Probab=30.91 E-value=88 Score=23.17 Aligned_cols=48 Identities=21% Similarity=0.182 Sum_probs=33.1
Q ss_pred hhhHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 030246 19 IKDVQFKLKELENGYKSWLAKQPLPVEAAIVTATTAINGAAIGAFLGVMTQ 69 (180)
Q Consensus 19 ~~~~q~~~~~~~~~~k~~~~~~~~~~e~~~~tv~g~~~G~~~G~f~g~v~~ 69 (180)
+..+.+...+.-+++..+.. |.-++-++++.++++|++..++..-+-.
T Consensus 3 i~rv~d~~~~khPG~~~Ya~---CqS~Af~kG~~tFv~G~~~~f~~Q~~iq 50 (94)
T PF15110_consen 3 ISRVDDAVADKHPGLQEYAA---CQSRAFMKGLFTFVLGTGATFFLQKAIQ 50 (94)
T ss_dssp HHHHHHHHHHHS-SHHHHHH---HHHHHHHHHHHHHHGGGGHHHHHHHHHH
T ss_pred hhHHHHHHHhhCCChHHHHH---HHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 44555555555556666654 8888888999999999888777766553
No 27
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.64 E-value=2.3e+02 Score=21.71 Aligned_cols=26 Identities=19% Similarity=0.234 Sum_probs=14.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhh
Q 030246 43 PVEAAIVTATTAINGAAIGAFLGVMT 68 (180)
Q Consensus 43 ~~e~~~~tv~g~~~G~~~G~f~g~v~ 68 (180)
+++.....+.|.+.|.++|.|.==+.
T Consensus 45 a~klssefIsGilVGa~iG~llD~~a 70 (116)
T COG5336 45 AFKLSSEFISGILVGAGIGWLLDKFA 70 (116)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444456666666666666654443
No 28
>PF05818 TraT: Enterobacterial TraT complement resistance protein; InterPro: IPR008874 The traT gene is one of the F factor transfer genes and encodes an outer membrane protein which is involved in interactions between Escherichia coli and its surroundings []. The protein plays a role in preventing unproductive conjugation between bacteria carrying like plasmids.; GO: 0046999 regulation of conjugation, 0019867 outer membrane
Probab=29.67 E-value=78 Score=26.77 Aligned_cols=12 Identities=33% Similarity=0.482 Sum_probs=5.5
Q ss_pred HHHHHHHhhhhh
Q 030246 136 VVAAFGSGAAFS 147 (180)
Q Consensus 136 ~~aG~~tGa~l~ 147 (180)
.++|.++|+.++
T Consensus 90 a~~Ga~~G~~~g 101 (215)
T PF05818_consen 90 ALAGAATGAAIG 101 (215)
T ss_pred HHHHhHHhhhhc
Confidence 344444444444
No 29
>PF02466 Tim17: Tim17/Tim22/Tim23/Pmp24 family; InterPro: IPR003397 The membrane-embedded multi-protein complexes of mitochondria mediate the transport of nuclear-encoded proteins across and into the outer or inner mitochondrial membranes []. The TOM (translocase of the outer mitochondrial membrane) complex consists of cytosol-exposed receptors and a pore-forming core, and mediates the transport of proteins from the cytosol across and into the outer mitochondrial membrane. A novel protein complex in the outer membrane of mitochondria, called the SAM complex (sorting and assembly machinery), is involved in the biogenesis of beta-barrel proteins of the outer membrane. Two translocases of the inner mitochondrial membrane (TIM22 and TIM23 complexes) mediate protein transport at the inner membrane. The TIM23 complex (a presequence translocase) mediates the transport of presequence-containing proteins across and into the inner membrane. Tim23 and Tim17 form part of this complex. Tim23 forms a pore in the inner membrane. The role of Tim17 is not yet fully understood. The TIM22 complex (a twin-pore carrier translocase) catalyses the insertion of multi-spanning proteins that have internal targeting signals into the inner membrane. The TIM22 complex mediates the membrane insertion of multi-spanning inner-membrane proteins that have internal targeting signals, and it uses the membrane potential as an external driving force. The Tim22 subunit of the mitochondrial import inner membrane translocase is included in this family. This family also includes Pmp24, a peroxisomal membrane protein, and NADH ubiquinone dehydrogenase 1 alpha subunit 11. Pmp24 was previously known as Pmp27 [].
Probab=28.45 E-value=2.4e+02 Score=20.66 Aligned_cols=64 Identities=9% Similarity=-0.076 Sum_probs=34.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHhhhhhhccCCCCCchhHHHHHHHHHHHHHHH
Q 030246 104 VQARNFAVITGVNAGISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQG 173 (180)
Q Consensus 104 ~~~~~fa~~g~~ysg~ec~~e~~Rgk~D~~N~~~aG~~tGa~l~~~~g~~~~~~~~~a~~gg~~fa~~s~ 173 (180)
..+.--++..++-..++..-++--..|-..-..++|.+-+.--+.+.- +..++.+++..+++..
T Consensus 60 ~~g~~~~~y~~~~~~l~~~R~k~D~~N~~~aG~~aGa~~~~~~g~~~~------~~~~~~~a~~~~~~~~ 123 (128)
T PF02466_consen 60 RFGSFGGLYSGIECALERLRGKDDPWNSAIAGAAAGAVLGLRSGPRGM------ASGAALGAAFAAAVEY 123 (128)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhccChHHH------HHHHHHHHHHHHHHHH
Confidence 344444555555555555544444456666666666666655555554 5555555555555544
No 30
>TIGR01992 PTS-IIBC-Tre PTS system, trehalose-specific IIBC component. Trehalose may also be transported (in Salmonella) via the mannose PTS or galactose permease systems, or (in Sinorhizobium, Thermococcus and Sulfolobus, for instance) by ABC transporters.
Probab=28.15 E-value=1.8e+02 Score=27.07 Aligned_cols=68 Identities=19% Similarity=0.171 Sum_probs=36.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHh----hhhhhccCCCCCchhHHHHHHHHHHHHHHHhH
Q 030246 104 VQARNFAVITGVNAGISCVMKRLRGKEDLQSSVVAAFGSG----AAFSLVSGMGGANPAVNAFTSGLLFAIFQGCS 175 (180)
Q Consensus 104 ~~~~~fa~~g~~ysg~ec~~e~~Rgk~D~~N~~~aG~~tG----a~l~~~~g~~~~~~~~~a~~gg~~fa~~s~a~ 175 (180)
....|+|..|+.++..=.. ++-+.|+-.+.+.++|++ | ++++..-.. +.|..+++.||+.-+++.+.+
T Consensus 345 ~~~~~~aq~ga~lav~lk~-k~~~~k~~a~sa~is~~~-GITEPaiyGv~l~~--kkp~i~~~ig~~igG~~~g~~ 416 (462)
T TIGR01992 345 IALSNIAQGSAALGIIFMS-RNEKEKGLSLTSAISAYL-GVTEPAMFGVNLKY--KFPFIAAMIGSGLAGLLSGLN 416 (462)
T ss_pred HHHHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHh-ccchHhHHHhccch--hhHHHHHHHHHHHHHHHHHHh
Confidence 4456777777777763211 111233334444444444 3 445544442 556677777777767666544
No 31
>PTZ00478 Sec superfamily; Provisional
Probab=27.81 E-value=2.2e+02 Score=20.44 Aligned_cols=63 Identities=10% Similarity=-0.069 Sum_probs=34.2
Q ss_pred cccccccCCCchhhhhHHHHHHHHHHHHHHHHhhCCc-hHHHHHHHHHHHHHHHHHHHHHHhhh
Q 030246 6 EKVMSLVQLPQKAIKDVQFKLKELENGYKSWLAKQPL-PVEAAIVTATTAINGAAIGAFLGVMT 68 (180)
Q Consensus 6 ~~~~~~~~~~~~~~~~~q~~~~~~~~~~k~~~~~~~~-~~e~~~~tv~g~~~G~~~G~f~g~v~ 68 (180)
|.+..++.+-+.-.+.+++.+++-..=++++.+.+.- -.+++..|+.|+++=|.+|++.=++.
T Consensus 7 ~~~~~~m~~~~~v~~~~~eF~kds~r~vkrctKPdrkEf~kiakat~iGf~imG~IGy~IKLIh 70 (81)
T PTZ00478 7 EFLTDKSNPVGYVVSGVQEFANDSRRLIRKCTKPDAKEYTNIAYACSVGFFIMGFIGYSIKLVF 70 (81)
T ss_pred hHhhcccchhHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHhhheeE
Confidence 3333333334444445555554444444444422211 12566688888888888888876665
No 32
>PF13436 Gly-zipper_OmpA: Glycine-zipper containing OmpA-like membrane domain
Probab=27.79 E-value=2.2e+02 Score=21.36 Aligned_cols=26 Identities=46% Similarity=0.422 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcc
Q 030246 45 EAAIVTATTAINGAAIGAFLGVMTQD 70 (180)
Q Consensus 45 e~~~~tv~g~~~G~~~G~f~g~v~~~ 70 (180)
+..-.++.|.+.|.++|...|.+...
T Consensus 47 ~~~~~~~~ga~~GA~~GA~~Ga~~G~ 72 (118)
T PF13436_consen 47 EAAENTAGGAAIGAAAGAAIGAIIGG 72 (118)
T ss_pred hhhhhHHHHHHHHHHHHHHHHhhcCC
Confidence 44446777777777777777777654
No 33
>COG4803 Predicted membrane protein [Function unknown]
Probab=26.28 E-value=82 Score=25.53 Aligned_cols=56 Identities=23% Similarity=0.362 Sum_probs=31.3
Q ss_pred cCCCchhhhhHHHHHHHHHHHHHH---------HHhhCCchHHHHH-HHHHHHHHHHHHHHHHHhhh
Q 030246 12 VQLPQKAIKDVQFKLKELENGYKS---------WLAKQPLPVEAAI-VTATTAINGAAIGAFLGVMT 68 (180)
Q Consensus 12 ~~~~~~~~~~~q~~~~~~~~~~k~---------~~~~~~~~~e~~~-~tv~g~~~G~~~G~f~g~v~ 68 (180)
++++... ++.++.++++.+++.- |...-....+-.+ .|..|++.|..-|+++|.+.
T Consensus 11 f~~e~~A-eev~~~l~~LqkE~LI~L~DAvvvvk~~~gkvklkQ~~Nlt~aGa~sGafWG~LiGllF 76 (170)
T COG4803 11 FDDEDKA-EEVRERLNELQKEYLITLEDAVVVVKDEDGKVKLKQLMNLTGAGAVSGAFWGMLIGLLF 76 (170)
T ss_pred cCCcchH-HHHHHHHHHhhHHHheeccceEEEEeCCCCCeeHHHHhhhhhhccccccHHHHHHHHHH
Confidence 3444444 7777777888777633 1112224445555 56666666666666655554
No 34
>PRK09796 PTS system cellobiose/arbutin/salicin-specific transporter subunits IIBC; Provisional
Probab=24.65 E-value=1.8e+02 Score=27.25 Aligned_cols=69 Identities=14% Similarity=0.144 Sum_probs=34.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHh----hhhhhccCCCCCchhHHHHHHHHHHHHHHHhH
Q 030246 104 VQARNFAVITGVNAGISCVMKRLRGKEDLQSSVVAAFGSG----AAFSLVSGMGGANPAVNAFTSGLLFAIFQGCS 175 (180)
Q Consensus 104 ~~~~~fa~~g~~ysg~ec~~e~~Rgk~D~~N~~~aG~~tG----a~l~~~~g~~~~~~~~~a~~gg~~fa~~s~a~ 175 (180)
....|+|..|+.++..=. .++-+-|+-.+.+.+++++.| +++|..-. -+.|.-+++.||+.-+++.+.+
T Consensus 334 ~~~a~~aq~ga~lav~lk-~Kn~~~k~~a~sa~isa~~~GITEPaiYGv~L~--~kkpfi~~~igg~vGG~~~g~~ 406 (472)
T PRK09796 334 EIGANLSLGGSSLAVAWK-TKNPELRQTALAAAASAIMAGISEPALYGVAIR--LKRPLIASLISGFICGAVAGMA 406 (472)
T ss_pred HHHHHHHHHHHHHHHHHH-HcCHHHHHHHHHHHHHHHHcCCCchhheeeecc--hhhHHHHHHHHHHHHHHHHHHH
Confidence 456677777777766432 112222333333333333322 23333333 3567777777777777776543
No 35
>PRK01844 hypothetical protein; Provisional
Probab=23.71 E-value=58 Score=22.97 Aligned_cols=17 Identities=12% Similarity=0.215 Sum_probs=9.1
Q ss_pred cchhhh-hhhhhhHHhhcCch
Q 030246 84 LNPDAV-APFQQVQAVAGGPL 103 (180)
Q Consensus 84 ~~~~~~-~~~~~~~~~~~~~~ 103 (180)
.++++. ..+. .|++++-
T Consensus 39 ine~mir~Mm~---QMGqkPS 56 (72)
T PRK01844 39 INEQMLKMMMM---QMGQKPS 56 (72)
T ss_pred CCHHHHHHHHH---HhCCCcc
Confidence 355544 4443 5777664
No 36
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=23.32 E-value=66 Score=21.35 Aligned_cols=25 Identities=12% Similarity=0.284 Sum_probs=18.1
Q ss_pred HHHHHHHHHHh-cccchhHHH--HHHHH
Q 030246 117 AGISCVMKRLR-GKEDLQSSV--VAAFG 141 (180)
Q Consensus 117 sg~ec~~e~~R-gk~D~~N~~--~aG~~ 141 (180)
.-++..++.+| .+||+.|.+ +.|.+
T Consensus 7 ~~~~~~~~~lR~~RHD~~NhLqvI~gll 34 (62)
T PF14689_consen 7 EELEELIDSLRAQRHDFLNHLQVIYGLL 34 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 34567788888 599999976 45554
No 37
>PRK00523 hypothetical protein; Provisional
Probab=21.75 E-value=1.2e+02 Score=21.42 Aligned_cols=17 Identities=12% Similarity=0.331 Sum_probs=9.2
Q ss_pred cchhhh-hhhhhhHHhhcCch
Q 030246 84 LNPDAV-APFQQVQAVAGGPL 103 (180)
Q Consensus 84 ~~~~~~-~~~~~~~~~~~~~~ 103 (180)
.++++. ..+. .|++++-
T Consensus 40 ine~mir~M~~---QMGqKPS 57 (72)
T PRK00523 40 ITENMIRAMYM---QMGRKPS 57 (72)
T ss_pred CCHHHHHHHHH---HhCCCcc
Confidence 355544 4444 5777664
No 38
>KOG0682 consensus Ammonia permease [Inorganic ion transport and metabolism]
Probab=21.52 E-value=4.7e+02 Score=24.94 Aligned_cols=60 Identities=13% Similarity=0.108 Sum_probs=39.0
Q ss_pred HHHHHHHHHHhcccchhHHHHHHHHHhhhhhhccCCCCCchhHHHHHHHHHHHHHHHhHhhh
Q 030246 117 AGISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSFKV 178 (180)
Q Consensus 117 sg~ec~~e~~Rgk~D~~N~~~aG~~tGa~l~~~~g~~~~~~~~~a~~gg~~fa~~s~a~~~~ 178 (180)
+.+-|.+.++|.++=-.+-++-|+++|. .+.+.| -+.-.+++++..|++-+++.-+..||
T Consensus 272 glt~~~~d~~~~~kwsv~~~cnG~laGl-VaiT~g-c~~v~pWaAiviG~va~~~~~~~~kL 331 (500)
T KOG0682|consen 272 GLTWLIIDYLRHGKWSVIGLCNGILAGL-VAITPG-CGVVEPWAAIVIGAVAGLVCNAANKL 331 (500)
T ss_pred hhhhhhhhhhhcCCcchhhhHHHHHHHH-HhhcCC-CcccCcHHHHHHhHHHHHHHHHHHHH
Confidence 4566777888865533344445555332 256666 24556999999999988887776665
No 39
>PRK09586 murP PTS system N-acetylmuramic acid transporter subunits EIIBC; Reviewed
Probab=20.92 E-value=2.1e+02 Score=26.78 Aligned_cols=63 Identities=19% Similarity=0.181 Sum_probs=32.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhcccc--hhHHHHHHHHHh-------hhhhhccCCCCCchhHHHHHHHHHHHHHHHhH
Q 030246 105 QARNFAVITGVNAGISCVMKRLRGKED--LQSSVVAAFGSG-------AAFSLVSGMGGANPAVNAFTSGLLFAIFQGCS 175 (180)
Q Consensus 105 ~~~~fa~~g~~ysg~ec~~e~~Rgk~D--~~N~~~aG~~tG-------a~l~~~~g~~~~~~~~~a~~gg~~fa~~s~a~ 175 (180)
...|+|..|+.++. -+|.|+| ..+-.+++++++ +++|..-. -+.|.-+++.||+.-+++.+.+
T Consensus 342 ~~~~~aq~Ga~lav------~lk~K~~~~~K~~a~sa~isa~lGITEPaiYGV~L~--~kkpfi~a~iGg~iGG~~~g~~ 413 (476)
T PRK09586 342 AMAGAGQVGAALAL------YWRAQKHSALRTQVKGAIIPGLLGVGEPLIYGVTLP--RMKPFVTACLGGAAGGFFIGLI 413 (476)
T ss_pred HHHHHHHHHHHHHH------HHHHcccHHHHHHHHHHHHHHHhcCCccchheeehh--hhHHHHHHHHHHHHHHHHHHHc
Confidence 45566666666554 3444321 333333444433 23333323 2556777777777777776654
No 40
>PF09769 ApoO: Apolipoprotein O; InterPro: IPR019166 Apolipoproteins are proteins that binds to lipids. Members of this family promote cholesterol efflux from macrophage cells. They are present in various lipoprotein complexes, including HDL, LDL and VLDL. Apolipoprotein O is a 198 amino acids protein that contains a 23 amino acids long signal peptide. The apoprotein is secreted by a microsomal triglyceride transfer protein (MTTP)-dependent mechanism, probably as a VLDL-associated protein that is subsequently transferred to HDL. Apolipoprotein O is the first chondroitine sulphate chain containing apolipoprotein [].
Probab=20.60 E-value=53 Score=25.71 Aligned_cols=15 Identities=20% Similarity=0.067 Sum_probs=11.6
Q ss_pred HHHHHHhhhhhhccC
Q 030246 137 VAAFGSGAAFSLVSG 151 (180)
Q Consensus 137 ~aG~~tGa~l~~~~g 151 (180)
.-|.+||.||+.+.+
T Consensus 101 ~vaglaGsIlar~r~ 115 (158)
T PF09769_consen 101 GVAGLAGSILARRRG 115 (158)
T ss_pred ehhhhheeeeeccCc
Confidence 356678999998776
No 41
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=20.32 E-value=76 Score=21.84 Aligned_cols=43 Identities=28% Similarity=0.391 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHhhhcccCCCCC-CCCCCCCcchh-hhhhhhhhHHhhcCch
Q 030246 52 TTAINGAAIGAFLGVMTQDLTSSLP-TPPPQSSLNPD-AVAPFQQVQAVAGGPL 103 (180)
Q Consensus 52 ~g~~~G~~~G~f~g~v~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 103 (180)
.+.+.|.++|+|++ ...- .+.+. +|| .+++ ++..+. .||+++.
T Consensus 5 lali~G~~~Gff~a-r~~~-~k~l~~NPp----ine~mir~M~~---QMG~kpS 49 (64)
T PF03672_consen 5 LALIVGAVIGFFIA-RKYM-EKQLKENPP----INEKMIRAMMM---QMGRKPS 49 (64)
T ss_pred HHHHHHHHHHHHHH-HHHH-HHHHHHCCC----CCHHHHHHHHH---HhCCCcc
Confidence 34455555555554 3321 11122 333 3444 444444 5777664
Done!