Query 030246
Match_columns 180
No_of_seqs 134 out of 597
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 17:26:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030246.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030246hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lbg_A Major prion protein; co 31.6 54 0.0018 18.0 3.0 19 49-67 6-24 (27)
2 2ww9_B Protein transport prote 24.8 88 0.003 21.4 3.9 24 45-68 49-72 (80)
3 3twe_A Alpha4H; unknown functi 23.9 74 0.0025 17.1 2.6 16 19-34 10-25 (27)
4 3bo0_B Preprotein translocase 20.6 1.7E+02 0.0057 18.4 5.7 50 20-69 4-58 (65)
5 2elu_A Zinc finger protein 406 20.4 31 0.0011 20.0 0.7 18 116-133 19-36 (37)
6 2imj_A Hypothetical protein DU 19.1 32 0.0011 26.7 0.7 17 120-136 17-33 (166)
7 1ixm_A SPO0B, protein (sporula 12.3 92 0.0031 24.1 1.8 25 117-141 16-43 (192)
8 3h8m_A Ephrin type-A receptor 12.0 1.2E+02 0.0041 20.7 2.1 41 3-43 9-50 (90)
9 2o35_A Hypothetical protein DU 11.0 1.1E+02 0.0039 21.9 1.7 25 117-141 17-44 (105)
10 3fyb_A Protein of unknown func 10.7 1.2E+02 0.0042 21.7 1.9 25 117-141 16-43 (104)
No 1
>2lbg_A Major prion protein; conserved hydrophobic region, membrane protei; NMR {Homo sapiens}
Probab=31.58 E-value=54 Score=18.00 Aligned_cols=19 Identities=32% Similarity=0.391 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 030246 49 VTATTAINGAAIGAFLGVM 67 (180)
Q Consensus 49 ~tv~g~~~G~~~G~f~g~v 67 (180)
+...|.+.|+.-|+++++.
T Consensus 6 a~AAGaVvGglGgy~lg~~ 24 (27)
T 2lbg_A 6 AAAAGAVVGGLGGYMLGSA 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhHHHHHHHH
Confidence 5566777777777777764
No 2
>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B
Probab=24.83 E-value=88 Score=21.42 Aligned_cols=24 Identities=13% Similarity=0.098 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 030246 45 EAAIVTATTAINGAAIGAFLGVMT 68 (180)
Q Consensus 45 e~~~~tv~g~~~G~~~G~f~g~v~ 68 (180)
+.+..++.|++.=|++|++.-++.
T Consensus 49 ~iak~t~iG~~imG~IGfiIkLI~ 72 (80)
T 2ww9_B 49 KIVKAVGIGFIAVGIIGYAIKLIH 72 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455578888887778888876654
No 3
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=23.88 E-value=74 Score=17.06 Aligned_cols=16 Identities=25% Similarity=0.557 Sum_probs=10.1
Q ss_pred hhhHHHHHHHHHHHHH
Q 030246 19 IKDVQFKLKELENGYK 34 (180)
Q Consensus 19 ~~~~q~~~~~~~~~~k 34 (180)
.+++|++++++.++++
T Consensus 10 ledlqerlrklrkklr 25 (27)
T 3twe_A 10 LEDLQERLRKLRKKLR 25 (27)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc
Confidence 4677777766666543
No 4
>3bo0_B Preprotein translocase SECE subunit; ribosome-SECY complex, protein translocation; 9.60A {Escherichia coli} PDB: 3bo1_B 3kcr_B
Probab=20.63 E-value=1.7e+02 Score=18.40 Aligned_cols=50 Identities=20% Similarity=0.105 Sum_probs=32.3
Q ss_pred hhHHHHHHHHHHHHHHHH--hhCCchHHHH---HHHHHHHHHHHHHHHHHHhhhc
Q 030246 20 KDVQFKLKELENGYKSWL--AKQPLPVEAA---IVTATTAINGAAIGAFLGVMTQ 69 (180)
Q Consensus 20 ~~~q~~~~~~~~~~k~~~--~~~~~~~e~~---~~tv~g~~~G~~~G~f~g~v~~ 69 (180)
+++...+++..+++++.. ...+-.-|.. ..|+.+.+.=+++|+++..+..
T Consensus 4 ~~~~~f~~~~~~E~kkV~wptrKp~~~e~~~v~~~t~vv~~~v~~i~~~i~lid~ 58 (65)
T 3bo0_B 4 KATVAFAREARTEVRKVIWPTRKPTKDEYLAVAKVTALGISLLGIIGYIIHVPAT 58 (65)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTTTTCTTHHHHHHHHHHHHHHHHHHHHHHHTTTTH
T ss_pred chHHHHHHHHHHHHhheeccCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 445555677777777643 3322225555 6788888888888888877653
No 5
>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A
Probab=20.42 E-value=31 Score=19.98 Aligned_cols=18 Identities=22% Similarity=0.409 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHhcccchh
Q 030246 116 NAGISCVMKRLRGKEDLQ 133 (180)
Q Consensus 116 ysg~ec~~e~~Rgk~D~~ 133 (180)
|+-++.++.++|..||..
T Consensus 19 ysdvknlikhire~hd~~ 36 (37)
T 2elu_A 19 YSDVKNLIKHIRDAHDPQ 36 (37)
T ss_dssp CSSHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHhcCCC
Confidence 666788899999999864
No 6
>2imj_A Hypothetical protein DUF1348; alpha beta protein, structural genomics, PSI-2, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5} SCOP: d.17.4.23
Probab=19.06 E-value=32 Score=26.67 Aligned_cols=17 Identities=24% Similarity=0.233 Sum_probs=14.2
Q ss_pred HHHHHHHhcccchhHHH
Q 030246 120 SCVMKRLRGKEDLQSSV 136 (180)
Q Consensus 120 ec~~e~~Rgk~D~~N~~ 136 (180)
|.+++++|-.+|.||+=
T Consensus 17 EtA~~KVr~AEDaWNsr 33 (166)
T 2imj_A 17 ESAIEKIRLAEDGWNSR 33 (166)
T ss_dssp HHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhhhccc
Confidence 56778999999999973
No 7
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=12.27 E-value=92 Score=24.08 Aligned_cols=25 Identities=12% Similarity=0.082 Sum_probs=18.8
Q ss_pred HHHHHHHHHHh-cccchhHHH--HHHHH
Q 030246 117 AGISCVMKRLR-GKEDLQSSV--VAAFG 141 (180)
Q Consensus 117 sg~ec~~e~~R-gk~D~~N~~--~aG~~ 141 (180)
++++-.++.+| .+||+.|-+ +.|.+
T Consensus 16 ~~~~~~~~~LR~qrHdf~NkLqvI~GLl 43 (192)
T 1ixm_A 16 ALTNELIHLLGHSRHDWMNKLQLIKGNL 43 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 45677888999 699999965 56653
No 8
>3h8m_A Ephrin type-A receptor 7; SAM domain, kinase,structural genomics, structural genomics consortium, SGC, alternative splicing, ATP-binding; 2.10A {Homo sapiens}
Probab=11.98 E-value=1.2e+02 Score=20.69 Aligned_cols=41 Identities=15% Similarity=0.091 Sum_probs=18.0
Q ss_pred ccccccccccCCCchhhhhHHHHHHHHH-HHHHHHHhhCCch
Q 030246 3 KGNEKVMSLVQLPQKAIKDVQFKLKELE-NGYKSWLAKQPLP 43 (180)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~q~~~~~~~-~~~k~~~~~~~~~ 43 (180)
.||||......+.-.+.+++.++|+.+. .++......+.+-
T Consensus 9 ~~~~~~~~~~~~~~~~~~~V~~WL~~lgL~qY~~~F~~~g~d 50 (90)
T 3h8m_A 9 SGRENLYFQGTPDFTTFCSVGEWLQAIKMERYKDNFTAAGYN 50 (90)
T ss_dssp ----------CCCCCCCSSHHHHHHHTTCGGGHHHHHHTTCC
T ss_pred cccccccCCCCCCCcchhHHHHHHHHCChHHHHHHHHHcCCC
Confidence 5899988777666777788888886544 3333333333333
No 9
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=10.96 E-value=1.1e+02 Score=21.89 Aligned_cols=25 Identities=28% Similarity=0.401 Sum_probs=19.6
Q ss_pred HHHHHHHHHHhcccchhHHH---HHHHH
Q 030246 117 AGISCVMKRLRGKEDLQSSV---VAAFG 141 (180)
Q Consensus 117 sg~ec~~e~~Rgk~D~~N~~---~aG~~ 141 (180)
+.++-+++++|.+.|..|== +||||
T Consensus 17 AaFRRLv~HL~~r~DVQNIDLMnLAGFC 44 (105)
T 2o35_A 17 AVFRRLLEHLRERSDVQNIDLMNLAGFC 44 (105)
T ss_dssp HHHHHHHHHHHHTTTSCHHHHHHHHSCC
T ss_pred HHHHHHHHHHHhCcchhHHHHHHHHHHH
Confidence 45688999999999999853 46665
No 10
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=10.75 E-value=1.2e+02 Score=21.68 Aligned_cols=25 Identities=24% Similarity=0.348 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhcccchhHHH---HHHHH
Q 030246 117 AGISCVMKRLRGKEDLQSSV---VAAFG 141 (180)
Q Consensus 117 sg~ec~~e~~Rgk~D~~N~~---~aG~~ 141 (180)
+.++-+++++|.+.|..|== +||||
T Consensus 16 AaFRrL~~HL~~r~DVQNIDLMnLAGFC 43 (104)
T 3fyb_A 16 AAFRHLLRHLDEHKDVQNIDLMIQADFC 43 (104)
T ss_dssp HHHHHHHHHHHTCTTSCHHHHHHHHSCC
T ss_pred HHHHHHHHHHHhCcchhHHHHHHHHHHH
Confidence 45688999999999999953 46665
Done!