Query 030246
Match_columns 180
No_of_seqs 134 out of 597
Neff 5.9
Searched_HMMs 13730
Date Mon Mar 25 17:26:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030246.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/030246hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2imja1 d.17.4.23 (A:5-159) Hy 16.8 18 0.0013 25.9 0.7 16 120-135 13-28 (155)
2 d2o35a1 a.293.1.1 (A:2-80) Hyp 13.8 40 0.0029 21.5 1.7 25 117-141 14-41 (79)
3 d1t5ja_ a.209.1.1 (A:) Hypothe 7.0 1.8E+02 0.013 21.1 3.6 33 118-150 240-273 (301)
4 d1g3nc2 a.74.1.1 (C:148-253) V 5.7 2.4E+02 0.018 17.7 3.1 36 130-170 22-57 (106)
5 d1d6ga_ g.33.1.1 (A:) Cholecys 5.7 1.1E+02 0.0082 17.3 1.3 13 14-26 31-43 (47)
6 d2hg7a1 d.186.2.1 (A:1-60) Pha 5.6 1.6E+02 0.011 17.5 2.0 17 14-30 38-54 (60)
7 d1kq8a_ a.4.5.14 (A:) HFH-1 (H 4.6 1.5E+02 0.011 18.1 1.4 23 114-136 21-44 (75)
8 d1vp7a_ a.7.13.1 (A:) Exonucle 4.3 2.8E+02 0.02 16.3 2.6 20 14-33 3-22 (68)
9 d2vkva2 a.121.1.1 (A:68-205) T 4.2 3.5E+02 0.026 16.9 3.4 25 20-44 6-30 (138)
10 d1u7ga_ f.44.1.1 (A:) Ammonium 3.6 8.5E+02 0.062 18.5 8.6 20 123-142 246-269 (383)
No 1
>d2imja1 d.17.4.23 (A:5-159) Hypothetical protein PFL3262 {Pseudomonas fluorescens [TaxId: 294]}
Probab=16.79 E-value=18 Score=25.94 Aligned_cols=16 Identities=25% Similarity=0.289 Sum_probs=13.9
Q ss_pred HHHHHHHhcccchhHH
Q 030246 120 SCVMKRLRGKEDLQSS 135 (180)
Q Consensus 120 ec~~e~~Rgk~D~~N~ 135 (180)
|.+++++|-.+|.||+
T Consensus 13 etA~~KVr~AEdaWNs 28 (155)
T d2imja1 13 ESAIEKIRLAEDGWNS 28 (155)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhcc
Confidence 5677899999999997
No 2
>d2o35a1 a.293.1.1 (A:2-80) Hypothetical protein SMc04008 {Rhizobium meliloti [TaxId: 382]}
Probab=13.84 E-value=40 Score=21.48 Aligned_cols=25 Identities=28% Similarity=0.401 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhcccchhHHH---HHHHH
Q 030246 117 AGISCVMKRLRGKEDLQSSV---VAAFG 141 (180)
Q Consensus 117 sg~ec~~e~~Rgk~D~~N~~---~aG~~ 141 (180)
+.++-+++++|.+.|..|== +|||+
T Consensus 14 aaFrrL~~HL~~r~dVQNIDLMnLaGFC 41 (79)
T d2o35a1 14 AVFRRLLEHLRERSDVQNIDLMNLAGFC 41 (79)
T ss_dssp HHHHHHHHHHHHTTTSCHHHHHHHHSCC
T ss_pred HHHHHHHHHHHhCccchhhHHHHHHHHH
Confidence 45788999999999999853 36665
No 3
>d1t5ja_ a.209.1.1 (A:) Hypothetical protein MJ1187 {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=7.00 E-value=1.8e+02 Score=21.10 Aligned_cols=33 Identities=12% Similarity=0.086 Sum_probs=19.1
Q ss_pred HHHHHHHHHhcccch-hHHHHHHHHHhhhhhhcc
Q 030246 118 GISCVMKRLRGKEDL-QSSVVAAFGSGAAFSLVS 150 (180)
Q Consensus 118 g~ec~~e~~Rgk~D~-~N~~~aG~~tGa~l~~~~ 150 (180)
+.+.+...++--.|- -|+.+.|.+.|+.+|..+
T Consensus 240 f~~ai~~av~~GgDtdt~aai~Gal~GA~~G~~~ 273 (301)
T d1t5ja_ 240 FKEGMLKCINAGGDTDSLASMYGAMAGAYYGFKN 273 (301)
T ss_dssp HHHHHHHHHTSCBSHHHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHhChhc
Confidence 445566666633333 366667777777766543
No 4
>d1g3nc2 a.74.1.1 (C:148-253) Viral cyclin {Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]}
Probab=5.71 E-value=2.4e+02 Score=17.73 Aligned_cols=36 Identities=17% Similarity=0.078 Sum_probs=21.3
Q ss_pred cchhHHHHHHHHHhhhhhhccCCCCCchhHHHHHHHHHHHH
Q 030246 130 EDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAI 170 (180)
Q Consensus 130 ~D~~N~~~aG~~tGa~l~~~~g~~~~~~~~~a~~gg~~fa~ 170 (180)
-|+|..-+--.+|-++.-.-.|+ +++.+..+++-++
T Consensus 22 ldfwhhevntlitkalvdpltgs-----lpasiisaagcal 57 (106)
T d1g3nc2 22 LDFWHHEVNTLITKALVDPLTGS-----LPASIISAAGCAL 57 (106)
T ss_dssp HHHHHHHHHHHHHHHHTSTTGGG-----SCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhhCcccCC-----CcHHHHhhcceeE
Confidence 36666666566666666665665 6666655555444
No 5
>d1d6ga_ g.33.1.1 (A:) Cholecystokinin A receptor, N-domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.71 E-value=1.1e+02 Score=17.26 Aligned_cols=13 Identities=15% Similarity=-0.074 Sum_probs=9.6
Q ss_pred CCchhhhhHHHHH
Q 030246 14 LPQKAIKDVQFKL 26 (180)
Q Consensus 14 ~~~~~~~~~q~~~ 26 (180)
|++.|.+|+|+.+
T Consensus 31 d~P~psKewq~av 43 (47)
T d1d6ga_ 31 DQPRPSKEWQPAQ 43 (47)
T ss_dssp CCCSSCSSHHHHH
T ss_pred CCCCCchHHhHHH
Confidence 5566678999884
No 6
>d2hg7a1 d.186.2.1 (A:1-60) Phage-like element PbsX protein XkdW {Bacillus subtilis [TaxId: 1423]}
Probab=5.62 E-value=1.6e+02 Score=17.46 Aligned_cols=17 Identities=18% Similarity=0.253 Sum_probs=12.0
Q ss_pred CCchhhhhHHHHHHHHH
Q 030246 14 LPQKAIKDVQFKLKELE 30 (180)
Q Consensus 14 ~~~~~~~~~q~~~~~~~ 30 (180)
.|+|..+|+++.+++..
T Consensus 38 aP~PTe~EL~~~w~e~q 54 (60)
T d2hg7a1 38 APLPTQAELETWWEELQ 54 (60)
T ss_dssp SCCCCHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHh
Confidence 46777888888865543
No 7
>d1kq8a_ a.4.5.14 (A:) HFH-1 (HNF-3 forkhead homolog-1) {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=4.61 E-value=1.5e+02 Score=18.09 Aligned_cols=23 Identities=22% Similarity=0.235 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHhc-ccchhHHH
Q 030246 114 GVNAGISCVMKRLRG-KEDLQSSV 136 (180)
Q Consensus 114 ~~ysg~ec~~e~~Rg-k~D~~N~~ 136 (180)
-+|..++--...+|. .++|.|++
T Consensus 21 eIy~~i~~~fpy~r~~~~gWkNSI 44 (75)
T d1kq8a_ 21 EINEYLMGKFPFFRGSYTGWRNSV 44 (75)
T ss_dssp HHHHHHHHHCTTGGGTCSCCHHHH
T ss_pred HHHHHHHHhCcccccCCccchhHh
Confidence 355555555556663 67788886
No 8
>d1vp7a_ a.7.13.1 (A:) Exonuclease VII small subunit XseB {Bordetella pertussis [TaxId: 520]}
Probab=4.26 E-value=2.8e+02 Score=16.35 Aligned_cols=20 Identities=10% Similarity=0.081 Sum_probs=11.6
Q ss_pred CCchhhhhHHHHHHHHHHHH
Q 030246 14 LPQKAIKDVQFKLKELENGY 33 (180)
Q Consensus 14 ~~~~~~~~~q~~~~~~~~~~ 33 (180)
|+++++++.-.+||++..++
T Consensus 3 ~~p~sfEe~l~~LE~IV~~L 22 (68)
T d1vp7a_ 3 PLPQDFETALAELESLVSAM 22 (68)
T ss_dssp CBCCSHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHH
Confidence 44556666666666655554
No 9
>d2vkva2 a.121.1.1 (A:68-205) Tetracyclin repressor (Tet-repressor, TetR) {Escherichia coli [TaxId: 562]}
Probab=4.23 E-value=3.5e+02 Score=16.89 Aligned_cols=25 Identities=12% Similarity=0.001 Sum_probs=17.4
Q ss_pred hhHHHHHHHHHHHHHHHHhhCCchH
Q 030246 20 KDVQFKLKELENGYKSWLAKQPLPV 44 (180)
Q Consensus 20 ~~~q~~~~~~~~~~k~~~~~~~~~~ 44 (180)
++||+.|++....+......-++..
T Consensus 6 ~~Wr~~lr~~a~~~r~~~~~hP~~a 30 (138)
T d2vkva2 6 ESWQSFLRNNAMSFRRALLRYRDGA 30 (138)
T ss_dssp CCHHHHHHHHHHHHHHHHHHSTTHH
T ss_pred CCHHHHHHHHHHHHHHHHHHCccHH
Confidence 5788888888887777665555443
No 10
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}
Probab=3.58 E-value=8.5e+02 Score=18.53 Aligned_cols=20 Identities=20% Similarity=0.126 Sum_probs=10.8
Q ss_pred HHHHh-cccchh---HHHHHHHHH
Q 030246 123 MKRLR-GKEDLQ---SSVVAAFGS 142 (180)
Q Consensus 123 ~e~~R-gk~D~~---N~~~aG~~t 142 (180)
+++++ +|-|.. |.+++|.++
T Consensus 246 ~~~~~~~k~~~~~~~nG~LaGLVa 269 (383)
T d1u7ga_ 246 GEWALRGLPSLLGACSGAIAGLVG 269 (383)
T ss_dssp HHHHHHSSCCHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHhhhhhhh
Confidence 34444 566554 666666653
Done!