BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030248
(180 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IWK|A Chain A, Crystal Structure Of Aminoaldehyde Dehydrogenase 1 From
Pisum Sativum (Psamadh1)
pdb|3IWK|B Chain B, Crystal Structure Of Aminoaldehyde Dehydrogenase 1 From
Pisum Sativum (Psamadh1)
pdb|3IWK|C Chain C, Crystal Structure Of Aminoaldehyde Dehydrogenase 1 From
Pisum Sativum (Psamadh1)
pdb|3IWK|D Chain D, Crystal Structure Of Aminoaldehyde Dehydrogenase 1 From
Pisum Sativum (Psamadh1)
pdb|3IWK|E Chain E, Crystal Structure Of Aminoaldehyde Dehydrogenase 1 From
Pisum Sativum (Psamadh1)
pdb|3IWK|F Chain F, Crystal Structure Of Aminoaldehyde Dehydrogenase 1 From
Pisum Sativum (Psamadh1)
pdb|3IWK|G Chain G, Crystal Structure Of Aminoaldehyde Dehydrogenase 1 From
Pisum Sativum (Psamadh1)
pdb|3IWK|H Chain H, Crystal Structure Of Aminoaldehyde Dehydrogenase 1 From
Pisum Sativum (Psamadh1)
pdb|3IWK|I Chain I, Crystal Structure Of Aminoaldehyde Dehydrogenase 1 From
Pisum Sativum (Psamadh1)
pdb|3IWK|J Chain J, Crystal Structure Of Aminoaldehyde Dehydrogenase 1 From
Pisum Sativum (Psamadh1)
pdb|3IWK|K Chain K, Crystal Structure Of Aminoaldehyde Dehydrogenase 1 From
Pisum Sativum (Psamadh1)
pdb|3IWK|L Chain L, Crystal Structure Of Aminoaldehyde Dehydrogenase 1 From
Pisum Sativum (Psamadh1)
Length = 503
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 12 KSLQIRQVLTQGVSLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEP 60
++++I L +G LG IV+ A K L CI+ ++S +L+G P
Sbjct: 319 ENIKISDPLEEGCRLGPIVSEAQYK-KVLNCISSAKSEGATILTGGRRP 366
>pdb|3LF7|A Chain A, Crystal Structure Of Fructosyltransferase (Wild-Type) From
A Japonicus
pdb|3LFI|A Chain A, Crystal Structure Of Fructosyltransferase (Wild-Type) From
A Japonicus In Complex With Glucose
pdb|3LFI|B Chain B, Crystal Structure Of Fructosyltransferase (Wild-Type) From
A Japonicus In Complex With Glucose
Length = 634
Score = 28.5 bits (62), Expect = 1.9, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 62 FKRGDILFLHMSKDPIRAGEI-VVFNVDGREIPIVHRVIKVHE 103
F+ G++LFL + GE+ V +G +PIV +V +H+
Sbjct: 272 FETGNVLFLTEEGHDPQTGEVFVTLGTEGSGLPIVPQVSSIHD 314
>pdb|3LDK|A Chain A, Crystal Structure Of A. Japonicus Cb05
pdb|3LDR|A Chain A, Crystal Structure Of Fructosyltransferase (D191a) From A.
Japonicus In Complex With 1-Kestose
pdb|3LEM|A Chain A, Crystal Structure Of Fructosyltransferase (D191a) From A.
Ja Complex With Nystose
pdb|3LIG|A Chain A, Crystal Structure Of Fructosyltransferase (D191a) From A.
Ja
pdb|3LIH|A Chain A, Crystal Structure Of Fructosyltransferase (D191a) From A.
Japonicus In Complex With Raffinose
Length = 634
Score = 28.5 bits (62), Expect = 1.9, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 62 FKRGDILFLHMSKDPIRAGEI-VVFNVDGREIPIVHRVIKVHE 103
F+ G++LFL + GE+ V +G +PIV +V +H+
Sbjct: 272 FETGNVLFLTEEGHDPQTGEVFVTLGTEGSGLPIVPQVSSIHD 314
>pdb|3P3V|A Chain A, Crystal Structure Of A Pts Dependent
N-Acetyl-Galactosamine-Iib Component (Agav, Spy_0631)
From Streptococcus Pyogenes At 1.65 A Resolution
pdb|3P3V|B Chain B, Crystal Structure Of A Pts Dependent
N-Acetyl-Galactosamine-Iib Component (Agav, Spy_0631)
From Streptococcus Pyogenes At 1.65 A Resolution
Length = 163
Score = 27.7 bits (60), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 9/14 (64%), Positives = 13/14 (92%)
Query: 122 DDRLLYAQGQLWLK 135
D+RL++ QGQLW+K
Sbjct: 13 DERLIHGQGQLWVK 26
>pdb|1F5A|A Chain A, Crystal Structure Of Mammalian Poly(A) Polymerase
Length = 513
Score = 27.7 bits (60), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 119 NYGDDRLLYAQGQLWLKRQHIMGRAVGFLPYVGWVTII 156
N + RL +LW KR +I +GFL V W ++
Sbjct: 216 NIDNFRLTLRAIKLWAKRHNIYSNILGFLGGVSWAXLV 253
>pdb|1Q78|A Chain A, Crystal Structure Of Poly(A) Polymerase In Complex With
3'- Datp And Magnesium Chloride
Length = 514
Score = 27.3 bits (59), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 119 NYGDDRLLYAQGQLWLKRQHIMGRAVGFLPYVGWVTII 156
N + RL +LW KR +I +GFL V W ++
Sbjct: 216 NIDNFRLTLRAIKLWAKRHNIYSNILGFLGGVSWAMLV 253
>pdb|1Q79|A Chain A, Crystal Structure Of Mammalian Poly(A) Polymerase
Length = 514
Score = 27.3 bits (59), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 119 NYGDDRLLYAQGQLWLKRQHIMGRAVGFLPYVGWVTII 156
N + RL +LW KR +I +GFL V W ++
Sbjct: 216 NIDNFRLTLRAIKLWAKRHNIYSNILGFLGGVSWAMLV 253
>pdb|4FYE|A Chain A, Crystal Structure Of A Legionella Phosphoinositide
Phosphatase, Sidf
pdb|4FYF|A Chain A, Structural Basis For Substrate Recognition By A Novel
Legionella Phosphoinositide Phosphatase
pdb|4FYG|A Chain A, Structural Basis For Substrate Recognition By A Novel
Legionella Phosphoinositide Phosphatase
Length = 761
Score = 26.6 bits (57), Expect = 8.7, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Query: 80 GEIVVFN---VDGREIPIVHRVIKVHERQDTGEVEVLTKGDNNYGDDRLLYAQ 129
GE VF +DG+++ +V+ H R TG+ +V+ + NNY D+ + A+
Sbjct: 36 GERQVFKDPMLDGKQVVVVNSQYDKHGRPVTGQPDVIQEA-NNYIDNLVAAAK 87
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.142 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,266,250
Number of Sequences: 62578
Number of extensions: 217409
Number of successful extensions: 427
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 420
Number of HSP's gapped (non-prelim): 13
length of query: 180
length of database: 14,973,337
effective HSP length: 93
effective length of query: 87
effective length of database: 9,153,583
effective search space: 796361721
effective search space used: 796361721
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)