Query 030248
Match_columns 180
No_of_seqs 168 out of 1539
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 17:29:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030248.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030248hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1b12_A Signal peptidase I; ser 99.7 2.1E-18 7.1E-23 142.2 6.8 54 51-104 9-78 (248)
2 1kca_A Repressor protein CI; g 99.3 1.1E-11 3.7E-16 90.0 11.3 83 50-148 15-103 (109)
3 1umu_A UMUD'; induced mutagene 99.3 1.2E-11 4E-16 90.3 10.1 84 50-149 29-113 (116)
4 2hnf_A Repressor protein CI101 99.3 5.5E-11 1.9E-15 88.8 11.2 81 50-146 46-132 (133)
5 1jhf_A LEXA repressor; LEXA SO 99.2 1.4E-10 4.9E-15 91.6 11.1 89 50-152 112-201 (202)
6 3k2z_A LEXA repressor; winged 99.0 4.3E-09 1.5E-13 83.1 11.5 83 50-148 111-194 (196)
7 3bdn_A Lambda repressor; repre 99.0 2.4E-09 8.3E-14 85.9 9.0 83 50-148 142-230 (236)
8 2fjr_A Repressor protein CI; g 97.6 0.00026 8.9E-09 54.4 8.1 75 55-148 112-186 (189)
9 2qjy_C Ubiquinol-cytochrome C 66.9 18 0.0006 27.7 6.8 66 14-97 9-77 (187)
10 3cx5_E Cytochrome B-C1 complex 66.5 20 0.0007 27.3 7.1 31 65-97 61-91 (185)
11 3i4o_A Translation initiation 58.8 3.5 0.00012 27.6 1.2 14 75-88 52-65 (79)
12 1jt8_A EIF-1A, probable transl 52.5 6.1 0.00021 27.7 1.7 11 77-87 59-69 (102)
13 2dgy_A MGC11102 protein; EIF-1 48.9 12 0.00041 26.5 2.8 37 52-88 23-65 (111)
14 1d7q_A Translation initiation 46.7 15 0.0005 27.3 3.0 22 63-84 71-92 (143)
15 1w4s_A Polybromo, polybromo 1 42.6 44 0.0015 24.9 5.3 47 58-104 5-55 (174)
16 1hr0_W Translation initiation 28.9 39 0.0013 21.6 2.6 14 75-88 45-58 (71)
17 1pp9_E Ubiquinol-cytochrome C 28.7 38 0.0013 26.1 2.9 23 75-97 79-101 (196)
18 1yel_A AT1G16640; CESG, protei 27.4 45 0.0015 22.5 2.8 18 74-91 75-92 (104)
19 1v54_M VIIIB, IX, cytochrome C 27.2 20 0.0007 21.4 0.9 13 2-14 31-43 (46)
20 2kku_A Uncharacterized protein 27.1 54 0.0018 24.7 3.4 49 52-100 32-87 (161)
21 2eko_A Histone acetyltransfera 27.1 56 0.0019 22.0 3.2 18 55-72 3-20 (87)
22 1ceu_A Protein (HIV-1 regulato 26.2 23 0.00078 21.7 1.0 18 2-19 17-34 (51)
23 1ueb_A EF-P, TT0860, elongatio 21.8 76 0.0026 24.2 3.5 39 55-98 145-184 (184)
24 2oqk_A Putative translation in 21.1 65 0.0022 22.7 2.7 38 51-88 39-82 (117)
25 3iuw_A Activating signal coint 20.5 81 0.0028 21.1 2.9 24 64-87 24-48 (83)
No 1
>1b12_A Signal peptidase I; serine proteinase, serine-dependant hydrolase, signal peptid processing, protein translocation; HET: 1PN; 1.95A {Escherichia coli} SCOP: b.87.1.2 PDB: 3s04_A* 1t7d_A* 3iiq_A* 1kn9_A*
Probab=99.74 E-value=2.1e-18 Score=142.17 Aligned_cols=54 Identities=24% Similarity=0.421 Sum_probs=47.5
Q ss_pred EEEeCCCccccccCCCEEEEeec---------------CCCCCcCcEEEEEeCCC-CcCEEEEEEEeCCC
Q 030248 51 VVVLSGSMEPGFKRGDILFLHMS---------------KDPIRAGEIVVFNVDGR-EIPIVHRVIKVHER 104 (180)
Q Consensus 51 ~~V~g~SM~Ptl~~GD~v~v~~~---------------~~~~~~GDIVvf~~~~~-~~~~ihRVi~~~~~ 104 (180)
+.|+|+||+|||++||.|++++. ..++++||||+|+.+.. ...++|||++++||
T Consensus 9 ~~v~g~SM~Ptl~~GD~vlv~k~~yg~r~P~~~~~l~~~~~~~rGDIvvf~~p~~~~~~~iKRViglpGD 78 (248)
T 1b12_A 9 FQIPSGSMMPTLLIGDFILVEKFAYGIKDPIYQKTLIETGHPKRGDIVVFKYPEDPKLDYIKRAVGLPGD 78 (248)
T ss_dssp EECCSCTTTTTSCTTEEEEEEESEEEEECGGGSCEEEEECCCCTTCEEEEECTTCTTSEEEEEEEECTTC
T ss_pred EEeccccccccccCCCEEEEEecccCcccccccccccccCCCCCCcEEEEEeCCCCCceEEEEEEeeCCC
Confidence 89999999999999999999983 25789999999998743 35799999999886
No 2
>1kca_A Repressor protein CI; gene regulation, DNA-binding, lambda repressor, protein oligomerization, DNA-looping; 2.91A {Enterobacteria phage lambda} SCOP: b.87.1.1
Probab=99.34 E-value=1.1e-11 Score=89.98 Aligned_cols=83 Identities=14% Similarity=0.234 Sum_probs=65.3
Q ss_pred eEEEeCCCcc------ccccCCCEEEEeecCCCCCcCcEEEEEeCCCCcCEEEEEEEeCCCCCCCeeEEEEecCCCCCCC
Q 030248 50 VVVVLSGSME------PGFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVEVLTKGDNNYGDD 123 (180)
Q Consensus 50 ~~~V~g~SM~------Ptl~~GD~v~v~~~~~~~~~GDIVvf~~~~~~~~~ihRVi~~~~~~~~g~~~~~t~GDnn~~~D 123 (180)
.+.|.|+||+ |+|++||++++++. .+++.||+++++.++ +..++||++...+ .+++.+||+...+
T Consensus 15 ~~~V~GdSM~~~~g~~p~i~~Gd~v~Vd~~-~~~~~Gdivv~~~~~-~~~~vKrl~~~~~-------~~~L~s~N~~y~~ 85 (109)
T 1kca_A 15 WLEVEGNSMTAPTGSKPSFPDGMLILVDPE-QAVEPGDFCIARLGG-DEFTFKKLIRDSG-------QVFLQPLNPQYPM 85 (109)
T ss_dssp EEECCSSTTCCCTTCSSCCCTTCEEEEETT-SCCCTTCEEEEECST-TCEEEEEEEEETT-------EEEEECSSTTSCC
T ss_pred EEEEeCcCcCCCCCCCCeeCCCCEEEEecC-CcCCCCCEEEEEECC-CeEEEEEEEEeCC-------EEEEEECCCCCCC
Confidence 4799999999 99999999999984 468999999999876 3579999998532 5789999755443
Q ss_pred chhhccCCccccceeEeeEEEEEec
Q 030248 124 RLLYAQGQLWLKRQHIMGRAVGFLP 148 (180)
Q Consensus 124 ~~~y~~~~~~v~~~~IiG~v~~~iP 148 (180)
... -+..+|+|+|++.+.
T Consensus 86 -~~~------~~~~~IiG~Vv~~~~ 103 (109)
T 1kca_A 86 -IPC------NESCSVVGKVIASQW 103 (109)
T ss_dssp -EEC------CTTCEEEEEEEEEEC
T ss_pred -EEc------CCCcEEEEEEEEEEe
Confidence 221 145789999998753
No 3
>1umu_A UMUD'; induced mutagenesis, SOS mutagenesis, DNA repair, beta- lactamase cleavage reaction, LEXA repressor, lambda CI; 2.50A {Escherichia coli} SCOP: b.87.1.1 PDB: 1i4v_A 1ay9_A
Probab=99.32 E-value=1.2e-11 Score=90.32 Aligned_cols=84 Identities=20% Similarity=0.213 Sum_probs=64.3
Q ss_pred eEEEeCCCccc-cccCCCEEEEeecCCCCCcCcEEEEEeCCCCcCEEEEEEEeCCCCCCCeeEEEEecCCCCCCCchhhc
Q 030248 50 VVVVLSGSMEP-GFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVEVLTKGDNNYGDDRLLYA 128 (180)
Q Consensus 50 ~~~V~g~SM~P-tl~~GD~v~v~~~~~~~~~GDIVvf~~~~~~~~~ihRVi~~~~~~~~g~~~~~t~GDnn~~~D~~~y~ 128 (180)
.+.|.|+||+| ++++||++++++. .+++.||+++++.++ ..++||+...+ .+++++||+...+ ..+.
T Consensus 29 ~~~v~GdSM~p~~i~~Gd~v~vd~~-~~~~~gdivv~~~~~--~~~vKr~~~~~--------~~~L~s~N~~y~~-~~i~ 96 (116)
T 1umu_A 29 FVKASGDSMIDGGISDGDLLIVDSA-ITASHGDIVIAAVDG--EFTVKKLQLRP--------TVQLIPMNSAYSP-ITIS 96 (116)
T ss_dssp EEECCSSTTGGGTCCTTCEEEEETT-SCCCTTCEEEEEETT--EEEEEEEECSS--------SCEEECSSTTSCC-EECC
T ss_pred EEEECCCCcCCCCCCCCCEEEEEcC-CCCCCCCEEEEEECC--EEEEEEEEeCC--------cEEEECCCCCCCC-EEcC
Confidence 47899999999 8999999999984 458999999999876 47999999753 3778899754433 2221
Q ss_pred cCCccccceeEeeEEEEEecC
Q 030248 129 QGQLWLKRQHIMGRAVGFLPY 149 (180)
Q Consensus 129 ~~~~~v~~~~IiG~v~~~iP~ 149 (180)
. -+.-+|+|+|++.+..
T Consensus 97 ~----~~~~~IiG~Vv~~~r~ 113 (116)
T 1umu_A 97 S----EDTLDVFGVVIHVVKA 113 (116)
T ss_dssp T----TSCEEEEEEEEEEEC-
T ss_pred C----CCeEEEEEEEEEEEEe
Confidence 1 1356899999987643
No 4
>2hnf_A Repressor protein CI101-229DM-K192A; viral protein; 1.80A {Escherichia coli} PDB: 2ho0_A 1f39_A
Probab=99.26 E-value=5.5e-11 Score=88.85 Aligned_cols=81 Identities=14% Similarity=0.218 Sum_probs=63.9
Q ss_pred eEEEeCCCcc------ccccCCCEEEEeecCCCCCcCcEEEEEeCCCCcCEEEEEEEeCCCCCCCeeEEEEecCCCCCCC
Q 030248 50 VVVVLSGSME------PGFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVEVLTKGDNNYGDD 123 (180)
Q Consensus 50 ~~~V~g~SM~------Ptl~~GD~v~v~~~~~~~~~GDIVvf~~~~~~~~~ihRVi~~~~~~~~g~~~~~t~GDnn~~~D 123 (180)
.+.|.|+||+ |+|++||++++++. .+++.||+++++.++. ..++||+....+ .+.+++||+...+
T Consensus 46 ~~~V~GdSM~~~~g~~p~i~~Gd~v~vd~~-~~~~~Gdivv~~~~~~-~~~vKrl~~~~~-------~~~L~s~N~~y~~ 116 (133)
T 2hnf_A 46 WLEVEGNSMTTPTGSKTSFPDGMLILVDPE-QAVEPGDFCIARLGGD-EFTFAKLIRDSG-------QVFLQPLNPQYPM 116 (133)
T ss_dssp EEECCSSTTCCC---CCCCCTTCEEEEETT-SCCCTTSEEEEEETTT-EEEEEEEEEETT-------EEEEECSSTTSCC
T ss_pred EEEEeCCCcCCCcCCCCccCCCCEEEEccC-CCCCCCCEEEEEECCC-EEEEEEEEEeCC-------eEEEEECCCCCCC
Confidence 4789999999 99999999999984 5689999999998763 579999997532 5889999755443
Q ss_pred chhhccCCccccceeEeeEEEEE
Q 030248 124 RLLYAQGQLWLKRQHIMGRAVGF 146 (180)
Q Consensus 124 ~~~y~~~~~~v~~~~IiG~v~~~ 146 (180)
... -.+.+|+|+|++.
T Consensus 117 -~~~------~~~~~IiG~Vv~~ 132 (133)
T 2hnf_A 117 -IPC------NESCSVVGKVIAS 132 (133)
T ss_dssp -EEC------STTEEEEEEEEEE
T ss_pred -EEc------CCCCEEEEEEEEE
Confidence 221 1467899999874
No 5
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=99.19 E-value=1.4e-10 Score=91.64 Aligned_cols=89 Identities=26% Similarity=0.334 Sum_probs=65.4
Q ss_pred eEEEeCCCcccc-ccCCCEEEEeecCCCCCcCcEEEEEeCCCCcCEEEEEEEeCCCCCCCeeEEEEecCCCCCCCchhhc
Q 030248 50 VVVVLSGSMEPG-FKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVEVLTKGDNNYGDDRLLYA 128 (180)
Q Consensus 50 ~~~V~g~SM~Pt-l~~GD~v~v~~~~~~~~~GDIVvf~~~~~~~~~ihRVi~~~~~~~~g~~~~~t~GDnn~~~D~~~y~ 128 (180)
.+.|.|+||+|+ |++||++++++. .+++.||++++..++ ..++||+.. +++ .+.+.+||+. +.+..+.
T Consensus 112 ~~~v~GdSM~p~~i~~Gd~v~vd~~-~~~~~G~i~v~~~~~--~~~vKrl~~-~~~------~~~l~s~N~~-y~~~~~~ 180 (202)
T 1jhf_A 112 LLRVSGMSMKDIGIMDGDLLAVHKT-QDVRNGQVVVARIDD--EVTVKRLKK-QGN------KVELLPENSE-FKPIVVD 180 (202)
T ss_dssp EEECCSSTTGGGTCCTTCEEEEEEC-SCCCTTSEEEEEETT--EEEEEEEEE-ETT------EEEEECSSTT-CCCEEEE
T ss_pred EEEECCCCCCCCCCCCCCEEEEecc-CCcCCCeEEEEEECC--EEEEEEEEE-eCC------EEEEEECCCC-CCCEEcc
Confidence 468899999999 999999999984 468999999999865 479999994 443 6889999744 3333221
Q ss_pred cCCccccceeEeeEEEEEecCcce
Q 030248 129 QGQLWLKRQHIMGRAVGFLPYVGW 152 (180)
Q Consensus 129 ~~~~~v~~~~IiG~v~~~iP~~G~ 152 (180)
.. -..-+|+|+|++.+...+|
T Consensus 181 ~~---~~~~~IiG~Vv~~~r~~~~ 201 (202)
T 1jhf_A 181 LR---QQSFTIEGLAVGVIRNGDW 201 (202)
T ss_dssp TT---TSCEEEEEEEEEEEEC---
T ss_pred CC---CCceEEEEEEEEEEEcccc
Confidence 11 1356799999998766554
No 6
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=98.99 E-value=4.3e-09 Score=83.10 Aligned_cols=83 Identities=23% Similarity=0.364 Sum_probs=64.7
Q ss_pred eEEEeCCCc-cccccCCCEEEEeecCCCCCcCcEEEEEeCCCCcCEEEEEEEeCCCCCCCeeEEEEecCCCCCCCchhhc
Q 030248 50 VVVVLSGSM-EPGFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVEVLTKGDNNYGDDRLLYA 128 (180)
Q Consensus 50 ~~~V~g~SM-~Ptl~~GD~v~v~~~~~~~~~GDIVvf~~~~~~~~~ihRVi~~~~~~~~g~~~~~t~GDnn~~~D~~~y~ 128 (180)
.+.|.|+|| +|++.+||++++++. ..++.||++++..++ ..++||+....+ .+.+..||... .+..++
T Consensus 111 ~l~v~GdSM~~p~i~~GD~viv~~~-~~~~~G~ivv~~~~~--~~~vKr~~~~~~-------~~~L~~~N~~y-~~i~i~ 179 (196)
T 3k2z_A 111 LLKVKGESMIEEHICDGDLVLVRRQ-DWAQNGDIVAAMVDG--EVTLAKFYQRGD-------TVELRPANREM-SSMFFR 179 (196)
T ss_dssp EEECCSSTTGGGTCCTTCEEEEEEC-SCCCTTCEEEEEETT--EEEEEEEEEETT-------EEEEECSCTTS-CCEEEE
T ss_pred EEEEeCCCcCCCCCCCCCEEEEecc-CcCCCCCEEEEEECC--cEEEEEEEEECC-------EEEEEECCCCC-CCEEec
Confidence 478999999 699999999999984 568999999999876 479999987532 68899997543 333221
Q ss_pred cCCccccceeEeeEEEEEec
Q 030248 129 QGQLWLKRQHIMGRAVGFLP 148 (180)
Q Consensus 129 ~~~~~v~~~~IiG~v~~~iP 148 (180)
-..-.|+|+|++.+.
T Consensus 180 -----~~~~~i~G~Vv~~~r 194 (196)
T 3k2z_A 180 -----AEKVKILGKVVGVFR 194 (196)
T ss_dssp -----GGGCEEEEEEEEEEE
T ss_pred -----CCCEEEEEEEEEEEE
Confidence 245689999998764
No 7
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}
Probab=98.95 E-value=2.4e-09 Score=85.91 Aligned_cols=83 Identities=14% Similarity=0.241 Sum_probs=62.9
Q ss_pred eEEEeCCCcc------ccccCCCEEEEeecCCCCCcCcEEEEEeCCCCcCEEEEEEEeCCCCCCCeeEEEEecCCCCCCC
Q 030248 50 VVVVLSGSME------PGFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVEVLTKGDNNYGDD 123 (180)
Q Consensus 50 ~~~V~g~SM~------Ptl~~GD~v~v~~~~~~~~~GDIVvf~~~~~~~~~ihRVi~~~~~~~~g~~~~~t~GDnn~~~D 123 (180)
.+.|.|+||+ |+|.+||+|+|++. .+++.||++++..++. ..++||+...++ .+++..||.. +.
T Consensus 142 ~l~V~GdSM~~~~g~~P~i~~Gd~v~vd~~-~~~~~g~ivv~~~~~~-~~~vKrl~~~~~-------~~~L~s~N~~-y~ 211 (236)
T 3bdn_A 142 WLEVEGNSMTAPTGSKPSFPDGMLILVDPE-QAVEPGDFCIARLGGD-EFTFKKLIRGSG-------QVFLQPLNPQ-YP 211 (236)
T ss_dssp EEECCSSSSCCCSSCSSCCCSSCEEEECCS-SCCCTTSEEEEESTTT-CCCCEEEECCSS-------SCEEECSSTT-SC
T ss_pred EEEEeCCCcCCCCCCCCcCCCCCEEEECCC-CCCCCCcEEEEEECCC-eEEEEEEEEcCC-------cEEEEeCCCC-CC
Confidence 3589999999 99999999999984 4789999999987643 479999997433 3668899744 33
Q ss_pred chhhccCCccccceeEeeEEEEEec
Q 030248 124 RLLYAQGQLWLKRQHIMGRAVGFLP 148 (180)
Q Consensus 124 ~~~y~~~~~~v~~~~IiG~v~~~iP 148 (180)
+..+. ..-.|+|+|++.+.
T Consensus 212 ~~~~~------~~~~IiG~Vv~~~~ 230 (236)
T 3bdn_A 212 MIPCN------ESCSVVGKVIASQW 230 (236)
T ss_dssp CBC--------CCCEEEEEEEECCC
T ss_pred CeecC------CCcEEEEEEEEEEc
Confidence 33221 45789999998754
No 8
>2fjr_A Repressor protein CI; genetic switch, regulation, cooperativity, transcription regulator; 1.95A {Enterobacteria phage 186} PDB: 2fkd_A
Probab=97.57 E-value=0.00026 Score=54.44 Aligned_cols=75 Identities=15% Similarity=0.238 Sum_probs=56.2
Q ss_pred CCCccccccCCCEEEEeecCCCCCcCcEEEEEeCCCCcCEEEEEEEeCCCCCCCeeEEEEecCCCCCCCchhhccCCccc
Q 030248 55 SGSMEPGFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVEVLTKGDNNYGDDRLLYAQGQLWL 134 (180)
Q Consensus 55 g~SM~Ptl~~GD~v~v~~~~~~~~~GDIVvf~~~~~~~~~ihRVi~~~~~~~~g~~~~~t~GDnn~~~D~~~y~~~~~~v 134 (180)
+++|.+.-.+||+|+|++. ....|+++++..++ ..++||+...+++ .+.+..||. +..++ .
T Consensus 112 ~~~~~~v~~~Gd~v~Vd~~--~~~~g~i~vv~~~g--~~~vKrl~~~~~~------~i~L~s~N~----~~~i~-----~ 172 (189)
T 2fjr_A 112 LTDGMAIRSEGKIYFVDKQ--ASLSDGLWLVDIKG--AISIRELTKLPGR------KLHVAGGKV----PFECG-----I 172 (189)
T ss_dssp CSSEEEEEETTEEEEEETT--CCSCSEEEEEEETT--EEEEEEEEEETTT------EEEEESSSS----CEEEE-----T
T ss_pred CCCeEEEeeCCcEEEEEcC--CccCCCEEEEEeCC--eEEEEEEEECCCC------EEEEEeCCC----CeEec-----c
Confidence 3466666689999999986 47889999999876 4799999986543 688899974 22211 1
Q ss_pred cceeEeeEEEEEec
Q 030248 135 KRQHIMGRAVGFLP 148 (180)
Q Consensus 135 ~~~~IiG~v~~~iP 148 (180)
..-.|+|+|++.+.
T Consensus 173 ~~i~IiG~Vv~~~r 186 (189)
T 2fjr_A 173 DDIKTLGRVVGVYS 186 (189)
T ss_dssp TSSEEEEEEEEEEE
T ss_pred cceEEEEEEEEEEE
Confidence 45679999998754
No 9
>2qjy_C Ubiquinol-cytochrome C reductase iron-sulfur SUBU; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM TM helix 1 N-TERM TM helix; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter sphaeroides} PDB: 2fyn_C* 2qjk_C* 2qjp_C* 1zrt_E* 2yiu_C*
Probab=66.85 E-value=18 Score=27.70 Aligned_cols=66 Identities=18% Similarity=0.275 Sum_probs=37.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCeEEEeCCCccccccC---CCEEEEeecCCCCCcCcEEEEEeCCC
Q 030248 14 LQIRQVLTQGVSLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEPGFKR---GDILFLHMSKDPIRAGEIVVFNVDGR 90 (180)
Q Consensus 14 ~~~r~~~~~i~~i~~~i~v~~li~~~l~~~~~~~~p~~~V~g~SM~Ptl~~---GD~v~v~~~~~~~~~GDIVvf~~~~~ 90 (180)
+..|+++......+.++..+.+++.++. ||.|.-.. + .+.+ .-++++.|+.+.+...++
T Consensus 9 ~~RR~Fl~~~~~~~~~~~a~~~~~p~v~---------------~~~p~~~~~a~~-~v~v--~ls~l~~G~~~~v~~~g~ 70 (187)
T 2qjy_C 9 GTRRDFLYYATAGAGAVATGAAVWPLIN---------------QMNPSADVQALA-SIFV--DVSSVEPGVQLTVKFLGK 70 (187)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------TTSCCTTTSCCC-CEEE--ECTTCCTTEEEEEEETTE
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHH---------------hcCCchhhcccc-cEEE--EHHHCCCCCeEEEEECCE
Confidence 5567777766554444444444444433 34443322 2 2333 246789999999988876
Q ss_pred CcCEEEE
Q 030248 91 EIPIVHR 97 (180)
Q Consensus 91 ~~~~ihR 97 (180)
...+.||
T Consensus 71 pv~i~rr 77 (187)
T 2qjy_C 71 PIFIRRR 77 (187)
T ss_dssp EEEEEEC
T ss_pred EEEEEEC
Confidence 5444444
No 10
>3cx5_E Cytochrome B-C1 complex subunit rieske, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: b.33.1.1 f.23.12.1 PDB: 1kb9_E* 1kyo_E* 1p84_E* 2ibz_E* 1ezv_E* 3cxh_E*
Probab=66.48 E-value=20 Score=27.31 Aligned_cols=31 Identities=26% Similarity=0.288 Sum_probs=19.6
Q ss_pred CCEEEEeecCCCCCcCcEEEEEeCCCCcCEEEE
Q 030248 65 GDILFLHMSKDPIRAGEIVVFNVDGREIPIVHR 97 (180)
Q Consensus 65 GD~v~v~~~~~~~~~GDIVvf~~~~~~~~~ihR 97 (180)
...+-++ .++++.|+.+.++..++...++||
T Consensus 61 ~~~v~V~--~s~l~~G~~~~v~~~g~pv~v~r~ 91 (185)
T 3cx5_E 61 MAKVEVN--LAAIPLGKNVVVKWQGKPVFIRHR 91 (185)
T ss_dssp CCCEEEE--GGGCCTTCEEEEEETTEEEEEEEC
T ss_pred cCcEEEE--HHHCCCCCeEEEEECCeEEEEEEC
Confidence 4455553 356788998888887765334443
No 11
>3i4o_A Translation initiation factor IF-1; cytoplasm, protein biosynthesis; 1.47A {Mycobacterium tuberculosis} SCOP: b.40.4.5
Probab=58.84 E-value=3.5 Score=27.63 Aligned_cols=14 Identities=21% Similarity=0.169 Sum_probs=9.4
Q ss_pred CCCCcCcEEEEEeC
Q 030248 75 DPIRAGEIVVFNVD 88 (180)
Q Consensus 75 ~~~~~GDIVvf~~~ 88 (180)
-.+.+||.|.+...
T Consensus 52 I~Il~GD~V~ve~~ 65 (79)
T 3i4o_A 52 IRILPEDRVVVELS 65 (79)
T ss_dssp CCCCTTCEEEEEEE
T ss_pred ccCCCCCEEEEEEC
Confidence 34677888777654
No 12
>1jt8_A EIF-1A, probable translation initiation factor 1A; beta barrel, translation factor; NMR {Methanocaldococcus jannaschii} SCOP: b.40.4.5
Probab=52.45 E-value=6.1 Score=27.70 Aligned_cols=11 Identities=27% Similarity=0.782 Sum_probs=6.4
Q ss_pred CCcCcEEEEEe
Q 030248 77 IRAGEIVVFNV 87 (180)
Q Consensus 77 ~~~GDIVvf~~ 87 (180)
+.+||.|+...
T Consensus 59 I~~GD~VlVe~ 69 (102)
T 1jt8_A 59 VREGDVVIVKP 69 (102)
T ss_dssp CCSCEEEEECC
T ss_pred ecCCCEEEEEe
Confidence 55666666643
No 13
>2dgy_A MGC11102 protein; EIF-1A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=48.87 E-value=12 Score=26.53 Aligned_cols=37 Identities=11% Similarity=0.214 Sum_probs=20.0
Q ss_pred EEeCCCccc-cccCCCEEEEeec-----CCCCCcCcEEEEEeC
Q 030248 52 VVLSGSMEP-GFKRGDILFLHMS-----KDPIRAGEIVVFNVD 88 (180)
Q Consensus 52 ~V~g~SM~P-tl~~GD~v~v~~~-----~~~~~~GDIVvf~~~ 88 (180)
...|+.|.- .+.+|..+++.-+ .--+.+||.|+....
T Consensus 23 ~~lgn~~f~V~l~nG~~~la~i~GK~Rk~IwI~~GD~VlVe~~ 65 (111)
T 2dgy_A 23 RTPGNNLHEVETAQGQRFLVSMPSKYRKNIWIKRGDFLIVDPI 65 (111)
T ss_dssp ECCSSSEEEEECTTSCEEEEECCTTCCSCCCCCSSCEEEEEEC
T ss_pred EeCCCCEEEEEeCCCCEEEEEechhhcccEEEcCCCEEEEEec
Confidence 334444443 2456666666431 223667888877654
No 14
>1d7q_A Translation initiation factor 1A; OB-fold, beta-barrel, RNA-binding protein, gene regulation; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=46.66 E-value=15 Score=27.34 Aligned_cols=22 Identities=9% Similarity=0.339 Sum_probs=12.1
Q ss_pred cCCCEEEEeecCCCCCcCcEEE
Q 030248 63 KRGDILFLHMSKDPIRAGEIVV 84 (180)
Q Consensus 63 ~~GD~v~v~~~~~~~~~GDIVv 84 (180)
.+||.|+|..+..+..+|+|+-
T Consensus 71 ~~GD~VlVe~~~yd~~KG~Ii~ 92 (143)
T 1d7q_A 71 NTSDIILVGLRDYQDNKADVIL 92 (143)
T ss_dssp CTTCEEEEECSSSSSSCCEEEE
T ss_pred cCCCEEEEeeccCCCCeEEEEE
Confidence 4566666665444455565544
No 15
>1w4s_A Polybromo, polybromo 1 protein; BAH, bromo-associated homology domain, chromatin remodelling, PBAF, SWI/SNF-B, RSC, nuclear protein; 1.55A {Gallus gallus}
Probab=42.62 E-value=44 Score=24.92 Aligned_cols=47 Identities=11% Similarity=0.097 Sum_probs=22.3
Q ss_pred ccccccCCCEEEEee---cCCCCCcCcEEEEEeCCC-CcCEEEEEEEeCCC
Q 030248 58 MEPGFKRGDILFLHM---SKDPIRAGEIVVFNVDGR-EIPIVHRVIKVHER 104 (180)
Q Consensus 58 M~Ptl~~GD~v~v~~---~~~~~~~GDIVvf~~~~~-~~~~ihRVi~~~~~ 104 (180)
.+|-...+++.+.+. ....++.||-|.++.++. ..++|-||..+-.+
T Consensus 5 g~~~~~~~~r~~y~~~~~~g~~~~vGD~V~v~~~~~~~~p~I~rI~~i~~~ 55 (174)
T 1w4s_A 5 GSAGLSSLHRTYSQDCSFKNSMYHVGDYVYVEPAEANLQPHIVCIERLWED 55 (174)
T ss_dssp ---------------------CCCTTCEEEECCSSTTSCCEEEEEEEEEEC
T ss_pred CCccccCCCcEEeEEEEECCEEEECCCEEEEeCCCCCCCCEEEEEEEEEEc
Confidence 346666677766543 345688899999887653 35789999887654
No 16
>1hr0_W Translation initiation factor; ribosomal subunit, ribosome, IF1; 3.20A {Escherichia coli} SCOP: b.40.4.5 PDB: 1zo1_W
Probab=28.91 E-value=39 Score=21.56 Aligned_cols=14 Identities=29% Similarity=0.363 Sum_probs=9.4
Q ss_pred CCCCcCcEEEEEeC
Q 030248 75 DPIRAGEIVVFNVD 88 (180)
Q Consensus 75 ~~~~~GDIVvf~~~ 88 (180)
-.+.+||.|.+...
T Consensus 45 i~i~~GD~V~ve~~ 58 (71)
T 1hr0_W 45 IRILPGDRVVVEIT 58 (71)
T ss_dssp CCCCTTCEEEEECC
T ss_pred cCCCCCCEEEEEEE
Confidence 34567888888744
No 17
>1pp9_E Ubiquinol-cytochrome C reductase iron-sulfur SUBU mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: b.33.1.1 f.23.12.1 PDB: 1bgy_E* 1be3_E* 1l0n_E* 1ntk_E* 1ntm_E* 1ntz_E* 1nu1_E* 1l0l_E* 1ppj_E* 1qcr_E* 1sqb_E* 1sqp_E* 1sqq_E* 1sqv_E* 1sqx_E* 2a06_E* 2fyu_E* 2ybb_E* 1bcc_E* 2bcc_E* ...
Probab=28.66 E-value=38 Score=26.11 Aligned_cols=23 Identities=26% Similarity=0.495 Sum_probs=15.0
Q ss_pred CCCCcCcEEEEEeCCCCcCEEEE
Q 030248 75 DPIRAGEIVVFNVDGREIPIVHR 97 (180)
Q Consensus 75 ~~~~~GDIVvf~~~~~~~~~ihR 97 (180)
+++..|+.+.|+..++...++||
T Consensus 79 s~l~~G~~~~v~~~G~pV~V~r~ 101 (196)
T 1pp9_E 79 SDIPEGKNMAFKWRGKPLFVRHR 101 (196)
T ss_dssp GGSCTTCEEEEEETTEEEEEEEC
T ss_pred HHCCCCCeEEEEECCEEEEEEEC
Confidence 55777888888777665334444
No 18
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=27.35 E-value=45 Score=22.54 Aligned_cols=18 Identities=17% Similarity=0.353 Sum_probs=14.9
Q ss_pred CCCCCcCcEEEEEeCCCC
Q 030248 74 KDPIRAGEIVVFNVDGRE 91 (180)
Q Consensus 74 ~~~~~~GDIVvf~~~~~~ 91 (180)
...++.||+++|+..+..
T Consensus 75 ~~~L~~GD~lvF~~~~~~ 92 (104)
T 1yel_A 75 DNNLEDGKYLQFIYDRDR 92 (104)
T ss_dssp HHTCCTTCEEEEEECSSS
T ss_pred HcCCCCCCEEEEEEcCCC
Confidence 357999999999987654
No 19
>1v54_M VIIIB, IX, cytochrome C oxidase polypeptide VIII-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.7.1 PDB: 1oco_M* 1occ_M* 1ocz_M* 1ocr_M* 1v55_M* 2dyr_M* 2dys_M* 2eij_M* 2eik_M* 2eil_M* 2eim_M* 2ein_M* 2occ_M* 2ybb_X* 2zxw_M* 3abk_M* 3abl_M* 3abm_M* 3ag1_M* 3ag2_M* ...
Probab=27.18 E-value=20 Score=21.43 Aligned_cols=13 Identities=23% Similarity=0.603 Sum_probs=11.9
Q ss_pred cchHHHHHHHHhh
Q 030248 2 GWIGESIESIKSL 14 (180)
Q Consensus 2 ~~~~~~~~~~~~~ 14 (180)
+|++-++|+||+.
T Consensus 31 gWVLshL~~YKk~ 43 (46)
T 1v54_M 31 GWVLYHLDNYKKS 43 (46)
T ss_dssp HHHHHTHHHHHTC
T ss_pred HHHHHHHHHhccc
Confidence 7999999999985
No 20
>2kku_A Uncharacterized protein; alpha/beta protein, structural genomics, PSI-2, protein STRU initiative; NMR {Archaeoglobus fulgidus}
Probab=27.09 E-value=54 Score=24.74 Aligned_cols=49 Identities=20% Similarity=0.293 Sum_probs=33.8
Q ss_pred EEeCCCccccccCCCEEEEee--cCCCCCcCcEEEEEeCCCC-----cCEEEEEEE
Q 030248 52 VVLSGSMEPGFKRGDILFLHM--SKDPIRAGEIVVFNVDGRE-----IPIVHRVIK 100 (180)
Q Consensus 52 ~V~g~SM~Ptl~~GD~v~v~~--~~~~~~~GDIVvf~~~~~~-----~~~ihRVi~ 100 (180)
.|+-.=|+--++.|..+++.+ ....+++||.|+|...... ..-|++|+.
T Consensus 32 SIkpey~~rIf~~GkK~flrr~~v~~~l~~Gd~vviYaS~P~~~iVGea~I~~Ii~ 87 (161)
T 2kku_A 32 PIPKRFMDRFFKKGKDVFVKPATVWKELKPGMKFVFYQSHEDTGFVGEARIKRVVL 87 (161)
T ss_dssp CCSSSTTHHHHHHSCEEEEESSCSCTTCCTTEEEEECCCSTTCBCCEEEEEEEEEE
T ss_pred ecCHHHHHHHHhcCceEEEeccCcccccCCCCEEEEEEcCCCcEEEEEEEEEEEEe
Confidence 444455555566898888877 3347999998888765422 457888886
No 21
>2eko_A Histone acetyltransferase htatip; chromo domain, histone tail, chromatin organization modifier, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.08 E-value=56 Score=21.97 Aligned_cols=18 Identities=28% Similarity=0.097 Sum_probs=12.9
Q ss_pred CCCccccccCCCEEEEee
Q 030248 55 SGSMEPGFKRGDILFLHM 72 (180)
Q Consensus 55 g~SM~Ptl~~GD~v~v~~ 72 (180)
++|=.|.+..|+.+.+..
T Consensus 3 ~~~~~~~~~vG~kv~v~~ 20 (87)
T 2eko_A 3 SGSSGGEIIEGCRLPVLR 20 (87)
T ss_dssp CCCSSCSCCTTCEEEBCE
T ss_pred cccccccccCCCEEEEEE
Confidence 346667888888888765
No 22
>1ceu_A Protein (HIV-1 regulatory protein N-terminal domain VPR); helical domain, amphipaticity, viral protein; NMR {Synthetic} SCOP: j.11.1.1 PDB: 1fi0_A
Probab=26.18 E-value=23 Score=21.69 Aligned_cols=18 Identities=28% Similarity=0.564 Sum_probs=15.4
Q ss_pred cchHHHHHHHHhhhHHHH
Q 030248 2 GWIGESIESIKSLQIRQV 19 (180)
Q Consensus 2 ~~~~~~~~~~~~~~~r~~ 19 (180)
.|+.+.+|++|+-..|++
T Consensus 17 eW~le~LeElk~EAvrHF 34 (51)
T 1ceu_A 17 DWTLELLEELKNEAVRHF 34 (51)
T ss_dssp HHHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHHHHHHHHHhC
Confidence 499999999999877664
No 23
>1ueb_A EF-P, TT0860, elongation factor P; beta barrel, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.65A {Thermus thermophilus} SCOP: b.34.5.2 b.40.4.5 b.40.4.5 PDB: 3huw_V 3huy_V
Probab=21.80 E-value=76 Score=24.18 Aligned_cols=39 Identities=23% Similarity=0.412 Sum_probs=28.3
Q ss_pred CCCccc-cccCCCEEEEeecCCCCCcCcEEEEEeCCCCcCEEEEE
Q 030248 55 SGSMEP-GFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRV 98 (180)
Q Consensus 55 g~SM~P-tl~~GD~v~v~~~~~~~~~GDIVvf~~~~~~~~~ihRV 98 (180)
++++.| +++.|-.|-|- .-++.||.|.......+ |+.|+
T Consensus 145 ~~~~KpA~letG~~v~VP---~fi~~Gd~I~vdT~~g~--Y~~R~ 184 (184)
T 1ueb_A 145 SGGSKPATLETGAVVQVP---LFVEPGEVIKVDTRTGE--YVGRA 184 (184)
T ss_dssp SCSEEEEEETTSCEEEEE---TTCCTTCEEEEETTTTE--EEEEC
T ss_pred CCCCccEEEcCCCEEEeC---CcCcCCCEEEEECCCCe--EeccC
Confidence 456666 56778777773 34789999999877654 88884
No 24
>2oqk_A Putative translation initiation factor EIF-1A; malaria, eukaryotic initiation facto SGC, structural genomics; 1.80A {Cryptosporidium parvum iowa II}
Probab=21.13 E-value=65 Score=22.71 Aligned_cols=38 Identities=18% Similarity=0.232 Sum_probs=23.0
Q ss_pred EEEeCCCcccc-ccCCCEEEEeec-----CCCCCcCcEEEEEeC
Q 030248 51 VVVLSGSMEPG-FKRGDILFLHMS-----KDPIRAGEIVVFNVD 88 (180)
Q Consensus 51 ~~V~g~SM~Pt-l~~GD~v~v~~~-----~~~~~~GDIVvf~~~ 88 (180)
+...|++|+=. +.+|..++..-+ .-.+.+||.|.+...
T Consensus 39 i~~lgn~~y~V~~~dG~~~l~~i~GK~Rk~I~i~~GD~V~ve~~ 82 (117)
T 2oqk_A 39 QRMLGNGRLDAYCFDGQKRLCHIRGKMRKKVWVNPGDIVLVSLR 82 (117)
T ss_dssp EEEEETTEEEEEETTSCEEEEECCHHHHHHSCCCTTCEEEEEEC
T ss_pred EEEcCCCEEEEEeCCCCEEEEEEcCceecCCcCCCCCEEEEEEE
Confidence 45555566654 456666665421 234668999999865
No 25
>3iuw_A Activating signal cointegrator; NP_814290.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative; HET: MSE; 1.58A {Enterococcus faecalis V583}
Probab=20.52 E-value=81 Score=21.07 Aligned_cols=24 Identities=13% Similarity=0.372 Sum_probs=15.9
Q ss_pred CCCEEE-EeecCCCCCcCcEEEEEe
Q 030248 64 RGDILF-LHMSKDPIRAGEIVVFNV 87 (180)
Q Consensus 64 ~GD~v~-v~~~~~~~~~GDIVvf~~ 87 (180)
.|..-+ +++..+++++||++.|+.
T Consensus 24 ~G~Kt~EiR~nDr~~~vGD~l~l~E 48 (83)
T 3iuw_A 24 ERRKTFEIRKNDRNFQVGDILILEE 48 (83)
T ss_dssp TTSCCEEEEECCSCCCTTCEEEEEE
T ss_pred cCCcEEEEEecccCCCCCCEEEEEE
Confidence 443333 444556799999999863
Done!