BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030251
(180 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|B2IEC1|RUVX_BEII9 Putative Holliday junction resolvase OS=Beijerinckia indica subsp.
indica (strain ATCC 9039 / DSM 1715 / NCIB 8712)
GN=Bind_1895 PE=3 SV=1
Length = 165
Score = 84.0 bits (206), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 77/147 (52%), Gaps = 6/147 (4%)
Query: 18 LKRKVSKRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEF 77
LK + R R +G+D+G K +GLS+SD + +IA+PL + R K T D AE +L +F
Sbjct: 11 LKPLLGPRQRLIGIDLGTKTIGLSLSDVERRIATPLETIRRTKFTKD--AERLLALADQF 68
Query: 78 NLEGFIVGYPFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNP 136
++ F++G P N +A VQ + F+ LS L + YW+E ++ V L
Sbjct: 69 DVAAFVIGLPLNMDGSAGPRVQATEAFVRSLSG---LTSRPFCYWDERLSTAAVTRDLIA 125
Query: 137 LDLHPVEYKTILDKFAAVGILQEYLDN 163
D + ++DK AA ILQ LD
Sbjct: 126 QDASRAKRAAVVDKLAAAFILQGALDR 152
>sp|Q5NPF1|RUVX_ZYMMO Putative Holliday junction resolvase OS=Zymomonas mobilis subsp.
mobilis (strain ATCC 31821 / ZM4 / CP4) GN=ZMO0785 PE=3
SV=2
Length = 163
Score = 79.7 bits (195), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 83/160 (51%), Gaps = 11/160 (6%)
Query: 5 MKYVKPLRLFEQMLKRKVSKRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTID 64
+K + LRLF++ L RK GR GLDVG K +GL++ D + IASP + RKK T+D
Sbjct: 10 LKKQEELRLFQEALPRK----GRLAGLDVGTKTIGLALCDSQWIIASPAETIRRKKFTLD 65
Query: 65 LMAEDFRSLISEFNLEGFIVGYPFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNE 123
L E R + + ++G ++G P N + + Q V+ F +++ + W+E
Sbjct: 66 L--ELLRQFVEKQQVKGLVIGLPLNLDGSDSPRTQSVRAFAKNVAPL----SLPVLMWDE 119
Query: 124 GFTSKGVELLLNPLDLHPVEYKTILDKFAAVGILQEYLDN 163
+++K V L D ++DK AA ILQ +D+
Sbjct: 120 RWSTKAVTRTLLEADASRARRSEVVDKMAAAYILQGAIDS 159
>sp|Q1QL26|RUVX_NITHX Putative Holliday junction resolvase OS=Nitrobacter hamburgensis
(strain X14 / DSM 10229) GN=Nham_2279 PE=3 SV=2
Length = 163
Score = 77.4 bits (189), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 75/140 (53%), Gaps = 6/140 (4%)
Query: 24 KRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFI 83
+RG +GLD+G K +G+++SDP ++A+ + L RK T D A ++ E N GF+
Sbjct: 17 ERGALVGLDLGTKTIGVAVSDPDRRLATGVETLQRKTFTAD--AARLLAIAGERNAAGFV 74
Query: 84 VGYPFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPV 142
+G P N + Q + F +L+ +L D+ W+E ++ VE L +D+
Sbjct: 75 LGLPINMDGSEGPRAQSTRAFARNLA---RLTDLAIGLWDERLSTVAVERELIGMDMSRA 131
Query: 143 EYKTILDKFAAVGILQEYLD 162
+ ++D+ AA+ ILQ LD
Sbjct: 132 KRAKVIDEHAAIFILQGALD 151
>sp|Q3SR28|RUVX_NITWN Putative Holliday junction resolvase OS=Nitrobacter winogradskyi
(strain Nb-255 / ATCC 25391) GN=Nwi_2004 PE=3 SV=1
Length = 163
Score = 76.6 bits (187), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 72/140 (51%), Gaps = 6/140 (4%)
Query: 25 RGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIV 84
RG +GLD+G K +G+++SDP ++A+ + + RK T D A ++ E EGFI+
Sbjct: 18 RGALVGLDLGTKTIGVAVSDPDRRLATGVETIRRKTFTAD--AARLLAIAGERRAEGFIL 75
Query: 85 GYPFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVE 143
G P N + Q + F +L+ +L D W+E ++ VE L LD+
Sbjct: 76 GLPINMDGSEGPRAQSTRAFARNLA---RLTDFAIGLWDERLSTAAVERELIGLDMSRAR 132
Query: 144 YKTILDKFAAVGILQEYLDN 163
++D+ AA+ ILQ LD
Sbjct: 133 RAKVIDEHAAIFILQGALDR 152
>sp|B8EPC5|RUVX_METSB Putative Holliday junction resolvase OS=Methylocella silvestris
(strain BL2 / DSM 15510 / NCIMB 13906) GN=Msil_0742 PE=3
SV=1
Length = 161
Score = 75.1 bits (183), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 76/150 (50%), Gaps = 6/150 (4%)
Query: 18 LKRKVSKRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEF 77
L +V R R +G+D+G K +GL++SD + +IA+PL + R K + D A L +F
Sbjct: 11 LPARVGPRQRLIGIDLGTKTIGLALSDVERRIATPLETIQRIKFSKD--AVRLIELAEKF 68
Query: 78 NLEGFIVGYPFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNP 136
+ I+G P N + VQ + F+ LSA L + YW+E ++ V L
Sbjct: 69 DAGALIIGLPLNMDGSQGPRVQATRAFVRSLSA---LVSKPFVYWDERLSTAAVTRSLID 125
Query: 137 LDLHPVEYKTILDKFAAVGILQEYLDNANR 166
D+ ++ ++DK AA ILQ LD R
Sbjct: 126 QDVSRLKRAEVVDKMAAAYILQGVLDRLRR 155
>sp|A4J2L0|RUVX_DESRM Putative Holliday junction resolvase OS=Desulfotomaculum reducens
(strain MI-1) GN=Dred_0775 PE=3 SV=1
Length = 137
Score = 74.3 bits (181), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 75/140 (53%), Gaps = 4/140 (2%)
Query: 27 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 86
R +GLDVGDK +G+++SDP A L V+ +++TI+ +ISE+++E +VG
Sbjct: 2 RIMGLDVGDKTIGVALSDPLGWTAQGLEVI--RRDTIEKDMNRLAQIISEYSVERILVGM 59
Query: 87 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKT 146
P N N Q + + + K+ D+ W+E ++ E +L D+ + K
Sbjct: 60 PKN--MNGTVGSQGEKVLAFIEKVKEKIDLPIKTWDERLSTVAAEKMLIQADVSRGKRKK 117
Query: 147 ILDKFAAVGILQEYLDNANR 166
++DK AA ILQ YLD+ +
Sbjct: 118 VIDKMAAAVILQGYLDSGAK 137
>sp|Q0AZP9|RUVX_SYNWW Putative Holliday junction resolvase OS=Syntrophomonas wolfei
subsp. wolfei (strain Goettingen) GN=Swol_0470 PE=3 SV=1
Length = 141
Score = 73.9 bits (180), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 70/140 (50%), Gaps = 6/140 (4%)
Query: 27 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 86
R +GLD+G+K +G++ SDP A S+L RK DL + L EF +E ++G
Sbjct: 2 RIMGLDLGEKRIGIAFSDPMGWTAQGHSILQRKGLKKDLSY--LQELCQEFQVEKIVLGL 59
Query: 87 PFNRQQN-AADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 145
P N A++ + F L K+ +W+E +SK E +L DL K
Sbjct: 60 PLNMNGTMGPKALETQEFARALQEALKI---PVDFWDERLSSKSAERVLLEADLSRKRRK 116
Query: 146 TILDKFAAVGILQEYLDNAN 165
++DK AAV ILQ YLD +
Sbjct: 117 ELIDKIAAVHILQAYLDGGS 136
>sp|B0K0Q3|RUVX_THEPX Putative Holliday junction resolvase OS=Thermoanaerobacter sp.
(strain X514) GN=Teth514_1491 PE=3 SV=1
Length = 139
Score = 73.6 bits (179), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 75/143 (52%), Gaps = 7/143 (4%)
Query: 27 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 86
R +GLDVGDK +G++ISD IA L+ + R N D E + +I+E+ + IVG
Sbjct: 2 RIMGLDVGDKTIGIAISDLSGTIAQGLTTIKRSSNKKDF--ERIKQIINEYEVGMIIVGL 59
Query: 87 PFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVE-LLLNPLDLHPVEY 144
P N Q V F++ L K+ ++ W+E T+ E +L+ D+ +
Sbjct: 60 PKNLNGTLGPQGQKVVRFVEHL---KEAINIPIILWDERLTTVEAERVLIEKADISRAKR 116
Query: 145 KTILDKFAAVGILQEYLDNANRK 167
K ++DK AAV ILQ YLD+ K
Sbjct: 117 KEVIDKLAAVLILQNYLDSQKNK 139
>sp|Q2IXC6|RUVX_RHOP2 Putative Holliday junction resolvase OS=Rhodopseudomonas palustris
(strain HaA2) GN=RPB_2429 PE=3 SV=1
Length = 160
Score = 73.6 bits (179), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 74/139 (53%), Gaps = 6/139 (4%)
Query: 25 RGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIV 84
RG LGLD+G K +G+++SDP ++A+ + + RK T D A+ +L + N GF++
Sbjct: 18 RGSLLGLDLGTKTIGVAVSDPDRRLATGIETVARKAFTAD--AQRLLALAAGRNACGFVL 75
Query: 85 GYPFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVE 143
G P N + VQ + F + + +L ++ W+E ++ VE L D+ +
Sbjct: 76 GLPLNMDGSEGPRVQSTRAFARNFA---RLTELPIGLWDERLSTAAVERELIANDVSRAK 132
Query: 144 YKTILDKFAAVGILQEYLD 162
I+D+ AA+ ILQ LD
Sbjct: 133 RAKIIDEHAAIYILQGALD 151
>sp|B6IN25|RUVX_RHOCS Putative Holliday junction resolvase OS=Rhodospirillum centenum
(strain ATCC 51521 / SW) GN=RC1_1518 PE=3 SV=1
Length = 188
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 77/148 (52%), Gaps = 5/148 (3%)
Query: 18 LKRKVSKRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEF 77
LK + + GR +GLD+G+K +GL++SDP +ASP+ + R K T D A++ + +
Sbjct: 9 LKASLPRNGRLMGLDLGEKTIGLAVSDPGLSVASPVGTIRRTKFTQD--AQELARAMRDR 66
Query: 78 NLEGFIVGYPFNRQQNAADAVQ-VKLFIDDLSATKKL--EDMKYAYWNEGFTSKGVELLL 134
++ +VG P N Q V+ F L +L + + A+W+E ++ VE ++
Sbjct: 67 DVRALVVGLPVNMDGTEGPRCQSVREFSRLLLQRPQLFGFEPEIAFWDERLSTSAVERMM 126
Query: 135 NPLDLHPVEYKTILDKFAAVGILQEYLD 162
D+ ++DK AA ILQ LD
Sbjct: 127 IGWDMTRKRRDEVVDKMAAAYILQGALD 154
>sp|B0K996|RUVX_THEP3 Putative Holliday junction resolvase OS=Thermoanaerobacter
pseudethanolicus (strain ATCC 33223 / 39E)
GN=Teth39_1054 PE=3 SV=1
Length = 139
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 74/143 (51%), Gaps = 7/143 (4%)
Query: 27 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 86
R +GLDVGDK +G++ISD IA L+ + R N D E + +I+E+ + IVG
Sbjct: 2 RIMGLDVGDKTIGVAISDLSGTIAQGLTTIKRSSNKKDF--ERIKQIINEYEVGMIIVGL 59
Query: 87 PFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTS-KGVELLLNPLDLHPVEY 144
P N Q V F++ L K+ + W+E T+ + +L+ D+ +
Sbjct: 60 PKNMNGTLGPQGQKVMRFVEHL---KEAFSIPIILWDERLTTVEAQRVLIEKADISRAKR 116
Query: 145 KTILDKFAAVGILQEYLDNANRK 167
K ++DK AAV ILQ YLD+ K
Sbjct: 117 KEVIDKLAAVLILQNYLDSQKNK 139
>sp|Q2W6Y3|RUVX_MAGSA Putative Holliday junction resolvase OS=Magnetospirillum magneticum
(strain AMB-1 / ATCC 700264) GN=amb1588 PE=3 SV=2
Length = 155
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 72/144 (50%), Gaps = 6/144 (4%)
Query: 21 KVSKRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLE 80
+S+ R LGLD+G K +GL++SD IA+P + R K T D AE +++ + +
Sbjct: 12 SLSRDQRLLGLDLGSKTIGLALSDVSRTIATPFDTIRRTKFTQD--AELLLAVVDKQGVG 69
Query: 81 GFIVGYPFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDL 139
G ++G P Q V+ F +L+ +L DM AYW+E ++ V L D
Sbjct: 70 GLVLGLPVEMDGFEGPRCQSVRSFAANLA---RLRDMPIAYWDERLSTSAVTRTLLEADS 126
Query: 140 HPVEYKTILDKFAAVGILQEYLDN 163
++DK AA ILQ LDN
Sbjct: 127 SRKRRAEVVDKMAAAYILQGLLDN 150
>sp|A5UY83|RUVX_ROSS1 Putative Holliday junction resolvase OS=Roseiflexus sp. (strain
RS-1) GN=RoseRS_3225 PE=3 SV=1
Length = 141
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 78/142 (54%), Gaps = 6/142 (4%)
Query: 23 SKRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGF 82
S+ GR + LDVG++ +G+++SDP +ASPL+ + + L + +LI ++ +
Sbjct: 3 SEPGRVMALDVGERRIGVALSDPTRMLASPLTTIRAVPRSTAL--KRILTLIRDYQVTAL 60
Query: 83 IVGYPFNRQQN-AADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHP 141
+VG P + A V+ F+D+L + L D+ + +E T+ E ++ L + P
Sbjct: 61 VVGLPLTMNGDIGPQATLVQQFVDEL---RPLIDIPIFFVDERLTTVAAERMMIDLKIKP 117
Query: 142 VEYKTILDKFAAVGILQEYLDN 163
+ + +D+ AA ILQ++LD+
Sbjct: 118 EQRRARIDEVAASIILQDFLDS 139
>sp|B8GC73|RUVX_CHLAD Putative Holliday junction resolvase OS=Chloroflexus aggregans
(strain MD-66 / DSM 9485) GN=Cagg_0094 PE=3 SV=1
Length = 142
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 74/136 (54%), Gaps = 6/136 (4%)
Query: 28 FLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYP 87
LGLDVG++ +G++ISD + +IA+PL+ + + + L++E + +VG P
Sbjct: 6 ILGLDVGERRIGVAISDVEARIAAPLTTI--PAHPPERAIAQIARLVAERGVRRVVVGLP 63
Query: 88 FN-RQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKT 146
R ++ A ++ F+D L+A + + ++E TS E +L L + P + K
Sbjct: 64 LTMRGEHGPQAAAIQRFVDALAA---VLNCPVEMFDERLTSVAAEQMLRNLGVKPAKIKE 120
Query: 147 ILDKFAAVGILQEYLD 162
+D+ AA ILQ+YLD
Sbjct: 121 QIDQVAASIILQDYLD 136
>sp|A4XKC6|RUVX_CALS8 Putative Holliday junction resolvase OS=Caldicellulosiruptor
saccharolyticus (strain ATCC 43494 / DSM 8903)
GN=Csac_1776 PE=3 SV=1
Length = 138
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 73/143 (51%), Gaps = 11/143 (7%)
Query: 27 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLI----SEFNLEGF 82
R L LD+G + +G++ISDP A P VL DL ED S + +E +E
Sbjct: 2 RILCLDIGSRRIGVAISDPLKIAAQPFCVL-------DLQKEDLYSCLDKIFNEHQIEKI 54
Query: 83 IVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPV 142
++GYP ++ +++ + S ++ + W+E F++K VE +L ++
Sbjct: 55 VIGYPVSKFHPDKATEKLQKIDEICSELERRYKVGIIKWDERFSTKAVERILREENVSWQ 114
Query: 143 EYKTILDKFAAVGILQEYLDNAN 165
+ K ++DK AAV ILQ YLD N
Sbjct: 115 KRKKVVDKLAAVYILQGYLDFIN 137
>sp|Q135J0|RUVX_RHOPS Putative Holliday junction resolvase OS=Rhodopseudomonas palustris
(strain BisB5) GN=RPD_3023 PE=3 SV=1
Length = 160
Score = 71.6 bits (174), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 73/139 (52%), Gaps = 6/139 (4%)
Query: 25 RGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIV 84
RG LGLD+G K +G+++SDP K+A+ + + R T D A+ +L +E + GF++
Sbjct: 18 RGALLGLDLGTKTIGVAVSDPDRKLATGIETVARTAFTAD--AKRVLALAAERSACGFVL 75
Query: 85 GYPFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVE 143
G P N + Q + F + + +L ++ W+E ++ VE L D+ +
Sbjct: 76 GLPLNMDGSEGPRAQSTRAFARNFA---RLTELPIGLWDERLSTAAVERALIANDVSRAK 132
Query: 144 YKTILDKFAAVGILQEYLD 162
I+D+ AA+ ILQ LD
Sbjct: 133 RAKIIDEHAAIYILQGALD 151
>sp|A4YWF9|RUVX_BRASO Putative Holliday junction resolvase OS=Bradyrhizobium sp. (strain
ORS278) GN=BRADO4497 PE=3 SV=1
Length = 161
Score = 70.9 bits (172), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 73/141 (51%), Gaps = 6/141 (4%)
Query: 24 KRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFI 83
+RG +GLD+G K +G+++SDP ++A+ + + RK D A ++ +E + GF+
Sbjct: 17 ERGALVGLDLGTKTIGVAVSDPDRRLATGVETIQRKAFKAD--AARLLAICAERKVVGFV 74
Query: 84 VGYPFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPV 142
+G P N + Q + F +L+ L D+ W+E ++ VE L +D+
Sbjct: 75 LGLPINMDGSEGPRAQSTRAFARNLAG---LTDLPIGLWDERLSTAAVERELIGMDVSRA 131
Query: 143 EYKTILDKFAAVGILQEYLDN 163
+ ++D AA+ ILQ LD
Sbjct: 132 KRAEVIDTHAAIFILQGALDR 152
>sp|A5EKQ4|RUVX_BRASB Putative Holliday junction resolvase OS=Bradyrhizobium sp. (strain
BTAi1 / ATCC BAA-1182) GN=BBta_4721 PE=3 SV=1
Length = 161
Score = 70.5 bits (171), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 72/140 (51%), Gaps = 6/140 (4%)
Query: 24 KRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFI 83
+RG +GLD+G K +G+++SDP ++A+ + + RK D A ++ SE + GF+
Sbjct: 17 ERGALVGLDLGTKTIGVAVSDPDRRLATGVETIQRKAFKAD--AARLLAISSERKVVGFV 74
Query: 84 VGYPFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPV 142
+G P N + Q + F +L+ L D+ W+E ++ VE L +D+
Sbjct: 75 LGLPINMDGSEGPRAQSTRAFARNLA---NLTDLPIGLWDERLSTAAVERELIGMDVSRA 131
Query: 143 EYKTILDKFAAVGILQEYLD 162
++D AA+ ILQ LD
Sbjct: 132 RRAEVIDTHAAIFILQGALD 151
>sp|Q8Y723|RUVX_LISMO Putative Holliday junction resolvase OS=Listeria monocytogenes
serovar 1/2a (strain ATCC BAA-679 / EGD-e) GN=lmo1502
PE=3 SV=1
Length = 138
Score = 70.5 bits (171), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 67/140 (47%), Gaps = 4/140 (2%)
Query: 27 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 86
R +GLDVG K VG++ISDP A + + +N + + L+ E+ +E +VG
Sbjct: 2 RIMGLDVGSKTVGVAISDPLGWTAQGVETIQIDENRKQFGYDRVKELVLEYEVEKVVVGL 61
Query: 87 PFNRQQN-AADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 145
P N A K++ + L A L W+E T+ E L D+ + K
Sbjct: 62 PKNMNNTIGPRAESSKIYAEVLEARIGL---PVVLWDERLTTSAAERTLIEADVSRKKRK 118
Query: 146 TILDKFAAVGILQEYLDNAN 165
++DK AAV ILQ YLD N
Sbjct: 119 EVIDKLAAVMILQSYLDTTN 138
>sp|C4Z578|RUVX_EUBE2 Putative Holliday junction resolvase OS=Eubacterium eligens (strain
ATCC 27750 / VPI C15-48) GN=EUBELI_00774 PE=3 SV=1
Length = 140
Score = 70.5 bits (171), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 72/141 (51%), Gaps = 3/141 (2%)
Query: 27 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNT-IDLMAEDFRSLISEFNLEGFIVG 85
R +GLDVG K VG+++SDP A P + RK+N + +ISE+++ +VG
Sbjct: 2 RIIGLDVGTKTVGVALSDPLGITAQPFETITRKENNKLRRTYARIEQIISEYDVTEIVVG 61
Query: 86 YPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 145
YP N + + K + +A ++ + W+E T+ + +L + K
Sbjct: 62 YPKNMDDTIGE--RAKACEEFAAALERRTGLPVTLWDERLTTVEADEVLEECGMRRENRK 119
Query: 146 TILDKFAAVGILQEYLDNANR 166
T++D+ AAV IL+ Y+++ +
Sbjct: 120 TVIDQLAAVFILRGYMESKQK 140
>sp|Q045P4|RUVX_LACGA Putative Holliday junction resolvase OS=Lactobacillus gasseri
(strain ATCC 33323 / DSM 20243) GN=LGAS_0423 PE=3 SV=1
Length = 143
Score = 70.1 bits (170), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 79/144 (54%), Gaps = 7/144 (4%)
Query: 27 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 86
R LGLDVG K VG++ISDP A L + ++ R L+ ++++EGF++G
Sbjct: 2 RLLGLDVGSKTVGVAISDPLGITAQELETIKIDESKFSFGMRQIRKLVRKYDVEGFVLGL 61
Query: 87 PFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTS-KGVELLLNPLDLHP-VE 143
P N ++ +V+ K + + L K+ D+ Y +E T+ + +L+ +H VE
Sbjct: 62 PKNMDGSSGHSVERSKQYGERL---KEKFDLPVHYMDERLTTVQADRILVQEAGVHDRVE 118
Query: 144 YKTILDKFAAVGILQEYLDNANRK 167
K ++D+ AAV ILQ YL+ A RK
Sbjct: 119 RKKVIDQMAAVLILQSYLE-ATRK 141
>sp|Q8R5S9|RUVX_THETN Putative Holliday junction resolvase OS=Thermoanaerobacter
tengcongensis (strain DSM 15242 / JCM 11007 / NBRC
100824 / MB4) GN=TTE1250 PE=3 SV=1
Length = 139
Score = 70.1 bits (170), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 75/138 (54%), Gaps = 5/138 (3%)
Query: 27 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 86
R LGLDVGDK +G++ISD + IA ++ + RK D+ A ++ ++++E +VG
Sbjct: 2 RVLGLDVGDKTIGVAISDVSSTIAQGITTIRRKSFVEDVKA--IEEIVKKYSVEKVVVGL 59
Query: 87 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVE-LLLNPLDLHPVEYK 145
P N N + Q + I +++ + +W+E T+ E L+ +D+ + K
Sbjct: 60 PKN--MNGSIGPQGEKVIKFGEKLREVLRIPVVFWDERLTTLQAERFLIEGVDMSRGKRK 117
Query: 146 TILDKFAAVGILQEYLDN 163
++DK AA ILQ YLD+
Sbjct: 118 KVIDKLAATIILQSYLDS 135
>sp|Q07L84|RUVX_RHOP5 Putative Holliday junction resolvase OS=Rhodopseudomonas palustris
(strain BisA53) GN=RPE_3368 PE=3 SV=1
Length = 163
Score = 70.1 bits (170), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 72/138 (52%), Gaps = 6/138 (4%)
Query: 26 GRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVG 85
G +GLD+G K +G+++SDP ++A+ + +LRK T D A +L +E G ++G
Sbjct: 19 GALIGLDLGTKTIGVAVSDPARRLATGVETILRKTFTTD--AARLLALATERKAVGLVLG 76
Query: 86 YPFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEY 144
P N + Q + F +L+ +L ++ W+E ++ VE L D+ +
Sbjct: 77 LPINMDASEGPRAQSTRAFARNLA---RLTELPIGLWDERLSTAAVERELIANDVSRAKR 133
Query: 145 KTILDKFAAVGILQEYLD 162
++D+ AA+ ILQ LD
Sbjct: 134 AKVIDEHAAIFILQGALD 151
>sp|B2V3W4|RUVX_CLOBA Putative Holliday junction resolvase OS=Clostridium botulinum
(strain Alaska E43 / Type E3) GN=CLH_1127 PE=3 SV=1
Length = 137
Score = 69.7 bits (169), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 72/140 (51%), Gaps = 4/140 (2%)
Query: 27 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 86
R LGLD+G K +G++ISDP A ++ + R D+ E+ R + E+ +E ++G
Sbjct: 2 RILGLDLGKKTIGVAISDPLGFTAQGITTIRRANKEKDM--EELRKICDEYKVETIVIGL 59
Query: 87 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKT 146
P N + ++ + + L ++ ++K +W+E T+ + DL + K
Sbjct: 60 PKNMNGTIGPSGEIAMEMGKL--VEEALNIKVEFWDERLTTVAAHKAMLEADLSRSKRKK 117
Query: 147 ILDKFAAVGILQEYLDNANR 166
I+DK A+ ILQ YLD ++
Sbjct: 118 IVDKVASTYILQGYLDRISK 137
>sp|B2THN2|RUVX_CLOBB Putative Holliday junction resolvase OS=Clostridium botulinum
(strain Eklund 17B / Type B) GN=CLL_A1176 PE=3 SV=1
Length = 137
Score = 69.3 bits (168), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 72/140 (51%), Gaps = 4/140 (2%)
Query: 27 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 86
R LGLD+G K +G+++SDP A ++ + R D+ E+ R + E+ +E ++G
Sbjct: 2 RILGLDLGKKTIGVAVSDPLGFTAQGITTIRRANKEKDM--EELRKICDEYKVETIVIGL 59
Query: 87 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKT 146
P N + ++ + + L ++ ++K +W+E T+ + DL + K
Sbjct: 60 PKNMNGTIGPSGEIAMEMGKL--VEEALNIKVEFWDERLTTVAAHKAMLEADLSRSKRKK 117
Query: 147 ILDKFAAVGILQEYLDNANR 166
I+DK A+ ILQ YLD ++
Sbjct: 118 IVDKVASTYILQGYLDRISK 137
>sp|Q71ZG8|RUVX_LISMF Putative Holliday junction resolvase OS=Listeria monocytogenes
serotype 4b (strain F2365) GN=LMOf2365_1521 PE=3 SV=1
Length = 138
Score = 68.9 bits (167), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 67/140 (47%), Gaps = 4/140 (2%)
Query: 27 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 86
R +GLDVG K VG++ISDP A + + +N + + L+ E+ +E +VG
Sbjct: 2 RIMGLDVGSKTVGVAISDPLGWTAQGVETIQIDENRKQFGYDRVKELVLEYEVEKVVVGL 61
Query: 87 PFNRQQN-AADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 145
P N A K++ + L + L W+E T+ E L D+ + K
Sbjct: 62 PKNMNNTIGPRAESSKIYAEVLESRIGL---PVVLWDERLTTSAAERTLIEADVSRKKRK 118
Query: 146 TILDKFAAVGILQEYLDNAN 165
++DK AAV ILQ YLD N
Sbjct: 119 EVIDKLAAVMILQSYLDTTN 138
>sp|C1KVE9|RUVX_LISMC Putative Holliday junction resolvase OS=Listeria monocytogenes
serotype 4b (strain CLIP80459) GN=Lm4b_01512 PE=3 SV=1
Length = 138
Score = 68.9 bits (167), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 67/140 (47%), Gaps = 4/140 (2%)
Query: 27 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 86
R +GLDVG K VG++ISDP A + + +N + + L+ E+ +E +VG
Sbjct: 2 RIMGLDVGSKTVGVAISDPLGWTAQGVETIQIDENRKQFGYDRVKELVLEYEVEKVVVGL 61
Query: 87 PFNRQQN-AADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 145
P N A K++ + L + L W+E T+ E L D+ + K
Sbjct: 62 PKNMNNTIGPRAESSKIYAEVLESRIGL---PVVLWDERLTTSAAERTLIEADVSRKKRK 118
Query: 146 TILDKFAAVGILQEYLDNAN 165
++DK AAV ILQ YLD N
Sbjct: 119 EVIDKLAAVMILQSYLDTTN 138
>sp|B0TFZ0|RUVX_HELMI Putative Holliday junction resolvase OS=Heliobacterium
modesticaldum (strain ATCC 51547 / Ice1) GN=Helmi_02370
PE=3 SV=1
Length = 149
Score = 68.9 bits (167), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 68/136 (50%), Gaps = 4/136 (2%)
Query: 27 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 86
R +GLDVGDK +G+++SD A ++ + R + DL E R L+ + +E + G
Sbjct: 2 RIMGLDVGDKTIGVAVSDLMGWTAQGVATIRRSRLAADL--EHLRELVKTYEVERIVCGL 59
Query: 87 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKT 146
P R N + + S +K ++ YW+E T+ + L DL + K
Sbjct: 60 P--RNMNGTYGPRAEGIRKFGSLVEKKLNIPVDYWDERLTTVAAQKTLIAGDLSRAKRKQ 117
Query: 147 ILDKFAAVGILQEYLD 162
++DK AAV ILQ Y+D
Sbjct: 118 VVDKLAAVLILQNYMD 133
>sp|Q2K942|RUVX_RHIEC Putative Holliday junction resolvase OS=Rhizobium etli (strain CFN
42 / ATCC 51251) GN=RHE_CH01852 PE=3 SV=1
Length = 164
Score = 68.9 bits (167), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 68/135 (50%), Gaps = 6/135 (4%)
Query: 30 GLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPFN 89
GLD+G K +GLSISD + A+P V+ R K TID A+ S + GF++G P N
Sbjct: 21 GLDLGTKTIGLSISDLGRRFATPRPVIRRIKFTID--AQALLDFASAEKVAGFVIGLPMN 78
Query: 90 RQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKTIL 148
+A VQ + F+ ++ L + YW+E ++ E +L +D+ + +
Sbjct: 79 MDGSAGPRVQATRAFVRNMEQKTAL---PFIYWDERLSTVAAERVLIEMDVSRAKRAERI 135
Query: 149 DKFAAVGILQEYLDN 163
D AA ILQ LD
Sbjct: 136 DSAAASFILQGALDR 150
>sp|Q74KV1|RUVX_LACJO Putative Holliday junction resolvase OS=Lactobacillus johnsonii
(strain CNCM I-12250 / La1 / NCC 533) GN=LJ_0476 PE=3
SV=1
Length = 143
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 80/146 (54%), Gaps = 7/146 (4%)
Query: 27 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 86
R LGLDVG K VG++ISDP A L + ++ R ++ ++++EGF++G
Sbjct: 2 RLLGLDVGSKTVGVAISDPLGITAQELETIKIDESKFSFGLRQIRRIVRKYDVEGFVLGL 61
Query: 87 PFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTS-KGVELLLNPLDLHP-VE 143
P N ++ +V+ K + + L K+ D+ Y +E T+ + +L+ +H VE
Sbjct: 62 PKNMDGSSGHSVERSKQYGERL---KEKFDLPVYYMDERLTTVQADRILVEEAGVHDRVE 118
Query: 144 YKTILDKFAAVGILQEYLDNANRKVN 169
K ++D+ AAV ILQ YL+ A RK N
Sbjct: 119 RKKVIDQMAAVLILQNYLE-ATRKDN 143
>sp|B1KXB5|RUVX_CLOBM Putative Holliday junction resolvase OS=Clostridium botulinum
(strain Loch Maree / Type A3) GN=CLK_1947 PE=3 SV=1
Length = 137
Score = 68.2 bits (165), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 72/140 (51%), Gaps = 4/140 (2%)
Query: 27 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 86
R LGLD+GD+ +G++ISDP A ++ + RK DL E+ + + ++ ++ + G
Sbjct: 2 RILGLDIGDRTIGIAISDPLGFTAQGITTIRRKSEAYDL--EEIKKICDKYEVDTIVSGL 59
Query: 87 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKT 146
P N N Q + ++ K+ +++ W+E T+ + DL + K
Sbjct: 60 PKN--MNGTLGPQSEKVLEFCDLIKEHLNIEIKMWDERLTTVAATRAMLEADLSRSKRKK 117
Query: 147 ILDKFAAVGILQEYLDNANR 166
I+DK AA ILQ YLD+ ++
Sbjct: 118 IVDKVAATYILQGYLDSLSK 137
>sp|A7GGE9|RUVX_CLOBL Putative Holliday junction resolvase OS=Clostridium botulinum
(strain Langeland / NCTC 10281 / Type F) GN=CLI_2625
PE=3 SV=1
Length = 137
Score = 68.2 bits (165), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 72/140 (51%), Gaps = 4/140 (2%)
Query: 27 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 86
R LGLD+GD+ +G++ISDP A ++ + RK DL E+ + + ++ ++ + G
Sbjct: 2 RILGLDIGDRTIGIAISDPLGFTAQGITTIRRKSEAYDL--EEIKKICDKYEVDTIVSGL 59
Query: 87 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKT 146
P N N Q + ++ K+ +++ W+E T+ + DL + K
Sbjct: 60 PKN--MNGTLGPQSEKVLEFCDLIKEHLNIEIKMWDERLTTVAATRAMLEADLSRSKRKK 117
Query: 147 ILDKFAAVGILQEYLDNANR 166
I+DK AA ILQ YLD+ ++
Sbjct: 118 IVDKVAATYILQGYLDSLSK 137
>sp|B1IJG5|RUVX_CLOBK Putative Holliday junction resolvase OS=Clostridium botulinum
(strain Okra / Type B1) GN=CLD_2003 PE=3 SV=1
Length = 137
Score = 68.2 bits (165), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 72/140 (51%), Gaps = 4/140 (2%)
Query: 27 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 86
R LGLD+GD+ +G++ISDP A ++ + RK DL E+ + + ++ ++ + G
Sbjct: 2 RILGLDIGDRTIGIAISDPLGFTAQGITTIRRKSEAYDL--EEIKKICDKYEVDTIVSGL 59
Query: 87 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKT 146
P N N Q + ++ K+ +++ W+E T+ + DL + K
Sbjct: 60 PKN--MNGTLGPQSEKVLEFCDLIKEHLNIEIKMWDERLTTVAATRAMLEADLSRSKRKK 117
Query: 147 ILDKFAAVGILQEYLDNANR 166
I+DK AA ILQ YLD+ ++
Sbjct: 118 IVDKVAATYILQGYLDSLSK 137
>sp|C1FTB8|RUVX_CLOBJ Putative Holliday junction resolvase OS=Clostridium botulinum
(strain Kyoto / Type A2) GN=CLM_2869 PE=3 SV=1
Length = 137
Score = 68.2 bits (165), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 72/140 (51%), Gaps = 4/140 (2%)
Query: 27 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 86
R LGLD+GD+ +G++ISDP A ++ + RK DL E+ + + ++ ++ + G
Sbjct: 2 RILGLDIGDRTIGIAISDPLGFTAQGITTIRRKSEAYDL--EEIKKICDKYEVDTIVSGL 59
Query: 87 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKT 146
P N N Q + ++ K+ +++ W+E T+ + DL + K
Sbjct: 60 PKN--MNGTLGPQSEKVLEFCDLIKEHLNIEIKMWDERLTTVAATRAMLEADLSRSKRKK 117
Query: 147 ILDKFAAVGILQEYLDNANR 166
I+DK AA ILQ YLD+ ++
Sbjct: 118 IVDKVAATYILQGYLDSLSK 137
>sp|A5I4Z3|RUVX_CLOBH Putative Holliday junction resolvase OS=Clostridium botulinum
(strain Hall / ATCC 3502 / NCTC 13319 / Type A)
GN=CBO2562 PE=3 SV=1
Length = 137
Score = 68.2 bits (165), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 72/140 (51%), Gaps = 4/140 (2%)
Query: 27 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 86
R LGLD+GD+ +G++ISDP A ++ + RK DL E+ + + ++ ++ + G
Sbjct: 2 RILGLDIGDRTIGIAISDPLGFTAQGITTIRRKSEAYDL--EEIKKICDKYEVDTIVSGL 59
Query: 87 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKT 146
P N N Q + ++ K+ +++ W+E T+ + DL + K
Sbjct: 60 PKN--MNGTLGPQSEKVLEFCDLIKEHLNIEIKMWDERLTTVAATRAMLEADLSRSKRKK 117
Query: 147 ILDKFAAVGILQEYLDNANR 166
I+DK AA ILQ YLD+ ++
Sbjct: 118 IVDKVAATYILQGYLDSLSK 137
>sp|C3L148|RUVX_CLOB6 Putative Holliday junction resolvase OS=Clostridium botulinum
(strain 657 / Type Ba4) GN=CLJ_B2792 PE=3 SV=1
Length = 137
Score = 68.2 bits (165), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 72/140 (51%), Gaps = 4/140 (2%)
Query: 27 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 86
R LGLD+GD+ +G++ISDP A ++ + RK DL E+ + + ++ ++ + G
Sbjct: 2 RILGLDIGDRTIGIAISDPLGFTAQGITTIRRKSEAYDL--EEIKKICDKYEVDTIVSGL 59
Query: 87 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKT 146
P N N Q + ++ K+ +++ W+E T+ + DL + K
Sbjct: 60 PKN--MNGTLGPQSEKVLEFCDLIKEHLNIEIKMWDERLTTVAATRAMLEADLSRSKRKK 117
Query: 147 ILDKFAAVGILQEYLDNANR 166
I+DK AA ILQ YLD+ ++
Sbjct: 118 IVDKVAATYILQGYLDSLSK 137
>sp|A7FWJ3|RUVX_CLOB1 Putative Holliday junction resolvase OS=Clostridium botulinum
(strain ATCC 19397 / Type A) GN=CLB_2503 PE=3 SV=1
Length = 137
Score = 68.2 bits (165), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 72/140 (51%), Gaps = 4/140 (2%)
Query: 27 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 86
R LGLD+GD+ +G++ISDP A ++ + RK DL E+ + + ++ ++ + G
Sbjct: 2 RILGLDIGDRTIGIAISDPLGFTAQGITTIRRKSEAYDL--EEIKKICDKYEVDTIVSGL 59
Query: 87 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKT 146
P N N Q + ++ K+ +++ W+E T+ + DL + K
Sbjct: 60 PKN--MNGTLGPQSEKVLEFCDLIKEHLNIEIKMWDERLTTVAATRAMLEADLSRSKRKK 117
Query: 147 ILDKFAAVGILQEYLDNANR 166
I+DK AA ILQ YLD+ ++
Sbjct: 118 IVDKVAATYILQGYLDSLSK 137
>sp|B5ZMI7|RUVX_RHILW Putative Holliday junction resolvase OS=Rhizobium leguminosarum bv.
trifolii (strain WSM2304) GN=Rleg2_1518 PE=3 SV=1
Length = 163
Score = 67.8 bits (164), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 71/147 (48%), Gaps = 6/147 (4%)
Query: 18 LKRKVSKRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEF 77
+ ++ R GLD+G K +GLS+SD + A+P V+ R K TID A+ +
Sbjct: 9 MAETLAPRQAIAGLDLGTKTIGLSMSDLGRRFATPRPVIRRVKFTID--AQALMDFATAE 66
Query: 78 NLEGFIVGYPFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNP 136
+ GF++G P N +A VQ + F+ ++ L + YW+E ++ E L
Sbjct: 67 KVAGFVIGLPMNMDGSAGPRVQATRAFVRNMEQKTAL---PFVYWDERLSTVAAERTLLE 123
Query: 137 LDLHPVEYKTILDKFAAVGILQEYLDN 163
+D+ + +D AA ILQ LD
Sbjct: 124 MDVSRAKRAERIDSAAASFILQGALDR 150
>sp|B9MRK7|RUVX_CALBD Putative Holliday junction resolvase OS=Caldicellulosiruptor bescii
(strain ATCC BAA-1888 / DSM 6725 / Z-1320) GN=Athe_1211
PE=3 SV=1
Length = 138
Score = 67.8 bits (164), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 80/141 (56%), Gaps = 8/141 (5%)
Query: 27 RFLGLDVGDKYVGLSISDPKNKIASP-LSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVG 85
R L LD+G+ VG++ISDP A P +++ LR K+ + E+ + +N+E ++G
Sbjct: 2 RILCLDIGNSRVGVAISDPLKITAQPVMTIELRNKD----LFEELDKIFQGYNIEKVVIG 57
Query: 86 YPFNRQQNAADAVQVKLFIDDLSA-TKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEY 144
YP ++ ++K ID++S +++ W+E F++K VE +++ +L+
Sbjct: 58 YPLSKLHPDQKDEKLKK-IDEISEKIGSRYNVEIVKWDERFSTKAVERVIDE-ELNWKRK 115
Query: 145 KTILDKFAAVGILQEYLDNAN 165
K I+DK AAV ILQ YLD N
Sbjct: 116 KKIIDKVAAVYILQGYLDFYN 136
>sp|B3PXX0|RUVX_RHIE6 Putative Holliday junction resolvase OS=Rhizobium etli (strain CIAT
652) GN=RHECIAT_CH0001940 PE=3 SV=1
Length = 164
Score = 67.8 bits (164), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 68/135 (50%), Gaps = 6/135 (4%)
Query: 30 GLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPFN 89
GLD+G K +GLS+SD + A+P V+ R K TID A+ ++ + GF++G P N
Sbjct: 21 GLDLGTKTIGLSMSDLGRRFATPRPVIRRAKFTID--AQALLDFAAKERVAGFVIGLPMN 78
Query: 90 RQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKTIL 148
+A VQ + F+ ++ L + YW+E ++ E L +D+ + +
Sbjct: 79 MDGSAGPRVQATRAFVRNMEEKTAL---PFVYWDERLSTVAAERTLLEMDVSRAKRAERI 135
Query: 149 DKFAAVGILQEYLDN 163
D AA ILQ LD
Sbjct: 136 DSAAASFILQGALDR 150
>sp|Q92BL1|RUVX_LISIN Putative Holliday junction resolvase OS=Listeria innocua serovar 6a
(strain CLIP 11262) GN=lin1537 PE=3 SV=1
Length = 138
Score = 67.4 bits (163), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 67/140 (47%), Gaps = 4/140 (2%)
Query: 27 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 86
R +GLDVG K VG++ISDP A + + ++ + + L+ E+ +E +VG
Sbjct: 2 RIMGLDVGSKTVGVAISDPLGWTAQGVETIQIDESRKQFGYDRVKELVLEYEVEKVVVGL 61
Query: 87 PFNRQQN-AADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 145
P N A K++ + L + L W+E T+ E L D+ + K
Sbjct: 62 PKNMNNTIGPRAESSKIYAEVLESRIGL---PVVLWDERLTTSAAERTLIEADVSRKKRK 118
Query: 146 TILDKFAAVGILQEYLDNAN 165
++DK AAV ILQ YLD N
Sbjct: 119 EVIDKLAAVMILQSYLDTTN 138
>sp|Q4FLQ5|RUVX_PELUB Putative Holliday junction resolvase OS=Pelagibacter ubique (strain
HTCC1062) GN=SAR11_1079 PE=3 SV=1
Length = 151
Score = 67.0 bits (162), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 79/146 (54%), Gaps = 6/146 (4%)
Query: 18 LKRKVSKRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEF 77
K K + + RF+GLD+G K +G+SI D + IA+P + K NT +L+ E + +I +
Sbjct: 7 FKIKHTNKVRFIGLDLGSKRIGVSICDERQSIATPFKT-INKTNTNELIDE-LKIIIKDN 64
Query: 78 NLEGFIVGYPFNRQQNAADAVQVKLFIDDLSAT-KKLEDMKYAYWNEGFTSKGVELLLNP 136
N+ G IVG P N + + Q ++D+++ K D+ W+E ++ G L +
Sbjct: 65 NIGGIIVGNPVNMDGSLGRSAQ---SVNDVASNISKSIDLPVILWDERLSTVGAFNLSSL 121
Query: 137 LDLHPVEYKTILDKFAAVGILQEYLD 162
LD++ + +D+ AA ILQ +D
Sbjct: 122 LDVNVSKRVKTIDQNAAAFILQGAID 147
>sp|Q52673|RUVX_RHOCB Putative Holliday junction resolvase OS=Rhodobacter capsulatus
(strain ATCC BAA-309 / NBRC 16581 / SB1003) GN=yqgF PE=3
SV=2
Length = 159
Score = 66.6 bits (161), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 69/139 (49%), Gaps = 6/139 (4%)
Query: 26 GRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVG 85
G GLD+G K +G+++SD IA+PL + R+K ++DL D ++E + GF++G
Sbjct: 17 GALAGLDLGTKTIGVAVSDTLRGIATPLRTIRREKFSLDL--ADLMKTVAERQIAGFVLG 74
Query: 86 YPFNRQQNAADAVQ-VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEY 144
P N + Q + F +L +KL + +W+E ++ E + DL
Sbjct: 75 LPVNMDGSEGPRAQSTRAFARNL---EKLTPLPITFWDERLSTVAAERAMLEADLSRKRR 131
Query: 145 KTILDKFAAVGILQEYLDN 163
++D AA ILQ LD
Sbjct: 132 AELVDHVAAGFILQGALDR 150
>sp|Q2LR42|RUVX_SYNAS Putative Holliday junction resolvase OS=Syntrophus aciditrophicus
(strain SB) GN=SYNAS_06690 PE=3 SV=1
Length = 150
Score = 66.6 bits (161), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 74/138 (53%), Gaps = 8/138 (5%)
Query: 27 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRK--KNTIDLMAEDFRSLISEFNLEGFIV 84
R LGLD G+K +G+++ D A L+ ++RK +N + ++A SL+ +++E ++
Sbjct: 2 RILGLDYGEKRIGVALCDELGLTAQALTTVIRKSWRNDVGIIA----SLVRTYDVEKIVI 57
Query: 85 GYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEY 144
GYP + + + +Q + + + + W+E T+K E +L+ + P +
Sbjct: 58 GYPL--RLDGTEGIQCEKVVRFARRLEAALGIPVIRWDETLTTKEAEEILSRSGVPPRKR 115
Query: 145 KTILDKFAAVGILQEYLD 162
+ ++D+ AA ILQ YLD
Sbjct: 116 RGVVDRLAASLILQSYLD 133
>sp|Q0SS44|RUVX_CLOPS Putative Holliday junction resolvase OS=Clostridium perfringens
(strain SM101 / Type A) GN=CPR_1748 PE=3 SV=1
Length = 137
Score = 66.6 bits (161), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 67/140 (47%), Gaps = 4/140 (2%)
Query: 27 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 86
R LGLD+G K +G+++SDP A ++ + R T D+ E + E+ +E + G
Sbjct: 2 RILGLDIGSKTIGVAVSDPLGWTAQGVTTIKRDCYTKDV--EAVMKICKEYGVETIVAGM 59
Query: 87 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKT 146
P N N ++ + +K D K +W+E T+ + DL + K
Sbjct: 60 PKN--MNGTIGPSGEMVKNLCEQIEKSFDGKIEFWDERLTTVAAHRAMLEADLSRAKRKK 117
Query: 147 ILDKFAAVGILQEYLDNANR 166
I+DK AA ILQ YLD ++
Sbjct: 118 IVDKIAATYILQGYLDRISK 137
>sp|Q8XJH8|RUVX_CLOPE Putative Holliday junction resolvase OS=Clostridium perfringens
(strain 13 / Type A) GN=CPE1778 PE=3 SV=1
Length = 137
Score = 66.6 bits (161), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 67/140 (47%), Gaps = 4/140 (2%)
Query: 27 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 86
R LGLD+G K +G+++SDP A ++ + R T D+ E + E+ +E + G
Sbjct: 2 RILGLDIGSKTIGVAVSDPLGWTAQGVTTIKRDCYTKDV--EAVMKICKEYGVETIVAGM 59
Query: 87 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKT 146
P N N ++ + +K D K +W+E T+ + DL + K
Sbjct: 60 PKN--MNGTIGPSGEMVKNLCEQIEKSFDGKIEFWDERLTTVAAHRAMLEADLSRAKRKK 117
Query: 147 ILDKFAAVGILQEYLDNANR 166
I+DK AA ILQ YLD ++
Sbjct: 118 IVDKIAATYILQGYLDRISK 137
>sp|Q0TPH6|RUVX_CLOP1 Putative Holliday junction resolvase OS=Clostridium perfringens
(strain ATCC 13124 / NCTC 8237 / Type A) GN=CPF_2031
PE=3 SV=1
Length = 137
Score = 66.6 bits (161), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 67/140 (47%), Gaps = 4/140 (2%)
Query: 27 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 86
R LGLD+G K +G+++SDP A ++ + R T D+ E + E+ +E + G
Sbjct: 2 RILGLDIGSKTIGVAVSDPLGWTAQGVTTIKRDCYTKDV--EAVMKICKEYGVETIVAGM 59
Query: 87 PFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKT 146
P N N ++ + +K D K +W+E T+ + DL + K
Sbjct: 60 PKN--MNGTIGPSGEMVKNLCEQIEKSFDGKIEFWDERLTTVAAHRAMLEADLSRAKRKK 117
Query: 147 ILDKFAAVGILQEYLDNANR 166
I+DK AA ILQ YLD ++
Sbjct: 118 IVDKIAATYILQGYLDRISK 137
>sp|B9LH40|RUVX_CHLSY Putative Holliday junction resolvase OS=Chloroflexus aurantiacus
(strain ATCC 29364 / DSM 637 / Y-400-fl) GN=Chy400_4158
PE=3 SV=1
Length = 153
Score = 66.6 bits (161), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 71/148 (47%), Gaps = 10/148 (6%)
Query: 28 FLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYP 87
L LDVG++ +G++ISD +IA+PL+ + + + L+ E + +VG P
Sbjct: 6 ILALDVGERRIGVAISDADARIAAPLTTI--NAHPPERAIAQIVRLVQERGVSRVVVGLP 63
Query: 88 FN-RQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKT 146
R + A V+ F D LS+ ++E TS E +L L L P + K
Sbjct: 64 LTMRGERGPQAEVVQRFADTLSSALSC---PVEMFDERLTSVAAEQMLRNLGLKPAKIKA 120
Query: 147 ILDKFAAVGILQEYLD----NANRKVNL 170
+D+ AA ILQ+YLD N NR L
Sbjct: 121 QIDQVAASIILQDYLDARRSNPNRSHEL 148
>sp|A9WCR4|RUVX_CHLAA Putative Holliday junction resolvase OS=Chloroflexus aurantiacus
(strain ATCC 29366 / DSM 635 / J-10-fl) GN=Caur_3849
PE=3 SV=1
Length = 153
Score = 66.6 bits (161), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 71/148 (47%), Gaps = 10/148 (6%)
Query: 28 FLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYP 87
L LDVG++ +G++ISD +IA+PL+ + + + L+ E + +VG P
Sbjct: 6 ILALDVGERRIGVAISDADARIAAPLTTI--NAHPPERAIAQIVRLVQERGVSRVVVGLP 63
Query: 88 FN-RQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKT 146
R + A V+ F D LS+ ++E TS E +L L L P + K
Sbjct: 64 LTMRGERGPQAEVVQRFADTLSSALSC---PVEMFDERLTSVAAEQMLRNLGLKPAKIKA 120
Query: 147 ILDKFAAVGILQEYLD----NANRKVNL 170
+D+ AA ILQ+YLD N NR L
Sbjct: 121 QIDQVAASIILQDYLDARRSNPNRSHEL 148
>sp|A3DBR5|RUVX_CLOTH Putative Holliday junction resolvase OS=Clostridium thermocellum
(strain ATCC 27405 / DSM 1237) GN=Cthe_0153 PE=3 SV=1
Length = 141
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 74/141 (52%), Gaps = 4/141 (2%)
Query: 27 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGY 86
R LG+D GD +G++ISDP A L + + + +++ + L+ E+ ++ IVG+
Sbjct: 2 RVLGIDYGDSRIGIAISDPLGWTAQALETITWRSD-VEVPLKRISELVEEYGVKTVIVGF 60
Query: 87 PFNRQQN-AADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK 145
P N A + FID L ++++D++ W+E T+ + + + + K
Sbjct: 61 PKNMDGTVGARGEKTIEFIDLLQ--QRIKDIEVIKWDERLTTVAANRTMYEMGIKKSKKK 118
Query: 146 TILDKFAAVGILQEYLDNANR 166
++D+ AAV ILQ YLD+ +
Sbjct: 119 LVVDQIAAVYILQGYLDSKGK 139
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.139 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,848,481
Number of Sequences: 539616
Number of extensions: 2555991
Number of successful extensions: 7219
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 276
Number of HSP's successfully gapped in prelim test: 158
Number of HSP's that attempted gapping in prelim test: 6594
Number of HSP's gapped (non-prelim): 435
length of query: 180
length of database: 191,569,459
effective HSP length: 110
effective length of query: 70
effective length of database: 132,211,699
effective search space: 9254818930
effective search space used: 9254818930
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)