Query 030251
Match_columns 180
No_of_seqs 152 out of 1047
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 17:34:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030251.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030251hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nu0_A Hypothetical protein YQ 100.0 1.3E-45 4.4E-50 286.1 9.5 134 25-163 2-136 (138)
2 1vhx_A Putative holliday junct 100.0 4.2E-41 1.4E-45 263.7 8.7 139 26-167 3-142 (150)
3 1iv0_A Hypothetical protein; r 100.0 1.9E-33 6.6E-38 206.2 8.7 97 26-128 1-98 (98)
4 4ep4_A Crossover junction endo 98.6 4.7E-07 1.6E-11 71.6 10.9 102 26-134 1-114 (166)
5 1hjr_A Holliday junction resol 98.1 4E-05 1.4E-09 59.8 12.2 93 26-121 1-101 (158)
6 3bzc_A TEX; helix-turn-helix, 97.8 0.00017 5.8E-09 68.8 11.7 99 25-130 328-428 (785)
7 3psf_A Transcription elongatio 97.3 0.0016 5.3E-08 63.9 11.7 95 26-126 519-625 (1030)
8 3psi_A Transcription elongatio 97.1 0.004 1.4E-07 61.9 11.7 95 26-126 516-622 (1219)
9 3vov_A Glucokinase, hexokinase 96.0 0.021 7.1E-07 47.6 7.6 103 26-134 1-118 (302)
10 2gup_A ROK family protein; sug 95.1 0.066 2.3E-06 43.8 7.6 100 26-132 4-112 (292)
11 2ch5_A NAGK protein; transfera 94.8 0.14 4.8E-06 42.7 9.1 95 27-130 7-117 (347)
12 2e2o_A Hexokinase; acetate and 94.5 0.26 8.8E-06 40.3 9.8 97 26-132 2-104 (299)
13 3djc_A Type III pantothenate k 94.4 0.35 1.2E-05 40.2 10.3 58 26-85 2-64 (266)
14 3epq_A Putative fructokinase; 94.2 0.16 5.6E-06 42.3 8.0 102 26-134 3-117 (302)
15 3vgl_A Glucokinase; ROK family 94.1 0.17 5.9E-06 42.2 8.0 104 26-134 2-116 (321)
16 3r6m_A YEAZ, resuscitation pro 94.1 0.76 2.6E-05 37.0 11.5 92 26-131 2-99 (213)
17 1saz_A Probable butyrate kinas 93.8 0.35 1.2E-05 41.6 9.6 93 26-125 2-131 (381)
18 3mcp_A Glucokinase; structural 93.8 0.31 1.1E-05 42.1 9.2 108 23-134 6-128 (366)
19 4htl_A Beta-glucoside kinase; 93.6 0.29 9.9E-06 40.4 8.4 104 26-134 4-117 (297)
20 2gel_A Putative GRAM negative 92.7 2.8 9.5E-05 33.7 12.8 86 27-122 2-93 (231)
21 2aa4_A Mannac kinase, putative 92.7 0.39 1.3E-05 39.0 7.8 104 27-134 2-116 (289)
22 3lm2_A Putative kinase; struct 92.5 0.27 9.1E-06 39.8 6.4 61 24-89 4-65 (226)
23 2ap1_A Putative regulator prot 92.4 0.5 1.7E-05 39.2 8.1 104 25-133 23-139 (327)
24 2qm1_A Glucokinase; alpha-beta 92.3 0.33 1.1E-05 40.0 6.9 105 26-134 6-128 (326)
25 2hoe_A N-acetylglucosamine kin 92.3 0.49 1.7E-05 40.4 8.2 106 24-134 85-208 (380)
26 4db3_A Glcnac kinase, N-acetyl 92.3 0.67 2.3E-05 38.8 8.8 104 26-134 24-140 (327)
27 2a6a_A Hypothetical protein TM 92.2 2.3 7.8E-05 34.1 11.6 94 26-133 12-111 (218)
28 1z6r_A MLC protein; transcript 91.7 0.46 1.6E-05 40.8 7.3 106 23-134 82-206 (406)
29 3r8e_A Hypothetical sugar kina 91.6 0.3 1E-05 40.7 5.9 107 24-134 17-138 (321)
30 1woq_A Inorganic polyphosphate 91.5 0.79 2.7E-05 37.0 8.2 107 24-134 10-134 (267)
31 1z05_A Transcriptional regulat 90.9 0.52 1.8E-05 40.9 6.9 107 23-134 105-228 (429)
32 3htv_A D-allose kinase, alloki 90.5 0.24 8.1E-06 41.4 4.2 99 24-126 5-119 (310)
33 2ivn_A O-sialoglycoprotein end 90.5 2.3 7.9E-05 35.7 10.4 93 26-124 1-108 (330)
34 1zc6_A Probable N-acetylglucos 90.1 1.8 6.3E-05 35.4 9.3 91 27-130 12-117 (305)
35 3eno_A Putative O-sialoglycopr 89.8 1.8 6.3E-05 36.6 9.3 93 23-122 3-111 (334)
36 1sz2_A Glucokinase, glucose ki 89.6 1 3.5E-05 37.5 7.5 100 24-133 12-121 (332)
37 2q2r_A Glucokinase 1, putative 89.4 0.66 2.3E-05 39.4 6.2 101 25-130 28-144 (373)
38 2ych_A Competence protein PILM 87.3 2.4 8.2E-05 35.5 8.3 64 25-88 12-85 (377)
39 2yhw_A Bifunctional UDP-N-acet 87.3 1.4 4.6E-05 36.8 6.7 105 24-134 28-151 (343)
40 3en9_A Glycoprotease, O-sialog 87.1 3.6 0.00012 36.8 9.8 99 23-132 3-116 (540)
41 1zbs_A Hypothetical protein PG 86.9 1.1 3.8E-05 36.6 5.9 93 28-130 2-104 (291)
42 4ehu_A Activator of 2-hydroxyi 85.1 2.5 8.5E-05 33.9 7.1 50 26-77 1-50 (276)
43 3h1q_A Ethanolamine utilizatio 83.3 11 0.00036 29.8 10.0 87 3-89 2-102 (272)
44 3bex_A Type III pantothenate k 82.1 4.5 0.00015 32.9 7.4 58 26-85 3-63 (249)
45 3i8b_A Xylulose kinase; strain 82.0 4.6 0.00016 36.1 8.1 61 24-85 3-71 (515)
46 3ll3_A Gluconate kinase; xylul 81.2 3.1 0.00011 36.9 6.7 52 25-76 3-62 (504)
47 2h3g_X Biosynthetic protein; p 80.6 5.6 0.00019 32.7 7.6 57 27-85 1-63 (268)
48 3ifr_A Carbohydrate kinase, FG 79.3 4.9 0.00017 35.7 7.2 64 24-87 5-85 (508)
49 1zxo_A Conserved hypothetical 78.8 0.58 2E-05 38.4 0.9 91 28-128 2-100 (291)
50 2p3r_A Glycerol kinase; glycer 78.5 5.7 0.00019 35.3 7.4 63 25-87 2-81 (510)
51 2dpn_A Glycerol kinase; thermu 78.0 6.7 0.00023 34.5 7.7 62 26-87 2-80 (495)
52 3g25_A Glycerol kinase; IDP007 76.3 6.8 0.00023 34.6 7.2 61 26-86 6-83 (501)
53 3h6e_A Carbohydrate kinase, FG 75.7 8.4 0.00029 34.2 7.7 61 26-86 6-76 (482)
54 3l0q_A Xylulose kinase; xlylul 75.6 5.7 0.00019 35.6 6.6 52 24-75 3-62 (554)
55 1dkg_D Molecular chaperone DNA 75.4 1.3 4.5E-05 37.2 2.2 21 26-46 2-22 (383)
56 1yuw_A Heat shock cognate 71 k 75.0 1.8 6E-05 39.1 3.1 23 24-46 2-24 (554)
57 1hux_A Activator of (R)-2-hydr 74.3 13 0.00045 30.0 8.1 25 26-50 3-27 (270)
58 2zf5_O Glycerol kinase; hypert 72.4 10 0.00034 33.4 7.3 62 26-87 3-81 (497)
59 3hz6_A Xylulokinase; xylulose, 72.2 8 0.00027 34.3 6.7 52 25-76 4-63 (511)
60 3h3n_X Glycerol kinase; ATP-bi 71.2 9.3 0.00032 33.8 6.9 62 25-86 4-82 (506)
61 2w40_A Glycerol kinase, putati 71.0 8.5 0.00029 33.9 6.6 62 26-87 4-84 (503)
62 3kht_A Response regulator; PSI 71.0 18 0.00062 24.9 7.2 88 68-163 41-132 (144)
63 3qfu_A 78 kDa glucose-regulate 70.4 2.9 9.8E-05 35.0 3.2 22 25-46 17-38 (394)
64 4e1j_A Glycerol kinase; struct 69.4 12 0.00042 33.2 7.3 62 26-87 26-104 (520)
65 2d4w_A Glycerol kinase; alpha 68.9 13 0.00045 32.7 7.3 62 26-87 2-80 (504)
66 2itm_A Xylulose kinase, xylulo 68.6 17 0.00058 31.8 7.9 61 28-88 2-77 (484)
67 4b9q_A Chaperone protein DNAK; 68.6 3.6 0.00012 37.4 3.7 21 25-45 1-21 (605)
68 3i33_A Heat shock-related 70 k 68.4 3 0.0001 35.3 2.9 23 24-46 21-43 (404)
69 2f9w_A Pantothenate kinase; CO 67.8 11 0.00037 31.2 6.1 20 25-44 22-41 (271)
70 2uyt_A Rhamnulokinase; rhamnos 66.8 10 0.00035 33.1 6.1 63 24-86 2-81 (489)
71 4a2a_A Cell division protein F 66.3 15 0.00053 31.8 7.1 64 25-88 7-85 (419)
72 3ezw_A Glycerol kinase; glycer 65.4 13 0.00046 32.9 6.7 51 25-75 3-61 (526)
73 4gni_A Putative heat shock pro 65.1 4 0.00014 34.6 3.1 19 25-43 12-30 (409)
74 2kho_A Heat shock protein 70; 63.5 3.8 0.00013 37.3 2.8 21 26-46 2-22 (605)
75 2v7y_A Chaperone protein DNAK; 62.7 5 0.00017 35.5 3.3 21 26-46 2-22 (509)
76 3d2f_A Heat shock protein homo 59.3 5.3 0.00018 37.1 2.9 22 25-46 1-22 (675)
77 1jmv_A USPA, universal stress 59.0 33 0.0011 23.6 6.6 48 67-123 91-138 (141)
78 1kcf_A Hypothetical 30.2 KD pr 58.9 26 0.00088 28.8 6.8 64 26-91 40-124 (258)
79 3jvp_A Ribulokinase; PSI-II, N 57.4 14 0.00049 33.1 5.4 26 24-49 3-29 (572)
80 3qze_A DHDPS, dihydrodipicolin 54.5 51 0.0018 27.4 8.1 95 29-135 9-112 (314)
81 3lyh_A Cobalamin (vitamin B12) 53.0 36 0.0012 23.9 6.1 55 80-140 7-63 (126)
82 2gkg_A Response regulator homo 51.8 47 0.0016 21.6 7.4 64 68-139 39-102 (127)
83 3cpe_A Terminase, DNA packagin 51.2 46 0.0016 29.9 7.7 61 25-85 419-483 (592)
84 2bdq_A Copper homeostasis prot 50.5 45 0.0015 26.9 6.8 59 73-140 84-148 (224)
85 2yhx_A Hexokinase B; transfera 50.1 14 0.00049 32.7 4.1 27 23-49 58-84 (457)
86 1bdg_A Hexokinase; phosphotran 49.6 23 0.00079 31.2 5.4 24 24-47 66-89 (451)
87 4e7p_A Response regulator; DNA 49.2 57 0.002 22.4 6.6 63 67-139 55-117 (150)
88 1twd_A Copper homeostasis prot 48.3 35 0.0012 28.1 5.9 59 73-140 81-143 (256)
89 3hdg_A Uncharacterized protein 48.2 59 0.002 21.8 8.6 90 68-168 41-130 (137)
90 3gi1_A LBP, laminin-binding pr 48.1 31 0.0011 28.2 5.7 43 94-140 211-253 (286)
91 3hv2_A Response regulator/HD d 47.3 67 0.0023 22.1 9.7 86 68-163 48-133 (153)
92 2qxy_A Response regulator; reg 46.4 54 0.0019 22.1 6.0 58 68-135 38-95 (142)
93 2l69_A Rossmann 2X3 fold prote 45.7 49 0.0017 23.6 5.6 50 65-124 37-86 (134)
94 3cz5_A Two-component response 45.2 72 0.0025 21.9 7.5 59 68-135 41-99 (153)
95 3eul_A Possible nitrate/nitrit 44.8 73 0.0025 21.8 7.1 63 68-140 51-113 (152)
96 2prs_A High-affinity zinc upta 44.8 42 0.0014 27.2 5.9 44 93-140 205-248 (284)
97 1toa_A Tromp-1, protein (perip 44.6 45 0.0015 27.7 6.1 44 93-140 228-276 (313)
98 1tq8_A Hypothetical protein RV 42.6 42 0.0015 24.2 5.2 50 67-123 108-158 (163)
99 3f6c_A Positive transcription 42.5 38 0.0013 22.6 4.6 55 71-134 39-93 (134)
100 2gm3_A Unknown protein; AT3G01 42.3 47 0.0016 23.9 5.3 52 67-124 113-164 (175)
101 3thx_A DNA mismatch repair pro 42.3 2.4E+02 0.0083 27.1 11.6 126 25-167 144-283 (934)
102 3cet_A Conserved archaeal prot 41.8 59 0.002 27.8 6.5 96 27-132 1-104 (334)
103 3n53_A Response regulator rece 41.6 63 0.0021 21.8 5.7 56 68-130 36-91 (140)
104 1jce_A ROD shape-determining p 41.1 14 0.00046 30.4 2.4 19 26-44 3-21 (344)
105 3grc_A Sensor protein, kinase; 40.9 80 0.0027 21.2 8.4 90 68-165 40-129 (140)
106 3eod_A Protein HNR; response r 40.4 78 0.0027 20.9 7.2 59 68-135 41-99 (130)
107 3gt7_A Sensor protein; structu 40.3 90 0.0031 21.6 7.3 88 68-164 41-128 (154)
108 3cx3_A Lipoprotein; zinc-bindi 39.8 57 0.002 26.4 6.0 43 94-140 209-251 (284)
109 3b2n_A Uncharacterized protein 39.4 84 0.0029 21.0 6.9 59 68-135 39-97 (133)
110 2o1e_A YCDH; alpha-beta protei 38.5 43 0.0015 27.7 5.1 44 93-140 221-264 (312)
111 3gl9_A Response regulator; bet 38.3 85 0.0029 20.7 6.6 61 68-135 36-96 (122)
112 1t6c_A Exopolyphosphatase; alp 38.1 81 0.0028 26.1 6.8 89 25-122 11-118 (315)
113 1mjh_A Protein (ATP-binding do 37.9 32 0.0011 24.3 3.8 47 67-123 109-159 (162)
114 1b5f_B Protein (cardosin A); h 37.6 27 0.00092 23.0 3.0 17 27-43 70-86 (87)
115 2qsj_A DNA-binding response re 37.4 97 0.0033 21.2 7.2 84 68-162 39-123 (154)
116 3cnb_A DNA-binding response re 37.2 91 0.0031 20.8 7.6 87 68-163 44-130 (143)
117 3tnj_A Universal stress protei 36.8 35 0.0012 23.8 3.7 49 67-122 98-146 (150)
118 3u7r_A NADPH-dependent FMN red 36.7 71 0.0024 24.5 5.8 51 67-122 58-111 (190)
119 3kki_A CAI-1 autoinducer synth 36.6 92 0.0031 25.5 6.9 52 67-127 175-227 (409)
120 4h08_A Putative hydrolase; GDS 36.4 1.2E+02 0.004 22.1 6.9 55 65-121 61-117 (200)
121 3jte_A Response regulator rece 36.4 96 0.0033 20.8 6.9 58 69-135 38-97 (143)
122 2rjn_A Response regulator rece 36.3 1E+02 0.0035 21.1 9.4 63 68-139 41-103 (154)
123 3gv0_A Transcriptional regulat 36.1 1.4E+02 0.0048 23.0 7.6 83 68-164 56-153 (288)
124 1xvl_A Mn transporter, MNTC pr 35.9 66 0.0023 26.8 5.9 44 93-140 235-278 (321)
125 3hzh_A Chemotaxis response reg 35.7 1.1E+02 0.0037 21.2 6.3 59 68-135 71-131 (157)
126 3ujp_A Mn transporter subunit; 35.5 73 0.0025 26.4 6.0 43 94-140 222-264 (307)
127 3l6u_A ABC-type sugar transpor 35.1 1.5E+02 0.0051 22.6 8.3 46 68-126 55-100 (293)
128 2ekc_A AQ_1548, tryptophan syn 35.0 1.4E+02 0.0048 23.8 7.5 53 67-121 33-100 (262)
129 4bc3_A Xylulose kinase; transf 33.9 33 0.0011 30.5 3.8 27 23-49 7-33 (538)
130 3h75_A Periplasmic sugar-bindi 33.8 1.3E+02 0.0045 23.9 7.3 48 67-127 50-98 (350)
131 1qkk_A DCTD, C4-dicarboxylate 33.7 98 0.0034 21.2 5.8 59 68-135 37-95 (155)
132 2ews_A Pantothenate kinase; PA 33.2 1.2E+02 0.0041 25.0 7.0 51 25-84 19-69 (287)
133 3k4h_A Putative transcriptiona 32.3 1.7E+02 0.0057 22.3 7.5 43 68-124 59-101 (292)
134 3g0t_A Putative aminotransfera 32.1 1.3E+02 0.0044 24.7 7.1 54 67-126 171-225 (437)
135 3fg9_A Protein of universal st 32.1 22 0.00075 25.2 2.0 21 67-87 107-128 (156)
136 3nkl_A UDP-D-quinovosamine 4-d 31.9 71 0.0024 22.2 4.8 46 68-123 55-100 (141)
137 3k1y_A Oxidoreductase; structu 31.6 70 0.0024 24.5 5.0 49 67-121 76-124 (191)
138 3t6k_A Response regulator rece 31.2 1.2E+02 0.0041 20.4 6.4 61 68-135 38-98 (136)
139 3l8a_A METC, putative aminotra 31.0 90 0.0031 25.8 5.9 54 67-126 183-237 (421)
140 2xws_A Sirohydrochlorin cobalt 31.0 1.1E+02 0.0037 21.3 5.6 49 80-134 5-58 (133)
141 3fdx_A Putative filament prote 30.8 41 0.0014 23.1 3.3 21 67-87 95-115 (143)
142 1d2f_A MALY protein; aminotran 30.7 74 0.0025 25.8 5.3 54 67-126 151-205 (390)
143 3cu5_A Two component transcrip 30.6 99 0.0034 21.0 5.3 50 68-126 39-88 (141)
144 3hh8_A Metal ABC transporter s 30.5 76 0.0026 25.9 5.3 43 94-140 215-257 (294)
145 2ioy_A Periplasmic sugar-bindi 30.4 1.4E+02 0.0048 22.9 6.7 43 68-123 48-90 (283)
146 3mfq_A TROA, high-affinity zin 29.9 1E+02 0.0034 25.0 5.9 37 94-134 195-231 (282)
147 3qk7_A Transcriptional regulat 29.8 1E+02 0.0034 24.0 5.8 18 68-85 55-72 (294)
148 2z08_A Universal stress protei 29.8 44 0.0015 22.9 3.3 22 67-88 88-109 (137)
149 2zay_A Response regulator rece 29.6 1.3E+02 0.0044 20.2 7.8 61 68-135 42-102 (147)
150 1cza_N Hexokinase type I; stru 29.4 54 0.0019 31.5 4.7 25 24-48 76-100 (917)
151 1o13_A Probable NIFB protein; 29.0 1.1E+02 0.0038 22.0 5.5 54 69-139 67-120 (136)
152 5nul_A Flavodoxin; electron tr 28.9 41 0.0014 23.4 3.0 9 101-109 97-105 (138)
153 3ksm_A ABC-type sugar transpor 28.8 1.6E+02 0.0054 22.2 6.6 46 67-124 48-93 (276)
154 2wfb_A Putative uncharacterize 28.8 1.1E+02 0.0039 21.0 5.4 55 69-139 58-112 (120)
155 3m9w_A D-xylose-binding peripl 28.3 2.1E+02 0.0071 22.2 8.6 41 72-124 52-92 (313)
156 2qr3_A Two-component system re 28.3 1.3E+02 0.0045 19.9 6.6 59 68-134 37-99 (140)
157 3kax_A Aminotransferase, class 28.2 1.3E+02 0.0046 23.9 6.4 53 67-126 146-199 (383)
158 3dzz_A Putative pyridoxal 5'-p 28.0 1.1E+02 0.0038 24.4 5.9 54 67-126 149-203 (391)
159 2yx6_A Hypothetical protein PH 27.7 1.4E+02 0.0048 20.6 5.7 54 69-139 54-107 (121)
160 3sim_A Protein, family 18 chit 27.6 1.2E+02 0.0041 24.3 6.0 55 67-124 200-256 (275)
161 1i3c_A Response regulator RCP1 27.2 1.5E+02 0.0051 20.2 7.3 52 77-135 60-111 (149)
162 3nra_A Aspartate aminotransfer 27.1 1.6E+02 0.0055 23.6 6.8 54 67-127 169-223 (407)
163 1tmy_A CHEY protein, TMY; chem 27.0 1.3E+02 0.0044 19.4 6.7 58 68-134 37-94 (120)
164 4dad_A Putative pilus assembly 27.0 1E+02 0.0036 20.8 4.9 59 68-135 56-115 (146)
165 1f07_A Coenzyme F420-dependent 26.9 1.1E+02 0.0036 24.8 5.6 39 63-107 279-318 (321)
166 2xwp_A Sirohydrochlorin cobalt 26.8 1.2E+02 0.004 24.2 5.7 55 80-140 4-75 (264)
167 3euc_A Histidinol-phosphate am 26.7 1.5E+02 0.0052 23.5 6.5 56 67-126 146-202 (367)
168 3jy6_A Transcriptional regulat 26.7 1.6E+02 0.0055 22.4 6.4 43 68-125 53-95 (276)
169 3o74_A Fructose transport syst 26.7 2E+02 0.0069 21.5 7.9 43 69-125 49-92 (272)
170 3hcw_A Maltose operon transcri 26.6 2.2E+02 0.0075 21.9 7.8 43 68-124 58-100 (295)
171 1ivn_A Thioesterase I; hydrola 26.6 1.8E+02 0.006 20.8 7.2 52 66-121 50-105 (190)
172 3o8m_A Hexokinase; rnaseh-like 26.5 46 0.0016 29.8 3.4 25 24-48 78-102 (485)
173 3piu_A 1-aminocyclopropane-1-c 26.4 1.3E+02 0.0046 24.7 6.2 55 67-127 175-235 (435)
174 2zyj_A Alpha-aminodipate amino 26.1 1.2E+02 0.0039 24.7 5.7 55 67-127 151-207 (397)
175 2dum_A Hypothetical protein PH 26.1 53 0.0018 23.4 3.3 54 67-126 106-159 (170)
176 3tb6_A Arabinose metabolism tr 26.1 2.2E+02 0.0074 21.6 9.5 45 70-125 63-109 (298)
177 3r6w_A FMN-dependent NADH-azor 26.0 81 0.0028 23.9 4.4 36 70-108 78-114 (212)
178 2yvt_A Hypothetical protein AQ 26.0 1.8E+02 0.006 22.0 6.5 19 67-85 21-39 (260)
179 3oby_A Protein pelota homolog; 26.0 1.3E+02 0.0045 25.5 6.1 141 14-166 119-262 (352)
180 2dr3_A UPF0273 protein PH0284; 25.9 2E+02 0.007 21.3 7.6 59 64-126 114-174 (247)
181 3hgm_A Universal stress protei 25.8 50 0.0017 22.7 3.0 22 67-88 99-120 (147)
182 1pq4_A Periplasmic binding pro 25.3 85 0.0029 25.6 4.7 43 93-139 219-261 (291)
183 3f9t_A TDC, L-tyrosine decarbo 25.2 2E+02 0.0068 22.7 6.9 51 67-126 160-211 (397)
184 1eo1_A Hypothetical protein MT 25.1 1.7E+02 0.0059 20.2 6.6 52 69-137 56-107 (124)
185 3dlo_A Universal stress protei 25.1 57 0.002 23.3 3.3 21 67-87 106-126 (155)
186 3iwp_A Copper homeostasis prot 25.0 2.3E+02 0.0077 23.6 7.2 60 71-139 117-180 (287)
187 3r0j_A Possible two component 24.9 2.2E+02 0.0076 21.4 7.7 59 68-135 57-115 (250)
188 2fz5_A Flavodoxin; alpha/beta 24.9 1.3E+02 0.0046 20.3 5.1 40 78-120 46-85 (137)
189 1q77_A Hypothetical protein AQ 24.9 45 0.0015 22.8 2.5 19 67-85 98-116 (138)
190 3fdb_A Beta C-S lyase, putativ 24.9 1.9E+02 0.0064 22.9 6.7 54 67-127 140-194 (377)
191 3olq_A Universal stress protei 24.8 1.9E+02 0.0065 22.6 6.7 50 67-122 255-304 (319)
192 3a2b_A Serine palmitoyltransfe 24.8 1.5E+02 0.0053 23.8 6.2 51 67-126 159-213 (398)
193 1c7n_A Cystalysin; transferase 24.6 1.4E+02 0.0046 24.2 5.8 54 67-126 153-207 (399)
194 2xvy_A Chelatase, putative; me 24.5 1.1E+02 0.0036 24.3 5.0 35 80-120 11-46 (269)
195 1t0i_A YLR011WP; FMN binding p 23.9 1.2E+02 0.0041 22.2 5.0 47 68-121 76-122 (191)
196 1uf3_A Hypothetical protein TT 23.9 1.6E+02 0.0054 21.6 5.7 48 67-121 21-69 (228)
197 1z69_A COG2141, coenzyme F420- 23.6 1.1E+02 0.0037 24.7 5.0 40 62-106 284-323 (327)
198 3svl_A Protein YIEF; E. coli C 23.4 1.3E+02 0.0045 22.7 5.2 51 67-122 63-115 (193)
199 1t5b_A Acyl carrier protein ph 23.4 1.1E+02 0.0037 22.4 4.6 28 78-108 86-113 (201)
200 3n2q_A Sex pheromone staph-CAM 23.3 48 0.0017 27.7 2.8 44 77-120 86-134 (287)
201 3mdq_A Exopolyphosphatase; str 23.3 1.6E+02 0.0053 24.3 6.0 88 26-122 4-110 (315)
202 1jbe_A Chemotaxis protein CHEY 23.1 1.6E+02 0.0055 19.1 6.7 61 68-135 39-99 (128)
203 1p6q_A CHEY2; chemotaxis, sign 22.9 1.6E+02 0.0056 19.1 7.8 61 68-135 41-101 (129)
204 3s3t_A Nucleotide-binding prot 22.9 61 0.0021 22.2 2.9 21 67-87 96-117 (146)
205 3huu_A Transcription regulator 22.7 2.7E+02 0.0091 21.5 7.4 44 68-125 73-116 (305)
206 2vtf_A Endo-beta-N-acetylgluco 22.6 2.4E+02 0.0082 26.0 7.5 57 65-123 156-212 (626)
207 3hi0_A Putative exopolyphospha 22.6 3E+02 0.01 24.2 8.0 90 24-122 13-121 (508)
208 3h7f_A Serine hydroxymethyltra 22.5 2.1E+02 0.0073 23.9 6.8 50 67-127 174-224 (447)
209 3c6a_A Terminase large subunit 22.4 2.9E+02 0.01 21.9 7.8 60 23-85 57-123 (232)
210 1mb3_A Cell division response 22.4 1.6E+02 0.0055 18.9 6.6 58 69-133 36-93 (124)
211 3oc6_A 6-phosphogluconolactona 22.3 85 0.0029 25.0 4.0 37 81-125 40-79 (248)
212 1kgs_A DRRD, DNA binding respo 22.3 2.3E+02 0.0079 20.6 7.1 62 68-139 36-97 (225)
213 1rtt_A Conserved hypothetical 22.2 1.3E+02 0.0045 22.1 4.9 37 68-109 64-100 (193)
214 3rqi_A Response regulator prot 22.1 2.2E+02 0.0075 20.3 6.2 59 68-135 41-99 (184)
215 3lua_A Response regulator rece 22.0 1.2E+02 0.0041 20.3 4.3 65 68-139 39-104 (140)
216 1fs5_A Glucosamine-6-phosphate 21.9 1.5E+02 0.0051 23.4 5.4 55 67-125 17-75 (266)
217 1rli_A Trp repressor binding p 21.8 1.2E+02 0.004 21.9 4.5 28 78-108 71-98 (184)
218 3nhm_A Response regulator; pro 21.7 1.8E+02 0.006 19.0 8.4 87 68-164 37-123 (133)
219 2hpv_A FMN-dependent NADH-azor 21.7 1.2E+02 0.0041 22.6 4.6 29 78-109 94-122 (208)
220 3vzx_A Heptaprenylglyceryl pho 21.7 1.3E+02 0.0044 24.1 4.9 38 75-121 28-65 (228)
221 3loq_A Universal stress protei 21.6 2.4E+02 0.0081 21.9 6.6 50 67-123 240-290 (294)
222 2w8t_A SPT, serine palmitoyltr 21.5 1.3E+02 0.0045 24.9 5.2 52 67-127 180-235 (427)
223 2q8u_A Exonuclease, putative; 21.3 2.4E+02 0.0082 22.7 6.7 51 66-121 49-102 (336)
224 2pl1_A Transcriptional regulat 21.3 1.7E+02 0.0058 18.7 7.0 59 68-135 34-92 (121)
225 1iay_A ACC synthase 2, 1-amino 21.2 2.3E+02 0.0079 23.1 6.7 55 67-127 172-232 (428)
226 3hn6_A Glucosamine-6-phosphate 21.2 1.5E+02 0.0051 24.3 5.4 56 66-125 37-96 (289)
227 3rot_A ABC sugar transporter, 21.1 1.7E+02 0.0058 22.6 5.6 45 68-126 52-97 (297)
228 2jk1_A HUPR, hydrogenase trans 21.0 1.9E+02 0.0065 19.2 6.4 63 68-139 34-96 (139)
229 3g1w_A Sugar ABC transporter; 20.9 1.9E+02 0.0064 22.3 5.8 45 68-125 52-96 (305)
230 1mvo_A PHOP response regulator 20.7 1.9E+02 0.0064 19.0 5.2 49 69-126 38-86 (136)
231 2yrr_A Aminotransferase, class 20.7 1.7E+02 0.0059 22.7 5.6 51 67-126 113-164 (353)
232 3cer_A Possible exopolyphospha 20.6 1.3E+02 0.0046 25.1 5.1 90 24-122 14-123 (343)
233 1ii7_A MRE11 nuclease; RAD50, 20.5 3.4E+02 0.011 21.8 7.5 51 67-121 29-81 (333)
234 1qv9_A F420-dependent methylen 20.4 2.3E+02 0.0078 23.5 6.1 74 67-151 49-135 (283)
235 3hdv_A Response regulator; PSI 20.4 1.9E+02 0.0066 19.0 6.2 85 70-164 43-128 (136)
236 3i16_A Aluminum resistance pro 20.3 1.8E+02 0.006 25.0 5.9 54 67-127 164-223 (427)
237 2qzj_A Two-component response 20.1 2E+02 0.007 19.1 7.1 58 68-135 38-95 (136)
No 1
>1nu0_A Hypothetical protein YQGF; structural genomics, structure 2 function project, S2F, unknown function; 1.60A {Escherichia coli} SCOP: c.55.3.8 PDB: 1nmn_A 1ovq_A
Probab=100.00 E-value=1.3e-45 Score=286.10 Aligned_cols=134 Identities=19% Similarity=0.304 Sum_probs=117.1
Q ss_pred CCeEEEEecCCCeEEEEEecCCCceeccceeeeCCCCChhhHHHHHHHHHHhhCCCEEEEecccC-CCCCchHHHHHHHH
Q 030251 25 RGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPFN-RQQNAADAVQVKLF 103 (180)
Q Consensus 25 ~~~iLalD~G~kriGvAvsd~~~~~a~Pl~~i~~~~~~~~~~~~~L~~li~e~~i~~iVVGlP~~-dG~~s~~~~~v~~F 103 (180)
++++||||||+||||||+||+.+.+|+|++||.+++.+. .+++|.+++++|+++.||||+|++ ||+++++++++++|
T Consensus 2 ~~~iLglD~G~kriGvAvsd~~~~~A~pl~ti~~~~~~~--~~~~l~~li~e~~v~~iVvGlP~~mdGt~~~~~~~~~~f 79 (138)
T 1nu0_A 2 SGTLMAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTP--DWNIIERLLKEWQPDEIIVGLPLNMDGTEQPLTARARKF 79 (138)
T ss_dssp CCEEEEEECCSSEEEEEEEETTTTEEEEEEEEEEETTEE--CHHHHHHHHHHHCCSEEEEEEEECTTSCBCHHHHHHHHH
T ss_pred CCeEEEEEeCCCEEEEEEEcCCCCEEeeEEEEEcCCcch--HHHHHHHHHHHcCCCEEEEecccCCCcCcCHHHHHHHHH
Confidence 368999999999999999999999999999998754333 379999999999999999999999 99999999999999
Q ss_pred HHHHHhccCCCCCcEEEecccccHHHHHHHhccCCCCCCCCCCCCcHHHHHHHHHHHHhh
Q 030251 104 IDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKTILDKFAAVGILQEYLDN 163 (180)
Q Consensus 104 ~~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l~~~g~~~~~~k~~iD~~AA~iILq~yL~~ 163 (180)
+++|++. + ++||++|||||||++|++.|++.+.+++++|+.+|++||++|||+||+.
T Consensus 80 ~~~L~~~--~-~lpV~~~DERlTT~~A~~~l~~~~~~~~~~k~~iD~~AA~iILq~yLd~ 136 (138)
T 1nu0_A 80 ANRIHGR--F-GVEVKLHDERLSTVEARSGLFEQGGYRALNKGKVDSASAVIILESYMEQ 136 (138)
T ss_dssp HHHHHHH--H-CCCEEEEEEECCCCCC-------CCCCCCCHHHHTTHHHHHHHHHHHHT
T ss_pred HHHHHHH--h-CCCEEEEcCCcCHHHHHHHHHHhcCcccccCcchhHHHHHHHHHHHHhc
Confidence 9999984 5 7999999999999999999998776777788899999999999999986
No 2
>1vhx_A Putative holliday junction resolvase; structural genomics, hydrolase; 1.96A {Bacillus subtilis} SCOP: c.55.3.8
Probab=100.00 E-value=4.2e-41 Score=263.74 Aligned_cols=139 Identities=28% Similarity=0.449 Sum_probs=126.0
Q ss_pred CeEEEEecCCCeEEEEEecCCCceeccceeeeCCCCChhhHHHHHHHHHHhhCCCEEEEecccC-CCCCchHHHHHHHHH
Q 030251 26 GRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPFN-RQQNAADAVQVKLFI 104 (180)
Q Consensus 26 ~~iLalD~G~kriGvAvsd~~~~~a~Pl~~i~~~~~~~~~~~~~L~~li~e~~i~~iVVGlP~~-dG~~s~~~~~v~~F~ 104 (180)
+++||||||++|||+|++|+.+.+++|+++|.+.+......++.|.+++++|+|+.||||+|++ ||+.+..+.+++.|+
T Consensus 3 mriLGiDpG~~riGvAv~d~~g~~a~p~~~I~~~~~r~~~~~~~l~~li~~~~~~~ivVGlP~~~nGt~~~~~~~ar~f~ 82 (150)
T 1vhx_A 3 LRILGLDLGTKTLGVALSDEMGWTAQGIETIKINEAEGDYGLSRLSELIKDYTIDKIVLGFPKNMNGTVGPRGEASQTFA 82 (150)
T ss_dssp EEEEEEEECSSEEEEEEECTTSSSEEEEEEEECBGGGTBCCHHHHHHHHTTSEEEEEEEECCCCBTTBCCHHHHHHHHHH
T ss_pred CEEEEEEccCCEEEEEEEECCCCEEeeEEEEEcCCcchHHHHHHHHHHHHHcCCCEEEEeeeecCCcchhHHHHHHHHHH
Confidence 5899999999999999999999999999999865311223489999999999999999999999 999999999999999
Q ss_pred HHHHhccCCCCCcEEEecccccHHHHHHHhccCCCCCCCCCCCCcHHHHHHHHHHHHhhhhhh
Q 030251 105 DDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKTILDKFAAVGILQEYLDNANRK 167 (180)
Q Consensus 105 ~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l~~~g~~~~~~k~~iD~~AA~iILq~yL~~~~~~ 167 (180)
..|.+. + ++||++|||||||.+|++.|++.|++++++|+.+|++||++|||+||+..+..
T Consensus 83 ~~L~~~--~-~lpV~~vDEr~Ts~~Ak~~l~~~g~~r~~~k~~iD~~AA~iILq~~L~~~~~~ 142 (150)
T 1vhx_A 83 KVLETT--Y-NVPVVLWDERLTTMAAEKMLIAADVSRQKRKKVIDKMAAVMILQGYLDSLNEG 142 (150)
T ss_dssp HHHHHH--H-CSCEEEECCSSCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHh--h-CCCEEEecCCCCHHHHHHHHHHcCCcccccCccHhHHHHHHHHHHHHhccccc
Confidence 999874 4 79999999999999999999999999888899999999999999999986543
No 3
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Probab=100.00 E-value=1.9e-33 Score=206.19 Aligned_cols=97 Identities=28% Similarity=0.439 Sum_probs=89.5
Q ss_pred CeEEEEecCCCeEEEEEecCCCceeccceeeeCCCCChhhHHHHHHHHHHhhCCCEEEEecccC-CCCCchHHHHHHHHH
Q 030251 26 GRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPFN-RQQNAADAVQVKLFI 104 (180)
Q Consensus 26 ~~iLalD~G~kriGvAvsd~~~~~a~Pl~~i~~~~~~~~~~~~~L~~li~e~~i~~iVVGlP~~-dG~~s~~~~~v~~F~ 104 (180)
+++||||||+||||||+||+.+.+|+|++||.+.+. +..+++|.+++++|+++.||||+|++ ||+++++++++++|+
T Consensus 1 mriLglD~G~kriGvAvsd~~~~~A~pl~ti~~~~~--~~~~~~l~~li~e~~v~~iVvGlP~~mdGt~~~~~~~~~~f~ 78 (98)
T 1iv0_A 1 MRVGALDVGEARIGLAVGEEGVPLASGRGYLVRKTL--EEDVEALLDFVRREGLGKLVVGLPLRTDLKESAQAGKVLPLV 78 (98)
T ss_dssp CCEEEEEESSSEEEEEEECSCCSSCCCEEEEECCCH--HHHHHHHHHHHHHHTCCEEEEECCCCCCSSSCCCSSTTHHHH
T ss_pred CcEEEEEeCCCEEEEEEEeCCCCeeeeeEEEEccCc--HHHHHHHHHHHHHcCCCEEEEeeccCCCCCcCHHHHHHHHHH
Confidence 479999999999999999999999999999985533 34589999999999999999999999 999999999999999
Q ss_pred HHHHhccCCCCCcEEEecccccHH
Q 030251 105 DDLSATKKLEDMKYAYWNEGFTSK 128 (180)
Q Consensus 105 ~~L~~~~~~~~lpV~~~DEr~TT~ 128 (180)
++|++ . ++||++|||||||+
T Consensus 79 ~~L~~---~-~lpV~~~DERlTT~ 98 (98)
T 1iv0_A 79 EALRA---R-GVEVELWDERFTTK 98 (98)
T ss_dssp HHHHH---T-TCEEEEECCSCCCC
T ss_pred HHHhc---C-CCCEEEECCCCCCC
Confidence 99997 2 79999999999984
No 4
>4ep4_A Crossover junction endodeoxyribonuclease RUVC; resolvase, hydrolase; 1.28A {Thermus thermophilus} PDB: 4ep5_A
Probab=98.58 E-value=4.7e-07 Score=71.56 Aligned_cols=102 Identities=16% Similarity=0.094 Sum_probs=72.8
Q ss_pred CeEEEEecCCCeEEEEEecCCCc---eeccc--eeeeCCCCC-----hhhHHHHHHHHHHhhCCCEEEEecccC--CCCC
Q 030251 26 GRFLGLDVGDKYVGLSISDPKNK---IASPL--SVLLRKKNT-----IDLMAEDFRSLISEFNLEGFIVGYPFN--RQQN 93 (180)
Q Consensus 26 ~~iLalD~G~kriGvAvsd~~~~---~a~Pl--~~i~~~~~~-----~~~~~~~L~~li~e~~i~~iVVGlP~~--dG~~ 93 (180)
|+|||||+|..++|+++.|..+. -.+.+ ++|...... ...+++.|.+++++|+|+.++|--|+- |.+.
T Consensus 1 MrILGIDPGl~~tG~gvi~~~g~~~~~~~~v~~G~I~t~~~~~~~~RL~~I~~~l~~~i~~~~Pd~vaiE~~F~~~n~~s 80 (166)
T 4ep4_A 1 MVVAGIDPGITHLGLGVVAVEGKGALKARLLHGEVVKTSPQEPAKERVGRIHARVLEVLHRFRPEAVAVEEQFFYRQNEL 80 (166)
T ss_dssp CEEEEEECCSSEEEEEEEEECSSSSSCEEEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHHCCSEEEEECCCCSSCSHH
T ss_pred CEEEEEccccCceEEEEEEecCCccceEEEEEeCeEECCCCCCHHHHHHHHHHHHHHHHHHhCCCEEEEeehhhccChHH
Confidence 58999999999999999987765 33333 677654321 124578999999999999999999986 5555
Q ss_pred chHHHHHHHHHHHHHhccCCCCCcEEEecccccHHHHHHHh
Q 030251 94 AADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLL 134 (180)
Q Consensus 94 s~~~~~v~~F~~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l 134 (180)
.-..-+++.++...... . ++||..+ |..+.+...
T Consensus 81 al~lgqarGv~~la~~~--~-glpv~ey----tP~~vKkav 114 (166)
T 4ep4_A 81 AYKVGWALGAVLVAAFE--A-GVPVYAY----GPMQVKQAL 114 (166)
T ss_dssp HHHHHHHHHHHHHHHHH--H-TCCEEEE----CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH--c-CCCEEEE----CHHHHHHHh
Confidence 55556666666554432 2 8998876 555555554
No 5
>1hjr_A Holliday junction resolvase (RUVC); site-specific recombinase; 2.50A {Escherichia coli} SCOP: c.55.3.6
Probab=98.14 E-value=4e-05 Score=59.84 Aligned_cols=93 Identities=15% Similarity=0.219 Sum_probs=61.9
Q ss_pred CeEEEEecCCCeEEEEEecCCCceecc--ceeeeCCCCC----hhhHHHHHHHHHHhhCCCEEEEecccC-C-CCCchHH
Q 030251 26 GRFLGLDVGDKYVGLSISDPKNKIASP--LSVLLRKKNT----IDLMAEDFRSLISEFNLEGFIVGYPFN-R-QQNAADA 97 (180)
Q Consensus 26 ~~iLalD~G~kriGvAvsd~~~~~a~P--l~~i~~~~~~----~~~~~~~L~~li~e~~i~~iVVGlP~~-d-G~~s~~~ 97 (180)
++|||||+|..++|+++.+..+.-.+. .++|.....+ ...+.+.|.+++++|+|+.++|=-++- . -+..-..
T Consensus 1 m~ILGIDPGl~~tG~gvi~~~g~~~~~v~~G~i~t~~~~~~~Rl~~i~~~l~~~i~~~~Pd~vaiE~vf~~~n~~s~~~l 80 (158)
T 1hjr_A 1 AIILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPSRLKLIYAGVTEIITQFQPDYFAIEQVFMAKNADSALKL 80 (158)
T ss_dssp CEEEEEECCSSEEEEEEEEEETTEEEEEEEEEEECCCSCHHHHHHHHHHHHHHHHHHHCCSEEEEEECCCCCCTTTHHHH
T ss_pred CEEEEEccCCCCeeEEEEEecCCeEEEEEeeEEECCCCCHHHHHHHHHHHHHHHHHHcCCCEEEEeecccccChHHHHHH
Confidence 589999999999999999865542222 2456554211 123467789999999999999999987 3 3333333
Q ss_pred HHHHHHHHHHHhccCCCCCcEEEe
Q 030251 98 VQVKLFIDDLSATKKLEDMKYAYW 121 (180)
Q Consensus 98 ~~v~~F~~~L~~~~~~~~lpV~~~ 121 (180)
-+++-.+-.... +. ++||..+
T Consensus 81 gqarGv~~~a~~--~~-~ipv~ey 101 (158)
T 1hjr_A 81 GQARGVAIVAAV--NQ-ELPVFEY 101 (158)
T ss_dssp HHHHHHHHHHHH--TT-TCCEEEE
T ss_pred HHHHHHHHHHHH--Hc-CCCEEEE
Confidence 444444444333 23 8998875
No 6
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=97.77 E-value=0.00017 Score=68.82 Aligned_cols=99 Identities=16% Similarity=0.147 Sum_probs=69.4
Q ss_pred CCeEEEEecC-CCeEEEEEecCCCceeccceeeeCCCCC-hhhHHHHHHHHHHhhCCCEEEEecccCCCCCchHHHHHHH
Q 030251 25 RGRFLGLDVG-DKYVGLSISDPKNKIASPLSVLLRKKNT-IDLMAEDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKL 102 (180)
Q Consensus 25 ~~~iLalD~G-~kriGvAvsd~~~~~a~Pl~~i~~~~~~-~~~~~~~L~~li~e~~i~~iVVGlP~~dG~~s~~~~~v~~ 102 (180)
..++||+|+| +.-|.+|+.|..|.+..-..+.+....+ .+...+.|.+++.+|+|+.|+|| +||.|..+ ..
T Consensus 328 ~~~vlg~dpg~r~g~k~a~vd~~G~~l~~~~iy~~~~~~~~~~~~~~l~~li~~~~~~~IaIG----ngtasret---~~ 400 (785)
T 3bzc_A 328 PRATLGLDPGLRTGVKVAVVDATGKLLDTATVYPHAPKNQWDQTLAVLAALCAKHQVELIAIG----NGTASRET---DK 400 (785)
T ss_dssp SCCEEEEECCSSSCEEEEEECTTSCEEEEEEECCSGGGCCHHHHHHHHHHHHHHHTCCEEEEE----SSTTHHHH---HH
T ss_pred CCeEEEECCCCcCceEEEEECCCCCEEEEEEEecCCchhHHHHHHHHHHHHHHHcCCCEEEEC----CCccCHHH---HH
Confidence 3589999999 5778899999998776533222322111 12346899999999999999999 99877544 45
Q ss_pred HHHHHHhccCCCCCcEEEecccccHHHH
Q 030251 103 FIDDLSATKKLEDMKYAYWNEGFTSKGV 130 (180)
Q Consensus 103 F~~~L~~~~~~~~lpV~~~DEr~TT~~A 130 (180)
|...+-+......+++++++|..+++-.
T Consensus 401 ~v~~l~~~~~~~~i~~v~v~e~gArvy~ 428 (785)
T 3bzc_A 401 LAGELIKKYPGMKLTKIMVSEAGASVYS 428 (785)
T ss_dssp HHHHHHHHCGGGCCEEEEECCHHHHHHH
T ss_pred HHHHHHHhcccCCCCEEEEcCCcCCHHH
Confidence 6666543211026899999998876543
No 7
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae}
Probab=97.32 E-value=0.0016 Score=63.89 Aligned_cols=95 Identities=9% Similarity=0.135 Sum_probs=61.1
Q ss_pred CeEEEEecCCCe-----EEEEEecCCCceeccceeee-C--CCCChhhHHHHHHHHHHhhCCCEEEEecccCCCCCchHH
Q 030251 26 GRFLGLDVGDKY-----VGLSISDPKNKIASPLSVLL-R--KKNTIDLMAEDFRSLISEFNLEGFIVGYPFNRQQNAADA 97 (180)
Q Consensus 26 ~~iLalD~G~kr-----iGvAvsd~~~~~a~Pl~~i~-~--~~~~~~~~~~~L~~li~e~~i~~iVVGlP~~dG~~s~~~ 97 (180)
.++||||+|-.. |-+|+.|..|.+..- .+|. . ...+.....+.|.+++.+|+|+.|+|| +|+. +..
T Consensus 519 ~~VlaldpG~~~~~~~g~k~a~vd~~G~~l~~-~~i~~~~~~~~~~~~~~~~l~~li~~~~~~~IaIG----n~s~-et~ 592 (1030)
T 3psf_A 519 PKILSLTCGQGRFGADAIIAVYVNRKGDFIRD-YKIVDNPFDKTNPEKFEDTLDNIIQSCQPNAIGIN----GPNP-KTQ 592 (1030)
T ss_dssp CCEEEEECTTCCTTTSCEEEEEECTTSCEEEE-EEECSCTTCSSCCHHHHHHHHHHHHHHCCSEEEEC----CSST-HHH
T ss_pred CeEEEecCCCCCCCCCCeEEEEECCCCCEEEE-EEEcCCCCChhhHHHHHHHHHHHHHHcCCcEEEEC----CCCH-HHH
Confidence 499999999763 778999999877653 3442 1 111222335899999999999999999 6644 222
Q ss_pred HHHHHHHHHHHhcc----CCCCCcEEEeccccc
Q 030251 98 VQVKLFIDDLSATK----KLEDMKYAYWNEGFT 126 (180)
Q Consensus 98 ~~v~~F~~~L~~~~----~~~~lpV~~~DEr~T 126 (180)
+.++...+.+++.. ...+++|+++||..-
T Consensus 593 ~l~~~l~~~i~~~~~~~~~~~~i~~~iV~e~gA 625 (1030)
T 3psf_A 593 KFYKRLQEVLHKKQIVDSRGHTIPIIYVEDEVA 625 (1030)
T ss_dssp HHHHHHHHHHHHTTCBCTTSCBCCEEECCCTTH
T ss_pred HHHHHHHHHHHhhccccccCCCccEEEecchHH
Confidence 22233333333210 012589999999883
No 8
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}
Probab=97.05 E-value=0.004 Score=61.94 Aligned_cols=95 Identities=9% Similarity=0.135 Sum_probs=60.6
Q ss_pred CeEEEEecCCCe-----EEEEEecCCCceeccceeee-C--CCCChhhHHHHHHHHHHhhCCCEEEEecccCCCCCchHH
Q 030251 26 GRFLGLDVGDKY-----VGLSISDPKNKIASPLSVLL-R--KKNTIDLMAEDFRSLISEFNLEGFIVGYPFNRQQNAADA 97 (180)
Q Consensus 26 ~~iLalD~G~kr-----iGvAvsd~~~~~a~Pl~~i~-~--~~~~~~~~~~~L~~li~e~~i~~iVVGlP~~dG~~s~~~ 97 (180)
.++||||+|... |-+|+.|..|.+..- .+|. . ...+.....+.|.+++.+++|+.|+|| +|+. +..
T Consensus 516 ~~VlaldpG~r~~g~~g~k~a~vD~~G~vl~~-~~i~~~~~~~~~~~~a~~~l~~li~~~~~~vIaIG----n~sr-et~ 589 (1219)
T 3psi_A 516 PKILSLTCGQGRFGADAIIAVYVNRKGDFIRD-YKIVDNPFDKTNPEKFEDTLDNIIQSCQPNAIGIN----GPNP-KTQ 589 (1219)
T ss_dssp CCEEEEECTTCCTTTTCEEEEEECTTSCEEEE-EEECSCTTCSSCSHHHHHHHHHHHHHHCCSEEEEC----CSST-HHH
T ss_pred CeEEEecCCCCCCCCCceEEEEECCCCCEEEE-EEEcCCCCChhhHHHHHHHHHHHHHHcCCcEEEEC----CCCH-HHH
Confidence 499999999863 677999999877653 3442 1 111222235899999999999999999 7642 112
Q ss_pred HHHHHHHHHHHhcc----CCCCCcEEEeccccc
Q 030251 98 VQVKLFIDDLSATK----KLEDMKYAYWNEGFT 126 (180)
Q Consensus 98 ~~v~~F~~~L~~~~----~~~~lpV~~~DEr~T 126 (180)
+.++...+.+++.. ...+++|+++||..-
T Consensus 590 ~l~~~l~~~i~~~~~~~~~~~~i~vviV~e~gA 622 (1219)
T 3psi_A 590 KFYKRLQEVLHKKQIVDSRGHTIPIIYVEDEVA 622 (1219)
T ss_dssp HHHHHHHHHHHHTTCBCSSSCBCCEEECCCTTH
T ss_pred HHHHHHHHHHHhhccccccCCCccEEEECchHH
Confidence 22222333333210 012589999999884
No 9
>3vov_A Glucokinase, hexokinase; ROK, sugar kinase, transferase; 2.02A {Thermus thermophilus}
Probab=95.96 E-value=0.021 Score=47.61 Aligned_cols=103 Identities=17% Similarity=0.092 Sum_probs=66.0
Q ss_pred CeEEEEecCCCeEEEEEecCCCceeccceeeeCCCCChhhHHHHHHHHHHh------hCCCEEEEecccC-C---CCCc-
Q 030251 26 GRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISE------FNLEGFIVGYPFN-R---QQNA- 94 (180)
Q Consensus 26 ~~iLalD~G~kriGvAvsd~~~~~a~Pl~~i~~~~~~~~~~~~~L~~li~e------~~i~~iVVGlP~~-d---G~~s- 94 (180)
|.++|+|+|..+|-+++.|..+.+.+ ..++......+.+++.|.+++++ .++.+|.||.|=. | |...
T Consensus 1 M~~lgiDiGgt~i~~~l~d~~~~l~~--~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~i~gigi~~pG~vd~~~g~v~~ 78 (302)
T 3vov_A 1 MKVVGLDLGGTKIAAGVFDGKRLLSK--VVVPTPKEGGERVAEALAEAAERAEREAGVRGEAIGLGTPGPLDFRRGVIRF 78 (302)
T ss_dssp CCEEEEEECSSEEEEEEECSSSBSCC--EEEECCSSCHHHHHHHHHHHHHHHHHHHTCCCSSEEEEESSCEETTTTEEC-
T ss_pred CEEEEEEEcCCEEEEEEEeCCCcEEE--EEEcCCCCChHHHHHHHHHHHHHHHhhccCCceEEEEEecccEeCCCCEEEc
Confidence 36899999999999999998755532 34444333224456666666554 4799999999855 4 2111
Q ss_pred -h---HHHHHHHHHHHHHhccCCCCCcEEEecccccHHHHHHHh
Q 030251 95 -A---DAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLL 134 (180)
Q Consensus 95 -~---~~~~v~~F~~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l 134 (180)
+ .... ..+.+.|++. + ++||++.+.--...-|+..+
T Consensus 79 ~~~~~~w~~-~~l~~~l~~~--~-~~pv~v~NDa~aaal~E~~~ 118 (302)
T 3vov_A 79 APNIPGVQD-FPIRRILEEA--T-GRPVFLENDANAAALAEHHL 118 (302)
T ss_dssp --CCTTCTT-CCHHHHHHHH--H-SSCEEEEEHHHHHHHHHHHH
T ss_pred CCCCCCcCC-CChHHHHHHh--h-CCCEEEEechHHHHHHHHHh
Confidence 0 0000 1345667764 4 78999988877776666554
No 10
>2gup_A ROK family protein; sugar kinase, streptococcus pneumoniae TIGR4, AP sucrose, structural genomics, PSI; HET: SUC; 2.01A {Streptococcus pneumoniae} SCOP: c.55.1.10 c.55.1.10
Probab=95.07 E-value=0.066 Score=43.78 Aligned_cols=100 Identities=13% Similarity=0.136 Sum_probs=66.0
Q ss_pred CeEEEEecCCCeEEEEEecCCCceeccceeeeCCCCChhhHHHHHHHHHHhhCCCEEEEecccC-C---CCCc--hH---
Q 030251 26 GRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPFN-R---QQNA--AD--- 96 (180)
Q Consensus 26 ~~iLalD~G~kriGvAvsd~~~~~a~Pl~~i~~~~~~~~~~~~~L~~li~e~~i~~iVVGlP~~-d---G~~s--~~--- 96 (180)
|.++|+|+|..+|=+++.|..+.+..- ..++.. .+.+.+++.|.+++++.++.+|.||.|=. | |... +.
T Consensus 4 m~~lgidiggt~i~~~l~d~~g~il~~-~~~~~~-~~~~~~~~~i~~~i~~~~i~gigi~~pG~vd~~~g~v~~~~~~~~ 81 (292)
T 2gup_A 4 MTIATIDIGGTGIKFASLTPDGKILDK-TSISTP-ENLEDLLAWLDQRLSEQDYSGIAMSVPGAVNQETGVIDGFSAVPY 81 (292)
T ss_dssp CCEEEEEEETTEEEEEEECTTCCEEEE-EEECCC-SSHHHHHHHHHHHHTTSCCSEEEEEESSEECTTTCBEESCCSSGG
T ss_pred cEEEEEEECCCEEEEEEECCCCCEEEE-EEEeCC-CCHHHHHHHHHHHHHhCCCcEEEEEecCcccCCCCEEEecCCCCc
Confidence 469999999999999999977654321 223322 23456678888888887899999999854 3 3211 10
Q ss_pred HHHHHHHHHHHHhccCCCCCcEEEecccccHHHHHH
Q 030251 97 AVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVEL 132 (180)
Q Consensus 97 ~~~v~~F~~~L~~~~~~~~lpV~~~DEr~TT~~A~~ 132 (180)
... ..+.+.| +. + ++||++.+.-....-|+.
T Consensus 82 ~~~-~~l~~~l-~~--~-~~pv~v~NDa~aaa~~e~ 112 (292)
T 2gup_A 82 IHG-FSWYEAL-SS--Y-QLPVHLENDANCVGLSEL 112 (292)
T ss_dssp GSS-SBHHHHT-GG--G-CCCEEEEEHHHHHHHHHH
T ss_pred ccC-CCHHHHH-HH--c-CCCEEEechHHHHHHHHH
Confidence 001 1356667 53 5 789988887666555543
No 11
>2ch5_A NAGK protein; transferase, N-acetylglucosamine, glcnac, sugar kinase, RIBO H fold, sugar kinase/HSP70/actin superfamily, domain rotati conformation; HET: NAG NDG; 1.9A {Homo sapiens} SCOP: c.55.1.5 c.55.1.5 PDB: 2ch6_A*
Probab=94.83 E-value=0.14 Score=42.71 Aligned_cols=95 Identities=13% Similarity=0.168 Sum_probs=60.5
Q ss_pred eEEEEecCCCeEEEEEecCCCceeccceeeeCCC---CChhhHHHHHHHHHHhh----------CCCEEEEecccC-CCC
Q 030251 27 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKK---NTIDLMAEDFRSLISEF----------NLEGFIVGYPFN-RQQ 92 (180)
Q Consensus 27 ~iLalD~G~kriGvAvsd~~~~~a~Pl~~i~~~~---~~~~~~~~~L~~li~e~----------~i~~iVVGlP~~-dG~ 92 (180)
.+||+|.|..+|=+++.|..+.+..- ......+ .+.+.+++.|.+.+++. ++.+|-||.|=- +..
T Consensus 7 ~~lgiDiGgt~~~~~l~d~~g~i~~~-~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~i~gigi~~pG~vd~~ 85 (347)
T 2ch5_A 7 IYGGVEGGGTRSEVLLVSEDGKILAE-ADGLSTNHWLIGTDKCVERINEMVNRAKRKAGVDPLVPLRSLGLSLSGGDQED 85 (347)
T ss_dssp EEEEEEECTTCEEEEEEETTSCEEEE-EEECCCCHHHHCHHHHHHHHHHHHHHHHHHHTCCTTCCBSEEEEEETTTTCHH
T ss_pred EEEEEEcCccceEEEEEeCCCCEEEE-EeCCCCCcccCCHHHHHHHHHHHHHHHHHhcCCCcccceeEEEEeccCCCchH
Confidence 68999999999999999977654321 2221111 12334456666555431 578999998755 322
Q ss_pred CchHHHHHHHHHHHHHhccCCC--CCcEEEecccccHHHH
Q 030251 93 NAADAVQVKLFIDDLSATKKLE--DMKYAYWNEGFTSKGV 130 (180)
Q Consensus 93 ~s~~~~~v~~F~~~L~~~~~~~--~lpV~~~DEr~TT~~A 130 (180)
.-..+.+.|++. ++ ++||++.+.-.....|
T Consensus 86 ------~~~~l~~~l~~~--~~~~~~pv~v~NDa~aaa~a 117 (347)
T 2ch5_A 86 ------AGRILIEELRDR--FPYLSESYLITTDAAGSIAT 117 (347)
T ss_dssp ------HHHHHHHHHHHH--CTTSBSCEEEEEHHHHHHHH
T ss_pred ------HHHHHHHHHHHh--cCCCCceEEEECcHHHHHHh
Confidence 123566777764 53 3899998877666655
No 12
>2e2o_A Hexokinase; acetate and sugar kinases, HSP70, actin superfamily, ribonuc fold, sugar kinase, glucose, phosphoryl transfer, transferase; HET: BGC; 1.65A {Sulfolobus tokodaii} PDB: 2e2n_A* 2e2p_A* 2e2q_A*
Probab=94.50 E-value=0.26 Score=40.34 Aligned_cols=97 Identities=11% Similarity=0.008 Sum_probs=62.2
Q ss_pred CeEEEEecCCCeEEEEEecCCCceeccceeeeCCC---CChhhHHHHHHHHHHhh---CCCEEEEecccCCCCCchHHHH
Q 030251 26 GRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKK---NTIDLMAEDFRSLISEF---NLEGFIVGYPFNRQQNAADAVQ 99 (180)
Q Consensus 26 ~~iLalD~G~kriGvAvsd~~~~~a~Pl~~i~~~~---~~~~~~~~~L~~li~e~---~i~~iVVGlP~~dG~~s~~~~~ 99 (180)
|.+||+|.|..+|=+++.|..+.+..- ...+..+ .+.+.+++.|.+.+++. .+.++.||.|=. .....
T Consensus 2 M~~lgiDiGgt~~~~~l~d~~g~i~~~-~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~igi~~~G~-~~~~~---- 75 (299)
T 2e2o_A 2 MIIVGVDAGGTKTKAVAYDCEGNFIGE-GSSGPGNYHNVGLTRAIENIKEAVKIAAKGEADVVGMGVAGL-DSKFD---- 75 (299)
T ss_dssp CCEEEEEECSSCEEEEEECTTSCEEEE-EEESCCCHHHHCHHHHHHHHHHHHHHHHTSCCSEEEEEETTC-CSHHH----
T ss_pred eEEEEEEeCCCcEEEEEEcCCCCEEEE-EeCCCCCcccCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCCC-CchhH----
Confidence 368999999999999999987654321 2233221 23345567777776653 278899998744 11111
Q ss_pred HHHHHHHHHhccCCCCCcEEEecccccHHHHHH
Q 030251 100 VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVEL 132 (180)
Q Consensus 100 v~~F~~~L~~~~~~~~lpV~~~DEr~TT~~A~~ 132 (180)
+..+.+.|++ + ++||++++.--....|+.
T Consensus 76 ~~~l~~~l~~---~-~~pv~v~ND~~aaa~~e~ 104 (299)
T 2e2o_A 76 WENFTPLASL---I-APKVIIQHDGVIALFAET 104 (299)
T ss_dssp HHHHHHHHTT---S-SSEEEEEEHHHHHHHHHH
T ss_pred HHHHHHHHHh---C-CCCEEEeCcHHHHHhhcc
Confidence 1356666764 4 689999887766666654
No 13
>3djc_A Type III pantothenate kinase; structural genomics, putative transfera 2, protein structure initiative; 2.40A {Legionella pneumophila subsp}
Probab=94.38 E-value=0.35 Score=40.19 Aligned_cols=58 Identities=19% Similarity=0.146 Sum_probs=40.8
Q ss_pred CeEEEEecCCCeEEEEEecCCCceeccceeeeCCCCChhhHHHHHHHHHHhhC-----CCEEEEe
Q 030251 26 GRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFN-----LEGFIVG 85 (180)
Q Consensus 26 ~~iLalD~G~kriGvAvsd~~~~~a~Pl~~i~~~~~~~~~~~~~L~~li~e~~-----i~~iVVG 85 (180)
+++|+||+|..+|=+|+-|....... ..+++.....+.+...|..++++++ +++++|+
T Consensus 2 ~MlL~IDIGNT~iK~gl~d~~~l~~~--~r~~T~~~t~de~~~~l~~ll~~~~~~~~~I~~iiIS 64 (266)
T 3djc_A 2 SLILCIDVGNSHIYGGVFDGDEIKLR--FRHTSKVSTSDELGIFLKSVLRENNCSPETIRKIAIC 64 (266)
T ss_dssp -CEEEEEECSSEEEEEEEETTEEEEE--EEEECSCCCHHHHHHHHHHHHHTTTCCGGGCCEEEEE
T ss_pred ceEEEEEECCCeEEEEEEECCEEEEE--EEecCCCCCHHHHHHHHHHHHHHcCCChhhceEEEEe
Confidence 47999999999999999997533222 2333332334555677888888765 8899999
No 14
>3epq_A Putative fructokinase; SCRK, ADP binding, PSI2, MCSG, structural GENO protein structure initiative, midwest center for structural genomics; HET: MLY MSE MLZ ADP; 1.66A {Bacillus subtilis} PDB: 1xc3_A 3ohr_A* 3lm9_A*
Probab=94.21 E-value=0.16 Score=42.30 Aligned_cols=102 Identities=12% Similarity=0.119 Sum_probs=70.1
Q ss_pred CeEEEEecCCCeEEEEEecCCCceeccceeeeCCCCChhhHHHHHHHHHHhhCCCEEEEecccC-C--------CCC--c
Q 030251 26 GRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPFN-R--------QQN--A 94 (180)
Q Consensus 26 ~~iLalD~G~kriGvAvsd~~~~~a~Pl~~i~~~~~~~~~~~~~L~~li~e~~i~~iVVGlP~~-d--------G~~--s 94 (180)
..++|+|+|..+|=+|+.|..+.+..- ..++.. +.+.+++.+.+.++++++.+|-||.|=- | |.. +
T Consensus 3 ~~~lgiDiGgt~i~~~l~d~~G~il~~-~~~~t~--~~~~~l~~i~~~~~~~~i~gigi~~pG~vd~~~~~~~~G~i~~~ 79 (302)
T 3epq_A 3 AMLGGIEAGGTXFVCAVGREDGTIIDR-IEFPTX--MPDETIEXVIQYFSQFSLQAIGIGSFGPVDNDXTSQTYGTITAT 79 (302)
T ss_dssp CCEEEEEECSSEEEEEEECTTSCEEEE-EEEECC--CHHHHHHHHHHHHTTSCCSEEEEEECSSEECCTTSTTTTEECCC
T ss_pred cEEEEEEECcceeEEEEEECCCcEEEE-EEecCC--ChHHHHHHHHHHhccCCceEEEEEeceeeccccccccccEEecC
Confidence 578999999999999999987765432 344443 2345678888888888999999999754 3 210 1
Q ss_pred hH--HHHHHHHHHHHHhccCCCCCcEEEecccccHHHHHHHh
Q 030251 95 AD--AVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLL 134 (180)
Q Consensus 95 ~~--~~~v~~F~~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l 134 (180)
+. ... ..+.+.|+++ + ++||++.+.--...-|+.++
T Consensus 80 ~~~~w~~-~~l~~~l~~~--~-~~pV~v~NDanaaalaE~~~ 117 (302)
T 3epq_A 80 PXAGWRH-YPFLQTVXNE--M-XIPVGFSTDVNAAALGEFLF 117 (302)
T ss_dssp SSTTTBT-CCHHHHHHHH--H-CSCEEEEEHHHHHHHHHHHH
T ss_pred CCCCccC-CChHHHHHHH--h-CCCEEEechhHHHHHHHHHh
Confidence 10 010 2356677764 4 78999888777766666654
No 15
>3vgl_A Glucokinase; ROK family, transferase; HET: BGC ANP; 1.55A {Streptomyces griseus} PDB: 3vgk_A* 3vgm_A*
Probab=94.09 E-value=0.17 Score=42.15 Aligned_cols=104 Identities=13% Similarity=0.161 Sum_probs=65.1
Q ss_pred CeEEEEecCCCeEEEEEecCCCceeccceeeeCCCCChhhHHHHHHHHHHh----hCCCEEEEecccC-C---CCCc--h
Q 030251 26 GRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISE----FNLEGFIVGYPFN-R---QQNA--A 95 (180)
Q Consensus 26 ~~iLalD~G~kriGvAvsd~~~~~a~Pl~~i~~~~~~~~~~~~~L~~li~e----~~i~~iVVGlP~~-d---G~~s--~ 95 (180)
+.+||+|+|..+|=+++.|..+.+..- ..++.. .+.+.+++.|.+.+++ +++.+|.||.|=- | |... +
T Consensus 2 ~~~lgiDiGgt~i~~~l~d~~G~i~~~-~~~~~~-~~~~~~~~~i~~~i~~~~~~~~i~gigi~~pG~vd~~~g~v~~~~ 79 (321)
T 3vgl_A 2 GLTIGVDIGGTKIAAGVVDEEGRILST-FKVATP-PTAEGIVDAICAAVAGASEGHDVEAVGIGAAGYVDDKRATVLFAP 79 (321)
T ss_dssp CEEEEEEECSSEEEEEEECTTCCBCCC-EEEECC-SSHHHHHHHHHHHHHHHHTTCCEEEEEEEESSEECTTSSCEEECS
T ss_pred cEEEEEEECCCEEEEEEECCCCCEEEE-EEeeCC-CCHHHHHHHHHHHHHHHHhhcCceEEEEeccccEeCCCCEEEeCC
Confidence 579999999999999999987655432 333332 2344556666665544 5789999999844 3 2211 0
Q ss_pred HHH-HHHHHHHHHHhccCCCCCcEEEecccccHHHHHHHh
Q 030251 96 DAV-QVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLL 134 (180)
Q Consensus 96 ~~~-~v~~F~~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l 134 (180)
... .-..+.+.|++. + ++||++.+.--...-|+..+
T Consensus 80 ~l~w~~~~l~~~l~~~--~-~~pv~v~NDa~aaal~E~~~ 116 (321)
T 3vgl_A 80 NIDWRHEPLKDKVEQR--V-GLPVVVENDANAAAWGEYRF 116 (321)
T ss_dssp SSCCEEECHHHHHHHH--H-CSCEEEEEHHHHHHHHHHHH
T ss_pred CCCCcCCCHHHHHhhh--h-CCCEEEEehhhhHHHHHHHh
Confidence 000 001345567663 4 78999888876666666554
No 16
>3r6m_A YEAZ, resuscitation promoting factor; actin/HSP70 nucleotide-binding fold, bacterial resuscitation BUT non-culturable state, Y YJEE; 3.10A {Vibrio parahaemolyticus}
Probab=94.07 E-value=0.76 Score=36.96 Aligned_cols=92 Identities=10% Similarity=0.115 Sum_probs=61.9
Q ss_pred CeEEEEecCCCeEEEEEecCCCceeccceeeeCCCCChhhHHHHHHHHHHhh-----CCCEEEEecccCCCCCchHH-HH
Q 030251 26 GRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEF-----NLEGFIVGYPFNRQQNAADA-VQ 99 (180)
Q Consensus 26 ~~iLalD~G~kriGvAvsd~~~~~a~Pl~~i~~~~~~~~~~~~~L~~li~e~-----~i~~iVVGlP~~dG~~s~~~-~~ 99 (180)
|++||||--+..+++|+.+....++. ... ..+ ...+.+...+++++++. +++.|+|+ .|=-+-.. +.
T Consensus 2 M~iLaIdTS~~~~svAl~~~~~~~~~-~~~-~~~-~Hs~~L~p~i~~~L~~a~~~~~dld~Iav~----~GPGsfTglRi 74 (213)
T 3r6m_A 2 AKILAIDTATENCSVALLVNDQVISR-SEV-APR-DHTKKVLPMVDEVLKEAGLTLQDLDALAFG----RGPGSFTGVRI 74 (213)
T ss_dssp CCEEEEECSSSEEEEEEESSSCEEEE-EEE-CCS-CCHHHHHHHHHHHHHTTTCCTTTCSEEEEE----EESSCHHHHHH
T ss_pred CEEEEEEccCcceEEEEEECCEEEEE-EEe-chH-HHHHHHHHHHHHHHHHcCCCHHHccEEEEe----cCCCchhhHHH
Confidence 68999999999999999987554444 222 222 22335567788888774 68999998 44333333 33
Q ss_pred HHHHHHHHHhccCCCCCcEEEecccccHHHHH
Q 030251 100 VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVE 131 (180)
Q Consensus 100 v~~F~~~L~~~~~~~~lpV~~~DEr~TT~~A~ 131 (180)
.-.+++-|... + ++|++-+ ||.+|.
T Consensus 75 g~~~AkgLa~~--~-~iPl~gV----stL~a~ 99 (213)
T 3r6m_A 75 GIGIAQGLAFG--A-ELPMIGV----STLAAM 99 (213)
T ss_dssp HHHHHHHHHHH--T-TCCEEEE----EHHHHH
T ss_pred HHHHHHHHHHH--h-CCCEEEE----cCHHHH
Confidence 47889989864 3 7888876 455544
No 17
>1saz_A Probable butyrate kinase 2; askha (acetate and sugar kinases, HSC70, actin) superfamily, acetate kinase, isobutyrate kinase; HET: ACP; 2.50A {Thermotoga maritima} SCOP: c.55.1.2 c.55.1.2 PDB: 1x9j_A*
Probab=93.80 E-value=0.35 Score=41.62 Aligned_cols=93 Identities=14% Similarity=0.127 Sum_probs=56.1
Q ss_pred CeEEEEecCCCeEEEEEecCCCceeccceeeeCCC-----C--ChhhH---HHHHHHHHHhh-----CCCEEEEeccc--
Q 030251 26 GRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKK-----N--TIDLM---AEDFRSLISEF-----NLEGFIVGYPF-- 88 (180)
Q Consensus 26 ~~iLalD~G~kriGvAvsd~~~~~a~Pl~~i~~~~-----~--~~~~~---~~~L~~li~e~-----~i~~iVVGlP~-- 88 (180)
+.+||||+|..+|=+|+.|....+++ ..++... . -.+.+ .+.+.+++.+. ++.+| ||.|=
T Consensus 2 ~~vlgidiGgt~ik~al~d~~~il~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~i~gI-i~~pG~v 78 (381)
T 1saz_A 2 FRILTINPGSTSTKLSIFEDERMVKM--QNFSHSPDELGRFQKILDQLEFREKIARQFVEETGYSLSSFSAF-VSRGGLL 78 (381)
T ss_dssp CEEEEEEECSSEEEEEEEETTEEEEE--EEEECCHHHHHTCSSGGGGHHHHHHHHHHHHHTTTCCGGGCSEE-EEECCSC
T ss_pred CeEEEEECCccceeEEEEecchheee--eecccCcccccchhhHHHHHHHHHHHHHHHHHHcCCCccCceEE-EecCCCC
Confidence 57999999999999999996533332 2333221 0 01223 45666666654 58899 99873
Q ss_pred C--CCCC------------------chHHHHHHHHHHHHHhccCCCCCcEEEecccc
Q 030251 89 N--RQQN------------------AADAVQVKLFIDDLSATKKLEDMKYAYWNEGF 125 (180)
Q Consensus 89 ~--dG~~------------------s~~~~~v~~F~~~L~~~~~~~~lpV~~~DEr~ 125 (180)
+ .|.. .+..-. -.+++.|++. + ++||++.|.-.
T Consensus 79 d~~~G~~~~i~~~~~~~l~~~~~~~~~~nl~-~~l~~~l~~~--~-~~Pv~v~NDan 131 (381)
T 1saz_A 79 DPIPGGVYLVDGLMIKTLKSGKNGEHASNLG-AIIAHRFSSE--T-GVPAYVVDPVV 131 (381)
T ss_dssp SCBCSSEEECCHHHHHHHHHTTTCCCTTHHH-HHHHHHHHHH--H-CCCEEEESCTT
T ss_pred CCCCCceEecCHHHHHHHHhcccccChhhhh-HHHHHHHHHh--c-CCCEEEeCCCc
Confidence 2 3543 111112 2456667764 4 78998777665
No 18
>3mcp_A Glucokinase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, transferase; 3.00A {Parabacteroides distasonis}
Probab=93.77 E-value=0.31 Score=42.13 Aligned_cols=108 Identities=14% Similarity=0.008 Sum_probs=70.0
Q ss_pred CCCCeEEEEecCCCeEEEEEecCCCceeccceeeeCCCCChhhHHHHHHH---HHHhh---CCCEEEEecccC-C---CC
Q 030251 23 SKRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRS---LISEF---NLEGFIVGYPFN-R---QQ 92 (180)
Q Consensus 23 ~~~~~iLalD~G~kriGvAvsd~~~~~a~Pl~~i~~~~~~~~~~~~~L~~---li~e~---~i~~iVVGlP~~-d---G~ 92 (180)
+....++|+|+|..++-+++.| .+.+..-...++....+.+.+++.|.+ .+++. ++.+|.||.|=- | |.
T Consensus 6 ~d~~~~lgiDIGgt~i~~~l~d-~G~il~~~~~~~~~~~~~~~~l~~i~~~~~~i~~~~~~~i~gIGIavPG~Vd~~~G~ 84 (366)
T 3mcp_A 6 NDNRIVMTLDAGGTNFVFSAIQ-GGKEIADPVVLPACADCLDKCLGNLVEGFKAIQAGLPEAPVAISFAFPGPADYQAGI 84 (366)
T ss_dssp TCCCEEEEEECSSSEEEEEEEE-TTEECSCCEEEECCTTCHHHHHHHHHHHHHHHHTTCSSCCCEEEEECCSSEETTTTE
T ss_pred CCCCEEEEEEECcceEEEEEEE-CCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHhhcCCeEEEEEecceEeCCCCE
Confidence 4567899999999999999999 765543221444443345566778887 77764 799999999854 3 32
Q ss_pred C--chHHHHH---HHHHHHHHhccCCCCCcEEEecccccHHHHHHHh
Q 030251 93 N--AADAVQV---KLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLL 134 (180)
Q Consensus 93 ~--s~~~~~v---~~F~~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l 134 (180)
. ++..... -.+.+.|++. + ++||++.+.--...-|+..+
T Consensus 85 i~~~~nlp~w~~~~~l~~~L~~~--~-g~PV~veNDanaaAlgE~~~ 128 (366)
T 3mcp_A 85 IGDLPNFPSFRGGVALGPFLEDI--F-GIPVFINNDGSLFAYGEALT 128 (366)
T ss_dssp ECCCTTCGGGTTCBCHHHHHHHH--H-CSCEEEECHHHHHHHHHHHT
T ss_pred EEeCCCcccccCCCCHHHHHHHH--H-CCCEEEechhhHHHHHHHHh
Confidence 1 1111001 1455667764 4 78988888766655555543
No 19
>4htl_A Beta-glucoside kinase; structural genomics, sugar kinase, ROK family, PSI-biology, center for structural genomics, MCSG, transferase; HET: MSE; 1.64A {Listeria monocytogenes}
Probab=93.61 E-value=0.29 Score=40.37 Aligned_cols=104 Identities=14% Similarity=0.114 Sum_probs=67.7
Q ss_pred CeEEEEecCCCeEEEEEecCCCceeccceeeeCCCCChhhHHHHHHHHHHh-hCCCEEEEecccC-C---CCCc--hH--
Q 030251 26 GRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISE-FNLEGFIVGYPFN-R---QQNA--AD-- 96 (180)
Q Consensus 26 ~~iLalD~G~kriGvAvsd~~~~~a~Pl~~i~~~~~~~~~~~~~L~~li~e-~~i~~iVVGlP~~-d---G~~s--~~-- 96 (180)
+.++|+|+|..+|=+++.|..+.+..- ..++....+.+.+++.+.+.+.+ .++.+|-||.|=. | |... +.
T Consensus 4 m~~lgiDiGgt~i~~~l~d~~G~il~~-~~~~~~~~~~~~~~~~i~~~~~~~~~i~gigi~~pG~vd~~~g~v~~~~~l~ 82 (297)
T 4htl_A 4 MKIAAFDIGGTALKMGVVLPHGEIILT-KSAEISGSDGDQILAEMKVFLAENTDVTGIAVSAPGYVNPKTGLITMGGAIR 82 (297)
T ss_dssp CCEEEEEECSSEEEEEEECTTSCEEEE-EEEECSTTCHHHHHHHHHHHHHTCTTCCEEEEEESSEECTTTCEEEECTTCG
T ss_pred cEEEEEEeCCCeEEEEEECCCCCEEEE-EEecCCCCCHHHHHHHHHHHHhhcCCeeEEEEecCcceeCCCCEEEeCCCCC
Confidence 579999999999999999987765432 33333333334566777777765 4689999999854 3 3211 10
Q ss_pred -HHHHHHHHHHHHhccCCCCCcEEEecccccHHHHHHHh
Q 030251 97 -AVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLL 134 (180)
Q Consensus 97 -~~~v~~F~~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l 134 (180)
... ..+.+.|++. + ++||++.+.--...-|+.++
T Consensus 83 ~w~~-~~l~~~l~~~--~-~~pV~v~NDa~aaal~E~~~ 117 (297)
T 4htl_A 83 RFDN-FNLKEWLEAE--T-GLPVAIENDANCALLAEKWL 117 (297)
T ss_dssp GGTT-EEHHHHHHHH--H-CSCEEEEEHHHHHHHHHHHH
T ss_pred CccC-CCHHHHHHHH--H-CcCEEEecHHHHHHHHHHHh
Confidence 111 1356667764 4 78999888766666666554
No 20
>2gel_A Putative GRAM negative resuscitation promoting FA; YEAZ, RPF, actin-like-fold, glycoprotease, chaperone; 2.05A {Salmonella typhimurium} PDB: 2gem_A 1okj_A
Probab=92.72 E-value=2.8 Score=33.69 Aligned_cols=86 Identities=9% Similarity=0.087 Sum_probs=57.2
Q ss_pred eEEEEecCCCeEEEEEecCCCceeccceeeeCCCCChhhHHHHHHHHHHhh-----CCCEEEEecccCCCCCchH-HHHH
Q 030251 27 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEF-----NLEGFIVGYPFNRQQNAAD-AVQV 100 (180)
Q Consensus 27 ~iLalD~G~kriGvAvsd~~~~~a~Pl~~i~~~~~~~~~~~~~L~~li~e~-----~i~~iVVGlP~~dG~~s~~-~~~v 100 (180)
.+||||--+..+++|+.+....++.+ ........+.+...|++++++. +++.|+|| .|=-+-. .+..
T Consensus 2 ~iL~idTs~~~~sval~~~~~~~~~~---~~~~~~h~~~l~~~i~~~L~~a~~~~~did~Iav~----~GPGsftglRig 74 (231)
T 2gel_A 2 RILAIDTATEACSVALWNNGTINAHF---ELCPREHTQRILPMVQEILAASGASLNEIDALAFG----RGPGSFTGVRIG 74 (231)
T ss_dssp EEEEEECSSSEEEEEEEETTEEEEEE---EECCSCCHHHHHHHHHHHHHHTTCCGGGCSEEEEE----CCSSCHHHHHHH
T ss_pred eEEEEECCCcCeEEEEEECCEEEEEE---hhhhHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEE----cCCChhHhHHHH
Confidence 69999999999999999865433321 1222223334567778887775 47999999 4432222 3333
Q ss_pred HHHHHHHHhccCCCCCcEEEec
Q 030251 101 KLFIDDLSATKKLEDMKYAYWN 122 (180)
Q Consensus 101 ~~F~~~L~~~~~~~~lpV~~~D 122 (180)
..|++.|... + ++|++-++
T Consensus 75 ~~~ak~la~~--~-~~Pl~~V~ 93 (231)
T 2gel_A 75 IGIAQGLALG--A-NLPMIGVS 93 (231)
T ss_dssp HHHHHHHHHT--T-TCCEEEEC
T ss_pred HHHHHHHHHH--c-CCCEEEec
Confidence 6899999863 3 78988765
No 21
>2aa4_A Mannac kinase, putative N-acetylmannosamine kinase; sugar methabolism, structural genomics, PSI, protein structure initiative; 2.20A {Escherichia coli} SCOP: c.55.1.10 c.55.1.10
Probab=92.71 E-value=0.39 Score=38.96 Aligned_cols=104 Identities=12% Similarity=0.137 Sum_probs=65.8
Q ss_pred eEEEEecCCCeEEEEEecCCCceeccceeeeCCCC-ChhhHHHHHHHHHHhh--CCCEEEEecccC-CCCC-----chHH
Q 030251 27 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKN-TIDLMAEDFRSLISEF--NLEGFIVGYPFN-RQQN-----AADA 97 (180)
Q Consensus 27 ~iLalD~G~kriGvAvsd~~~~~a~Pl~~i~~~~~-~~~~~~~~L~~li~e~--~i~~iVVGlP~~-dG~~-----s~~~ 97 (180)
.++|+|+|..+|=+++.|..+.+..- ..++.... +.+.+++.|.+.+++. ++.+|.||.|=. |... ++..
T Consensus 2 ~~lgidiggt~~~~~l~d~~g~il~~-~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~igi~~pG~vd~~~g~v~~~~~~ 80 (289)
T 2aa4_A 2 TTLAIDIGGTKLAAALIGADGQIRDR-RELPTPASQTPEALRDALSALVSPLQAHAQRVAIASTGIIRDGSLLALNPHNL 80 (289)
T ss_dssp CEEEEEECSSEEEEEEECTTCCEEEE-EEEECCSSCCHHHHHHHHHHHHTTTGGGCSEEEEEESSEEETTEEECSSGGGG
T ss_pred eEEEEEeCCCEEEEEEECCCCCEEEE-EEecCCCCCCHHHHHHHHHHHHHHHHhhCCEEEEEeccceeCCCCEEEeCCCC
Confidence 58999999999999999977654321 23333221 2456678888888764 467899999854 3221 1110
Q ss_pred H--HHHHHHHHHHhccCCCCCcEEEecccccHHHHHHHh
Q 030251 98 V--QVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLL 134 (180)
Q Consensus 98 ~--~v~~F~~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l 134 (180)
. .-..+.+.|++. + ++||.+.+.-.....|+..+
T Consensus 81 ~~w~~~~l~~~l~~~--~-~~pv~v~NDa~aaa~~e~~~ 116 (289)
T 2aa4_A 81 GGLLHFPLVKTLEQL--T-NLPTIAINDAQAAAWAEFQA 116 (289)
T ss_dssp GGGTTCCHHHHHHHH--H-CSCEEEEEHHHHHHHHHHHT
T ss_pred CcccCCChHHHHHHH--H-CCCEEEechHHHHHHHHHHh
Confidence 0 001356667764 4 68998888776666665543
No 22
>3lm2_A Putative kinase; structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-2, transf; HET: MSE; 1.70A {Agrobacterium tumefaciens}
Probab=92.52 E-value=0.27 Score=39.82 Aligned_cols=61 Identities=15% Similarity=0.190 Sum_probs=43.2
Q ss_pred CCCeEEEEecCCCeEEEEEecCCCceeccceeeeCC-CCChhhHHHHHHHHHHhhCCCEEEEecccC
Q 030251 24 KRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRK-KNTIDLMAEDFRSLISEFNLEGFIVGYPFN 89 (180)
Q Consensus 24 ~~~~iLalD~G~kriGvAvsd~~~~~a~Pl~~i~~~-~~~~~~~~~~L~~li~e~~i~~iVVGlP~~ 89 (180)
..+.++|+|+|..+|=+ .|..+.+ ...++.. ..+.+.+.+.+.++++++++.+|-||.|=-
T Consensus 4 ~~~~~lgiDIGGT~i~~--~d~~g~~---~~~~~t~~~~~~~~~~~~i~~~i~~~~i~gigi~~pG~ 65 (226)
T 3lm2_A 4 EDQTVLAIDIGGSHVKI--GLSTDGE---ERKVESGKTMTGPEMVAAVTAMAKDMTYDVIAMGYPGP 65 (226)
T ss_dssp GGCCEEEEEECSSEEEE--EETTTCC---EEEEECCTTCCHHHHHHHHHHHTTTCCCSEEEEEESSC
T ss_pred cCCEEEEEEECCCEEEE--EECCCCE---EEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEeE
Confidence 34679999999999874 4554443 1233322 223456788899999988999999999855
No 23
>2ap1_A Putative regulator protein; zinc binding protein, structural genomics, PSI, protein STRU initiative; 1.90A {Salmonella typhimurium} SCOP: c.55.1.10 c.55.1.10
Probab=92.36 E-value=0.5 Score=39.17 Aligned_cols=104 Identities=18% Similarity=0.172 Sum_probs=64.8
Q ss_pred CCeEEEEecCCCeEEEEEecCCCceeccceeeeCCCCChhhHHHHHHHHHHhh-----CCCEEEEecccC-C---CCCc-
Q 030251 25 RGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEF-----NLEGFIVGYPFN-R---QQNA- 94 (180)
Q Consensus 25 ~~~iLalD~G~kriGvAvsd~~~~~a~Pl~~i~~~~~~~~~~~~~L~~li~e~-----~i~~iVVGlP~~-d---G~~s- 94 (180)
.+.+||+|+|..+|=+++.|..+.+..- ..++......+.+++.|.+++++. .+.+|.||.|=- | |...
T Consensus 23 ~~~~lgiDiGgt~i~~~l~d~~g~il~~-~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~i~~igi~~pG~vd~~~g~v~~ 101 (327)
T 2ap1_A 23 NAMYYGFDIGGTKIALGVFDSTRRLQWE-KRVPTPHTSYSAFLDAVCELVEEADQRFGVKGSVGIGIPGMPETEDGTLYA 101 (327)
T ss_dssp CCEEEEEEECSSEEEEEEEETTCCEEEE-EEEECCCSCHHHHHHHHHHHHHHHHHHHTSCCEEEEEESSBSCCTTSCCBC
T ss_pred CceEEEEEECCCEEEEEEEeCCCCEEEE-EEecCCCCCHHHHHHHHHHHHHHHHHhcCCccEEEEEeeeeEECCCCEEEc
Confidence 4679999999999999999987654321 233332223345567777776643 378899999844 3 3221
Q ss_pred ---hHHHHHHHHHHHHHhccCCCCCcEEEecccccHHHHHHH
Q 030251 95 ---ADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELL 133 (180)
Q Consensus 95 ---~~~~~v~~F~~~L~~~~~~~~lpV~~~DEr~TT~~A~~~ 133 (180)
+.... ..+.+.|++. + ++||.+.+.-....-|+..
T Consensus 102 ~~~~~~~~-~~l~~~l~~~--~-~~pv~v~NDa~aaalgE~~ 139 (327)
T 2ap1_A 102 ANVPAASG-KPLRADLSAR--L-DRDVRLDNDANCFALSEAW 139 (327)
T ss_dssp TTCTTTTT-SCHHHHHHHH--H-TSCEEEEEHHHHHHHHHHT
T ss_pred cCCCccCC-CChHHHHHHH--H-CCCEEEecHHHHHHHHHHH
Confidence 11110 1345566663 4 6898888877766666543
No 24
>2qm1_A Glucokinase; alpha-beta structure, putative helix-turn-helix, structural PSI-2, protein structure initiative; HET: MSE; 2.02A {Enterococcus faecalis}
Probab=92.31 E-value=0.33 Score=39.98 Aligned_cols=105 Identities=12% Similarity=0.149 Sum_probs=61.9
Q ss_pred CeEEEEecCCCeEEEEEecCCCceeccceeeeCCC-CChhhHHHHHHHHHH----hh-----CCCEEEEecccC-C---C
Q 030251 26 GRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKK-NTIDLMAEDFRSLIS----EF-----NLEGFIVGYPFN-R---Q 91 (180)
Q Consensus 26 ~~iLalD~G~kriGvAvsd~~~~~a~Pl~~i~~~~-~~~~~~~~~L~~li~----e~-----~i~~iVVGlP~~-d---G 91 (180)
..+||||+|..+|=+++.|..+.+..- ..++... .+.+.+++.|.+.++ +. ++.+|.||.|=. | |
T Consensus 6 ~~~lgiDiggt~~~~~l~d~~g~il~~-~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~i~~igi~~pG~vd~~~g 84 (326)
T 2qm1_A 6 KKIIGIDLGGTTIKFAILTTDGVVQQK-WSIETNILEDGKHIVPSIIESIRHRIDLYNMKKEDFVGIGMGTPGSVDIEKG 84 (326)
T ss_dssp CEEEEEEECSSEEEEEEEETTCCEEEE-EEEECCCTTTTTTHHHHHHHHHHHHHHHTTCCGGGEEEEEEEESSEEETTTT
T ss_pred cEEEEEEECCCEEEEEEECCCCCEEEE-EEEcCCCCCCHHHHHHHHHHHHHHHHHHcCCCccceeEEEEecccceeCCCC
Confidence 578999999999999999987654321 2333221 122334555555444 33 467888999853 3 3
Q ss_pred CC--chHHH-HHH-HHHHHHHhccCCCCCcEEEecccccHHHHHHHh
Q 030251 92 QN--AADAV-QVK-LFIDDLSATKKLEDMKYAYWNEGFTSKGVELLL 134 (180)
Q Consensus 92 ~~--s~~~~-~v~-~F~~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l 134 (180)
.. ++.-. .-. .+.+.|++. + ++||++.+.--....|+..+
T Consensus 85 ~v~~~~~l~w~~~~~l~~~l~~~--~-~~pv~v~ND~~aaa~~e~~~ 128 (326)
T 2qm1_A 85 TVVGAYNLNWTTVQPVKEQIESA--L-GIPFALDNDANVAALGERWK 128 (326)
T ss_dssp EEECBGGGTBCSCBCHHHHHHHH--H-CSCEEEEEHHHHHHHHHHHH
T ss_pred EEEecCCCCccCCchHHHHHHHH--h-CCCEEEecHHHHHHHHHHHh
Confidence 21 11100 001 345667763 4 68999988777666666543
No 25
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=92.27 E-value=0.49 Score=40.36 Aligned_cols=106 Identities=12% Similarity=0.034 Sum_probs=64.5
Q ss_pred CCCeEEEEecCCCeEEEEEecCCCceeccceeeeCCCC-ChhhHHHHHHHHHHh---------hCCCEEEEecccC-C--
Q 030251 24 KRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKN-TIDLMAEDFRSLISE---------FNLEGFIVGYPFN-R-- 90 (180)
Q Consensus 24 ~~~~iLalD~G~kriGvAvsd~~~~~a~Pl~~i~~~~~-~~~~~~~~L~~li~e---------~~i~~iVVGlP~~-d-- 90 (180)
..+.++|+|+|..+|=+++.|..+.+..- ..++.... +.+.+++.+.+.+++ .++.+|.||.|=- |
T Consensus 85 ~~~~~lGIDiGgt~i~~~l~d~~G~vl~~-~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~i~gigi~~pG~vd~~ 163 (380)
T 2hoe_A 85 NCAYVLGIEVTRDEIAACLIDASMNILAH-EAHPLPSQSDREETLNVMYRIIDRAKDMMEKLGSKLSALTVAAPGPIDTE 163 (380)
T ss_dssp GGCEEEEEEECSSEEEEEEEETTCCEEEE-EEEECCSSCCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEEESSCEETT
T ss_pred CCCeEEEEEECCCEEEEEEECCCCCEEEE-EEEccCCCCCHHHHHHHHHHHHHHHHHhcCCCcCcEEEEEEEeeccEECC
Confidence 44789999999999999999987654331 23332221 333445555554433 3688999999865 3
Q ss_pred -CCCc--hH--HHHHHHHHHHHHhccCCCCCcEEEecccccHHHHHHHh
Q 030251 91 -QQNA--AD--AVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLL 134 (180)
Q Consensus 91 -G~~s--~~--~~~v~~F~~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l 134 (180)
|... +. ... ..+.+.|++. + ++||++.+.--...-|+..+
T Consensus 164 ~g~v~~~~~l~w~~-~~l~~~l~~~--~-~~pV~v~NDanaaalaE~~~ 208 (380)
T 2hoe_A 164 RGIIIDPRNFPLSQ-IPLANLLKEK--Y-GIEVWVENDADMGAVGEKWY 208 (380)
T ss_dssp TTEECCCSSCTTBT-SCHHHHHHHH--H-CSEEEEEEHHHHHHHHHHHH
T ss_pred CCEEeccCCCCCcC-CChHHHHHHH--h-CCCEEEechHHHHHHHHHHh
Confidence 3210 00 000 1355667763 4 78999888876666665543
No 26
>4db3_A Glcnac kinase, N-acetyl-D-glucosamine kinase; structural genomics, center for structural genomics of infec diseases, csgid, transferase; 1.95A {Vibrio vulnificus}
Probab=92.26 E-value=0.67 Score=38.75 Aligned_cols=104 Identities=16% Similarity=0.144 Sum_probs=65.4
Q ss_pred CeEEEEecCCCeEEEEEecCCCceeccceeeeCCCCChhhHHHHHHHHHHhh-----CCCEEEEecccC-C---CCCch-
Q 030251 26 GRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEF-----NLEGFIVGYPFN-R---QQNAA- 95 (180)
Q Consensus 26 ~~iLalD~G~kriGvAvsd~~~~~a~Pl~~i~~~~~~~~~~~~~L~~li~e~-----~i~~iVVGlP~~-d---G~~s~- 95 (180)
+.++|+|+|..+|=+++.|..+.+..- ..++....+.+.+++.|.+++++. .+.+|.||.|=- | |....
T Consensus 24 ~~~lgiDiGgt~i~~~l~d~~G~il~~-~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~gigi~~pG~vd~~~g~v~~~ 102 (327)
T 4db3_A 24 AMYYGFDVGGTKIEFGAFNEKLERVAT-ERVPTPTDDYPLLLETIAGLVAKYDQEFACEGKIGLGLPGMEDADDATVLTV 102 (327)
T ss_dssp CCEEEEEECSSEEEEEEECTTCCEEEE-EEEECCTTCHHHHHHHHHHHHHHHHHHHTSCCEEEEEESEEECTTTCCEEES
T ss_pred cEEEEEEECCCEEEEEEEeCCCcEEEE-EEecCCCCCHHHHHHHHHHHHHHHHHhcCCccEEEEEeeccEeCCCCEEEcC
Confidence 378999999999999999987755432 334443334445667777666542 467899999844 3 32110
Q ss_pred ---HHHHHHHHHHHHHhccCCCCCcEEEecccccHHHHHHHh
Q 030251 96 ---DAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLL 134 (180)
Q Consensus 96 ---~~~~v~~F~~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l 134 (180)
.... ..+.+.|++. + ++||++.+.-....-|+..+
T Consensus 103 ~~~~~~~-~~l~~~l~~~--~-~~pV~v~NDa~aaalgE~~~ 140 (327)
T 4db3_A 103 NVPAAKG-KPLRADLEAK--I-GRSVKIENDANCFALSEAWD 140 (327)
T ss_dssp SSGGGTT-SCHHHHHHHH--H-SSCCEEEEHHHHHHHHHHTS
T ss_pred CCccccC-CCHHHHHHHH--H-CCCEEEecchhHHHHHHHHh
Confidence 0000 1345667764 4 78988888776666665543
No 27
>2a6a_A Hypothetical protein TM0874; glycoprotein endopeptidase, structural genomics, JOI for structural genomics, JCSG; 2.50A {Thermotoga maritima} SCOP: c.55.1.9 c.55.1.9
Probab=92.19 E-value=2.3 Score=34.14 Aligned_cols=94 Identities=11% Similarity=0.035 Sum_probs=61.7
Q ss_pred CeEEEEecCCCeEEEEEecCCCceeccceeeeCCCCChhhHHHHHHHHHHhh-----CCCEEEEecccCCCCCchH-HHH
Q 030251 26 GRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEF-----NLEGFIVGYPFNRQQNAAD-AVQ 99 (180)
Q Consensus 26 ~~iLalD~G~kriGvAvsd~~~~~a~Pl~~i~~~~~~~~~~~~~L~~li~e~-----~i~~iVVGlP~~dG~~s~~-~~~ 99 (180)
-+|||||--+..++||+.+....+ + ..........+.+...|.+++.+. +++.|+|| .|=-+-. .+.
T Consensus 12 ~~iLaidTS~~~~sval~~~~~~l-~--~~~~~~r~Hse~L~p~i~~~L~~a~~~~~dld~Iav~----~GPGsfTGlRi 84 (218)
T 2a6a_A 12 HMNVLALDTSQRIRIGLRKGEDLF-E--ISYTGEKKHAEILPVVVKKLLDELDLKVKDLDVVGVG----IGPGGLTGLRV 84 (218)
T ss_dssp -CEEEEEECSSSEEEEEEETTEEE-E--EEEESCGGGGGHHHHHHHHHHHHHTCCGGGCSEEEEE----CCSSCHHHHHH
T ss_pred ceEEEEEcCCcCeEEEEEECCEEE-E--EEecchHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEE----cCCCchHhHHH
Confidence 579999999999999999865433 2 122222222334567777877763 57999999 5533333 344
Q ss_pred HHHHHHHHHhccCCCCCcEEEecccccHHHHHHH
Q 030251 100 VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELL 133 (180)
Q Consensus 100 v~~F~~~L~~~~~~~~lpV~~~DEr~TT~~A~~~ 133 (180)
.-.+|+-|... + ++|++-+ ||.+|...
T Consensus 85 G~~~Ak~La~~--~-~iPl~gV----s~l~a~a~ 111 (218)
T 2a6a_A 85 GIATVVGLVSP--Y-DIPVAPL----NSFEMTAK 111 (218)
T ss_dssp HHHHHHHHHGG--G-TCCEEEE----CHHHHHHH
T ss_pred HHHHHHHHHHH--c-CCCEEEe----CcHHHHHh
Confidence 47899999864 3 7888865 56666543
No 28
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=91.71 E-value=0.46 Score=40.76 Aligned_cols=106 Identities=11% Similarity=0.006 Sum_probs=63.8
Q ss_pred CCCCeEEEEecCCCeEEEEEecCCCceeccceeeeCCCCChhhHHHHHHHHHHh---------hCCCEEEEecccC-C--
Q 030251 23 SKRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISE---------FNLEGFIVGYPFN-R-- 90 (180)
Q Consensus 23 ~~~~~iLalD~G~kriGvAvsd~~~~~a~Pl~~i~~~~~~~~~~~~~L~~li~e---------~~i~~iVVGlP~~-d-- 90 (180)
+..+.++|+|+|..+|=+++.|..+.+..- ..++....+.+.+++.+.+.+++ .++.+|.||.|=. |
T Consensus 82 ~~~~~~lgiDiG~t~i~~~l~d~~G~il~~-~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~i~gigi~~pG~vd~~ 160 (406)
T 1z6r_A 82 TEAWHYLSLRISRGEIFLALRDLSSKLVVE-ESQELALKDDLPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTE 160 (406)
T ss_dssp CTTCEEEEEEEETTEEEEEEEETTCCEEEE-EEEECCSSCSSCHHHHHHHHHHHHHHHTGGGCCCEEEEEEEESSEEETT
T ss_pred CCccEEEEEEEcCCEEEEEEEcCCCCEEEE-EEecCCCCCHHHHHHHHHHHHHHHHHhcCCCcCceeEEEEEeecCEeCC
Confidence 345789999999999999999987654321 22222222223345555554443 2477888999854 3
Q ss_pred -CCCc------hHHHHHHHHHHHHHhccCCCCCcEEEecccccHHHHHHHh
Q 030251 91 -QQNA------ADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLL 134 (180)
Q Consensus 91 -G~~s------~~~~~v~~F~~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l 134 (180)
|... .+. . ..+.+.|++. + ++||++.+.--....|+..+
T Consensus 161 ~g~v~~~~~l~~w~-~-~~l~~~l~~~--~-~~pv~v~NDa~aaalaE~~~ 206 (406)
T 1z6r_A 161 NGIVHRMPFYEDVK-E-MPLGEALEQH--T-GVPVYIQHDISAWTMAEALF 206 (406)
T ss_dssp TTEEEECTTCTTCS-S-BCHHHHHHHH--H-SSCEEEEEHHHHHHHHHHHH
T ss_pred CCEEecCCCCCCcc-C-CCHHHHHHHH--H-CCCEEEechhHHHHHHHHHh
Confidence 3111 111 0 1355667663 4 78999988776666666544
No 29
>3r8e_A Hypothetical sugar kinase; ribonuclease H-like motif, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.65A {Cytophaga hutchinsonii}
Probab=91.62 E-value=0.3 Score=40.66 Aligned_cols=107 Identities=17% Similarity=0.238 Sum_probs=65.7
Q ss_pred CCCeEEEEecCCCeEEEEEecCCCceeccceeeeCC-CCChhhHHHHHHHHHHh-----hCCCEEEEecccC-C---CCC
Q 030251 24 KRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRK-KNTIDLMAEDFRSLISE-----FNLEGFIVGYPFN-R---QQN 93 (180)
Q Consensus 24 ~~~~iLalD~G~kriGvAvsd~~~~~a~Pl~~i~~~-~~~~~~~~~~L~~li~e-----~~i~~iVVGlP~~-d---G~~ 93 (180)
....+||+|+|..+|=+++.|..+.+..- ..++.. ..+.+.+++.+.+.+++ .++.+|.||.|=- | |..
T Consensus 17 ~~~~~lgidiggt~i~~~l~d~~g~il~~-~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~i~gigi~~pG~vd~~~g~v 95 (321)
T 3r8e_A 17 FQGMILGIDVGGTSVKFGLVTPEGEIQNA-TRFMTADWVNGIGFVESMKLEIGNFLKQYPIVKGVGIGWPGLVSLDRTKV 95 (321)
T ss_dssp --CCEEEEECCSSEEEEEEECTTCCEEEE-EEEEHHHHHTTTCHHHHHHHHHHHHHHHCTTCCEEEEEESSEECTTSCCE
T ss_pred cCcEEEEEEECCCEEEEEEEcCCCcEEEE-EEEeCCCCCCHHHHHHHHHHHHHHHHhccCCeeEEEEEecccEECCCCEE
Confidence 35789999999999999999987655432 233322 11223345666655544 5799999999844 3 321
Q ss_pred c--hH---HHHHHHHHHHHHhccCCCCCcEEEecccccHHHHHHHh
Q 030251 94 A--AD---AVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLL 134 (180)
Q Consensus 94 s--~~---~~~v~~F~~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l 134 (180)
. +. ... ..+.+.|++. ++++||++.+.--...-|+..+
T Consensus 96 ~~~~~l~~w~~-~~l~~~l~~~--~~~~pV~v~NDa~aaalaE~~~ 138 (321)
T 3r8e_A 96 ILLPNIPSVVN-VPIVEILRSE--FPHIHFKIENDAKCAALGEYYF 138 (321)
T ss_dssp EEBTTBCCCCS-CCHHHHHHHH--CTTSEEEEEEHHHHHHHHHHHH
T ss_pred EeCCCCccccC-CCHHHHHHHH--cCCCCEEEEchHHHHHHHHHHh
Confidence 1 00 000 2455667763 5478999988876666666554
No 30
>1woq_A Inorganic polyphosphate/ATP-glucomannokinase; transferase; HET: BGC; 1.80A {Arthrobacter SP} SCOP: c.55.1.10 c.55.1.10
Probab=91.47 E-value=0.79 Score=36.98 Aligned_cols=107 Identities=19% Similarity=0.111 Sum_probs=64.0
Q ss_pred CCCeEEEEecCCCeEEEEEecCC-CceeccceeeeCC-CCChhhHHHHHHHHHHhh--------CCCEEEEecccC-C-C
Q 030251 24 KRGRFLGLDVGDKYVGLSISDPK-NKIASPLSVLLRK-KNTIDLMAEDFRSLISEF--------NLEGFIVGYPFN-R-Q 91 (180)
Q Consensus 24 ~~~~iLalD~G~kriGvAvsd~~-~~~a~Pl~~i~~~-~~~~~~~~~~L~~li~e~--------~i~~iVVGlP~~-d-G 91 (180)
..+.++|+|+|..+|=+++.|.. +.+..-...++.. ..+.+.+++.|.+++++. .+.+|.||.|=. + |
T Consensus 10 ~~~~~lgidiggt~i~~~l~dl~~g~i~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~igi~~pG~v~~g 89 (267)
T 1woq_A 10 KNAPLIGIDIGGTGIKGGIVDLKKGKLLGERFRVPTPQPATPESVAEAVALVVAELSARPEAPAAGSPVGVTFPGIIQHG 89 (267)
T ss_dssp -CCCEEEEEECSSEEEEEEEETTTTEEEEEEEEEECCSSCCHHHHHHHHHHHHHHHHTSTTCCCTTCCEEEEESSCEETT
T ss_pred CCCEEEEEEECCCEEEEEEEECCCCeEEEEEEecCCCccCCHHHHHHHHHHHHHHHHHhccccCccceEEEEccceEcCC
Confidence 34679999999999999999965 4443211233322 123344456666666543 245799999855 3 3
Q ss_pred CCc--h----HHHHHHHHHHHHHhccCCCCCcEEEecccccHHHHHHHh
Q 030251 92 QNA--A----DAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLL 134 (180)
Q Consensus 92 ~~s--~----~~~~v~~F~~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l 134 (180)
... + .... ..+.+.|++. + ++||++.+.--...-|+..+
T Consensus 90 ~v~~~~~l~~~w~~-~~l~~~l~~~--~-~~pV~v~NDanaaalaE~~~ 134 (267)
T 1woq_A 90 VVHSAANVDKSWLN-TDIDALLTAR--L-GRPVEVINDADAAGLAEARY 134 (267)
T ss_dssp EECCCTTSCGGGTT-CBHHHHHHHH--H-TSCEEEEEHHHHHHHHHHHH
T ss_pred EEEeCCCCCCCCCC-CCHHHHHHHH--H-CCCEEEeehhHHHHHHHHHh
Confidence 211 1 0111 2455677764 4 78999888777766666554
No 31
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=90.92 E-value=0.52 Score=40.90 Aligned_cols=107 Identities=10% Similarity=0.074 Sum_probs=64.7
Q ss_pred CCCCeEEEEecCCCeEEEEEecCCCceeccceeeeCCCCChhhHHHHHHHHHHh----h-----CCCEEEEecccC-C--
Q 030251 23 SKRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISE----F-----NLEGFIVGYPFN-R-- 90 (180)
Q Consensus 23 ~~~~~iLalD~G~kriGvAvsd~~~~~a~Pl~~i~~~~~~~~~~~~~L~~li~e----~-----~i~~iVVGlP~~-d-- 90 (180)
+..+.++|+|+|..+|=+++.|..+.+..- ..++....+.+.+++.|.+.+++ . ++.+|.||.|=- |
T Consensus 105 ~~~~~~lGIDiGgt~i~~~l~d~~G~il~~-~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~i~gigi~~pG~vd~~ 183 (429)
T 1z05_A 105 NLGWQFLSMRLGRGYLTIALHELGGEVLID-TKIDIHEIDQDDVLARLLFEIEEFFQTYAAQLDRVTSIAITLPGLVNSE 183 (429)
T ss_dssp CTTEEEEEEEEETTEEEEEEEETTSCEEEE-EEEECCCCBHHHHHHHHHHHHHHHHHHTTTTCCEEEEEEEEESSEEETT
T ss_pred CCCCEEEEEEECCCEEEEEEECCCCCEEEE-EEEcCCCCCHHHHHHHHHHHHHHHHHhcCCCcCceEEEEEeccCcEeCC
Confidence 445789999999999999999987654331 23333222334455666555544 2 366788998854 3
Q ss_pred -CCCc--hH--HHHHHHHHHHHHhccCCCCCcEEEecccccHHHHHHHh
Q 030251 91 -QQNA--AD--AVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLL 134 (180)
Q Consensus 91 -G~~s--~~--~~~v~~F~~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l 134 (180)
|... +. ... ..+.+.|++. + ++||++.+.--...-|+..+
T Consensus 184 ~g~v~~~~~l~w~~-~~l~~~L~~~--~-~~pV~v~NDa~aaalaE~~~ 228 (429)
T 1z05_A 184 QGIVLQMPHYNVKN-LALGPEIYKA--T-GLPVFVANDTRAWALAEKLF 228 (429)
T ss_dssp TTEEEECSSSBCSS-BCHHHHHHHH--H-CSCEEEEEHHHHHHHHHHHH
T ss_pred CCeEeecCCCCCCC-CCHHHHHHHH--h-CCCEEEechhHHHHHHHHHh
Confidence 3211 00 000 1355667763 4 78999888877666666544
No 32
>3htv_A D-allose kinase, allokinase; NP_418508.1, structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; HET: MSE; 1.95A {Escherichia coli k-12}
Probab=90.53 E-value=0.24 Score=41.35 Aligned_cols=99 Identities=13% Similarity=0.215 Sum_probs=59.1
Q ss_pred CCCeEEEEecCCCeEEEEEecCCCceeccceeeeCCCCChhhHHHHHHHHHHh----h--CCCEEEEecccC-C---CCC
Q 030251 24 KRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISE----F--NLEGFIVGYPFN-R---QQN 93 (180)
Q Consensus 24 ~~~~iLalD~G~kriGvAvsd~~~~~a~Pl~~i~~~~~~~~~~~~~L~~li~e----~--~i~~iVVGlP~~-d---G~~ 93 (180)
..+.++|+|+|..+|=+++.|..+.+..- ..++..+...+.+++.+.+++++ + ++.+|-||.|=. | |..
T Consensus 5 ~~~~~lgiDiGgt~i~~~l~d~~G~il~~-~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~i~gigi~~pG~vd~~~g~v 83 (310)
T 3htv_A 5 QHNVVAGVDMGATHIRFCLRTAEGETLHC-EKKRTAEVIAPGLVSGIGEMIDEQLRRFNARCHGLVMGFPALVSKDKRTI 83 (310)
T ss_dssp CEEEEEEEEECSSEEEEEEEETTSCEEEE-EEEEHHHHHTTCHHHHHHHHHHHHHHHHTEEEEEEEEEESSCBCTTSSCB
T ss_pred CCCEEEEEEeCCCEEEEEEECCCCCEEEE-EEecCccccHHHHHHHHHHHHHHHHHhcCCCeeEEEEeccccEeCCCCEE
Confidence 44689999999999999999987755431 22222111112345555555543 3 458899999844 3 321
Q ss_pred --ch---HHH-HHHHHHHHHHhccCCCCCcEEEeccccc
Q 030251 94 --AA---DAV-QVKLFIDDLSATKKLEDMKYAYWNEGFT 126 (180)
Q Consensus 94 --s~---~~~-~v~~F~~~L~~~~~~~~lpV~~~DEr~T 126 (180)
++ +.. ....+.+.|++. + ++||++.+.-..
T Consensus 84 ~~~~~l~~~~~~~~~l~~~l~~~--~-~~pv~v~NDana 119 (310)
T 3htv_A 84 ISTPNLPLTAADLYDLADKLENT--L-NCPVEFSRDVNL 119 (310)
T ss_dssp CSCCSSSCCHHHHTTHHHHHHHH--H-TSCEEEEEHHHH
T ss_pred EeCCCCCCccccCccHHHHHHHH--h-CCCEEEeeHHHH
Confidence 11 111 112466778774 4 789888776554
No 33
>2ivn_A O-sialoglycoprotein endopeptidase; UP1 keops complex, Fe/Zn dependent nucleotide phosphatase, metalloprotease, hypothetical protein, zinc; HET: ANP; 1.65A {Pyrococcus abyssi} PDB: 2ivo_A 2ivp_A*
Probab=90.48 E-value=2.3 Score=35.75 Aligned_cols=93 Identities=17% Similarity=0.110 Sum_probs=55.1
Q ss_pred CeEEEEecCCCeEEEEEecCCCceeccceeeeCCCC--Ch--------hhHHHHHHHHHHh-----hCCCEEEEecccCC
Q 030251 26 GRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKN--TI--------DLMAEDFRSLISE-----FNLEGFIVGYPFNR 90 (180)
Q Consensus 26 ~~iLalD~G~kriGvAvsd~~~~~a~Pl~~i~~~~~--~~--------~~~~~~L~~li~e-----~~i~~iVVGlP~~d 90 (180)
|.+||||-+...+++|+.+....++.-.....+... .+ +.+...+++++++ .+++.|+++.= -
T Consensus 1 M~iLgIdts~~~~~val~~~g~i~~~~~~~~~~~~gg~~p~~~~~~h~~~l~~~i~~~L~~agi~~~did~Ia~~~G--P 78 (330)
T 2ivn_A 1 MLALGIEGTAHTLGIGIVSEDKVLANVFDTLTTEKGGIHPKEAAEHHARLMKPLLRKALSEAGVSLDDIDVIAFSQG--P 78 (330)
T ss_dssp CCEEEEECSSSEEEEEEECSSCEEEEEEEECCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHTCCTTTCCEEEEEEE--S
T ss_pred CEEEEEEccCCCeEEEEEECCEEEEEEEEEeecccCCcCchhhHHHHHHHHHHHHHHHHHHcCCCHHHCcEEEEECC--C
Confidence 469999999999999999866555432222111110 01 1223456666665 36889998510 3
Q ss_pred CCCchHHHHHHHHHHHHHhccCCCCCcEEEeccc
Q 030251 91 QQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEG 124 (180)
Q Consensus 91 G~~s~~~~~v~~F~~~L~~~~~~~~lpV~~~DEr 124 (180)
|..+.. +....|++.|... + ++|++.+++-
T Consensus 79 G~~~~l-rvg~~~ak~la~~--~-~~pl~~v~h~ 108 (330)
T 2ivn_A 79 GLGPAL-RVVATAARALAVK--Y-RKPIVGVNHC 108 (330)
T ss_dssp SCHHHH-HHHHHHHHHHHHH--T-TCCEEEEEHH
T ss_pred CchHHH-HHHHHHHHHHHHH--c-CCCEEeeCcH
Confidence 433321 2234688888763 3 7899888763
No 34
>1zc6_A Probable N-acetylglucosamine kinase; NESG, Q7NU07_chrvo, CVR23, struc genomics, PSI, protein structure initiative; 2.20A {Chromobacterium violaceum} SCOP: c.55.1.5 c.55.1.5
Probab=90.09 E-value=1.8 Score=35.42 Aligned_cols=91 Identities=11% Similarity=0.049 Sum_probs=53.0
Q ss_pred eEEEEecCCCeEEEEEecCCCceeccceee-eC-CCCChhhHHHHHHHHHHh----hC-----C--CEEEEecccC-CCC
Q 030251 27 RFLGLDVGDKYVGLSISDPKNKIASPLSVL-LR-KKNTIDLMAEDFRSLISE----FN-----L--EGFIVGYPFN-RQQ 92 (180)
Q Consensus 27 ~iLalD~G~kriGvAvsd~~~~~a~Pl~~i-~~-~~~~~~~~~~~L~~li~e----~~-----i--~~iVVGlP~~-dG~ 92 (180)
.+||+|.|..+|=+++.|..+.+..- ... .. ...+.+.+++.+.+.+++ .. + .++.||.|=- |..
T Consensus 12 ~~lGiDiGgT~i~~~l~d~~G~il~~-~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~i~~~~igig~pG~v~~~ 90 (305)
T 1zc6_A 12 YLIGVDGGGTGTRIRLHASDGTPLAM-AEGGASALSQGIAKSWQAVLSTLEAAFQQAGLPAAPASACAIGLGLSGVHNRQ 90 (305)
T ss_dssp EEEEEEECSSCEEEEEEETTCCEEEE-EEESCCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCCGGGEEEEEEESCCCTTS
T ss_pred EEEEEEcCccceEEEEEcCCCCEEEE-EeCCCCCcccCHHHHHHHHHHHHHHHHHhcCCChhhhccceEEEEecCCCchH
Confidence 69999999999999999977644321 111 11 111233445666555544 22 2 5788998855 432
Q ss_pred CchHHHHHHHHHHHHHhccCCC-CCcEEEecccccHHHH
Q 030251 93 NAADAVQVKLFIDDLSATKKLE-DMKYAYWNEGFTSKGV 130 (180)
Q Consensus 93 ~s~~~~~v~~F~~~L~~~~~~~-~lpV~~~DEr~TT~~A 130 (180)
.. . .|+. +++ ++||++.+.-.....+
T Consensus 91 ~~--~--------~l~~--~~~~~~pv~v~NDa~aaa~g 117 (305)
T 1zc6_A 91 WA--G--------EFES--QAPGFARLSLATDGYTTLLG 117 (305)
T ss_dssp HH--H--------HHHH--TCCCCSEEEEECHHHHHHHH
T ss_pred HH--H--------HHHH--hCCCCceEEEECCHHHHHHh
Confidence 21 1 1554 255 6898887765554444
No 35
>3eno_A Putative O-sialoglycoprotein endopeptidase; hydrolase, metal-binding, metalloprotease, protease, zinc, keops complex, ATPase, metal ION binding; 3.02A {Thermoplasma acidophilum}
Probab=89.82 E-value=1.8 Score=36.65 Aligned_cols=93 Identities=12% Similarity=0.036 Sum_probs=57.0
Q ss_pred CCCCeEEEEecCCCeEEEEEecCCCceeccceeeeCCC----------CChhhHHHHHHHHHHh-----hCCCEEEEecc
Q 030251 23 SKRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKK----------NTIDLMAEDFRSLISE-----FNLEGFIVGYP 87 (180)
Q Consensus 23 ~~~~~iLalD~G~kriGvAvsd~~~~~a~Pl~~i~~~~----------~~~~~~~~~L~~li~e-----~~i~~iVVGlP 87 (180)
+.+|.+||||--..-+++|+.+....++.-...+.++. .....+...|++++++ .+++.|+|+
T Consensus 3 ~~~M~iLgIdts~~~~svAl~~~~~i~~~~~~~~~~~~gGv~p~~a~~~H~~~l~~~i~~~L~~ag~~~~did~Iav~-- 80 (334)
T 3eno_A 3 MDPMIVLGLEGTAHTISCGIIDESRILAMESSMYRPKTGGIRPLDAAVHHSEVIDTVISRALEKAKISIHDIDLIGFS-- 80 (334)
T ss_dssp CCCCEEEEEECSSSEEEEEEEESSCCCEEEEEECCCSSCSCCHHHHHHHHHHHHHHHHHHHHHHHTCCGGGCCEEEEE--
T ss_pred ccCceEEEEECCCcCeEEEEEECCEEEEEEEEeeccccCCcCcchHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEE--
Confidence 45689999999999999999996655554222221100 0111234566666666 368999998
Q ss_pred cCCCCCchHH-HHHHHHHHHHHhccCCCCCcEEEec
Q 030251 88 FNRQQNAADA-VQVKLFIDDLSATKKLEDMKYAYWN 122 (180)
Q Consensus 88 ~~dG~~s~~~-~~v~~F~~~L~~~~~~~~lpV~~~D 122 (180)
.|--+-.. +....|++.|... + ++|++.++
T Consensus 81 --~gPG~~t~lrvg~~~ak~La~~--~-~~Pl~~v~ 111 (334)
T 3eno_A 81 --MGPGLAPSLRVTATAARTISVL--T-GKPIIGVN 111 (334)
T ss_dssp --CSSSCHHHHHHHHHHHHHHHHH--H-TCCCEEEC
T ss_pred --cCCCCcchHHHHHHHHHHHhhc--c-CCCeEEec
Confidence 43222222 2335777777753 3 67888875
No 36
>1sz2_A Glucokinase, glucose kinase; ATP-dependent, glucose binding, transferase; HET: MSE BGC; 2.20A {Escherichia coli} SCOP: c.55.1.7 PDB: 1q18_A*
Probab=89.57 E-value=1 Score=37.52 Aligned_cols=100 Identities=13% Similarity=0.065 Sum_probs=60.1
Q ss_pred CCCeEEEEecCCCeEEEEEecC-CCceeccceeeeCCCCChhhHHHHHHHHHHhh--CCCEEEEecccC-CCCCc-----
Q 030251 24 KRGRFLGLDVGDKYVGLSISDP-KNKIASPLSVLLRKKNTIDLMAEDFRSLISEF--NLEGFIVGYPFN-RQQNA----- 94 (180)
Q Consensus 24 ~~~~iLalD~G~kriGvAvsd~-~~~~a~Pl~~i~~~~~~~~~~~~~L~~li~e~--~i~~iVVGlP~~-dG~~s----- 94 (180)
++..++|+|+|..+|=+|+.|. .+.+.. ...++.... +.+.+.+.+++++. ++.+|.||.|=- |...-
T Consensus 12 ~~~~~lgiDiGGT~i~~~l~dl~~g~i~~-~~~~~~~~~--~~~~~~i~~~~~~~~~~i~gigi~~pG~vd~~~~~~~nl 88 (332)
T 1sz2_A 12 STKYALVGDVGGTNARLALCDIASGEISQ-AKTYSGLDY--PSLEAVIRVYLEEHKVEVKDGCIAIACPITGDWVAMTNH 88 (332)
T ss_dssp --CEEEEEEEETTEEEEEEEETTTCCEEE-EEEEEGGGC--SCHHHHHHHHHHHSCCCCCEEEEEESSCCCSSEECCSSS
T ss_pred CCCEEEEEEechhheEEEEEECCCCcEEE-EEEecCCCc--CCHHHHHHHHHHhcCCCccEEEEEEeCceeCCEEeeeCC
Confidence 4688999999999999999994 455443 233443221 23456777777764 588999999865 42210
Q ss_pred hHHHHHHHHHHHHHhccCCCCCc-EEEecccccHHHHHHH
Q 030251 95 ADAVQVKLFIDDLSATKKLEDMK-YAYWNEGFTSKGVELL 133 (180)
Q Consensus 95 ~~~~~v~~F~~~L~~~~~~~~lp-V~~~DEr~TT~~A~~~ 133 (180)
.+. + . .+.|++. + ++| |++.+.--...-|+..
T Consensus 89 ~w~--~-~-~~~l~~~--~-~~p~V~v~NDanaaalgE~~ 121 (332)
T 1sz2_A 89 TWA--F-S-IAEMKKN--L-GFSHLEIINDFTAVSMAIPM 121 (332)
T ss_dssp CCC--E-E-HHHHHHH--H-TCSEEEEEEHHHHHHHHGGG
T ss_pred CCc--C-C-HHHHHHH--h-CCCcEEEEeCHhHHhccccc
Confidence 111 1 1 2455553 4 677 8877766555555443
No 37
>2q2r_A Glucokinase 1, putative; ATPase hexose kinase family, transferase; HET: BGC ADP; 2.10A {Trypanosoma cruzi}
Probab=89.41 E-value=0.66 Score=39.37 Aligned_cols=101 Identities=13% Similarity=0.001 Sum_probs=58.0
Q ss_pred CCeEEEEecCCCeEEEEEecC----CCceeccceeeeCCCCChhhHHHHHHHHHHhh------CCCEEEEecccC-C-CC
Q 030251 25 RGRFLGLDVGDKYVGLSISDP----KNKIASPLSVLLRKKNTIDLMAEDFRSLISEF------NLEGFIVGYPFN-R-QQ 92 (180)
Q Consensus 25 ~~~iLalD~G~kriGvAvsd~----~~~~a~Pl~~i~~~~~~~~~~~~~L~~li~e~------~i~~iVVGlP~~-d-G~ 92 (180)
++.+||+|+|..+|=+++.|. .+.+..-....+. .+.+.+++.|.+++++. ++.+|.||.|=- | |.
T Consensus 28 ~~~~lgiDiGgt~i~~~l~d~~~~~~g~il~~~~~~~~--~~~~~~~~~i~~~i~~~~~~~~~~i~gigi~~pG~vd~g~ 105 (373)
T 2q2r_A 28 APLTFVGDVGGTSARMGFVREGKNDSVHACVTRYSMKR--KDITEIIEFFNEIIELMPASVMKRVKAGVINVPGPVTGGA 105 (373)
T ss_dssp SCEEEEEEECSSEEEEEEEEECGGGCEEEEEEEEECTT--CBGGGHHHHHHHHHHHSCHHHHTTEEEEEEEESSCEETTT
T ss_pred CCeEEEEEEccccEEEEEEecccCCCccEEEEeeecCC--CCHHHHHHHHHHHHHHHhhcccccccEEEEEeeccccCCE
Confidence 578999999999999999986 5543221111222 23345577888877653 477899999865 4 32
Q ss_pred Cch-H--HHHHHHHHHHHHhccCCCCC-cEEEecccccHHHH
Q 030251 93 NAA-D--AVQVKLFIDDLSATKKLEDM-KYAYWNEGFTSKGV 130 (180)
Q Consensus 93 ~s~-~--~~~v~~F~~~L~~~~~~~~l-pV~~~DEr~TT~~A 130 (180)
... . ....-.+.+.+++ .+ ++ ||++.+.--...-|
T Consensus 106 v~~~~~~~~~~~~l~~~l~~--~~-~~~pv~v~NDa~aaalg 144 (373)
T 2q2r_A 106 VGGPFNNLKGIARLSDYPKA--LF-PPGHSAILNDLEAGGFG 144 (373)
T ss_dssp EECCCSSSBSCEEGGGSCTT--TS-CTTSEEEEEHHHHHHHH
T ss_pred EeccCCCCCCcCCHHHHHHH--hc-CCCCEEEEccHhHHhcc
Confidence 210 0 0000022222332 23 56 88877766555444
No 38
>2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion; HET: ATP; 2.20A {Thermus thermophilus}
Probab=87.35 E-value=2.4 Score=35.48 Aligned_cols=64 Identities=16% Similarity=0.156 Sum_probs=41.2
Q ss_pred CCeEEEEecCCCeEEEEEecCCCceeccceeeeCCC--------CChhhHHHHHHHHHHhh--CCCEEEEeccc
Q 030251 25 RGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKK--------NTIDLMAEDFRSLISEF--NLEGFIVGYPF 88 (180)
Q Consensus 25 ~~~iLalD~G~kriGvAvsd~~~~~a~Pl~~i~~~~--------~~~~~~~~~L~~li~e~--~i~~iVVGlP~ 88 (180)
...++|||+|+..|-+++..........+...+... .+.+.+...|++++.+. ++..+++++|-
T Consensus 12 ~~~~vgiDiGt~~i~~~~~~~~~~~i~~~g~~~~ps~~~~~g~i~d~~~~~~~ik~~~~~~~~~~~~v~~~i~~ 85 (377)
T 2ych_A 12 RVEALGLEIGASALKLVEVSGNPPALKALASRPTPPGLLMEGMVAEPAALAQEIKELLLEARTRKRYVVTALSN 85 (377)
T ss_dssp CCCCEEEEECSSEEEEEEEETTTTEEEEEEEEECCTTSEETTEESCHHHHHHHHHHHHHHHTCCCCEEEEEECG
T ss_pred CCceEEEEeCCCeEEEEEEeCCceEEEEEEeEECCCCcccCCCcCCHHHHHHHHHHHHHHcCCCcceEEEEecC
Confidence 457899999999999998863321111122221111 23445678888888875 56788999875
No 39
>2yhw_A Bifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase; transferase, sialic acid, mannac, ROK family; HET: BM3 2PE; 1.64A {Homo sapiens} PDB: 2yhy_A* 2yi1_A* 3eo3_A
Probab=87.32 E-value=1.4 Score=36.78 Aligned_cols=105 Identities=15% Similarity=0.041 Sum_probs=63.1
Q ss_pred CCCeEEEEecCCCeEEEEEecCCCceeccceeeeCCCCChhhHHHHHHHHHHh---------hCCCEEEEecccC-C---
Q 030251 24 KRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISE---------FNLEGFIVGYPFN-R--- 90 (180)
Q Consensus 24 ~~~~iLalD~G~kriGvAvsd~~~~~a~Pl~~i~~~~~~~~~~~~~L~~li~e---------~~i~~iVVGlP~~-d--- 90 (180)
....+||+|+|..+|=+++.|..+.+..- ...+.. .+.+.+++.+.+.+++ .++.+|.||.|=. |
T Consensus 28 ~~~~~lgiDiGgt~i~~~l~d~~G~il~~-~~~~~~-~~~~~~~~~i~~~i~~~~~~~~~~~~~i~gigi~~pG~vd~~~ 105 (343)
T 2yhw_A 28 GTLSALAVDLGGTNLRVAIVSMKGEIVKK-YTQFNP-KTYEERINLILQMCVEAAAEAVKLNCRILGVGISTGGRVNPRE 105 (343)
T ss_dssp CEEEEEEEEECSSEEEEEEEETTSCEEEE-EEEECC-SSHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEESSEEETTT
T ss_pred CCcEEEEEEECCCEEEEEEECCCCcEEEE-EEEcCC-CCHHHHHHHHHHHHHHHHHhcccccCceEEEEEecccCEeCCC
Confidence 44789999999999999999987755432 233322 1233345555555533 2477889998854 3
Q ss_pred CCCc--hH----HHHHHHHHHHHHhccCCCCCcEEEecccccHHHHHHHh
Q 030251 91 QQNA--AD----AVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLL 134 (180)
Q Consensus 91 G~~s--~~----~~~v~~F~~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l 134 (180)
|... +. ... ..+.+.|++. + ++||++.+.-.....|+..+
T Consensus 106 g~v~~~~~~~~~w~~-~~l~~~l~~~--~-~~pv~v~NDa~aaal~E~~~ 151 (343)
T 2yhw_A 106 GIVLHSTKLIQEWNS-VDLRTPLSDT--L-HLPVWVDNDGNCAALAERKF 151 (343)
T ss_dssp TEEEECCTTSSSCSS-EECHHHHHHH--H-CSCEEEEEHHHHHHHHHHHT
T ss_pred CEEEeCCcCCCCCcC-CCHHHHHHHH--H-CCCEEEechhHHHHHHHHHh
Confidence 3211 00 000 1345566663 4 78999888777766666543
No 40
>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*
Probab=87.14 E-value=3.6 Score=36.77 Aligned_cols=99 Identities=10% Similarity=0.042 Sum_probs=56.8
Q ss_pred CCCCeEEEEecCCCeEEEEEecCCCc-eeccceeeeCC----------CCChhhHHHHHHHHHHh---hCCCEEEEeccc
Q 030251 23 SKRGRFLGLDVGDKYVGLSISDPKNK-IASPLSVLLRK----------KNTIDLMAEDFRSLISE---FNLEGFIVGYPF 88 (180)
Q Consensus 23 ~~~~~iLalD~G~kriGvAvsd~~~~-~a~Pl~~i~~~----------~~~~~~~~~~L~~li~e---~~i~~iVVGlP~ 88 (180)
|.++.+||||--...+++|+.+..+. ++.-......+ ......+..-+.+++++ .+++.|+|+
T Consensus 3 m~~m~iL~i~ts~~~~~~al~~~~~~~~~~~~~~~~~~~gg~~p~~a~~~h~~~l~~~i~~~l~~~~~~~id~ia~~--- 79 (540)
T 3en9_A 3 MDPMICLGLEGTAEKTGVGIVTSDGEVLFNKTIMYKPPKQGINPREAADHHAETFPKLIKEAFEVVDKNEIDLIAFS--- 79 (540)
T ss_dssp CCSCEEEEEECSSSEEEEEEEETTSCEEEEEEEECCCCCSSSSCCCHHHHHHHHHHHHHHHHHHHSCGGGCCEEEEE---
T ss_pred cccceEEEEEcCccceEEEEEECCCeEEEEEEEeecCCCCCCChHHHHHHHHHHHHHHHHHHHHhCCHhHCcEEEEe---
Confidence 34589999999999999999997733 33322222110 00111223344444444 479999988
Q ss_pred CCCCCchHH-HHHHHHHHHHHhccCCCCCcEEEecccccHHHHHH
Q 030251 89 NRQQNAADA-VQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVEL 132 (180)
Q Consensus 89 ~dG~~s~~~-~~v~~F~~~L~~~~~~~~lpV~~~DEr~TT~~A~~ 132 (180)
.|--.-.+ ...-.||+.|+.. + ++|++-++ +.+|+-
T Consensus 80 -~gPG~~~~l~vg~~~ak~la~~--~-~~p~~~v~----h~~aH~ 116 (540)
T 3en9_A 80 -QGPGLGPSLRVTATVARTLSLT--L-KKPIIGVN----HCIAHI 116 (540)
T ss_dssp -EESSCHHHHHHHHHHHHHHHHH--H-TCCEEEEE----HHHHHH
T ss_pred -cCCCchhhHHHHHHHHHHHHHH--h-CCCeeEec----cHHHHH
Confidence 33222222 2335677777763 3 67888774 455543
No 41
>1zbs_A Hypothetical protein PG1100; alpha-beta protein., structural genomics, PSI, protein struc initiative; 2.30A {Porphyromonas gingivalis} SCOP: c.55.1.5 c.55.1.5
Probab=86.92 E-value=1.1 Score=36.61 Aligned_cols=93 Identities=11% Similarity=0.025 Sum_probs=54.7
Q ss_pred EEEEecCCCeEEEEEecCCCceeccceeeeC-C--CCChhhHHHHHHHHHHh------hCCCEEEEecccCCCCCchHHH
Q 030251 28 FLGLDVGDKYVGLSISDPKNKIASPLSVLLR-K--KNTIDLMAEDFRSLISE------FNLEGFIVGYPFNRQQNAADAV 98 (180)
Q Consensus 28 iLalD~G~kriGvAvsd~~~~~a~Pl~~i~~-~--~~~~~~~~~~L~~li~e------~~i~~iVVGlP~~dG~~s~~~~ 98 (180)
++|||.|..+|=+++.| .+.+..- ...+. + ....+.+++.|.+.+++ .++..|.||.|=-. ....
T Consensus 2 ~lgiDiGGT~~~~~l~d-~g~il~~-~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~i~~igig~pG~~-~~~~--- 75 (291)
T 1zbs_A 2 ILIGDSGSTKTDWCIAK-EGKSLGR-FQTSGINPFQQDRNEIDTALRSEVLPAIGQKASSIRAVYFYGAGCT-PAKA--- 75 (291)
T ss_dssp EEEEEECSSEEEEEEEE-TTEEEEE-EEEECCCTTTSCHHHHHHHHTTTTHHHHTTSTTTCCEEEEEETTCC-TTTH---
T ss_pred EEEEEeCccceEEEEEe-CCeEEEE-EECCCCCcccCCHHHHHHHHHHHHHHHhCCCcccccEEEEECCCCC-hHHH---
Confidence 79999999999999999 6654321 12222 1 11334455666665543 35788999987432 1111
Q ss_pred HHHHHHHHHHhccCCCC-CcEEEecccccHHHH
Q 030251 99 QVKLFIDDLSATKKLED-MKYAYWNEGFTSKGV 130 (180)
Q Consensus 99 ~v~~F~~~L~~~~~~~~-lpV~~~DEr~TT~~A 130 (180)
..+.+.|++. ++. .||...+--.....+
T Consensus 76 --~~l~~~l~~~--~~~~~pv~v~NDa~~aa~g 104 (291)
T 1zbs_A 76 --PMLNEALDSM--LPHCDRIEVAGDMLGAARA 104 (291)
T ss_dssp --HHHHHHHHHH--STTCSEEEEECHHHHHHHH
T ss_pred --HHHHHHHHHh--cCCCCcEEEeCcHHHHHHh
Confidence 2566677763 421 588776655444333
No 42
>4ehu_A Activator of 2-hydroxyisocaproyl-COA dehydratase; actin fold, ATPase, electron transfer, ATP/ADP binding; HET: ANP; 1.60A {Clostridium difficile} PDB: 4eht_A* 4eia_A
Probab=85.13 E-value=2.5 Score=33.94 Aligned_cols=50 Identities=14% Similarity=0.088 Sum_probs=32.1
Q ss_pred CeEEEEecCCCeEEEEEecCCCceeccceeeeCCCCChhhHHHHHHHHHHhh
Q 030251 26 GRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEF 77 (180)
Q Consensus 26 ~~iLalD~G~kriGvAvsd~~~~~a~Pl~~i~~~~~~~~~~~~~L~~li~e~ 77 (180)
|.+||||.|+..|=+|+.|..+.+... .+.+.....+....-|+++.++.
T Consensus 1 M~~lGID~GsT~tk~av~d~~~~il~~--~~~~~g~~~e~a~~vl~~~~~~a 50 (276)
T 4ehu_A 1 MYTMGLDIGSTASKGVILKNGEDIVAS--ETISSGTGTTGPSRVLEKLYGKT 50 (276)
T ss_dssp CEEEEEEECSSCEEEEEEETTTEEEEE--EEESCCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEEcCccEEEEEEEECCCeEEEE--EEecCCCCHHHHHHHHHHHHHHC
Confidence 568999999999999999987765442 23333222233345566666654
No 43
>3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid}
Probab=83.27 E-value=11 Score=29.84 Aligned_cols=87 Identities=16% Similarity=0.214 Sum_probs=48.7
Q ss_pred cccccccchHHHHHHhhhccC---CCCeEEEEecCCCeEEEEEecCCCc-eecc---ceeeeCCC-CChhh---HHHHHH
Q 030251 3 LQMKYVKPLRLFEQMLKRKVS---KRGRFLGLDVGDKYVGLSISDPKNK-IASP---LSVLLRKK-NTIDL---MAEDFR 71 (180)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~---~~~~iLalD~G~kriGvAvsd~~~~-~a~P---l~~i~~~~-~~~~~---~~~~L~ 71 (180)
.+|++-+-+..|......+.+ ....++|||.|+..|=+++.|.... +... -..+...- .+.+. .+.++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gIDiGS~s~k~vi~~~~~~~l~~~~~~~~~l~~g~i~d~~~~~~~l~~~~ 81 (272)
T 3h1q_A 2 NAMELEQKLNLLNDLIVREIVNPLPPPYKVGVDLGTADIVLVVTDQEGIPVAGALKWASVVKDGLVVDYIGAIQIVRELK 81 (272)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCCCCCSCCEEEEECCSSEEEEEEECTTCCEEEEEEEECCCCBTTBCTTHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhcCCCCCCCCCEEEEEEcccceEEEEEECCCCcEEEEEeecccccCCCEEEcHHHHHHHHHHHH
Confidence 467776777777766654322 2246899999999999998876542 2211 11111100 01122 233333
Q ss_pred HHHHh---hCCCEEEEecccC
Q 030251 72 SLISE---FNLEGFIVGYPFN 89 (180)
Q Consensus 72 ~li~e---~~i~~iVVGlP~~ 89 (180)
+.... ..+..+|+..|..
T Consensus 82 ~~~~~~~~~~~~~~v~tvp~~ 102 (272)
T 3h1q_A 82 AKVERLLGSELFQAATAIPPG 102 (272)
T ss_dssp HHHHHHSSSCCCEEEEECCSC
T ss_pred HHHHHhcCCccCeEEEEcCCC
Confidence 33333 3567899999986
No 44
>3bex_A Type III pantothenate kinase; actin-like fold, ATP-binding, coenzyme A biosynthesis, cytoplasm, metal-binding, nucleotide-binding, potassium; HET: PAU; 1.51A {Thermotoga maritima} SCOP: c.55.1.13 c.55.1.13 PDB: 3bf1_A* 3bf3_A* 2gtd_A
Probab=82.07 E-value=4.5 Score=32.85 Aligned_cols=58 Identities=21% Similarity=0.255 Sum_probs=38.4
Q ss_pred CeEEEEecCCCeEEEEEecCCCceeccceeeeCCC-CChhhHHHHHHHHHHh--hCCCEEEEe
Q 030251 26 GRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKK-NTIDLMAEDFRSLISE--FNLEGFIVG 85 (180)
Q Consensus 26 ~~iLalD~G~kriGvAvsd~~~~~a~Pl~~i~~~~-~~~~~~~~~L~~li~e--~~i~~iVVG 85 (180)
+++|+||+|..+|=+|+-|......+ ..+++.. ...+.+...|..+++. +++++++|.
T Consensus 3 ~M~L~IDIGNT~ik~gl~~~~~l~~~--~r~~T~~~~t~de~~~~l~~l~~~~~~~i~~i~Is 63 (249)
T 3bex_A 3 PMYLLVDVGNTHSVFSITEDGKTFRR--WRLSTGVFQTEDELFSHLHPLLGDAMREIKGIGVA 63 (249)
T ss_dssp CEEEEEEECSSEEEEEEESSSSSCEE--EEEECCTTCCHHHHHHHHHHHHGGGGGGEEEEEEE
T ss_pred ceEEEEEECCCeEEEEEEECCEEEEE--EEecCCCCCCHHHHHHHHHHHHhhccccCCEEEEE
Confidence 46899999999999999986543332 2233221 2234556677777753 567888888
No 45
>3i8b_A Xylulose kinase; strain ATCC 15703 / DSM 20083, 11200J,, transferase, structural genomics, PSI-2; 2.00A {Bifidobacterium adolescentis ATCC15703}
Probab=82.02 E-value=4.6 Score=36.07 Aligned_cols=61 Identities=11% Similarity=0.170 Sum_probs=40.7
Q ss_pred CCCeEEEEecCCCeEEEEEec-CCCceeccceeeeC---CCCChhhHHHHHHHHHHhh----CCCEEEEe
Q 030251 24 KRGRFLGLDVGDKYVGLSISD-PKNKIASPLSVLLR---KKNTIDLMAEDFRSLISEF----NLEGFIVG 85 (180)
Q Consensus 24 ~~~~iLalD~G~kriGvAvsd-~~~~~a~Pl~~i~~---~~~~~~~~~~~L~~li~e~----~i~~iVVG 85 (180)
.+..+||||+|+..+=+++.| ..+.+..- ...+. .+.+++.+|+.+.+.+++- +|.+|-|+
T Consensus 3 ~~~~~lgIDiGtts~ka~l~d~~~G~i~~~-~~~~~~g~~e~d~~~~~~~i~~~l~~~~~~~~I~~Igis 71 (515)
T 3i8b_A 3 LRTLVAGVDTSTQSCKVRVTDAETGELVRF-GQAKHPNGTSVDPSYWWSAFQEAAEQAGGLDDVSALAVG 71 (515)
T ss_dssp CSCEEEEEEECSSEEEEEEEETTTCCEEEE-EEEECCSSSEECTHHHHHHHHHHHHHTTCSTTEEEEEEE
T ss_pred CCcEEEEEEeccccEEEEEEECCCCeEEEE-EEEeCCCCceECHHHHHHHHHHHHHhcCCccCceEEEEe
Confidence 356799999999999999999 66644321 12221 1234556789999999874 45555554
No 46
>3ll3_A Gluconate kinase; xylulose kinase, nysgx, ATP, ADP, xylulose, transferase, structural genomics, PSI-2, protein structure initiative; HET: ATP DXP XUL ADP; 2.00A {Lactobacillus acidophilus} PDB: 3gbt_A*
Probab=81.20 E-value=3.1 Score=36.91 Aligned_cols=52 Identities=17% Similarity=0.270 Sum_probs=33.4
Q ss_pred CCeEEEEecCCCeEEEEEecCCCceec----cceeeeCC----CCChhhHHHHHHHHHHh
Q 030251 25 RGRFLGLDVGDKYVGLSISDPKNKIAS----PLSVLLRK----KNTIDLMAEDFRSLISE 76 (180)
Q Consensus 25 ~~~iLalD~G~kriGvAvsd~~~~~a~----Pl~~i~~~----~~~~~~~~~~L~~li~e 76 (180)
|..+||||+|+..+=+++.|..+.+.. |+...... +.+++.+|+.+.+.+++
T Consensus 3 m~~~lgIDiGtts~K~~l~d~~G~il~~~~~~~~~~~p~~g~~e~dp~~~~~~~~~~i~~ 62 (504)
T 3ll3_A 3 LKYIIGMDVGTTATKGVLYDINGKAVASVSKGYPLIQTKVGQAEEDPKLIFDAVQEIIFD 62 (504)
T ss_dssp CEEEEEEEECSSEEEEEEEETTSCEEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHH
T ss_pred CCEEEEEEecCCceEEEEEcCCCCEEEEEEeecceecCCCCcEEECHHHHHHHHHHHHHH
Confidence 457999999999999999998765432 22211111 12445667777666654
No 47
>2h3g_X Biosynthetic protein; pantothenate kinase, anthrax, type III pantothenate kinase, COAX, COAA, askha; 2.00A {Bacillus anthracis str}
Probab=80.65 E-value=5.6 Score=32.73 Aligned_cols=57 Identities=19% Similarity=0.223 Sum_probs=38.3
Q ss_pred eEEEEecCCCeEEEEEecCCCceeccceeeeCCC-CChhhHHHHHHHHHHhh-----CCCEEEEe
Q 030251 27 RFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKK-NTIDLMAEDFRSLISEF-----NLEGFIVG 85 (180)
Q Consensus 27 ~iLalD~G~kriGvAvsd~~~~~a~Pl~~i~~~~-~~~~~~~~~L~~li~e~-----~i~~iVVG 85 (180)
++|+||+|..+|=+|+-|....... ..+.+.. ...+.+...|.++++.+ ++++++|-
T Consensus 1 MlL~IDIGNT~ik~gl~~~~~l~~~--~r~~T~~~~t~de~~~~l~~ll~~~~~~~~~i~~iiIS 63 (268)
T 2h3g_X 1 MIFVLDVGNTNAVLGVFEEGELRQH--WRMETDRHKTEDEYGMLVKQLLEHEGLSFEDVKGIIVS 63 (268)
T ss_dssp CEEEEEECSSEEEEEEEETTEEEEE--EEEECCTTCCHHHHHHHHHHHHHHTTCCGGGCCEEEEE
T ss_pred CEEEEEECcCcEEEEEEECCEEEEE--EEecCCCcCCHHHHHHHHHHHHHHcCCCcccCcEEEEE
Confidence 4799999999999999986543332 2223221 22345567778887765 47888887
No 48
>3ifr_A Carbohydrate kinase, FGGY; xylulose kinase, SGX, structural GENO 11200H, transferase, PSI-2; 2.30A {Rhodospirillum rubrum}
Probab=79.27 E-value=4.9 Score=35.70 Aligned_cols=64 Identities=14% Similarity=0.214 Sum_probs=38.5
Q ss_pred CCCeEEEEecCCCeEEEEEecCCCcee-c---cceeeeC----CCCChhhHHHHHHHHHHh---------hCCCEEEEec
Q 030251 24 KRGRFLGLDVGDKYVGLSISDPKNKIA-S---PLSVLLR----KKNTIDLMAEDFRSLISE---------FNLEGFIVGY 86 (180)
Q Consensus 24 ~~~~iLalD~G~kriGvAvsd~~~~~a-~---Pl~~i~~----~~~~~~~~~~~L~~li~e---------~~i~~iVVGl 86 (180)
.+..+||||+|+..+=+++.|..+.+. + |+..... .+.+++.+|+.+.+.+++ .+|.+|-|+-
T Consensus 5 ~~~~~lgIDiGtts~k~~l~d~~G~il~~~~~~~~~~~p~~g~~e~dp~~~~~~i~~~i~~~~~~~~~~~~~I~~Igis~ 84 (508)
T 3ifr_A 5 QGRQVIGLDIGTTSTIAILVRLPDTVVAVASRPTTLSSPHPGWAEEDPAQWWDNARAVLAELKTTAGESDWRPGGICVTG 84 (508)
T ss_dssp --CEEEEEEECSSEEEEEEEETTTEEEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHHHCGGGCCEEEEEEEE
T ss_pred cCCEEEEEEecCcceEEEEECCCCCEEEEEEEecceecCCCCceEECHHHHHHHHHHHHHHHHHhcCCChhheEEEEEEC
Confidence 356899999999999999999876543 2 2222111 112345556666555543 3566666665
Q ss_pred c
Q 030251 87 P 87 (180)
Q Consensus 87 P 87 (180)
|
T Consensus 85 ~ 85 (508)
T 3ifr_A 85 M 85 (508)
T ss_dssp C
T ss_pred C
Confidence 4
No 49
>1zxo_A Conserved hypothetical protein Q8A1P1; NESG, BTR25, structural genomics, PSI, protein structure initiative; 3.20A {Bacteroides thetaiotaomicron} SCOP: c.55.1.5 c.55.1.5
Probab=78.79 E-value=0.58 Score=38.35 Aligned_cols=91 Identities=7% Similarity=-0.027 Sum_probs=43.3
Q ss_pred EEEEecCCCeEEEEEecCCCceeccceeeeC--C-CCChhhHHHHHHHHH----HhhCCCEEEEecccCCCCCchHHHHH
Q 030251 28 FLGLDVGDKYVGLSISDPKNKIASPLSVLLR--K-KNTIDLMAEDFRSLI----SEFNLEGFIVGYPFNRQQNAADAVQV 100 (180)
Q Consensus 28 iLalD~G~kriGvAvsd~~~~~a~Pl~~i~~--~-~~~~~~~~~~L~~li----~e~~i~~iVVGlP~~dG~~s~~~~~v 100 (180)
++|||.|..+|=+++.| .+.+..- ...+. . ....+.+++.|.+.+ ...++..|.||.|=-. ....
T Consensus 2 ~lgiDiGGT~i~~~l~d-~g~il~~-~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~i~~igig~pG~~-~~~~----- 73 (291)
T 1zxo_A 2 ILIADSGSTKTDWCVVL-NGAVIKR-LGTKGINPFFQSEEEIQQKLTASLLPQLPEGKFNAVYFYGAGCT-PEKA----- 73 (291)
T ss_dssp --CEECCTTCEEEEEEC-SSSEEEE-EEECCCCTTTSCSTTTTTTTTC-------------CEEECTTCC-TTTT-----
T ss_pred EEEEEeccccEEEEEEc-CCeEEEE-EECCCCCcccCCHHHHHHHHHHHHHHhcCcccccEEEEEcCCCC-HHHH-----
Confidence 68999999999999999 6644321 11111 0 101122233333333 3356888999988432 1111
Q ss_pred HHHHHHHHhccCCCC-CcEEEecccccHH
Q 030251 101 KLFIDDLSATKKLED-MKYAYWNEGFTSK 128 (180)
Q Consensus 101 ~~F~~~L~~~~~~~~-lpV~~~DEr~TT~ 128 (180)
..+.+.|++. ++. .||...+--....
T Consensus 74 ~~l~~~l~~~--~~~~~pv~v~NDa~~aa 100 (291)
T 1zxo_A 74 PVLRRAIADS--LPVIGNIKANSDMLAAA 100 (291)
T ss_dssp HHHHHHHHHH--SCCCSCCEEECSHHHHH
T ss_pred HHHHHHHHHh--cCCCceEEEECcHHHHH
Confidence 2466667763 422 5887776544433
No 50
>2p3r_A Glycerol kinase; glycerol metabolism, allosteric regulation, microfluidics,; 2.00A {Escherichia coli} PDB: 3ezw_A 1gla_G 1bo5_O* 1bot_O 1glb_G* 1glc_G* 1gld_G* 1gle_G* 1glf_O* 1bu6_O 1bwf_Y* 1glj_Y* 1gll_Y*
Probab=78.51 E-value=5.7 Score=35.29 Aligned_cols=63 Identities=13% Similarity=0.099 Sum_probs=39.0
Q ss_pred CCeEEEEecCCCeEEEEEecCCCcee----ccceeeeCC----CCChhhHHHHHHHHHHh---------hCCCEEEEecc
Q 030251 25 RGRFLGLDVGDKYVGLSISDPKNKIA----SPLSVLLRK----KNTIDLMAEDFRSLISE---------FNLEGFIVGYP 87 (180)
Q Consensus 25 ~~~iLalD~G~kriGvAvsd~~~~~a----~Pl~~i~~~----~~~~~~~~~~L~~li~e---------~~i~~iVVGlP 87 (180)
+..+||||+|+..+=+++.|..+.+. .|+.+...+ ..+++.+|+.+.+.+++ .+|.+|-|+-|
T Consensus 2 ~~~~lgIDiGtts~k~~l~d~~G~il~~~~~~~~~~~p~~g~~e~dp~~~~~~~~~~i~~~~~~~~~~~~~I~~Igis~~ 81 (510)
T 2p3r_A 2 KKYIVALDQGTTSSRAVVMDHDANIISVSQREFEQIYPKPGWVEHDPMEIWATQSSTLVEVLAKADISSDQIAAIGITNQ 81 (510)
T ss_dssp CCEEEEEEECSSEEEEEEECTTCCEEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEEEEC
T ss_pred CcEEEEEEcCCcceEEEEECCCCCEEEEEEEecccccCCCCcEEECHHHHHHHHHHHHHHHHHHcCCChhheEEEEEeCC
Confidence 46799999999999999999887553 233222111 12345566666555443 34566666644
No 51
>2dpn_A Glycerol kinase; thermus thermophilus HB8, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=78.05 E-value=6.7 Score=34.53 Aligned_cols=62 Identities=13% Similarity=-0.006 Sum_probs=39.6
Q ss_pred CeEEEEecCCCeEEEEEecCCCcee----ccceeeeCC----CCChhhHHHHHHHHHHh---------hCCCEEEEecc
Q 030251 26 GRFLGLDVGDKYVGLSISDPKNKIA----SPLSVLLRK----KNTIDLMAEDFRSLISE---------FNLEGFIVGYP 87 (180)
Q Consensus 26 ~~iLalD~G~kriGvAvsd~~~~~a----~Pl~~i~~~----~~~~~~~~~~L~~li~e---------~~i~~iVVGlP 87 (180)
..+||||+|+..|=+++.|..+.+. .|....... ..+++.+|+.+.+.+++ .+|.+|-|+-|
T Consensus 2 ~~~lgiDiGtT~~k~~l~d~~g~i~~~~~~~~~~~~p~~g~~e~d~~~~~~~i~~~i~~~~~~~~~~~~~i~~Igis~~ 80 (495)
T 2dpn_A 2 AFLLALDQGTTSSRAILFTLEGRPVAVAKREFRQLYPKPGWVEHDPLEIWETTLWAAREVLRRAGAEAGEVLALGITNQ 80 (495)
T ss_dssp -CEEEEEECSSEEEEEEECTTSCEEEEEEEECCEECSSTTCCEECHHHHHHHHHHHHHHHHHHTTCCGGGCCEEEEEEC
T ss_pred cEEEEEeeCCcceEEEEECCCCCEEEEEEEeeceecCCCCcEeeCHHHHHHHHHHHHHHHHHhcCCCcccEEEEEEeCC
Confidence 4589999999999999999876543 222222111 12344556666666553 35888888866
No 52
>3g25_A Glycerol kinase; IDP00743, ATP-binding, glycerol metabolism, nucleotide-binding, transferase, struct genomics; HET: MSE; 1.90A {Staphylococcus aureus subsp} PDB: 3ge1_A*
Probab=76.26 E-value=6.8 Score=34.60 Aligned_cols=61 Identities=13% Similarity=0.199 Sum_probs=37.1
Q ss_pred CeEEEEecCCCeEEEEEecCCCceec----cceeeeCC----CCChhhHHHHHHHHHHh---------hCCCEEEEec
Q 030251 26 GRFLGLDVGDKYVGLSISDPKNKIAS----PLSVLLRK----KNTIDLMAEDFRSLISE---------FNLEGFIVGY 86 (180)
Q Consensus 26 ~~iLalD~G~kriGvAvsd~~~~~a~----Pl~~i~~~----~~~~~~~~~~L~~li~e---------~~i~~iVVGl 86 (180)
..+||||+|+..+=+++.|..+.+.. |+.+.... ..+++.+|+.+.+.+++ .+|.+|-|+-
T Consensus 6 ~~~lgIDiGtts~k~~l~d~~G~il~~~~~~~~~~~p~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~I~~Igis~ 83 (501)
T 3g25_A 6 KYILSIDQGTTSSRAILFNQKGEIAGVAQREFKQYFPQSGWVEHDANEIWTSVLAVMTEVINENDVRADQIAGIGITN 83 (501)
T ss_dssp CEEEEEEECSSEEEEEEECTTSCEEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHTTTCCGGGEEEEEEEE
T ss_pred cEEEEEEeCccceEEEEEcCCCCEEEEEEeecccccCCCCcEEECHHHHHHHHHHHHHHHHHhcCCCcccEEEEEEEC
Confidence 47999999999999999998875532 22211111 12344556666555443 2466666663
No 53
>3h6e_A Carbohydrate kinase, FGGY; novosphingobium aromaticivorans,strain 12444, SGX, transferase; 2.50A {Novosphingobium aromaticivorans}
Probab=75.67 E-value=8.4 Score=34.16 Aligned_cols=61 Identities=13% Similarity=0.116 Sum_probs=40.5
Q ss_pred CeEEEEecCCCeEEEEEecCCCcee----ccceeeeCC---CCChhhHHHHHHHHHHh---hCCCEEEEec
Q 030251 26 GRFLGLDVGDKYVGLSISDPKNKIA----SPLSVLLRK---KNTIDLMAEDFRSLISE---FNLEGFIVGY 86 (180)
Q Consensus 26 ~~iLalD~G~kriGvAvsd~~~~~a----~Pl~~i~~~---~~~~~~~~~~L~~li~e---~~i~~iVVGl 86 (180)
..+||||+|+..+=+++.|..+.+. .|....+.. +.+++.+|+.+.+.+++ .+|.+|-|+-
T Consensus 6 ~~~lgIDiGTts~Ka~l~d~~G~i~~~~~~~~~~~~~~g~~eqdp~~~~~~~~~~i~~~~~~~I~aIgis~ 76 (482)
T 3h6e_A 6 GATIVIDLGKTLSKVSLWDLDGRMLDRQVRPSIPLEIDGIRRLDAPDTGRWLLDVLSRYADHPVTTIVPVG 76 (482)
T ss_dssp --CEEEEECSSEEEEEEECTTSCEEEEEEEECCCEESSSCEECCHHHHHHHHHHHHHHTTTSCCCEEEEEE
T ss_pred ceEEEEEcCCCCeEEEEEECCCcEEEEEEecCCcccCCCceeECHHHHHHHHHHHHHHHHhcCCCEEEEec
Confidence 4689999999999999999776543 233322221 13456678888877776 4677777764
No 54
>3l0q_A Xylulose kinase; xlylulose kinase, SGX, PSI, structural genomics, protein structure initiative; HET: MSE XUL EPE; 1.61A {Yersinia pseudotuberculosis} PDB: 3gg4_A*
Probab=75.61 E-value=5.7 Score=35.62 Aligned_cols=52 Identities=13% Similarity=0.280 Sum_probs=32.6
Q ss_pred CCCeEEEEecCCCeEEEEEecCCCcee----ccceeeeCC----CCChhhHHHHHHHHHH
Q 030251 24 KRGRFLGLDVGDKYVGLSISDPKNKIA----SPLSVLLRK----KNTIDLMAEDFRSLIS 75 (180)
Q Consensus 24 ~~~~iLalD~G~kriGvAvsd~~~~~a----~Pl~~i~~~----~~~~~~~~~~L~~li~ 75 (180)
.+..+||||+|+..+=+++.|..+.+. .|+.+.... +.+++.+|+.+.+.++
T Consensus 3 ~~~~~lgIDiGtts~ka~l~d~~G~il~~~~~~~~~~~p~~g~~eqdp~~~~~~~~~~i~ 62 (554)
T 3l0q_A 3 LASYFIGVDVGTGSARAGVFDLQGRMVGQASREITMFKPKADFVEQSSENIWQAVCNAVR 62 (554)
T ss_dssp -CCEEEEEEECSSEEEEEEEETTSCEEEEEEEECCCEEEETTEEEECHHHHHHHHHHHHH
T ss_pred CCcEEEEEEECcccEEEEEECCCCCEEEEEEEecccccCCCCccccCHHHHHHHHHHHHH
Confidence 467899999999999999999876543 233222111 1244456666655544
No 55
>1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1
Probab=75.40 E-value=1.3 Score=37.22 Aligned_cols=21 Identities=29% Similarity=0.635 Sum_probs=17.7
Q ss_pred CeEEEEecCCCeEEEEEecCC
Q 030251 26 GRFLGLDVGDKYVGLSISDPK 46 (180)
Q Consensus 26 ~~iLalD~G~kriGvAvsd~~ 46 (180)
+.++|||+|+..+++|+.+..
T Consensus 2 ~~~vGIDlGTt~s~va~~~~g 22 (383)
T 1dkg_D 2 GKIIGIDLGTTNSCVAIMDGT 22 (383)
T ss_dssp -CCCEEECCSSEEEEEEEETT
T ss_pred CcEEEEEcCCCCEEEEEEECC
Confidence 468999999999999998643
No 56
>1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A*
Probab=74.99 E-value=1.8 Score=39.08 Aligned_cols=23 Identities=22% Similarity=0.531 Sum_probs=20.1
Q ss_pred CCCeEEEEecCCCeEEEEEecCC
Q 030251 24 KRGRFLGLDVGDKYVGLSISDPK 46 (180)
Q Consensus 24 ~~~~iLalD~G~kriGvAvsd~~ 46 (180)
.|+.++|||+|+..++||+.++.
T Consensus 2 ~m~~~iGIDlGTt~s~va~~~~g 24 (554)
T 1yuw_A 2 SKGPAVGIDLGTTYSCVGVFQHG 24 (554)
T ss_dssp CSCCCEEEEECSSEEEEEEECSS
T ss_pred CCCCEEEEEeCcccEEEEEEECC
Confidence 56789999999999999998753
No 57
>1hux_A Activator of (R)-2-hydroxyglutaryl-COA dehydratase; actin fold, metal binding protein; HET: ADP; 3.00A {Acidaminococcus fermentans} SCOP: c.55.1.5
Probab=74.29 E-value=13 Score=30.01 Aligned_cols=25 Identities=28% Similarity=0.259 Sum_probs=21.1
Q ss_pred CeEEEEecCCCeEEEEEecCCCcee
Q 030251 26 GRFLGLDVGDKYVGLSISDPKNKIA 50 (180)
Q Consensus 26 ~~iLalD~G~kriGvAvsd~~~~~a 50 (180)
+.+||||.|+..|-+++.|..+.+.
T Consensus 3 ~~~lGiD~Gst~~k~~l~d~~g~i~ 27 (270)
T 1hux_A 3 IYTLGIDVGSTASKCIILKDGKEIV 27 (270)
T ss_dssp CEEEEEEECSSEEEEEEEETTTEEE
T ss_pred cEEEEEEeccceEEEEEEeCCCCEE
Confidence 4689999999999999999865443
No 58
>2zf5_O Glycerol kinase; hyperthermophilic archaeon, ATP-binding, GL metabolism, nucleotide-binding, transferase; 2.40A {Thermococcus kodakarensis}
Probab=72.39 E-value=10 Score=33.42 Aligned_cols=62 Identities=15% Similarity=0.097 Sum_probs=37.8
Q ss_pred CeEEEEecCCCeEEEEEecCCCcee----ccceeeeCC----CCChhhHHHHHHHHHHh---------hCCCEEEEecc
Q 030251 26 GRFLGLDVGDKYVGLSISDPKNKIA----SPLSVLLRK----KNTIDLMAEDFRSLISE---------FNLEGFIVGYP 87 (180)
Q Consensus 26 ~~iLalD~G~kriGvAvsd~~~~~a----~Pl~~i~~~----~~~~~~~~~~L~~li~e---------~~i~~iVVGlP 87 (180)
..+||||+|+..+=+++.|..+.+. .|+...... ..+++.+|+.+.+.+++ .+|.+|-|+-|
T Consensus 3 ~~~lgiDiGtt~~k~~l~d~~g~~~~~~~~~~~~~~p~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~i~~Igis~~ 81 (497)
T 2zf5_O 3 KFVLSLDEGTTSARAIIFDRESNIHGIGQYEFPQHYPRPGWVEHNPEEIWDAQLRAIKDAIQSARIEPNQIAAIGVTNQ 81 (497)
T ss_dssp CEEEEEEECSSEEEEEEECTTCCEEEEEEEECCCBCCSTTCCEECHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEEEEC
T ss_pred cEEEEEecCCchhEEEEECCCCCEEEEEEeccceecCCCCcEEECHHHHHHHHHHHHHHHHHhcCCCcccEEEEEEecC
Confidence 4689999999999999999876542 222211111 12344556666665553 24666766654
No 59
>3hz6_A Xylulokinase; xylulose, structural genomic, chromob violaceum, manolate, transferase, structural genomi 2; HET: ADP XUL; 1.65A {Chromobacterium violaceum} PDB: 3kzb_A*
Probab=72.23 E-value=8 Score=34.31 Aligned_cols=52 Identities=12% Similarity=0.116 Sum_probs=33.1
Q ss_pred CCeEEEEecCCCeEEEEEecCCCcee-c---cceeeeCC----CCChhhHHHHHHHHHHh
Q 030251 25 RGRFLGLDVGDKYVGLSISDPKNKIA-S---PLSVLLRK----KNTIDLMAEDFRSLISE 76 (180)
Q Consensus 25 ~~~iLalD~G~kriGvAvsd~~~~~a-~---Pl~~i~~~----~~~~~~~~~~L~~li~e 76 (180)
|..+||||+|+..+=+++.|..+.+. + |+.+.... +.+++.+|+.+.+.+++
T Consensus 4 m~~~lgIDiGtts~k~~l~d~~G~il~~~~~~~~~~~p~~g~~e~dp~~~~~~~~~~i~~ 63 (511)
T 3hz6_A 4 AFYIATFDIGTTEVKAALADRDGGLHFQRSIALETYGDGNGPVEQDAGDWYDAVQRIASS 63 (511)
T ss_dssp CCEEEEEEECSSEEEEEEECTTSCEEEEEEEECCCBSTTSSCCEECHHHHHHHHHHHHHH
T ss_pred ccEEEEEEeCCCceEEEEECCCCCEEEEEEeecceecCCCCCEEECHHHHHHHHHHHHHH
Confidence 45799999999999999999876543 2 22211111 12445667766666654
No 60
>3h3n_X Glycerol kinase; ATP-binding, glycerol metabolism, nucleoti binding, phosphoprotein, transferase; 1.73A {Enterococcus casseliflavus} PDB: 3h3o_O 3flc_O 3h46_X 3h45_X 3d7e_O 1r59_O 1xup_O
Probab=71.16 E-value=9.3 Score=33.78 Aligned_cols=62 Identities=16% Similarity=0.218 Sum_probs=38.1
Q ss_pred CCeEEEEecCCCeEEEEEecCCCcee----ccceeeeCC----CCChhhHHHHHHHHHH----h-----hCCCEEEEec
Q 030251 25 RGRFLGLDVGDKYVGLSISDPKNKIA----SPLSVLLRK----KNTIDLMAEDFRSLIS----E-----FNLEGFIVGY 86 (180)
Q Consensus 25 ~~~iLalD~G~kriGvAvsd~~~~~a----~Pl~~i~~~----~~~~~~~~~~L~~li~----e-----~~i~~iVVGl 86 (180)
+..+||||+|+..+=+++.|..+.+. .|+.....+ +.+++.+|+.+.+.++ + .+|.+|-|+-
T Consensus 4 ~~~~lgIDiGtts~k~~l~d~~G~il~~~~~~~~~~~p~~g~~e~dp~~~~~~~~~~i~~~~~~~~~~~~~I~~Igis~ 82 (506)
T 3h3n_X 4 KNYVMAIDQGTTSSRAIIFDRNGKKIGSSQKEFPQYFPKSGWVEHNANEIWNSVQSVIAGAFIESGIRPEAIAGIGITN 82 (506)
T ss_dssp CCEEEEEEECSSEEEEEEEETTSCEEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEEEE
T ss_pred CCEEEEEEcCCCceEEEEECCCCCEEEEEEEecCccCCCCCcEEECHHHHHHHHHHHHHHHHHHcCCChhheEEEEeeC
Confidence 46799999999999999999876543 222222111 1234556666655543 3 2466666663
No 61
>2w40_A Glycerol kinase, putative; closed conformation, malaria, transferase, sugar kinase/HSP70/actin superfamily, open conformation; 1.49A {Plasmodium falciparum} PDB: 2w41_A*
Probab=71.03 E-value=8.5 Score=33.91 Aligned_cols=62 Identities=11% Similarity=0.060 Sum_probs=37.8
Q ss_pred CeEEEEecCCCeEEEEEecCCCcee----ccceeeeCC----CCChhhHHHHHHHHHHh-----------hCCCEEEEec
Q 030251 26 GRFLGLDVGDKYVGLSISDPKNKIA----SPLSVLLRK----KNTIDLMAEDFRSLISE-----------FNLEGFIVGY 86 (180)
Q Consensus 26 ~~iLalD~G~kriGvAvsd~~~~~a----~Pl~~i~~~----~~~~~~~~~~L~~li~e-----------~~i~~iVVGl 86 (180)
..+||||+|+..|=+++.|..+.+. .|....... ..+++.+|+.+.+.+++ .+|.+|-|+-
T Consensus 4 ~~~lgIDiGtT~~k~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~i~~~i~~~~~~~~~~~~~~~i~~Igis~ 83 (503)
T 2w40_A 4 NVILSIDQSTQSTKVFFYDEELNIVHSNNLNHEQKCLKPGWYEHDPIEIMTNLYNLMNEGIKVLKDKYTSVIIKCIGITN 83 (503)
T ss_dssp EEEEEEEECSSEEEEEEEETTCCEEEEEEEECCCBCCSTTCCEECHHHHHHHHHHHHHHHHHHHHHHSSSCEEEEEEEEE
T ss_pred cEEEEEEeCCcceEEEEECCCCCEEEEEEEeeeeecCCCCcEEECHHHHHHHHHHHHHHHHHHhhcCCCccceEEEEEcC
Confidence 4689999999999999999876543 222211111 12344566666665543 1366666665
Q ss_pred c
Q 030251 87 P 87 (180)
Q Consensus 87 P 87 (180)
|
T Consensus 84 ~ 84 (503)
T 2w40_A 84 Q 84 (503)
T ss_dssp C
T ss_pred C
Confidence 5
No 62
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=71.03 E-value=18 Score=24.86 Aligned_cols=88 Identities=8% Similarity=0.038 Sum_probs=51.6
Q ss_pred HHHHHHHHhhCCCEEEEecccCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEecccccHHHHHHHhccCCCCCCCCC-C
Q 030251 68 EDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYK-T 146 (180)
Q Consensus 68 ~~L~~li~e~~i~~iVVGlP~~dG~~s~~~~~v~~F~~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l~~~g~~~~~~k-~ 146 (180)
++..+.+.+..++.||+.+-+. +..+ ..+.+.|++....+.+||+++-...+...+.+.+. .|...--.| -
T Consensus 41 ~~a~~~l~~~~~dlii~D~~l~-~~~g------~~~~~~lr~~~~~~~~pii~~s~~~~~~~~~~~~~-~ga~~~l~Kp~ 112 (144)
T 3kht_A 41 AKALYQVQQAKYDLIILDIGLP-IANG------FEVMSAVRKPGANQHTPIVILTDNVSDDRAKQCMA-AGASSVVDKSS 112 (144)
T ss_dssp HHHHHHHTTCCCSEEEECTTCG-GGCH------HHHHHHHHSSSTTTTCCEEEEETTCCHHHHHHHHH-TTCSEEEECCT
T ss_pred HHHHHHhhcCCCCEEEEeCCCC-CCCH------HHHHHHHHhcccccCCCEEEEeCCCCHHHHHHHHH-cCCCEEEECCC
Confidence 5556667788999999996544 1111 35777787622246899999887777777666654 444322222 2
Q ss_pred -CCcHHHHHH--HHHHHHhh
Q 030251 147 -ILDKFAAVG--ILQEYLDN 163 (180)
Q Consensus 147 -~iD~~AA~i--ILq~yL~~ 163 (180)
..+.+.+.+ +++.|...
T Consensus 113 ~~~~~l~~~i~~~l~~~~~~ 132 (144)
T 3kht_A 113 NNVTDFYGRIYAIFSYWLTV 132 (144)
T ss_dssp TSHHHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHHHhc
Confidence 334444433 44555443
No 63
>3qfu_A 78 kDa glucose-regulated protein homolog; HSP70, KAR2, BIP, chaperone; HET: ADP; 1.80A {Saccharomyces cerevisiae} PDB: 3qfp_A 3qml_A 3ldo_A* 3ldl_A 3ldn_A* 3ldp_A*
Probab=70.43 E-value=2.9 Score=35.01 Aligned_cols=22 Identities=23% Similarity=0.576 Sum_probs=19.0
Q ss_pred CCeEEEEecCCCeEEEEEecCC
Q 030251 25 RGRFLGLDVGDKYVGLSISDPK 46 (180)
Q Consensus 25 ~~~iLalD~G~kriGvAvsd~~ 46 (180)
++.++|||+|+..+++|+.+..
T Consensus 17 ~~~viGID~GTt~s~va~~~~g 38 (394)
T 3qfu_A 17 YGTVIGIDLGTTYSCVAVMKNG 38 (394)
T ss_dssp CCSCEEEEECSSEEEEEEECSS
T ss_pred CCCEEEEEeCcCcEEEEEEECC
Confidence 4678999999999999998654
No 64
>4e1j_A Glycerol kinase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, transferase; 2.33A {Sinorhizobium meliloti}
Probab=69.45 E-value=12 Score=33.21 Aligned_cols=62 Identities=18% Similarity=0.209 Sum_probs=37.8
Q ss_pred CeEEEEecCCCeEEEEEecCCCcee-c---cceeeeCC----CCChhhHHHHHHHHHHh---------hCCCEEEEecc
Q 030251 26 GRFLGLDVGDKYVGLSISDPKNKIA-S---PLSVLLRK----KNTIDLMAEDFRSLISE---------FNLEGFIVGYP 87 (180)
Q Consensus 26 ~~iLalD~G~kriGvAvsd~~~~~a-~---Pl~~i~~~----~~~~~~~~~~L~~li~e---------~~i~~iVVGlP 87 (180)
..+||||+|+..+=+++.|..+.+. + |+.+...+ +.+++.+|+.+.+.+++ .+|.+|-|+-|
T Consensus 26 ~~~lgIDiGtts~k~~l~d~~G~il~~~~~~~~~~~p~~g~~e~dp~~~~~~i~~~i~~~~~~~~~~~~~I~~Igis~~ 104 (520)
T 4e1j_A 26 GYILAIDQGTTSTRAIVFDGNQKIAGVGQKEFKQHFPKSGWVEHDPEEIWQTVVSTVKEAIEKSGITANDIAAIGITNQ 104 (520)
T ss_dssp CEEEEEEECSSEEEEEEECTTSCEEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHTTTCCGGGEEEEEEEEC
T ss_pred CeEEEEEeCCcceEEEEECCCCCEEEEEEEecccccCCCCcEEECHHHHHHHHHHHHHHHHHhcCCCcccEEEEEEeCC
Confidence 3689999999999999999877543 2 22221111 12345566766655543 24566666644
No 65
>2d4w_A Glycerol kinase; alpha and beta protein, ribonuclease H-like motif, actin- like ATPase domain, transferase; 2.30A {Cellulomonas SP}
Probab=68.92 E-value=13 Score=32.73 Aligned_cols=62 Identities=10% Similarity=0.140 Sum_probs=38.5
Q ss_pred CeEEEEecCCCeEEEEEecCCCcee----ccceeeeCC----CCChhhHHHHHHHHHHh---------hCCCEEEEecc
Q 030251 26 GRFLGLDVGDKYVGLSISDPKNKIA----SPLSVLLRK----KNTIDLMAEDFRSLISE---------FNLEGFIVGYP 87 (180)
Q Consensus 26 ~~iLalD~G~kriGvAvsd~~~~~a----~Pl~~i~~~----~~~~~~~~~~L~~li~e---------~~i~~iVVGlP 87 (180)
..+||||+|+..+=+++.|..+.+. .|+...... ..+++.+|+.+.+.+++ .+|.+|-|+-|
T Consensus 2 ~~~lgiDiGtts~k~~l~d~~G~i~~~~~~~~~~~~p~~g~~e~d~~~~~~~i~~~i~~~~~~~~~~~~~i~~Igis~~ 80 (504)
T 2d4w_A 2 DYVLAIDQGTTSSRAIVFDHSGEIYSTGQLEHDQIFPRAGWVEHNPEQIWNNVREVVGLALTRGNLTHEDIAAVGITNQ 80 (504)
T ss_dssp CEEEEEEECSSEEEEEEECTTSCEEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEEEEC
T ss_pred CEEEEEecCCcceEEEEECCCCCEEEEEEEecceecCCCCceeECHHHHHHHHHHHHHHHHHHcCCCcccEEEEEEeCC
Confidence 3689999999999999999876543 222211111 12444566666666553 24667777765
No 66
>2itm_A Xylulose kinase, xylulokinase; ATPase, FGGY kinase, transferase; HET: XUL; 2.10A {Escherichia coli} PDB: 2nlx_A
Probab=68.61 E-value=17 Score=31.75 Aligned_cols=61 Identities=10% Similarity=0.219 Sum_probs=38.6
Q ss_pred EEEEecCCCeEEEEEecCCCcee-c---cceeeeCC----CCChhhHHHHHHHHHHh-------hCCCEEEEeccc
Q 030251 28 FLGLDVGDKYVGLSISDPKNKIA-S---PLSVLLRK----KNTIDLMAEDFRSLISE-------FNLEGFIVGYPF 88 (180)
Q Consensus 28 iLalD~G~kriGvAvsd~~~~~a-~---Pl~~i~~~----~~~~~~~~~~L~~li~e-------~~i~~iVVGlP~ 88 (180)
+||||+|+..+=+++.|..+.+. + |..+.... +.+.+.+|+.+.+.+++ .+|.+|-|+-|-
T Consensus 2 ~lgiDiGtt~~k~~l~d~~g~~l~~~~~~~~~~~p~~g~~e~d~~~~~~~i~~~i~~~~~~~~~~~i~~Igis~~~ 77 (484)
T 2itm_A 2 YIGIDLGTSGVKVILLNEQGEVVAAQTEKLTVSRPHPLWSEQDPEQWWQATDRAMKALGDQHSLQDVKALGIAGQM 77 (484)
T ss_dssp EEEEEECSSEEEEEEECTTSCEEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHHSCCTTCCEEEEEECS
T ss_pred EEEEEecCcccEEEEECCCCCEEEEEEeccccccCCCCCEeECHHHHHHHHHHHHHHHHHhCCccceEEEEEcCCc
Confidence 79999999999999999776443 2 21111111 12345567776666654 257888887654
No 67
>4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D
Probab=68.61 E-value=3.6 Score=37.45 Aligned_cols=21 Identities=29% Similarity=0.607 Sum_probs=18.0
Q ss_pred CCeEEEEecCCCeEEEEEecC
Q 030251 25 RGRFLGLDVGDKYVGLSISDP 45 (180)
Q Consensus 25 ~~~iLalD~G~kriGvAvsd~ 45 (180)
|+.++|||+|+..++||+.+.
T Consensus 1 M~~viGIDlGTT~S~Va~~~~ 21 (605)
T 4b9q_A 1 MGKIIGIDLGTTNSCVAIMDG 21 (605)
T ss_dssp -CCEEEEECCSSEEEEEEEET
T ss_pred CCcEEEEEcCCCcEEEEEEEC
Confidence 467999999999999999764
No 68
>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 4fsv_A* 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* ...
Probab=68.42 E-value=3 Score=35.26 Aligned_cols=23 Identities=17% Similarity=0.378 Sum_probs=18.8
Q ss_pred CCCeEEEEecCCCeEEEEEecCC
Q 030251 24 KRGRFLGLDVGDKYVGLSISDPK 46 (180)
Q Consensus 24 ~~~~iLalD~G~kriGvAvsd~~ 46 (180)
..+.++|||+|+..+++|+.+..
T Consensus 21 ~~~~viGID~GTt~s~va~~~~g 43 (404)
T 3i33_A 21 QSMPAIGIDLGTTYSCVGVFQHG 43 (404)
T ss_dssp --CCCEEEEECSSEEEEEEEETT
T ss_pred ccCCEEEEEcCCccEEEEEEECC
Confidence 35789999999999999998754
No 69
>2f9w_A Pantothenate kinase; COAA, transferase; HET: PAU; 1.90A {Pseudomonas aeruginosa} SCOP: c.55.1.13 c.55.1.13 PDB: 2f9t_A*
Probab=67.80 E-value=11 Score=31.19 Aligned_cols=20 Identities=20% Similarity=0.418 Sum_probs=17.8
Q ss_pred CCeEEEEecCCCeEEEEEec
Q 030251 25 RGRFLGLDVGDKYVGLSISD 44 (180)
Q Consensus 25 ~~~iLalD~G~kriGvAvsd 44 (180)
..++|+||+|..+|=+++-|
T Consensus 22 ~~M~L~IDiGNT~ik~g~~~ 41 (271)
T 2f9w_A 22 ASMILELDCGNSLIKWRVIE 41 (271)
T ss_dssp -CEEEEEEECSSCEEEEEEE
T ss_pred cCcEEEEEeCCCeeEEEEEe
Confidence 35799999999999999988
No 70
>2uyt_A Rhamnulokinase; rhamnose degradation, IN-LINE phosphoryl transfer, hexokinas actin superfamily, L-rhamnulose kinase, rhamnose metabolism kinase; HET: LRH ADP; 1.55A {Escherichia coli} PDB: 2cgk_A 2cgj_A* 2cgl_A*
Probab=66.85 E-value=10 Score=33.11 Aligned_cols=63 Identities=6% Similarity=0.101 Sum_probs=39.4
Q ss_pred CCCeEEEEecCCCeEEEEEecCCCce-ec---ccee-----eeCC---CCChhhHHHHHHHHHHhh-----CCCEEEEec
Q 030251 24 KRGRFLGLDVGDKYVGLSISDPKNKI-AS---PLSV-----LLRK---KNTIDLMAEDFRSLISEF-----NLEGFIVGY 86 (180)
Q Consensus 24 ~~~~iLalD~G~kriGvAvsd~~~~~-a~---Pl~~-----i~~~---~~~~~~~~~~L~~li~e~-----~i~~iVVGl 86 (180)
.+..+||||+|+..+=+++.|..+.+ +. ++.. .+.. ..+.+.+++.+.+.+++. +|.+|=|+-
T Consensus 2 ~~~~~lgiDiGtts~k~~l~d~~g~~~~~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~i~~~~~~~~~~~~~i~~Igis~ 81 (489)
T 2uyt_A 2 TFRNCVAVDLGASSGRVMLARYERECRSLTLREIHRFNNGLHSQNGYVTWDVDSLESAIRLGLNKVCAAGIAIDSIGIDT 81 (489)
T ss_dssp CCEEEEEEEECSSEEEEEEEEEEGGGTEEEEEEEEEEECCCEEETTEEECCHHHHHHHHHHHHHHHHHTTCCCCEEEEEE
T ss_pred CcceEEEEEecCCCceEEEEEecCccceEEEEEEeecCCCccccCCeEEECHHHHHHHHHHHHHHHHhCCCCceEEEEec
Confidence 45679999999999999998865432 21 1111 1111 123446678888887752 577776654
No 71
>4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome; HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T* 1e4f_T* 4a2b_A*
Probab=66.30 E-value=15 Score=31.78 Aligned_cols=64 Identities=16% Similarity=0.297 Sum_probs=40.5
Q ss_pred CCeEEEEecCCCeEEEEEecCCC--ceeccceeeeCCC------CChhhHHHHHHHHHHh------hCCCE-EEEeccc
Q 030251 25 RGRFLGLDVGDKYVGLSISDPKN--KIASPLSVLLRKK------NTIDLMAEDFRSLISE------FNLEG-FIVGYPF 88 (180)
Q Consensus 25 ~~~iLalD~G~kriGvAvsd~~~--~~a~Pl~~i~~~~------~~~~~~~~~L~~li~e------~~i~~-iVVGlP~ 88 (180)
...++|||+|+.+|=+.+++... .-...+...+.+. .+.+.+.+.|++.+++ .+++. +++|.|=
T Consensus 7 ~~~ivglDIGts~I~~vv~~~~~~~~~i~g~~~~~s~gv~~G~I~di~~~~~~I~~av~~ae~~~g~~i~~~v~v~i~g 85 (419)
T 4a2a_A 7 TVFYTSIDIGSRYIKGLVLGKRDQEWEALAFSSVKSRGLDEGEIKDAIAFKESVNTLLKELEEQLQKSLRSDFVISFSS 85 (419)
T ss_dssp CCEEEEEEECSSEEEEEEEEC----CEEEEEEEEECCSEETTEESBHHHHHHHHHHHHHHHHHHHTSCCCSEEEEEECC
T ss_pred CCEEEEEEccCCEEEEEEEEEcCCCCEEEEEEEeccCCeeCCEEEcHHHHHHHHHHHHHHHHHHcCCCcCceEEEEEcC
Confidence 46789999999999888876432 1111122222211 1345567888888876 37888 9999864
No 72
>3ezw_A Glycerol kinase; glycerol metabolism, allosteric regulation, microfluidics, in SITU DATA collection, ATP-binding, kinase binding; 2.00A {Escherichia coli} PDB: 1gla_G 1bo5_O* 1bot_O 1glb_G* 1glc_G* 1gld_G* 1gle_G* 1glf_O* 1bu6_O 1bwf_Y* 1glj_Y* 1gll_Y*
Probab=65.41 E-value=13 Score=32.92 Aligned_cols=51 Identities=14% Similarity=0.110 Sum_probs=32.3
Q ss_pred CCeEEEEecCCCeEEEEEecCCCcee----ccceeeeCCC----CChhhHHHHHHHHHH
Q 030251 25 RGRFLGLDVGDKYVGLSISDPKNKIA----SPLSVLLRKK----NTIDLMAEDFRSLIS 75 (180)
Q Consensus 25 ~~~iLalD~G~kriGvAvsd~~~~~a----~Pl~~i~~~~----~~~~~~~~~L~~li~ 75 (180)
...+||||+|+..+=+++-|..+.+. .++.++..+. .+++.+|+.+.+.++
T Consensus 3 kkYvlgID~GTss~Ka~l~d~~G~~va~~~~~~~~~~p~~G~~Eqdp~~~w~~~~~~i~ 61 (526)
T 3ezw_A 3 KKYIVALDQGTTSSRAVVMDHDANIISVSQREFEQIYPKPGWVEHDPMEIWATQSSTLV 61 (526)
T ss_dssp CCEEEEEEECSSEEEEEEECTTCCEEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHH
T ss_pred ceEEEEEEccccceeeeEEcCCCCEEEEEEEecCcccCCCCcEEECHHHHHHHHHHHHH
Confidence 46789999999999999998876543 3333332221 244455665544443
No 73
>4gni_A Putative heat shock protein; HSP70-type ATPase, ATP binding protein, magnesium binding, C translational chaperone; HET: ATP; 1.80A {Chaetomium thermophilum var}
Probab=65.05 E-value=4 Score=34.60 Aligned_cols=19 Identities=11% Similarity=0.351 Sum_probs=16.8
Q ss_pred CCeEEEEecCCCeEEEEEe
Q 030251 25 RGRFLGLDVGDKYVGLSIS 43 (180)
Q Consensus 25 ~~~iLalD~G~kriGvAvs 43 (180)
.+.++|||+|+..+++|+.
T Consensus 12 ~~~vvGIDlGTt~s~va~~ 30 (409)
T 4gni_A 12 ERVVIGITFGNSNSSIAHT 30 (409)
T ss_dssp -CCEEEEEECSSEEEEEEE
T ss_pred CCcEEEEEcCCCeEEEEEE
Confidence 3579999999999999997
No 74
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli}
Probab=63.51 E-value=3.8 Score=37.29 Aligned_cols=21 Identities=29% Similarity=0.635 Sum_probs=17.1
Q ss_pred CeEEEEecCCCeEEEEEecCC
Q 030251 26 GRFLGLDVGDKYVGLSISDPK 46 (180)
Q Consensus 26 ~~iLalD~G~kriGvAvsd~~ 46 (180)
+.++|||+|+..++||+.+..
T Consensus 2 ~~viGIDlGTt~s~va~~~~g 22 (605)
T 2kho_A 2 GKIIGIDLGTTNSCVAIMDGT 22 (605)
T ss_dssp --CEEEECCSSEEEEEEEETT
T ss_pred CCEEEEEcCCcCEEEEEEECC
Confidence 568999999999999998753
No 75
>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426}
Probab=62.66 E-value=5 Score=35.52 Aligned_cols=21 Identities=14% Similarity=0.461 Sum_probs=18.4
Q ss_pred CeEEEEecCCCeEEEEEecCC
Q 030251 26 GRFLGLDVGDKYVGLSISDPK 46 (180)
Q Consensus 26 ~~iLalD~G~kriGvAvsd~~ 46 (180)
+.++|||+|+..+++|+.+..
T Consensus 2 ~~~iGIDlGTt~s~va~~~~g 22 (509)
T 2v7y_A 2 SKIIGIDLGTTNSCVAVLEGG 22 (509)
T ss_dssp CCEEEEEECSSEEEEEEEETT
T ss_pred CCEEEEEcCCceEEEEEEECC
Confidence 569999999999999998754
No 76
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*
Probab=59.35 E-value=5.3 Score=37.07 Aligned_cols=22 Identities=23% Similarity=0.433 Sum_probs=18.3
Q ss_pred CCeEEEEecCCCeEEEEEecCC
Q 030251 25 RGRFLGLDVGDKYVGLSISDPK 46 (180)
Q Consensus 25 ~~~iLalD~G~kriGvAvsd~~ 46 (180)
|+.++|||+|+..+.||+.+..
T Consensus 1 Mm~~iGIDlGTtns~va~~~~g 22 (675)
T 3d2f_A 1 MSTPFGLDLGNNNSVLAVARNR 22 (675)
T ss_dssp -CCCEEEECCSSEEEEEEEETT
T ss_pred CCcEEEEEcCCCcEEEEEEECC
Confidence 3569999999999999997653
No 77
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=59.02 E-value=33 Score=23.63 Aligned_cols=48 Identities=6% Similarity=0.034 Sum_probs=33.3
Q ss_pred HHHHHHHHHhhCCCEEEEecccCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEecc
Q 030251 67 AEDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNE 123 (180)
Q Consensus 67 ~~~L~~li~e~~i~~iVVGlP~~dG~~s~~~~~v~~F~~~L~~~~~~~~lpV~~~DE 123 (180)
.+.|.+..++++++.||+|-. . +.... .-..++++-.. .++||..+-+
T Consensus 91 ~~~I~~~a~~~~~dliV~G~~-~----~~~~~-lgs~~~~vl~~---~~~pVlvv~~ 138 (141)
T 1jmv_A 91 GQVLSDAIEQYDVDLLVTGHH-Q----DFWSK-LMSSTRQVMNT---IKIDMLVVPL 138 (141)
T ss_dssp HHHHHHHHHHTTCCEEEEEEC-C----CCHHH-HHHHHHHHHTT---CCSEEEEEEC
T ss_pred HHHHHHHHHhcCCCEEEEeCC-C----chhhh-hcchHHHHHhc---CCCCEEEeeC
Confidence 588999999999999999965 3 22222 23566666653 3689887753
No 78
>1kcf_A Hypothetical 30.2 KD protein C25G10.02 in chromosome I; beta-alpha-beta motif, RUVC resolvase family, hydrolase; 2.30A {Schizosaccharomyces pombe} SCOP: a.140.2.1 c.55.3.7
Probab=58.86 E-value=26 Score=28.82 Aligned_cols=64 Identities=17% Similarity=0.135 Sum_probs=38.5
Q ss_pred CeEEEEecCCCeEEEEEecCCCceeccceeeeC----------------CCCChhhHHHHHHH----HHHhhCCCEEEEe
Q 030251 26 GRFLGLDVGDKYVGLSISDPKNKIASPLSVLLR----------------KKNTIDLMAEDFRS----LISEFNLEGFIVG 85 (180)
Q Consensus 26 ~~iLalD~G~kriGvAvsd~~~~~a~Pl~~i~~----------------~~~~~~~~~~~L~~----li~e~~i~~iVVG 85 (180)
.+||+||+|.++...|..++. ....| .+... .+..+......... ++..++++-|+|=
T Consensus 40 ~sIlSID~GikNlAyc~l~~~-~~~~p-~l~~W~kl~l~~~~~~~~~~k~~~~p~~~~~~a~~Li~~ll~~~~pd~vlIE 117 (258)
T 1kcf_A 40 SRVLGIDLGIKNFSYCFASQN-EDSKV-IIHNWSVENLTEKNGLDIQWTEDFQPSSMADLSIQLFNTLHEKFNPHVILME 117 (258)
T ss_dssp SSEEEEEECSTTEEEEEEEEC-TTSCE-EEEEEEEECTTSCCTTCCCCCCCCSHHHHHHHHHHHHHHHHHHHCCSEEEEE
T ss_pred CcEEEEecCCCceEEEEEccC-CCCCC-eeecceeeccccccccccccccCcChHHHHHHHHHHHHHhhccCCCCEEEEe
Confidence 399999999999999999842 11222 11110 11112222223333 3445799999999
Q ss_pred cccC-CC
Q 030251 86 YPFN-RQ 91 (180)
Q Consensus 86 lP~~-dG 91 (180)
--.. +|
T Consensus 118 rQr~Rs~ 124 (258)
T 1kcf_A 118 RQRYRSG 124 (258)
T ss_dssp ECCCCTT
T ss_pred ecCcccC
Confidence 8777 77
No 79
>3jvp_A Ribulokinase; PSI-II, NYSGXRC, ribulose kinase, sugar kinase, crsytal structure, structural genomics, protein structure initiative; HET: 5RP; 2.31A {Bacillus halodurans} PDB: 3qdk_A*
Probab=57.39 E-value=14 Score=33.14 Aligned_cols=26 Identities=15% Similarity=0.133 Sum_probs=20.7
Q ss_pred CCCeEEEEecCCCeEEEEEecC-CCce
Q 030251 24 KRGRFLGLDVGDKYVGLSISDP-KNKI 49 (180)
Q Consensus 24 ~~~~iLalD~G~kriGvAvsd~-~~~~ 49 (180)
.+..+||||+|+..+=+++.|. .+.+
T Consensus 3 ~~~~~lgIDiGTts~Ka~l~d~~~G~i 29 (572)
T 3jvp_A 3 LTKYTIGVDYGTESGRAVLIDLSNGQE 29 (572)
T ss_dssp --CEEEEEEECSSEEEEEEEETTTCCE
T ss_pred CCCEEEEEecCCcceEEEEEECCCCeE
Confidence 3568999999999999999997 6543
No 80
>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A
Probab=54.51 E-value=51 Score=27.37 Aligned_cols=95 Identities=6% Similarity=0.080 Sum_probs=42.8
Q ss_pred EEEecCCCeEEEEEecCCCceeccceeeeCCCCChh-hHHHHHHHHHHhhCCCEEEEecccCCCCCchH--------HHH
Q 030251 29 LGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTID-LMAEDFRSLISEFNLEGFIVGYPFNRQQNAAD--------AVQ 99 (180)
Q Consensus 29 LalD~G~kriGvAvsd~~~~~a~Pl~~i~~~~~~~~-~~~~~L~~li~e~~i~~iVVGlP~~dG~~s~~--------~~~ 99 (180)
-|+|.|+-..+.... -.+.++-.++.+. .+...| ..++++.+.+-+.++++|++. |+.++. .+.
T Consensus 9 ~~~~~~~~~~~~~~~-~~Gv~~a~vTPf~-~dg~iD~~~l~~lv~~li~~Gv~Gl~v~-----GtTGE~~~Ls~~Er~~v 81 (314)
T 3qze_A 9 SGVDLGTENLYFQSM-IAGSMVALVTPFD-AQGRLDWDSLAKLVDFHLQEGTNAIVAV-----GTTGESATLDVEEHIQV 81 (314)
T ss_dssp --------------C-CCEEEEECCCCBC-TTSCBCHHHHHHHHHHHHHHTCCEEEES-----SGGGTGGGCCHHHHHHH
T ss_pred ccccccccccccccc-CCeeEEeeECCCC-CCCCcCHHHHHHHHHHHHHcCCCEEEEC-----ccccChhhCCHHHHHHH
Confidence 478999888777643 2344444334443 233333 123444444556799999996 554442 222
Q ss_pred HHHHHHHHHhccCCCCCcEEEecccccHHHHHHHhc
Q 030251 100 VKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLN 135 (180)
Q Consensus 100 v~~F~~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l~ 135 (180)
++..++.... .+||+.-==..||.++-++.+
T Consensus 82 ~~~~v~~~~g-----rvpViaGvg~~st~eai~la~ 112 (314)
T 3qze_A 82 IRRVVDQVKG-----RIPVIAGTGANSTREAVALTE 112 (314)
T ss_dssp HHHHHHHHTT-----SSCEEEECCCSSHHHHHHHHH
T ss_pred HHHHHHHhCC-----CCcEEEeCCCcCHHHHHHHHH
Confidence 3333333322 578887666778888877654
No 81
>3lyh_A Cobalamin (vitamin B12) biosynthesis CBIX protein; structural genomics, joint center for structural genomics, protein structure initiative; HET: MSE; 1.60A {Marinobacter aquaeolei}
Probab=52.97 E-value=36 Score=23.89 Aligned_cols=55 Identities=7% Similarity=0.049 Sum_probs=41.3
Q ss_pred CEEEEecccCCCCCchHH-HHHHHHHHHHHhccCCCCCcEEEec-ccccHHHHHHHhccCCCC
Q 030251 80 EGFIVGYPFNRQQNAADA-VQVKLFIDDLSATKKLEDMKYAYWN-EGFTSKGVELLLNPLDLH 140 (180)
Q Consensus 80 ~~iVVGlP~~dG~~s~~~-~~v~~F~~~L~~~~~~~~lpV~~~D-Er~TT~~A~~~l~~~g~~ 140 (180)
..++|| .|+..+.+ ..+..|++.|++. .+.+.+-|++ ..-|-.++-+.+...|.+
T Consensus 7 alllv~----HGS~~~~~~~~~~~l~~~l~~~--~~~V~~a~le~~~P~l~~~l~~l~~~G~~ 63 (126)
T 3lyh_A 7 QIILLA----HGSSDARWCETFEKLAEPTVES--IENAAIAYMELAEPSLDTIVNRAKGQGVE 63 (126)
T ss_dssp EEEEEE----CCCSCHHHHHHHHHHHHHHHHH--STTCEEEESSSSSSBHHHHHHHHHHTTCC
T ss_pred EEEEEe----CCCCCHHHHHHHHHHHHHHHhh--cCCEEEEEEeCCCCCHHHHHHHHHHcCCC
Confidence 468899 89988754 4578999999885 2456677887 667778888888776654
No 82
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=51.81 E-value=47 Score=21.64 Aligned_cols=64 Identities=11% Similarity=0.028 Sum_probs=38.4
Q ss_pred HHHHHHHHhhCCCEEEEecccCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEecccccHHHHHHHhccCCC
Q 030251 68 EDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDL 139 (180)
Q Consensus 68 ~~L~~li~e~~i~~iVVGlP~~dG~~s~~~~~v~~F~~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l~~~g~ 139 (180)
.+..+.+.+..++.+++.+-+.++..+ ..+.+.+++....+.+||+++ ...+.....+.+ +.|.
T Consensus 39 ~~a~~~~~~~~~dlvi~d~~~~~~~~g------~~~~~~l~~~~~~~~~~ii~~-~~~~~~~~~~~~-~~g~ 102 (127)
T 2gkg_A 39 KGSVEQIRRDRPDLVVLAVDLSAGQNG------YLICGKLKKDDDLKNVPIVII-GNPDGFAQHRKL-KAHA 102 (127)
T ss_dssp HHHHHHHHHHCCSEEEEESBCGGGCBH------HHHHHHHHHSTTTTTSCEEEE-ECGGGHHHHHHS-TTCC
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCCH------HHHHHHHhcCccccCCCEEEE-ecCCchhHHHHH-HhCc
Confidence 444556677889999998644311122 256677776312458999988 666655555444 3444
No 83
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=51.22 E-value=46 Score=29.86 Aligned_cols=61 Identities=20% Similarity=0.260 Sum_probs=37.6
Q ss_pred CCeEEEEec----CCCeEEEEEecCCCceeccceeeeCCCCChhhHHHHHHHHHHhhCCCEEEEe
Q 030251 25 RGRFLGLDV----GDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVG 85 (180)
Q Consensus 25 ~~~iLalD~----G~kriGvAvsd~~~~~a~Pl~~i~~~~~~~~~~~~~L~~li~e~~i~~iVVG 85 (180)
...++|+|+ |...+++++.+..+..-.=+..+..+..+.+.+.+.|.++..+|++..|++=
T Consensus 419 ~~~~~GvD~S~G~~~D~tai~v~~~~g~~~~~v~~~~~~~~~~~~~~~~I~~l~~~y~~~~I~iD 483 (592)
T 3cpe_A 419 RKYIATLDCSEGRGQDYHALHIIDVTDDVWEQVGVLHSNTISHLILPDIVMRYLVEYNECPVYIE 483 (592)
T ss_dssp CCEEEEEECCSSBTTBCEEEEEEECSSSSEEEEEEEEESSSCTTTHHHHHHHHHHHTTSCCEEEE
T ss_pred ceEEEEEecCCCCCCCceEEEEEEcCCCceEEEEEEecCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 456899999 4567888887543310000122222222334567899999999998888774
No 84
>2bdq_A Copper homeostasis protein CUTC; alpha beta protein, structural genomics, PSI, protein structure initiative; 2.30A {Streptococcus agalactiae}
Probab=50.52 E-value=45 Score=26.94 Aligned_cols=59 Identities=8% Similarity=0.152 Sum_probs=40.5
Q ss_pred HHHhhCCCEEEEecccC-CCCCchHHHHHHHHHHHHHhccCCCCCcEEE---eccc--ccHHHHHHHhccCCCC
Q 030251 73 LISEFNLEGFIVGYPFN-RQQNAADAVQVKLFIDDLSATKKLEDMKYAY---WNEG--FTSKGVELLLNPLDLH 140 (180)
Q Consensus 73 li~e~~i~~iVVGlP~~-dG~~s~~~~~v~~F~~~L~~~~~~~~lpV~~---~DEr--~TT~~A~~~l~~~g~~ 140 (180)
.+++..+++||+| -|+ ||+... ...+++.+.. .++|++| +|+- ---.+|.+.|.+.|+.
T Consensus 84 ~~~~~GadGvV~G-~Lt~dg~iD~--~~~~~Li~~a------~~~~vTFHRAFD~~~~~d~~~ale~L~~lGv~ 148 (224)
T 2bdq_A 84 RAVELESDALVLG-ILTSNNHIDT--EAIEQLLPAT------QGLPLVFHMAFDVIPKSDQKKSIDQLVALGFT 148 (224)
T ss_dssp HHHHTTCSEEEEC-CBCTTSSBCH--HHHHHHHHHH------TTCCEEECGGGGGSCTTTHHHHHHHHHHTTCC
T ss_pred HHHHcCCCEEEEe-eECCCCCcCH--HHHHHHHHHh------CCCeEEEECchhccCCcCHHHHHHHHHHcCCC
Confidence 4666899999999 577 898764 2333444322 1688887 4776 5567788888887774
No 85
>2yhx_A Hexokinase B; transferase(phosphoryl,alcohol acceptr); HET: OTG; 2.10A {Saccharomyces cerevisiae} SCOP: i.12.1.1 PDB: 1hkg_A
Probab=50.07 E-value=14 Score=32.69 Aligned_cols=27 Identities=15% Similarity=0.313 Sum_probs=23.0
Q ss_pred CCCCeEEEEecCCCeEEEEEecCCCce
Q 030251 23 SKRGRFLGLDVGDKYVGLSISDPKNKI 49 (180)
Q Consensus 23 ~~~~~iLalD~G~kriGvAvsd~~~~~ 49 (180)
...|.+||||+|...+=+++.+..+..
T Consensus 58 ~E~G~~laiDlGGTnirv~lV~~~G~~ 84 (457)
T 2yhx_A 58 AQAGSFLAIVMGGGDLEVILISLAGRQ 84 (457)
T ss_dssp CCCEEEEEEEECSSEEEEEEEEEETTE
T ss_pred CccceEEEEEeCCCeEEEEEEEeCCCe
Confidence 356899999999999999999876655
No 86
>1bdg_A Hexokinase; phosphotransferase; HET: GLC; 2.60A {Schistosoma mansoni} SCOP: c.55.1.3 c.55.1.3
Probab=49.58 E-value=23 Score=31.16 Aligned_cols=24 Identities=25% Similarity=0.410 Sum_probs=21.1
Q ss_pred CCCeEEEEecCCCeEEEEEecCCC
Q 030251 24 KRGRFLGLDVGDKYVGLSISDPKN 47 (180)
Q Consensus 24 ~~~~iLalD~G~kriGvAvsd~~~ 47 (180)
..|.+||||+|...+=|++.+..+
T Consensus 66 E~G~~lalDlGGTn~Rv~~V~l~G 89 (451)
T 1bdg_A 66 ETGNFLALDLGGTNYRVLSVTLEG 89 (451)
T ss_dssp CCEEEEEEEESSSSEEEEEEEECC
T ss_pred ccceEEEEEeCCCeEEEEEEecCC
Confidence 358999999999999999988766
No 87
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=49.18 E-value=57 Score=22.43 Aligned_cols=63 Identities=6% Similarity=-0.022 Sum_probs=42.9
Q ss_pred HHHHHHHHHhhCCCEEEEecccCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEecccccHHHHHHHhccCCC
Q 030251 67 AEDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDL 139 (180)
Q Consensus 67 ~~~L~~li~e~~i~~iVVGlP~~dG~~s~~~~~v~~F~~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l~~~g~ 139 (180)
.++..+.+.+..++.|++.+-+. +..+ ..+++.|++. .+.+||+++-...+...+.+.+. .|.
T Consensus 55 ~~~al~~l~~~~~dlii~D~~l~-~~~g------~~~~~~l~~~--~~~~~ii~ls~~~~~~~~~~~~~-~g~ 117 (150)
T 4e7p_A 55 GQEAIQLLEKESVDIAILDVEMP-VKTG------LEVLEWIRSE--KLETKVVVVTTFKRAGYFERAVK-AGV 117 (150)
T ss_dssp HHHHHHHHTTSCCSEEEECSSCS-SSCH------HHHHHHHHHT--TCSCEEEEEESCCCHHHHHHHHH-TTC
T ss_pred HHHHHHHhhccCCCEEEEeCCCC-CCcH------HHHHHHHHHh--CCCCeEEEEeCCCCHHHHHHHHH-CCC
Confidence 35566777888999999997554 2222 3566777763 46899998887777766666554 344
No 88
>1twd_A Copper homeostasis protein CUTC; TIM-like protein, structural genomics, PSI, protein structure initiative; 1.70A {Shigella flexneri} SCOP: c.1.30.1 PDB: 1x7i_A 1x8c_A
Probab=48.33 E-value=35 Score=28.12 Aligned_cols=59 Identities=8% Similarity=0.162 Sum_probs=40.8
Q ss_pred HHHhhCCCEEEEecccC-CCCCchHHHHHHHHHHHHHhccCCCCCcEEE---ecccccHHHHHHHhccCCCC
Q 030251 73 LISEFNLEGFIVGYPFN-RQQNAADAVQVKLFIDDLSATKKLEDMKYAY---WNEGFTSKGVELLLNPLDLH 140 (180)
Q Consensus 73 li~e~~i~~iVVGlP~~-dG~~s~~~~~v~~F~~~L~~~~~~~~lpV~~---~DEr~TT~~A~~~l~~~g~~ 140 (180)
.+++..+++||+| -|+ ||+... ...+++.+.. .++|++| +|+----.+|.+.|.+.|+.
T Consensus 81 ~~~~~GadGvV~G-~Lt~dg~iD~--~~~~~Li~~a------~~~~vTFHRAfD~~~d~~~ale~L~~lG~~ 143 (256)
T 1twd_A 81 TVRELGFPGLVTG-VLDVDGNVDM--PRMEKIMAAA------GPLAVTFHRAFDMCANPLYTLNNLAELGIA 143 (256)
T ss_dssp HHHHTTCSEEEEC-CBCTTSSBCH--HHHHHHHHHH------TTSEEEECGGGGGCSCHHHHHHHHHHHTCC
T ss_pred HHHHcCCCEEEEe-eECCCCCcCH--HHHHHHHHHh------CCCcEEEECchhccCCHHHHHHHHHHcCCC
Confidence 4667899999999 577 898764 2333444322 1688887 47776778888888776764
No 89
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=48.24 E-value=59 Score=21.77 Aligned_cols=90 Identities=11% Similarity=-0.018 Sum_probs=54.5
Q ss_pred HHHHHHHHhhCCCEEEEecccCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEecccccHHHHHHHhccCCCCCCCCCCC
Q 030251 68 EDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKTI 147 (180)
Q Consensus 68 ~~L~~li~e~~i~~iVVGlP~~dG~~s~~~~~v~~F~~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l~~~g~~~~~~k~~ 147 (180)
++..+.+.+..++.|++.+-+. +..+ ..|.+.|++. .+.+||+++-...+.....+.+. .|...--. ++
T Consensus 41 ~~a~~~l~~~~~dlvi~d~~l~-~~~g------~~~~~~l~~~--~~~~~ii~~s~~~~~~~~~~~~~-~g~~~~l~-kP 109 (137)
T 3hdg_A 41 EEGERLFGLHAPDVIITDIRMP-KLGG------LEMLDRIKAG--GAKPYVIVISAFSEMKYFIKAIE-LGVHLFLP-KP 109 (137)
T ss_dssp HHHHHHHHHHCCSEEEECSSCS-SSCH------HHHHHHHHHT--TCCCEEEECCCCCCHHHHHHHHH-HCCSEECC-SS
T ss_pred HHHHHHHhccCCCEEEEeCCCC-CCCH------HHHHHHHHhc--CCCCcEEEEecCcChHHHHHHHh-CCcceeEc-CC
Confidence 4556667778999999997555 2222 3567777764 46899998877777666655543 34332111 24
Q ss_pred CcHHHHHHHHHHHHhhhhhhc
Q 030251 148 LDKFAAVGILQEYLDNANRKV 168 (180)
Q Consensus 148 iD~~AA~iILq~yL~~~~~~~ 168 (180)
+|.-.=.-.++++++......
T Consensus 110 ~~~~~l~~~i~~~~~~~~~~~ 130 (137)
T 3hdg_A 110 IEPGRLMETLEDFRHIKLAKE 130 (137)
T ss_dssp CCHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHhcCC
Confidence 454444455677776654443
No 90
>3gi1_A LBP, laminin-binding protein of group A streptococci; zinc-binding receptor, metal-binding, helical backbone, alpha/beta domains; 2.45A {Streptococcus pyogenes} PDB: 3hjt_A
Probab=48.12 E-value=31 Score=28.20 Aligned_cols=43 Identities=12% Similarity=0.104 Sum_probs=33.4
Q ss_pred chHHHHHHHHHHHHHhccCCCCCcEEEecccccHHHHHHHhccCCCC
Q 030251 94 AADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLH 140 (180)
Q Consensus 94 s~~~~~v~~F~~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l~~~g~~ 140 (180)
.+..+.+.++.+.+++. +++++|+++.+++..|+.+-++.|.+
T Consensus 211 eps~~~l~~l~~~ik~~----~v~~if~e~~~~~~~~~~la~~~g~~ 253 (286)
T 3gi1_A 211 EPSPRQLKEIQDFVKEY----NVKTIFAEDNVNPKIAHAIAKSTGAK 253 (286)
T ss_dssp -CCHHHHHHHHHHHHHT----TCCEEEECTTSCTHHHHHHHHTTTCE
T ss_pred CCCHHHHHHHHHHHHHc----CCCEEEEeCCCChHHHHHHHHHhCCe
Confidence 45577788888888874 78999999999999888776666643
No 91
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=47.26 E-value=67 Score=22.14 Aligned_cols=86 Identities=10% Similarity=0.044 Sum_probs=51.0
Q ss_pred HHHHHHHHhhCCCEEEEecccCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEecccccHHHHHHHhccCCCCCCCCCCC
Q 030251 68 EDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKTI 147 (180)
Q Consensus 68 ~~L~~li~e~~i~~iVVGlP~~dG~~s~~~~~v~~F~~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l~~~g~~~~~~k~~ 147 (180)
.+..+.+.+..++.|++.+-+. +..+ ..|.+.|++. .+.+||+++-...+...+.+.+...+...--.| +
T Consensus 48 ~~a~~~l~~~~~dlvi~D~~l~-~~~g------~~~~~~l~~~--~~~~~ii~~s~~~~~~~~~~~~~~g~~~~~l~K-P 117 (153)
T 3hv2_A 48 TQALQLLASREVDLVISAAHLP-QMDG------PTLLARIHQQ--YPSTTRILLTGDPDLKLIAKAINEGEIYRYLSK-P 117 (153)
T ss_dssp HHHHHHHHHSCCSEEEEESCCS-SSCH------HHHHHHHHHH--CTTSEEEEECCCCCHHHHHHHHHTTCCSEEECS-S
T ss_pred HHHHHHHHcCCCCEEEEeCCCC-cCcH------HHHHHHHHhH--CCCCeEEEEECCCCHHHHHHHHhCCCcceEEeC-C
Confidence 4555667788999999997555 2222 2566667663 468999999887777777666654323322222 3
Q ss_pred CcHHHHHHHHHHHHhh
Q 030251 148 LDKFAAVGILQEYLDN 163 (180)
Q Consensus 148 iD~~AA~iILq~yL~~ 163 (180)
++.-.=...++..+..
T Consensus 118 ~~~~~l~~~i~~~l~~ 133 (153)
T 3hv2_A 118 WDDQELLLALRQALEH 133 (153)
T ss_dssp CCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 3333333344455543
No 92
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=46.43 E-value=54 Score=22.13 Aligned_cols=58 Identities=10% Similarity=0.103 Sum_probs=37.6
Q ss_pred HHHHHHHHhhCCCEEEEecccCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEecccccHHHHHHHhc
Q 030251 68 EDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLN 135 (180)
Q Consensus 68 ~~L~~li~e~~i~~iVVGlP~~dG~~s~~~~~v~~F~~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l~ 135 (180)
.+..+.+.+..++.||+.+ +.+. . ...+.+.|++. .+++||+++-...+...+.+.+.
T Consensus 38 ~~a~~~l~~~~~dlvi~d~-~~~~-~------g~~~~~~l~~~--~~~~pii~ls~~~~~~~~~~~~~ 95 (142)
T 2qxy_A 38 QEAFTFLRREKIDLVFVDV-FEGE-E------SLNLIRRIREE--FPDTKVAVLSAYVDKDLIINSVK 95 (142)
T ss_dssp HHHHHHHTTSCCSEEEEEC-TTTH-H------HHHHHHHHHHH--CTTCEEEEEESCCCHHHHHHHHH
T ss_pred HHHHHHHhccCCCEEEEeC-CCCC-c------HHHHHHHHHHH--CCCCCEEEEECCCCHHHHHHHHH
Confidence 4555667778999999997 4421 1 13566677663 45799988876666555554443
No 93
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=45.74 E-value=49 Score=23.65 Aligned_cols=50 Identities=14% Similarity=0.250 Sum_probs=38.1
Q ss_pred hHHHHHHHHHHhhCCCEEEEecccCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEeccc
Q 030251 65 LMAEDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEG 124 (180)
Q Consensus 65 ~~~~~L~~li~e~~i~~iVVGlP~~dG~~s~~~~~v~~F~~~L~~~~~~~~lpV~~~DEr 124 (180)
.+-+.+.+++..|+...+||- -...++++++.+|.+.|.. .+-|+.+|..
T Consensus 37 elkdsieelvkkynativvvv-----vddkewaekairfvkslga-----qvliiiydqd 86 (134)
T 2l69_A 37 ELKDSIEELVKKYNATIVVVV-----VDDKEWAEKAIRFVKSLGA-----QVLIIIYDQD 86 (134)
T ss_dssp HHHHHHHHHTTCCCCEEEEEE-----CSSHHHHHHHHHHHHHHCC-----CCEEEEECSC
T ss_pred HHHHHHHHHHHHhCCeEEEEE-----EccHHHHHHHHHHHHhcCC-----eEEEEEEeCc
Confidence 446888999999998877776 2456899999999999985 3456666643
No 94
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=45.21 E-value=72 Score=21.90 Aligned_cols=59 Identities=5% Similarity=-0.108 Sum_probs=38.4
Q ss_pred HHHHHHHHhhCCCEEEEecccCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEecccccHHHHHHHhc
Q 030251 68 EDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLN 135 (180)
Q Consensus 68 ~~L~~li~e~~i~~iVVGlP~~dG~~s~~~~~v~~F~~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l~ 135 (180)
.+..+.+.+..++.||+.+-+. +..+ ..+.+.|++. .+.+||+++-...+...+.+.+.
T Consensus 41 ~~a~~~l~~~~~dlii~D~~l~-~~~g------~~~~~~l~~~--~~~~~ii~ls~~~~~~~~~~~~~ 99 (153)
T 3cz5_A 41 GEAYRLYRETTPDIVVMDLTLP-GPGG------IEATRHIRQW--DGAARILIFTMHQGSAFALKAFE 99 (153)
T ss_dssp HHHHHHHHTTCCSEEEECSCCS-SSCH------HHHHHHHHHH--CTTCCEEEEESCCSHHHHHHHHH
T ss_pred HHHHHHHhcCCCCEEEEecCCC-CCCH------HHHHHHHHHh--CCCCeEEEEECCCCHHHHHHHHH
Confidence 4556677788899999997554 2222 2566677663 45789988876666655555443
No 95
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=44.81 E-value=73 Score=21.85 Aligned_cols=63 Identities=8% Similarity=-0.067 Sum_probs=42.2
Q ss_pred HHHHHHHHhhCCCEEEEecccCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEecccccHHHHHHHhccCCCC
Q 030251 68 EDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLH 140 (180)
Q Consensus 68 ~~L~~li~e~~i~~iVVGlP~~dG~~s~~~~~v~~F~~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l~~~g~~ 140 (180)
.+..+.+.+..++.|++.+-+. +..+ ..+.+.|++. .+.+||+++-...+.....+.+. .|..
T Consensus 51 ~~a~~~l~~~~~dlii~d~~l~-~~~g------~~~~~~l~~~--~~~~~ii~~s~~~~~~~~~~~~~-~g~~ 113 (152)
T 3eul_A 51 AAALELIKAHLPDVALLDYRMP-GMDG------AQVAAAVRSY--ELPTRVLLISAHDEPAIVYQALQ-QGAA 113 (152)
T ss_dssp HHHHHHHHHHCCSEEEEETTCS-SSCH------HHHHHHHHHT--TCSCEEEEEESCCCHHHHHHHHH-TTCS
T ss_pred HHHHHHHHhcCCCEEEEeCCCC-CCCH------HHHHHHHHhc--CCCCeEEEEEccCCHHHHHHHHH-cCCC
Confidence 5556677788999999997554 2222 3567777763 46889998877777666655553 4443
No 96
>2prs_A High-affinity zinc uptake system protein ZNUA; protein consists of two (beta/ALFA)4 domains, metal transport; 1.70A {Escherichia coli} PDB: 2osv_A 2ps0_A 2ps3_A 2ps9_A 2ogw_A 2xy4_A* 2xqv_A* 2xh8_A
Probab=44.79 E-value=42 Score=27.19 Aligned_cols=44 Identities=11% Similarity=0.090 Sum_probs=35.8
Q ss_pred CchHHHHHHHHHHHHHhccCCCCCcEEEecccccHHHHHHHhccCCCC
Q 030251 93 NAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLH 140 (180)
Q Consensus 93 ~s~~~~~v~~F~~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l~~~g~~ 140 (180)
..+..+.+.++.+.+++. +++++|++..+++..|+.+-++.|.+
T Consensus 205 ~eps~~~l~~l~~~ik~~----~v~~if~e~~~~~~~~~~ia~~~g~~ 248 (284)
T 2prs_A 205 IQPGAQRLHEIRTQLVEQ----KATCVFAEPQFRPAVVESVARGTSVR 248 (284)
T ss_dssp SCCCHHHHHHHHHHHHHT----TCCEEEECTTSCSHHHHHHTTTSCCE
T ss_pred CCCCHHHHHHHHHHHHHc----CCCEEEEeCCCChHHHHHHHHHcCCe
Confidence 345577888899999874 89999999999999999887766654
No 97
>1toa_A Tromp-1, protein (periplasmic binding protein TROA); zinc binding protein, ABC trans binding protein; 1.80A {Treponema pallidum} SCOP: c.92.2.2 PDB: 1k0f_A
Probab=44.55 E-value=45 Score=27.69 Aligned_cols=44 Identities=14% Similarity=0.144 Sum_probs=35.8
Q ss_pred CchHHHHHHHHHHHHHhccCCCCCcEEEecccccHHHHHHHh-----ccCCCC
Q 030251 93 NAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLL-----NPLDLH 140 (180)
Q Consensus 93 ~s~~~~~v~~F~~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l-----~~~g~~ 140 (180)
..+..+.+.++.+.+++. +++++|+++..++..++.+- ++.|.+
T Consensus 228 ~eps~~~l~~l~~~ik~~----~v~~If~e~~~~~~~~~~la~~~~A~e~gv~ 276 (313)
T 1toa_A 228 SEASAHDMQELAAFIAQR----KLPAIFIESSIPHKNVEALRDAVQARGHVVQ 276 (313)
T ss_dssp SCCCHHHHHHHHHHHHHT----TCSEEEEETTSCTHHHHHHHHHHHTTTCCCE
T ss_pred CCCCHHHHHHHHHHHHHc----CCCEEEEeCCCChHHHHHHHccchhhhcCCc
Confidence 345677888899999874 79999999999999998887 777653
No 98
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=42.58 E-value=42 Score=24.23 Aligned_cols=50 Identities=12% Similarity=0.045 Sum_probs=31.6
Q ss_pred HHHHHHHHHhhCCCEEEEecccCCCCCchHHH-HHHHHHHHHHhccCCCCCcEEEecc
Q 030251 67 AEDFRSLISEFNLEGFIVGYPFNRQQNAADAV-QVKLFIDDLSATKKLEDMKYAYWNE 123 (180)
Q Consensus 67 ~~~L~~li~e~~i~~iVVGlP~~dG~~s~~~~-~v~~F~~~L~~~~~~~~lpV~~~DE 123 (180)
.+.|.+.+++++++.||+|- -..+.... ..-..++++-+. . .+||..+-.
T Consensus 108 ~~~I~~~a~~~~~DLIV~G~----~g~~~~~~~~lGSva~~vl~~--a-~~PVlvV~~ 158 (163)
T 1tq8_A 108 VDALVNLADEEKADLLVVGN----VGLSTIAGRLLGSVPANVSRR--A-KVDVLIVHT 158 (163)
T ss_dssp HHHHHHHHHHTTCSEEEEEC----CCCCSHHHHHTBBHHHHHHHH--T-TCEEEEECC
T ss_pred HHHHHHHHHhcCCCEEEECC----CCCCcccceeeccHHHHHHHh--C-CCCEEEEeC
Confidence 68899999999999999993 22222211 112344555543 2 689988753
No 99
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=42.51 E-value=38 Score=22.64 Aligned_cols=55 Identities=5% Similarity=-0.126 Sum_probs=34.2
Q ss_pred HHHHHhhCCCEEEEecccCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEecccccHHHHHHHh
Q 030251 71 RSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLL 134 (180)
Q Consensus 71 ~~li~e~~i~~iVVGlP~~dG~~s~~~~~v~~F~~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l 134 (180)
.+.+.+..++.|++.+-+. +..+ ..+.+.+++. .+++||+++-..-+...+.+.+
T Consensus 39 ~~~~~~~~~dlii~d~~l~-~~~g------~~~~~~l~~~--~~~~~ii~~s~~~~~~~~~~~~ 93 (134)
T 3f6c_A 39 VQRVETLKPDIVIIDVDIP-GVNG------IQVLETLRKR--QYSGIIIIVSAKNDHFYGKHCA 93 (134)
T ss_dssp HHHHHHHCCSEEEEETTCS-SSCH------HHHHHHHHHT--TCCSEEEEEECC---CTHHHHH
T ss_pred HHHHHhcCCCEEEEecCCC-CCCh------HHHHHHHHhc--CCCCeEEEEeCCCChHHHHHHH
Confidence 4455668899999997665 2222 3577777763 5688998886665554444444
No 100
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=42.30 E-value=47 Score=23.92 Aligned_cols=52 Identities=8% Similarity=-0.088 Sum_probs=30.6
Q ss_pred HHHHHHHHHhhCCCEEEEecccCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEeccc
Q 030251 67 AEDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEG 124 (180)
Q Consensus 67 ~~~L~~li~e~~i~~iVVGlP~~dG~~s~~~~~v~~F~~~L~~~~~~~~lpV~~~DEr 124 (180)
.+.|.+.+++++++.||+|-.-.++ -.....-..++++-.. . .+||..+-..
T Consensus 113 ~~~I~~~a~~~~~DLIVmG~~g~~~---~~~~~~Gsva~~vl~~--a-~~pVlvv~~~ 164 (175)
T 2gm3_A 113 KDVICQEVKRVRPDFLVVGSRGLGR---FQKVFVGTVSAFCVKH--A-ECPVMTIKRN 164 (175)
T ss_dssp HHHHHHHHHHHCCSEEEEEECCCC-----------CHHHHHHHH--C-SSCEEEEECC
T ss_pred HHHHHHHHHHhCCCEEEEeCCCCCh---hhhhhcCchHHHHHhC--C-CCCEEEEcCC
Confidence 5889999999999999999532211 1011112344455542 2 6898887543
No 101
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=42.27 E-value=2.4e+02 Score=27.14 Aligned_cols=126 Identities=12% Similarity=0.181 Sum_probs=67.6
Q ss_pred CCeEEEEec----CCCeEEEEEecCCCceeccceeeeCCCCChhhHHHHHHHHHHhhCCCEEEEecccCCCCCchHHHHH
Q 030251 25 RGRFLGLDV----GDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPFNRQQNAADAVQV 100 (180)
Q Consensus 25 ~~~iLalD~----G~kriGvAvsd~~~~~a~Pl~~i~~~~~~~~~~~~~L~~li~e~~i~~iVVGlP~~dG~~s~~~~~v 100 (180)
...++||-. +.+++|+|..|..+.-.. +..+... ..+..|...+...+|..|++. ++..+......
T Consensus 144 ~~~l~AIk~~~~~~~~~~Gla~~D~stge~~-~~~~~d~-----~~~~~l~~~l~~~~P~Eil~~----~~~~~~~~~~l 213 (934)
T 3thx_A 144 SIGVVGVKMSAVDGQRQVGVGYVDSIQRKLG-LCEFPDN-----DQFSNLEALLIQIGPKECVLP----GGETAGDMGKL 213 (934)
T ss_dssp -CCEEEEEECCSSSSCEEEEEEEETTTTEEE-EEEEECC-----TTCHHHHHHHHHHCCSEEEEE----SSCCCHHHHHH
T ss_pred cceEEEEEEeecCCCcEEEEEEEECCCCeEE-EEecCCc-----hHHHHHHHHHHhCCCeEEEee----CCCCcccHHHH
Confidence 467889877 678999999997654333 2333321 114678888899999999997 44433222222
Q ss_pred HHHHHHHHhccCCCCCcEEEec-ccccHHHHHHHhcc-CCCCC---CCCCC-----CCcHHHHHHHHHHHHhhhhhh
Q 030251 101 KLFIDDLSATKKLEDMKYAYWN-EGFTSKGVELLLNP-LDLHP---VEYKT-----ILDKFAAVGILQEYLDNANRK 167 (180)
Q Consensus 101 ~~F~~~L~~~~~~~~lpV~~~D-Er~TT~~A~~~l~~-~g~~~---~~~k~-----~iD~~AA~iILq~yL~~~~~~ 167 (180)
..+ +... ++.+...+ ..|++..+.+.+.. .+... ....+ .--.++|+--|=.||+.....
T Consensus 214 ~~~---~~~~----~~~~~~~~~~~f~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~gall~Yl~~~~~~ 283 (934)
T 3thx_A 214 RQI---IQRG----GILITERKKADFSTKDIYQDLNRLLKGKKGEQMNSAVLPEMENQVAVSSLSAVIKFLELLSDD 283 (934)
T ss_dssp HHH---HHHH----TCEEEEECGGGGCCSSHHHHHHHHBCCCTTSCCCGGGCGGGGCHHHHHHHHHHHHHHTGGGCG
T ss_pred HHH---Hhhc----CceEEecchhhcCHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHHHHHHhcCc
Confidence 222 2221 34454443 34554444333221 11110 00000 012467777777899876543
No 102
>3cet_A Conserved archaeal protein; Q6M145, MRR63, NESG, XRAY, structure, structural genomics, PSI-2, protein structure initiative; 1.80A {Methanococcus maripaludis S2} PDB: 3c0b_A
Probab=41.78 E-value=59 Score=27.81 Aligned_cols=96 Identities=11% Similarity=0.216 Sum_probs=39.4
Q ss_pred eEEEEecCCCeEEEEEecCCCce---eccceeeeCCCCChhhHHHHHHHHHHhhCCCEEEEecccC--CCCCchHHHHHH
Q 030251 27 RFLGLDVGDKYVGLSISDPKNKI---ASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIVGYPFN--RQQNAADAVQVK 101 (180)
Q Consensus 27 ~iLalD~G~kriGvAvsd~~~~~---a~Pl~~i~~~~~~~~~~~~~L~~li~e~~i~~iVVGlP~~--dG~~s~~~~~v~ 101 (180)
+++|+|+|...+=+|..+..+.+ -.|+... ++. +.+-+.|+++..+ ++...|=+-=. |- .....+=|.
T Consensus 1 ~iiG~DIGGAn~K~a~~~~~g~~~~~~~~~PlW--~~~--~~L~~~l~~~~~~--~~~~avtMTgELaD~-f~~k~eGV~ 73 (334)
T 3cet_A 1 MILGIDIGGANTKITELHENGEFKVHHLYFPMW--KNN--DKLAEVLKTYSND--VSHVALVTTAELADS-YETKKEGVD 73 (334)
T ss_dssp CEEEEEEC--CEEEEEECSTTCCEEEEC---------------------------CCEEEEEECCC-------CTTHHHH
T ss_pred CeeEEEecccceeeeeecCCCceEEEEEecCCc--CCc--hHHHHHHHHHHhh--hccEEEEechhhhhh-hcCHHHHHH
Confidence 48999999999999987766643 1111111 211 1222344444443 34444433222 22 222344455
Q ss_pred HHHHHHHhccCCCCCcEEEec--ccc-cHHHHHH
Q 030251 102 LFIDDLSATKKLEDMKYAYWN--EGF-TSKGVEL 132 (180)
Q Consensus 102 ~F~~~L~~~~~~~~lpV~~~D--Er~-TT~~A~~ 132 (180)
..++.+.+. | +.||+++. --+ +..+|.+
T Consensus 74 ~I~~~v~~~--~-~~~v~i~~~dGG~l~~~~a~~ 104 (334)
T 3cet_A 74 NILNAAESA--F-GSNISVFDSNGNFISLESAKT 104 (334)
T ss_dssp HHHHHHHHH--H-TTCEEEECSSSCEEETTHHHH
T ss_pred HHHHHHHHh--c-CCceEEEecCCCcccHHHHhh
Confidence 556666653 4 35776665 322 4555544
No 103
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=41.58 E-value=63 Score=21.79 Aligned_cols=56 Identities=11% Similarity=0.091 Sum_probs=31.9
Q ss_pred HHHHHHHHhhCCCEEEEecccCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEecccccHHHH
Q 030251 68 EDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGV 130 (180)
Q Consensus 68 ~~L~~li~e~~i~~iVVGlP~~dG~~s~~~~~v~~F~~~L~~~~~~~~lpV~~~DEr~TT~~A 130 (180)
.+..+.+.+..++.|++.+-+.++ .+ ..+.+.|++...++++||+++-...+...+
T Consensus 36 ~~a~~~~~~~~~dlvi~D~~l~~~-~g------~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~ 91 (140)
T 3n53_A 36 KEALEQIDHHHPDLVILDMDIIGE-NS------PNLCLKLKRSKGLKNVPLILLFSSEHKEAI 91 (140)
T ss_dssp HHHHHHHHHHCCSEEEEETTC-------------CHHHHHHTSTTCTTCCEEEEECC----CT
T ss_pred HHHHHHHhcCCCCEEEEeCCCCCC-cH------HHHHHHHHcCcccCCCCEEEEecCCCHHHH
Confidence 445566677899999999765511 11 246677776422268898887655444433
No 104
>1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ, structural protein; 2.10A {Thermotoga maritima} SCOP: c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A* 2wus_A
Probab=41.14 E-value=14 Score=30.39 Aligned_cols=19 Identities=16% Similarity=0.317 Sum_probs=15.8
Q ss_pred CeEEEEecCCCeEEEEEec
Q 030251 26 GRFLGLDVGDKYVGLSISD 44 (180)
Q Consensus 26 ~~iLalD~G~kriGvAvsd 44 (180)
...+|||+|+..+-+++.+
T Consensus 3 ~~~igIDlGT~~s~v~~~~ 21 (344)
T 1jce_A 3 RKDIGIDLGTANTLVFLRG 21 (344)
T ss_dssp -CEEEEEECSSEEEEEETT
T ss_pred CceEEEEcCcCcEEEEECC
Confidence 4689999999999998754
No 105
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=40.87 E-value=80 Score=21.16 Aligned_cols=90 Identities=13% Similarity=0.124 Sum_probs=51.8
Q ss_pred HHHHHHHHhhCCCEEEEecccCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEecccccHHHHHHHhccCCCCCCCCCCC
Q 030251 68 EDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKTI 147 (180)
Q Consensus 68 ~~L~~li~e~~i~~iVVGlP~~dG~~s~~~~~v~~F~~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l~~~g~~~~~~k~~ 147 (180)
++..+.+.+..++.|++.+-+. +..+ ..|.+.|++....+.+||+++-...+.........+.|...--. ++
T Consensus 40 ~~a~~~l~~~~~dlvi~d~~l~-~~~g------~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~~g~~~~l~-kP 111 (140)
T 3grc_A 40 AQALEQVARRPYAAMTVDLNLP-DQDG------VSLIRALRRDSRTRDLAIVVVSANAREGELEFNSQPLAVSTWLE-KP 111 (140)
T ss_dssp HHHHHHHHHSCCSEEEECSCCS-SSCH------HHHHHHHHTSGGGTTCEEEEECTTHHHHHHHHCCTTTCCCEEEC-SS
T ss_pred HHHHHHHHhCCCCEEEEeCCCC-CCCH------HHHHHHHHhCcccCCCCEEEEecCCChHHHHHHhhhcCCCEEEe-CC
Confidence 4555667788999999987554 2222 35777777521235899998877666655542334455432222 23
Q ss_pred CcHHHHHHHHHHHHhhhh
Q 030251 148 LDKFAAVGILQEYLDNAN 165 (180)
Q Consensus 148 iD~~AA~iILq~yL~~~~ 165 (180)
++.-.=...++..++...
T Consensus 112 ~~~~~l~~~i~~~l~~~~ 129 (140)
T 3grc_A 112 IDENLLILSLHRAIDNMA 129 (140)
T ss_dssp CCHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHhcC
Confidence 444444444555665543
No 106
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=40.44 E-value=78 Score=20.91 Aligned_cols=59 Identities=10% Similarity=0.096 Sum_probs=37.4
Q ss_pred HHHHHHHHhhCCCEEEEecccCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEecccccHHHHHHHhc
Q 030251 68 EDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLN 135 (180)
Q Consensus 68 ~~L~~li~e~~i~~iVVGlP~~dG~~s~~~~~v~~F~~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l~ 135 (180)
++..+.+.+..++.|++.+-+. +..+ ..+.+.+++. .+.+||+++-...+.....+.+.
T Consensus 41 ~~a~~~l~~~~~dlvi~d~~l~-~~~g------~~~~~~l~~~--~~~~~ii~~t~~~~~~~~~~~~~ 99 (130)
T 3eod_A 41 VDALELLGGFTPDLMICDIAMP-RMNG------LKLLEHIRNR--GDQTPVLVISATENMADIAKALR 99 (130)
T ss_dssp HHHHHHHTTCCCSEEEECCC------C------HHHHHHHHHT--TCCCCEEEEECCCCHHHHHHHHH
T ss_pred HHHHHHHhcCCCCEEEEecCCC-CCCH------HHHHHHHHhc--CCCCCEEEEEcCCCHHHHHHHHH
Confidence 4555667888999999997554 1112 2566677763 45789988876666665555543
No 107
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=40.27 E-value=90 Score=21.59 Aligned_cols=88 Identities=8% Similarity=-0.022 Sum_probs=51.0
Q ss_pred HHHHHHHHhhCCCEEEEecccCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEecccccHHHHHHHhccCCCCCCCCCCC
Q 030251 68 EDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKTI 147 (180)
Q Consensus 68 ~~L~~li~e~~i~~iVVGlP~~dG~~s~~~~~v~~F~~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l~~~g~~~~~~k~~ 147 (180)
++..+.+.+..++.|++.+-+. +..+ ..+++.|++...++.+||+++-...+...+.+.+. .|...--. ++
T Consensus 41 ~~al~~l~~~~~dlii~D~~l~-~~~g------~~~~~~lr~~~~~~~~pii~~s~~~~~~~~~~~~~-~g~~~~l~-KP 111 (154)
T 3gt7_A 41 REAVRFLSLTRPDLIISDVLMP-EMDG------YALCRWLKGQPDLRTIPVILLTILSDPRDVVRSLE-CGADDFIT-KP 111 (154)
T ss_dssp HHHHHHHTTCCCSEEEEESCCS-SSCH------HHHHHHHHHSTTTTTSCEEEEECCCSHHHHHHHHH-HCCSEEEE-SS
T ss_pred HHHHHHHHhCCCCEEEEeCCCC-CCCH------HHHHHHHHhCCCcCCCCEEEEECCCChHHHHHHHH-CCCCEEEe-CC
Confidence 4556667888999999997655 2222 35667777632235789988876666665555543 33322111 24
Q ss_pred CcHHHHHHHHHHHHhhh
Q 030251 148 LDKFAAVGILQEYLDNA 164 (180)
Q Consensus 148 iD~~AA~iILq~yL~~~ 164 (180)
++.-.-...++..+...
T Consensus 112 ~~~~~l~~~i~~~l~~~ 128 (154)
T 3gt7_A 112 CKDVVLASHVKRLLSGV 128 (154)
T ss_dssp CCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 44444444455666544
No 108
>3cx3_A Lipoprotein; zinc-binding, transport, lipid binding protein, metal binding protein; 2.40A {Streptococcus pneumoniae}
Probab=39.76 E-value=57 Score=26.43 Aligned_cols=43 Identities=14% Similarity=0.114 Sum_probs=34.7
Q ss_pred chHHHHHHHHHHHHHhccCCCCCcEEEecccccHHHHHHHhccCCCC
Q 030251 94 AADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLH 140 (180)
Q Consensus 94 s~~~~~v~~F~~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l~~~g~~ 140 (180)
.+..+.+.++.+.+++. +++++|+++.+++..++.+-++.|.+
T Consensus 209 eps~~~l~~l~~~ik~~----~v~~if~e~~~~~~~~~~ia~~~g~~ 251 (284)
T 3cx3_A 209 EPSPRQLTEIQEFVKTY----KVKTIFTESNASSKVAETLVKSTGVG 251 (284)
T ss_dssp CCCSHHHHHHHHHHHHT----TCCCEEECSSSCCHHHHHHHSSSSCC
T ss_pred CCCHHHHHHHHHHHHHc----CCCEEEEeCCCCcHHHHHHHHHcCCe
Confidence 34567778888888874 78999999999999999887776654
No 109
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=39.40 E-value=84 Score=21.01 Aligned_cols=59 Identities=14% Similarity=0.037 Sum_probs=38.1
Q ss_pred HHHHHHHHhhCCCEEEEecccCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEecccccHHHHHHHhc
Q 030251 68 EDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLN 135 (180)
Q Consensus 68 ~~L~~li~e~~i~~iVVGlP~~dG~~s~~~~~v~~F~~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l~ 135 (180)
.+..+.+.+..++.+++.+-+. +..+ ..+.+.|++. .+.+||+++-..-+...+.+.+.
T Consensus 39 ~~al~~~~~~~~dlvilD~~lp-~~~g------~~~~~~l~~~--~~~~~ii~ls~~~~~~~~~~~~~ 97 (133)
T 3b2n_A 39 LDAMKLIEEYNPNVVILDIEMP-GMTG------LEVLAEIRKK--HLNIKVIIVTTFKRPGYFEKAVV 97 (133)
T ss_dssp HHHHHHHHHHCCSEEEECSSCS-SSCH------HHHHHHHHHT--TCSCEEEEEESCCCHHHHHHHHH
T ss_pred HHHHHHHhhcCCCEEEEecCCC-CCCH------HHHHHHHHHH--CCCCcEEEEecCCCHHHHHHHHH
Confidence 3445556778899999986544 2222 2466677763 46899998876666666655554
No 110
>2o1e_A YCDH; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.60A {Bacillus subtilis}
Probab=38.51 E-value=43 Score=27.75 Aligned_cols=44 Identities=16% Similarity=0.184 Sum_probs=35.2
Q ss_pred CchHHHHHHHHHHHHHhccCCCCCcEEEecccccHHHHHHHhccCCCC
Q 030251 93 NAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLH 140 (180)
Q Consensus 93 ~s~~~~~v~~F~~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l~~~g~~ 140 (180)
..+..+.+.++.+.+++. +++++|+++.+++..++.+-++.|.+
T Consensus 221 ~eps~~~l~~l~~~ik~~----~v~~If~e~~~~~~~~~~ia~e~g~~ 264 (312)
T 2o1e_A 221 QEPSAASLAKLKTYAKEH----NVKVIYFEEIASSKVADTLASEIGAK 264 (312)
T ss_dssp SCCCHHHHHHHHHHTTSS----CCCEEECSSCCCHHHHHHHHHHTCCE
T ss_pred CCCCHHHHHHHHHHHHHc----CCCEEEEeCCCChHHHHHHHHHhCCc
Confidence 345577788888888863 89999999999999998887776654
No 111
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=38.31 E-value=85 Score=20.74 Aligned_cols=61 Identities=10% Similarity=0.065 Sum_probs=39.1
Q ss_pred HHHHHHHHhhCCCEEEEecccCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEecccccHHHHHHHhc
Q 030251 68 EDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLN 135 (180)
Q Consensus 68 ~~L~~li~e~~i~~iVVGlP~~dG~~s~~~~~v~~F~~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l~ 135 (180)
.+..+.+.++.++.|++.+-+. |..+ -.+.+.|++....+++||+++-..-+...+.+.+.
T Consensus 36 ~~al~~l~~~~~dlvllD~~~p-~~~g------~~~~~~l~~~~~~~~~pii~~s~~~~~~~~~~~~~ 96 (122)
T 3gl9_A 36 QIALEKLSEFTPDLIVLXIMMP-VMDG------FTVLKKLQEKEEWKRIPVIVLTAKGGEEDESLALS 96 (122)
T ss_dssp HHHHHHHTTBCCSEEEECSCCS-SSCH------HHHHHHHHTSTTTTTSCEEEEESCCSHHHHHHHHH
T ss_pred HHHHHHHHhcCCCEEEEeccCC-CCcH------HHHHHHHHhcccccCCCEEEEecCCchHHHHHHHh
Confidence 4445566788999999985443 3223 25677776532245789998877666666655543
No 112
>1t6c_A Exopolyphosphatase; alpha/beta protein, actin-like fold, hydrolase; 1.53A {Aquifex aeolicus} SCOP: c.55.1.8 c.55.1.8 PDB: 1t6d_A 2j4r_A*
Probab=38.08 E-value=81 Score=26.10 Aligned_cols=89 Identities=19% Similarity=0.229 Sum_probs=55.3
Q ss_pred CCeEEEEecCCCeEEEEEecCCCceeccceeee---CCCCC--------------hhhHHHHHHHHHHhhCCCEEE-Eec
Q 030251 25 RGRFLGLDVGDKYVGLSISDPKNKIASPLSVLL---RKKNT--------------IDLMAEDFRSLISEFNLEGFI-VGY 86 (180)
Q Consensus 25 ~~~iLalD~G~kriGvAvsd~~~~~a~Pl~~i~---~~~~~--------------~~~~~~~L~~li~e~~i~~iV-VGl 86 (180)
.+++-+||.|+-.|=+.|.+....-..++.... +-... .-..+...++++++++++.+. ++
T Consensus 11 ~m~~a~IDiGSns~rl~I~~~~~~~~~~i~~~k~~vrLg~g~~~~g~ls~eai~r~~~~L~~f~~~~~~~~v~~i~~vA- 89 (315)
T 1t6c_A 11 IMRVASIDIGSYSVRLTIAQIKDGKLSIILERGRITSLGTKVKETGRLQEDRIEETIQVLKEYKKLIDEFKVERVKAVA- 89 (315)
T ss_dssp CEEEEEEEECSSEEEEEEEEEETTEEEEEEEEEEECCTTTTHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTCSEEEEEE-
T ss_pred CcEEEEEEECcCcEEEEEEEEcCCcEEEEeeeeEEeecCCCccccCCcCHHHHHHHHHHHHHHHHHHHHCCCCeEEEEE-
Confidence 358889999999999999986432222222111 10000 012356677888889998555 66
Q ss_pred ccCCCCCc-hHHHHHHHHHHHHHhccCCCCCcEEEec
Q 030251 87 PFNRQQNA-ADAVQVKLFIDDLSATKKLEDMKYAYWN 122 (180)
Q Consensus 87 P~~dG~~s-~~~~~v~~F~~~L~~~~~~~~lpV~~~D 122 (180)
|.. ..+.....|.+++++. . +++|..++
T Consensus 90 -----TsA~R~A~N~~~fl~~v~~~--~-G~~i~vIs 118 (315)
T 1t6c_A 90 -----TEAIRRAKNAEEFLERVKRE--V-GLVVEVIT 118 (315)
T ss_dssp -----CHHHHTSTTHHHHHHHHHHH--T-CCCEEECC
T ss_pred -----cHHHHcCcCHHHHHHHHHHH--H-CCCEEEcC
Confidence 321 1233446899999974 3 88888886
No 113
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=37.89 E-value=32 Score=24.35 Aligned_cols=47 Identities=6% Similarity=0.050 Sum_probs=30.6
Q ss_pred HHHHHHHHHhhCCCEEEEecccCCC----CCchHHHHHHHHHHHHHhccCCCCCcEEEecc
Q 030251 67 AEDFRSLISEFNLEGFIVGYPFNRQ----QNAADAVQVKLFIDDLSATKKLEDMKYAYWNE 123 (180)
Q Consensus 67 ~~~L~~li~e~~i~~iVVGlP~~dG----~~s~~~~~v~~F~~~L~~~~~~~~lpV~~~DE 123 (180)
.+.|.+..++++++.||+|-.-..+ -.+. .++++-+. . .+||..+-.
T Consensus 109 ~~~I~~~a~~~~~dlIV~G~~g~~~~~~~~~GS-------v~~~vl~~--~-~~pVlvv~~ 159 (162)
T 1mjh_A 109 HEEIVKIAEDEGVDIIIMGSHGKTNLKEILLGS-------VTENVIKK--S-NKPVLVVKR 159 (162)
T ss_dssp HHHHHHHHHHTTCSEEEEESCCSSCCTTCSSCH-------HHHHHHHH--C-CSCEEEECC
T ss_pred HHHHHHHHHHcCCCEEEEcCCCCCCccceEecc-------hHHHHHHh--C-CCCEEEEeC
Confidence 6889999999999999999642211 1222 33344432 2 688888754
No 114
>1b5f_B Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2
Probab=37.60 E-value=27 Score=22.99 Aligned_cols=17 Identities=24% Similarity=0.341 Sum_probs=13.9
Q ss_pred eEEEEecCCCeEEEEEe
Q 030251 27 RFLGLDVGDKYVGLSIS 43 (180)
Q Consensus 27 ~iLalD~G~kriGvAvs 43 (180)
.+.-+|+|..|||+|-.
T Consensus 70 ~y~vfD~~~~riGfA~~ 86 (87)
T 1b5f_B 70 YHTVFDYGNLLVGFAEA 86 (87)
T ss_dssp EEEEEETTTTEEEEEEE
T ss_pred EEEEEECCCCEEEEEEc
Confidence 45569999999999953
No 115
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=37.43 E-value=97 Score=21.16 Aligned_cols=84 Identities=10% Similarity=-0.027 Sum_probs=41.3
Q ss_pred HHHHHHHHh-hCCCEEEEecccCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEecccccHHHHHHHhccCCCCCCCCCC
Q 030251 68 EDFRSLISE-FNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKT 146 (180)
Q Consensus 68 ~~L~~li~e-~~i~~iVVGlP~~dG~~s~~~~~v~~F~~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l~~~g~~~~~~k~ 146 (180)
.+..+.+.+ ..++.||+.+-+. +..+ ..+.+.+.+. .+.+||+++-..-+...+.+.+. .|...--.|
T Consensus 39 ~~a~~~l~~~~~~dlvi~d~~l~-~~~g------~~~~~~l~~~--~~~~~ii~ls~~~~~~~~~~~~~-~g~~~~l~k- 107 (154)
T 2qsj_A 39 SDALAFLEADNTVDLILLDVNLP-DAEA------IDGLVRLKRF--DPSNAVALISGETDHELIRAALE-AGADGFIPK- 107 (154)
T ss_dssp HHHHHHHHTTCCCSEEEECC-------C------HHHHHHHHHH--CTTSEEEEC-----CHHHHHHHH-TTCCBBCCT-
T ss_pred HHHHHHHhccCCCCEEEEeCCCC-CCch------HHHHHHHHHh--CCCCeEEEEeCCCCHHHHHHHHH-ccCCEEEeC-
Confidence 455566666 8899999997554 1112 2466667663 45889988765555555554443 444332222
Q ss_pred CCcHHHHHHHHHHHHh
Q 030251 147 ILDKFAAVGILQEYLD 162 (180)
Q Consensus 147 ~iD~~AA~iILq~yL~ 162 (180)
+++.-.=...++..+.
T Consensus 108 p~~~~~L~~~l~~~~~ 123 (154)
T 2qsj_A 108 SADPQVLIHAVSLILE 123 (154)
T ss_dssp TSCHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHc
Confidence 3433333333445544
No 116
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=37.21 E-value=91 Score=20.75 Aligned_cols=87 Identities=8% Similarity=0.047 Sum_probs=49.3
Q ss_pred HHHHHHHHhhCCCEEEEecccCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEecccccHHHHHHHhccCCCCCCCCCCC
Q 030251 68 EDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKTI 147 (180)
Q Consensus 68 ~~L~~li~e~~i~~iVVGlP~~dG~~s~~~~~v~~F~~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l~~~g~~~~~~k~~ 147 (180)
.+..+.+.+..++.||+.+-+. +..+ ..+.+.|++....+.+||+++-...+.....+.+. .|...--. ++
T Consensus 44 ~~a~~~l~~~~~dlii~d~~l~-~~~g------~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~-~g~~~~l~-kP 114 (143)
T 3cnb_A 44 FDAGDLLHTVKPDVVMLDLMMV-GMDG------FSICHRIKSTPATANIIVIAMTGALTDDNVSRIVA-LGAETCFG-KP 114 (143)
T ss_dssp HHHHHHHHHTCCSEEEEETTCT-TSCH------HHHHHHHHTSTTTTTSEEEEEESSCCHHHHHHHHH-TTCSEEEE-SS
T ss_pred HHHHHHHHhcCCCEEEEecccC-CCcH------HHHHHHHHhCccccCCcEEEEeCCCCHHHHHHHHh-cCCcEEEe-CC
Confidence 4555666778899999997554 2222 25677777621245889988876666665555443 34332211 24
Q ss_pred CcHHHHHHHHHHHHhh
Q 030251 148 LDKFAAVGILQEYLDN 163 (180)
Q Consensus 148 iD~~AA~iILq~yL~~ 163 (180)
++.-.-.-.++..+..
T Consensus 115 ~~~~~l~~~i~~~~~~ 130 (143)
T 3cnb_A 115 LNFTLLEKTIKQLVEQ 130 (143)
T ss_dssp CCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHh
Confidence 4443333444555543
No 117
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=36.82 E-value=35 Score=23.76 Aligned_cols=49 Identities=10% Similarity=0.002 Sum_probs=28.3
Q ss_pred HHHHHHHHHhhCCCEEEEecccCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEec
Q 030251 67 AEDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWN 122 (180)
Q Consensus 67 ~~~L~~li~e~~i~~iVVGlP~~dG~~s~~~~~v~~F~~~L~~~~~~~~lpV~~~D 122 (180)
.+.|.+..++++++.||+|-.-. +......-..++++-.. . .+||..+-
T Consensus 98 ~~~I~~~a~~~~~dliV~G~~~~----~~~~~~~Gs~~~~vl~~--~-~~pVlvv~ 146 (150)
T 3tnj_A 98 REEIIRIAEQENVDLIVVGSHGR----HGLALLLGSTANSVLHY--A-KCDVLAVR 146 (150)
T ss_dssp HHHHHHHHHHTTCSEEEEEEC------------CCCHHHHHHHH--C-SSEEEEEE
T ss_pred HHHHHHHHHHcCCCEEEEecCCC----CCcCeEecchHHHHHHh--C-CCCEEEEe
Confidence 58899999999999999994322 11111111234444442 2 68887764
No 118
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=36.72 E-value=71 Score=24.47 Aligned_cols=51 Identities=10% Similarity=0.003 Sum_probs=35.5
Q ss_pred HHHHHHHHHhhCCCEEEEecccCCCCCchHHHHHHHHHHHHHh---ccCCCCCcEEEec
Q 030251 67 AEDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSA---TKKLEDMKYAYWN 122 (180)
Q Consensus 67 ~~~L~~li~e~~i~~iVVGlP~~dG~~s~~~~~v~~F~~~L~~---~~~~~~lpV~~~D 122 (180)
+.++.+.+. ..|++||+-|-.+|+.+...+. |.+.|.. ...|.+-|+.++-
T Consensus 58 ~~~l~~~i~--~aD~~ii~tPeYn~s~pg~LKn---~iDwlsr~~~~~~~~gKpv~~v~ 111 (190)
T 3u7r_A 58 VLRLKDRIE--HSDAVLAITPEYNRSYPGMIKN---AIDWATRPYGQNSWKGKPAAVIG 111 (190)
T ss_dssp HHHHHHHHH--TSSEEEEECCCBTTBCCHHHHH---HHHHHHCSTTCCTTTTCEEEEEE
T ss_pred HHHHHHHHH--hCCcEEEechhhcccCCHHHHH---HHHHhcccccCCccCCCEEEEEE
Confidence 566777666 7899999999998888876554 5555642 1124577877763
No 119
>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A
Probab=36.58 E-value=92 Score=25.49 Aligned_cols=52 Identities=12% Similarity=0.061 Sum_probs=36.7
Q ss_pred HHHHHHHHHhhCCCEEEEecccC-CCCCchHHHHHHHHHHHHHhccCCCCCcEEEecccccH
Q 030251 67 AEDFRSLISEFNLEGFIVGYPFN-RQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTS 127 (180)
Q Consensus 67 ~~~L~~li~e~~i~~iVVGlP~~-dG~~s~~~~~v~~F~~~L~~~~~~~~lpV~~~DEr~TT 127 (180)
++.|.+.+.+.+...|++--|.+ .|...+ -+.+.++ .++. ++ ++.+||-++-
T Consensus 175 ~~~le~~l~~~~~~~vi~~~~~nptG~~~~-l~~l~~l---a~~~----~~-~li~De~~~~ 227 (409)
T 3kki_A 175 CDHLRMLIQRHGPGIIVVDSIYSTLGTIAP-LAELVNI---SKEF----GC-ALLVDESHSL 227 (409)
T ss_dssp HHHHHHHHHHHCSCEEEEESBCTTTCCBCC-HHHHHHH---HHHH----TC-EEEEECTTTT
T ss_pred HHHHHHHHHhcCCeEEEECCCCCCCCCcCC-HHHHHHH---HHHc----CC-EEEEECCccc
Confidence 58889999888889999998888 888776 3333444 3332 33 5677887754
No 120
>4h08_A Putative hydrolase; GDSL-like lipase/acylhydrolase family protein, structural GE joint center for structural genomics, JCSG; HET: GOL; 1.80A {Bacteroides thetaiotaomicron}
Probab=36.44 E-value=1.2e+02 Score=22.10 Aligned_cols=55 Identities=5% Similarity=0.043 Sum_probs=36.6
Q ss_pred hHHHHHHHHHHhhCCCEEEEecccCCC--CCchHHHHHHHHHHHHHhccCCCCCcEEEe
Q 030251 65 LMAEDFRSLISEFNLEGFIVGYPFNRQ--QNAADAVQVKLFIDDLSATKKLEDMKYAYW 121 (180)
Q Consensus 65 ~~~~~L~~li~e~~i~~iVVGlP~~dG--~~s~~~~~v~~F~~~L~~~~~~~~lpV~~~ 121 (180)
.+++.+.+.+...+++.|||-+=.||- +..+-....+++.+.+++. .|+.+|+++
T Consensus 61 ~~~~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~~~l~~ii~~l~~~--~p~~~ii~~ 117 (200)
T 4h08_A 61 ALIEELAVVLKNTKFDVIHFNNGLHGFDYTEEEYDKSFPKLIKIIRKY--APKAKLIWA 117 (200)
T ss_dssp HHHHHHHHHHHHSCCSEEEECCCSSCTTSCHHHHHHHHHHHHHHHHHH--CTTCEEEEE
T ss_pred HHHHHHHHHHhcCCCCeEEEEeeeCCCCCCHHHHHHHHHHHHHHHhhh--CCCccEEEe
Confidence 346788888889999999996545522 2223345567788888764 456677654
No 121
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=36.36 E-value=96 Score=20.81 Aligned_cols=58 Identities=5% Similarity=0.005 Sum_probs=37.5
Q ss_pred HHHHHHH--hhCCCEEEEecccCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEecccccHHHHHHHhc
Q 030251 69 DFRSLIS--EFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLN 135 (180)
Q Consensus 69 ~L~~li~--e~~i~~iVVGlP~~dG~~s~~~~~v~~F~~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l~ 135 (180)
+..+.+. +..++.|++.+-+. +..+ ..|.+.|++. .+.+||+++-...+...+.+.+.
T Consensus 38 ~a~~~~~~~~~~~dlvi~d~~l~-~~~g------~~~~~~l~~~--~~~~~ii~ls~~~~~~~~~~~~~ 97 (143)
T 3jte_A 38 EGLRIFTENCNSIDVVITDMKMP-KLSG------MDILREIKKI--TPHMAVIILTGHGDLDNAILAMK 97 (143)
T ss_dssp HHHHHHHHTTTTCCEEEEESCCS-SSCH------HHHHHHHHHH--CTTCEEEEEECTTCHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCEEEEeCCCC-CCcH------HHHHHHHHHh--CCCCeEEEEECCCCHHHHHHHHH
Confidence 3344455 56899999997655 2222 2566667663 45899998877777666655554
No 122
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=36.28 E-value=1e+02 Score=21.09 Aligned_cols=63 Identities=8% Similarity=0.092 Sum_probs=41.1
Q ss_pred HHHHHHHHhhCCCEEEEecccCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEecccccHHHHHHHhccCCC
Q 030251 68 EDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDL 139 (180)
Q Consensus 68 ~~L~~li~e~~i~~iVVGlP~~dG~~s~~~~~v~~F~~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l~~~g~ 139 (180)
.+..+.+.+..++.||+.+.+. +..+ ..+.+.|++. .+.+||+++-...+...+.+.+...|.
T Consensus 41 ~~a~~~l~~~~~dlvi~d~~l~-~~~g------~~~~~~l~~~--~~~~~ii~ls~~~~~~~~~~~~~~g~~ 103 (154)
T 2rjn_A 41 LDALEALKGTSVQLVISDMRMP-EMGG------EVFLEQVAKS--YPDIERVVISGYADAQATIDAVNRGKI 103 (154)
T ss_dssp HHHHHHHTTSCCSEEEEESSCS-SSCH------HHHHHHHHHH--CTTSEEEEEECGGGHHHHHHHHHTTCC
T ss_pred HHHHHHHhcCCCCEEEEecCCC-CCCH------HHHHHHHHHh--CCCCcEEEEecCCCHHHHHHHHhccch
Confidence 5556677778899999997655 2222 2466667653 458899888766666666666554434
No 123
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=36.10 E-value=1.4e+02 Score=22.97 Aligned_cols=83 Identities=6% Similarity=-0.035 Sum_probs=42.9
Q ss_pred HHHHHHHHhhCCCEEEEecccCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEecccc--------------cHHHHHHH
Q 030251 68 EDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGF--------------TSKGVELL 133 (180)
Q Consensus 68 ~~L~~li~e~~i~~iVVGlP~~dG~~s~~~~~v~~F~~~L~~~~~~~~lpV~~~DEr~--------------TT~~A~~~ 133 (180)
..+.+++.+.++++||+- |.. ... ...+.+.+. ++||+++|... ....|-+.
T Consensus 56 ~~~~~~l~~~~vdgiIi~-~~~---~~~------~~~~~l~~~----~iPvV~i~~~~~~~~~~~V~~D~~~~g~~a~~~ 121 (288)
T 3gv0_A 56 VPIRYILETGSADGVIIS-KIE---PND------PRVRFMTER----NMPFVTHGRSDMGIEHAFHDFDNEAYAYEAVER 121 (288)
T ss_dssp HHHHHHHHHTCCSEEEEE-SCC---TTC------HHHHHHHHT----TCCEEEESCCCSSCCCEEEEECHHHHHHHHHHH
T ss_pred HHHHHHHHcCCccEEEEe-cCC---CCc------HHHHHHhhC----CCCEEEECCcCCCCCCcEEEeCcHHHHHHHHHH
Confidence 566777778899999986 322 111 233455542 67777776433 23445555
Q ss_pred hccCCCCCCC-CCCCCcHHHHHHHHHHHHhhh
Q 030251 134 LNPLDLHPVE-YKTILDKFAAVGILQEYLDNA 164 (180)
Q Consensus 134 l~~~g~~~~~-~k~~iD~~AA~iILq~yL~~~ 164 (180)
|.+.|.++-- --...+......-++.|.+..
T Consensus 122 L~~~G~~~I~~i~~~~~~~~~~~R~~gf~~~l 153 (288)
T 3gv0_A 122 LAQCGRKRIAVIVPPSRFSFHDHARKGFNRGI 153 (288)
T ss_dssp HHHTTCCEEEEECCCTTSHHHHHHHHHHHHHH
T ss_pred HHHCCCCeEEEEcCCcccchHHHHHHHHHHHH
Confidence 5555533200 012223334445556665554
No 124
>1xvl_A Mn transporter, MNTC protein; manganese, ABC-type transport systems, photosynthesis, cyanobacteria, disulfide bond, metal transport; 2.90A {Synechocystis SP} SCOP: c.92.2.2
Probab=35.87 E-value=66 Score=26.76 Aligned_cols=44 Identities=11% Similarity=0.229 Sum_probs=34.7
Q ss_pred CchHHHHHHHHHHHHHhccCCCCCcEEEecccccHHHHHHHhccCCCC
Q 030251 93 NAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLH 140 (180)
Q Consensus 93 ~s~~~~~v~~F~~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l~~~g~~ 140 (180)
..+..+.+.++.+.+++. +++++|+++.+++..++.+-++.|.+
T Consensus 235 ~eps~~~l~~l~~~ik~~----~v~~If~e~~~~~~~~~~iA~e~g~~ 278 (321)
T 1xvl_A 235 QQFTPKQVQTVIEEVKTN----NVPTIFCESTVSDKGQKQVAQATGAR 278 (321)
T ss_dssp CSCCHHHHHHHHHHHHTT----TCSEEEEETTSCSHHHHHHHTTTCCE
T ss_pred CCCCHHHHHHHHHHHHHc----CCcEEEEeCCCChHHHHHHHHhcCCc
Confidence 345567788888888873 78999999999999988887766654
No 125
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=35.68 E-value=1.1e+02 Score=21.23 Aligned_cols=59 Identities=7% Similarity=-0.032 Sum_probs=38.8
Q ss_pred HHHHHHHHhh--CCCEEEEecccCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEecccccHHHHHHHhc
Q 030251 68 EDFRSLISEF--NLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLN 135 (180)
Q Consensus 68 ~~L~~li~e~--~i~~iVVGlP~~dG~~s~~~~~v~~F~~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l~ 135 (180)
++..+.+.+. .++.|++.+-+. +..+ ..+.+.|++. .+.+||+++-...+...+.+.+.
T Consensus 71 ~~al~~l~~~~~~~dliilD~~l~-~~~g------~~~~~~lr~~--~~~~~ii~ls~~~~~~~~~~~~~ 131 (157)
T 3hzh_A 71 EEAVIKYKNHYPNIDIVTLXITMP-KMDG------ITCLSNIMEF--DKNARVIMISALGKEQLVKDCLI 131 (157)
T ss_dssp HHHHHHHHHHGGGCCEEEECSSCS-SSCH------HHHHHHHHHH--CTTCCEEEEESCCCHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCEEEEeccCC-CccH------HHHHHHHHhh--CCCCcEEEEeccCcHHHHHHHHH
Confidence 4555566667 789999986554 2222 3566777763 46889998887776666655543
No 126
>3ujp_A Mn transporter subunit; manganese binding protein, metal binding protein; 2.70A {Synechocystis SP} PDB: 1xvl_A 3v63_A
Probab=35.46 E-value=73 Score=26.40 Aligned_cols=43 Identities=12% Similarity=0.229 Sum_probs=35.2
Q ss_pred chHHHHHHHHHHHHHhccCCCCCcEEEecccccHHHHHHHhccCCCC
Q 030251 94 AADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLH 140 (180)
Q Consensus 94 s~~~~~v~~F~~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l~~~g~~ 140 (180)
.+..+.+.++.+.+++. +++++|+++.+++..|+..-++.|.+
T Consensus 222 ePs~~~l~~l~~~ik~~----~v~~If~e~~~~~k~~~~ia~e~g~~ 264 (307)
T 3ujp_A 222 QFTPKQVQTVIEEVKTN----NVPTIFCESTVSDKGQKQVAQATGAR 264 (307)
T ss_dssp CCCHHHHHHHHHHHHTT----TCSEEEEETTSCSHHHHHTTTTTCCE
T ss_pred CCCHHHHHHHHHHHHhc----CCcEEEEeCCCChHHHHHHHHHhCCc
Confidence 34567888899999874 89999999999999998887777754
No 127
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=35.05 E-value=1.5e+02 Score=22.63 Aligned_cols=46 Identities=4% Similarity=0.139 Sum_probs=25.1
Q ss_pred HHHHHHHHhhCCCEEEEecccCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEeccccc
Q 030251 68 EDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFT 126 (180)
Q Consensus 68 ~~L~~li~e~~i~~iVVGlP~~dG~~s~~~~~v~~F~~~L~~~~~~~~lpV~~~DEr~T 126 (180)
+.+..++ +.++++||+. |.+ .... ....+.+.+. ++||+++|....
T Consensus 55 ~~~~~l~-~~~vdgiI~~-~~~---~~~~----~~~~~~~~~~----~iPvV~~~~~~~ 100 (293)
T 3l6u_A 55 EQILEFV-HLKVDAIFIT-TLD---DVYI----GSAIEEAKKA----GIPVFAIDRMIR 100 (293)
T ss_dssp HHHHHHH-HTTCSEEEEE-CSC---TTTT----HHHHHHHHHT----TCCEEEESSCCC
T ss_pred HHHHHHH-HcCCCEEEEe-cCC---hHHH----HHHHHHHHHc----CCCEEEecCCCC
Confidence 4444444 5789999986 333 1111 1234455542 678888875443
No 128
>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}
Probab=35.00 E-value=1.4e+02 Score=23.82 Aligned_cols=53 Identities=11% Similarity=0.196 Sum_probs=34.6
Q ss_pred HHHHHHHHHhhCCCEEEEecccC-CCCCchHH--------------HHHHHHHHHHHhccCCCCCcEEEe
Q 030251 67 AEDFRSLISEFNLEGFIVGYPFN-RQQNAADA--------------VQVKLFIDDLSATKKLEDMKYAYW 121 (180)
Q Consensus 67 ~~~L~~li~e~~i~~iVVGlP~~-dG~~s~~~--------------~~v~~F~~~L~~~~~~~~lpV~~~ 121 (180)
+.++.+.+.+..+|.|-+|.|+. .-..++.- ..+-..++.+++. +|++|+.+.
T Consensus 33 ~~~~~~~l~~~G~D~IElG~P~sdP~adgp~i~~a~~~al~~G~~~~~~~~~v~~ir~~--~~~~Pi~~m 100 (262)
T 2ekc_A 33 SLKAFKEVLKNGTDILEIGFPFSDPVADGPTIQVAHEVALKNGIRFEDVLELSETLRKE--FPDIPFLLM 100 (262)
T ss_dssp HHHHHHHHHHTTCSEEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTSCEEEE
T ss_pred HHHHHHHHHHcCCCEEEECCCCCCcccccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhh--cCCCCEEEE
Confidence 45666777778999999999997 22233322 2334556777763 447888774
No 129
>4bc3_A Xylulose kinase; transferase, glucuronate xylulokinase pathway; HET: MSE EDO; 1.68A {Homo sapiens} PDB: 4bc2_A* 4bc4_A* 4bc5_A*
Probab=33.90 E-value=33 Score=30.48 Aligned_cols=27 Identities=22% Similarity=0.304 Sum_probs=21.7
Q ss_pred CCCCeEEEEecCCCeEEEEEecCCCce
Q 030251 23 SKRGRFLGLDVGDKYVGLSISDPKNKI 49 (180)
Q Consensus 23 ~~~~~iLalD~G~kriGvAvsd~~~~~ 49 (180)
+++..+||||+|+..+=.++-|..+.+
T Consensus 7 ~~~~~~lgID~GTts~Ka~l~d~~G~v 33 (538)
T 4bc3_A 7 APRRCCLGWDFSTQQVKVVAVDAELNV 33 (538)
T ss_dssp --CCEEEEEEECSSEEEEEEEETTCCE
T ss_pred CCCCEEEEEEEcCcCEEEEEECCCCCE
Confidence 456789999999999999998877644
No 130
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=33.80 E-value=1.3e+02 Score=23.93 Aligned_cols=48 Identities=10% Similarity=0.038 Sum_probs=31.2
Q ss_pred HHHHHHHHHh-hCCCEEEEecccCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEecccccH
Q 030251 67 AEDFRSLISE-FNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTS 127 (180)
Q Consensus 67 ~~~L~~li~e-~~i~~iVVGlP~~dG~~s~~~~~v~~F~~~L~~~~~~~~lpV~~~DEr~TT 127 (180)
.+.+..++.. +++++||+- | . ... ...+.+++.+. ++||+++|-....
T Consensus 50 ~~~i~~~i~~~~~vDgiIi~-~-~---~~~----~~~~~~~~~~~----giPvV~~~~~~~~ 98 (350)
T 3h75_A 50 LQQARELFQGRDKPDYLMLV-N-E---QYV----APQILRLSQGS----GIKLFIVNSPLTL 98 (350)
T ss_dssp HHHHHHHHHSSSCCSEEEEE-C-C---SSH----HHHHHHHHTTS----CCEEEEEESCCCT
T ss_pred HHHHHHHHhcCCCCCEEEEe-C-c---hhh----HHHHHHHHHhC----CCcEEEEcCCCCh
Confidence 4677788887 899999995 3 2 111 12345566652 7899998865543
No 131
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=33.74 E-value=98 Score=21.23 Aligned_cols=59 Identities=7% Similarity=-0.137 Sum_probs=37.7
Q ss_pred HHHHHHHHhhCCCEEEEecccCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEecccccHHHHHHHhc
Q 030251 68 EDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLN 135 (180)
Q Consensus 68 ~~L~~li~e~~i~~iVVGlP~~dG~~s~~~~~v~~F~~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l~ 135 (180)
.+..+.+.+..++.||+.+-+. +..+ ..+.+.|.+. .+.+||+++-...+...+...+.
T Consensus 37 ~~a~~~l~~~~~dliild~~l~-~~~g------~~~~~~l~~~--~~~~pii~ls~~~~~~~~~~~~~ 95 (155)
T 1qkk_A 37 TEALAGLSADFAGIVISDIRMP-GMDG------LALFRKILAL--DPDLPMILVTGHGDIPMAVQAIQ 95 (155)
T ss_dssp HHHHHTCCTTCCSEEEEESCCS-SSCH------HHHHHHHHHH--CTTSCEEEEECGGGHHHHHHHHH
T ss_pred HHHHHHHHhCCCCEEEEeCCCC-CCCH------HHHHHHHHhh--CCCCCEEEEECCCChHHHHHHHh
Confidence 4455566678899999997554 2222 2466666653 45899988876666555555543
No 132
>2ews_A Pantothenate kinase; PANK, structural genomics, structural genomics consortium, S transferase; HET: ANP; 2.05A {Staphylococcus aureus subsp} SCOP: c.55.1.14
Probab=33.23 E-value=1.2e+02 Score=25.00 Aligned_cols=51 Identities=12% Similarity=0.242 Sum_probs=29.7
Q ss_pred CCeEEEEecCCCeEEEEEecCCCceeccceeeeCCCCChhhHHHHHHHHHHhhCCCEEEE
Q 030251 25 RGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKKNTIDLMAEDFRSLISEFNLEGFIV 84 (180)
Q Consensus 25 ~~~iLalD~G~kriGvAvsd~~~~~a~Pl~~i~~~~~~~~~~~~~L~~li~e~~i~~iVV 84 (180)
....+|||+|...+=+++.+....+.. ..++.. +++..+.+...++..+++
T Consensus 19 ~~~~iGIDiGsTt~K~V~~~~~~i~~~---~~~~~~------~~~~l~~l~~~~~~~i~~ 69 (287)
T 2ews_A 19 SHMKVGIDAGGTLIKIVQEQDNQRTFK---TELTKN------IDQVVEWLNQQQIEKLCL 69 (287)
T ss_dssp --CEEEEEECSSEEEEEEECSSCEEEE---EEEGGG------HHHHHHHHHTSCCSEEEE
T ss_pred CCeEEEEEEChhhEEEEEEcCCEEEEE---EechHH------HHHHHHHhcccCceEEEE
Confidence 367899999999999999865443322 333321 233344445455655544
No 133
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=32.25 E-value=1.7e+02 Score=22.33 Aligned_cols=43 Identities=9% Similarity=0.149 Sum_probs=26.0
Q ss_pred HHHHHHHHhhCCCEEEEecccCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEeccc
Q 030251 68 EDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEG 124 (180)
Q Consensus 68 ~~L~~li~e~~i~~iVVGlP~~dG~~s~~~~~v~~F~~~L~~~~~~~~lpV~~~DEr 124 (180)
..+.+.+.+.++++||+- |.. .+. .+.+.+.+. ++||+++|..
T Consensus 59 ~~~~~~~~~~~vdgiIi~-~~~---~~~------~~~~~l~~~----~iPvV~~~~~ 101 (292)
T 3k4h_A 59 NGVVKMVQGRQIGGIILL-YSR---END------RIIQYLHEQ----NFPFVLIGKP 101 (292)
T ss_dssp HHHHHHHHTTCCCEEEES-CCB---TTC------HHHHHHHHT----TCCEEEESCC
T ss_pred HHHHHHHHcCCCCEEEEe-CCC---CCh------HHHHHHHHC----CCCEEEECCC
Confidence 556666777899999984 322 111 234456552 6788777644
No 134
>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}
Probab=32.13 E-value=1.3e+02 Score=24.67 Aligned_cols=54 Identities=15% Similarity=0.169 Sum_probs=38.9
Q ss_pred HHHHHHHHHhhCCCEEEEecccC-CCCCchHHHHHHHHHHHHHhccCCCCCcEEEeccccc
Q 030251 67 AEDFRSLISEFNLEGFIVGYPFN-RQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFT 126 (180)
Q Consensus 67 ~~~L~~li~e~~i~~iVVGlP~~-dG~~s~~~~~v~~F~~~L~~~~~~~~lpV~~~DEr~T 126 (180)
.+.|.+.++..++..|++-.|-| .|..-+.. .++++++..++. ++ .+.+||-++
T Consensus 171 ~~~l~~~l~~~~~~~v~l~~p~nptG~~~~~~-~l~~i~~~a~~~----~~-~li~De~~~ 225 (437)
T 3g0t_A 171 REKLESYLQTGQFCSIIYSNPNNPTWQCMTDE-ELRIIGELATKH----DV-IVIEDLAYF 225 (437)
T ss_dssp HHHHHHHHTTTCCCEEEEESSCTTTCCCCCHH-HHHHHHHHHHHT----TC-EEEEECTTT
T ss_pred HHHHHHHHhcCCceEEEEeCCCCCCCCcCCHH-HHHHHHHHHHHC----Cc-EEEEEcchh
Confidence 68889988777899999999987 88765433 356666666652 43 566788775
No 135
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=32.10 E-value=22 Score=25.18 Aligned_cols=21 Identities=19% Similarity=0.279 Sum_probs=17.5
Q ss_pred HHHHHHH-HHhhCCCEEEEecc
Q 030251 67 AEDFRSL-ISEFNLEGFIVGYP 87 (180)
Q Consensus 67 ~~~L~~l-i~e~~i~~iVVGlP 87 (180)
.+.|.+. +++++++.||+|-.
T Consensus 107 ~~~I~~~~a~~~~~DlIV~G~~ 128 (156)
T 3fg9_A 107 DDVILEQVIPEFKPDLLVTGAD 128 (156)
T ss_dssp HHHHHHTHHHHHCCSEEEEETT
T ss_pred HHHHHHHHHHhcCCCEEEECCC
Confidence 5788887 88899999999954
No 136
>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri}
Probab=31.88 E-value=71 Score=22.18 Aligned_cols=46 Identities=17% Similarity=0.274 Sum_probs=32.5
Q ss_pred HHHHHHHHhhCCCEEEEecccCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEecc
Q 030251 68 EDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNE 123 (180)
Q Consensus 68 ~~L~~li~e~~i~~iVVGlP~~dG~~s~~~~~v~~F~~~L~~~~~~~~lpV~~~DE 123 (180)
+.|.+++++++++.++|.+|.. + ....+++.+.+.+. +++|.++..
T Consensus 55 ~~l~~~~~~~~id~viia~~~~----~--~~~~~~i~~~l~~~----gv~v~~vP~ 100 (141)
T 3nkl_A 55 KYLERLIKKHCISTVLLAVPSA----S--QVQKKVIIESLAKL----HVEVLTIPN 100 (141)
T ss_dssp GGHHHHHHHHTCCEEEECCTTS----C--HHHHHHHHHHHHTT----TCEEEECCC
T ss_pred HHHHHHHHHCCCCEEEEeCCCC----C--HHHHHHHHHHHHHc----CCeEEECCC
Confidence 4567888999999999997644 1 13445677778763 778877754
No 137
>3k1y_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, CDR100D; 2.50A {Corynebacterium diphtheriae} PDB: 3k20_A
Probab=31.61 E-value=70 Score=24.46 Aligned_cols=49 Identities=24% Similarity=0.320 Sum_probs=32.7
Q ss_pred HHHHHHHHHhhCCCEEEEecccCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEe
Q 030251 67 AEDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYW 121 (180)
Q Consensus 67 ~~~L~~li~e~~i~~iVVGlP~~dG~~s~~~~~v~~F~~~L~~~~~~~~lpV~~~ 121 (180)
+.++.+.+. ..|+||+|-|..+++.+.+. +.|.+++... .+.+-|+.++
T Consensus 76 ~~~~~~~i~--~AD~ivi~sP~Y~~~~~~~l---K~~iD~~~~~-~l~gK~~~~v 124 (191)
T 3k1y_A 76 LEEITSALS--ASDGLVVATPVFKASYTGLF---KMFFDILDTD-ALTGMPTIIA 124 (191)
T ss_dssp HHHHHHHHH--HCSEEEEEEECBTTBSCHHH---HHHHHHSCTT-TTTTCEEEEE
T ss_pred HHHHHHHHH--HCCEEEEEcCccCCcCcHHH---HHHHHHhhhh-hcCCCEEEEE
Confidence 455555555 58999999999977777644 4677777532 3456666554
No 138
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=31.21 E-value=1.2e+02 Score=20.38 Aligned_cols=61 Identities=5% Similarity=-0.087 Sum_probs=37.6
Q ss_pred HHHHHHHHhhCCCEEEEecccCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEecccccHHHHHHHhc
Q 030251 68 EDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLN 135 (180)
Q Consensus 68 ~~L~~li~e~~i~~iVVGlP~~dG~~s~~~~~v~~F~~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l~ 135 (180)
++..+.+.++.++.|++.+-+. |..+ ..+.+.|++....+.+||+++-...+...+.+.+.
T Consensus 38 ~~al~~~~~~~~dlvl~D~~lp-~~~g------~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~~~~ 98 (136)
T 3t6k_A 38 EEALQQIYKNLPDALICDVLLP-GIDG------YTLCKRVRQHPLTKTLPILMLTAQGDISAKIAGFE 98 (136)
T ss_dssp HHHHHHHHHSCCSEEEEESCCS-SSCH------HHHHHHHHHSGGGTTCCEEEEECTTCHHHHHHHHH
T ss_pred HHHHHHHHhCCCCEEEEeCCCC-CCCH------HHHHHHHHcCCCcCCccEEEEecCCCHHHHHHHHh
Confidence 3445566778999999986544 2222 24666666531134789988877666655555443
No 139
>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}
Probab=31.04 E-value=90 Score=25.78 Aligned_cols=54 Identities=11% Similarity=0.042 Sum_probs=36.6
Q ss_pred HHHHHHHHHhhCCCEEEEecccC-CCCCchHHHHHHHHHHHHHhccCCCCCcEEEeccccc
Q 030251 67 AEDFRSLISEFNLEGFIVGYPFN-RQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFT 126 (180)
Q Consensus 67 ~~~L~~li~e~~i~~iVVGlP~~-dG~~s~~~~~v~~F~~~L~~~~~~~~lpV~~~DEr~T 126 (180)
++.|.+.+.+.++..|++--|-+ .|..-+. ...++.++..++. ++ ++.+||-++
T Consensus 183 ~~~le~~i~~~~~~~vil~~p~nptG~~~~~-~~l~~l~~l~~~~----~~-~li~De~~~ 237 (421)
T 3l8a_A 183 FEQLEKDIIDNNVKIYLLCSPHNPGGRVWDN-DDLIKIAELCKKH----GV-ILVSDEIHQ 237 (421)
T ss_dssp HHHHHHHHHHTTEEEEEEESSBTTTTBCCCH-HHHHHHHHHHHHH----TC-EEEEECTTT
T ss_pred HHHHHHHhhccCCeEEEECCCCCCCCCcCCH-HHHHHHHHHHHHc----CC-EEEEEcccc
Confidence 58888888877899999988877 7755322 2355666666652 44 445788754
No 140
>2xws_A Sirohydrochlorin cobaltochelatase; lyase, beta-alpha-beta, cobalamin biosynthesis, metal-bindin parallel beta sheet; 1.60A {Archaeoglobus fulgidus} PDB: 2dj5_A* 2xwq_A
Probab=30.98 E-value=1.1e+02 Score=21.27 Aligned_cols=49 Identities=10% Similarity=-0.040 Sum_probs=30.0
Q ss_pred CEEEEecccCCCCCchHH-HHHHHHHHHHHhccCCCCCcE--EEec--ccccHHHHHHHh
Q 030251 80 EGFIVGYPFNRQQNAADA-VQVKLFIDDLSATKKLEDMKY--AYWN--EGFTSKGVELLL 134 (180)
Q Consensus 80 ~~iVVGlP~~dG~~s~~~-~~v~~F~~~L~~~~~~~~lpV--~~~D--Er~TT~~A~~~l 134 (180)
..++|| .|+..+.+ ..+..+++.|++. ++..+| -|++ ..-|-.+|-+.|
T Consensus 5 alllv~----HGS~~~~~~~~~~~la~~l~~~--~~~~~V~~a~le~~~~Psl~~~l~~l 58 (133)
T 2xws_A 5 GLVIVG----HGSQLNHYREVMELHRKRIEES--GAFDEVKIAFAARKRRPMPDEAIREM 58 (133)
T ss_dssp EEEEEE----CSCCCHHHHHHHHHHHHHHHHH--TSSSEEEEEESSTTCSSCHHHHHHHC
T ss_pred eEEEEE----CCCCCHHHHHHHHHHHHHHHhh--CCCCcEEeeeeecCCCCCHHHHHHHc
Confidence 357778 78877544 3567888888764 333444 4555 555556665555
No 141
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=30.77 E-value=41 Score=23.07 Aligned_cols=21 Identities=10% Similarity=0.146 Sum_probs=19.2
Q ss_pred HHHHHHHHHhhCCCEEEEecc
Q 030251 67 AEDFRSLISEFNLEGFIVGYP 87 (180)
Q Consensus 67 ~~~L~~li~e~~i~~iVVGlP 87 (180)
.+.|.+..++++++.||+|-.
T Consensus 95 ~~~I~~~a~~~~~dliV~G~~ 115 (143)
T 3fdx_A 95 KDKILALAKSLPADLVIIASH 115 (143)
T ss_dssp HHHHHHHHHHTTCSEEEEESS
T ss_pred HHHHHHHHHHhCCCEEEEeCC
Confidence 689999999999999999965
No 142
>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3
Probab=30.67 E-value=74 Score=25.77 Aligned_cols=54 Identities=7% Similarity=0.034 Sum_probs=35.4
Q ss_pred HHHHHHHHHhhCCCEEEEecccC-CCCCchHHHHHHHHHHHHHhccCCCCCcEEEeccccc
Q 030251 67 AEDFRSLISEFNLEGFIVGYPFN-RQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFT 126 (180)
Q Consensus 67 ~~~L~~li~e~~i~~iVVGlP~~-dG~~s~~~~~v~~F~~~L~~~~~~~~lpV~~~DEr~T 126 (180)
++.|.+.+.+.++..|++--|-| .|..-+. ...+++++..++. ++ .+.+||-++
T Consensus 151 ~~~l~~~l~~~~~~~v~l~~p~nptG~~~~~-~~l~~l~~~~~~~----~~-~li~De~~~ 205 (390)
T 1d2f_A 151 MGKLEAVLAKPECKIMLLCSPQNPTGKVWTC-DELEIMADLCERH----GV-RVISDEIHM 205 (390)
T ss_dssp HHHHHHHHTSTTEEEEEEESSCTTTCCCCCT-THHHHHHHHHHHT----TC-EEEEECTTT
T ss_pred HHHHHHHhccCCCeEEEEeCCCCCCCcCcCH-HHHHHHHHHHHHc----CC-EEEEEcccc
Confidence 57888888766788888888877 7876442 2445566555552 44 345676654
No 143
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=30.60 E-value=99 Score=20.98 Aligned_cols=50 Identities=4% Similarity=0.017 Sum_probs=31.3
Q ss_pred HHHHHHHHhhCCCEEEEecccCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEeccccc
Q 030251 68 EDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFT 126 (180)
Q Consensus 68 ~~L~~li~e~~i~~iVVGlP~~dG~~s~~~~~v~~F~~~L~~~~~~~~lpV~~~DEr~T 126 (180)
.+..+.+.+..++.+++.+-+. +..+ ..+.+.|++. .+.+||+++-..-+
T Consensus 39 ~~al~~~~~~~~dlvllD~~lp-~~~g------~~l~~~l~~~--~~~~~ii~ls~~~~ 88 (141)
T 3cu5_A 39 INAIQIALKHPPNVLLTDVRMP-RMDG------IELVDNILKL--YPDCSVIFMSGYSD 88 (141)
T ss_dssp HHHHHHHTTSCCSEEEEESCCS-SSCH------HHHHHHHHHH--CTTCEEEEECCSTT
T ss_pred HHHHHHHhcCCCCEEEEeCCCC-CCCH------HHHHHHHHhh--CCCCcEEEEeCCCc
Confidence 3444566778899999997554 2222 2466667653 45789988754433
No 144
>3hh8_A Metal ABC transporter substrate-binding lipoprote; lipoprotein, metal binding, cell membrane, copper transport, iron; 1.87A {Streptococcus pyogenes serotype M1} SCOP: c.92.2.2 PDB: 1psz_A 3ztt_A
Probab=30.52 E-value=76 Score=25.95 Aligned_cols=43 Identities=9% Similarity=0.139 Sum_probs=30.6
Q ss_pred chHHHHHHHHHHHHHhccCCCCCcEEEecccccHHHHHHHhccCCCC
Q 030251 94 AADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLH 140 (180)
Q Consensus 94 s~~~~~v~~F~~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l~~~g~~ 140 (180)
.+..+.+.++.+.+++. +++++|++..+++..++..-++.|.+
T Consensus 215 eps~~~l~~l~~~ik~~----~v~~if~e~~~~~~~~~~ia~~~g~~ 257 (294)
T 3hh8_A 215 EGTPDQISSLIEKLKVI----KPSALFVESSVDRRPMETVSKDSGIP 257 (294)
T ss_dssp CCCHHHHHHHHHHHHHS----CCSCEEEETTSCSHHHHHHHHHHCCC
T ss_pred CCCHHHHHHHHHHHHHc----CCCEEEEeCCCCcHHHHHHHHHhCCc
Confidence 34567777888888873 78888888888888777665555543
No 145
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=30.43 E-value=1.4e+02 Score=22.90 Aligned_cols=43 Identities=12% Similarity=0.262 Sum_probs=23.6
Q ss_pred HHHHHHHHhhCCCEEEEecccCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEecc
Q 030251 68 EDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNE 123 (180)
Q Consensus 68 ~~L~~li~e~~i~~iVVGlP~~dG~~s~~~~~v~~F~~~L~~~~~~~~lpV~~~DE 123 (180)
+.+..++ ++++++||+- |... ... ....+.+.+. ++||+++|.
T Consensus 48 ~~i~~l~-~~~vdgiIi~-~~~~---~~~----~~~~~~~~~~----~iPvV~~~~ 90 (283)
T 2ioy_A 48 SNVEDLI-QQKVDVLLIN-PVDS---DAV----VTAIKEANSK----NIPVITIDR 90 (283)
T ss_dssp HHHHHHH-HTTCSEEEEC-CSST---TTT----HHHHHHHHHT----TCCEEEESS
T ss_pred HHHHHHH-HcCCCEEEEe-CCch---hhh----HHHHHHHHHC----CCeEEEecC
Confidence 4455555 6789999984 4331 110 1123345442 678877763
No 146
>3mfq_A TROA, high-affinity zinc uptake system protein ZNUA; metal binding protein; 2.60A {Streptococcus suis} SCOP: c.92.2.0
Probab=29.90 E-value=1e+02 Score=25.01 Aligned_cols=37 Identities=5% Similarity=0.039 Sum_probs=28.9
Q ss_pred chHHHHHHHHHHHHHhccCCCCCcEEEecccccHHHHHHHh
Q 030251 94 AADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLL 134 (180)
Q Consensus 94 s~~~~~v~~F~~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l 134 (180)
.+..+.+.++.+.+++. +++++|+++.+++..++.+.
T Consensus 195 eps~~~l~~l~~~ik~~----~v~~if~e~~~~~~~~~~l~ 231 (282)
T 3mfq_A 195 EVANSDMIETVNLIIDH----NIKAIFTESTTNPERMKKLQ 231 (282)
T ss_dssp CCCHHHHHHHHHHHHHH----TCCEEECBTTSCTHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHc----CCCEEEEeCCCChHHHHHHH
Confidence 34577888888888874 78999998888888777653
No 147
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=29.85 E-value=1e+02 Score=23.96 Aligned_cols=18 Identities=17% Similarity=0.386 Sum_probs=13.8
Q ss_pred HHHHHHHHhhCCCEEEEe
Q 030251 68 EDFRSLISEFNLEGFIVG 85 (180)
Q Consensus 68 ~~L~~li~e~~i~~iVVG 85 (180)
..+.+.+...++++||+-
T Consensus 55 ~~~~~~l~~~~vdGiIi~ 72 (294)
T 3qk7_A 55 QSLIHLVETRRVDALIVA 72 (294)
T ss_dssp HHHHHHHHHTCCSEEEEC
T ss_pred HHHHHHHHcCCCCEEEEe
Confidence 556677777889999885
No 148
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=29.75 E-value=44 Score=22.91 Aligned_cols=22 Identities=14% Similarity=0.015 Sum_probs=19.6
Q ss_pred HHHHHHHHHhhCCCEEEEeccc
Q 030251 67 AEDFRSLISEFNLEGFIVGYPF 88 (180)
Q Consensus 67 ~~~L~~li~e~~i~~iVVGlP~ 88 (180)
.+.|.+..++++++.||+|-.-
T Consensus 88 ~~~I~~~a~~~~~dliV~G~~~ 109 (137)
T 2z08_A 88 AEAILQAARAEKADLIVMGTRG 109 (137)
T ss_dssp HHHHHHHHHHTTCSEEEEESSC
T ss_pred HHHHHHHHHHcCCCEEEECCCC
Confidence 6899999999999999999653
No 149
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=29.59 E-value=1.3e+02 Score=20.22 Aligned_cols=61 Identities=10% Similarity=0.024 Sum_probs=39.0
Q ss_pred HHHHHHHHhhCCCEEEEecccCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEecccccHHHHHHHhc
Q 030251 68 EDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLN 135 (180)
Q Consensus 68 ~~L~~li~e~~i~~iVVGlP~~dG~~s~~~~~v~~F~~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l~ 135 (180)
.+..+.+.+..++.||+.+-+. +..+ ..+.+.|++....+.+||+++-...+.....+.+.
T Consensus 42 ~~a~~~l~~~~~dlii~d~~l~-~~~g------~~~~~~l~~~~~~~~~pii~ls~~~~~~~~~~~~~ 102 (147)
T 2zay_A 42 IEAVPVAVKTHPHLIITEANMP-KISG------MDLFNSLKKNPQTASIPVIALSGRATAKEEAQLLD 102 (147)
T ss_dssp HHHHHHHHHHCCSEEEEESCCS-SSCH------HHHHHHHHTSTTTTTSCEEEEESSCCHHHHHHHHH
T ss_pred HHHHHHHHcCCCCEEEEcCCCC-CCCH------HHHHHHHHcCcccCCCCEEEEeCCCCHHHHHHHHh
Confidence 4555666778899999997554 2222 25677777521245889988877666655555443
No 150
>1cza_N Hexokinase type I; structurally homologous domains, transferase; HET: GLC G6P ADP; 1.90A {Homo sapiens} SCOP: c.55.1.3 c.55.1.3 c.55.1.3 c.55.1.3 PDB: 1dgk_N* 1hkb_A* 1qha_A* 1hkc_A* 1bg3_A* 2nzt_A*
Probab=29.42 E-value=54 Score=31.46 Aligned_cols=25 Identities=20% Similarity=0.462 Sum_probs=21.3
Q ss_pred CCCeEEEEecCCCeEEEEEecCCCc
Q 030251 24 KRGRFLGLDVGDKYVGLSISDPKNK 48 (180)
Q Consensus 24 ~~~~iLalD~G~kriGvAvsd~~~~ 48 (180)
..|.+||||+|..++=+++.+..+.
T Consensus 76 E~G~~laiDlGGTnirv~lv~~~G~ 100 (917)
T 1cza_N 76 EKGDFIALDLGGSSFRILRVQVNHE 100 (917)
T ss_dssp CCEEEEEEEESSSSEEEEEEEEEEE
T ss_pred CcceEEEEEeCCCeEEEEEEEecCC
Confidence 3589999999999999999987653
No 151
>1o13_A Probable NIFB protein; ribonuclease H-like motif fold, structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.83A {Thermotoga maritima} SCOP: c.55.5.1 PDB: 1t3v_A
Probab=29.01 E-value=1.1e+02 Score=22.02 Aligned_cols=54 Identities=19% Similarity=-0.013 Sum_probs=36.9
Q ss_pred HHHHHHHhhCCCEEEEecccCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEecccccHHHHHHHhccCCC
Q 030251 69 DFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDL 139 (180)
Q Consensus 69 ~L~~li~e~~i~~iVVGlP~~dG~~s~~~~~v~~F~~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l~~~g~ 139 (180)
.+.+++.+.+++.||+| ..++ ...+.|.+. ++.|+...+ .|-.+|-+.|.+..+
T Consensus 67 ~~a~~L~~~gv~vVI~g------~IG~------~a~~~L~~~----GI~v~~~~~-g~i~eal~~~~~G~L 120 (136)
T 1o13_A 67 AVPNFVKEKGAELVIVR------GIGR------RAIAAFEAM----GVKVIKGAS-GTVEEVVNQYLSGQL 120 (136)
T ss_dssp CHHHHHHHTTCSEEECS------CCCH------HHHHHHHHT----TCEEECSCC-SBHHHHHHHHHTTC-
T ss_pred HHHHHHHHCCCCEEEEC------CCCH------HHHHHHHHC----CCEEEecCC-CCHHHHHHHHHhCCC
Confidence 45666777999999999 4554 344567763 788887655 577777776654333
No 152
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=28.92 E-value=41 Score=23.44 Aligned_cols=9 Identities=11% Similarity=0.357 Sum_probs=3.7
Q ss_pred HHHHHHHHh
Q 030251 101 KLFIDDLSA 109 (180)
Q Consensus 101 ~~F~~~L~~ 109 (180)
+.+.+.|++
T Consensus 97 ~~l~~~l~~ 105 (138)
T 5nul_A 97 RDFEERMNG 105 (138)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 344444443
No 153
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=28.81 E-value=1.6e+02 Score=22.15 Aligned_cols=46 Identities=9% Similarity=0.125 Sum_probs=25.3
Q ss_pred HHHHHHHHHhhCCCEEEEecccCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEeccc
Q 030251 67 AEDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEG 124 (180)
Q Consensus 67 ~~~L~~li~e~~i~~iVVGlP~~dG~~s~~~~~v~~F~~~L~~~~~~~~lpV~~~DEr 124 (180)
.+.+..++...++++||+. |.+ .... ..+.+.+.+. ++||+++|..
T Consensus 48 ~~~i~~l~~~~~vdgii~~-~~~-~~~~------~~~~~~~~~~----~ipvV~~~~~ 93 (276)
T 3ksm_A 48 IQILSYHLSQAPPDALILA-PNS-AEDL------TPSVAQYRAR----NIPVLVVDSD 93 (276)
T ss_dssp HHHHHHHHHHSCCSEEEEC-CSS-TTTT------HHHHHHHHHT----TCCEEEESSC
T ss_pred HHHHHHHHHhCCCCEEEEe-CCC-HHHH------HHHHHHHHHC----CCcEEEEecC
Confidence 3556666654449999986 222 1111 1344556552 6777777643
No 154
>2wfb_A Putative uncharacterized protein ORP; mixed molybdenum-copper sulphide cluster, alpha and beta protein, biosynthetic protein; 2.00A {Desulfovibrio gigas}
Probab=28.76 E-value=1.1e+02 Score=21.04 Aligned_cols=55 Identities=13% Similarity=0.082 Sum_probs=38.4
Q ss_pred HHHHHHHhhCCCEEEEecccCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEecccccHHHHHHHhccCCC
Q 030251 69 DFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDL 139 (180)
Q Consensus 69 ~L~~li~e~~i~~iVVGlP~~dG~~s~~~~~v~~F~~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l~~~g~ 139 (180)
.+.+++.+.+++.|++| ..++ .....|.+. ++.|+...+..|-.+|-+.|.+..+
T Consensus 58 ~~~~~l~~~gv~~vi~~------~iG~------~a~~~L~~~----GI~v~~~~~g~~i~eal~~~~~g~L 112 (120)
T 2wfb_A 58 NAAQVLAKSGAGVLLTG------YVGP------KAFQALQAA----GIKVGQDLEGLTVRQAVQRFLDGQV 112 (120)
T ss_dssp HHHHHHHHHTEEEEECS------CCCH------HHHHHHHHT----TCEEECCCTTSBHHHHHHHHHTTCS
T ss_pred HHHHHHHHCCCCEEEEC------CCCH------hHHHHHHHC----CCEEEEcCCCCcHHHHHHHHHcCCC
Confidence 56677777999999999 4554 344567763 7888887665477888777665443
No 155
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=28.34 E-value=2.1e+02 Score=22.19 Aligned_cols=41 Identities=7% Similarity=0.167 Sum_probs=22.7
Q ss_pred HHHHhhCCCEEEEecccCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEeccc
Q 030251 72 SLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEG 124 (180)
Q Consensus 72 ~li~e~~i~~iVVGlP~~dG~~s~~~~~v~~F~~~L~~~~~~~~lpV~~~DEr 124 (180)
+.+...++++||+- |.+ .... ..+.+.+.+. ++||+++|..
T Consensus 52 ~~l~~~~vdgiIi~-~~~---~~~~----~~~~~~~~~~----~iPvV~~~~~ 92 (313)
T 3m9w_A 52 ENMINRGVDVLVII-PYN---GQVL----SNVVKEAKQE----GIKVLAYDRM 92 (313)
T ss_dssp HHHHHTTCSEEEEE-CSS---TTSC----HHHHHHHHTT----TCEEEEESSC
T ss_pred HHHHHcCCCEEEEe-CCC---hhhh----HHHHHHHHHC----CCeEEEECCc
Confidence 33445789999987 222 1110 1244556542 6788777754
No 156
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=28.28 E-value=1.3e+02 Score=19.87 Aligned_cols=59 Identities=8% Similarity=0.135 Sum_probs=36.8
Q ss_pred HHHHHHHHhhCCCEEEEecccC-C---CCCchHHHHHHHHHHHHHhccCCCCCcEEEecccccHHHHHHHh
Q 030251 68 EDFRSLISEFNLEGFIVGYPFN-R---QQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLL 134 (180)
Q Consensus 68 ~~L~~li~e~~i~~iVVGlP~~-d---G~~s~~~~~v~~F~~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l 134 (180)
.+..+.+.+..++.||+.+-+. + +..+ ..+.+.|++. .+.+||+++-..-+...+.+.+
T Consensus 37 ~~a~~~l~~~~~dlvi~d~~~~~~~~~~~~g------~~~~~~l~~~--~~~~~ii~ls~~~~~~~~~~~~ 99 (140)
T 2qr3_A 37 VSLSTVLREENPEVVLLDMNFTSGINNGNEG------LFWLHEIKRQ--YRDLPVVLFTAYADIDLAVRGI 99 (140)
T ss_dssp HHHHHHHHHSCEEEEEEETTTTC-----CCH------HHHHHHHHHH--CTTCCEEEEEEGGGHHHHHHHH
T ss_pred HHHHHHHHcCCCCEEEEeCCcCCCCCCCccH------HHHHHHHHhh--CcCCCEEEEECCCCHHHHHHHH
Confidence 4555667778899999997553 1 2222 2566667653 4588988886655555555444
No 157
>3kax_A Aminotransferase, classes I and II; PLP, C-S lyase, transf structural genomics, center for structural genomics of INFE diseases, csgid; HET: LLP MSE PLP; 1.70A {Bacillus anthracis str} PDB: 3t32_A*
Probab=28.22 E-value=1.3e+02 Score=23.86 Aligned_cols=53 Identities=8% Similarity=0.016 Sum_probs=36.1
Q ss_pred HHHHHHHHHhhCCCEEEEecccC-CCCCchHHHHHHHHHHHHHhccCCCCCcEEEeccccc
Q 030251 67 AEDFRSLISEFNLEGFIVGYPFN-RQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFT 126 (180)
Q Consensus 67 ~~~L~~li~e~~i~~iVVGlP~~-dG~~s~~~~~v~~F~~~L~~~~~~~~lpV~~~DEr~T 126 (180)
++.|.+.+ ..++..|++--|-| .|..-+.. .+++.++..++. ++ .+.+||-++
T Consensus 146 ~~~l~~~l-~~~~~~v~i~~p~nptG~~~~~~-~l~~l~~~~~~~----~~-~li~De~~~ 199 (383)
T 3kax_A 146 FEHLEKQF-QQGVKLMLLCSPHNPIGRVWKKE-ELTKLGSLCTKY----NV-IVVADEIHS 199 (383)
T ss_dssp HHHHHHHH-TTTCCEEEEESSBTTTTBCCCHH-HHHHHHHHHHHH----TC-EEEEECTTT
T ss_pred HHHHHHHh-CcCCeEEEEeCCCCCCCcCcCHH-HHHHHHHHHHHC----CC-EEEEEcccc
Confidence 57888888 56899999998988 88765433 355666656552 43 455688765
No 158
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=27.98 E-value=1.1e+02 Score=24.45 Aligned_cols=54 Identities=11% Similarity=0.052 Sum_probs=37.2
Q ss_pred HHHHHHHHHhhCCCEEEEecccC-CCCCchHHHHHHHHHHHHHhccCCCCCcEEEeccccc
Q 030251 67 AEDFRSLISEFNLEGFIVGYPFN-RQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFT 126 (180)
Q Consensus 67 ~~~L~~li~e~~i~~iVVGlP~~-dG~~s~~~~~v~~F~~~L~~~~~~~~lpV~~~DEr~T 126 (180)
++.|.+.+.+.++..|++--|-| .|..-+. ..+++.++..++. ++ .+.+||-++
T Consensus 149 ~~~l~~~l~~~~~~~v~i~~p~nptG~~~~~-~~l~~i~~~~~~~----~~-~li~De~~~ 203 (391)
T 3dzz_A 149 WADLEEKLATPSVRMMVFCNPHNPIGYAWSE-EEVKRIAELCAKH----QV-LLISDEIHG 203 (391)
T ss_dssp HHHHHHHHTSTTEEEEEEESSBTTTTBCCCH-HHHHHHHHHHHHT----TC-EEEEECTTT
T ss_pred HHHHHHHHhccCceEEEEECCCCCCCcccCH-HHHHHHHHHHHHC----CC-EEEEecccc
Confidence 58889988877899999998988 7776332 2355666666652 44 455787765
No 159
>2yx6_A Hypothetical protein PH0822; structural genomics, unknown function, NPPSFA, national PROJ protein structural and functional analyses; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=27.67 E-value=1.4e+02 Score=20.61 Aligned_cols=54 Identities=9% Similarity=-0.083 Sum_probs=37.4
Q ss_pred HHHHHHHhhCCCEEEEecccCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEecccccHHHHHHHhccCCC
Q 030251 69 DFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDL 139 (180)
Q Consensus 69 ~L~~li~e~~i~~iVVGlP~~dG~~s~~~~~v~~F~~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l~~~g~ 139 (180)
.+.+++.+.+++.||+| ..++ ...+.|.+. ++.|+... ..|-.+|-+.|.+..+
T Consensus 54 ~~~~~L~~~gv~~vi~~------~iG~------~a~~~L~~~----GI~v~~~~-~~~v~eal~~~~~g~L 107 (121)
T 2yx6_A 54 DLPNFIKDHGAKIVLTY------GIGR------RAIEYFNSL----GISVVTGV-YGRISDVIKAFIGGKL 107 (121)
T ss_dssp HHHHHHHHTTCCEEECS------BCCH------HHHHHHHHT----TCEEECSB-CSBHHHHHHHHHTTCC
T ss_pred HHHHHHHHcCCCEEEEC------CCCH------hHHHHHHHC----CCEEEECC-CCCHHHHHHHHHcCCC
Confidence 56777778999999999 4554 344567763 78888764 4677788777665443
No 160
>3sim_A Protein, family 18 chitinase; family 18 plant chitinase, TIM barrel, chitin binding, glyco hydrolase, hydrolase; 2.10A {Crocus vernus}
Probab=27.58 E-value=1.2e+02 Score=24.30 Aligned_cols=55 Identities=13% Similarity=0.141 Sum_probs=30.9
Q ss_pred HHHHHHHHHhhCCCEEEEecccC--CCCCchHHHHHHHHHHHHHhccCCCCCcEEEeccc
Q 030251 67 AEDFRSLISEFNLEGFIVGYPFN--RQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEG 124 (180)
Q Consensus 67 ~~~L~~li~e~~i~~iVVGlP~~--dG~~s~~~~~v~~F~~~L~~~~~~~~lpV~~~DEr 124 (180)
.+...+....+.++.||+|+|-. +|...+.... ..-...+++...+.| |-+||=.
T Consensus 200 v~~~~~~g~~~p~~KlvlGlpa~~~~~g~~~~~~~-~~~l~~~k~~~~~gG--VmlW~a~ 256 (275)
T 3sim_A 200 LGYYNNAASKYKGGNVLISFSTGPHPGGLPVDKGF-FDAATSLKNKGKLHG--IAVWTAD 256 (275)
T ss_dssp HHHHHHHHHHTTTSCEEEEEECSSSCCSSCTTTTH-HHHHHHHHHTTCCCC--EEEECHH
T ss_pred HHHHHHHhccCChhheEEEEeecCCCCCcCChHHH-HHHHHHHHhCCCCCc--EEEEecC
Confidence 44555555566889999999987 3333322211 233344554333434 7888743
No 161
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=27.20 E-value=1.5e+02 Score=20.17 Aligned_cols=52 Identities=4% Similarity=0.098 Sum_probs=32.8
Q ss_pred hCCCEEEEecccCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEecccccHHHHHHHhc
Q 030251 77 FNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLN 135 (180)
Q Consensus 77 ~~i~~iVVGlP~~dG~~s~~~~~v~~F~~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l~ 135 (180)
..++.|++.+-+. |..+ ..+.+.|++....+.+||+++-...+...+.+.+.
T Consensus 60 ~~~dlillD~~lp-~~~g------~~l~~~l~~~~~~~~~piiils~~~~~~~~~~~~~ 111 (149)
T 1i3c_A 60 PRPNLILLDLNLP-KKDG------REVLAEIKQNPDLKRIPVVVLTTSHNEDDVIASYE 111 (149)
T ss_dssp CCCSEEEECSCCS-SSCH------HHHHHHHHHCTTTTTSCEEEEESCCCHHHHHHHHH
T ss_pred CCCCEEEEeCCCC-CCcH------HHHHHHHHhCcCcCCCeEEEEECCCChHHHHHHHH
Confidence 5799999986443 2222 25666777632235789988877666666666554
No 162
>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}
Probab=27.11 E-value=1.6e+02 Score=23.64 Aligned_cols=54 Identities=6% Similarity=0.008 Sum_probs=37.6
Q ss_pred HHHHHHHHHhhCCCEEEEecccC-CCCCchHHHHHHHHHHHHHhccCCCCCcEEEecccccH
Q 030251 67 AEDFRSLISEFNLEGFIVGYPFN-RQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTS 127 (180)
Q Consensus 67 ~~~L~~li~e~~i~~iVVGlP~~-dG~~s~~~~~v~~F~~~L~~~~~~~~lpV~~~DEr~TT 127 (180)
++.|.+.+.+ ++..|++-.|-| .|..-+. ...+++++..++. ++ .+++||-++.
T Consensus 169 ~~~l~~~l~~-~~~~v~~~~p~nptG~~~~~-~~l~~i~~~~~~~----~~-~li~Dea~~~ 223 (407)
T 3nra_A 169 LTGLEEAFKA-GARVFLFSNPNNPAGVVYSA-EEIGQIAALAARY----GA-TVIADQLYSR 223 (407)
T ss_dssp HHHHHHHHHT-TCCEEEEESSCTTTCCCCCH-HHHHHHHHHHHHH----TC-EEEEECTTTT
T ss_pred HHHHHHHHhh-CCcEEEEcCCCCCCCcccCH-HHHHHHHHHHHHc----CC-EEEEEccccc
Confidence 5888888876 788999999987 8876543 3356666666652 44 4567887763
No 163
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=27.04 E-value=1.3e+02 Score=19.35 Aligned_cols=58 Identities=9% Similarity=-0.062 Sum_probs=36.0
Q ss_pred HHHHHHHHhhCCCEEEEecccCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEecccccHHHHHHHh
Q 030251 68 EDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLL 134 (180)
Q Consensus 68 ~~L~~li~e~~i~~iVVGlP~~dG~~s~~~~~v~~F~~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l 134 (180)
.+..+.+.+..++.+++.+-+. +..+ ..+.+.|++. .+.+||+++-..-+...+.+.+
T Consensus 37 ~~a~~~~~~~~~dlil~D~~l~-~~~g------~~~~~~l~~~--~~~~~ii~~s~~~~~~~~~~~~ 94 (120)
T 1tmy_A 37 REAVEKYKELKPDIVTMDITMP-EMNG------IDAIKEIMKI--DPNAKIIVCSAMGQQAMVIEAI 94 (120)
T ss_dssp HHHHHHHHHHCCSEEEEECSCG-GGCH------HHHHHHHHHH--CTTCCEEEEECTTCHHHHHHHH
T ss_pred HHHHHHHHhcCCCEEEEeCCCC-CCcH------HHHHHHHHhh--CCCCeEEEEeCCCCHHHHHHHH
Confidence 3344556677899999986544 1112 2466677653 3578998886666655555544
No 164
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=26.97 E-value=1e+02 Score=20.77 Aligned_cols=59 Identities=7% Similarity=-0.047 Sum_probs=39.1
Q ss_pred HHHHHHHHh-hCCCEEEEecccCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEecccccHHHHHHHhc
Q 030251 68 EDFRSLISE-FNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLN 135 (180)
Q Consensus 68 ~~L~~li~e-~~i~~iVVGlP~~dG~~s~~~~~v~~F~~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l~ 135 (180)
+.+..+.+. ..++.||+.+-+. +.. ...+.+.|++. .+.+||+++-..-+...+.+.+.
T Consensus 56 ~~~~~~~~~~~~~dlvi~D~~l~-~~~------g~~~~~~l~~~--~~~~~ii~lt~~~~~~~~~~~~~ 115 (146)
T 4dad_A 56 AQIVQRTDGLDAFDILMIDGAAL-DTA------ELAAIEKLSRL--HPGLTCLLVTTDASSQTLLDAMR 115 (146)
T ss_dssp HHHTTCHHHHTTCSEEEEECTTC-CHH------HHHHHHHHHHH--CTTCEEEEEESCCCHHHHHHHHT
T ss_pred HHHHHHHhcCCCCCEEEEeCCCC-Ccc------HHHHHHHHHHh--CCCCcEEEEeCCCCHHHHHHHHH
Confidence 455566666 8899999996443 111 13566677763 46899998877777766666654
No 165
>1f07_A Coenzyme F420-dependent N5,N10- methylenetetrahydromethanopterin reductase; (beta, alpha)8 barrel; HET: MPO; 2.00A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.1.16.3
Probab=26.85 E-value=1.1e+02 Score=24.75 Aligned_cols=39 Identities=15% Similarity=0.310 Sum_probs=24.4
Q ss_pred hhhHHHHHHHHHHhhCCCEEEEecccC-CCCCchHHHHHHHHHHHH
Q 030251 63 IDLMAEDFRSLISEFNLEGFIVGYPFN-RQQNAADAVQVKLFIDDL 107 (180)
Q Consensus 63 ~~~~~~~L~~li~e~~i~~iVVGlP~~-dG~~s~~~~~v~~F~~~L 107 (180)
++.+.++|.++.+ ..++.++++.|.. + ..+.++.|++.+
T Consensus 279 p~~v~~~l~~~~~-~G~d~~~l~~~~~~~-----~~~~l~~~a~~V 318 (321)
T 1f07_A 279 PDEFIPKIEALGE-MGVTQYVAGSPIGPD-----KEKSIKLLGEVI 318 (321)
T ss_dssp HHHHHHHHHHHHH-TTCCEEEEEEEECSS-----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-cCCCEEEEcCCCCcc-----HHHHHHHHHHhh
Confidence 4556677777766 7788888866544 2 344555666544
No 166
>2xwp_A Sirohydrochlorin cobaltochelatase; lyase, beta-alpha-beta, cobalamin biosynthesis, metal-bindin parallel beta sheet; HET: SIR; 1.90A {Salmonella enterica} PDB: 1qgo_A*
Probab=26.79 E-value=1.2e+02 Score=24.18 Aligned_cols=55 Identities=15% Similarity=-0.002 Sum_probs=38.0
Q ss_pred CEEEEecccCCCCCchHHH--HHHHHHHHHHhccCCCCCcEEEe--------------c-ccccHHHHHHHhccCCCC
Q 030251 80 EGFIVGYPFNRQQNAADAV--QVKLFIDDLSATKKLEDMKYAYW--------------N-EGFTSKGVELLLNPLDLH 140 (180)
Q Consensus 80 ~~iVVGlP~~dG~~s~~~~--~v~~F~~~L~~~~~~~~lpV~~~--------------D-Er~TT~~A~~~l~~~g~~ 140 (180)
..++|| .||..+.+. .++.+++++++. +|+++|.+. + ..-|-.+|-+.|...|.+
T Consensus 4 aillv~----hGSr~~~~~~~~~~~~~~~v~~~--~p~~~V~~af~s~~i~~~l~~~~g~~~psi~~aL~~l~~~G~~ 75 (264)
T 2xwp_A 4 ALLVVS----FGTSYHDTCEKNIVACERDLAAS--CPDRDLFRAFTSGMIIRKLRQRDGIDIDTPLQALQKLAAQGYQ 75 (264)
T ss_dssp EEEEEE----CCCSCHHHHHHHHHHHHHHHHHH--CTTSEEEEEESCHHHHHHHHHHHCCCCCCHHHHHHHHHHHTCC
T ss_pred eEEEEE----CCCCCHHHHHHHHHHHHHHHHHH--CCCCeEEeehhhHHHHHHHHHhcCCCCCCHHHHHHHHHhCCCC
Confidence 357888 899887665 468899999874 778887644 1 235666776666665654
No 167
>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0
Probab=26.75 E-value=1.5e+02 Score=23.52 Aligned_cols=56 Identities=9% Similarity=0.133 Sum_probs=37.6
Q ss_pred HHHHHHHHHhhCCCEEEEecccC-CCCCchHHHHHHHHHHHHHhccCCCCCcEEEeccccc
Q 030251 67 AEDFRSLISEFNLEGFIVGYPFN-RQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFT 126 (180)
Q Consensus 67 ~~~L~~li~e~~i~~iVVGlP~~-dG~~s~~~~~v~~F~~~L~~~~~~~~lpV~~~DEr~T 126 (180)
++.|.+.+.++++..|++-.|-| .|..-+. ..++++++..++. .+++ .+.+||-++
T Consensus 146 ~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~-~~l~~i~~~~~~~--~~~~-~li~De~~~ 202 (367)
T 3euc_A 146 RGAMLAAMAEHQPAIVYLAYPNNPTGNLFDA-ADMEAIVRAAQGS--VCRS-LVVVDEAYQ 202 (367)
T ss_dssp HHHHHHHHHHHCCSEEEEESSCTTTCCCCCH-HHHHHHHHHTBTT--SCBC-EEEEECTTC
T ss_pred HHHHHHHhhccCCCEEEEcCCCCCCCCCCCH-HHHHHHHHhhhhc--CCCc-EEEEeCcch
Confidence 58889999888899999988888 7876543 2345555544431 0033 456798876
No 168
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=26.67 E-value=1.6e+02 Score=22.39 Aligned_cols=43 Identities=12% Similarity=0.199 Sum_probs=25.7
Q ss_pred HHHHHHHHhhCCCEEEEecccCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEecccc
Q 030251 68 EDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGF 125 (180)
Q Consensus 68 ~~L~~li~e~~i~~iVVGlP~~dG~~s~~~~~v~~F~~~L~~~~~~~~lpV~~~DEr~ 125 (180)
.++.+.+...++++||+- .... ..+.+.+.+. ++||+++|...
T Consensus 53 ~~~~~~l~~~~vdgiIi~----~~~~-------~~~~~~l~~~----~iPvV~i~~~~ 95 (276)
T 3jy6_A 53 KTLLRAIGSRGFDGLILQ----SFSN-------PQTVQEILHQ----QMPVVSVDREM 95 (276)
T ss_dssp HHHHHHHHTTTCSEEEEE----SSCC-------HHHHHHHHTT----SSCEEEESCCC
T ss_pred HHHHHHHHhCCCCEEEEe----cCCc-------HHHHHHHHHC----CCCEEEEeccc
Confidence 344444556789999987 2222 1345566652 67888877543
No 169
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=26.66 E-value=2e+02 Score=21.50 Aligned_cols=43 Identities=7% Similarity=0.088 Sum_probs=23.7
Q ss_pred HHHHHHHhhCCCEEEEecccC-CCCCchHHHHHHHHHHHHHhccCCCCCcEEEecccc
Q 030251 69 DFRSLISEFNLEGFIVGYPFN-RQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGF 125 (180)
Q Consensus 69 ~L~~li~e~~i~~iVVGlP~~-dG~~s~~~~~v~~F~~~L~~~~~~~~lpV~~~DEr~ 125 (180)
.+.+.+...++++||+- |.. .. . .+.+.+.+. ++||+++|...
T Consensus 49 ~~~~~l~~~~vdgiIi~-~~~~~~--~-------~~~~~~~~~----~iPvV~~~~~~ 92 (272)
T 3o74_A 49 QLQQLFRARRCDALFVA-SCLPPE--D-------DSYRELQDK----GLPVIAIDRRL 92 (272)
T ss_dssp HHHHHHHHTTCSEEEEC-CCCCSS--C-------CHHHHHHHT----TCCEEEESSCC
T ss_pred HHHHHHHHcCCCEEEEe-cCcccc--H-------HHHHHHHHc----CCCEEEEccCC
Confidence 34444555789999885 333 21 1 133445542 67777776544
No 170
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=26.62 E-value=2.2e+02 Score=21.92 Aligned_cols=43 Identities=12% Similarity=0.138 Sum_probs=26.0
Q ss_pred HHHHHHHHhhCCCEEEEecccCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEeccc
Q 030251 68 EDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEG 124 (180)
Q Consensus 68 ~~L~~li~e~~i~~iVVGlP~~dG~~s~~~~~v~~F~~~L~~~~~~~~lpV~~~DEr 124 (180)
.++.+.+.+.++++||+- |.. .+. ...+.+.+. ++||+++|..
T Consensus 58 ~~~~~~l~~~~vdGiI~~-~~~---~~~------~~~~~l~~~----~iPvV~i~~~ 100 (295)
T 3hcw_A 58 DEVYKMIKQRMVDAFILL-YSK---END------PIKQMLIDE----SMPFIVIGKP 100 (295)
T ss_dssp HHHHHHHHTTCCSEEEES-CCC---TTC------HHHHHHHHT----TCCEEEESCC
T ss_pred HHHHHHHHhCCcCEEEEc-Ccc---cCh------HHHHHHHhC----CCCEEEECCC
Confidence 455666777899999985 322 111 233445542 6788887744
No 171
>1ivn_A Thioesterase I; hydrolase, protease; 1.90A {Escherichia coli} SCOP: c.23.10.5 PDB: 1u8u_A* 1j00_A* 1jrl_A 1v2g_A*
Probab=26.57 E-value=1.8e+02 Score=20.79 Aligned_cols=52 Identities=12% Similarity=0.102 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhhCCCEEEEecccCC-C---CCchHHHHHHHHHHHHHhccCCCCCcEEEe
Q 030251 66 MAEDFRSLISEFNLEGFIVGYPFNR-Q---QNAADAVQVKLFIDDLSATKKLEDMKYAYW 121 (180)
Q Consensus 66 ~~~~L~~li~e~~i~~iVVGlP~~d-G---~~s~~~~~v~~F~~~L~~~~~~~~lpV~~~ 121 (180)
....+.+.+...+++.|||-+=.|| . +........+++.+.+++. +.+|+++
T Consensus 50 ~~~~~~~~~~~~~pd~Vii~~G~ND~~~~~~~~~~~~~l~~li~~~~~~----~~~vil~ 105 (190)
T 1ivn_A 50 GLARLPALLKQHQPRWVLVELGGNDGLRGFQPQQTEQTLRQILQDVKAA----NAEPLLM 105 (190)
T ss_dssp HHHHHHHHHHHHCCSEEEEECCTTTTSSSCCHHHHHHHHHHHHHHHHHT----TCEEEEE
T ss_pred HHHHHHHHHHhcCCCEEEEEeeccccccCCCHHHHHHHHHHHHHHHHHc----CCCEEEE
Confidence 3566666677777888888765552 1 1223345556677777653 4556655
No 172
>3o8m_A Hexokinase; rnaseh-like fold, glycolysis, glucose repression binding, MIG1 binding, transferase; HET: GLC BGC; 1.42A {Kluyveromyces lactis} PDB: 3o1b_A 3o08_A* 3o1w_A* 3o5b_A* 3o4w_A 3o80_A* 3o6w_A* 1ig8_A 3b8a_X*
Probab=26.50 E-value=46 Score=29.75 Aligned_cols=25 Identities=24% Similarity=0.486 Sum_probs=20.7
Q ss_pred CCCeEEEEecCCCeEEEEEecCCCc
Q 030251 24 KRGRFLGLDVGDKYVGLSISDPKNK 48 (180)
Q Consensus 24 ~~~~iLalD~G~kriGvAvsd~~~~ 48 (180)
..|.+||||+|...+=|++.+..+.
T Consensus 78 E~G~~LalDlGGTn~Rv~~V~l~g~ 102 (485)
T 3o8m_A 78 ETGDFLALDLGGTNLRVVLVKLGGN 102 (485)
T ss_dssp CEEEEEEEEESSSEEEEEEEEEESS
T ss_pred cceEEEEEEecCCeEEEEEEEECCC
Confidence 3479999999999999999876554
No 173
>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*
Probab=26.40 E-value=1.3e+02 Score=24.74 Aligned_cols=55 Identities=13% Similarity=0.197 Sum_probs=37.2
Q ss_pred HHHHHHHHHhh-----CCCEEEEecccC-CCCCchHHHHHHHHHHHHHhccCCCCCcEEEecccccH
Q 030251 67 AEDFRSLISEF-----NLEGFIVGYPFN-RQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTS 127 (180)
Q Consensus 67 ~~~L~~li~e~-----~i~~iVVGlP~~-dG~~s~~~~~v~~F~~~L~~~~~~~~lpV~~~DEr~TT 127 (180)
++.|.+.+.++ ++..|++--|-| .|..-+.. ..++.++..++. ++ .+++||-++.
T Consensus 175 ~~~l~~~l~~~~~~~~~~~~v~i~~p~nptG~~~~~~-~l~~l~~~~~~~----~~-~li~Dea~~~ 235 (435)
T 3piu_A 175 ETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRN-ELYLLLSFVEDK----GI-HLISDEIYSG 235 (435)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHH-HHHHHHHHHHHH----TC-EEEEECTTGG
T ss_pred HHHHHHHHHHHHhcCCCeEEEEEcCCCCCCCCCCCHH-HHHHHHHHHHHc----CC-EEEEeccccc
Confidence 57788888764 778899999988 88765433 355666656552 43 5567887653
No 174
>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*
Probab=26.11 E-value=1.2e+02 Score=24.69 Aligned_cols=55 Identities=4% Similarity=-0.010 Sum_probs=36.0
Q ss_pred HHHHHHHHHhhCCCEE-EEecccC-CCCCchHHHHHHHHHHHHHhccCCCCCcEEEecccccH
Q 030251 67 AEDFRSLISEFNLEGF-IVGYPFN-RQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTS 127 (180)
Q Consensus 67 ~~~L~~li~e~~i~~i-VVGlP~~-dG~~s~~~~~v~~F~~~L~~~~~~~~lpV~~~DEr~TT 127 (180)
++.|.+.+.+.++..| |+-.|-| .|..-+. ...+++++..++. ++. +.+||-++.
T Consensus 151 ~~~l~~~l~~~~~~~v~~~~~~~nptG~~~~~-~~l~~l~~~~~~~----~~~-li~De~~~~ 207 (397)
T 2zyj_A 151 LDALEEVLKRERPRFLYLIPSFQNPTGGLTPL-PARKRLLQMVMER----GLV-VVEDDAYRE 207 (397)
T ss_dssp HHHHHHHHHHCCCSCEEECCBSCTTTCCBCCH-HHHHHHHHHHHHH----TCC-EEEECTTTT
T ss_pred HHHHHHHHhhcCCeEEEECCCCcCCCCCcCCH-HHHHHHHHHHHHc----CCE-EEEeCCccc
Confidence 5788888887678876 5688878 7876543 3455666666552 443 456777653
No 175
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=26.11 E-value=53 Score=23.39 Aligned_cols=54 Identities=7% Similarity=-0.136 Sum_probs=32.6
Q ss_pred HHHHHHHHHhhCCCEEEEecccCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEeccccc
Q 030251 67 AEDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFT 126 (180)
Q Consensus 67 ~~~L~~li~e~~i~~iVVGlP~~dG~~s~~~~~v~~F~~~L~~~~~~~~lpV~~~DEr~T 126 (180)
.+.|.+.+++++++.||+|-.-.++-.. ...-..++++-.. . ++||..+-..-+
T Consensus 106 ~~~I~~~a~~~~~DlIV~G~~g~~~~~~---~~~Gsv~~~vl~~--~-~~PVlvv~~~~~ 159 (170)
T 2dum_A 106 WDEIVKVAEEENVSLIILPSRGKLSLSH---EFLGSTVMRVLRK--T-KKPVLIIKEVDE 159 (170)
T ss_dssp HHHHHHHHHHTTCSEEEEESCCCCC--T---TCCCHHHHHHHHH--C-SSCEEEECCCCC
T ss_pred HHHHHHHHHHcCCCEEEECCCCCCcccc---ceechHHHHHHHh--C-CCCEEEEccCCc
Confidence 6889999999999999999543211100 0011234444442 2 689998865443
No 176
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=26.08 E-value=2.2e+02 Score=21.63 Aligned_cols=45 Identities=16% Similarity=0.224 Sum_probs=24.1
Q ss_pred HHHHHHhhCCCEEEEecccC-CC-CCchHHHHHHHHHHHHHhccCCCCCcEEEecccc
Q 030251 70 FRSLISEFNLEGFIVGYPFN-RQ-QNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGF 125 (180)
Q Consensus 70 L~~li~e~~i~~iVVGlP~~-dG-~~s~~~~~v~~F~~~L~~~~~~~~lpV~~~DEr~ 125 (180)
+.+.+.+.++++||+- |.+ .. ... ..+.+.+.+. ++||+++|...
T Consensus 63 ~~~~l~~~~vdgiIi~-~~~~~~~~~~------~~~~~~~~~~----~iPvV~~~~~~ 109 (298)
T 3tb6_A 63 GLENLLSQHIDGLIVE-PTKSALQTPN------IGYYLNLEKN----GIPFAMINASY 109 (298)
T ss_dssp HHHHHHHTCCSEEEEC-CSSTTSCCTT------HHHHHHHHHT----TCCEEEESSCC
T ss_pred HHHHHHHCCCCEEEEe-cccccccCCc------HHHHHHHHhc----CCCEEEEecCc
Confidence 3333446899999985 333 11 112 1344456552 67777776443
No 177
>3r6w_A FMN-dependent NADH-azoreductase 1; nitrofurazone, P. aeruginosa, nitroreductase, flavodoxin, oxidoreductase; HET: FMN NFZ; 2.08A {Pseudomonas aeruginosa} PDB: 3lt5_A* 2v9c_A* 3keg_A*
Probab=26.04 E-value=81 Score=23.85 Aligned_cols=36 Identities=19% Similarity=0.409 Sum_probs=25.2
Q ss_pred HHHHHHh-hCCCEEEEecccCCCCCchHHHHHHHHHHHHH
Q 030251 70 FRSLISE-FNLEGFIVGYPFNRQQNAADAVQVKLFIDDLS 108 (180)
Q Consensus 70 L~~li~e-~~i~~iVVGlP~~dG~~s~~~~~v~~F~~~L~ 108 (180)
+.+++++ ...|.||+|-|..+++...+ .+.|.+++-
T Consensus 78 ~~~~~~~l~~AD~iV~~~P~y~~~~pa~---lK~~iD~~~ 114 (212)
T 3r6w_A 78 SDQLVGELFDSDLLVISTPMYNFSVPSG---LKAWIDQIV 114 (212)
T ss_dssp HHHHHHHHHHCSEEEEEEECBTTBCCHH---HHHHHHHHC
T ss_pred HHHHHHHHHhCCEEEEEcCcccccCCHH---HHHHHHHHh
Confidence 4444444 26899999999996666653 457888884
No 178
>2yvt_A Hypothetical protein AQ_1956; structural genomics, unknown function, NPPSFA, national PROJ protein structural and functional analyses; 1.60A {Aquifex aeolicus} SCOP: d.159.1.6
Probab=25.99 E-value=1.8e+02 Score=22.02 Aligned_cols=19 Identities=16% Similarity=0.228 Sum_probs=14.4
Q ss_pred HHHHHHHHHhhCCCEEEEe
Q 030251 67 AEDFRSLISEFNLEGFIVG 85 (180)
Q Consensus 67 ~~~L~~li~e~~i~~iVVG 85 (180)
++++.+.+.+.++|.||+.
T Consensus 21 ~~~~l~~~~~~~~D~vi~~ 39 (260)
T 2yvt_A 21 LPKLKGVIAEKQPDILVVV 39 (260)
T ss_dssp HHHHHHHHHHHCCSEEEEE
T ss_pred HHHHHHHHHhcCCCEEEEC
Confidence 4666666777899998887
No 179
>3oby_A Protein pelota homolog; SM fold, hydrolase; 2.90A {Archaeoglobus fulgidus}
Probab=25.95 E-value=1.3e+02 Score=25.52 Aligned_cols=141 Identities=8% Similarity=0.007 Sum_probs=71.5
Q ss_pred HHHHhhhccCCCCeEEEEecCCCeEEEEEecCCCceeccceeeeCCC-CChhhHHHHHHHHHHhhCCCEEEEecccCCCC
Q 030251 14 FEQMLKRKVSKRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLLRKK-NTIDLMAEDFRSLISEFNLEGFIVGYPFNRQQ 92 (180)
Q Consensus 14 ~~~~~~~~~~~~~~iLalD~G~kriGvAvsd~~~~~a~Pl~~i~~~~-~~~~~~~~~L~~li~e~~i~~iVVGlP~~dG~ 92 (180)
...|+.+.....--++.+|-|...||+--+......+.=-..++.+. .....++.++.+.+.++++++||||-
T Consensus 119 L~ea~~~~~~~~~~~vv~d~g~A~i~~l~~~~~~~~~~i~~~ipkK~g~~r~~F~~~V~e~~~~~~v~~iIlaG------ 192 (352)
T 3oby_A 119 LRRAVEDSNRPEIVMLTIEEGYAVAGVLRQWGVEEIFEERMGYGKGMGDSRKEFFGEVAAKLESFDFKYLIVAG------ 192 (352)
T ss_dssp HHHHHTTSCCCCEEEEEEETTEEEEEEEETTEEEEEEEEEC--------CCCCHHHHHHHHHHHHCCSEEEEEC------
T ss_pred HHHHhhccccCcEEEEEEECCcEEEEEEeCCEEEEEEEEeccCCCccchhHHHHHHHHHHHHHhcCCCEEEEEC------
Confidence 34455432233445788999999999877654332222111222110 01124678888888888999999993
Q ss_pred CchHHHHHHHHHHHHHhcc-CCCCCcEEEecccccHHHHHHHhccCC-CCCCCCCCCCcHHHHHHHHHHHHhhhhh
Q 030251 93 NAADAVQVKLFIDDLSATK-KLEDMKYAYWNEGFTSKGVELLLNPLD-LHPVEYKTILDKFAAVGILQEYLDNANR 166 (180)
Q Consensus 93 ~s~~~~~v~~F~~~L~~~~-~~~~lpV~~~DEr~TT~~A~~~l~~~g-~~~~~~k~~iD~~AA~iILq~yL~~~~~ 166 (180)
++.... .|.+.|.... +. .-.|+.+|=+++...+-.-+...+ +.. .=......-..-+++.|++....
T Consensus 193 Pg~~K~---~f~~~l~~~~~~l-~~kvv~v~~s~gg~~gl~Evl~~~~v~~--~L~~~k~~~E~~~le~f~~~l~~ 262 (352)
T 3oby_A 193 PGFAKN---DFLDFLKERYPEM-AKNAVVVDVSSVGSRGFIEILKRRVVDK--IVGEVRLAEEAEYIDRLLEGIAK 262 (352)
T ss_dssp STTHHH---HHHHHHHHHCHHH-HTTEEECCCCCCHHHHHHHHHHTTHHHH--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHH---HHHHHHHHHHHHh-hCcEEEEECCCCchhhHHHHHhChhHHH--HHHHHHHHHHHHHHHHHHHHHhc
Confidence 333333 3444444310 00 123667786666665533322111 000 00112334455678888876653
No 180
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=25.95 E-value=2e+02 Score=21.29 Aligned_cols=59 Identities=12% Similarity=0.054 Sum_probs=39.9
Q ss_pred hhHHHHHHHHHHhhCCCEEEEecccC-C-CCCchHHHHHHHHHHHHHhccCCCCCcEEEeccccc
Q 030251 64 DLMAEDFRSLISEFNLEGFIVGYPFN-R-QQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFT 126 (180)
Q Consensus 64 ~~~~~~L~~li~e~~i~~iVVGlP~~-d-G~~s~~~~~v~~F~~~L~~~~~~~~lpV~~~DEr~T 126 (180)
+.+.+.+.+++.+.+++.+|+=-|-. . +........+..+.+.+++ . +++|+++.+...
T Consensus 114 ~~~~~~i~~~~~~~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~---~-~~~vi~~~h~~~ 174 (247)
T 2dr3_A 114 REFIEVLRQAIRDINAKRVVVDSVTTLYINKPAMARSIILQLKRVLAG---T-GCTSIFVSQVSV 174 (247)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHH---T-TCEEEEEEECC-
T ss_pred HHHHHHHHHHHHHhCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHH---C-CCeEEEEecCCC
Confidence 34568888888889999999987766 4 3333344555566665554 2 789998876554
No 181
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=25.83 E-value=50 Score=22.66 Aligned_cols=22 Identities=5% Similarity=0.037 Sum_probs=19.4
Q ss_pred HHHHHHHHHhhCCCEEEEeccc
Q 030251 67 AEDFRSLISEFNLEGFIVGYPF 88 (180)
Q Consensus 67 ~~~L~~li~e~~i~~iVVGlP~ 88 (180)
.+.|.+..++++++.||+|-.-
T Consensus 99 ~~~I~~~a~~~~~dliV~G~~~ 120 (147)
T 3hgm_A 99 SRTIVRFARKRECDLVVIGAQG 120 (147)
T ss_dssp HHHHHHHHHHTTCSEEEECSSC
T ss_pred HHHHHHHHHHhCCCEEEEeCCC
Confidence 5889999999999999999653
No 182
>1pq4_A Periplasmic binding protein component of AN ABC T uptake transporter; ZNUA, loop, metal-binding, metal binding protein; 1.90A {Synechocystis SP} SCOP: c.92.2.2 PDB: 2ov3_A 2ov1_A
Probab=25.30 E-value=85 Score=25.56 Aligned_cols=43 Identities=16% Similarity=0.319 Sum_probs=33.9
Q ss_pred CchHHHHHHHHHHHHHhccCCCCCcEEEecccccHHHHHHHhccCCC
Q 030251 93 NAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDL 139 (180)
Q Consensus 93 ~s~~~~~v~~F~~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l~~~g~ 139 (180)
..+..+.+.++.+.+++. +++++|++..+++..|+.+-++.|.
T Consensus 219 ~eps~~~l~~l~~~ik~~----~v~~If~e~~~~~~~~~~ia~~~g~ 261 (291)
T 1pq4_A 219 QEPSAQELKQLIDTAKEN----NLTMVFGETQFSTKSSEAIAAEIGA 261 (291)
T ss_dssp BCCCHHHHHHHHHHHHTT----TCCEEEEETTSCCHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHHHc----CCCEEEEeCCCChHHHHHHHHHcCC
Confidence 445677888888888873 7899999999999988877566554
No 183
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}
Probab=25.20 E-value=2e+02 Score=22.71 Aligned_cols=51 Identities=8% Similarity=0.098 Sum_probs=36.4
Q ss_pred HHHHHHHHHhhCCCEEEEecccC-CCCCchHHHHHHHHHHHHHhccCCCCCcEEEeccccc
Q 030251 67 AEDFRSLISEFNLEGFIVGYPFN-RQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFT 126 (180)
Q Consensus 67 ~~~L~~li~e~~i~~iVVGlP~~-dG~~s~~~~~v~~F~~~L~~~~~~~~lpV~~~DEr~T 126 (180)
.+.|.+.+.++++..|++=.|-+ .|...+. ++.++..++. ++ .+.+||-++
T Consensus 160 ~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l----~~i~~l~~~~----~~-~li~Dea~~ 211 (397)
T 3f9t_A 160 EKFVKDAVEDYDVDGIIGIAGTTELGTIDNI----EELSKIAKEN----NI-YIHVDAAFG 211 (397)
T ss_dssp HHHHHHHHHHSCCCEEEEEBSCTTTCCBCCH----HHHHHHHHHH----TC-EEEEECTTG
T ss_pred HHHHHHHHhhcCCeEEEEECCCCCCCCCCCH----HHHHHHHHHh----CC-eEEEEcccc
Confidence 58888888877888999999989 8987652 3344444442 43 567799876
No 184
>1eo1_A Hypothetical protein MTH1175; mixed A/B protein, mixed beta sheet, strand order 321456; NMR {Methanothermobacterthermautotrophicus} SCOP: c.55.5.1
Probab=25.14 E-value=1.7e+02 Score=20.19 Aligned_cols=52 Identities=12% Similarity=0.056 Sum_probs=36.6
Q ss_pred HHHHHHHhhCCCEEEEecccCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEecccccHHHHHHHhccC
Q 030251 69 DFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPL 137 (180)
Q Consensus 69 ~L~~li~e~~i~~iVVGlP~~dG~~s~~~~~v~~F~~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l~~~ 137 (180)
.+.+++.+.+++.||+| ..++ .....|.+. ++.|+... ..|-.+|-+.|.+.
T Consensus 56 ~~~~~l~~~gv~~vi~~------~iG~------~a~~~L~~~----GI~v~~~~-~~~i~eal~~~~~g 107 (124)
T 1eo1_A 56 RTAQIIANNGVKAVIAS------SPGP------NAFEVLNEL----GIKIYRAT-GTSVEENLKLFTEG 107 (124)
T ss_dssp THHHHHHHTTCCEEEEC------CSSH------HHHHHHHHH----TCEEEECC-SCCHHHHHHHHHTT
T ss_pred HHHHHHHHCCCCEEEEC------CcCH------HHHHHHHHC----CCEEEEcC-CCCHHHHHHHHHhC
Confidence 45677778999999999 4554 344567763 78888864 46777877766543
No 185
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=25.10 E-value=57 Score=23.27 Aligned_cols=21 Identities=14% Similarity=0.376 Sum_probs=19.1
Q ss_pred HHHHHHHHHhhCCCEEEEecc
Q 030251 67 AEDFRSLISEFNLEGFIVGYP 87 (180)
Q Consensus 67 ~~~L~~li~e~~i~~iVVGlP 87 (180)
.+.|.+.+++++++.||+|-.
T Consensus 106 ~~~I~~~a~~~~~DLIV~G~~ 126 (155)
T 3dlo_A 106 PDDIVDFADEVDAIAIVIGIR 126 (155)
T ss_dssp HHHHHHHHHHTTCSEEEEECC
T ss_pred HHHHHHHHHHcCCCEEEECCC
Confidence 689999999999999999954
No 186
>3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens}
Probab=25.03 E-value=2.3e+02 Score=23.60 Aligned_cols=60 Identities=8% Similarity=0.078 Sum_probs=40.1
Q ss_pred HHHHHhhCCCEEEEecccC-CCCCchHHHHHHHHHHHHHhccCCCCCcEEEe---cccccHHHHHHHhccCCC
Q 030251 71 RSLISEFNLEGFIVGYPFN-RQQNAADAVQVKLFIDDLSATKKLEDMKYAYW---NEGFTSKGVELLLNPLDL 139 (180)
Q Consensus 71 ~~li~e~~i~~iVVGlP~~-dG~~s~~~~~v~~F~~~L~~~~~~~~lpV~~~---DEr~TT~~A~~~l~~~g~ 139 (180)
.+.+.+..+++||+|. |+ ||+... ..++++.+... +++++|. |+-.+..+|.+.+.+.|+
T Consensus 117 I~~~~~~GAdGvVfG~-L~~dg~iD~--~~~~~Li~~a~------~l~vTFHRAFD~~~d~~~Ale~Li~lGv 180 (287)
T 3iwp_A 117 IRLAKLYGADGLVFGA-LTEDGHIDK--ELCMSLMAICR------PLPVTFHRAFDMVHDPMAALETLLTLGF 180 (287)
T ss_dssp HHHHHHTTCSEEEECC-BCTTSCBCH--HHHHHHHHHHT------TSCEEECGGGGGCSCHHHHHHHHHHHTC
T ss_pred HHHHHHcCCCEEEEee-eCCCCCcCH--HHHHHHHHHcC------CCcEEEECchhccCCHHHHHHHHHHcCC
Confidence 3445667999999994 56 787664 22333333221 5778764 787788899888887565
No 187
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=24.92 E-value=2.2e+02 Score=21.42 Aligned_cols=59 Identities=10% Similarity=-0.041 Sum_probs=39.5
Q ss_pred HHHHHHHHhhCCCEEEEecccCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEecccccHHHHHHHhc
Q 030251 68 EDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLN 135 (180)
Q Consensus 68 ~~L~~li~e~~i~~iVVGlP~~dG~~s~~~~~v~~F~~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l~ 135 (180)
++..+.+.+..++.|++.+-+. +..+ ..+++.|++. .+.+||+++-..-+...+.+.+.
T Consensus 57 ~~al~~~~~~~~dlvllD~~lp-~~~g------~~~~~~lr~~--~~~~~ii~lt~~~~~~~~~~~~~ 115 (250)
T 3r0j_A 57 AQALDRARETRPDAVILDVXMP-GMDG------FGVLRRLRAD--GIDAPALFLTARDSLQDKIAGLT 115 (250)
T ss_dssp HHHHHHHHHHCCSEEEEESCCS-SSCH------HHHHHHHHHT--TCCCCEEEEECSTTHHHHHHHHT
T ss_pred HHHHHHHHhCCCCEEEEeCCCC-CCCH------HHHHHHHHhc--CCCCCEEEEECCCCHHHHHHHHH
Confidence 4455666778999999996554 2222 2566777763 45789998877766666655554
No 188
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=24.90 E-value=1.3e+02 Score=20.33 Aligned_cols=40 Identities=23% Similarity=0.358 Sum_probs=25.1
Q ss_pred CCCEEEEecccCCCCCchHHHHHHHHHHHHHhccCCCCCcEEE
Q 030251 78 NLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAY 120 (180)
Q Consensus 78 ~i~~iVVGlP~~dG~~s~~~~~v~~F~~~L~~~~~~~~lpV~~ 120 (180)
+.+.||+|-|-..|...+. ..++.|.+++... +.+.++..
T Consensus 46 ~~d~vi~g~p~y~~~~~~~-~~~~~fl~~l~~~--l~~k~~~~ 85 (137)
T 2fz5_A 46 SKDVILLGCPAMGSEELED-SVVEPFFTDLAPK--LKGKKVGL 85 (137)
T ss_dssp TCSEEEEECCCBTTTBCCH-HHHHHHHHHHGGG--CSSCEEEE
T ss_pred cCCEEEEEccccCCCCCCH-HHHHHHHHHhhhh--cCCCEEEE
Confidence 5789999999884444332 1256788887642 44566553
No 189
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=24.87 E-value=45 Score=22.83 Aligned_cols=19 Identities=11% Similarity=0.216 Sum_probs=17.8
Q ss_pred HHHHHHHHHhhCCCEEEEe
Q 030251 67 AEDFRSLISEFNLEGFIVG 85 (180)
Q Consensus 67 ~~~L~~li~e~~i~~iVVG 85 (180)
.+.|.+..++++++.||+|
T Consensus 98 ~~~I~~~a~~~~~dliV~G 116 (138)
T 1q77_A 98 SEEVKKFVEGKGYELVVWA 116 (138)
T ss_dssp HHHHHHHHTTSCCSEEEEC
T ss_pred HHHHHHHHHhcCCCEEEEe
Confidence 5889999999999999999
No 190
>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}
Probab=24.85 E-value=1.9e+02 Score=22.94 Aligned_cols=54 Identities=13% Similarity=0.028 Sum_probs=36.7
Q ss_pred HHHHHHHHHhhCCCEEEEecccC-CCCCchHHHHHHHHHHHHHhccCCCCCcEEEecccccH
Q 030251 67 AEDFRSLISEFNLEGFIVGYPFN-RQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTS 127 (180)
Q Consensus 67 ~~~L~~li~e~~i~~iVVGlP~~-dG~~s~~~~~v~~F~~~L~~~~~~~~lpV~~~DEr~TT 127 (180)
++.|.+.+.+. ...+++-.|-| .|..-+.. .+++.++..++. ++ ++.+||-++.
T Consensus 140 ~~~l~~~l~~~-~~~v~i~~p~nptG~~~~~~-~l~~l~~~~~~~----~~-~li~De~~~~ 194 (377)
T 3fdb_A 140 LHDVEKGFQAG-ARSILLCNPYNPLGMVFAPE-WLNELCDLAHRY----DA-RVLVDEIHAP 194 (377)
T ss_dssp HHHHHHHHHTT-CCEEEEESSBTTTTBCCCHH-HHHHHHHHHHHT----TC-EEEEECTTGG
T ss_pred HHHHHHHhccC-CCEEEEeCCCCCCCCCCCHH-HHHHHHHHHHHc----CC-EEEEEcccch
Confidence 57888888764 78999999988 78765433 356666666652 54 4557887653
No 191
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=24.83 E-value=1.9e+02 Score=22.60 Aligned_cols=50 Identities=10% Similarity=0.036 Sum_probs=33.3
Q ss_pred HHHHHHHHHhhCCCEEEEecccCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEec
Q 030251 67 AEDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWN 122 (180)
Q Consensus 67 ~~~L~~li~e~~i~~iVVGlP~~dG~~s~~~~~v~~F~~~L~~~~~~~~lpV~~~D 122 (180)
.+.|.+..++++++.||+|-- |..+-.....-..++++-.. ..+||..+-
T Consensus 255 ~~~I~~~a~~~~~dLiV~G~~---g~~~~~~~~~Gsv~~~vl~~---~~~pVLvv~ 304 (319)
T 3olq_A 255 EQVIPQVCEELNAGIVVLGIL---GRTGLSAAFLGNTAEQLIDH---IKCDLLAIK 304 (319)
T ss_dssp HHHHHHHHHHTTEEEEEEECC---SCCSTHHHHHHHHHHHHHTT---CCSEEEEEC
T ss_pred HHHHHHHHHHhCCCEEEEecc---CccCCccccccHHHHHHHhh---CCCCEEEEC
Confidence 588999999999999999931 22222222334566666653 378988874
No 192
>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}
Probab=24.81 E-value=1.5e+02 Score=23.85 Aligned_cols=51 Identities=12% Similarity=0.085 Sum_probs=34.6
Q ss_pred HHHHHHHHHhh---CCCEEEEecccC-CCCCchHHHHHHHHHHHHHhccCCCCCcEEEeccccc
Q 030251 67 AEDFRSLISEF---NLEGFIVGYPFN-RQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFT 126 (180)
Q Consensus 67 ~~~L~~li~e~---~i~~iVVGlP~~-dG~~s~~~~~v~~F~~~L~~~~~~~~lpV~~~DEr~T 126 (180)
.+.|.+.+.+. ++..|++.-|.+ .|..-+ . ++.++..++. ++ .+.+||-++
T Consensus 159 ~~~l~~~l~~~~~~~~~~v~~~~~~nptG~~~~-~---~~l~~~~~~~----~~-~li~De~~~ 213 (398)
T 3a2b_A 159 MEDLRAKLSRLPEDSAKLICTDGIFSMEGDIVN-L---PELTSIANEF----DA-AVMVDDAHS 213 (398)
T ss_dssp HHHHHHHHHTSCSSSCEEEEEESBCTTTCCBCC-H---HHHHHHHHHH----TC-EEEEECTTT
T ss_pred HHHHHHHHHhhccCCceEEEEeCCCCCCCCccC-H---HHHHHHHHHc----Cc-EEEEECCCc
Confidence 47788888875 688999999988 887765 2 3344444442 43 566788775
No 193
>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*
Probab=24.63 E-value=1.4e+02 Score=24.17 Aligned_cols=54 Identities=13% Similarity=0.109 Sum_probs=37.0
Q ss_pred HHHHHHHHHhhCCCEEEEecccC-CCCCchHHHHHHHHHHHHHhccCCCCCcEEEeccccc
Q 030251 67 AEDFRSLISEFNLEGFIVGYPFN-RQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFT 126 (180)
Q Consensus 67 ~~~L~~li~e~~i~~iVVGlP~~-dG~~s~~~~~v~~F~~~L~~~~~~~~lpV~~~DEr~T 126 (180)
++.|.+.+.+.++..|++--|-| .|..-+ ....+++++..++. ++ .+.+||-++
T Consensus 153 ~~~l~~~l~~~~~~~v~~~~~~nptG~~~~-~~~l~~i~~~~~~~----~~-~li~De~~~ 207 (399)
T 1c7n_A 153 FQKLEKLSKDKNNKALLFCSPHNPVGRVWK-KDELQKIKDIVLKS----DL-MLWSDEIHF 207 (399)
T ss_dssp HHHHHHHHTCTTEEEEEEESSBTTTTBCCC-HHHHHHHHHHHHHS----SC-EEEEECTTT
T ss_pred HHHHHHHhccCCCcEEEEcCCCCCCCcCcC-HHHHHHHHHHHHHc----CC-EEEEEcccc
Confidence 58888888766788888888877 777544 23556677666652 44 455677665
No 194
>2xvy_A Chelatase, putative; metal binding protein; HET: HEM; 1.70A {Desulfovibrio vulgaris} PDB: 2xvx_A* 2xvz_A*
Probab=24.48 E-value=1.1e+02 Score=24.28 Aligned_cols=35 Identities=14% Similarity=0.156 Sum_probs=20.7
Q ss_pred CEEEEecccCCCCCchHH-HHHHHHHHHHHhccCCCCCcEEE
Q 030251 80 EGFIVGYPFNRQQNAADA-VQVKLFIDDLSATKKLEDMKYAY 120 (180)
Q Consensus 80 ~~iVVGlP~~dG~~s~~~-~~v~~F~~~L~~~~~~~~lpV~~ 120 (180)
..++|+ .||..+.+ ..+.++++.+++. +++.||.+
T Consensus 11 aillv~----hGS~~~~~~~~~~~~~~~l~~~--~~~~~V~~ 46 (269)
T 2xvy_A 11 GILLVA----FGTSVEEARPALDKMGDRVRAA--HPDIPVRW 46 (269)
T ss_dssp EEEEEE----CCCCCTTTTHHHHHHHHHHHHH--CTTSCEEE
T ss_pred eEEEEe----CCCCcHHHHHHHHHHHHHHHHH--CCCCeEEe
Confidence 346666 67665543 3456677777763 55666653
No 195
>1t0i_A YLR011WP; FMN binding protein, flavodoxin, azoreductase, oxidoreductase; HET: FMN; 2.00A {Saccharomyces cerevisiae} SCOP: c.23.5.4
Probab=23.90 E-value=1.2e+02 Score=22.21 Aligned_cols=47 Identities=15% Similarity=0.104 Sum_probs=29.7
Q ss_pred HHHHHHHHhhCCCEEEEecccCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEe
Q 030251 68 EDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYW 121 (180)
Q Consensus 68 ~~L~~li~e~~i~~iVVGlP~~dG~~s~~~~~v~~F~~~L~~~~~~~~lpV~~~ 121 (180)
.++.+-+. +.|.||+|-|..+++.+.. .+.|.+++.. .+.+-|+.++
T Consensus 76 ~~~~~~l~--~aD~iI~~sP~y~~~~p~~---lK~~iD~~~~--~l~gK~~~~~ 122 (191)
T 1t0i_A 76 RSWSRIVN--ALDIIVFVTPQYNWGYPAA---LKNAIDRLYH--EWHGKPALVV 122 (191)
T ss_dssp HHHHHHHH--TCSEEEEEEECBTTBCCHH---HHHHHHTCST--TTTTCEEEEE
T ss_pred HHHHHHHH--hCCEEEEEeceECCCCCHH---HHHHHHHHHh--hcCCCEEEEE
Confidence 44444444 6899999999996666553 4567777653 1335565554
No 196
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6
Probab=23.87 E-value=1.6e+02 Score=21.57 Aligned_cols=48 Identities=17% Similarity=0.170 Sum_probs=30.4
Q ss_pred HHHHHHHHHhhCCCEEEEecccC-CCCCchHHHHHHHHHHHHHhccCCCCCcEEEe
Q 030251 67 AEDFRSLISEFNLEGFIVGYPFN-RQQNAADAVQVKLFIDDLSATKKLEDMKYAYW 121 (180)
Q Consensus 67 ~~~L~~li~e~~i~~iVVGlP~~-dG~~s~~~~~v~~F~~~L~~~~~~~~lpV~~~ 121 (180)
++++.+.+.+.++|.||+.-=+. .|. ....+..|.+.|++ . +.|++++
T Consensus 21 ~~~~~~~~~~~~~D~vi~~GDl~~~~~---~~~~~~~~~~~l~~---~-~~pv~~v 69 (228)
T 1uf3_A 21 LEKFVKLAPDTGADAIALIGNLMPKAA---KSRDYAAFFRILSE---A-HLPTAYV 69 (228)
T ss_dssp HHHHHTHHHHHTCSEEEEESCSSCTTC---CHHHHHHHHHHHGG---G-CSCEEEE
T ss_pred HHHHHHHHhhcCCCEEEECCCCCCCCC---CHHHHHHHHHHHHh---c-CCcEEEE
Confidence 45666667777899888763332 221 23445677788876 2 5788877
No 197
>1z69_A COG2141, coenzyme F420-dependent N(5),N(10)- methylenetetrahydromethanopterin reductase; (alpha, beta)8 barrel, oxidoreductase; HET: F42 1PG; 2.61A {Methanosarcina barkeri}
Probab=23.65 E-value=1.1e+02 Score=24.74 Aligned_cols=40 Identities=20% Similarity=0.307 Sum_probs=23.9
Q ss_pred ChhhHHHHHHHHHHhhCCCEEEEecccCCCCCchHHHHHHHHHHH
Q 030251 62 TIDLMAEDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDD 106 (180)
Q Consensus 62 ~~~~~~~~L~~li~e~~i~~iVVGlP~~dG~~s~~~~~v~~F~~~ 106 (180)
+++.+.++|.++.+ ..++.++++.|... ...+.++.|++.
T Consensus 284 tp~~v~~~l~~~~~-~G~d~~~l~~~~~~----~~~~~l~~~a~~ 323 (327)
T 1z69_A 284 TPDDCMKRIKDLEA-IGVTQIVAGSPIGP----AKEKAIKLIGKE 323 (327)
T ss_dssp SHHHHHHHHHHHHH-TTCCEEEEEEEESS----SHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH-cCCCEEEEcCCCCc----cHHHHHHHHHHH
Confidence 34556677777765 77888888766541 133444555553
No 198
>3svl_A Protein YIEF; E. coli CHRR enzyme, chromate bioremediation, tetramer role, mutant enzymes, oxidoreductase; HET: FMN; 2.20A {Escherichia coli}
Probab=23.45 E-value=1.3e+02 Score=22.66 Aligned_cols=51 Identities=18% Similarity=0.096 Sum_probs=33.3
Q ss_pred HHHHHHHHHhhCCCEEEEecccCCCCCchHHHHHHHHHHHHHhc--cCCCCCcEEEec
Q 030251 67 AEDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSAT--KKLEDMKYAYWN 122 (180)
Q Consensus 67 ~~~L~~li~e~~i~~iVVGlP~~dG~~s~~~~~v~~F~~~L~~~--~~~~~lpV~~~D 122 (180)
+.++.+.+. +.|+||+|-|..+++.+...+ .|.+++... ..+.+-|+.++-
T Consensus 63 ~~~l~~~i~--~AD~iv~~sP~y~~~~~~~lK---~~iD~~~~~~~~~~~gK~~~~~~ 115 (193)
T 3svl_A 63 VEALAEQIR--QADGVVIVTPEYNYSVPGGLK---NAIDWLSRLPDQPLAGKPVLIQT 115 (193)
T ss_dssp HHHHHHHHH--HSSEEEEEECCBTTBCCHHHH---HHHHHHHTSTTCTTTTCEEEEEE
T ss_pred HHHHHHHHH--HCCEEEEEecccCCCCCHHHH---HHHHHHhhcCccccCCCeEEEEE
Confidence 455555555 689999999999777776544 566666531 124466766653
No 199
>1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN, alpha/beta/alpha sandwich, PSI, protein structure initiative; HET: FMN; 1.40A {Salmonella typhimurium} SCOP: c.23.5.3 PDB: 1tik_A 2z98_A* 2d5i_A* 1v4b_A* 2z9b_A* 2z9c_A* 2z9d_A*
Probab=23.35 E-value=1.1e+02 Score=22.44 Aligned_cols=28 Identities=11% Similarity=0.247 Sum_probs=21.7
Q ss_pred CCCEEEEecccCCCCCchHHHHHHHHHHHHH
Q 030251 78 NLEGFIVGYPFNRQQNAADAVQVKLFIDDLS 108 (180)
Q Consensus 78 ~i~~iVVGlP~~dG~~s~~~~~v~~F~~~L~ 108 (180)
+.|.||+|-|..+++.+.+ .+.|.+++.
T Consensus 86 ~aD~iv~~~P~y~~~~p~~---lK~~iD~~~ 113 (201)
T 1t5b_A 86 AHDVIVIAAPMYNFNIPTQ---LKNYFDLIA 113 (201)
T ss_dssp HCSEEEEECCCBTTBCCHH---HHHHHHHHC
T ss_pred hCCEEEEEeCcccCcCCHH---HHHHHHHhe
Confidence 5899999999995555543 567888886
No 200
>3n2q_A Sex pheromone staph-CAM373; structural genomics, MCSG, PSI-2, protein structure initiati midwest center for structural genomics; 2.55A {Bacillus cereus}
Probab=23.30 E-value=48 Score=27.74 Aligned_cols=44 Identities=11% Similarity=0.291 Sum_probs=27.1
Q ss_pred hCCCEEEEecccC-CCCCchHHHHHHHHH----HHHHhccCCCCCcEEE
Q 030251 77 FNLEGFIVGYPFN-RQQNAADAVQVKLFI----DDLSATKKLEDMKYAY 120 (180)
Q Consensus 77 ~~i~~iVVGlP~~-dG~~s~~~~~v~~F~----~~L~~~~~~~~lpV~~ 120 (180)
.+..+|+|||-+| .-+..++-...++.| .+|++...+.++||++
T Consensus 86 ~~L~GisIGLamNsv~s~~~~~~~Gk~~A~~iv~rlR~~~~l~~vPI~i 134 (287)
T 3n2q_A 86 LSLSGVMIGLAMSSSVSNEEAMSKGTEVAKQLIEAINKNDKYNKSPITF 134 (287)
T ss_dssp SEEEEEEEEEEECTTSCHHHHHHHHHHHHHHHHHHHHHCTTCCCCCEEE
T ss_pred EEEccEEEEEEecCcCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCCEEE
Confidence 3467999999999 445555544444444 4444432356889763
No 201
>3mdq_A Exopolyphosphatase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE; 1.50A {Cytophaga hutchinsonii}
Probab=23.28 E-value=1.6e+02 Score=24.25 Aligned_cols=88 Identities=18% Similarity=0.213 Sum_probs=54.7
Q ss_pred CeEEEEecCCCeEEEEEecCCCceeccceeeeC----C-C----C--C------hhhHHHHHHHHHHhhCCCEE-EEecc
Q 030251 26 GRFLGLDVGDKYVGLSISDPKNKIASPLSVLLR----K-K----N--T------IDLMAEDFRSLISEFNLEGF-IVGYP 87 (180)
Q Consensus 26 ~~iLalD~G~kriGvAvsd~~~~~a~Pl~~i~~----~-~----~--~------~~~~~~~L~~li~e~~i~~i-VVGlP 87 (180)
+++-+||.|+-.|=+.|.+.......++..... . . . + .-..+....+++++++++.+ +|+
T Consensus 4 ~~~A~IDiGSNsirL~I~~~~~~~~~~i~~~k~~vrLg~g~~~~g~ls~eai~r~~~~L~~f~~~~~~~~v~~v~~vA-- 81 (315)
T 3mdq_A 4 QRIGVIDMGTNTFHLLITDIVNDRPHTLVNEKSAVGLGKGGITKGFITEEAMDRALDTLKKFRVILDEHAVVHVIATG-- 81 (315)
T ss_dssp CEEEEEEECSSEEEEEEEEEETTEEEEEEEEEEECCSSTTTGGGTCCCHHHHHHHHHHHHHHHHHHHHTTCCEEEEEE--
T ss_pred ceEEEEEecCCcEEEEEEEEcCCceEEeeeceeeeeccccccccCCcCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEe--
Confidence 578899999999999998754322222222110 0 0 0 0 01235677788888999866 466
Q ss_pred cCCCCCch-HHHHHHHHHHHHHhccCCCCCcEEEec
Q 030251 88 FNRQQNAA-DAVQVKLFIDDLSATKKLEDMKYAYWN 122 (180)
Q Consensus 88 ~~dG~~s~-~~~~v~~F~~~L~~~~~~~~lpV~~~D 122 (180)
|..- .+.....|.+++++. . +++|..++
T Consensus 82 ----TsA~R~A~N~~~fl~~i~~~--t-G~~i~vIs 110 (315)
T 3mdq_A 82 ----TSAVRSGSNKQVLIDRIKKE--V-NIDVEVID 110 (315)
T ss_dssp ----CHHHHHCTTHHHHHHHHHHH--H-CCCEEECC
T ss_pred ----eHHHHcCcCHHHHHHHHHHH--H-CCCeEEeC
Confidence 4322 234457899999874 3 88888886
No 202
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=23.11 E-value=1.6e+02 Score=19.10 Aligned_cols=61 Identities=5% Similarity=-0.019 Sum_probs=36.9
Q ss_pred HHHHHHHHhhCCCEEEEecccCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEecccccHHHHHHHhc
Q 030251 68 EDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLN 135 (180)
Q Consensus 68 ~~L~~li~e~~i~~iVVGlP~~dG~~s~~~~~v~~F~~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l~ 135 (180)
.+..+.+.+..++.+++.+-+. +..+ ..+.+.|++....+.+||+++-..-+...+.+.+.
T Consensus 39 ~~a~~~~~~~~~dlvi~D~~l~-~~~g------~~l~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~ 99 (128)
T 1jbe_A 39 VDALNKLQAGGYGFVISDWNMP-NMDG------LELLKTIRAXXAMSALPVLMVTAEAKKENIIAAAQ 99 (128)
T ss_dssp HHHHHHHTTCCCCEEEEESCCS-SSCH------HHHHHHHHC--CCTTCCEEEEESSCCHHHHHHHHH
T ss_pred HHHHHHHHhcCCCEEEEeCCCC-CCCH------HHHHHHHHhhcccCCCcEEEEecCccHHHHHHHHH
Confidence 3344556777899999997554 2222 24666776521235789988876666655555543
No 203
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=22.92 E-value=1.6e+02 Score=19.10 Aligned_cols=61 Identities=7% Similarity=0.010 Sum_probs=38.1
Q ss_pred HHHHHHHHhhCCCEEEEecccCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEecccccHHHHHHHhc
Q 030251 68 EDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLN 135 (180)
Q Consensus 68 ~~L~~li~e~~i~~iVVGlP~~dG~~s~~~~~v~~F~~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l~ 135 (180)
.+..+.+.+..++.+++.+-+. +..+ ..+.+.|++....+.+||+++-..-+...+.+.+.
T Consensus 41 ~~a~~~~~~~~~dlvl~D~~l~-~~~g------~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~ 101 (129)
T 1p6q_A 41 EQGMKIMAQNPHHLVISDFNMP-KMDG------LGLLQAVRANPATKKAAFIILTAQGDRALVQKAAA 101 (129)
T ss_dssp HHHHHHHHTSCCSEEEECSSSC-SSCH------HHHHHHHTTCTTSTTCEEEECCSCCCHHHHHHHHH
T ss_pred HHHHHHHHcCCCCEEEEeCCCC-CCCH------HHHHHHHhcCccccCCCEEEEeCCCCHHHHHHHHH
Confidence 4445566778899999986554 2222 24667777532235789998876666655555543
No 204
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=22.87 E-value=61 Score=22.24 Aligned_cols=21 Identities=5% Similarity=0.126 Sum_probs=18.5
Q ss_pred HHHHHH-HHHhhCCCEEEEecc
Q 030251 67 AEDFRS-LISEFNLEGFIVGYP 87 (180)
Q Consensus 67 ~~~L~~-li~e~~i~~iVVGlP 87 (180)
.+.|.+ .+++++++.||+|-.
T Consensus 96 ~~~I~~~~a~~~~~dliV~G~~ 117 (146)
T 3s3t_A 96 KHTIEDYAKQHPEIDLIVLGAT 117 (146)
T ss_dssp HHHHHHHHHHSTTCCEEEEESC
T ss_pred HHHHHHHHHhhcCCCEEEECCC
Confidence 588888 899999999999954
No 205
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=22.65 E-value=2.7e+02 Score=21.49 Aligned_cols=44 Identities=14% Similarity=0.206 Sum_probs=26.4
Q ss_pred HHHHHHHHhhCCCEEEEecccCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEecccc
Q 030251 68 EDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGF 125 (180)
Q Consensus 68 ~~L~~li~e~~i~~iVVGlP~~dG~~s~~~~~v~~F~~~L~~~~~~~~lpV~~~DEr~ 125 (180)
..+.+.+.+.++++||+- |.. .+. ...+.+.+. ++||+++|...
T Consensus 73 ~~~~~~l~~~~vdgiIi~-~~~---~~~------~~~~~l~~~----~iPvV~i~~~~ 116 (305)
T 3huu_A 73 HEVKTMIQSKSVDGFILL-YSL---KDD------PIEHLLNEF----KVPYLIVGKSL 116 (305)
T ss_dssp HHHHHHHHTTCCSEEEES-SCB---TTC------HHHHHHHHT----TCCEEEESCCC
T ss_pred HHHHHHHHhCCCCEEEEe-CCc---CCc------HHHHHHHHc----CCCEEEECCCC
Confidence 456666777899999985 322 111 233455542 67888777543
No 206
>2vtf_A Endo-beta-N-acetylglucosaminidase; hydrolase, family 85, glycosidase, carbohydrat binding; HET: B3P PGE; 1.79A {Arthrobacter protophormiae} PDB: 3fhq_A* 3fha_A*
Probab=22.60 E-value=2.4e+02 Score=25.98 Aligned_cols=57 Identities=14% Similarity=0.334 Sum_probs=43.2
Q ss_pred hHHHHHHHHHHhhCCCEEEEecccCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEecc
Q 030251 65 LMAEDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNE 123 (180)
Q Consensus 65 ~~~~~L~~li~e~~i~~iVVGlP~~dG~~s~~~~~v~~F~~~L~~~~~~~~lpV~~~DE 123 (180)
.++++|.++.+.|+.|++.|-.=- ++...+.....+.|.+.|++.. .++..|++.|=
T Consensus 156 ~~a~kLv~~a~~yGFDGw~IN~E~-~~~~~~~~~~l~~F~~~L~~~~-~~~~~v~WYDs 212 (626)
T 2vtf_A 156 PLADKLLEVADYYGFDGWFINQQT-EGADEGTAEAMQAFLVYLQEQK-PEGMHIMWYDS 212 (626)
T ss_dssp HHHHHHHHHHHHHTCCEEEEEECC-TTCCHHHHHHHHHHHHHHHHHS-CTTCEEEEESC
T ss_pred HHHHHHHHHHHHhCCCceEEeecc-ccCCHHHHHHHHHHHHHHHHhC-CCCcEEEEeec
Confidence 357999999999999999887422 2334567888899999998852 34577888874
No 207
>3hi0_A Putative exopolyphosphatase; 17739545, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 2.30A {Agrobacterium tumefaciens str}
Probab=22.57 E-value=3e+02 Score=24.23 Aligned_cols=90 Identities=16% Similarity=0.125 Sum_probs=57.5
Q ss_pred CCCeEEEEecCCCeEEEEEecCCCceeccceeee---C-CC-------CCh---h---hHHHHHHHHHHhhCCCEEE-Ee
Q 030251 24 KRGRFLGLDVGDKYVGLSISDPKNKIASPLSVLL---R-KK-------NTI---D---LMAEDFRSLISEFNLEGFI-VG 85 (180)
Q Consensus 24 ~~~~iLalD~G~kriGvAvsd~~~~~a~Pl~~i~---~-~~-------~~~---~---~~~~~L~~li~e~~i~~iV-VG 85 (180)
...++-+||.|+-.+=+-|.+.......++.... + .. -+. + ..+....++++.++++.+. |+
T Consensus 13 ~~~~~AaIDiGSNS~rL~I~~~~~~~~~~~~~~k~~vrLg~gl~~~g~Ls~eai~r~~~~L~~F~~~~~~~~v~~v~~vA 92 (508)
T 3hi0_A 13 GLAPVSVIDIGSNSVRLVVYEGLSRAPAVLFNEKVLCGLGKGLALTGRMHEEGVTRALMALRRFHVLSEQAQAQKLYVLA 92 (508)
T ss_dssp TCCCEEEEEECSSEEEEEEESCSSSSCCEEEEEEEECCTTTTHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTCSEEEEEE
T ss_pred cCCeEEEEEECCccEEEEEEEEcCCCceEEEEEeEEeecccCccccCCcCHHHHHHHHHHHHHHHHHHHhCCCCeEEEEe
Confidence 4467889999999999999986543323332211 0 00 010 1 2356677788899998764 55
Q ss_pred cccCCCCCc-hHHHHHHHHHHHHHhccCCCCCcEEEec
Q 030251 86 YPFNRQQNA-ADAVQVKLFIDDLSATKKLEDMKYAYWN 122 (180)
Q Consensus 86 lP~~dG~~s-~~~~~v~~F~~~L~~~~~~~~lpV~~~D 122 (180)
|.. ..+.....|.+++++. . |++|..++
T Consensus 93 ------TsA~R~A~N~~~fl~~i~~~--t-G~~ievIs 121 (508)
T 3hi0_A 93 ------TAAAREAENGPDFIREAEAI--L-GCEIEVLS 121 (508)
T ss_dssp ------CTHHHHSTTHHHHHHHHHHH--H-TSCEEECC
T ss_pred ------eHHHHcCcCHHHHHHHHHHH--H-CCCeEEec
Confidence 433 2244557899999974 3 88988886
No 208
>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis}
Probab=22.48 E-value=2.1e+02 Score=23.88 Aligned_cols=50 Identities=14% Similarity=0.108 Sum_probs=33.3
Q ss_pred HHHHHHHHHhhCCCEEEEecccC-CCCCchHHHHHHHHHHHHHhccCCCCCcEEEecccccH
Q 030251 67 AEDFRSLISEFNLEGFIVGYPFN-RQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTS 127 (180)
Q Consensus 67 ~~~L~~li~e~~i~~iVVGlP~~-dG~~s~~~~~v~~F~~~L~~~~~~~~lpV~~~DEr~TT 127 (180)
++.|.+.+.+.++..|+++.|.+ .+. + .+++++..++. ++ ++.+||-+++
T Consensus 174 ~~~l~~~i~~~~~~~i~~~~~~~~~~~--~----l~~i~~l~~~~----g~-lli~Dea~~~ 224 (447)
T 3h7f_A 174 MDAVRATALEFRPKVIIAGWSAYPRVL--D----FAAFRSIADEV----GA-KLLVDMAHFA 224 (447)
T ss_dssp HHHHHHHHHHHCCSEEEEECSSCCSCC--C----HHHHHHHHHHH----TC-EEEEECTTTH
T ss_pred HHHHHHHHHhcCCeEEEEcCCCCCCcc--C----HHHHHHHHHHc----CC-EEEEECCchh
Confidence 68899999888899999988887 443 2 23344444442 33 5678997544
No 209
>3c6a_A Terminase large subunit; terminase nuclease, viral protein; 1.16A {Enterobacteria phage RB49} PDB: 3c6h_A
Probab=22.42 E-value=2.9e+02 Score=21.91 Aligned_cols=60 Identities=15% Similarity=0.161 Sum_probs=39.1
Q ss_pred CCCCeEEEEecCC----CeEEEEEecCCCceecccee---eeCCCCChhhHHHHHHHHHHhhCCCEEEEe
Q 030251 23 SKRGRFLGLDVGD----KYVGLSISDPKNKIASPLSV---LLRKKNTIDLMAEDFRSLISEFNLEGFIVG 85 (180)
Q Consensus 23 ~~~~~iLalD~G~----kriGvAvsd~~~~~a~Pl~~---i~~~~~~~~~~~~~L~~li~e~~i~~iVVG 85 (180)
+....++|+|.+. ....+-|-|..+ .|... ...+......+.+.+.++...|+...|+|=
T Consensus 57 ~~~~YvigvD~A~g~~~DySv~~V~d~t~---~p~~~Va~~r~n~i~~~~la~~V~~l~~~yn~a~v~VE 123 (232)
T 3c6a_A 57 EGRKYVATLDCSEGRGQDYHALQIIDITE---FPYKQVAVYHSNTTSHFILPDIVFKYLMMYNECPVYIE 123 (232)
T ss_dssp TTCCEEEEEECCCSSSSCCEEEEEEECSS---SSEEEEEEEEESCCCTTTHHHHHHHHHHHTTSCCEEEB
T ss_pred CCCeEEEEEEcCCCCCCCCcEEEEEEecC---CcceEEEEeecCccCHHHHHHHHHHHHHHhCCCEEEEe
Confidence 4556889999997 555555656433 23333 332223344567788899999998888885
No 210
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=22.40 E-value=1.6e+02 Score=18.89 Aligned_cols=58 Identities=9% Similarity=-0.035 Sum_probs=31.4
Q ss_pred HHHHHHHhhCCCEEEEecccCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEecccccHHHHHHH
Q 030251 69 DFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELL 133 (180)
Q Consensus 69 ~L~~li~e~~i~~iVVGlP~~dG~~s~~~~~v~~F~~~L~~~~~~~~lpV~~~DEr~TT~~A~~~ 133 (180)
+..+.+.+..++.+++.+-+. +..+ ..+.+.|++....+.+||+++-...+...+.+.
T Consensus 36 ~a~~~~~~~~~dlvi~D~~l~-~~~g------~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~ 93 (124)
T 1mb3_A 36 SALSIARENKPDLILMDIQLP-EISG------LEVTKWLKEDDDLAHIPVVAVTAFAMKGDEERI 93 (124)
T ss_dssp HHHHHHHHHCCSEEEEESBCS-SSBH------HHHHHHHHHSTTTTTSCEEEEC------CHHHH
T ss_pred HHHHHHhcCCCCEEEEeCCCC-CCCH------HHHHHHHHcCccccCCcEEEEECCCCHHHHHHH
Confidence 334556677899999997655 2222 246666765322357899888655444333333
No 211
>3oc6_A 6-phosphogluconolactonase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, carboxylic ester hydrolase; 2.10A {Mycobacterium smegmatis}
Probab=22.33 E-value=85 Score=25.05 Aligned_cols=37 Identities=5% Similarity=0.030 Sum_probs=21.3
Q ss_pred EEEEecccCCCCCchHHHHHHHHHHHHHh---ccCCCCCcEEEecccc
Q 030251 81 GFIVGYPFNRQQNAADAVQVKLFIDDLSA---TKKLEDMKYAYWNEGF 125 (180)
Q Consensus 81 ~iVVGlP~~dG~~s~~~~~v~~F~~~L~~---~~~~~~lpV~~~DEr~ 125 (180)
.+++|+ .|..++. .+-+.|.+ ...+..+-+++.|||+
T Consensus 40 ~~~l~L---sgGstP~-----~~y~~L~~~~~~idw~~v~~f~~DEr~ 79 (248)
T 3oc6_A 40 QATIVL---TGGGTGI-----GLLKRVRERSGEIDWSKVHIYWGDERF 79 (248)
T ss_dssp CEEEEE---CCSHHHH-----HHHHHHHHTGGGSCGGGEEEEESEEEC
T ss_pred CEEEEE---CCCccHH-----HHHHHHHhhccCCCcceEEEEEeeecc
Confidence 467776 4555542 23333433 1234567789999987
No 212
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=22.27 E-value=2.3e+02 Score=20.61 Aligned_cols=62 Identities=5% Similarity=-0.108 Sum_probs=38.8
Q ss_pred HHHHHHHHhhCCCEEEEecccCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEecccccHHHHHHHhccCCC
Q 030251 68 EDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDL 139 (180)
Q Consensus 68 ~~L~~li~e~~i~~iVVGlP~~dG~~s~~~~~v~~F~~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l~~~g~ 139 (180)
.+..+.+.+..++.+++.+-+. +..+ ..+.+.|++. .+++||+++-..-+...+.+.+ +.|.
T Consensus 36 ~~a~~~~~~~~~dlvllD~~l~-~~~g------~~~~~~lr~~--~~~~~ii~ls~~~~~~~~~~~~-~~ga 97 (225)
T 1kgs_A 36 EEGMYMALNEPFDVVILDIMLP-VHDG------WEILKSMRES--GVNTPVLMLTALSDVEYRVKGL-NMGA 97 (225)
T ss_dssp HHHHHHHHHSCCSEEEEESCCS-SSCH------HHHHHHHHHT--TCCCCEEEEESSCHHHHHHHTC-CCCC
T ss_pred HHHHHHHhcCCCCEEEEeCCCC-CCCH------HHHHHHHHhc--CCCCCEEEEeCCCCHHHHHHHH-hCCc
Confidence 3344566778899999997554 2222 2466777763 4689999887665555555544 3444
No 213
>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A*
Probab=22.24 E-value=1.3e+02 Score=22.13 Aligned_cols=37 Identities=27% Similarity=0.241 Sum_probs=25.5
Q ss_pred HHHHHHHHhhCCCEEEEecccCCCCCchHHHHHHHHHHHHHh
Q 030251 68 EDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSA 109 (180)
Q Consensus 68 ~~L~~li~e~~i~~iVVGlP~~dG~~s~~~~~v~~F~~~L~~ 109 (180)
.++.+.+. +.|.||+|-|..+++... ..+.|.+++..
T Consensus 64 ~~~~~~l~--~aD~ii~~sP~y~~~~p~---~lK~~iD~~~~ 100 (193)
T 1rtt_A 64 ERFREQIR--AADALLFATPEYNYSMAG---VLKNAIDWASR 100 (193)
T ss_dssp HHHHHHHH--HCSEEEEECCEETTEECH---HHHHHHHHHTC
T ss_pred HHHHHHHH--hCCEEEEEccccccCcCH---HHHHHHHHhcc
Confidence 44444444 579999999999665554 35678888863
No 214
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=22.12 E-value=2.2e+02 Score=20.30 Aligned_cols=59 Identities=10% Similarity=0.019 Sum_probs=38.4
Q ss_pred HHHHHHHHhhCCCEEEEecccCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEecccccHHHHHHHhc
Q 030251 68 EDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLN 135 (180)
Q Consensus 68 ~~L~~li~e~~i~~iVVGlP~~dG~~s~~~~~v~~F~~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l~ 135 (180)
.+..+.+.+..++.|++.+-+. |..+ ..+.+.+++. .+.+||+++-..-+...+.+.+.
T Consensus 41 ~~al~~~~~~~~dlvl~D~~lp-~~~g------~~~~~~l~~~--~~~~~ii~lt~~~~~~~~~~a~~ 99 (184)
T 3rqi_A 41 DEALKLAGAEKFEFITVXLHLG-NDSG------LSLIAPLCDL--QPDARILVLTGYASIATAVQAVK 99 (184)
T ss_dssp HHHHHHHTTSCCSEEEECSEET-TEES------HHHHHHHHHH--CTTCEEEEEESSCCHHHHHHHHH
T ss_pred HHHHHHHhhCCCCEEEEeccCC-CccH------HHHHHHHHhc--CCCCCEEEEeCCCCHHHHHHHHH
Confidence 4445566788999999987655 1112 2466666653 46899998877666666655554
No 215
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=22.01 E-value=1.2e+02 Score=20.29 Aligned_cols=65 Identities=8% Similarity=0.096 Sum_probs=40.2
Q ss_pred HHHHHHHHh-hCCCEEEEecccCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEecccccHHHHHHHhccCCC
Q 030251 68 EDFRSLISE-FNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDL 139 (180)
Q Consensus 68 ~~L~~li~e-~~i~~iVVGlP~~dG~~s~~~~~v~~F~~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l~~~g~ 139 (180)
.+..+.+.+ ..++.||+.+-+.++. ....+.+.|++....+.+||+++-...+...+.+.+. .|.
T Consensus 39 ~~a~~~l~~~~~~dlvi~D~~l~~~~------~g~~~~~~l~~~~~~~~~~ii~ls~~~~~~~~~~~~~-~g~ 104 (140)
T 3lua_A 39 KKFYSIFKDLDSITLIIMDIAFPVEK------EGLEVLSAIRNNSRTANTPVIIATKSDNPGYRHAALK-FKV 104 (140)
T ss_dssp HHHHTTTTTCCCCSEEEECSCSSSHH------HHHHHHHHHHHSGGGTTCCEEEEESCCCHHHHHHHHH-SCC
T ss_pred HHHHHHHhcCCCCcEEEEeCCCCCCC------cHHHHHHHHHhCcccCCCCEEEEeCCCCHHHHHHHHH-cCC
Confidence 455566677 8899999985332011 1235667777621245899998887777666665553 343
No 216
>1fs5_A Glucosamine-6-phosphate deaminase; allosteric enzyme, entropic effects, aldose-ketose isomerase multiple conformers, isomerase; HET: 16G TLA; 1.73A {Escherichia coli} SCOP: c.124.1.1 PDB: 1cd5_A 1fqo_A* 1frz_A* 1dea_A* 1fs6_A 1fsf_A 1hor_A* 1hot_A* 2wu1_A* 1jt9_A
Probab=21.92 E-value=1.5e+02 Score=23.41 Aligned_cols=55 Identities=15% Similarity=0.158 Sum_probs=27.0
Q ss_pred HHHHHHHHHhhC---CCEEEEecccCCCCCchHHHHHHHHHHHHHhc-cCCCCCcEEEecccc
Q 030251 67 AEDFRSLISEFN---LEGFIVGYPFNRQQNAADAVQVKLFIDDLSAT-KKLEDMKYAYWNEGF 125 (180)
Q Consensus 67 ~~~L~~li~e~~---i~~iVVGlP~~dG~~s~~~~~v~~F~~~L~~~-~~~~~lpV~~~DEr~ 125 (180)
.+.|.+.+++.. =...+||+ .|..++. ...+.+++...+. ..+.++.+++.|||+
T Consensus 17 A~~l~~~l~~~~~~~~~~~~i~l---sgGsTp~-~~~~~L~~~~~~~~~~~~~v~v~~ldEr~ 75 (266)
T 1fs5_A 17 ARHIVNRINAFKPTADRPFVLGL---PTGGTPM-TTYKALVEMHKAGQVSFKHVVTFNMDEYV 75 (266)
T ss_dssp HHHHHHHHHHHCCCSSSCEEEEE---CCSSTTH-HHHHHHHHHHHTTSCCCTTEEEEESEEES
T ss_pred HHHHHHHHHHhhhcccCceEEEE---cCCCCHH-HHHHHHHHHhhcCCCChHHeEEEeCeecc
Confidence 456666666521 12466775 3444431 2222333221111 124567788889987
No 217
>1rli_A Trp repressor binding protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bacillus subtilis} SCOP: c.23.5.6
Probab=21.79 E-value=1.2e+02 Score=21.91 Aligned_cols=28 Identities=29% Similarity=0.289 Sum_probs=20.0
Q ss_pred CCCEEEEecccCCCCCchHHHHHHHHHHHHH
Q 030251 78 NLEGFIVGYPFNRQQNAADAVQVKLFIDDLS 108 (180)
Q Consensus 78 ~i~~iVVGlP~~dG~~s~~~~~v~~F~~~L~ 108 (180)
+.|.||+|-|...|+...+. +.|.+++.
T Consensus 71 ~aD~ii~~~P~y~~~~p~~l---K~~iD~~~ 98 (184)
T 1rli_A 71 QCHILIFATPIYWFGMSGTL---KLFIDRWS 98 (184)
T ss_dssp TCSEEEEEEECBTTBCCHHH---HHHHHTHH
T ss_pred hCCEEEEEeCccccCCcHHH---HHHHHHhH
Confidence 68999999999966666543 45655553
No 218
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=21.74 E-value=1.8e+02 Score=19.04 Aligned_cols=87 Identities=6% Similarity=-0.045 Sum_probs=45.4
Q ss_pred HHHHHHHHhhCCCEEEEecccCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEecccccHHHHHHHhccCCCCCCCCCCC
Q 030251 68 EDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKTI 147 (180)
Q Consensus 68 ~~L~~li~e~~i~~iVVGlP~~dG~~s~~~~~v~~F~~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l~~~g~~~~~~k~~ 147 (180)
++..+.+.+..++.|++.+-+. +..+ ..+.+.|++....+++||+++-...+... .. ....|...--. ++
T Consensus 37 ~~a~~~l~~~~~dlvi~d~~l~-~~~g------~~~~~~l~~~~~~~~~pii~~s~~~~~~~-~~-~~~~g~~~~l~-KP 106 (133)
T 3nhm_A 37 ASGLQQALAHPPDVLISDVNMD-GMDG------YALCGHFRSEPTLKHIPVIFVSGYAPRTE-GP-ADQPVPDAYLV-KP 106 (133)
T ss_dssp HHHHHHHHHSCCSEEEECSSCS-SSCH------HHHHHHHHHSTTTTTCCEEEEESCCC-------TTSCCCSEEEE-SS
T ss_pred HHHHHHHhcCCCCEEEEeCCCC-CCCH------HHHHHHHHhCCccCCCCEEEEeCCCcHhH-HH-HhhcCCceEEe-cc
Confidence 4455667778999999997554 2222 35677777632245789988876555444 32 33344332111 24
Q ss_pred CcHHHHHHHHHHHHhhh
Q 030251 148 LDKFAAVGILQEYLDNA 164 (180)
Q Consensus 148 iD~~AA~iILq~yL~~~ 164 (180)
++.-.=.-.++..|...
T Consensus 107 ~~~~~l~~~i~~~l~~~ 123 (133)
T 3nhm_A 107 VKPPVLIAQLHALLARA 123 (133)
T ss_dssp CCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhh
Confidence 44333333445555443
No 219
>2hpv_A FMN-dependent NADH-azoreductase; structural genomics, PS protein structure initiative, southeast collaboratory for S genomics, secsg; HET: FMN; 2.00A {Enterococcus faecalis}
Probab=21.69 E-value=1.2e+02 Score=22.59 Aligned_cols=29 Identities=10% Similarity=0.336 Sum_probs=22.2
Q ss_pred CCCEEEEecccCCCCCchHHHHHHHHHHHHHh
Q 030251 78 NLEGFIVGYPFNRQQNAADAVQVKLFIDDLSA 109 (180)
Q Consensus 78 ~i~~iVVGlP~~dG~~s~~~~~v~~F~~~L~~ 109 (180)
+.|.||+|-|..+++.+.+ .+.|.+++..
T Consensus 94 ~aD~iv~~~P~y~~~~pa~---lK~~iD~~~~ 122 (208)
T 2hpv_A 94 SADKVVIANPMWNLNVPTR---LKAWVDTINV 122 (208)
T ss_dssp HCSEEEEEEECBTTBCCHH---HHHHHHHHCC
T ss_pred hCCEEEEEeccccCCCCHH---HHHHHHHHhc
Confidence 5899999999996666654 4578888753
No 220
>3vzx_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; 1.54A {Bacillus subtilis} PDB: 3vzy_A* 3vzz_A* 3w00_A* 1viz_A
Probab=21.68 E-value=1.3e+02 Score=24.10 Aligned_cols=38 Identities=11% Similarity=0.145 Sum_probs=30.4
Q ss_pred HhhCCCEEEEecccCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEe
Q 030251 75 SEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYW 121 (180)
Q Consensus 75 ~e~~i~~iVVGlP~~dG~~s~~~~~v~~F~~~L~~~~~~~~lpV~~~ 121 (180)
.+...|.|.|| |+.+-....+.+..+++++ + ++|+++.
T Consensus 28 ~~~GtD~i~vG-----Gs~gvt~~~~~~~v~~ik~---~-~~Pvvlf 65 (228)
T 3vzx_A 28 CESGTDAVIIG-----GSDGVTEDNVLRMMSKVRR---F-LVPCVLE 65 (228)
T ss_dssp HTSSCSEEEEC-----CCSCCCHHHHHHHHHHHTT---S-SSCEEEE
T ss_pred HHcCCCEEEEC-----CcCCCCHHHHHHHHHHhhc---c-CCCEEEe
Confidence 57889999999 7766666788888899985 2 7898874
No 221
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=21.64 E-value=2.4e+02 Score=21.86 Aligned_cols=50 Identities=6% Similarity=-0.001 Sum_probs=31.9
Q ss_pred HHHHHHHHHhhCCCEEEEecccCCCCCchHHH-HHHHHHHHHHhccCCCCCcEEEecc
Q 030251 67 AEDFRSLISEFNLEGFIVGYPFNRQQNAADAV-QVKLFIDDLSATKKLEDMKYAYWNE 123 (180)
Q Consensus 67 ~~~L~~li~e~~i~~iVVGlP~~dG~~s~~~~-~v~~F~~~L~~~~~~~~lpV~~~DE 123 (180)
.+.|.+.+++++++.||+|- ...+...+ ..-..++.+-.. ..+||..+-.
T Consensus 240 ~~~I~~~a~~~~~dLlV~G~----~~~~~~~~~~~Gs~~~~vl~~---~~~pvLvv~~ 290 (294)
T 3loq_A 240 HKAILAKREEINATTIFMGS----RGAGSVMTMILGSTSESVIRR---SPVPVFVCKR 290 (294)
T ss_dssp HHHHHHHHHHTTCSEEEEEC----CCCSCHHHHHHHCHHHHHHHH---CSSCEEEECS
T ss_pred HHHHHHHHHhcCcCEEEEeC----CCCCCccceeeCcHHHHHHhc---CCCCEEEECC
Confidence 68899999999999999993 32332222 223445555543 2688887743
No 222
>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*
Probab=21.51 E-value=1.3e+02 Score=24.90 Aligned_cols=52 Identities=10% Similarity=0.100 Sum_probs=36.0
Q ss_pred HHHHHHHHHhh---CCCEEEEecccC-CCCCchHHHHHHHHHHHHHhccCCCCCcEEEecccccH
Q 030251 67 AEDFRSLISEF---NLEGFIVGYPFN-RQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTS 127 (180)
Q Consensus 67 ~~~L~~li~e~---~i~~iVVGlP~~-dG~~s~~~~~v~~F~~~L~~~~~~~~lpV~~~DEr~TT 127 (180)
++.|.+.+.+. ++..|++--|.+ .|...+ .++.++..++. ++ ++.+||-++.
T Consensus 180 ~~~le~~l~~~~~~~~~~v~~~~~~n~tG~~~~----l~~l~~l~~~~----g~-~li~Dea~~~ 235 (427)
T 2w8t_A 180 VEDLDKRLGRLPKEPAKLVVLEGVYSMLGDIAP----LKEMVAVAKKH----GA-MVLVDEAHSM 235 (427)
T ss_dssp HHHHHHHHHTSCSSSCEEEEEESEETTTTEECC----HHHHHHHHHHT----TC-EEEEECTTTT
T ss_pred HHHHHHHHHhccCCCCeEEEEcCCCCCCCCccC----HHHHHHHHHHc----CC-EEEEECCccc
Confidence 57888888875 678899988888 887765 33444444442 44 5667888774
No 223
>2q8u_A Exonuclease, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.20A {Thermotoga maritima MSB8} PDB: 3thn_A
Probab=21.32 E-value=2.4e+02 Score=22.69 Aligned_cols=51 Identities=4% Similarity=0.025 Sum_probs=32.4
Q ss_pred HHHHHHHHHHhhCCCEEEEecc-cC-CCCCchHH-HHHHHHHHHHHhccCCCCCcEEEe
Q 030251 66 MAEDFRSLISEFNLEGFIVGYP-FN-RQQNAADA-VQVKLFIDDLSATKKLEDMKYAYW 121 (180)
Q Consensus 66 ~~~~L~~li~e~~i~~iVVGlP-~~-dG~~s~~~-~~v~~F~~~L~~~~~~~~lpV~~~ 121 (180)
.++++.+.+.+.+++.||+.-= +. .+..+..+ ..+.+|.++|.+ .+||+++
T Consensus 49 ~l~~lv~~~~~~~~D~vliaGD~l~d~~~~~~~~~~~~~~~l~~L~~-----~~pv~~i 102 (336)
T 2q8u_A 49 ALDKVVEEAEKREVDLILLTGDLLHSRNNPSVVALHDLLDYLKRMMR-----TAPVVVL 102 (336)
T ss_dssp HHHHHHHHHHHHTCSEEEEESCSBSCSSCCCHHHHHHHHHHHHHHHH-----HSCEEEC
T ss_pred HHHHHHHHHHHhCCCEEEECCccccCCCCCCHHHHHHHHHHHHHHHh-----cCCEEEE
Confidence 4688888888899999988754 44 34444432 334555555653 1577766
No 224
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=21.30 E-value=1.7e+02 Score=18.69 Aligned_cols=59 Identities=8% Similarity=0.005 Sum_probs=36.8
Q ss_pred HHHHHHHHhhCCCEEEEecccCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEecccccHHHHHHHhc
Q 030251 68 EDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLN 135 (180)
Q Consensus 68 ~~L~~li~e~~i~~iVVGlP~~dG~~s~~~~~v~~F~~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l~ 135 (180)
.+..+.+.+..++.+++.+-+. +..+ ..+.+.+++. .+.+||+++-..-+...+.+.+.
T Consensus 34 ~~a~~~~~~~~~dlil~D~~l~-~~~g------~~~~~~l~~~--~~~~~ii~~s~~~~~~~~~~~~~ 92 (121)
T 2pl1_A 34 KEADYYLNEHIPDIAIVDLGLP-DEDG------LSLIRRWRSN--DVSLPILVLTARESWQDKVEVLS 92 (121)
T ss_dssp HHHHHHHHHSCCSEEEECSCCS-SSCH------HHHHHHHHHT--TCCSCEEEEESCCCHHHHHHHHH
T ss_pred HHHHHHHhccCCCEEEEecCCC-CCCH------HHHHHHHHhc--CCCCCEEEEecCCCHHHHHHHHH
Confidence 3445566678899999986443 2222 2466667653 45789988876666655555543
No 225
>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A*
Probab=21.20 E-value=2.3e+02 Score=23.15 Aligned_cols=55 Identities=11% Similarity=0.170 Sum_probs=37.7
Q ss_pred HHHHHHHHHhh-----CCCEEEEecccC-CCCCchHHHHHHHHHHHHHhccCCCCCcEEEecccccH
Q 030251 67 AEDFRSLISEF-----NLEGFIVGYPFN-RQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTS 127 (180)
Q Consensus 67 ~~~L~~li~e~-----~i~~iVVGlP~~-dG~~s~~~~~v~~F~~~L~~~~~~~~lpV~~~DEr~TT 127 (180)
++.|.+.++++ ++..|++--|-| .|..-+. ..++++++..++. ++ ++.+||-++-
T Consensus 172 ~~~l~~~l~~~~~~~~~~~~v~l~~p~nptG~~~~~-~~l~~l~~~~~~~----~~-~li~Dea~~~ 232 (428)
T 1iay_A 172 SKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDK-DTLKSVLSFTNQH----NI-HLVCDEIYAA 232 (428)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCH-HHHHHHHHHHHTT----TC-EEEEECTTGG
T ss_pred HHHHHHHHHHHHhcCCceEEEEEcCCCCCCCCcCCH-HHHHHHHHHHHHC----Ce-EEEEeccccc
Confidence 57787777753 678889999988 8876543 4566677766552 54 4567887763
No 226
>3hn6_A Glucosamine-6-phosphate deaminase; niaid, ssgcid, decode, UW, SBRI, infectious disease, LYME DI non-hodgkin lymphomas, neuroborreliosis; 2.20A {Borrelia burgdorferi}
Probab=21.17 E-value=1.5e+02 Score=24.30 Aligned_cols=56 Identities=18% Similarity=0.173 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhhCCC---EEEEecccCCCCCchHHHHHHHHHHHHHh-ccCCCCCcEEEecccc
Q 030251 66 MAEDFRSLISEFNLE---GFIVGYPFNRQQNAADAVQVKLFIDDLSA-TKKLEDMKYAYWNEGF 125 (180)
Q Consensus 66 ~~~~L~~li~e~~i~---~iVVGlP~~dG~~s~~~~~v~~F~~~L~~-~~~~~~lpV~~~DEr~ 125 (180)
+.+.|.+.+++...+ .+++|+ .|..++.. ..+.+++..++ ...+..+-+++.|||+
T Consensus 37 aA~~i~~~i~~a~~~~~~~~~l~L---sgGsTP~~-~y~~L~~~~~~~~idw~~v~~f~~DEr~ 96 (289)
T 3hn6_A 37 AANHVAQKINEFSPTKENPFILGL---PTGSSPIG-MYKNLIELNKNKKISFQNVITFNMDEYI 96 (289)
T ss_dssp HHHHHHHHHHHHCCBTTBCEEEEE---CCSSTTHH-HHHHHHHHHHTTSCCCTTEEEEESEEES
T ss_pred HHHHHHHHHHHHhhccCCcEEEEE---CCCccHHH-HHHHHHHhHhhcCCCchheEEEeCccee
Confidence 345666666653322 378887 45555421 22334443332 1235577789999997
No 227
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=21.11 E-value=1.7e+02 Score=22.59 Aligned_cols=45 Identities=4% Similarity=-0.106 Sum_probs=25.8
Q ss_pred HHHHHHHHhhCCCEEEEecccC-CCCCchHHHHHHHHHHHHHhccCCCCCcEEEeccccc
Q 030251 68 EDFRSLISEFNLEGFIVGYPFN-RQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFT 126 (180)
Q Consensus 68 ~~L~~li~e~~i~~iVVGlP~~-dG~~s~~~~~v~~F~~~L~~~~~~~~lpV~~~DEr~T 126 (180)
+.+..++ ..++++||+. |.+ +.. ....+.+.+. ++||+++|....
T Consensus 52 ~~i~~l~-~~~vdgiii~-~~~~~~~--------~~~~~~~~~~----giPvV~~~~~~~ 97 (297)
T 3rot_A 52 QFIESAL-ATYPSGIATT-IPSDTAF--------SKSLQRANKL----NIPVIAVDTRPK 97 (297)
T ss_dssp HHHHHHH-HTCCSEEEEC-CCCSSTT--------HHHHHHHHHH----TCCEEEESCCCS
T ss_pred HHHHHHH-HcCCCEEEEe-CCCHHHH--------HHHHHHHHHC----CCCEEEEcCCCc
Confidence 4445444 4689999986 333 221 1234455542 688888875543
No 228
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=21.00 E-value=1.9e+02 Score=19.20 Aligned_cols=63 Identities=10% Similarity=0.052 Sum_probs=37.6
Q ss_pred HHHHHHHHhhCCCEEEEecccCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEecccccHHHHHHHhccCCC
Q 030251 68 EDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDL 139 (180)
Q Consensus 68 ~~L~~li~e~~i~~iVVGlP~~dG~~s~~~~~v~~F~~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l~~~g~ 139 (180)
.+..+.+.+..++.+++.+-+. |..+ ..+.+.|++. .+..|++++-...+...+.+.+...|.
T Consensus 34 ~~a~~~~~~~~~dlvl~D~~lp-~~~g------~~~~~~l~~~--~~~~~ii~~s~~~~~~~~~~~~~~~ga 96 (139)
T 2jk1_A 34 EAAIAILEEEWVQVIICDQRMP-GRTG------VDFLTEVRER--WPETVRIIITGYTDSASMMAAINDAGI 96 (139)
T ss_dssp HHHHHHHHHSCEEEEEEESCCS-SSCH------HHHHHHHHHH--CTTSEEEEEESCTTCHHHHHHHHHTTC
T ss_pred HHHHHHHhcCCCCEEEEeCCCC-CCcH------HHHHHHHHHh--CCCCcEEEEeCCCChHHHHHHHHhhch
Confidence 3444556677899999986544 2222 2456667653 457888887655555555555544443
No 229
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=20.95 E-value=1.9e+02 Score=22.27 Aligned_cols=45 Identities=9% Similarity=0.107 Sum_probs=24.4
Q ss_pred HHHHHHHHhhCCCEEEEecccCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEecccc
Q 030251 68 EDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGF 125 (180)
Q Consensus 68 ~~L~~li~e~~i~~iVVGlP~~dG~~s~~~~~v~~F~~~L~~~~~~~~lpV~~~DEr~ 125 (180)
+.+..+ ...++++||+- |.+ .... ....+++.+. ++||+++|...
T Consensus 52 ~~i~~l-~~~~vdgiIi~-~~~---~~~~----~~~~~~~~~~----~iPvV~~~~~~ 96 (305)
T 3g1w_A 52 TVLEQA-IAKNPAGIAIS-AID---PVEL----TDTINKAVDA----GIPIVLFDSGA 96 (305)
T ss_dssp HHHHHH-HHHCCSEEEEC-CSS---TTTT----HHHHHHHHHT----TCCEEEESSCC
T ss_pred HHHHHH-HHhCCCEEEEc-CCC---HHHH----HHHHHHHHHC----CCcEEEECCCC
Confidence 334444 44789999985 322 1111 1234455542 67888877543
No 230
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=20.68 E-value=1.9e+02 Score=18.98 Aligned_cols=49 Identities=2% Similarity=-0.141 Sum_probs=30.5
Q ss_pred HHHHHHHhhCCCEEEEecccCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEeccccc
Q 030251 69 DFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFT 126 (180)
Q Consensus 69 ~L~~li~e~~i~~iVVGlP~~dG~~s~~~~~v~~F~~~L~~~~~~~~lpV~~~DEr~T 126 (180)
+..+.+.+..++.+++.+-+. +..+ ..+.+.|++. .+.+||+++-..-+
T Consensus 38 ~a~~~~~~~~~dlvl~D~~l~-~~~g------~~~~~~l~~~--~~~~~ii~~s~~~~ 86 (136)
T 1mvo_A 38 EALKKAETEKPDLIVLDVMLP-KLDG------IEVCKQLRQQ--KLMFPILMLTAKDE 86 (136)
T ss_dssp HHHHHHHHHCCSEEEEESSCS-SSCH------HHHHHHHHHT--TCCCCEEEEECTTC
T ss_pred HHHHHHhhcCCCEEEEecCCC-CCCH------HHHHHHHHcC--CCCCCEEEEECCCC
Confidence 334556677899999997654 2222 2466777763 35788887744333
No 231
>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*
Probab=20.67 E-value=1.7e+02 Score=22.67 Aligned_cols=51 Identities=4% Similarity=-0.154 Sum_probs=34.1
Q ss_pred HHHHHHHHHhhCCCEEEEecccC-CCCCchHHHHHHHHHHHHHhccCCCCCcEEEeccccc
Q 030251 67 AEDFRSLISEFNLEGFIVGYPFN-RQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFT 126 (180)
Q Consensus 67 ~~~L~~li~e~~i~~iVVGlP~~-dG~~s~~~~~v~~F~~~L~~~~~~~~lpV~~~DEr~T 126 (180)
.+.|.+.+.++++..|++-.|-+ .|..-+. +++++..++. ++ .+.+||-++
T Consensus 113 ~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~----~~i~~l~~~~----~~-~li~D~a~~ 164 (353)
T 2yrr_A 113 PEAVARALKRRRYRMVALVHGETSTGVLNPA----EAIGALAKEA----GA-LFFLDAVTT 164 (353)
T ss_dssp HHHHHHHHHHSCCSEEEEESEETTTTEECCH----HHHHHHHHHH----TC-EEEEECTTT
T ss_pred HHHHHHHHHhCCCCEEEEEccCCCcceecCH----HHHHHHHHHc----CC-eEEEEcCcc
Confidence 57888888766788999988888 8876652 3444444442 43 456788764
No 232
>3cer_A Possible exopolyphosphatase-like protein; NESG, BLR13, Q8G5J2, X-RAY, structure, structural genomics, PSI-2; 2.40A {Bifidobacterium longum NCC2705}
Probab=20.58 E-value=1.3e+02 Score=25.10 Aligned_cols=90 Identities=21% Similarity=0.357 Sum_probs=54.1
Q ss_pred CCCeEEEEecCCCeEEEEEecCC-CceeccceeeeC----CC-----C--Ch------hhHHHHHHHHHHhhCCCEE-EE
Q 030251 24 KRGRFLGLDVGDKYVGLSISDPK-NKIASPLSVLLR----KK-----N--TI------DLMAEDFRSLISEFNLEGF-IV 84 (180)
Q Consensus 24 ~~~~iLalD~G~kriGvAvsd~~-~~~a~Pl~~i~~----~~-----~--~~------~~~~~~L~~li~e~~i~~i-VV 84 (180)
...++-+||.|+-.|=+-|.+.. .....++..... .. . +. -..+....+++++++++.+ +|
T Consensus 14 ~~~~~A~IDiGSNsiRL~I~~~~~~~~~~~i~~~k~~vrLg~g~~~~g~ls~eai~r~~~aL~~f~~~~~~~~v~~v~~v 93 (343)
T 3cer_A 14 ESVTVAGIDCGTNSIRLKIARVDADGMHEVVPRILRVIRLGQDVDKTHRFADEALERAYVAAREFAGVIAEHPIDGLRFV 93 (343)
T ss_dssp CCEEEEEEEECSSCEEEEEEEEETTEEEEEEEEEEECCCTTTTHHHHSSCCHHHHHHHHHHHHHHHHHHTTSCCSEEEEE
T ss_pred CCCeEEEEEcccceeEeEEEEEcCCCCEEEEEEEEEEeeCCCCccccCCcCHHHHHHHHHHHHHHHHHHHHCCCCeEEEE
Confidence 45678899999999999998853 121222221110 00 0 00 1235667778888999854 45
Q ss_pred ecccCCCCCc-hHHHHHHHHHHHHHhccCCCCCcEEEec
Q 030251 85 GYPFNRQQNA-ADAVQVKLFIDDLSATKKLEDMKYAYWN 122 (180)
Q Consensus 85 GlP~~dG~~s-~~~~~v~~F~~~L~~~~~~~~lpV~~~D 122 (180)
+ |.. ..+.....|.+++++. . +++|..++
T Consensus 94 A------TsA~R~A~N~~~fl~~v~~~--t-Gi~ieVIs 123 (343)
T 3cer_A 94 A------TSATRDAENREEFEDEIERI--L-GVRPEVIP 123 (343)
T ss_dssp E------CHHHHHCTTHHHHHHHHHHH--H-SSCCEECC
T ss_pred e------cHHHHcCcCHHHHHHHHHHH--H-CCCEEEeC
Confidence 5 322 1233446899999985 2 78887776
No 233
>1ii7_A MRE11 nuclease; RAD50, DNA double-strand break repair, DAMP, manganese, replication; HET: DA; 2.20A {Pyrococcus furiosus} SCOP: d.159.1.4 PDB: 3dsc_A* 3dsd_A* 1s8e_A
Probab=20.54 E-value=3.4e+02 Score=21.84 Aligned_cols=51 Identities=2% Similarity=-0.059 Sum_probs=30.6
Q ss_pred HHHHHHHHHhhCCCEEEEecccC-CCCCch-HHHHHHHHHHHHHhccCCCCCcEEEe
Q 030251 67 AEDFRSLISEFNLEGFIVGYPFN-RQQNAA-DAVQVKLFIDDLSATKKLEDMKYAYW 121 (180)
Q Consensus 67 ~~~L~~li~e~~i~~iVVGlP~~-dG~~s~-~~~~v~~F~~~L~~~~~~~~lpV~~~ 121 (180)
++++.+.+.+.+++.||++-=+- .+..+. ....+.++..+|.+ . ++||+++
T Consensus 29 ~~~~~~~~~~~~~D~vl~~GDl~d~~~~~~~~~~~~~~~l~~l~~---~-~~~v~~v 81 (333)
T 1ii7_A 29 FKNALEIAVQENVDFILIAGDLFHSSRPSPGTLKKAIALLQIPKE---H-SIPVFAI 81 (333)
T ss_dssp HHHHHHHHHHTTCSEEEEESCSBSSSSCCHHHHHHHHHHHHHHHT---T-TCCEEEE
T ss_pred HHHHHHHHHhcCCCEEEECCCcCCCCCCCHHHHHHHHHHHHHHHH---C-CCcEEEe
Confidence 56777777889999999874433 233332 22333445555553 1 5788877
No 234
>1qv9_A F420-dependent methylenetetrahydromethanopterin dehydrogenase; monomer: alpha/beta domain, helix bundle, trimer of dimers, oxidoreductase; HET: MSE; 1.54A {Methanopyrus kandleri} SCOP: c.127.1.1 PDB: 1u6i_A 1u6j_A 1u6k_A* 3iqe_A* 3iqf_A* 3iqz_A*
Probab=20.41 E-value=2.3e+02 Score=23.49 Aligned_cols=74 Identities=14% Similarity=0.139 Sum_probs=48.5
Q ss_pred HHHHHHHH----HhhCCCEEEEecccCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEecccccHHHHHHHhccCCCC--
Q 030251 67 AEDFRSLI----SEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLH-- 140 (180)
Q Consensus 67 ~~~L~~li----~e~~i~~iVVGlP~~dG~~s~~~~~v~~F~~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l~~~g~~-- 140 (180)
.+...... .+|+++-+|+.-|-- +..++. .+| +.|+.. ++|.+.+-..-|++ ++..|.+.|+.
T Consensus 49 ~~~~~~~~~~~~~~~~pDfvI~isPN~-a~PGP~--~AR---E~l~~~----~iP~IvI~D~p~~K-~kd~l~~~g~GYI 117 (283)
T 1qv9_A 49 VEAAVEMALDIAEDFEPDFIVYGGPNP-AAPGPS--KAR---EMLADS----EYPAVIIGDAPGLK-VKDEMEEQGLGYI 117 (283)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEECSCT-TSHHHH--HHH---HHHHTS----SSCEEEEEEGGGGG-GHHHHHHTTCEEE
T ss_pred HHHHHHHhhhhhhhcCCCEEEEECCCC-CCCCch--HHH---HHHHhC----CCCEEEEcCCcchh-hHHHHHhcCCcEE
Confidence 34444444 899999999996643 444443 222 235542 89988888787777 78888887763
Q ss_pred -------CCCCCCCCcHH
Q 030251 141 -------PVEYKTILDKF 151 (180)
Q Consensus 141 -------~~~~k~~iD~~ 151 (180)
-.-|++-+|..
T Consensus 118 ivk~DpMIGArREFLDP~ 135 (283)
T 1qv9_A 118 LVKPDAMLGARREFLDPV 135 (283)
T ss_dssp EETTSCCCCCCTTTCCHH
T ss_pred EEecCccccchhhccCHH
Confidence 13356667754
No 235
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=20.37 E-value=1.9e+02 Score=18.98 Aligned_cols=85 Identities=8% Similarity=0.036 Sum_probs=47.2
Q ss_pred HHHHHHhhC-CCEEEEecccCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEecccccHHHHHHHhccCCCCCCCCCCCC
Q 030251 70 FRSLISEFN-LEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLNPLDLHPVEYKTIL 148 (180)
Q Consensus 70 L~~li~e~~-i~~iVVGlP~~dG~~s~~~~~v~~F~~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l~~~g~~~~~~k~~i 148 (180)
....+.+.. ++.|++.+-+. +..+ ..|.+.|++.. .+.+||+++-..-+...+.+.+. .|...--. +++
T Consensus 43 a~~~~~~~~~~dlvi~D~~l~-~~~g------~~~~~~l~~~~-~~~~~ii~~s~~~~~~~~~~~~~-~g~~~~l~-KP~ 112 (136)
T 3hdv_A 43 ARLYLHYQKRIGLMITDLRMQ-PESG------LDLIRTIRASE-RAALSIIVVSGDTDVEEAVDVMH-LGVVDFLL-KPV 112 (136)
T ss_dssp HHHHHHHCTTEEEEEECSCCS-SSCH------HHHHHHHHTST-TTTCEEEEEESSCCHHHHHHHHH-TTCSEEEE-SSC
T ss_pred HHHHHHhCCCCcEEEEeccCC-CCCH------HHHHHHHHhcC-CCCCCEEEEeCCCChHHHHHHHh-CCcceEEe-CCC
Confidence 334444455 99999997655 2222 35777887631 45789998877777666655553 34332111 244
Q ss_pred cHHHHHHHHHHHHhhh
Q 030251 149 DKFAAVGILQEYLDNA 164 (180)
Q Consensus 149 D~~AA~iILq~yL~~~ 164 (180)
+.-.=.-.+++++...
T Consensus 113 ~~~~l~~~i~~~~~~~ 128 (136)
T 3hdv_A 113 DLGKLLELVNKELKIG 128 (136)
T ss_dssp CHHHHHHHHHHHHC--
T ss_pred CHHHHHHHHHHHhcCc
Confidence 4444444455555443
No 236
>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*
Probab=20.27 E-value=1.8e+02 Score=24.99 Aligned_cols=54 Identities=9% Similarity=0.177 Sum_probs=35.3
Q ss_pred HHHHHHHHHh-hCCCEEEEec----ccC-CCCCchHHHHHHHHHHHHHhccCCCCCcEEEecccccH
Q 030251 67 AEDFRSLISE-FNLEGFIVGY----PFN-RQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTS 127 (180)
Q Consensus 67 ~~~L~~li~e-~~i~~iVVGl----P~~-dG~~s~~~~~v~~F~~~L~~~~~~~~lpV~~~DEr~TT 127 (180)
++.|.+.+++ .++..|++.- |-| .|+..+ ++++++..++. .+++ ++++||-+.+
T Consensus 164 ~e~l~~~l~~~~~tklV~i~~s~~~p~nptg~i~d----l~~i~~la~~~--~~g~-~livD~a~~~ 223 (427)
T 3i16_A 164 LEEIEKVLKEDESITLVHIQRSTGYGWRRALLIED----IKSIVDCVKNI--RKDI-ICFVDNCYGE 223 (427)
T ss_dssp HHHHHHHHHTCTTEEEEEEECSCCSSSSCCCCHHH----HHHHHHHHHHH--CTTS-EEEEECTTTT
T ss_pred HHHHHHHhhCCCCCEEEEEEcCCCCCCCCcccHHH----HHHHHHHHHHh--CCCC-EEEEECCCcc
Confidence 5888888875 5788999988 888 887654 34444444430 0144 4558887654
No 237
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=20.06 E-value=2e+02 Score=19.14 Aligned_cols=58 Identities=9% Similarity=0.012 Sum_probs=36.9
Q ss_pred HHHHHHHHhhCCCEEEEecccCCCCCchHHHHHHHHHHHHHhccCCCCCcEEEecccccHHHHHHHhc
Q 030251 68 EDFRSLISEFNLEGFIVGYPFNRQQNAADAVQVKLFIDDLSATKKLEDMKYAYWNEGFTSKGVELLLN 135 (180)
Q Consensus 68 ~~L~~li~e~~i~~iVVGlP~~dG~~s~~~~~v~~F~~~L~~~~~~~~lpV~~~DEr~TT~~A~~~l~ 135 (180)
.+..+.+.+..++.+++.+-+. +..+ ..+.+.|++. . .+||+++-..-+...+.+.+.
T Consensus 38 ~~al~~~~~~~~dlvllD~~l~-~~~g------~~l~~~l~~~--~-~~~ii~ls~~~~~~~~~~~~~ 95 (136)
T 2qzj_A 38 EEAIGKIFSNKYDLIFLEIILS-DGDG------WTLCKKIRNV--T-TCPIVYMTYINEDQSILNALN 95 (136)
T ss_dssp HHHHHHHHHCCCSEEEEESEET-TEEH------HHHHHHHHTT--C-CCCEEEEESCCCHHHHHHHHH
T ss_pred HHHHHHHHhcCCCEEEEeCCCC-CCCH------HHHHHHHccC--C-CCCEEEEEcCCCHHHHHHHHH
Confidence 3444566678899999987554 2122 2467777763 2 689988876666655555554
Done!