BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 030252
         (180 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P24805|TSJT1_TOBAC Stem-specific protein TSJT1 OS=Nicotiana tabacum GN=TSJT1 PE=2 SV=1
          Length = 149

 Score =  114 bits (285), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 58/141 (41%), Positives = 83/141 (58%), Gaps = 7/141 (4%)

Query: 1   MLGVFSSAIVSPPEELV--AAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYT 58
           ML VF  +I  PP EL    AG +    KT    + + F      +    + +   +A++
Sbjct: 1   MLAVFEQSIGRPPPELSLPQAGIQKKEAKTREE-IAESFKTWKQDSTFYHLFNGNFMAFS 59

Query: 59  HQNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAP 118
           H NE+PL+ RS  V D++FC+F GALDN   LR+ YGL++ A E ++++EAYK LRDRAP
Sbjct: 60  HGNENPLQPRSIVVMDDVFCIFSGALDNTFDLRKHYGLSRQATEAMIMVEAYKVLRDRAP 119

Query: 119 YPPNHVVGHLSGTNLVRFLFI 139
           YPP+ V+  L G    +F FI
Sbjct: 120 YPPDQVIKELEG----KFAFI 136


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.319    0.132    0.365 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,909,674
Number of Sequences: 539616
Number of extensions: 2119674
Number of successful extensions: 5715
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5712
Number of HSP's gapped (non-prelim): 3
length of query: 180
length of database: 191,569,459
effective HSP length: 110
effective length of query: 70
effective length of database: 132,211,699
effective search space: 9254818930
effective search space used: 9254818930
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)