Query 030252
Match_columns 180
No_of_seqs 92 out of 94
Neff 3.0
Searched_HMMs 46136
Date Fri Mar 29 10:54:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030252.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030252hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF12481 DUF3700: Aluminium in 100.0 2E-79 4.3E-84 520.2 12.6 160 2-162 1-186 (228)
2 cd01910 Wali7 This domain is p 100.0 7.8E-49 1.7E-53 331.5 10.4 164 2-168 1-191 (224)
3 cd00712 AsnB Glutamine amidotr 97.8 8.8E-05 1.9E-09 60.2 7.0 102 33-145 22-136 (220)
4 PF13537 GATase_7: Glutamine a 97.5 0.00011 2.3E-09 55.3 3.7 65 72-140 20-88 (125)
5 TIGR01536 asn_synth_AEB aspara 96.5 0.0047 1E-07 55.6 5.4 62 75-143 67-134 (467)
6 TIGR03108 eps_aminotran_1 exos 96.2 0.015 3.3E-07 54.4 7.3 72 74-152 68-149 (628)
7 cd00352 Gn_AT_II Glutamine ami 96.2 0.012 2.5E-07 46.0 5.3 78 65-144 88-174 (220)
8 PTZ00077 asparagine synthetase 96.1 0.0062 1.3E-07 57.9 4.3 60 74-139 73-136 (586)
9 cd01909 betaLS_CarA_N Glutamin 95.9 0.0082 1.8E-07 50.3 3.6 64 74-144 50-118 (199)
10 PLN02549 asparagine synthase ( 95.8 0.013 2.7E-07 55.8 4.9 59 74-139 68-128 (578)
11 PRK09431 asnB asparagine synth 95.8 0.03 6.5E-07 52.8 7.1 105 33-145 24-137 (554)
12 cd00714 GFAT Glutamine amidotr 95.5 0.035 7.6E-07 45.6 5.7 66 74-139 92-164 (215)
13 cd03766 Gn_AT_II_novel Gn_AT_I 94.4 0.032 6.9E-07 45.2 2.5 59 74-139 72-130 (181)
14 PF13522 GATase_6: Glutamine a 94.3 0.045 9.7E-07 41.9 3.1 59 74-139 40-102 (133)
15 TIGR03104 trio_amidotrans aspa 93.9 0.15 3.4E-06 48.1 6.4 58 75-139 69-130 (589)
16 TIGR01135 glmS glucosamine--fr 92.5 0.21 4.5E-06 46.7 4.9 65 74-139 92-164 (607)
17 PRK00331 glucosamine--fructose 91.2 0.62 1.4E-05 43.6 6.5 66 74-139 93-165 (604)
18 cd01907 GlxB Glutamine amidotr 90.0 0.72 1.6E-05 39.1 5.3 67 75-141 104-196 (249)
19 PTZ00295 glucosamine-fructose- 86.7 0.93 2E-05 43.1 4.4 64 74-139 123-195 (640)
20 PLN02981 glucosamine:fructose- 86.5 1.7 3.6E-05 42.2 6.0 67 73-139 114-193 (680)
21 PRK07847 amidophosphoribosyltr 86.3 0.85 1.8E-05 43.4 3.9 68 73-140 118-196 (510)
22 PTZ00394 glucosamine-fructose- 86.1 0.86 1.9E-05 44.2 3.9 77 74-153 125-217 (670)
23 cd00715 GPATase_N Glutamine am 86.1 0.81 1.8E-05 38.3 3.3 71 74-144 94-170 (252)
24 PRK08525 amidophosphoribosyltr 83.6 0.96 2.1E-05 41.9 2.9 71 74-145 95-171 (445)
25 PRK07349 amidophosphoribosyltr 82.9 1.5 3.3E-05 41.6 4.0 79 74-152 128-217 (500)
26 COG0449 GlmS Glucosamine 6-pho 81.1 0.25 5.4E-06 48.2 -1.9 102 74-179 92-206 (597)
27 PRK08341 amidophosphoribosyltr 80.2 0.95 2E-05 42.2 1.6 68 74-144 94-171 (442)
28 PRK06388 amidophosphoribosyltr 78.4 2.3 4.9E-05 40.1 3.5 77 74-152 112-200 (474)
29 PRK09123 amidophosphoribosyltr 76.4 1.8 3.8E-05 40.8 2.1 67 74-143 116-190 (479)
30 COG0367 AsnB Asparagine syntha 76.1 3.4 7.4E-05 39.2 4.0 61 74-141 67-131 (542)
31 PRK07631 amidophosphoribosyltr 75.9 2.9 6.3E-05 39.5 3.4 66 74-142 105-178 (475)
32 PRK09246 amidophosphoribosyltr 75.2 4.4 9.5E-05 38.1 4.4 70 75-144 95-179 (501)
33 PLN02440 amidophosphoribosyltr 73.1 2 4.4E-05 40.2 1.7 69 75-143 96-169 (479)
34 PRK06781 amidophosphoribosyltr 70.6 5.5 0.00012 37.5 3.9 68 74-143 105-179 (471)
35 TIGR01134 purF amidophosphorib 65.4 13 0.00028 34.5 5.2 70 74-143 94-170 (442)
36 PRK07272 amidophosphoribosyltr 60.4 7.6 0.00016 36.8 2.8 71 74-147 106-184 (484)
37 PRK03946 pdxA 4-hydroxythreoni 59.3 7.5 0.00016 35.2 2.4 36 100-136 197-240 (307)
38 PRK05793 amidophosphoribosyltr 54.3 13 0.00028 34.8 3.2 65 74-142 110-183 (469)
39 PF14871 GHL6: Hypothetical gl 52.4 31 0.00067 27.2 4.6 40 30-69 2-41 (132)
40 cd01949 GGDEF Diguanylate-cycl 52.2 24 0.00053 24.4 3.6 58 76-137 31-88 (158)
41 PRK14053 methyltransferase; Pr 51.2 6.3 0.00014 34.1 0.6 60 87-148 116-182 (194)
42 TIGR00254 GGDEF diguanylate cy 49.3 53 0.0011 23.3 5.1 59 77-139 34-92 (165)
43 cd06257 DnaJ DnaJ domain or J- 44.4 16 0.00034 23.0 1.5 27 89-115 23-55 (55)
44 PRK00366 ispG 4-hydroxy-3-meth 39.5 16 0.00035 34.1 1.4 48 79-127 158-210 (360)
45 PF00392 GntR: Bacterial regul 37.8 30 0.00065 23.1 2.2 29 84-117 24-52 (64)
46 smart00267 GGDEF diguanylate c 37.0 57 0.0012 22.6 3.6 59 77-139 35-93 (163)
47 smart00271 DnaJ DnaJ molecular 36.5 22 0.00049 22.7 1.3 26 90-115 25-57 (60)
48 PF00790 VHS: VHS domain; Int 35.9 23 0.0005 27.3 1.6 30 85-117 111-140 (140)
49 PRK02746 pdxA 4-hydroxythreoni 34.5 25 0.00054 32.5 1.8 37 100-136 225-277 (345)
50 TIGR00612 ispG_gcpE 1-hydroxy- 32.6 24 0.00053 32.9 1.4 24 100-123 174-197 (346)
51 PRK15481 transcriptional regul 32.2 38 0.00082 29.9 2.5 28 85-117 30-57 (431)
52 COG3394 Uncharacterized protei 32.0 22 0.00047 32.0 0.9 19 92-112 10-28 (257)
53 PF14026 DUF4242: Protein of u 30.8 48 0.001 23.9 2.4 36 68-125 38-75 (77)
54 PRK03371 pdxA 4-hydroxythreoni 30.8 34 0.00073 31.3 2.0 37 100-136 221-263 (326)
55 PRK01909 pdxA 4-hydroxythreoni 30.1 35 0.00076 31.2 2.0 37 100-136 218-260 (329)
56 TIGR00557 pdxA 4-hydroxythreon 28.7 39 0.00084 30.7 2.0 36 101-136 216-257 (320)
57 TIGR00938 thrB_alt homoserine 28.3 1.2E+02 0.0026 25.5 4.7 67 98-167 57-132 (307)
58 PF12029 DUF3516: Domain of un 27.7 45 0.00098 32.3 2.3 48 64-119 238-288 (461)
59 PF00990 GGDEF: GGDEF domain; 27.4 74 0.0016 22.4 2.9 65 74-142 30-94 (161)
60 smart00345 HTH_GNTR helix_turn 27.0 73 0.0016 19.7 2.5 29 84-117 20-48 (60)
61 cd07377 WHTH_GntR Winged helix 26.9 73 0.0016 20.1 2.6 28 85-117 26-53 (66)
62 PF12550 GCR1_C: Transcription 26.7 48 0.001 23.8 1.8 43 86-129 27-78 (81)
63 PRK05312 pdxA 4-hydroxythreoni 23.9 49 0.0011 30.4 1.7 37 100-136 227-269 (336)
64 PF09931 DUF2163: Uncharacteri 22.7 3.9E+02 0.0084 21.1 6.7 87 47-141 25-117 (163)
65 PF08726 EFhand_Ca_insen: Ca2+ 22.4 51 0.0011 23.9 1.3 14 106-119 8-21 (69)
66 PRK03743 pdxA 4-hydroxythreoni 21.6 60 0.0013 29.7 1.8 37 100-136 222-264 (332)
67 COG1995 PdxA Pyridoxal phospha 21.5 79 0.0017 29.4 2.6 40 88-127 191-253 (332)
68 PRK01773 hscB co-chaperone Hsc 21.1 63 0.0014 26.7 1.7 13 103-115 52-64 (173)
69 PF05301 Mec-17: Touch recepto 21.0 60 0.0013 26.2 1.5 18 87-104 92-109 (120)
70 PRK01356 hscB co-chaperone Hsc 20.8 59 0.0013 26.6 1.5 16 104-119 51-69 (166)
71 PRK05601 DNA polymerase III su 20.7 68 0.0015 30.2 2.0 35 85-119 200-251 (377)
72 PRK00232 pdxA 4-hydroxythreoni 20.1 68 0.0015 29.4 1.8 36 101-136 223-264 (332)
No 1
>PF12481 DUF3700: Aluminium induced protein ; InterPro: IPR024286 This entry represents a domain found in plant proteins that is approximately 120 amino acids in length. There are two conserved sequence motifs: YGL and LRDR.
Probab=100.00 E-value=2e-79 Score=520.18 Aligned_cols=160 Identities=45% Similarity=0.744 Sum_probs=154.2
Q ss_pred cccccccccCCccccccCCCCCCC--CCCChHHHHHHHhcCCCCcEEEEeCCceEEEEecCCCCCccccccccccceeEe
Q 030252 2 LGVFSSAIVSPPEELVAAGSRTPS--PKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQNESPLRQRSFAVKDEIFCL 79 (180)
Q Consensus 2 LaVF~ksVa~~PeEL~Sp~s~~~s--~~k~~~ell~~F~s~~p~avsv~~G~~~~LAYs~~~~~~l~pR~F~~~DDIfCl 79 (180)
||||+|+||++||||+||++..++ ++|+++||+++|+++||+||||+||++++|||||++|++++||+||++||||||
T Consensus 1 LavF~k~va~~PeeL~sp~s~~~s~~~~k~~~ell~~F~s~~p~a~s~~~g~~~~lAys~~~~~~l~pR~F~~~DdIfCi 80 (228)
T PF12481_consen 1 LAVFHKSVAKPPEELNSPASSLPSSKKPKGPEELLKDFVSANPNAFSMNFGDSAALAYSHSNQSSLHPRLFAGVDDIFCI 80 (228)
T ss_pred CcccccccCCCchHhcCcccCCCcccCCCCHHHHHHHHHHhCCCeEEEEcCCCEEEEEecCCCCccccccccccCCEEEE
Confidence 899999999999999999976443 699999999999999999999999999999999999999999999999999999
Q ss_pred ecccccChHHHHHhhCCcccccceeehHHHHHHhHhcCCCCcccccccccCceEEEEEec--------------------
Q 030252 80 FEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGTNLVRFLFI-------------------- 139 (180)
Q Consensus 80 F~G~LeNL~~L~qQYGLsK~aNEv~lVIEAYRTLRDRgPYPAdQVVkdL~G~Faf~~~~~-------------------- 139 (180)
|+|+||||+.|||||||||+|||||||||||||||||||||||||||||+|+|||++||.
T Consensus 81 F~G~L~Nl~~L~qqYGLsK~~nEa~~vIEAYrtLRDRgPyPadqvv~~L~G~FaFVlyD~~~~tvf~A~d~~G~vpLyWG 160 (228)
T PF12481_consen 81 FLGSLENLCSLRQQYGLSKGANEAMFVIEAYRTLRDRGPYPADQVVKDLEGSFAFVLYDSKTGTVFVARDSDGSVPLYWG 160 (228)
T ss_pred EecchhhHHHHHHHhCcCcCcchhhhHHHHHHHhhccCCCChHHHHHhccCceEEEEEecCCCcEEEeecCCCCcceEEE
Confidence 999999999999999999999999999999999999999999999999999999999973
Q ss_pred ----chhhhhcchhHHHHHHhHHHHHh
Q 030252 140 ----GESLLMDMLPLLMMLTCSKVLAA 162 (180)
Q Consensus 140 ----g~~~~~d~l~~~~~~~c~k~~a~ 162 (180)
|++||+||+.+ |.++|+|+||.
T Consensus 161 i~~DGslv~Sdd~~~-ik~~C~kS~Ap 186 (228)
T PF12481_consen 161 IAADGSLVFSDDLEL-IKEGCGKSFAP 186 (228)
T ss_pred EeCCCCEEEcCCHHH-HHhhhhhccCC
Confidence 78999999999 99999999985
No 2
>cd01910 Wali7 This domain is present in Wali7, a protein of unknown function, expressed in wheat and induced by aluminum. Wali7 has a single domain similar to the glutamine amidotransferase domain of glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The Wali7 domain is also somewhat similar to the Ntn hydrolase fold of the proteasomal alph and beta subunits.
Probab=100.00 E-value=7.8e-49 Score=331.47 Aligned_cols=164 Identities=54% Similarity=0.862 Sum_probs=149.0
Q ss_pred cccccccccCCccccccCCCCCCCCCCChHHHHHHHhcCCCCcEEEEeCCceEEEEecCCCCCccccccccccceeEeec
Q 030252 2 LGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQNESPLRQRSFAVKDEIFCLFE 81 (180)
Q Consensus 2 LaVF~ksVa~~PeEL~Sp~s~~~s~~k~~~ell~~F~s~~p~avsv~~G~~~~LAYs~~~~~~l~pR~F~~~DDIfClF~ 81 (180)
||||+|+||++||||+||++.++ +++++||+++|+++||++|+++||+++.|||+|++|++++||+|++.|+|+|+|.
T Consensus 1 laif~~~~~~~p~el~~~~~~~~--~~~~~~~~~~f~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~rl~~~~~~~~~vfn 78 (224)
T cd01910 1 LAVFSKAVAKPPEELVSAGSRTP--AKTAEELLKRFLSANPSAVFVHLGAAGFLAYSHHNQSPLHPRLFAVKDDIFCLFQ 78 (224)
T ss_pred CcccccccCCCChHHcCCCcccc--CCCHHHHHHHHHhcCCCcEEEEcCCceEEEEecCCCCcccCcEECCCCCEEEEEE
Confidence 89999999999999999987533 6788899999999999999999999999999999999999999999999999999
Q ss_pred ccccChHHHHHhhCCcccccceeehHHHHHHhHhcCCCCcccccccccCceEEEEEec----------------------
Q 030252 82 GALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGTNLVRFLFI---------------------- 139 (180)
Q Consensus 82 G~LeNL~~L~qQYGLsK~aNEv~lVIEAYRTLRDRgPYPAdQVVkdL~G~Faf~~~~~---------------------- 139 (180)
|.|.|...||+|||+.|+++|+++|||+||++||||||||++++++|+|.|||++||.
T Consensus 79 GeIyN~~eLr~~lg~~~t~sD~evIl~lY~~~~d~G~y~~~~~l~~L~G~FAFvi~D~~~~~l~lARD~~Gi~PLYyg~~ 158 (224)
T cd01910 79 GHLDNLGSLKQQYGLSKTANEAMLVIEAYRTLRDRGPYPADQVVKDLEGSFAFVLYDKKTSTVFVASDADGSVPLYWGIA 158 (224)
T ss_pred eEEcCHHHHHHHhCCCCCCcHHHHHHHHHHHHHhcCCccHHHHHHhcCeEEEEEEEECCCCEEEEEEcCCCCcceEEEEe
Confidence 9999999999999999999999999999999999999999999999999999999863
Q ss_pred --chhhhhcchhHHHHHHhHHHHH---hhhhhhh
Q 030252 140 --GESLLMDMLPLLMMLTCSKVLA---ASHLLLS 168 (180)
Q Consensus 140 --g~~~~~d~l~~~~~~~c~k~~a---~~~~~~~ 168 (180)
|..++++++.. +...|.|+++ ..|...|
T Consensus 159 ~dG~l~FASElka-L~~~c~~~~~~FPpG~~~~s 191 (224)
T cd01910 159 ADGSVVFSDDVEL-VKASCGKSFAPFPKGCFFHS 191 (224)
T ss_pred CCCEEEEEeCHHH-hhhhhccEEEEECCCCEEeC
Confidence 45677888888 5677976543 4565443
No 3
>cd00712 AsnB Glutamine amidotransferases class-II (GATase) asparagine synthase_B type. Asparagine synthetase B catalyses the ATP-dependent conversion of aspartate to asparagine. This enzyme is a homodimer, with each monomer composed of a glutaminase domain and a synthetase domain. The N-terminal glutaminase domain hydrolyzes glutamine to glutamic acid and ammonia.
Probab=97.77 E-value=8.8e-05 Score=60.16 Aligned_cols=102 Identities=13% Similarity=0.289 Sum_probs=70.3
Q ss_pred HHHHHhcCCCCcEEEEeCCceEEEEecC-------CCCCccccccccccceeEeecccccChHHHHHhhCCc----cccc
Q 030252 33 LVDRFLQTNSSAVSVQVGDNVTLAYTHQ-------NESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLA----KSAN 101 (180)
Q Consensus 33 ll~~F~s~~p~avsv~~G~~~~LAYs~~-------~~~~l~pR~F~~~DDIfClF~G~LeNL~~L~qQYGLs----K~aN 101 (180)
++..-.-.=|++..+...+...|+.+.- +..|+.-+ -.++.++|-|.|.|-..|++.++.. ++.+
T Consensus 22 ~~~~l~hRGpd~~~~~~~~~~~lgh~rl~~~~~~~~~qP~~~~----~~~~~~~~nG~i~N~~~L~~~l~~~~~~~~~~s 97 (220)
T cd00712 22 MLDALAHRGPDGSGIWIDEGVALGHRRLSIIDLSGGAQPMVSE----DGRLVLVFNGEIYNYRELRAELEALGHRFRTHS 97 (220)
T ss_pred HHHHHhccCCCCCCEEEECCEEEEEEeeeecCcccCCCCeEeC----CCCEEEEEEEEEeCHHHHHHHHHhcCCcCCCCC
Confidence 4444444446665555544444544431 11132222 1478999999999999999998763 6888
Q ss_pred ceeehHHHHHHhHhcCCCCcccccccccCceEEEEEec--chhhhh
Q 030252 102 EVILVIEAYKALRDRAPYPPNHVVGHLSGTNLVRFLFI--GESLLM 145 (180)
Q Consensus 102 Ev~lVIEAYRTLRDRgPYPAdQVVkdL~G~Faf~~~~~--g~~~~~ 145 (180)
++-+++++|+.- | .+++++++|.|+|++++. ++.++.
T Consensus 98 D~e~l~~~~~~~---g----~~~~~~l~G~fa~vi~d~~~~~l~~~ 136 (220)
T cd00712 98 DTEVILHLYEEW---G----EDCLERLNGMFAFALWDKRKRRLFLA 136 (220)
T ss_pred hHHHHHHHHHHH---h----HHHHHHhhheEEEEEEECCCCEEEEE
Confidence 999999999864 4 689999999999999987 555443
No 4
>PF13537 GATase_7: Glutamine amidotransferase domain; PDB: 1JGT_A 1M1Z_B 1MB9_B 1MBZ_B 1MC1_A.
Probab=97.50 E-value=0.00011 Score=55.30 Aligned_cols=65 Identities=18% Similarity=0.291 Sum_probs=44.7
Q ss_pred cccceeEeecccccChHHHHHhhCCc----ccccceeehHHHHHHhHhcCCCCcccccccccCceEEEEEecc
Q 030252 72 VKDEIFCLFEGALDNLGSLRQQYGLA----KSANEVILVIEAYKALRDRAPYPPNHVVGHLSGTNLVRFLFIG 140 (180)
Q Consensus 72 ~~DDIfClF~G~LeNL~~L~qQYGLs----K~aNEv~lVIEAYRTLRDRgPYPAdQVVkdL~G~Faf~~~~~g 140 (180)
.-+++.+.|.|.|.|...|++++... ++.+++-++.++|+..++-| .+++++++|.|||++++..
T Consensus 20 ~~~~~~l~~nG~i~N~~eL~~~l~~~g~~~~~~~D~e~i~~~~~~~~~~~----~~~~~~l~G~fa~v~~d~~ 88 (125)
T PF13537_consen 20 EDGELVLVFNGEIYNREELRRELEERGHQFSSDSDSELILHLYEEYREWG----EDFLKRLDGPFAFVIWDKD 88 (125)
T ss_dssp -----EEEEEEEES-HHHHHHTSSSS---S--SSHHHHHHHHHHH---HG----GGGGGT--EEEEEEEEETT
T ss_pred cccCEEEEEEEEEEChHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHH----HHHHHhCCceEEEEEEeCC
Confidence 45789999999999999999999652 56677777889998744444 3689999999999999983
No 5
>TIGR01536 asn_synth_AEB asparagine synthase (glutamine-hydrolyzing). This model describes the glutamine-hydrolysing asparagine synthase. A poorly conserved C-terminal extension was removed from the model. Bacterial members of the family tend to have a long, poorly conserved insert lacking from archaeal and eukaryotic sequences. Multiple isozymes have been demonstrated, such as in Bacillus subtilis. Long-branch members of the phylogenetic tree (which typically were also second or third candidate members from their genomes) were removed from the seed alignment and score below trusted cutoff.
Probab=96.50 E-value=0.0047 Score=55.58 Aligned_cols=62 Identities=18% Similarity=0.335 Sum_probs=50.5
Q ss_pred ceeEeecccccChHHHHHhhCC---c-ccccceeehHHHHHHhHhcCCCCcccccccccCceEEEEEec--chhh
Q 030252 75 EIFCLFEGALDNLGSLRQQYGL---A-KSANEVILVIEAYKALRDRAPYPPNHVVGHLSGTNLVRFLFI--GESL 143 (180)
Q Consensus 75 DIfClF~G~LeNL~~L~qQYGL---s-K~aNEv~lVIEAYRTLRDRgPYPAdQVVkdL~G~Faf~~~~~--g~~~ 143 (180)
.+.++|-|.|.|-..|+++++. . ++.+++-++.++|+.. | .+++++|+|.|||+++|- ++.+
T Consensus 67 ~~~lv~nGeiyN~~eL~~~l~~~g~~~~~~~D~e~il~~y~~~---g----~~~~~~l~G~fa~~i~D~~~~~l~ 134 (467)
T TIGR01536 67 TYVIVFNGEIYNHEELREELEAKGYTFQTDSDTEVILHLYEEW---G----EECVDRLDGMFAFALWDSKKGELF 134 (467)
T ss_pred CEEEEEeeEEcCHHHHHHHHHhcCCccCCCCHHHHHHHHHHHH---H----HHHHHHcCCcEEEEEEECCCCEEE
Confidence 6788999999999999998752 2 4566677788999865 3 679999999999999987 5543
No 6
>TIGR03108 eps_aminotran_1 exosortase 1 system-associated amidotransferase 1. The predicted protein-sorting transpeptidase that we call exosortase (see TIGR02602) has distinct subclasses that associated with different types of exopolysaccharide production loci. This model represents a distinct clade among a set of amidotransferases largely annotated (not necessarily accurately) as glutatime-hydrolyzing asparagine synthases. Members of this clade are essentially restricted to the characteristic exopolysaccharide (EPS) regions that contain the exosortase 1 genome (xrtA), in genomes that also have numbers of PEP-CTERM domain (TIGR02595) proteins.
Probab=96.23 E-value=0.015 Score=54.39 Aligned_cols=72 Identities=17% Similarity=0.290 Sum_probs=54.3
Q ss_pred cceeEeecccccChHHHHHhh---CCc-ccccceeehHHHHHHhHhcCCCCcccccccccCceEEEEEec--ch-hhhhc
Q 030252 74 DEIFCLFEGALDNLGSLRQQY---GLA-KSANEVILVIEAYKALRDRAPYPPNHVVGHLSGTNLVRFLFI--GE-SLLMD 146 (180)
Q Consensus 74 DDIfClF~G~LeNL~~L~qQY---GLs-K~aNEv~lVIEAYRTLRDRgPYPAdQVVkdL~G~Faf~~~~~--g~-~~~~d 146 (180)
..+-++|-|.|.|-..|++++ |.. ++.++.-+++++|+.-. .+++++|+|.|||++++. +. .+.-|
T Consensus 68 ~~~~lv~nGei~N~~eL~~~l~~~g~~~~~~sD~Evi~~~~~~~g-------~~~~~~l~G~fa~~~~d~~~~~l~~~rD 140 (628)
T TIGR03108 68 GSVVVVFNGEIYNFQELVAELQALGHVFRTRSDTEVIVHAWEEWG-------EACVERFRGMFAFALWDRNQETLFLARD 140 (628)
T ss_pred CCEEEEECCeECCHHHHHHHHHhcCCccCCCChHHHHHHHHHHHH-------HHHHHHcCCCEEEEEEECCCCEEEEEEC
Confidence 368889999999999999985 442 45556667899998753 579999999999999997 34 34445
Q ss_pred c---hhHHH
Q 030252 147 M---LPLLM 152 (180)
Q Consensus 147 ~---l~~~~ 152 (180)
- .|+..
T Consensus 141 ~~G~~PLyy 149 (628)
T TIGR03108 141 RLGIKPLYY 149 (628)
T ss_pred CCCCcceEE
Confidence 5 46544
No 7
>cd00352 Gn_AT_II Glutamine amidotransferases class-II (GATase). The glutaminase domain catalyzes an amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. This domain is related to members of the Ntn (N-terminal nucleophile) hydrolase superfamily and is found at the N-terminus of enzymes such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). GLMS catalyzes the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine in amino sugar synthesis. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. Asparagine synthetase B synthesizes asparagine from aspartate and glutamine. Beta-LS catalyzes the format
Probab=96.15 E-value=0.012 Score=46.01 Aligned_cols=78 Identities=10% Similarity=0.072 Sum_probs=59.9
Q ss_pred ccccccccccceeEeecccccChHHHHHhhC----CcccccceeehHHHHHHhHhcCCCCc---ccccccccCceEEEEE
Q 030252 65 LRQRSFAVKDEIFCLFEGALDNLGSLRQQYG----LAKSANEVILVIEAYKALRDRAPYPP---NHVVGHLSGTNLVRFL 137 (180)
Q Consensus 65 l~pR~F~~~DDIfClF~G~LeNL~~L~qQYG----LsK~aNEv~lVIEAYRTLRDRgPYPA---dQVVkdL~G~Faf~~~ 137 (180)
-||-.... .++..++-|.|+|...|++.++ ..++.++.-++..+|+...+.+. +. .+.++.++|.|+|+++
T Consensus 88 ~hPf~~~~-~~~~~~hNG~i~n~~~l~~~l~~~~~~~~~~tDse~i~~~~~~~~~~~~-~~~~~~~~~~~~~G~~~~~~~ 165 (220)
T cd00352 88 AQPFRSED-GRIALVHNGEIYNYRELREELEARGYRFEGESDSEVILHLLERLGREGG-LFEAVEDALKRLDGPFAFALW 165 (220)
T ss_pred CCCcCcCC-CCEEEEECcEEEcHHHHHHHHHHCCCeecCCCHHHHHHHHHHHHhccCC-HHHHHHHHHHhCCccEEEEEE
Confidence 55644443 6999999999999999998876 46788888888888887765543 22 4578889999999999
Q ss_pred ec--chhhh
Q 030252 138 FI--GESLL 144 (180)
Q Consensus 138 ~~--g~~~~ 144 (180)
+. +..++
T Consensus 166 d~~~~~l~~ 174 (220)
T cd00352 166 DGKPDRLFA 174 (220)
T ss_pred ECCCCEEEE
Confidence 98 55443
No 8
>PTZ00077 asparagine synthetase-like protein; Provisional
Probab=96.13 E-value=0.0062 Score=57.86 Aligned_cols=60 Identities=17% Similarity=0.227 Sum_probs=50.7
Q ss_pred cceeEeecccccChHHHHHhhCC----cccccceeehHHHHHHhHhcCCCCcccccccccCceEEEEEec
Q 030252 74 DEIFCLFEGALDNLGSLRQQYGL----AKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGTNLVRFLFI 139 (180)
Q Consensus 74 DDIfClF~G~LeNL~~L~qQYGL----sK~aNEv~lVIEAYRTLRDRgPYPAdQVVkdL~G~Faf~~~~~ 139 (180)
..+.++|-|.|-|-..||++++. -++.++.-+++++|+. .|+ ++++++|+|.|||++||.
T Consensus 73 ~~~~lv~NGEIYN~~eLr~~L~~~g~~f~t~sD~Evil~ly~~---~G~---~~~l~~L~G~FAf~i~D~ 136 (586)
T PTZ00077 73 ETVALMQNGEIYNHWEIRPELEKEGYKFSSNSDCEIIGHLYKE---YGP---KDFWNHLDGMFATVIYDM 136 (586)
T ss_pred CCEEEEEEEEEcCHHHHHHHHHhcCCcCCCCCHHHHHHHHHHH---hCH---HHHHHhcCCCEEEEEEEC
Confidence 46899999999999999999742 2677888899999985 343 479999999999999985
No 9
>cd01909 betaLS_CarA_N Glutamine amidotransferases class-II (GATase) asparagine synthase_betaLS-type. Carbapenam synthetase (CarA) is an ATP/Mg2+-dependent enzyme that catalyzes the formation of the beta-lactam ring in (5R)-carbapenem-3-carboxylic acid biosynthesis. CarA is homologous to beta-lactam synthetase (beta-LS), which is involved in the biosynthesis of clavulanic acid, a clinically important beta-lactamase inhibitor. CarA and beta-LS each have two distinct domains, an N-terminal Ntn hydrolase domain and a C-terminal synthetase domain, a domain architecture similar to that of the class-B asparagine synthetases (AS-B's). The N-terminal domain of these enzymes hydrolyzes glutamine to glutamate and ammonia. CarA forms a homotetramer while betaLS forms a heterodimer. The N-terminal folds of CarA and beta-LS are similar to those of other class II glutamine amidotransferases including lucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (
Probab=95.92 E-value=0.0082 Score=50.27 Aligned_cols=64 Identities=19% Similarity=0.102 Sum_probs=53.2
Q ss_pred cceeEeecccccChHHHHHhhCC----cccccceeehHHHHHHhHhcCCCCcccccccccCceEEEEEec-chhhh
Q 030252 74 DEIFCLFEGALDNLGSLRQQYGL----AKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGTNLVRFLFI-GESLL 144 (180)
Q Consensus 74 DDIfClF~G~LeNL~~L~qQYGL----sK~aNEv~lVIEAYRTLRDRgPYPAdQVVkdL~G~Faf~~~~~-g~~~~ 144 (180)
+++-++|-|.|.|-..|+++.+. .++.+++-+++.+|+..- .+.+++|+|.|||+++|. ++.++
T Consensus 50 ~~~~iv~NGEIYN~~eLr~~L~~~g~~f~t~sDtEvll~~y~~~G-------~~~l~~L~G~FAfai~D~~~~L~l 118 (199)
T cd01909 50 ETGTAYLIGELYNRDELRSLLGAGEGRSAVLGDAELLLLLLTRLG-------LHAFRLAEGDFCFFIEDGNGRLTL 118 (199)
T ss_pred CCEEEEEEEEEeCHHHHHHHHHhcCCCcCCCCHHHHHHHHHHHHh-------HHHHHHcCEEEEEEEEcCCCEEEE
Confidence 67999999999999999998633 377888889999998553 358999999999999998 55444
No 10
>PLN02549 asparagine synthase (glutamine-hydrolyzing)
Probab=95.83 E-value=0.013 Score=55.81 Aligned_cols=59 Identities=17% Similarity=0.229 Sum_probs=50.6
Q ss_pred cceeEeecccccChHHHHHhhC--CcccccceeehHHHHHHhHhcCCCCcccccccccCceEEEEEec
Q 030252 74 DEIFCLFEGALDNLGSLRQQYG--LAKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGTNLVRFLFI 139 (180)
Q Consensus 74 DDIfClF~G~LeNL~~L~qQYG--LsK~aNEv~lVIEAYRTLRDRgPYPAdQVVkdL~G~Faf~~~~~ 139 (180)
..+.++|-|.|-|-..||++++ --++.++.-+++++|+.- | .+++++|+|.|||++||.
T Consensus 68 ~~~~lv~NGEIyN~~eLr~~L~~~~f~t~sD~Evil~ly~~~---G----~~~~~~L~G~FAf~i~D~ 128 (578)
T PLN02549 68 KTIVVTANGEIYNHKELREKLKLHKFRTGSDCEVIAHLYEEH---G----EEFVDMLDGMFSFVLLDT 128 (578)
T ss_pred CCEEEEEEEEEEcHHHHHHHHHhCCCCCCCHHHHHHHHHHHH---H----HHHHHhCCCceEEEEEEC
Confidence 3588999999999999999985 347788888999999864 4 269999999999999985
No 11
>PRK09431 asnB asparagine synthetase B; Provisional
Probab=95.78 E-value=0.03 Score=52.82 Aligned_cols=105 Identities=12% Similarity=0.189 Sum_probs=66.7
Q ss_pred HHHHHhcCCCCcEEEEeCCceEEEEecCC----CCCccccccccccceeEeecccccChHHHHHhhCC---cccccceee
Q 030252 33 LVDRFLQTNSSAVSVQVGDNVTLAYTHQN----ESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGL---AKSANEVIL 105 (180)
Q Consensus 33 ll~~F~s~~p~avsv~~G~~~~LAYs~~~----~~~l~pR~F~~~DDIfClF~G~LeNL~~L~qQYGL---sK~aNEv~l 105 (180)
.++.-.-.=|+..-+...+.+.|+...-. ..--+| .+..-..+.++|-|.|-|-..|+++++- -++.++.=+
T Consensus 24 m~~~l~hRGPD~~g~~~~~~~~lgh~RLsIid~~~g~QP-~~~~~~~~~lv~NGEIyN~~eLr~~L~~~~~f~t~sD~Ev 102 (554)
T PRK09431 24 MSRLMRHRGPDWSGIYASDNAILGHERLSIVDVNGGAQP-LYNEDGTHVLAVNGEIYNHQELRAELGDKYAFQTGSDCEV 102 (554)
T ss_pred HHHHhhCCCCCcCCEEEeCCeEEEEEEeeecCCCCCCCC-CCcCCCCEEEEEEEEEecHHHHHHHHhccCCcCCCCHHHH
Confidence 44444444566555555444555543211 111112 1233346788999999999999998752 245556666
Q ss_pred hHHHHHHhHhcCCCCcccccccccCceEEEEEec--chhhhh
Q 030252 106 VIEAYKALRDRAPYPPNHVVGHLSGTNLVRFLFI--GESLLM 145 (180)
Q Consensus 106 VIEAYRTLRDRgPYPAdQVVkdL~G~Faf~~~~~--g~~~~~ 145 (180)
++++|+.. |+ +++++|+|.|||++||. ++.++.
T Consensus 103 il~ly~~~---G~----~~~~~L~G~FAf~i~D~~~~~l~la 137 (554)
T PRK09431 103 ILALYQEK---GP----DFLDDLDGMFAFALYDSEKDAYLIA 137 (554)
T ss_pred HHHHHHHH---HH----HHHHhCCCceEEEEEECCCCEEEEE
Confidence 88999863 42 69999999999999987 554443
No 12
>cd00714 GFAT Glutamine amidotransferases class-II (Gn-AT)_GFAT-type. This domain is found at the N-terminus of glucosamine-6P synthase (GlmS, or GFAT in humans). The glutaminase domain catalyzes amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. In humans, GFAT catalyzes the first and rate-limiting step of hexosamine metabolism, the conversion of D-fructose-6P (Fru6P) into D-glucosamine-6P using L-glutamine as a nitrogen source. The end product of this pathway, UDP-N-acetyl glucosamine, is a major building block of the bacterial peptidoglycan and fungal chitin.
Probab=95.48 E-value=0.035 Score=45.59 Aligned_cols=66 Identities=15% Similarity=0.241 Sum_probs=50.0
Q ss_pred cceeEeecccccChHHHHHhh---CC-cccccceeehHHHHHHhHhcCCCCcc---cccccccCceEEEEEec
Q 030252 74 DEIFCLFEGALDNLGSLRQQY---GL-AKSANEVILVIEAYKALRDRAPYPPN---HVVGHLSGTNLVRFLFI 139 (180)
Q Consensus 74 DDIfClF~G~LeNL~~L~qQY---GL-sK~aNEv~lVIEAYRTLRDRgPYPAd---QVVkdL~G~Faf~~~~~ 139 (180)
.++-.++-|.|.|-..||+++ |. -++.++.=++...|....+.++=+.+ ++++.|+|.|||++++.
T Consensus 92 ~~~~~vhNG~I~N~~~Lr~~L~~~g~~~~~~sDsEvi~~l~~~~~~~~~~~~~ai~~~~~~l~G~fa~~~~d~ 164 (215)
T cd00714 92 GEIAVVHNGIIENYAELKEELEAKGYKFESETDTEVIAHLIEYYYDGGLDLLEAVKKALKRLEGAYALAVISK 164 (215)
T ss_pred CCEEEEEeEEEcCHHHHHHHHHhcCCcccCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhccceEEEEEEe
Confidence 378889999999999999987 44 25555555777788776554441111 68999999999999985
No 13
>cd03766 Gn_AT_II_novel Gn_AT_II_novel. This asparagine synthase-related domain is present in eukaryotes but its function has not yet been determined. The glutaminase domain catalyzes an amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. This domain is related to members of the Ntn (N-terminal nucleophile) hydrolase superfamily and is found at the N-terminus of enzymes such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). GLMS catalyzes the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine in amino sugar synthesis. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. Asparagine synthet
Probab=94.36 E-value=0.032 Score=45.22 Aligned_cols=59 Identities=12% Similarity=0.159 Sum_probs=45.5
Q ss_pred cceeEeecccccChHHHHHhhCCcccccceeehHHHHHHhHhcCCCCcccccccccCceEEEEEec
Q 030252 74 DEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGTNLVRFLFI 139 (180)
Q Consensus 74 DDIfClF~G~LeNL~~L~qQYGLsK~aNEv~lVIEAYRTLRDRgPYPAdQVVkdL~G~Faf~~~~~ 139 (180)
+.+..+|-|.|.|-..|++ +.++.-++.++|+.-.+. .=-.-++++.|+|.|||+++|.
T Consensus 72 ~~~~lv~NGeIyN~~~l~~------s~sDtEvi~~l~~~~g~~-~~~i~~~~~~L~G~fA~vi~d~ 130 (181)
T cd03766 72 TGNVLQWNGELYNIDGVED------EENDTEVIFELLANCSSE-SQDILDVLSSIEGPFAFIYYDA 130 (181)
T ss_pred CCEEEEECCEEECcccccC------CCCHHHHHHHHHHHHhhh-HHHHHHHHHhcccceEEEEEeC
Confidence 4688899999999999987 566777888888764421 0001258999999999999987
No 14
>PF13522 GATase_6: Glutamine amidotransferase domain
Probab=94.31 E-value=0.045 Score=41.95 Aligned_cols=59 Identities=17% Similarity=0.222 Sum_probs=47.1
Q ss_pred cceeEeecccccChHHHHHhhCC----cccccceeehHHHHHHhHhcCCCCcccccccccCceEEEEEec
Q 030252 74 DEIFCLFEGALDNLGSLRQQYGL----AKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGTNLVRFLFI 139 (180)
Q Consensus 74 DDIfClF~G~LeNL~~L~qQYGL----sK~aNEv~lVIEAYRTLRDRgPYPAdQVVkdL~G~Faf~~~~~ 139 (180)
.+|...+-|.|+|-..||++++. -++.++.-++...+ ++.| .++++.++|.|+|.+++.
T Consensus 40 g~~~~~HNG~i~n~~~L~~~l~~~g~~~~~~tDSEii~~li---~~~g----~~~l~~l~G~~a~~~~~~ 102 (133)
T PF13522_consen 40 GRIALAHNGNIDNYKELREELGEKGHPFESDTDSEIIAALI---HRWG----EEALERLDGAFAFAVYDK 102 (133)
T ss_pred CCEEEEECCeecCHHHHHHHHHHCCCcccCCCHHHHHHHHH---HHHH----HHHHHHhcCceEEEEEEc
Confidence 56889999999999999999987 24456666666666 3334 888899999999999985
No 15
>TIGR03104 trio_amidotrans asparagine synthase family amidotransferase. Members of this protein family are closely related to several isoforms of asparagine synthetase (glutamine amidotransferase) and typically have been given this name in genome annotation to date. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and a member of the GNAT family of acetyltransferases.
Probab=93.88 E-value=0.15 Score=48.07 Aligned_cols=58 Identities=21% Similarity=0.336 Sum_probs=48.4
Q ss_pred ceeEeecccccChHHHHHhh---CCc-ccccceeehHHHHHHhHhcCCCCcccccccccCceEEEEEec
Q 030252 75 EIFCLFEGALDNLGSLRQQY---GLA-KSANEVILVIEAYKALRDRAPYPPNHVVGHLSGTNLVRFLFI 139 (180)
Q Consensus 75 DIfClF~G~LeNL~~L~qQY---GLs-K~aNEv~lVIEAYRTLRDRgPYPAdQVVkdL~G~Faf~~~~~ 139 (180)
.+-.+|-|.|.|-..|++++ |.. ++.+++-++.++|+.- | .+++++|+|.|||++++-
T Consensus 69 ~~~~v~nGeiyN~~eL~~~l~~~g~~f~~~sD~Evil~~y~~~---G----~~~~~~l~G~fa~~i~d~ 130 (589)
T TIGR03104 69 GLALVFNGCIYNYRELRAELEALGYRFFSDGDTEVILKAYHAW---G----RDCVSRFNGMFAFAIWER 130 (589)
T ss_pred CEEEEECCEecCHHHHHHHHHhcCCcccCCCHHHHHHHHHHHH---H----HHHHHHhhcceEEEEEeC
Confidence 46778999999999999987 432 6777888899999864 3 479999999999999876
No 16
>TIGR01135 glmS glucosamine--fructose-6-phosphate aminotransferase (isomerizing). The member from Methanococcus jannaschii contains an intein.
Probab=92.46 E-value=0.21 Score=46.68 Aligned_cols=65 Identities=14% Similarity=0.211 Sum_probs=46.8
Q ss_pred cceeEeecccccChHHHHHhhC---Cc-ccccceeehHHHHHHhHhcCCCCcc----cccccccCceEEEEEec
Q 030252 74 DEIFCLFEGALDNLGSLRQQYG---LA-KSANEVILVIEAYKALRDRAPYPPN----HVVGHLSGTNLVRFLFI 139 (180)
Q Consensus 74 DDIfClF~G~LeNL~~L~qQYG---Ls-K~aNEv~lVIEAYRTLRDRgPYPAd----QVVkdL~G~Faf~~~~~ 139 (180)
..+..++-|.|.|...||+++. .. ++.++.=++.-.|....++|+ ... ++++.|+|.|+|++++.
T Consensus 92 ~~~~~vhNG~I~N~~~Lr~~L~~~g~~~~~~tDsEvi~~l~~~~~~~~~-~~~~ai~~~~~~l~G~~a~~i~~~ 164 (607)
T TIGR01135 92 GRIAVVHNGIIENYAELREELEARGHVFVSDTDTEVIAHLIEEYLREGG-DLLEAVQKALKQLRGAYALAVLHA 164 (607)
T ss_pred CCEEEEEecccCCHHHHHHHHHhCCCccccCCHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHhcCceEEEEEec
Confidence 4578899999999999999973 21 333444455566766555443 111 68999999999999986
No 17
>PRK00331 glucosamine--fructose-6-phosphate aminotransferase; Reviewed
Probab=91.16 E-value=0.62 Score=43.55 Aligned_cols=66 Identities=14% Similarity=0.198 Sum_probs=47.8
Q ss_pred cceeEeecccccChHHHHHhh---CC-cccccceeehHHHHHHhHhcCCCCc---ccccccccCceEEEEEec
Q 030252 74 DEIFCLFEGALDNLGSLRQQY---GL-AKSANEVILVIEAYKALRDRAPYPP---NHVVGHLSGTNLVRFLFI 139 (180)
Q Consensus 74 DDIfClF~G~LeNL~~L~qQY---GL-sK~aNEv~lVIEAYRTLRDRgPYPA---dQVVkdL~G~Faf~~~~~ 139 (180)
+++..++-|.|.|-..||+++ |. -++.++.=++.-.|....+-|+=+. .++++.|+|.|+|++++.
T Consensus 93 ~~~~~vhNG~I~N~~~Lr~~l~~~g~~~~~~sDsEvi~~l~~~~~~~g~~~~~a~~~~~~~l~G~~a~~~~d~ 165 (604)
T PRK00331 93 GRIAVVHNGIIENYAELKEELLAKGHVFKSETDTEVIAHLIEEELKEGGDLLEAVRKALKRLEGAYALAVIDK 165 (604)
T ss_pred CCEEEEEeEEEcCHHHHHHHHHhCCCcccCCCHHHHHHHHHHHHHhhCCCHHHHHHHHHHhccCeeEEEEEec
Confidence 678889999999999999987 33 2444554455667766533342111 368999999999999996
No 18
>cd01907 GlxB Glutamine amidotransferases class-II (Gn-AT)_GlxB-type. GlxB is a glutamine amidotransferase-like protein of unknown function found in bacteria and archaea. GlxB has a structural fold similar to that of other class II glutamine amidotransferases including glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The GlxB fold is also somewhat similar to the Ntn (N-terminal nucleophile) hydrolase fold of the proteasomal alpha and beta subunits.
Probab=89.96 E-value=0.72 Score=39.09 Aligned_cols=67 Identities=16% Similarity=0.214 Sum_probs=43.8
Q ss_pred ceeEeecccccChHHHHHhh---CC-cccccceeehHHHHHHhHhcCCCCcc----------------------cccccc
Q 030252 75 EIFCLFEGALDNLGSLRQQY---GL-AKSANEVILVIEAYKALRDRAPYPPN----------------------HVVGHL 128 (180)
Q Consensus 75 DIfClF~G~LeNL~~L~qQY---GL-sK~aNEv~lVIEAYRTLRDRgPYPAd----------------------QVVkdL 128 (180)
++..++-|.|.|...||+++ |. -++.++.=++.-.|..+...+-.|.+ .+++.|
T Consensus 104 ~~~lvhNG~I~N~~~lr~~L~~~g~~~~~~sDsEvi~~ll~~~~~~~g~~~~a~~~~i~~~~~~~~~~~~~~~~~~~~~l 183 (249)
T cd01907 104 DIAVVHNGEISNYGSNREYLERFGYKFETETDTEVIAYYLDLLLRKGGLPLEYYKHIIRMPEEERELLLALRLTYRLADL 183 (249)
T ss_pred CEEEEeCCeecCHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHhCCChHHHHHHHhcCCHhHHHHHHHHHHHhCcccC
Confidence 88999999999999999876 32 13333333334444433322222322 588999
Q ss_pred cCceEEEEEecch
Q 030252 129 SGTNLVRFLFIGE 141 (180)
Q Consensus 129 ~G~Faf~~~~~g~ 141 (180)
+|.|+|++.+-..
T Consensus 184 ~G~~a~~~~~~~~ 196 (249)
T cd01907 184 DGPFTIIVGTPDG 196 (249)
T ss_pred CCCEEEEEEeCCe
Confidence 9999999987643
No 19
>PTZ00295 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=86.65 E-value=0.93 Score=43.13 Aligned_cols=64 Identities=19% Similarity=0.271 Sum_probs=44.9
Q ss_pred cceeEeecccccChHHHHHhh---CC---cccccceeehHHHHHHhHhcCCCCc---ccccccccCceEEEEEec
Q 030252 74 DEIFCLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAYKALRDRAPYPP---NHVVGHLSGTNLVRFLFI 139 (180)
Q Consensus 74 DDIfClF~G~LeNL~~L~qQY---GL---sK~aNEv~lVIEAYRTLRDRgPYPA---dQVVkdL~G~Faf~~~~~ 139 (180)
+++-.++-|.|.|-..||+++ |. +.+-.|+++ -.|....+.|.-+. .+++++|+|.|+|++++.
T Consensus 123 ~~~~~vhNG~I~N~~~Lr~~L~~~g~~f~s~tDsEvi~--~li~~~~~~g~~~~~a~~~~~~~l~G~~a~~~~~~ 195 (640)
T PTZ00295 123 KRIALVHNGTIENYVELKSELIAKGIKFRSETDSEVIA--NLIGLELDQGEDFQEAVKSAISRLQGTWGLCIIHK 195 (640)
T ss_pred CCEEEEEEEEEcCHHHHHHHHHHCCCcccCCChHHHHH--HHHHHHHhcCCCHHHHHHHHHHHhhhhceEEEEEe
Confidence 578889999999999999985 32 455556554 33443333442111 258999999999999985
No 20
>PLN02981 glucosamine:fructose-6-phosphate aminotransferase
Probab=86.54 E-value=1.7 Score=42.20 Aligned_cols=67 Identities=19% Similarity=0.370 Sum_probs=46.2
Q ss_pred ccceeEeecccccChHHHHHhh---CC---cccccceeehH-H-HHHHhHhc-CCCCcc----cccccccCceEEEEEec
Q 030252 73 KDEIFCLFEGALDNLGSLRQQY---GL---AKSANEVILVI-E-AYKALRDR-APYPPN----HVVGHLSGTNLVRFLFI 139 (180)
Q Consensus 73 ~DDIfClF~G~LeNL~~L~qQY---GL---sK~aNEv~lVI-E-AYRTLRDR-gPYPAd----QVVkdL~G~Faf~~~~~ 139 (180)
...|..++-|.|.|-..||+++ |- |.+-.|++.-+ + .|+.+... |++... +++++|+|.|+|++++.
T Consensus 114 ~~~ialvhNG~I~N~~eLr~~L~~~G~~f~s~tDtEvi~~li~~~~~~~~~~~~~~~~~~a~~~~~~~l~G~ya~~i~~~ 193 (680)
T PLN02981 114 GNEFLVVHNGIITNYEVLKETLLRHGFTFESDTDTEVIPKLAKFVFDKLNEEEGDVTFSQVVMEVMRQLEGAYALIFKSP 193 (680)
T ss_pred CCcEEEEECceEecHHHHHHHHHhCCCeeccCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHhccCccceEEEec
Confidence 3578999999999999999986 32 45556766532 2 25443322 212222 48999999999999984
No 21
>PRK07847 amidophosphoribosyltransferase; Provisional
Probab=86.30 E-value=0.85 Score=43.37 Aligned_cols=68 Identities=16% Similarity=0.118 Sum_probs=45.8
Q ss_pred ccceeEeecccccChHHHHHhh---CC------cccccceeehHHHHHHhHhcCCCCc--ccccccccCceEEEEEecc
Q 030252 73 KDEIFCLFEGALDNLGSLRQQY---GL------AKSANEVILVIEAYKALRDRAPYPP--NHVVGHLSGTNLVRFLFIG 140 (180)
Q Consensus 73 ~DDIfClF~G~LeNL~~L~qQY---GL------sK~aNEv~lVIEAYRTLRDRgPYPA--dQVVkdL~G~Faf~~~~~g 140 (180)
..++-..+-|.|.|-..||++. |. -++.++.=++...|....+.+.+.. .++++.++|.|+|++++-+
T Consensus 118 ~g~ialvHNG~I~N~~eLr~~L~~~G~~~~~~~f~s~sDSEVI~~Li~~~~~~~~~~eai~~~~~~l~G~yA~vi~d~~ 196 (510)
T PRK07847 118 GGGVALGHNGNLVNTAELAARARDRGLIRGRDPAGATTDTDLVTALLAHGAADSTLEQAALELLPTVRGAFCLVFMDEH 196 (510)
T ss_pred CCCEEEEEEEEEeCHHHHHHHHHhcCCccccCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHhhhheEEEEEECC
Confidence 4678899999999999999987 42 2344433344444544333332211 2489999999999999853
No 22
>PTZ00394 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=86.11 E-value=0.86 Score=44.17 Aligned_cols=77 Identities=18% Similarity=0.213 Sum_probs=52.4
Q ss_pred cceeEeecccccChHHHHHhh---C--C-cccccceee-hHH-HHHHhHhcCCCCc----ccccccccCceEEEEEec--
Q 030252 74 DEIFCLFEGALDNLGSLRQQY---G--L-AKSANEVIL-VIE-AYKALRDRAPYPP----NHVVGHLSGTNLVRFLFI-- 139 (180)
Q Consensus 74 DDIfClF~G~LeNL~~L~qQY---G--L-sK~aNEv~l-VIE-AYRTLRDRgPYPA----dQVVkdL~G~Faf~~~~~-- 139 (180)
..|-.++-|.|.|-..||+++ | + |.+-+|++. .|| .|+ +.|.... -+++++|+|.|||++++.
T Consensus 125 ~~i~vvhNG~I~N~~eLr~~L~~~g~~f~s~tDtEvi~~li~~~~~---~~g~~~~~~a~~~~~~~l~G~ya~~i~~~~~ 201 (670)
T PTZ00394 125 GEFTIVHNGIVTNYMTLKELLKEEGYHFSSDTDTEVISVLSEYLYT---RKGIHNFADLALEVSRMVEGSYALLVKSVYF 201 (670)
T ss_pred CCEEEEECeeEecHHHHHHHHHHcCCEecCCChHHHHHHHHHHHHH---hcCCCCHHHHHHHHHHHccCceEEEEEecCC
Confidence 568889999999999999985 3 2 567778776 343 353 2343222 168999999999999874
Q ss_pred ch--hhhhcchhHHHH
Q 030252 140 GE--SLLMDMLPLLMM 153 (180)
Q Consensus 140 g~--~~~~d~l~~~~~ 153 (180)
++ ...-|.-||.+-
T Consensus 202 ~~~l~~~Rd~~PL~iG 217 (670)
T PTZ00394 202 PGQLAASRKGSPLMVG 217 (670)
T ss_pred CCEEEEEEcCCceEEE
Confidence 22 233466666443
No 23
>cd00715 GPATase_N Glutamine amidotransferases class-II (GN-AT)_GPAT- type. This domain is found at the N-terminus of glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase) . The glutaminase domain catalyzes amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. GPATase crystalizes as a homotetramer, but can also exist as a homdimer.
Probab=86.09 E-value=0.81 Score=38.32 Aligned_cols=71 Identities=10% Similarity=0.133 Sum_probs=47.8
Q ss_pred cceeEeecccccChHHHHHhhCC----cccccceeehHHHHHHhHhc-CCCCc-ccccccccCceEEEEEecchhhh
Q 030252 74 DEIFCLFEGALDNLGSLRQQYGL----AKSANEVILVIEAYKALRDR-APYPP-NHVVGHLSGTNLVRFLFIGESLL 144 (180)
Q Consensus 74 DDIfClF~G~LeNL~~L~qQYGL----sK~aNEv~lVIEAYRTLRDR-gPYPA-dQVVkdL~G~Faf~~~~~g~~~~ 144 (180)
.++..++-|.|+|-..|+++++. -++.++.-++..+|...-++ .+.-| .++++.++|.|+|++++-+..++
T Consensus 94 ~~~~~~hNG~I~n~~~L~~~l~~~g~~~~~~tDSEvi~~l~~~~~~~~~~~~al~~~~~~l~G~~a~~~~d~~~l~~ 170 (252)
T cd00715 94 GGIALAHNGNLVNAKELREELEEEGRIFQTTSDSEVILHLIARSLAKDDLFEAIIDALERVKGAYSLVIMTADGLIA 170 (252)
T ss_pred CcEEEEEEEEECCHHHHHHHHHHCCCcccCCCHHHHHHHHHHHhhccCCHHHHHHHHHHhccCceEEEEEECCEEEE
Confidence 56888999999999999998742 13445555555666554332 11111 25889999999999988744443
No 24
>PRK08525 amidophosphoribosyltransferase; Provisional
Probab=83.61 E-value=0.96 Score=41.85 Aligned_cols=71 Identities=14% Similarity=0.168 Sum_probs=45.9
Q ss_pred cceeEeecccccChHHHHHhh---CCc-ccccceeehHHHHHHhHhcCCCC--cccccccccCceEEEEEecchhhhh
Q 030252 74 DEIFCLFEGALDNLGSLRQQY---GLA-KSANEVILVIEAYKALRDRAPYP--PNHVVGHLSGTNLVRFLFIGESLLM 145 (180)
Q Consensus 74 DDIfClF~G~LeNL~~L~qQY---GLs-K~aNEv~lVIEAYRTLRDRgPYP--AdQVVkdL~G~Faf~~~~~g~~~~~ 145 (180)
.++-.+|-|.|.|-..||+.+ |.. ++.++.=++...|....+ +... .-++++.|+|.|||++++-+..+..
T Consensus 95 g~~~lvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEvi~~l~~~~~~-~~~~ea~~~~~~~L~G~fa~vi~~~~~l~~~ 171 (445)
T PRK08525 95 GEIAIVHNGNLVNKKEVRSRLIQDGAIFQTNMDTENLIHLIARSKK-ESLKDRIIEALKKIIGAYCLVLLSRSKMFAI 171 (445)
T ss_pred CCEEEEEEEEEECHHHHHHHHHhcCCcCCCCCHHHHHHHHHHHHcC-CCHHHHHHHHHHhcCCceEEEEEeCCEEEEE
Confidence 578889999999999999886 321 333333344555543321 1110 1257899999999999886544443
No 25
>PRK07349 amidophosphoribosyltransferase; Provisional
Probab=82.93 E-value=1.5 Score=41.59 Aligned_cols=79 Identities=15% Similarity=0.058 Sum_probs=51.4
Q ss_pred cceeEeecccccChHHHHHhh---CCc-ccccceeehHHHHHHhHhcCCCCc---ccccccccCceEEEEEecchh-hhh
Q 030252 74 DEIFCLFEGALDNLGSLRQQY---GLA-KSANEVILVIEAYKALRDRAPYPP---NHVVGHLSGTNLVRFLFIGES-LLM 145 (180)
Q Consensus 74 DDIfClF~G~LeNL~~L~qQY---GLs-K~aNEv~lVIEAYRTLRDRgPYPA---dQVVkdL~G~Faf~~~~~g~~-~~~ 145 (180)
.++-..+-|.|.|-..||+++ |.. ++.++.=++.-.|....++|.=+. .++++.|+|.|+|++++-+.. ..-
T Consensus 128 g~ialvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEVi~~li~~~~~~~~~~~eai~~~~~~l~G~ya~vi~~~~~l~aaR 207 (500)
T PRK07349 128 GPLALAHNGNLVNTVELREELLARGCELTTTTDSEMIAFAIAQAVDAGKDWLEAAISAFQRCQGAFSLVIGTPEGLMGVR 207 (500)
T ss_pred CCEEEEEEEEEeCHHHHHHHHHhCCCcCCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhEEEEEEeCCEEEEEE
Confidence 468889999999999999986 432 334433344455554444442122 368899999999999765333 334
Q ss_pred cch---hHHH
Q 030252 146 DML---PLLM 152 (180)
Q Consensus 146 d~l---~~~~ 152 (180)
|-. ||.+
T Consensus 208 Dp~GiRPL~~ 217 (500)
T PRK07349 208 DPNGIRPLVI 217 (500)
T ss_pred CCCCCCCeEE
Confidence 555 6644
No 26
>COG0449 GlmS Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains [Cell envelope biogenesis, outer membrane]
Probab=81.06 E-value=0.25 Score=48.19 Aligned_cols=102 Identities=21% Similarity=0.251 Sum_probs=72.7
Q ss_pred cceeEeecccccChHHHHHhhC------Cccccccee--ehHHHHHHhHhcCCCCc-ccccccccCceEEEEEecch--h
Q 030252 74 DEIFCLFEGALDNLGSLRQQYG------LAKSANEVI--LVIEAYKALRDRAPYPP-NHVVGHLSGTNLVRFLFIGE--S 142 (180)
Q Consensus 74 DDIfClF~G~LeNL~~L~qQYG------LsK~aNEv~--lVIEAYRTLRDRgPYPA-dQVVkdL~G~Faf~~~~~g~--~ 142 (180)
+.|--+--|.|||-..||..|= .|.+-+||+ ++=+.|+.. ..=| -++++.|+|+||+++.+.+. .
T Consensus 92 ~~~avVHNGIIeN~~eLr~eL~~~G~~F~S~TDTEVi~hLi~~~~~~~----~~~a~~~~l~~l~Gsyal~~~~~~~p~~ 167 (597)
T COG0449 92 GEFAVVHNGIIENFAELKEELEAKGYVFKSDTDTEVIAHLLEEIYDTS----LLEAVKKVLKRLEGSYALLCTHSDFPDE 167 (597)
T ss_pred CCEEEEeCchhhCHHHHHHHHHhcCCEEecCCchHHHHHHHHHHHHhH----HHHHHHHHHHHhcceeEEEEEecCCCCe
Confidence 7788899999999999998875 278888876 444556542 1112 35899999999999999854 2
Q ss_pred h--hhcchhHHHHHHhHHHHHhhhhhhheeecccccccc
Q 030252 143 L--LMDMLPLLMMLTCSKVLAASHLLLSLKVVSSQQQLE 179 (180)
Q Consensus 143 ~--~~d~l~~~~~~~c~k~~a~~~~~~~~~~~~~~~~~~ 179 (180)
+ .--.=||+|-.|....|-||-..-.+++...-.-||
T Consensus 168 i~~ar~~sPL~iG~g~~e~f~aSD~~a~l~~t~~~~~l~ 206 (597)
T COG0449 168 LVAARKGSPLVIGVGEGENFLASDVSALLNFTRRFVYLE 206 (597)
T ss_pred EEEEcCCCCeEEEecCCcceEecChhhhhhhhceEEEeC
Confidence 2 224557778888888888887776666555444443
No 27
>PRK08341 amidophosphoribosyltransferase; Provisional
Probab=80.21 E-value=0.95 Score=42.18 Aligned_cols=68 Identities=25% Similarity=0.402 Sum_probs=46.3
Q ss_pred cceeEeecccccChHHHHHhh---CC---ccccccee--ehHHHHHHhHhcCCC-C-cccccccccCceEEEEEecchhh
Q 030252 74 DEIFCLFEGALDNLGSLRQQY---GL---AKSANEVI--LVIEAYKALRDRAPY-P-PNHVVGHLSGTNLVRFLFIGESL 143 (180)
Q Consensus 74 DDIfClF~G~LeNL~~L~qQY---GL---sK~aNEv~--lVIEAYRTLRDRgPY-P-AdQVVkdL~G~Faf~~~~~g~~~ 143 (180)
..|-..+-|.|.|-..||+++ |. +-+-+|++ ++.+.|+ +.|.. . -.++++.|+|.|+|++++-+..+
T Consensus 94 g~ialvhNG~I~N~~eLr~~L~~~G~~F~s~sDtEVI~~li~~~~~---~~~~~~~ai~~~~~~l~G~yal~i~~~~~l~ 170 (442)
T PRK08341 94 YKIAIAHNGTLTNFLPLRRKYESRGVKFRSSVDTELIGISFLWHYS---ETGDEFEAMREVFNEVKGAYSVAILFDGKII 170 (442)
T ss_pred CCEEEEEEEEEECHHHHHHHHHHcCCccCCCCHHHHHHHHHHHHHH---hcCCHHHHHHHHHHhccCceEEEEEECCEEE
Confidence 467789999999999999986 32 35566776 3345553 33321 0 12478999999999998765443
Q ss_pred h
Q 030252 144 L 144 (180)
Q Consensus 144 ~ 144 (180)
.
T Consensus 171 a 171 (442)
T PRK08341 171 V 171 (442)
T ss_pred E
Confidence 3
No 28
>PRK06388 amidophosphoribosyltransferase; Provisional
Probab=78.41 E-value=2.3 Score=40.11 Aligned_cols=77 Identities=19% Similarity=0.253 Sum_probs=48.6
Q ss_pred cceeEeecccccChHHHHHhh---C--C-cccccceeehHHHHHHhHhcCCCC--cccccccccCceEEEEEecchhh-h
Q 030252 74 DEIFCLFEGALDNLGSLRQQY---G--L-AKSANEVILVIEAYKALRDRAPYP--PNHVVGHLSGTNLVRFLFIGESL-L 144 (180)
Q Consensus 74 DDIfClF~G~LeNL~~L~qQY---G--L-sK~aNEv~lVIEAYRTLRDRgPYP--AdQVVkdL~G~Faf~~~~~g~~~-~ 144 (180)
.++-..+-|.|.|-..||+++ | + +.+-.|+++ ..|.....++-.. -..+++.|+|.|+|+++.-++.+ .
T Consensus 112 g~ialvhNG~I~N~~eLr~~L~~~G~~F~s~sDtEVi~--~li~~~~~~~~~~eai~~~~~~l~G~ya~vi~~~~~l~a~ 189 (474)
T PRK06388 112 GYIGISHNGEIVNADELREEMKKEGYIFQSDSDTEVML--AELSRNISKYGLKEGFERSMERLRGAYACALMINDRLYAI 189 (474)
T ss_pred CCEEEEECceECCHHHHHHHHHHCCCcccCCCHHHHHH--HHHHHHHhcCCHHHHHHHHHHhccCceeEEEEECCEEEEE
Confidence 468889999999999999986 3 2 455556543 3332211121110 03589999999999998664432 3
Q ss_pred hcch---hHHH
Q 030252 145 MDML---PLLM 152 (180)
Q Consensus 145 ~d~l---~~~~ 152 (180)
-|-. ||.+
T Consensus 190 RDp~GiRPL~~ 200 (474)
T PRK06388 190 RDPNGIRPLVL 200 (474)
T ss_pred ECCCCCCceEE
Confidence 4555 6543
No 29
>PRK09123 amidophosphoribosyltransferase; Provisional
Probab=76.40 E-value=1.8 Score=40.78 Aligned_cols=67 Identities=22% Similarity=0.277 Sum_probs=43.8
Q ss_pred cceeEeecccccChHHHHHhh---C--C-cccccceeehHHHHHHhHhcCCCC-c-ccccccccCceEEEEEecchhh
Q 030252 74 DEIFCLFEGALDNLGSLRQQY---G--L-AKSANEVILVIEAYKALRDRAPYP-P-NHVVGHLSGTNLVRFLFIGESL 143 (180)
Q Consensus 74 DDIfClF~G~LeNL~~L~qQY---G--L-sK~aNEv~lVIEAYRTLRDRgPYP-A-dQVVkdL~G~Faf~~~~~g~~~ 143 (180)
.++-.++-|.|.|-..||+++ | + +.+-.|+++ ..|..... +.+. | .++++.|+|.|+|++++-+..+
T Consensus 116 g~~alvhNG~I~N~~eLr~~L~~~G~~f~s~sDSEvi~--~Li~~~~~-~~~~eai~~~~~~L~G~ya~vil~~~~l~ 190 (479)
T PRK09123 116 GGLAIAHNGNLTNALTLRRELIRRGAIFQSTSDTEVIL--HLIARSRK-ASFLDRFIDALRQVEGAYSLVALTNTKLI 190 (479)
T ss_pred CCEEEEEEEEEeCHHHHHHHHHhCCCcCCCCCHHHHHH--HHHHHHcc-CCHHHHHHHHHHHhhcceeEEEEECCEEE
Confidence 467889999999999999986 2 2 344556544 33322111 1111 1 3578999999999998765433
No 30
>COG0367 AsnB Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]
Probab=76.09 E-value=3.4 Score=39.23 Aligned_cols=61 Identities=15% Similarity=0.267 Sum_probs=46.4
Q ss_pred cceeEeecccccChHHHHHhhC----CcccccceeehHHHHHHhHhcCCCCcccccccccCceEEEEEecch
Q 030252 74 DEIFCLFEGALDNLGSLRQQYG----LAKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGTNLVRFLFIGE 141 (180)
Q Consensus 74 DDIfClF~G~LeNL~~L~qQYG----LsK~aNEv~lVIEAYRTLRDRgPYPAdQVVkdL~G~Faf~~~~~g~ 141 (180)
+.+...|-|-|-|-..||.... .-++..+.=+|+.+|...= .| +++.|.|-|||.+||.+.
T Consensus 67 ~~~~l~~NGEIYN~~elr~~l~~~g~~f~t~sDtEvil~~y~~~g------~~-~~~~l~G~fAfai~d~~~ 131 (542)
T COG0367 67 GKYAIVYNGEIYNVEELRKELREAGYEFRTYSDTEVILTLYEEWG------ED-CVEHLNGMFAFAIYDETR 131 (542)
T ss_pred CcEEEEECCEeeeHHHHHHHHHhcCceeccccchHHHHHHHHHHH------HH-HHHHhccceEEEEEECCC
Confidence 4589999999999999999888 2334444444566776542 22 999999999999999955
No 31
>PRK07631 amidophosphoribosyltransferase; Provisional
Probab=75.92 E-value=2.9 Score=39.47 Aligned_cols=66 Identities=20% Similarity=0.197 Sum_probs=43.7
Q ss_pred cceeEeecccccChHHHHHhh---CC---cccccceeehHHHHHHhHhcCCCC-c-ccccccccCceEEEEEecchh
Q 030252 74 DEIFCLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAYKALRDRAPYP-P-NHVVGHLSGTNLVRFLFIGES 142 (180)
Q Consensus 74 DDIfClF~G~LeNL~~L~qQY---GL---sK~aNEv~lVIEAYRTLRDRgPYP-A-dQVVkdL~G~Faf~~~~~g~~ 142 (180)
.++-..+-|.|.|-..||+++ |. +.+-.|+ +...|....+ +++. | ..+++.++|.|+|++++-+..
T Consensus 105 g~ialvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEV--i~~Li~~~~~-~~~~eai~~~~~~l~G~yalvi~~~~~l 178 (475)
T PRK07631 105 GSLALAHNGNLVNATQLKLQLENQGSIFQTTSDTEV--LAHLIKRSGA-PTLKEQIKNALSMLKGAYAFLLMTETEL 178 (475)
T ss_pred CCEEEEEEEEEECHHHHHHHHHhCCCcCCCCCHHHH--HHHHHHHHcC-CCHHHHHHHHHHhCCCCceeeEEeCCEE
Confidence 468899999999999999876 43 3444454 4444443221 1100 0 147899999999999986543
No 32
>PRK09246 amidophosphoribosyltransferase; Provisional
Probab=75.22 E-value=4.4 Score=38.15 Aligned_cols=70 Identities=20% Similarity=0.328 Sum_probs=45.1
Q ss_pred ceeEeecccccChHHHHHhh-----CCcccccceeehHHHHHH-hHhc-C--CCCcc------cccccccCceEEEEEec
Q 030252 75 EIFCLFEGALDNLGSLRQQY-----GLAKSANEVILVIEAYKA-LRDR-A--PYPPN------HVVGHLSGTNLVRFLFI 139 (180)
Q Consensus 75 DIfClF~G~LeNL~~L~qQY-----GLsK~aNEv~lVIEAYRT-LRDR-g--PYPAd------QVVkdL~G~Faf~~~~~ 139 (180)
.+-..+-|.|.|-..||++. +--+++++.=+++..|.. |+.. | +=+.+ .+++.++|.|+|+++..
T Consensus 95 g~alahNG~I~N~~eLr~~L~~~~~~~f~s~sDsEvi~~li~~~l~~~~g~~~~~~~l~eai~~~~~~l~Gays~v~~~~ 174 (501)
T PRK09246 95 GITLAHNGNLTNAEELRKELFEKDRRHINTTSDSEVLLNVFAHELQKFRGLPLTPEDIFAAVAAVHRRVRGAYAVVAMII 174 (501)
T ss_pred CEEEEEeEEEcCHHHHHHHHHhcCCCeeecCCHHHHHHHHHHHHHHhccccccCccCHHHHHHHHHHhcccceeeEEEec
Confidence 48889999999999999864 222445544455555543 3321 2 11123 68899999999997755
Q ss_pred chhhh
Q 030252 140 GESLL 144 (180)
Q Consensus 140 g~~~~ 144 (180)
+..++
T Consensus 175 ~~~l~ 179 (501)
T PRK09246 175 GHGLV 179 (501)
T ss_pred CCcEE
Confidence 44443
No 33
>PLN02440 amidophosphoribosyltransferase
Probab=73.14 E-value=2 Score=40.19 Aligned_cols=69 Identities=16% Similarity=0.187 Sum_probs=45.9
Q ss_pred ceeEeecccccChHHHHHhhCC----cccccceeehHHHHHHhHhcCCCC-cccccccccCceEEEEEecchhh
Q 030252 75 EIFCLFEGALDNLGSLRQQYGL----AKSANEVILVIEAYKALRDRAPYP-PNHVVGHLSGTNLVRFLFIGESL 143 (180)
Q Consensus 75 DIfClF~G~LeNL~~L~qQYGL----sK~aNEv~lVIEAYRTLRDRgPYP-AdQVVkdL~G~Faf~~~~~g~~~ 143 (180)
++...+-|.|.|-..||+++.. -++.++.-++..+|....+..++- -.++++.++|.|+|++++-+..+
T Consensus 96 ~~~lahNG~I~N~~eLr~~L~~~g~~f~s~sDsEvi~~li~~~~~~~~~~a~~~~~~~l~G~fa~vi~~~~~l~ 169 (479)
T PLN02440 96 SIGVAHNGNLVNYEELRAKLEENGSIFNTSSDTEVLLHLIAISKARPFFSRIVDACEKLKGAYSMVFLTEDKLV 169 (479)
T ss_pred CEEEEEEEEEeCHHHHHHHHHhcCCcCCCCCHHHHHHHHHHHhhhhhHHHHHHHHHHHhccceeeeEEECCEEE
Confidence 5888999999999999998632 144455445555554322111111 13578999999999999876543
No 34
>PRK06781 amidophosphoribosyltransferase; Provisional
Probab=70.58 E-value=5.5 Score=37.54 Aligned_cols=68 Identities=13% Similarity=0.146 Sum_probs=44.9
Q ss_pred cceeEeecccccChHHHHHhhCC----cccccceeehHHHHHHhHhcCCCCc---ccccccccCceEEEEEecchhh
Q 030252 74 DEIFCLFEGALDNLGSLRQQYGL----AKSANEVILVIEAYKALRDRAPYPP---NHVVGHLSGTNLVRFLFIGESL 143 (180)
Q Consensus 74 DDIfClF~G~LeNL~~L~qQYGL----sK~aNEv~lVIEAYRTLRDRgPYPA---dQVVkdL~G~Faf~~~~~g~~~ 143 (180)
.++-..+-|.|.|-..||+++.- -++.++.=++...|...-. +. +. -.+++.++|.|+|++++-+..+
T Consensus 105 g~~alvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEvI~~Li~~~~~-~~-~~eai~~~~~~l~G~ya~vi~~~~~l~ 179 (471)
T PRK06781 105 HSMALAHNGNLINAKMLRRELEAEGSIFQTSSDTEVLLHLIKRSTK-DS-LIESVKEALNKVKGAFAYLLLTGNEMI 179 (471)
T ss_pred CCEEEEEEEEEcCHHHHHHHHHhCCCcCCCCCHHHHHHHHHHHHcC-CC-HHHHHHHHHHhCCCcEEEEEEECCEEE
Confidence 47889999999999999999631 1334433344455543211 11 10 2368999999999999865543
No 35
>TIGR01134 purF amidophosphoribosyltransferase. Alternate name: glutamine phosphoribosylpyrophosphate (PRPP) amidotransferase.
Probab=65.42 E-value=13 Score=34.45 Aligned_cols=70 Identities=13% Similarity=0.136 Sum_probs=46.4
Q ss_pred cceeEeecccccChHHHHHhhC---C-cccccceeehHHHHHHhHhcC-CCC-c-ccccccccCceEEEEEecchhh
Q 030252 74 DEIFCLFEGALDNLGSLRQQYG---L-AKSANEVILVIEAYKALRDRA-PYP-P-NHVVGHLSGTNLVRFLFIGESL 143 (180)
Q Consensus 74 DDIfClF~G~LeNL~~L~qQYG---L-sK~aNEv~lVIEAYRTLRDRg-PYP-A-dQVVkdL~G~Faf~~~~~g~~~ 143 (180)
+.+-..+-|.|.|-..|++... . -++.++.-++..+|......+ ... | .++++.++|.|+|++++-+..+
T Consensus 94 ~g~alahNG~I~N~~eLr~~L~~~g~~f~~~sDSEvi~~li~~~~~~~~~~~~ai~~~~~~l~G~falvi~~~~~L~ 170 (442)
T TIGR01134 94 GGIALAHNGNLVNAEELREELEEEGRIFNTTSDSEVLLHLLARERLEEDDLFEAIARVLKRVRGAYALVIMIGDGLI 170 (442)
T ss_pred CCEEEEEEEEEcCHHHHHHHHHhcCCcCCCCCHHHHHHHHHHHhhcccCCHHHHHHHHHHHhCccceEEEEECCEEE
Confidence 3488899999999999998863 2 144555556666665533111 110 0 2578999999999999654433
No 36
>PRK07272 amidophosphoribosyltransferase; Provisional
Probab=60.38 E-value=7.6 Score=36.84 Aligned_cols=71 Identities=15% Similarity=0.175 Sum_probs=46.0
Q ss_pred cceeEeecccccChHHHHHhh---CC---cccccceeehHHHHHHhHhcCCCC--cccccccccCceEEEEEecchhhhh
Q 030252 74 DEIFCLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAYKALRDRAPYP--PNHVVGHLSGTNLVRFLFIGESLLM 145 (180)
Q Consensus 74 DDIfClF~G~LeNL~~L~qQY---GL---sK~aNEv~lVIEAYRTLRDRgPYP--AdQVVkdL~G~Faf~~~~~g~~~~~ 145 (180)
.++-..+-|.|.|-..||+++ |. +.+-+|+++ ..|..-.. +.+. -.++++.|+|.|+|++++-+..+..
T Consensus 106 g~ialvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEVI~--~Li~~~~~-~~~~eai~~~~~~l~G~ya~~i~~~~~l~a~ 182 (484)
T PRK07272 106 MQFGLAHNGNLTNAVSLRKELEKQGAIFHSSSDTEILM--HLIRRSHN-PTFMGKLKEALNTVKGGFAYLLLTEDKLIAA 182 (484)
T ss_pred CCEEEEEEEEEeCHHHHHHHHHhCCCCCCCCCHHHHHH--HHHHHHcC-CCHHHHHHHHHHHccCceeEEEEECCEEEEE
Confidence 467889999999999999986 32 344456443 33332111 1111 0257899999999999887655444
Q ss_pred cc
Q 030252 146 DM 147 (180)
Q Consensus 146 d~ 147 (180)
=|
T Consensus 183 RD 184 (484)
T PRK07272 183 LD 184 (484)
T ss_pred EC
Confidence 33
No 37
>PRK03946 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=59.27 E-value=7.5 Score=35.20 Aligned_cols=36 Identities=14% Similarity=0.074 Sum_probs=26.5
Q ss_pred ccceeehHHHHHHhHhc-------CCCCcccccc-cccCceEEEE
Q 030252 100 ANEVILVIEAYKALRDR-------APYPPNHVVG-HLSGTNLVRF 136 (180)
Q Consensus 100 aNEv~lVIEAYRTLRDR-------gPYPAdQVVk-dL~G~Faf~~ 136 (180)
.-|. +++-|-+.||++ ||||||-+-. ...|+|--++
T Consensus 197 ~EE~-iI~PAi~~~~~~~g~~~~~GP~paDt~F~~~~~~~~D~vl 240 (307)
T PRK03946 197 GEEE-EIKKAIKKANQFLGFEIFFGPLVPDSAFTPNKRKKFNYYV 240 (307)
T ss_pred cchH-HHHHHHHHHHHhcCCCcccCCcCchhhcccccccCCCEEE
Confidence 3456 889999999954 9999999754 4456775554
No 38
>PRK05793 amidophosphoribosyltransferase; Provisional
Probab=54.29 E-value=13 Score=34.81 Aligned_cols=65 Identities=15% Similarity=0.182 Sum_probs=43.3
Q ss_pred cceeEeecccccChHHHHHhh---CC---cccccceeehHHHHHHhHhcCCCCc---ccccccccCceEEEEEecchh
Q 030252 74 DEIFCLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAYKALRDRAPYPP---NHVVGHLSGTNLVRFLFIGES 142 (180)
Q Consensus 74 DDIfClF~G~LeNL~~L~qQY---GL---sK~aNEv~lVIEAYRTLRDRgPYPA---dQVVkdL~G~Faf~~~~~g~~ 142 (180)
.++-..+-|.|.|-..||+++ |. +.+-.|+ +...|....+. + +. -++++.++|.|+|++++-+..
T Consensus 110 g~~alvhNG~I~N~~eLr~~L~~~g~~f~s~sDSEv--i~~li~~~~~~-~-~~~ai~~~~~~l~G~ya~vi~~~~~l 183 (469)
T PRK05793 110 GSIAIAHNGNLVNADVIRELLEDGGRIFQTSIDSEV--ILNLIARSAKK-G-LEKALVDAIQAIKGSYALVILTEDKL 183 (469)
T ss_pred CCEEEEEEEEEeCHHHHHHHHHhcCCcccCCCHHHH--HHHHHHHHccC-C-HHHHHHHHHHHhhhhceEEEEECCEE
Confidence 578899999999999999985 32 3344454 44444432211 1 11 158899999999999875443
No 39
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=52.40 E-value=31 Score=27.16 Aligned_cols=40 Identities=13% Similarity=0.179 Sum_probs=33.6
Q ss_pred hHHHHHHHhcCCCCcEEEEeCCceEEEEecCCCCCccccc
Q 030252 30 STALVDRFLQTNSSAVSVQVGDNVTLAYTHQNESPLRQRS 69 (180)
Q Consensus 30 ~~ell~~F~s~~p~avsv~~G~~~~LAYs~~~~~~l~pR~ 69 (180)
+++.++.++..+.|++.++-+..+-+||=+++-...+|.+
T Consensus 2 ~~~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L 41 (132)
T PF14871_consen 2 PEQFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGL 41 (132)
T ss_pred HHHHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCC
Confidence 6789999999999999999998888999988865555543
No 40
>cd01949 GGDEF Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.
Probab=52.18 E-value=24 Score=24.36 Aligned_cols=58 Identities=16% Similarity=0.148 Sum_probs=40.4
Q ss_pred eeEeecccccChHHHHHhhCCcccccceeehHHHHHHhHhcCCCCcccccccccCceEEEEE
Q 030252 76 IFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGTNLVRFL 137 (180)
Q Consensus 76 IfClF~G~LeNL~~L~qQYGLsK~aNEv~lVIEAYRTLRDRgPYPAdQVVkdL~G~Faf~~~ 137 (180)
=++++.=.|+|+..++++||...+. -++.+.++.|++.-|- .+.+-+-=++.|.+++-
T Consensus 31 ~~~l~~i~i~~~~~i~~~~g~~~~~---~~l~~~~~~l~~~~~~-~~~~~~~~~~~f~~l~~ 88 (158)
T cd01949 31 PLALLLIDIDHFKQINDTYGHAAGD---EVLKEVAERLRSSLRE-SDLVARLGGDEFAILLP 88 (158)
T ss_pred eEEEEEEEchhhhHHHHhhChHhHH---HHHHHHHHHHHHhCCC-CCEEEEecCCeEEEEeC
Confidence 3677788999999999999965442 3567788888876654 23344444467777764
No 41
>PRK14053 methyltransferase; Provisional
Probab=51.22 E-value=6.3 Score=34.12 Aligned_cols=60 Identities=17% Similarity=0.324 Sum_probs=38.7
Q ss_pred hHHHHHhhCCcc--ccc---ceeehHHHHHHhHhcCCCCcccccccccC--ceEEEEEecchhhhhcch
Q 030252 87 LGSLRQQYGLAK--SAN---EVILVIEAYKALRDRAPYPPNHVVGHLSG--TNLVRFLFIGESLLMDML 148 (180)
Q Consensus 87 L~~L~qQYGLsK--~aN---Ev~lVIEAYRTLRDRgPYPAdQVVkdL~G--~Faf~~~~~g~~~~~d~l 148 (180)
+...+||--+-- +.. +-.=.|+.|+. +| |+||++-+|-++++ +=+|..-.+|+.+||+.+
T Consensus 116 VerFq~QVeiVD~Ig~eD~~~I~a~I~~~~~-k~-ga~~~~pmvv~~~~~~~~~~~~~~~~d~~~s~~~ 182 (194)
T PRK14053 116 VQRFQQQVELLDRIGLTDLEEIRKIVDDYKD-KG-EAYPEEPVLVCSPKKRQQTFAVPISGDIIISEEF 182 (194)
T ss_pred HHHHHhheEEEEeecCCCHHHHHHHHHHHHh-CC-CCCCCCcEEEEEcccccccccccCCCcEEEEeeE
Confidence 456777754421 111 11223455554 34 89999999998887 567777778999988864
No 42
>TIGR00254 GGDEF diguanylate cyclase (GGDEF) domain. The GGDEF domain is named for the motif GG[DE]EF shared by many proteins carrying the domain. There is evidence that the domain has diguanylate cyclase activity. Several proteins carrying this domain also carry domains with functions relating to environmental sensing. These include PleD, a response regulator protein involved in the swarmer-to-stalked cell transition in Caulobacter crescentus, and FixL, a heme-containing oxygen sensor protein.
Probab=49.27 E-value=53 Score=23.31 Aligned_cols=59 Identities=14% Similarity=0.106 Sum_probs=39.6
Q ss_pred eEeecccccChHHHHHhhCCcccccceeehHHHHHHhHhcCCCCcccccccccCceEEEEEec
Q 030252 77 FCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGTNLVRFLFI 139 (180)
Q Consensus 77 fClF~G~LeNL~~L~qQYGLsK~aNEv~lVIEAYRTLRDRgPYPAdQVVkdL~G~Faf~~~~~ 139 (180)
++++.=.|+|+..++..||...+-. ++.+..+.|++--| +-+-+.|-=.+.|++.+-..
T Consensus 34 ~~l~~i~i~~~~~i~~~~G~~~~~~---ll~~~a~~l~~~~~-~~~~i~r~~~~~f~il~~~~ 92 (165)
T TIGR00254 34 FSVLMIDIDNFKKINDTLGHDVGDE---VLREVARILQSSVR-GSDVVGRYGGEEFVVILPGT 92 (165)
T ss_pred eEEEEEeccchhHHHHhhChhhHHH---HHHHHHHHHHHhcC-cCCEEEEecCCeEEEEeCCC
Confidence 5677888999999999999654432 56666777777663 22334444446788875443
No 43
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=44.41 E-value=16 Score=22.95 Aligned_cols=27 Identities=30% Similarity=0.422 Sum_probs=16.9
Q ss_pred HHHHhhCCccccc------ceeehHHHHHHhHh
Q 030252 89 SLRQQYGLAKSAN------EVILVIEAYKALRD 115 (180)
Q Consensus 89 ~L~qQYGLsK~aN------Ev~lVIEAYRTLRD 115 (180)
.|.++|+--|..+ .-..|.+||++|+|
T Consensus 23 ~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 23 KLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred HHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence 3455666555543 33557789998876
No 44
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=39.52 E-value=16 Score=34.15 Aligned_cols=48 Identities=33% Similarity=0.464 Sum_probs=31.0
Q ss_pred eecccccChHHHHHhhCC-----cccccceeehHHHHHHhHhcCCCCccccccc
Q 030252 79 LFEGALDNLGSLRQQYGL-----AKSANEVILVIEAYKALRDRAPYPPNHVVGH 127 (180)
Q Consensus 79 lF~G~LeNL~~L~qQYGL-----sK~aNEv~lVIEAYRTLRDRgPYPAdQVVkd 127 (180)
+.+-.++++..|.+ .|+ |==+..+...|+|||-|..|-+||=+==|-+
T Consensus 158 mveSAl~~~~~le~-~~f~~iviS~KsS~v~~~i~ayrlla~~~dyPLHlGvTE 210 (360)
T PRK00366 158 LVESALRHAKILEE-LGFDDIKISVKASDVQDLIAAYRLLAKRCDYPLHLGVTE 210 (360)
T ss_pred HHHHHHHHHHHHHH-CCCCcEEEEEEcCCHHHHHHHHHHHHhcCCCCceecccC
Confidence 34444555544433 232 4234568889999999999999997654433
No 45
>PF00392 GntR: Bacterial regulatory proteins, gntR family; InterPro: IPR000524 Many bacterial transcription regulation proteins bind DNA through a helix-turn-helix (HTH) motif, which can be classified into subfamilies on the basis of sequence similarities. The HTH GntR family has many members distributed among diverse bacterial groups that regulate various biological processes. It was named GntR after the Bacillus subtilis repressor of the gluconate operon []. Family members include GntR, HutC, KorA, NtaR, FadR, ExuR, FarR, DgoR and PhnF. The crystal structure of the FadR protein has been determined []. In general, these proteins contain a DNA-binding HTH domain at the N terminus, and an effector-binding or oligomerisation domain at the C terminus (IPR011711 from INTERPRO). The DNA-binding domain is well conserved in structure for the whole of the GntR family, consisting of a 3-helical bundle core with a small beta-sheet (wing); the GntR winged helix structure is similar to that found in several other transcriptional regulator families. The regions outside the DNA-binding domain are more variable and are consequently used to define GntR subfamilies []. This entry represents the N-terminal DNA-binding domain of the GntR family.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1HW1_B 1H9T_A 1HW2_A 1H9G_A 1E2X_A 3IHU_A 3C7J_A 2RA5_A 3BY6_C 3IC7_A ....
Probab=37.83 E-value=30 Score=23.09 Aligned_cols=29 Identities=28% Similarity=0.500 Sum_probs=21.8
Q ss_pred ccChHHHHHhhCCcccccceeehHHHHHHhHhcC
Q 030252 84 LDNLGSLRQQYGLAKSANEVILVIEAYKALRDRA 117 (180)
Q Consensus 84 LeNL~~L~qQYGLsK~aNEv~lVIEAYRTLRDRg 117 (180)
|-+...|.++||.|+.+ |-||++.|-++|
T Consensus 24 lps~~~la~~~~vsr~t-----vr~al~~L~~~g 52 (64)
T PF00392_consen 24 LPSERELAERYGVSRTT-----VREALRRLEAEG 52 (64)
T ss_dssp E--HHHHHHHHTS-HHH-----HHHHHHHHHHTT
T ss_pred eCCHHHHHHHhccCCcH-----HHHHHHHHHHCC
Confidence 34788999999999875 778899888876
No 46
>smart00267 GGDEF diguanylate cyclase. Diguanylate cyclase, present in a variety of bacteria
Probab=37.00 E-value=57 Score=22.65 Aligned_cols=59 Identities=19% Similarity=0.146 Sum_probs=42.1
Q ss_pred eEeecccccChHHHHHhhCCcccccceeehHHHHHHhHhcCCCCcccccccccCceEEEEEec
Q 030252 77 FCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGTNLVRFLFI 139 (180)
Q Consensus 77 fClF~G~LeNL~~L~qQYGLsK~aNEv~lVIEAYRTLRDRgPYPAdQVVkdL~G~Faf~~~~~ 139 (180)
+|++.=.|+|+..+++.||..++.. ++.+..+.|+.--|- -+.+-|--++.|++++...
T Consensus 35 ~~l~~i~i~~~~~~~~~~g~~~~~~---~l~~i~~~l~~~~~~-~~~~~r~~~~~f~ii~~~~ 93 (163)
T smart00267 35 FALLLIDLDNFKDINDTYGHAVGDE---LLQEVAQRLSSCLRP-GDLLARLGGDEFALLLPET 93 (163)
T ss_pred EEEEEEEccccchhhhccCchhHHH---HHHHHHHHHHHhcCC-CCEEEEecCceEEEEecCC
Confidence 7788888999999999999766532 455566666665544 2456666668898887644
No 47
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=36.50 E-value=22 Score=22.72 Aligned_cols=26 Identities=31% Similarity=0.420 Sum_probs=15.8
Q ss_pred HHHhhCCcccc-------cceeehHHHHHHhHh
Q 030252 90 LRQQYGLAKSA-------NEVILVIEAYKALRD 115 (180)
Q Consensus 90 L~qQYGLsK~a-------NEv~lVIEAYRTLRD 115 (180)
|.++|+--|.. ..-..|.|||.+|+|
T Consensus 25 l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~ 57 (60)
T smart00271 25 LALKYHPDKNPGDKEEAEEKFKEINEAYEVLSD 57 (60)
T ss_pred HHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcC
Confidence 34455554444 234457889999887
No 48
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=35.92 E-value=23 Score=27.33 Aligned_cols=30 Identities=27% Similarity=0.495 Sum_probs=22.7
Q ss_pred cChHHHHHhhCCcccccceeehHHHHHHhHhcC
Q 030252 85 DNLGSLRQQYGLAKSANEVILVIEAYKALRDRA 117 (180)
Q Consensus 85 eNL~~L~qQYGLsK~aNEv~lVIEAYRTLRDRg 117 (180)
+.|..+.+.| ++-.+--.|.+.|+.||.+|
T Consensus 111 ~ll~~W~~~f---~~~~~~~~i~~~y~~Lk~~G 140 (140)
T PF00790_consen 111 ELLQEWAEAF---KSDPELSLIQDTYKRLKRKG 140 (140)
T ss_dssp HHHHHHHHHT---TTSTTGHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHH---CCCCCchHHHHHHHHHHHCc
Confidence 3344555555 66678889999999999988
No 49
>PRK02746 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=34.45 E-value=25 Score=32.47 Aligned_cols=37 Identities=16% Similarity=0.170 Sum_probs=28.0
Q ss_pred ccceeehHHHHHHhHhcC-------CCCccccccccc---------CceEEEE
Q 030252 100 ANEVILVIEAYKALRDRA-------PYPPNHVVGHLS---------GTNLVRF 136 (180)
Q Consensus 100 aNEv~lVIEAYRTLRDRg-------PYPAdQVVkdL~---------G~Faf~~ 136 (180)
.-|.-+++-|-+.+|..| |||||-+-.... |+|-.++
T Consensus 225 ~EE~~iI~PAIe~~r~~g~g~~v~GP~paDt~F~~~~~~~~~~~~~~~~D~vv 277 (345)
T PRK02746 225 TEEKDWLIPWLESWRQKNPDIQLLGPIPPDTCWVSPAQAWYGKGVAEAPDGYL 277 (345)
T ss_pred HHHHHHHHHHHHHHHhcCCCceeeCCCCchhhccccccccccccccCCCCEEE
Confidence 456778888888888775 999999876543 7776665
No 50
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=32.62 E-value=24 Score=32.87 Aligned_cols=24 Identities=33% Similarity=0.614 Sum_probs=20.8
Q ss_pred ccceeehHHHHHHhHhcCCCCccc
Q 030252 100 ANEVILVIEAYKALRDRAPYPPNH 123 (180)
Q Consensus 100 aNEv~lVIEAYRTLRDRgPYPAdQ 123 (180)
+..+...|+|||-|..|-+||=+=
T Consensus 174 sSdv~~~i~ayr~la~~~dyPLHl 197 (346)
T TIGR00612 174 ASDVAETVAAYRLLAERSDYPLHL 197 (346)
T ss_pred cCCHHHHHHHHHHHHhhCCCCcee
Confidence 456788999999999999999765
No 51
>PRK15481 transcriptional regulatory protein PtsJ; Provisional
Probab=32.17 E-value=38 Score=29.92 Aligned_cols=28 Identities=25% Similarity=0.409 Sum_probs=23.8
Q ss_pred cChHHHHHhhCCcccccceeehHHHHHHhHhcC
Q 030252 85 DNLGSLRQQYGLAKSANEVILVIEAYKALRDRA 117 (180)
Q Consensus 85 eNL~~L~qQYGLsK~aNEv~lVIEAYRTLRDRg 117 (180)
-....|.++||.|+++ |.|||+.|...|
T Consensus 30 ps~r~la~~~~vsr~t-----v~~a~~~L~~~g 57 (431)
T PRK15481 30 PPVRELASELGVNRNT-----VAAAYKRLVTAG 57 (431)
T ss_pred cCHHHHHHHHCCCHHH-----HHHHHHHHHHCC
Confidence 3456799999999987 899999998876
No 52
>COG3394 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.04 E-value=22 Score=32.01 Aligned_cols=19 Identities=37% Similarity=0.602 Sum_probs=16.1
Q ss_pred HhhCCcccccceeehHHHHHH
Q 030252 92 QQYGLAKSANEVILVIEAYKA 112 (180)
Q Consensus 92 qQYGLsK~aNEv~lVIEAYRT 112 (180)
-.|||||+.|-. +|||||+
T Consensus 10 DDFGLs~G~nyG--Iiea~~~ 28 (257)
T COG3394 10 DDFGLSKGVNYG--IIEAHRT 28 (257)
T ss_pred cccCcCcccchh--HHHHHhC
Confidence 359999999987 5899986
No 53
>PF14026 DUF4242: Protein of unknown function (DUF4242)
Probab=30.80 E-value=48 Score=23.88 Aligned_cols=36 Identities=33% Similarity=0.672 Sum_probs=27.3
Q ss_pred ccccc--ccceeEeecccccChHHHHHhhCCcccccceeehHHHHHHhHhcCCCCccccc
Q 030252 68 RSFAV--KDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVV 125 (180)
Q Consensus 68 R~F~~--~DDIfClF~G~LeNL~~L~qQYGLsK~aNEv~lVIEAYRTLRDRgPYPAdQVV 125 (180)
|+|-. .+-+||+|++. | -||-|...+|+=.|+|.+.
T Consensus 38 ~s~v~~d~~k~~Cly~Ap-----------------~-----~eaV~~~~~~aG~p~d~I~ 75 (77)
T PF14026_consen 38 RSYVSEDDGKIFCLYEAP-----------------D-----EEAVREHARRAGLPADRIT 75 (77)
T ss_pred EEEEecCCCeEEEEEECC-----------------C-----HHHHHHHHHHcCCCcceEE
Confidence 55666 56799999874 2 2777888889999998875
No 54
>PRK03371 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase 2; Provisional
Probab=30.79 E-value=34 Score=31.29 Aligned_cols=37 Identities=27% Similarity=0.476 Sum_probs=28.2
Q ss_pred ccceeehHHHHHHhHhc-----CCCCccccc-ccccCceEEEE
Q 030252 100 ANEVILVIEAYKALRDR-----APYPPNHVV-GHLSGTNLVRF 136 (180)
Q Consensus 100 aNEv~lVIEAYRTLRDR-----gPYPAdQVV-kdL~G~Faf~~ 136 (180)
.-|.-+++-|.+.+|.. ||||||-+- +...|.|-.++
T Consensus 221 ~EE~~iI~PAi~~~~~~G~~v~GP~paDt~F~~~~~~~~D~vv 263 (326)
T PRK03371 221 DEEIRIVTPAIEAMRAKGMDVYGPCPPDTVFLQAYEGQYDMVV 263 (326)
T ss_pred HHHHHHHHHHHHHHHHCCCcccCCCCchhhcccccccCCCEEE
Confidence 46777889899998865 799999965 44567776665
No 55
>PRK01909 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated
Probab=30.09 E-value=35 Score=31.22 Aligned_cols=37 Identities=16% Similarity=0.262 Sum_probs=27.0
Q ss_pred ccceeehHHHHHHhHhc-----CCCCcccccc-cccCceEEEE
Q 030252 100 ANEVILVIEAYKALRDR-----APYPPNHVVG-HLSGTNLVRF 136 (180)
Q Consensus 100 aNEv~lVIEAYRTLRDR-----gPYPAdQVVk-dL~G~Faf~~ 136 (180)
.-|.-+++-|-+.+|.. ||||||-+-. ...|+|-.++
T Consensus 218 ~EE~~iI~PAi~~~~~~Gi~v~GP~paDt~F~~~~~~~~D~vv 260 (329)
T PRK01909 218 REEIDVIEPALARARAAGIDARGPYPADTLFQPRYLEDADCVL 260 (329)
T ss_pred HHHHHHHHHHHHHHHHCCCCccCCCCchhhcccccccCCCEEE
Confidence 34566777799998865 7999999754 4467776665
No 56
>TIGR00557 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase. This model represents PdxA, an NAD+-dependent 4-hydroxythreonine 4-phosphate dehydrogenase (EC 1.1.1.262) active in pyridoxal phosphate biosynthesis.
Probab=28.66 E-value=39 Score=30.73 Aligned_cols=36 Identities=22% Similarity=0.348 Sum_probs=26.9
Q ss_pred cceeehHHHHHHhHhc-----CCCCccccc-ccccCceEEEE
Q 030252 101 NEVILVIEAYKALRDR-----APYPPNHVV-GHLSGTNLVRF 136 (180)
Q Consensus 101 NEv~lVIEAYRTLRDR-----gPYPAdQVV-kdL~G~Faf~~ 136 (180)
-|.-+++-|-+.+|.+ ||||||-+- +...|+|-.++
T Consensus 216 EE~~iI~PAI~~~~~~G~~v~GP~paDt~F~~~~~~~~D~vv 257 (320)
T TIGR00557 216 EEIDIIIPALEALRAEGIDLIGPLPADTLFHPAALAKYDAVL 257 (320)
T ss_pred HHHHHHHHHHHHHHHCCCcccCCCCchhhcccccccCCCEEE
Confidence 3556888899999876 799999965 44567776665
No 57
>TIGR00938 thrB_alt homoserine kinase, Neisseria type. Homoserine kinase is required in the biosynthesis of threonine from aspartate.The member of this family from Pseudomonas aeruginosa was shown by direct assay and complementation to act specifically as a homoserine kinase.
Probab=28.33 E-value=1.2e+02 Score=25.48 Aligned_cols=67 Identities=22% Similarity=0.183 Sum_probs=45.4
Q ss_pred ccccceeehHHHHHHhHhcCCCCcccccccccCc--------eEEEEEec-chhhhhcchhHHHHHHhHHHHHhhhhhh
Q 030252 98 KSANEVILVIEAYKALRDRAPYPPNHVVGHLSGT--------NLVRFLFI-GESLLMDMLPLLMMLTCSKVLAASHLLL 167 (180)
Q Consensus 98 K~aNEv~lVIEAYRTLRDRgPYPAdQVVkdL~G~--------Faf~~~~~-g~~~~~d~l~~~~~~~c~k~~a~~~~~~ 167 (180)
++..+....+++.+.|++.| .|+-.+++..+|. ..+++-++ |..+-.. .+. ....|++.+|.-|...
T Consensus 57 ~~~~~i~~e~~~l~~L~~~g-~pvp~~i~t~~g~~~~~~~g~~~~l~e~i~G~~~~~~-~~~-~~~~~G~~LA~lH~~~ 132 (307)
T TIGR00938 57 VKAEELPFFLALTTHLAARG-LPVPKPVKSRDGRQLSTLAGKPACLVEFLQGLSVGRP-TAM-HCRPVGEVLAWMHLAG 132 (307)
T ss_pred CCHHHHHHHHHHHHHHHHCC-CCCCccccCCCCCeehhcCCeEEEEEEeCCCCCCCCC-CHH-HHHHHHHHHHHHHhhh
Confidence 34566677789999999999 6888888876665 33444444 7655322 222 4577889999888654
No 58
>PF12029 DUF3516: Domain of unknown function (DUF3516); InterPro: IPR021904 This presumed domain is functionally uncharacterised. This domain is found in bacteria. This domain is typically between 460 to 473 amino acids in length. This domain is found associated with PF00270 from PFAM, PF00271 from PFAM.
Probab=27.68 E-value=45 Score=32.28 Aligned_cols=48 Identities=31% Similarity=0.540 Sum_probs=34.0
Q ss_pred CccccccccccceeEeecccccChHHHHHhhCCcccccceee---hHHHHHHhHhcCCC
Q 030252 64 PLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVIL---VIEAYKALRDRAPY 119 (180)
Q Consensus 64 ~l~pR~F~~~DDIfClF~G~LeNL~~L~qQYGLsK~aNEv~l---VIEAYRTLRDRgPY 119 (180)
.|.|. +++-|||=-.+ +.+.+.+.|||+++ |.++ +..||||||.-=|=
T Consensus 238 ~l~PK--SVvRdM~E~am----tF~dyV~~YgLaRS--EGvlLRYLsDAyraL~qtVP~ 288 (461)
T PF12029_consen 238 ELSPK--SVVRDMYERAM----TFSDYVSRYGLARS--EGVLLRYLSDAYRALRQTVPE 288 (461)
T ss_pred CCCcc--hHHHHHHHhhC----CHHHHHHHhCcchh--hhHHHHHHHHHHHHHhhhCCh
Confidence 34454 45666654332 56788999999987 6665 57999999987663
No 59
>PF00990 GGDEF: GGDEF domain; InterPro: IPR000160 This domain appears to be ubiquitous in bacteria and is often linked to a regulatory domain, such as a phosphorylation receiver or oxygen sensing domain. Its function is to synthesize cyclic di-GMP, which is used as an intracellular signalling molecule in a wide variety of bacteria [,]. Enzymatic activity can be strongly influenced by the adjacent domains. Processes regulated by this domain include exopolysaccharide synthesis, biofilm formation, motility and cell differentiation. Structural studies of PleD from Caulobacter crescentus show that this domain forms a five-stranded beta sheet surrounded by helices, similar to the catalytic core of adenylate cyclase [].; PDB: 3IGN_A 3BRE_B 3EZU_A 3ICL_B 3PJX_A 3PJW_A 3HVW_A 3HVA_B 3I5C_B 3I5B_B ....
Probab=27.42 E-value=74 Score=22.36 Aligned_cols=65 Identities=18% Similarity=0.216 Sum_probs=46.8
Q ss_pred cceeEeecccccChHHHHHhhCCcccccceeehHHHHHHhHhcCCCCcccccccccCceEEEEEecchh
Q 030252 74 DEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGTNLVRFLFIGES 142 (180)
Q Consensus 74 DDIfClF~G~LeNL~~L~qQYGLsK~aNEv~lVIEAYRTLRDRgPYPAdQVVkdL~G~Faf~~~~~g~~ 142 (180)
..-++++.=.|+|+..++++||-.. +++ ++-+.-+.|++.-+- .|-+.|-=++.|++.+....+.
T Consensus 30 ~~~~~l~~i~i~~~~~l~~~~G~~~-~~~--~l~~i~~~L~~~~~~-~~~~~r~~~~~f~il~~~~~~~ 94 (161)
T PF00990_consen 30 GEPFALVLIDIDNLDELNEKYGYEV-GDE--ILRQIAKRLKKQLRE-SDILARLGDDEFAILLPDTDSE 94 (161)
T ss_dssp TSEEEEEEEEETTHHHHHHHHHHHH-HHH--HHHHHHHHHHHHCCT-TSEEEEEETTEEEEEEETCTHH
T ss_pred CCCceEEEEeccccccccccccccc-ccc--ccccccccccccccc-ccccccccchheeecccccccc
Confidence 3556777778999999999999643 333 455666777776544 5666677788999988877654
No 60
>smart00345 HTH_GNTR helix_turn_helix gluconate operon transcriptional repressor.
Probab=27.04 E-value=73 Score=19.67 Aligned_cols=29 Identities=28% Similarity=0.373 Sum_probs=23.7
Q ss_pred ccChHHHHHhhCCcccccceeehHHHHHHhHhcC
Q 030252 84 LDNLGSLRQQYGLAKSANEVILVIEAYKALRDRA 117 (180)
Q Consensus 84 LeNL~~L~qQYGLsK~aNEv~lVIEAYRTLRDRg 117 (180)
+.+...|.++||.|+.+ |-++++.|++.|
T Consensus 20 l~s~~~la~~~~vs~~t-----v~~~l~~L~~~g 48 (60)
T smart00345 20 LPSERELAAQLGVSRTT-----VREALSRLEAEG 48 (60)
T ss_pred CcCHHHHHHHHCCCHHH-----HHHHHHHHHHCC
Confidence 44788899999998765 678889998876
No 61
>cd07377 WHTH_GntR Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators. This CD represents the winged HTH DNA-binding domain of the GntR (named after the gluconate operon repressor in Bacillus subtilis) family of bacterial transcriptional regulators and their putative homologs found in eukaryota and archaea. The GntR family has over 6000 members distributed among almost all bacterial species, which is comprised of FadR, HutC, MocR, YtrA, AraR, PlmA, and other subfamilies for the regulation of the most varied biological process. The monomeric proteins of the GntR family are characterized by two function domains: a small highly conserved winged helix-turn-helix prokaryotic DNA binding domain in the N-terminus, and a very diverse regulatory ligand-binding domain in the C-terminus for effector-binding/oligomerization, which provides the basis for the subfamily classifications. Binding of the effector to GntR-like transcriptional regulators is
Probab=26.93 E-value=73 Score=20.05 Aligned_cols=28 Identities=21% Similarity=0.387 Sum_probs=22.7
Q ss_pred cChHHHHHhhCCcccccceeehHHHHHHhHhcC
Q 030252 85 DNLGSLRQQYGLAKSANEVILVIEAYKALRDRA 117 (180)
Q Consensus 85 eNL~~L~qQYGLsK~aNEv~lVIEAYRTLRDRg 117 (180)
.+...|.++||+|+.+ |=++++.|+|+|
T Consensus 26 ~~~~~la~~~~is~~~-----v~~~l~~L~~~G 53 (66)
T cd07377 26 PSERELAEELGVSRTT-----VREALRELEAEG 53 (66)
T ss_pred CCHHHHHHHHCCCHHH-----HHHHHHHHHHCC
Confidence 3588999999998744 558899999987
No 62
>PF12550 GCR1_C: Transcriptional activator of glycolytic enzymes; InterPro: IPR022210 This domain family is found in eukaryotes, and is approximately 80 amino acids in length. This family is activates the transcription of glycolytic enzymes.
Probab=26.68 E-value=48 Score=23.76 Aligned_cols=43 Identities=19% Similarity=0.315 Sum_probs=30.7
Q ss_pred ChHHHHHhhCCcccc-cce--------eehHHHHHHhHhcCCCCccccccccc
Q 030252 86 NLGSLRQQYGLAKSA-NEV--------ILVIEAYKALRDRAPYPPNHVVGHLS 129 (180)
Q Consensus 86 NL~~L~qQYGLsK~a-NEv--------~lVIEAYRTLRDRgPYPAdQVVkdL~ 129 (180)
-+.+|.++||. +-- +.. ..||+++.+|.-..=.+.++++..++
T Consensus 27 sI~~le~~yG~-~WR~~~~~~~~y~rRK~Ii~~I~~l~~~~g~~~~~ai~~le 78 (81)
T PF12550_consen 27 SIRSLEKKYGS-KWRRDSKERRTYSRRKVIIDFIERLANERGISEEEAIEILE 78 (81)
T ss_pred CHHHHHHHhCh-hhccCcccchhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 47789999994 333 222 36899999977667778888777664
No 63
>PRK05312 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=23.89 E-value=49 Score=30.39 Aligned_cols=37 Identities=19% Similarity=0.333 Sum_probs=27.3
Q ss_pred ccceeehHHHHHHhHh-----cCCCCccccccc-ccCceEEEE
Q 030252 100 ANEVILVIEAYKALRD-----RAPYPPNHVVGH-LSGTNLVRF 136 (180)
Q Consensus 100 aNEv~lVIEAYRTLRD-----RgPYPAdQVVkd-L~G~Faf~~ 136 (180)
.-|.-+++-|-+.+|. .||||||-+-.. ..|+|-.++
T Consensus 227 ~EE~~iI~PAI~~~~~~Gi~v~GP~paDt~F~~~~~~~~D~vv 269 (336)
T PRK05312 227 REDIDIIAPAIEQLRAEGIDARGPLPADTMFHAAARATYDAAI 269 (336)
T ss_pred HHHHHHHHHHHHHHHHCCCCccCCCCchhhcccccccCCCEEE
Confidence 4567788889999885 479999997543 456776655
No 64
>PF09931 DUF2163: Uncharacterized conserved protein (DUF2163); InterPro: IPR019228 This entry describes the N-terminal region of a family of proteins found almost exclusively in phage or in prophage regions of bacterial genomes, including the phage-like Rhodobacter capsulatus (Rhodopseudomonas capsulata) gene transfer agent, which packages DNA. An apparent exception is Wolbachia pipientis wMel, a bacterial endosymbiont of the fruit fly, which has several candidate phage-related genes physically separate from obvious prophage regions.
Probab=22.67 E-value=3.9e+02 Score=21.08 Aligned_cols=87 Identities=18% Similarity=0.199 Sum_probs=63.2
Q ss_pred EEeCCceEEEEecCCCCCccccccccccceeEeecccccChHHHHHhhCCcccccceeehHHH---HHHhHhcCCCCccc
Q 030252 47 VQVGDNVTLAYTHQNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEA---YKALRDRAPYPPNH 123 (180)
Q Consensus 47 v~~G~~~~LAYs~~~~~~l~pR~F~~~DDIfClF~G~LeNL~~L~qQYGLsK~aNEv~lVIEA---YRTLRDRgPYPAdQ 123 (180)
+..-++..+-||.++++.. +|++-+.-.+.+ +-..+++.=|+++..-|+...... .......|||+.-.
T Consensus 25 i~~~dg~~~~~Td~D~dl~-------~~g~ty~a~~~~-~~~~i~~~~~~~~d~~~it~~~~~~~i~~~~l~~g~~d~a~ 96 (163)
T PF09931_consen 25 ITRRDGVVWRFTDHDRDLT-------FDGVTYRAASGL-TRSAISQSSGLSVDNLEITGPLSSGVIAEADLAAGPFDGAR 96 (163)
T ss_pred EEccCCCEEEeeCCCCCEE-------ECCEEEEcCCCC-CcchheeccCCccCCEEEEEECCCCchhHHHHhcCCCCCcE
Confidence 5668999999999988643 366667766666 889999999999999999987766 77778899998755
Q ss_pred cc---ccccCceEEEEEecch
Q 030252 124 VV---GHLSGTNLVRFLFIGE 141 (180)
Q Consensus 124 VV---kdL~G~Faf~~~~~g~ 141 (180)
|- -+.+-....+.++.|+
T Consensus 97 v~i~~~~~~d~~~~~~l~~G~ 117 (163)
T PF09931_consen 97 VEIFRVNWSDPEGAVLLFSGR 117 (163)
T ss_pred EEEEEEecCCCcceEEEEEEE
Confidence 42 2222224455555544
No 65
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=22.39 E-value=51 Score=23.86 Aligned_cols=14 Identities=50% Similarity=0.819 Sum_probs=13.1
Q ss_pred hHHHHHHhHhcCCC
Q 030252 106 VIEAYKALRDRAPY 119 (180)
Q Consensus 106 VIEAYRTLRDRgPY 119 (180)
|+||+|+|-+.-||
T Consensus 8 v~~aFr~lA~~Kpy 21 (69)
T PF08726_consen 8 VEEAFRALAGGKPY 21 (69)
T ss_dssp HHHHHHHHCTSSSC
T ss_pred HHHHHHHHHcCCCc
Confidence 79999999999998
No 66
>PRK03743 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated
Probab=21.64 E-value=60 Score=29.73 Aligned_cols=37 Identities=27% Similarity=0.337 Sum_probs=27.5
Q ss_pred ccceeehHHHHHHhHhc-----CCCCcccccc-cccCceEEEE
Q 030252 100 ANEVILVIEAYKALRDR-----APYPPNHVVG-HLSGTNLVRF 136 (180)
Q Consensus 100 aNEv~lVIEAYRTLRDR-----gPYPAdQVVk-dL~G~Faf~~ 136 (180)
..|.-+++-|-+.+|.. ||||||-+-. ...|+|-.++
T Consensus 222 ~EE~~iI~PAI~~~~~~g~~v~GP~paDt~F~~~~~~~~D~vv 264 (332)
T PRK03743 222 DEEVDEIIPAVEAAQEMGINVEGPVPADSVFHLALQGRYDAVL 264 (332)
T ss_pred HHHHHHHHHHHHHHHHCCCcccCCCCchhhcccccccCCCEEE
Confidence 46777888999998865 7999999754 3456676554
No 67
>COG1995 PdxA Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism]
Probab=21.52 E-value=79 Score=29.42 Aligned_cols=40 Identities=25% Similarity=0.531 Sum_probs=30.0
Q ss_pred HHHHHhhCCcc------------------cccceeehHHHHHHhHh-----cCCCCccccccc
Q 030252 88 GSLRQQYGLAK------------------SANEVILVIEAYKALRD-----RAPYPPNHVVGH 127 (180)
Q Consensus 88 ~~L~qQYGLsK------------------~aNEv~lVIEAYRTLRD-----RgPYPAdQVVkd 127 (180)
..|++++|..+ +.-|--++|-|-..+|. .||+|||-+-..
T Consensus 191 ~~L~~~fGi~~PriaVaGLNPHaGE~G~lG~EE~diI~Paie~aR~~Gi~~~GPlpADT~F~~ 253 (332)
T COG1995 191 KDLRKKFGIAEPRIAVAGLNPHAGEGGLLGREEIDIIIPAIEEARAEGIDLVGPLPADTLFHP 253 (332)
T ss_pred HHHHHhhCCCCcceEEeccCCCCCcCCCCCchhHHHHHHHHHHHHHhCCcccCCCCcchhhhh
Confidence 35889999877 44566666668888887 589999987544
No 68
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=21.06 E-value=63 Score=26.70 Aligned_cols=13 Identities=31% Similarity=0.340 Sum_probs=11.6
Q ss_pred eeehHHHHHHhHh
Q 030252 103 VILVIEAYKALRD 115 (180)
Q Consensus 103 v~lVIEAYRTLRD 115 (180)
+..|=|||+||+|
T Consensus 52 ss~iN~AY~tLkd 64 (173)
T PRK01773 52 SAEVNDALQILKD 64 (173)
T ss_pred HHHHHHHHHHHCC
Confidence 5788999999997
No 69
>PF05301 Mec-17: Touch receptor neuron protein Mec-17; InterPro: IPR007965 Mec-17 is the protein product of one of the 18 genes required for the development and function of the touch receptor neuron for gentle touch. Mec-17 is specifically required for maintaining the differentiation of the touch receptor []. This family is conserved to higher eukaryotes.; GO: 0019799 tubulin N-acetyltransferase activity
Probab=20.97 E-value=60 Score=26.18 Aligned_cols=18 Identities=28% Similarity=0.486 Sum_probs=14.7
Q ss_pred hHHHHHhhCCccccccee
Q 030252 87 LGSLRQQYGLAKSANEVI 104 (180)
Q Consensus 87 L~~L~qQYGLsK~aNEv~ 104 (180)
|+-|+|+|||.+.+.++.
T Consensus 92 l~Fl~Khy~L~~~ipQ~N 109 (120)
T PF05301_consen 92 LSFLKKHYGLQRYIPQSN 109 (120)
T ss_pred HHHHHHhcCCCcCCCCCc
Confidence 566999999998887764
No 70
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=20.83 E-value=59 Score=26.55 Aligned_cols=16 Identities=44% Similarity=0.667 Sum_probs=12.5
Q ss_pred eehHHHHHHhHh---cCCC
Q 030252 104 ILVIEAYKALRD---RAPY 119 (180)
Q Consensus 104 ~lVIEAYRTLRD---RgPY 119 (180)
..|-|||+||+| |+=|
T Consensus 51 ~~in~AY~~L~dp~~Ra~Y 69 (166)
T PRK01356 51 SELNNAYSTLKDALKRAEY 69 (166)
T ss_pred HHHHHHHHHhCCHHHHHHH
Confidence 478899999996 5444
No 71
>PRK05601 DNA polymerase III subunit epsilon; Validated
Probab=20.72 E-value=68 Score=30.16 Aligned_cols=35 Identities=29% Similarity=0.447 Sum_probs=29.4
Q ss_pred cChHHHHHhhCCcc-----------------cccceeehHHHHHHhHhcCCC
Q 030252 85 DNLGSLRQQYGLAK-----------------SANEVILVIEAYKALRDRAPY 119 (180)
Q Consensus 85 eNL~~L~qQYGLsK-----------------~aNEv~lVIEAYRTLRDRgPY 119 (180)
.+|..|.++||+.. +-.++.++.+.|+.+|++||.
T Consensus 200 ~rL~~La~~lGi~~p~~~A~~~Ra~~p~~~l~~~Da~ll~~l~~~~~~~~~l 251 (377)
T PRK05601 200 IRIRGVAHTLGLDAPAAEASVERAQVPHRQLCREETLLVARLYFALRASGPL 251 (377)
T ss_pred CCHHHHHHHhCCCCCchhhhhhhhcCChhhhhhHHHHHHHHHHHHhhccCCc
Confidence 67999999999987 225889999999999888864
No 72
>PRK00232 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed
Probab=20.10 E-value=68 Score=29.40 Aligned_cols=36 Identities=22% Similarity=0.402 Sum_probs=27.3
Q ss_pred cceeehHHHHHHhHhc-----CCCCccccc-ccccCceEEEE
Q 030252 101 NEVILVIEAYKALRDR-----APYPPNHVV-GHLSGTNLVRF 136 (180)
Q Consensus 101 NEv~lVIEAYRTLRDR-----gPYPAdQVV-kdL~G~Faf~~ 136 (180)
-|.-+++-|-+.+|.. ||||||-+- +...|+|-.++
T Consensus 223 EE~~iI~PAI~~~~~~G~~v~GP~paDt~F~~~~~~~~D~vv 264 (332)
T PRK00232 223 EEIDIIIPALEELRAEGINLVGPLPADTLFQPAYLGDADAVL 264 (332)
T ss_pred HHHHHHHHHHHHHHhCCCCcCCCCCchhhccccccCCCCEEE
Confidence 4777888899998865 799999975 44567776665
Done!